Query 000621
Match_columns 1387
No_of_seqs 767 out of 4265
Neff 7.5
Searched_HMMs 46136
Date Mon Apr 1 20:59:08 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 9E-127 2E-131 1121.5 52.4 616 144-787 42-667 (674)
2 KOG0923 mRNA splicing factor A 100.0 5E-122 1E-126 1060.8 45.9 625 141-793 253-889 (902)
3 KOG0924 mRNA splicing factor A 100.0 1E-121 2E-126 1056.8 44.7 613 144-786 347-972 (1042)
4 KOG0925 mRNA splicing factor A 100.0 4E-117 9E-122 990.4 49.4 632 123-792 24-672 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 1E-106 2E-111 1040.7 60.9 641 149-809 70-726 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5E-102 1E-106 1002.1 61.4 640 149-809 63-716 (1283)
7 KOG0920 ATP-dependent RNA heli 100.0 1E-99 2E-104 939.9 44.2 683 139-844 159-895 (924)
8 COG1643 HrpA HrpA-like helicas 100.0 8.1E-98 2E-102 930.3 47.3 626 145-782 42-707 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 8.3E-98 2E-102 871.9 43.4 619 143-782 246-1019(1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.1E-82 4.6E-87 807.0 56.7 591 152-810 1-606 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 4.8E-82 1.1E-86 806.1 58.1 582 151-810 3-599 (812)
12 KOG0921 Dosage compensation co 100.0 7.3E-55 1.6E-59 516.0 22.3 676 139-844 364-1115(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 4E-53 8.6E-58 527.4 37.0 396 152-583 164-594 (675)
14 KOG0330 ATP-dependent RNA heli 100.0 6.5E-47 1.4E-51 418.1 19.8 336 120-493 57-410 (476)
15 KOG0331 ATP-dependent RNA heli 100.0 5.4E-44 1.2E-48 422.3 26.0 329 137-493 98-451 (519)
16 KOG0338 ATP-dependent RNA heli 100.0 2.9E-42 6.3E-47 390.6 25.2 324 136-491 187-534 (691)
17 COG0513 SrmB Superfamily II DN 100.0 2.5E-41 5.5E-46 417.2 31.6 332 124-490 29-380 (513)
18 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-41 7.3E-46 383.8 26.8 338 118-491 239-625 (673)
19 PRK02362 ski2-like helicase; P 100.0 7.1E-40 1.5E-44 423.5 42.1 436 126-585 3-515 (737)
20 PTZ00110 helicase; Provisional 100.0 1.2E-40 2.5E-45 415.2 33.5 340 118-492 124-486 (545)
21 PRK01172 ski2-like helicase; P 100.0 2.3E-39 5.1E-44 416.0 43.1 426 137-587 8-495 (674)
22 PRK11776 ATP-dependent RNA hel 100.0 4.2E-40 9.1E-45 405.7 33.0 332 124-492 4-351 (460)
23 PRK04837 ATP-dependent RNA hel 100.0 6.5E-40 1.4E-44 399.8 32.4 332 123-492 7-364 (423)
24 KOG0328 Predicted ATP-dependen 100.0 6.9E-40 1.5E-44 347.8 23.0 339 120-493 23-376 (400)
25 PRK10590 ATP-dependent RNA hel 100.0 2.5E-39 5.3E-44 397.5 31.2 331 125-492 2-354 (456)
26 PRK11634 ATP-dependent RNA hel 100.0 4.9E-39 1.1E-43 403.8 33.7 331 125-491 7-353 (629)
27 PRK00254 ski2-like helicase; P 100.0 3.9E-38 8.6E-43 406.3 41.5 440 137-597 8-522 (720)
28 PRK11192 ATP-dependent RNA hel 100.0 6.7E-39 1.4E-43 392.5 32.3 332 125-493 2-355 (434)
29 PLN00206 DEAD-box ATP-dependen 100.0 4.8E-39 1E-43 399.6 30.4 337 118-492 115-477 (518)
30 KOG0340 ATP-dependent RNA heli 100.0 4.1E-39 8.8E-44 352.6 24.4 333 122-492 5-363 (442)
31 KOG0343 RNA Helicase [RNA proc 100.0 1.2E-39 2.6E-44 372.2 21.0 335 123-493 68-425 (758)
32 PRK04537 ATP-dependent RNA hel 100.0 1.2E-38 2.6E-43 398.3 31.9 329 125-491 10-365 (572)
33 KOG0342 ATP-dependent RNA heli 100.0 4.9E-39 1.1E-43 366.1 25.6 326 136-492 88-439 (543)
34 KOG0345 ATP-dependent RNA heli 100.0 7.1E-39 1.5E-43 361.7 26.2 342 137-508 13-385 (567)
35 PRK01297 ATP-dependent RNA hel 100.0 3.2E-37 6.8E-42 381.2 32.4 331 124-492 87-444 (475)
36 PTZ00424 helicase 45; Provisio 100.0 2.8E-37 6E-42 374.9 30.4 334 123-493 27-377 (401)
37 KOG0326 ATP-dependent RNA heli 100.0 2.5E-38 5.5E-43 340.7 15.4 335 123-493 84-432 (459)
38 KOG0336 ATP-dependent RNA heli 100.0 4E-37 8.7E-42 340.0 23.2 340 122-493 217-575 (629)
39 KOG0332 ATP-dependent RNA heli 100.0 5.9E-37 1.3E-41 337.2 22.9 342 120-491 86-444 (477)
40 KOG0347 RNA helicase [RNA proc 100.0 8.5E-38 1.9E-42 357.3 15.2 343 120-491 177-571 (731)
41 KOG0341 DEAD-box protein abstr 100.0 2.4E-37 5.1E-42 339.7 16.1 341 115-490 161-528 (610)
42 KOG0348 ATP-dependent RNA heli 100.0 2.3E-36 5E-41 344.7 24.7 346 120-492 132-556 (708)
43 KOG0335 ATP-dependent RNA heli 100.0 1.9E-36 4.1E-41 352.2 21.0 324 136-489 80-443 (482)
44 PLN03137 ATP-dependent DNA hel 100.0 1.7E-35 3.6E-40 373.9 29.9 329 125-493 436-790 (1195)
45 KOG0339 ATP-dependent RNA heli 100.0 5.7E-36 1.2E-40 338.8 22.6 340 119-493 218-578 (731)
46 TIGR03817 DECH_helic helicase/ 100.0 3.4E-35 7.3E-40 376.0 31.8 327 137-489 21-385 (742)
47 KOG0346 RNA helicase [RNA proc 100.0 1.1E-34 2.4E-39 324.9 22.4 333 124-492 19-412 (569)
48 TIGR00614 recQ_fam ATP-depende 100.0 6.1E-34 1.3E-38 350.8 31.1 308 147-492 6-335 (470)
49 PRK11057 ATP-dependent DNA hel 100.0 2E-33 4.3E-38 355.0 30.4 315 137-493 12-346 (607)
50 COG1202 Superfamily II helicas 100.0 6.8E-33 1.5E-37 318.3 30.9 430 137-599 201-679 (830)
51 TIGR00580 mfd transcription-re 100.0 8.1E-33 1.8E-37 356.6 35.2 380 10-490 366-770 (926)
52 PRK10689 transcription-repair 100.0 3.9E-32 8.4E-37 357.3 32.1 381 10-490 515-919 (1147)
53 KOG4284 DEAD box protein [Tran 100.0 7.6E-33 1.6E-37 320.5 21.3 342 122-491 23-380 (980)
54 TIGR01389 recQ ATP-dependent D 100.0 3.8E-32 8.2E-37 344.4 28.3 306 148-493 9-334 (591)
55 KOG0350 DEAD-box ATP-dependent 100.0 3.4E-32 7.3E-37 309.4 24.7 329 140-493 147-543 (620)
56 KOG0334 RNA helicase [RNA proc 100.0 1.1E-32 2.4E-37 340.0 22.6 341 116-491 357-721 (997)
57 KOG0327 Translation initiation 100.0 2.9E-32 6.2E-37 304.4 20.4 334 123-494 25-374 (397)
58 PRK13767 ATP-dependent helicas 100.0 2.2E-31 4.9E-36 347.4 32.2 319 137-478 18-384 (876)
59 COG1204 Superfamily II helicas 100.0 6E-31 1.3E-35 333.0 29.6 413 154-585 33-527 (766)
60 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-30 4.9E-35 324.5 31.0 341 149-523 13-425 (844)
61 KOG0353 ATP-dependent DNA heli 100.0 1.6E-30 3.4E-35 284.7 22.5 412 54-491 7-468 (695)
62 PRK10917 ATP-dependent DNA hel 100.0 1.3E-29 2.8E-34 323.6 32.7 306 142-488 251-587 (681)
63 COG0514 RecQ Superfamily II DN 100.0 2.8E-30 6E-35 311.6 23.6 312 140-493 7-340 (590)
64 PRK09751 putative ATP-dependen 100.0 1.2E-29 2.6E-34 334.4 28.2 290 173-484 1-379 (1490)
65 KOG0344 ATP-dependent RNA heli 100.0 7.7E-30 1.7E-34 298.0 22.6 342 120-492 128-497 (593)
66 TIGR00643 recG ATP-dependent D 100.0 3.3E-29 7.2E-34 318.0 30.2 306 144-488 228-564 (630)
67 KOG0337 ATP-dependent RNA heli 100.0 4.8E-30 1E-34 286.7 16.7 333 124-492 21-370 (529)
68 COG1201 Lhr Lhr-like helicases 100.0 1.2E-28 2.6E-33 307.3 30.2 313 136-478 7-348 (814)
69 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-28 3.4E-33 283.0 28.1 313 157-490 19-481 (542)
70 TIGR01587 cas3_core CRISPR-ass 100.0 1.7E-28 3.8E-33 293.4 26.1 286 171-491 2-337 (358)
71 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-27 5.1E-32 289.4 29.9 468 156-640 114-683 (1230)
72 KOG0352 ATP-dependent DNA heli 100.0 2.6E-28 5.7E-33 271.9 15.5 310 154-494 22-366 (641)
73 COG1197 Mfd Transcription-repa 100.0 3.9E-27 8.5E-32 296.6 24.5 355 44-490 539-913 (1139)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 2.1E-26 4.6E-31 273.6 29.5 286 157-476 2-357 (357)
75 PHA02558 uvsW UvsW helicase; P 99.9 4.1E-26 8.8E-31 283.0 27.6 301 150-482 112-443 (501)
76 TIGR03714 secA2 accessory Sec 99.9 2.7E-25 5.8E-30 276.6 32.5 313 146-491 64-538 (762)
77 PRK09401 reverse gyrase; Revie 99.9 3.2E-26 6.9E-31 302.3 25.0 293 151-477 79-430 (1176)
78 PRK14701 reverse gyrase; Provi 99.9 2.9E-26 6.4E-31 308.0 24.0 323 143-493 70-459 (1638)
79 PRK12898 secA preprotein trans 99.9 1.8E-25 3.8E-30 275.4 26.7 318 143-491 94-587 (656)
80 KOG0351 ATP-dependent DNA heli 99.9 2.1E-26 4.5E-31 293.0 18.3 323 134-494 248-596 (941)
81 KOG0354 DEAD-box like helicase 99.9 1.4E-25 3E-30 273.3 24.5 318 149-490 58-529 (746)
82 PRK09200 preprotein translocas 99.9 4.6E-25 9.9E-30 277.2 29.5 315 143-491 69-542 (790)
83 PRK13766 Hef nuclease; Provisi 99.9 7.7E-25 1.7E-29 286.9 31.2 316 155-492 17-481 (773)
84 COG1205 Distinct helicase fami 99.9 6.8E-24 1.5E-28 272.7 29.4 402 141-563 59-508 (851)
85 TIGR01054 rgy reverse gyrase. 99.9 2.5E-24 5.5E-29 284.9 25.7 279 146-446 72-410 (1171)
86 TIGR00963 secA preprotein tran 99.9 4.3E-24 9.3E-29 264.1 24.7 317 143-491 47-518 (745)
87 KOG0329 ATP-dependent RNA heli 99.9 5.7E-25 1.2E-29 231.2 14.3 292 137-491 49-356 (387)
88 KOG0951 RNA helicase BRR2, DEA 99.9 1.2E-23 2.6E-28 259.3 24.9 420 156-589 313-836 (1674)
89 KOG0948 Nuclear exosomal RNA h 99.9 6.2E-24 1.3E-28 250.8 16.1 321 150-490 126-539 (1041)
90 TIGR00603 rad25 DNA repair hel 99.9 1.4E-22 3.1E-27 252.5 26.6 301 157-492 260-609 (732)
91 COG1200 RecG RecG-like helicas 99.9 2.3E-22 5E-27 241.9 24.9 308 141-490 251-591 (677)
92 PRK05580 primosome assembly pr 99.9 2.9E-22 6.2E-27 255.3 27.1 311 153-486 145-545 (679)
93 KOG0947 Cytoplasmic exosomal R 99.9 1.9E-22 4.2E-27 243.7 23.0 322 149-490 293-723 (1248)
94 PRK09694 helicase Cas3; Provis 99.9 6.5E-22 1.4E-26 253.4 28.7 301 152-479 286-663 (878)
95 COG4581 Superfamily II RNA hel 99.9 4.3E-22 9.3E-27 251.7 24.4 327 146-490 114-537 (1041)
96 TIGR00595 priA primosomal prot 99.9 2.8E-22 6E-27 247.0 20.3 288 173-485 2-376 (505)
97 PRK13104 secA preprotein trans 99.9 1.8E-21 3.8E-26 243.9 26.2 315 152-491 79-588 (896)
98 PRK12904 preprotein translocas 99.9 1.4E-20 2.9E-25 236.1 25.7 317 143-491 72-574 (830)
99 COG4098 comFA Superfamily II D 99.9 5.8E-20 1.3E-24 202.0 24.9 292 158-486 106-412 (441)
100 PRK12906 secA preprotein trans 99.9 3.2E-20 7E-25 231.8 25.1 107 365-491 438-554 (796)
101 COG1061 SSL2 DNA or RNA helica 99.9 7.6E-20 1.6E-24 222.9 27.8 292 154-478 37-376 (442)
102 KOG0349 Putative DEAD-box RNA 99.9 3.5E-21 7.5E-26 215.1 13.6 271 200-489 289-614 (725)
103 PRK11448 hsdR type I restricti 99.8 2.7E-19 5.8E-24 235.7 26.2 312 153-489 414-814 (1123)
104 PRK12899 secA preprotein trans 99.8 4.8E-19 1E-23 221.4 25.0 137 137-277 69-226 (970)
105 PRK13107 preprotein translocas 99.8 2.5E-19 5.4E-24 223.8 22.2 118 352-491 436-592 (908)
106 PRK04914 ATP-dependent helicas 99.8 3.2E-18 7E-23 220.9 24.5 110 355-482 481-595 (956)
107 KOG0950 DNA polymerase theta/e 99.8 2.9E-18 6.3E-23 210.4 21.1 336 137-492 207-613 (1008)
108 COG1203 CRISPR-associated heli 99.8 2.2E-17 4.8E-22 212.7 22.4 291 170-488 216-548 (733)
109 cd00268 DEADc DEAD-box helicas 99.7 6.4E-16 1.4E-20 169.8 19.2 171 137-311 6-187 (203)
110 PRK12900 secA preprotein trans 99.7 4.9E-16 1.1E-20 195.1 18.1 108 365-492 596-713 (1025)
111 PRK12326 preprotein translocas 99.7 6.5E-15 1.4E-19 180.7 25.8 318 143-491 69-548 (764)
112 COG1198 PriA Primosomal protei 99.7 1.2E-15 2.6E-20 190.6 18.4 294 168-485 217-598 (730)
113 PF07717 OB_NTP_bind: Oligonuc 99.6 3.7E-16 8E-21 155.4 8.3 107 671-782 1-112 (114)
114 PF00270 DEAD: DEAD/DEAH box h 99.6 4.5E-15 9.8E-20 157.7 16.8 156 155-314 2-167 (169)
115 COG4096 HsdR Type I site-speci 99.6 3.1E-14 6.8E-19 174.0 24.0 333 152-516 165-574 (875)
116 KOG0949 Predicted helicase, DE 99.6 1.9E-14 4.1E-19 175.6 20.8 159 156-318 514-682 (1330)
117 PRK13103 secA preprotein trans 99.6 2.5E-14 5.4E-19 179.6 22.0 121 151-277 81-213 (913)
118 KOG0953 Mitochondrial RNA heli 99.6 1E-14 2.2E-19 169.6 16.9 279 167-490 190-477 (700)
119 TIGR00348 hsdR type I site-spe 99.6 3.5E-14 7.7E-19 181.4 20.7 306 150-482 236-639 (667)
120 PF04408 HA2: Helicase associa 99.6 3.7E-15 8.1E-20 144.7 9.0 93 539-635 1-102 (102)
121 PRK12903 secA preprotein trans 99.6 9.3E-14 2E-18 172.6 22.1 117 353-491 414-540 (925)
122 KOG0921 Dosage compensation co 99.6 1.6E-16 3.5E-21 191.3 -2.1 436 149-596 402-887 (1282)
123 COG1110 Reverse gyrase [DNA re 99.6 4.4E-13 9.6E-18 165.9 25.6 274 150-446 80-418 (1187)
124 CHL00122 secA preprotein trans 99.6 9.7E-14 2.1E-18 173.7 20.0 127 145-277 69-207 (870)
125 TIGR00631 uvrb excinuclease AB 99.5 4.3E-14 9.4E-19 178.6 15.3 113 365-490 440-553 (655)
126 PRK12902 secA preprotein trans 99.5 1E-12 2.3E-17 164.0 22.6 121 154-277 84-216 (939)
127 TIGR01407 dinG_rel DnaQ family 99.5 6.5E-12 1.4E-16 165.7 30.6 184 299-486 596-811 (850)
128 PLN03142 Probable chromatin-re 99.5 2.1E-12 4.6E-17 167.9 24.6 110 366-493 486-602 (1033)
129 PRK05298 excinuclease ABC subu 99.4 1E-12 2.2E-17 167.6 16.8 112 365-489 444-556 (652)
130 smart00847 HA2 Helicase associ 99.4 1.1E-12 2.4E-17 125.2 8.5 90 539-635 1-92 (92)
131 cd00046 DEXDc DEAD-like helica 99.4 6.7E-12 1.4E-16 127.6 14.3 135 170-308 2-144 (144)
132 KOG4150 Predicted ATP-dependen 99.4 2.8E-12 6.2E-17 148.4 12.3 312 152-483 285-633 (1034)
133 cd00079 HELICc Helicase superf 99.4 2.2E-12 4.8E-17 130.6 10.2 103 366-486 27-131 (131)
134 COG0556 UvrB Helicase subunit 99.4 8E-11 1.7E-15 137.5 23.7 112 365-489 444-556 (663)
135 PF00271 Helicase_C: Helicase 99.3 1.4E-12 3E-17 120.3 5.0 76 386-479 2-78 (78)
136 smart00487 DEXDc DEAD-like hel 99.3 3.1E-11 6.8E-16 130.5 16.4 158 150-309 6-171 (201)
137 PRK07246 bifunctional ATP-depe 99.3 3.1E-10 6.7E-15 147.9 27.3 133 348-486 630-780 (820)
138 KOG1123 RNA polymerase II tran 99.3 1.5E-10 3.3E-15 133.2 18.4 302 155-491 304-654 (776)
139 PF07652 Flavi_DEAD: Flaviviru 99.2 2.3E-11 5E-16 122.2 9.7 136 167-311 3-139 (148)
140 TIGR02562 cas3_yersinia CRISPR 99.2 5.1E-10 1.1E-14 142.3 22.7 90 370-480 759-881 (1110)
141 PRK12901 secA preprotein trans 99.2 1.6E-10 3.4E-15 146.1 15.4 118 353-491 616-742 (1112)
142 PF04851 ResIII: Type III rest 99.1 2.8E-10 6.1E-15 122.3 10.8 132 168-309 25-183 (184)
143 smart00490 HELICc helicase sup 99.1 1.3E-10 2.8E-15 107.4 6.2 80 382-479 2-82 (82)
144 KOG0951 RNA helicase BRR2, DEA 99.1 6.1E-10 1.3E-14 139.9 13.9 324 157-501 1148-1508(1674)
145 PRK08074 bifunctional ATP-depe 99.1 1.1E-08 2.3E-13 136.0 25.7 138 348-486 734-890 (928)
146 PRK14873 primosome assembly pr 99.1 3.4E-09 7.5E-14 134.2 20.1 133 175-317 167-312 (665)
147 KOG0385 Chromatin remodeling c 99.1 8.2E-09 1.8E-13 125.0 21.9 303 166-493 184-602 (971)
148 PF02399 Herpes_ori_bp: Origin 99.0 5.9E-08 1.3E-12 121.2 26.2 299 167-493 48-391 (824)
149 TIGR03117 cas_csf4 CRISPR-asso 99.0 1.4E-07 3E-12 118.4 29.1 126 350-479 454-602 (636)
150 PRK11747 dinG ATP-dependent DN 98.9 2.3E-07 4.9E-12 119.8 29.3 133 348-486 517-671 (697)
151 COG4889 Predicted helicase [Ge 98.9 1.7E-09 3.6E-14 131.3 8.8 320 141-484 150-578 (1518)
152 COG0653 SecA Preprotein transl 98.9 9.4E-09 2E-13 129.0 15.6 107 365-491 427-546 (822)
153 KOG0384 Chromodomain-helicase 98.7 1.9E-07 4E-12 118.7 15.2 132 365-517 697-836 (1373)
154 KOG0387 Transcription-coupled 98.7 1.4E-06 3.1E-11 106.7 22.1 113 366-493 545-661 (923)
155 KOG1000 Chromatin remodeling p 98.7 1.1E-06 2.3E-11 102.4 19.4 280 152-447 200-575 (689)
156 COG1199 DinG Rad3-related DNA 98.6 3.1E-06 6.7E-11 109.9 24.6 134 349-486 462-614 (654)
157 KOG0390 DNA repair protein, SN 98.6 3.5E-06 7.5E-11 106.1 22.6 85 389-491 617-708 (776)
158 TIGR00604 rad3 DNA repair heli 98.6 1.7E-06 3.7E-11 112.6 20.5 132 349-482 505-665 (705)
159 PF06862 DUF1253: Protein of u 98.4 6.9E-05 1.5E-09 90.1 25.2 236 243-493 131-418 (442)
160 KOG0389 SNF2 family DNA-depend 98.2 3.8E-05 8.3E-10 94.5 17.3 112 366-492 776-890 (941)
161 KOG0392 SNF2 family DNA-depend 98.0 0.00013 2.8E-09 93.3 18.4 106 368-491 1341-1455(1549)
162 TIGR01628 PABP-1234 polyadenyl 98.0 0.00031 6.7E-09 89.8 22.5 207 912-1169 1-246 (562)
163 COG0610 Type I site-specific r 98.0 0.00019 4.1E-09 95.7 20.9 133 169-308 274-413 (962)
164 PF00176 SNF2_N: SNF2 family N 98.0 3.8E-05 8.2E-10 89.5 11.5 135 167-309 24-173 (299)
165 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.9 0.00068 1.5E-08 81.3 22.1 130 911-1045 3-158 (352)
166 KOG1002 Nucleotide excision re 97.9 0.00037 8.1E-09 81.5 18.1 108 369-491 640-750 (791)
167 TIGR01628 PABP-1234 polyadenyl 97.8 0.0014 2.9E-08 83.9 22.1 211 913-1178 90-358 (562)
168 TIGR01648 hnRNP-R-Q heterogene 97.8 0.001 2.2E-08 83.1 20.0 210 910-1179 57-302 (578)
169 PRK11889 flhF flagellar biosyn 97.7 0.00093 2E-08 78.9 17.2 123 168-312 241-366 (436)
170 KOG0952 DNA/RNA helicase MER3/ 97.6 2.5E-05 5.3E-10 98.7 3.0 208 170-382 945-1168(1230)
171 PF13604 AAA_30: AAA domain; P 97.6 0.00016 3.6E-09 79.1 8.4 120 156-307 5-130 (196)
172 PF13401 AAA_22: AAA domain; P 97.6 9.8E-05 2.1E-09 74.9 6.0 117 167-306 3-124 (131)
173 PF13245 AAA_19: Part of AAA d 97.6 0.00015 3.2E-09 66.5 6.4 57 161-217 3-62 (76)
174 PRK12726 flagellar biosynthesi 97.6 0.00052 1.1E-08 80.8 12.4 130 166-317 204-336 (407)
175 PF07517 SecA_DEAD: SecA DEAD- 97.5 0.0015 3.3E-08 74.3 15.1 133 143-281 68-212 (266)
176 TIGR00596 rad1 DNA repair prot 97.5 0.001 2.2E-08 86.4 15.3 67 243-310 7-74 (814)
177 KOG2340 Uncharacterized conser 97.5 0.0017 3.6E-08 77.2 15.3 325 148-492 211-670 (698)
178 PF00448 SRP54: SRP54-type pro 97.5 0.0005 1.1E-08 75.2 10.3 127 169-313 2-130 (196)
179 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.4 0.012 2.7E-07 73.5 23.2 67 908-982 93-160 (481)
180 PRK05703 flhF flagellar biosyn 97.4 0.0074 1.6E-07 73.8 20.4 126 167-316 220-350 (424)
181 PRK12724 flagellar biosynthesi 97.4 0.0058 1.3E-07 73.3 18.8 122 168-314 223-350 (432)
182 KOG0386 Chromatin remodeling c 97.4 0.00055 1.2E-08 86.6 10.2 110 365-492 724-840 (1157)
183 PF09848 DUF2075: Uncharacteri 97.4 0.00052 1.1E-08 82.3 9.2 94 169-281 2-97 (352)
184 PRK14722 flhF flagellar biosyn 97.3 0.0092 2E-07 71.2 19.0 126 165-314 134-263 (374)
185 KOG1803 DNA helicase [Replicat 97.3 0.00037 8.1E-09 84.4 7.1 62 156-218 189-250 (649)
186 PRK12723 flagellar biosynthesi 97.3 0.0019 4.2E-08 77.5 13.0 127 168-318 174-307 (388)
187 PRK10875 recD exonuclease V su 97.2 0.0015 3.3E-08 82.9 11.4 135 154-304 154-298 (615)
188 COG1419 FlhF Flagellar GTP-bin 97.2 0.005 1.1E-07 72.9 14.2 128 167-318 202-333 (407)
189 KOG0117 Heterogeneous nuclear 97.1 0.017 3.8E-07 67.4 17.8 206 909-1170 81-321 (506)
190 TIGR01447 recD exodeoxyribonuc 97.1 0.0024 5.3E-08 80.9 12.3 134 155-304 148-292 (586)
191 KOG4439 RNA polymerase II tran 97.1 0.074 1.6E-06 65.8 23.7 93 385-492 764-860 (901)
192 TIGR01642 U2AF_lg U2 snRNP aux 97.1 0.022 4.8E-07 72.0 20.2 239 909-1169 173-491 (509)
193 cd00009 AAA The AAA+ (ATPases 97.0 0.0067 1.4E-07 61.8 12.3 47 159-206 8-56 (151)
194 PF02562 PhoH: PhoH-like prote 97.0 0.0025 5.4E-08 69.7 9.1 57 152-208 3-60 (205)
195 TIGR01622 SF-CC1 splicing fact 97.0 0.057 1.2E-06 67.3 22.0 140 910-1053 88-263 (457)
196 TIGR01448 recD_rel helicase, p 96.9 0.0058 1.3E-07 79.7 12.9 120 154-307 325-452 (720)
197 PRK15483 type III restriction- 96.9 0.0023 5E-08 83.4 9.0 139 167-310 58-240 (986)
198 PRK14974 cell division protein 96.9 0.021 4.5E-07 67.5 16.2 124 168-311 140-267 (336)
199 PRK12727 flagellar biosynthesi 96.9 0.029 6.2E-07 69.2 17.7 127 164-314 346-475 (559)
200 TIGR02768 TraA_Ti Ti-type conj 96.9 0.006 1.3E-07 79.8 12.7 122 154-307 354-476 (744)
201 PRK04296 thymidine kinase; Pro 96.7 0.0019 4.1E-08 70.4 5.7 36 169-205 3-38 (190)
202 PRK10536 hypothetical protein; 96.7 0.0017 3.8E-08 72.8 5.4 59 150-208 56-115 (262)
203 PF13086 AAA_11: AAA domain; P 96.7 0.0025 5.4E-08 71.1 6.8 64 156-219 5-75 (236)
204 TIGR01659 sex-lethal sex-letha 96.7 0.014 2.9E-07 69.5 13.1 122 1004-1169 134-262 (346)
205 PRK13889 conjugal transfer rel 96.7 0.0077 1.7E-07 80.0 12.0 122 154-307 348-470 (988)
206 PRK14723 flhF flagellar biosyn 96.7 0.037 8.1E-07 71.3 17.0 124 167-314 184-311 (767)
207 PF13872 AAA_34: P-loop contai 96.7 0.007 1.5E-07 69.2 9.4 140 168-309 62-221 (303)
208 TIGR01649 hnRNP-L_PTB hnRNP-L/ 96.6 0.24 5.2E-06 62.1 23.2 129 912-1052 3-170 (481)
209 PRK14721 flhF flagellar biosyn 96.5 0.057 1.2E-06 65.6 16.6 127 166-316 189-319 (420)
210 smart00382 AAA ATPases associa 96.5 0.0071 1.5E-07 60.9 7.6 40 168-208 2-41 (148)
211 PRK06731 flhF flagellar biosyn 96.4 0.02 4.2E-07 65.7 11.3 125 167-314 74-202 (270)
212 smart00488 DEXDc2 DEAD-like he 96.4 0.0073 1.6E-07 70.3 7.7 60 160-219 19-83 (289)
213 smart00489 DEXDc3 DEAD-like he 96.4 0.0073 1.6E-07 70.3 7.7 60 160-219 19-83 (289)
214 PRK06995 flhF flagellar biosyn 96.4 0.091 2E-06 64.9 17.2 125 167-315 255-383 (484)
215 PRK08181 transposase; Validate 96.3 0.14 3E-06 58.8 17.3 116 165-318 103-218 (269)
216 PF13307 Helicase_C_2: Helicas 96.3 0.0072 1.6E-07 64.5 6.3 120 365-489 7-148 (167)
217 PRK07952 DNA replication prote 96.2 0.17 3.6E-06 57.4 17.1 114 169-318 100-214 (244)
218 PRK06526 transposase; Provisio 96.1 0.011 2.4E-07 67.3 7.3 39 164-203 94-132 (254)
219 PRK13826 Dtr system oriT relax 96.1 0.031 6.6E-07 74.9 11.9 122 154-307 383-505 (1102)
220 PF05970 PIF1: PIF1-like helic 96.1 0.023 5E-07 68.4 9.9 106 166-293 20-127 (364)
221 PRK08727 hypothetical protein; 96.0 0.033 7.2E-07 62.8 10.5 35 168-203 41-75 (233)
222 TIGR00376 DNA helicase, putati 96.0 0.014 3.1E-07 75.0 8.1 66 154-220 159-224 (637)
223 TIGR03499 FlhF flagellar biosy 95.9 0.067 1.5E-06 62.1 12.3 86 167-275 193-281 (282)
224 TIGR01645 half-pint poly-U bin 95.9 0.067 1.4E-06 67.5 12.9 125 1007-1179 135-279 (612)
225 COG1875 NYN ribonuclease and A 95.8 0.037 8.1E-07 64.1 9.6 57 150-206 225-285 (436)
226 KOG0391 SNF2 family DNA-depend 95.8 0.036 7.7E-07 71.4 10.2 114 365-493 1274-1390(1958)
227 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.8 0.059 1.3E-06 64.6 12.1 124 1003-1170 29-159 (352)
228 PRK10416 signal recognition pa 95.8 0.077 1.7E-06 62.5 12.6 127 167-313 113-249 (318)
229 TIGR02760 TraI_TIGR conjugativ 95.8 0.23 4.9E-06 71.6 19.4 208 154-388 431-647 (1960)
230 PF12340 DUF3638: Protein of u 95.8 0.068 1.5E-06 59.2 11.2 113 138-257 11-144 (229)
231 PHA03333 putative ATPase subun 95.8 0.14 3E-06 64.6 14.7 151 158-319 178-343 (752)
232 PF05729 NACHT: NACHT domain 95.7 0.033 7.2E-07 58.5 8.1 52 269-320 84-142 (166)
233 PF05127 Helicase_RecD: Helica 95.7 0.0069 1.5E-07 64.7 2.7 116 172-308 1-123 (177)
234 KOG0123 Polyadenylate-binding 95.6 0.055 1.2E-06 64.8 10.6 111 1018-1178 36-147 (369)
235 KOG0145 RNA-binding protein EL 95.6 0.06 1.3E-06 58.7 9.5 114 1014-1170 78-197 (360)
236 TIGR01642 U2AF_lg U2 snRNP aux 95.6 0.28 6.1E-06 62.0 17.5 35 1017-1051 221-255 (509)
237 TIGR01645 half-pint poly-U bin 95.6 0.16 3.6E-06 64.1 14.7 141 910-1054 106-282 (612)
238 TIGR01622 SF-CC1 splicing fact 95.6 0.096 2.1E-06 65.2 13.0 128 1005-1180 117-262 (457)
239 PF00580 UvrD-helicase: UvrD/R 95.5 0.028 6E-07 65.9 7.6 63 157-221 4-69 (315)
240 TIGR00064 ftsY signal recognit 95.5 0.12 2.6E-06 59.6 12.3 127 167-313 71-207 (272)
241 PRK09112 DNA polymerase III su 95.4 0.11 2.3E-06 62.2 11.8 50 254-305 129-178 (351)
242 PRK14952 DNA polymerase III su 95.3 0.08 1.7E-06 67.1 11.0 48 256-305 108-155 (584)
243 PRK08903 DnaA regulatory inact 95.2 0.12 2.6E-06 57.9 11.1 37 167-204 41-77 (227)
244 TIGR01425 SRP54_euk signal rec 95.2 0.26 5.6E-06 60.0 14.3 122 168-309 100-225 (429)
245 PRK05642 DNA replication initi 95.2 0.1 2.3E-06 58.8 10.4 49 264-312 95-143 (234)
246 PLN03120 nucleic acid binding 95.2 0.081 1.7E-06 59.4 9.1 75 911-992 4-78 (260)
247 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.18 3.8E-06 56.4 12.1 23 167-189 37-59 (226)
248 PF13173 AAA_14: AAA domain 95.1 0.12 2.5E-06 52.6 9.7 26 167-192 1-26 (128)
249 TIGR02881 spore_V_K stage V sp 95.1 0.11 2.4E-06 59.6 10.7 17 169-185 43-59 (261)
250 PRK06835 DNA replication prote 95.0 0.97 2.1E-05 53.6 18.2 53 264-317 244-297 (329)
251 PRK07003 DNA polymerase III su 95.0 0.17 3.6E-06 64.8 12.3 48 255-304 108-155 (830)
252 PRK14956 DNA polymerase III su 95.0 0.14 3E-06 62.9 11.3 44 262-309 117-160 (484)
253 PRK06893 DNA replication initi 95.0 0.12 2.6E-06 58.2 10.0 50 264-313 89-139 (229)
254 KOG1805 DNA replication helica 95.0 0.042 9.1E-07 70.3 6.8 64 156-220 673-736 (1100)
255 PRK08084 DNA replication initi 94.9 0.13 2.9E-06 58.0 10.3 35 168-203 45-79 (235)
256 PRK13763 putative RNA-processi 94.9 0.17 3.7E-06 54.6 10.4 131 1181-1316 2-156 (180)
257 PRK07764 DNA polymerase III su 94.8 0.11 2.4E-06 68.4 10.7 43 261-305 115-157 (824)
258 PRK12402 replication factor C 94.8 0.29 6.3E-06 58.2 13.3 33 158-190 24-58 (337)
259 COG2805 PilT Tfp pilus assembl 94.6 0.053 1.2E-06 61.4 5.8 24 167-190 124-147 (353)
260 PRK14949 DNA polymerase III su 94.5 0.07 1.5E-06 69.4 7.5 42 261-304 114-155 (944)
261 PLN03121 nucleic acid binding 94.5 0.17 3.7E-06 56.0 9.4 78 909-993 3-80 (243)
262 KOG0388 SNF2 family DNA-depend 94.5 0.13 2.8E-06 63.5 9.2 114 365-493 1042-1157(1185)
263 TIGR03015 pepcterm_ATPase puta 94.5 0.11 2.5E-06 59.6 8.6 24 168-191 43-66 (269)
264 PRK14958 DNA polymerase III su 94.5 0.087 1.9E-06 66.1 8.1 43 261-305 114-156 (509)
265 PRK14951 DNA polymerase III su 94.4 0.27 5.8E-06 62.8 12.3 49 255-305 113-161 (618)
266 PRK14961 DNA polymerase III su 94.4 0.28 6.1E-06 59.1 12.1 50 254-305 107-156 (363)
267 PRK09111 DNA polymerase III su 94.4 0.46 1E-05 60.7 14.4 50 254-305 120-169 (598)
268 KOG1802 RNA helicase nonsense 94.4 0.052 1.1E-06 66.5 5.5 65 156-220 413-477 (935)
269 cd01120 RecA-like_NTPases RecA 94.4 0.21 4.5E-06 52.0 9.6 33 171-204 2-34 (165)
270 PRK12323 DNA polymerase III su 94.3 0.28 6.1E-06 62.0 11.9 48 256-305 114-161 (700)
271 PRK14964 DNA polymerase III su 94.3 0.43 9.3E-06 59.3 13.4 49 255-305 105-153 (491)
272 PRK07994 DNA polymerase III su 94.3 0.094 2E-06 67.0 7.9 47 256-304 109-155 (647)
273 PRK00771 signal recognition pa 94.3 0.39 8.5E-06 58.9 12.9 122 167-310 94-219 (437)
274 PRK06645 DNA polymerase III su 94.3 0.48 1E-05 59.3 13.9 46 254-301 116-161 (507)
275 PRK14960 DNA polymerase III su 94.3 0.12 2.7E-06 65.3 8.7 41 262-304 114-154 (702)
276 COG1444 Predicted P-loop ATPas 94.1 0.39 8.5E-06 61.7 12.7 146 146-309 208-357 (758)
277 PRK09183 transposase/IS protei 94.1 0.36 7.8E-06 55.4 11.5 38 165-203 99-136 (259)
278 COG3587 Restriction endonuclea 94.1 0.15 3.3E-06 64.7 8.8 56 412-485 479-537 (985)
279 PRK08116 hypothetical protein; 94.1 0.29 6.3E-06 56.4 10.6 35 168-203 114-148 (268)
280 PF01695 IstB_IS21: IstB-like 94.0 0.092 2E-06 56.6 6.1 118 163-319 42-160 (178)
281 PRK11054 helD DNA helicase IV; 94.0 0.2 4.2E-06 65.1 10.0 103 152-276 195-302 (684)
282 PRK14957 DNA polymerase III su 93.9 0.21 4.5E-06 62.9 9.8 50 254-305 107-156 (546)
283 PTZ00293 thymidine kinase; Pro 93.9 0.25 5.5E-06 54.3 9.2 39 167-206 3-41 (211)
284 TIGR00763 lon ATP-dependent pr 93.9 0.22 4.7E-06 66.1 10.5 21 168-188 347-367 (775)
285 PRK10867 signal recognition pa 93.8 0.39 8.5E-06 58.8 11.6 123 168-308 100-225 (433)
286 CHL00181 cbbX CbbX; Provisiona 93.8 0.31 6.7E-06 56.7 10.3 19 169-187 60-78 (287)
287 PRK08691 DNA polymerase III su 93.8 0.19 4E-06 64.2 8.9 44 260-305 113-156 (709)
288 PRK00149 dnaA chromosomal repl 93.8 0.37 8E-06 59.9 11.6 36 169-204 149-185 (450)
289 cd01124 KaiC KaiC is a circadi 93.8 0.076 1.6E-06 57.3 4.9 47 171-219 2-48 (187)
290 KOG0989 Replication factor C, 93.7 0.21 4.5E-06 57.0 8.2 41 263-305 126-166 (346)
291 TIGR02782 TrbB_P P-type conjug 93.7 0.14 3E-06 60.0 7.3 55 156-210 120-175 (299)
292 PHA02544 44 clamp loader, smal 93.7 0.4 8.6E-06 56.6 11.2 21 169-189 44-64 (316)
293 cd03247 ABCC_cytochrome_bd The 93.5 0.22 4.8E-06 53.5 8.0 124 166-303 26-152 (178)
294 COG1484 DnaC DNA replication p 93.5 0.69 1.5E-05 52.9 12.3 54 160-215 97-150 (254)
295 PRK00411 cdc6 cell division co 93.5 0.34 7.3E-06 59.1 10.6 22 169-190 56-77 (394)
296 PRK07471 DNA polymerase III su 93.5 0.57 1.2E-05 56.4 12.1 63 244-308 119-181 (365)
297 cd03115 SRP The signal recogni 93.5 0.57 1.2E-05 50.0 11.0 47 264-311 80-127 (173)
298 PRK07133 DNA polymerase III su 93.3 0.62 1.4E-05 60.1 12.7 49 254-304 106-154 (725)
299 PRK13833 conjugal transfer pro 93.3 0.13 2.8E-06 60.5 6.1 53 156-209 132-186 (323)
300 COG2804 PulE Type II secretory 93.3 0.29 6.2E-06 59.8 9.0 38 155-192 244-282 (500)
301 PRK06921 hypothetical protein; 93.2 0.43 9.3E-06 54.9 10.0 37 167-204 116-153 (266)
302 PRK14962 DNA polymerase III su 93.2 0.4 8.6E-06 59.6 10.4 20 170-189 38-57 (472)
303 PRK14712 conjugal transfer nic 93.1 0.51 1.1E-05 65.7 12.1 122 154-307 837-967 (1623)
304 TIGR00959 ffh signal recogniti 93.1 0.58 1.3E-05 57.3 11.5 124 168-309 99-225 (428)
305 TIGR03665 arCOG04150 arCOG0415 93.1 0.5 1.1E-05 50.7 9.7 124 1186-1315 2-149 (172)
306 COG0466 Lon ATP-dependent Lon 93.1 1.4 3E-05 55.8 14.6 111 150-292 324-445 (782)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.0 0.47 1E-05 49.2 9.1 93 166-295 24-116 (144)
308 PF13177 DNA_pol3_delta2: DNA 92.9 0.35 7.6E-06 51.3 8.1 53 254-308 90-142 (162)
309 TIGR00362 DnaA chromosomal rep 92.7 0.6 1.3E-05 57.2 11.1 35 169-204 137-173 (405)
310 PRK05896 DNA polymerase III su 92.6 0.39 8.6E-06 60.7 9.3 50 254-305 107-156 (605)
311 cd01122 GP4d_helicase GP4d_hel 92.6 0.71 1.5E-05 53.2 10.9 54 165-219 27-80 (271)
312 PRK08939 primosomal protein Dn 92.6 0.47 1E-05 55.7 9.3 53 264-317 215-269 (306)
313 PLN03025 replication factor C 92.6 0.84 1.8E-05 54.1 11.7 21 169-189 35-55 (319)
314 PRK14965 DNA polymerase III su 92.5 0.28 6E-06 62.7 8.0 50 254-305 107-156 (576)
315 KOG2004 Mitochondrial ATP-depe 92.5 2 4.2E-05 54.3 14.6 132 130-292 388-533 (906)
316 PF00437 T2SE: Type II/IV secr 92.5 0.14 3E-06 59.1 4.8 47 160-208 119-166 (270)
317 TIGR01547 phage_term_2 phage t 92.4 0.58 1.2E-05 57.2 10.4 135 169-310 2-142 (396)
318 PRK14959 DNA polymerase III su 92.3 0.3 6.6E-06 62.0 7.8 37 256-294 109-145 (624)
319 cd03228 ABCC_MRP_Like The MRP 92.3 0.28 6.1E-06 52.4 6.6 123 166-305 26-151 (171)
320 PRK12422 chromosomal replicati 92.3 0.52 1.1E-05 58.3 9.7 36 169-205 142-177 (445)
321 TIGR00678 holB DNA polymerase 92.3 0.81 1.8E-05 49.6 10.3 48 255-304 85-132 (188)
322 PRK13851 type IV secretion sys 92.3 0.22 4.8E-06 59.2 6.2 49 159-209 153-201 (344)
323 PRK14963 DNA polymerase III su 92.3 0.65 1.4E-05 58.3 10.6 44 258-303 108-151 (504)
324 cd00267 ABC_ATPase ABC (ATP-bi 92.2 0.21 4.5E-06 52.5 5.3 47 249-296 81-127 (157)
325 PRK13894 conjugal transfer ATP 92.2 0.25 5.4E-06 58.3 6.5 54 155-209 135-190 (319)
326 PRK13709 conjugal transfer nic 92.2 0.88 1.9E-05 64.2 12.6 122 154-307 969-1099(1747)
327 PRK14969 DNA polymerase III su 92.1 0.73 1.6E-05 58.3 11.0 49 255-305 108-156 (527)
328 TIGR02880 cbbX_cfxQ probable R 92.1 0.65 1.4E-05 54.0 9.7 35 169-203 59-96 (284)
329 PRK12377 putative replication 92.1 1.9 4.2E-05 49.0 13.3 23 167-189 100-122 (248)
330 PF00004 AAA: ATPase family as 92.1 0.16 3.4E-06 51.2 4.1 19 171-189 1-19 (132)
331 PTZ00112 origin recognition co 91.9 1.1 2.4E-05 58.1 12.0 20 169-188 782-801 (1164)
332 PHA02533 17 large terminase pr 91.9 1.9 4.2E-05 54.4 14.2 159 152-317 58-219 (534)
333 PF01443 Viral_helicase1: Vira 91.9 0.17 3.6E-06 56.8 4.4 21 171-191 1-21 (234)
334 COG0470 HolB ATPase involved i 91.8 0.33 7.1E-06 57.3 7.1 50 254-305 97-146 (325)
335 COG0553 HepA Superfamily II DN 91.8 0.41 8.8E-06 64.6 8.8 109 369-492 713-824 (866)
336 PRK14955 DNA polymerase III su 91.8 0.47 1E-05 58.0 8.4 47 255-303 116-162 (397)
337 PRK08451 DNA polymerase III su 91.7 0.52 1.1E-05 59.1 8.8 43 261-305 112-154 (535)
338 cd03222 ABC_RNaseL_inhibitor T 91.7 0.79 1.7E-05 49.4 9.1 116 165-316 22-138 (177)
339 PRK14087 dnaA chromosomal repl 91.7 0.76 1.7E-05 57.0 10.2 44 169-214 142-187 (450)
340 PF14259 RRM_6: RNA recognitio 91.6 0.61 1.3E-05 41.5 7.0 69 914-987 1-70 (70)
341 TIGR02760 TraI_TIGR conjugativ 91.6 0.73 1.6E-05 66.6 11.2 122 154-307 1021-1149(1960)
342 TIGR01659 sex-lethal sex-letha 91.5 3.1 6.7E-05 49.8 14.7 141 909-1053 105-272 (346)
343 cd03246 ABCC_Protease_Secretio 91.4 0.32 6.9E-06 52.1 5.8 115 166-295 26-142 (173)
344 KOG1131 RNA polymerase II tran 91.4 1.4 3E-05 53.3 11.2 47 131-190 11-57 (755)
345 PRK07940 DNA polymerase III su 91.4 1.2 2.7E-05 54.0 11.4 52 254-308 105-156 (394)
346 PF00076 RRM_1: RNA recognitio 91.3 0.42 9.1E-06 42.2 5.6 65 1060-1169 1-66 (70)
347 PHA03368 DNA packaging termina 91.3 2.8 6.1E-05 53.1 14.3 149 157-318 244-400 (738)
348 cd03214 ABC_Iron-Siderophores_ 91.3 0.84 1.8E-05 49.2 8.9 47 249-296 98-144 (180)
349 TIGR02397 dnaX_nterm DNA polym 91.2 1.4 3.1E-05 52.8 11.7 48 254-303 105-152 (355)
350 PRK14950 DNA polymerase III su 91.2 1.4 3E-05 56.7 12.2 46 256-303 110-155 (585)
351 cd03229 ABC_Class3 This class 91.2 0.72 1.6E-05 49.6 8.2 130 166-307 24-159 (178)
352 PRK05563 DNA polymerase III su 91.1 0.61 1.3E-05 59.4 8.8 40 254-295 107-146 (559)
353 cd01130 VirB11-like_ATPase Typ 91.1 0.48 1.1E-05 51.4 6.9 48 157-206 14-61 (186)
354 PRK13900 type IV secretion sys 91.1 0.28 6.1E-06 58.2 5.4 49 159-209 151-199 (332)
355 COG3421 Uncharacterized protei 91.1 0.62 1.4E-05 57.1 8.1 75 242-316 80-175 (812)
356 TIGR02928 orc1/cdc6 family rep 91.0 0.8 1.7E-05 55.2 9.4 21 169-189 41-61 (365)
357 KOG0148 Apoptosis-promoting RN 91.0 1.2 2.6E-05 49.6 9.5 136 1005-1169 90-227 (321)
358 cd01131 PilT Pilus retraction 91.0 0.29 6.3E-06 53.7 5.0 36 169-204 2-37 (198)
359 PF05496 RuvB_N: Holliday junc 90.9 0.37 8.1E-06 53.3 5.7 19 169-187 51-69 (233)
360 COG2256 MGS1 ATPase related to 90.9 0.89 1.9E-05 53.9 9.0 34 267-308 105-140 (436)
361 PF00076 RRM_1: RNA recognitio 90.9 0.83 1.8E-05 40.3 7.1 69 914-987 1-70 (70)
362 PRK10787 DNA-binding ATP-depen 90.9 1.1 2.4E-05 59.1 11.1 36 151-186 324-367 (784)
363 KOG1132 Helicase of the DEAD s 90.9 1 2.2E-05 57.8 10.1 28 157-184 29-56 (945)
364 PRK10865 protein disaggregatio 90.8 6 0.00013 53.2 17.9 31 170-201 600-630 (857)
365 PRK14088 dnaA chromosomal repl 90.8 1.5 3.4E-05 54.2 11.6 37 169-205 131-168 (440)
366 COG4962 CpaF Flp pilus assembl 90.8 0.5 1.1E-05 55.1 6.8 58 151-210 156-213 (355)
367 PRK07399 DNA polymerase III su 90.7 2.4 5.1E-05 50.1 12.5 58 246-306 104-161 (314)
368 PRK04195 replication factor C 90.7 2.3 4.9E-05 53.5 13.2 25 168-192 39-63 (482)
369 PRK00440 rfc replication facto 90.7 2.1 4.5E-05 50.4 12.3 20 170-189 40-59 (319)
370 PRK14953 DNA polymerase III su 90.6 0.8 1.7E-05 57.3 8.9 48 254-303 107-154 (486)
371 KOG4207 Predicted splicing fac 90.5 0.52 1.1E-05 50.2 6.0 79 1054-1180 10-89 (256)
372 cd03216 ABC_Carb_Monos_I This 90.4 0.56 1.2E-05 49.8 6.4 124 166-316 24-148 (163)
373 PF13555 AAA_29: P-loop contai 90.3 0.3 6.4E-06 42.9 3.4 16 169-184 24-39 (62)
374 COG1435 Tdk Thymidine kinase [ 90.0 1.2 2.7E-05 48.0 8.4 89 168-276 4-92 (201)
375 PF13893 RRM_5: RNA recognitio 90.0 0.82 1.8E-05 39.0 5.9 46 938-989 8-54 (56)
376 PRK14971 DNA polymerase III su 90.0 1.2 2.6E-05 57.3 10.0 50 255-307 110-159 (614)
377 PRK10919 ATP-dependent DNA hel 90.0 0.56 1.2E-05 61.2 7.1 92 168-276 15-112 (672)
378 PRK13342 recombination factor 89.9 1.5 3.2E-05 53.9 10.4 21 169-189 37-57 (413)
379 PRK14948 DNA polymerase III su 89.8 1 2.2E-05 57.9 9.3 47 255-303 110-156 (620)
380 PRK14086 dnaA chromosomal repl 89.8 1.5 3.3E-05 55.6 10.4 36 169-204 315-351 (617)
381 PF00265 TK: Thymidine kinase; 89.8 0.55 1.2E-05 50.5 5.7 37 169-206 2-38 (176)
382 PRK08769 DNA polymerase III su 89.7 2.7 5.9E-05 49.6 11.9 52 254-307 101-152 (319)
383 PF05621 TniB: Bacterial TniB 89.6 1.5 3.2E-05 50.8 9.3 53 169-221 62-120 (302)
384 PRK11773 uvrD DNA-dependent he 89.6 0.85 1.8E-05 60.2 8.5 90 168-276 22-118 (721)
385 TIGR02868 CydC thiol reductant 89.5 0.83 1.8E-05 58.1 8.2 36 166-202 359-394 (529)
386 TIGR02525 plasmid_TraJ plasmid 89.5 0.64 1.4E-05 56.0 6.6 22 166-187 147-168 (372)
387 KOG0741 AAA+-type ATPase [Post 89.5 1.6 3.5E-05 53.1 9.6 107 169-314 539-655 (744)
388 PF01637 Arch_ATPase: Archaeal 89.4 0.97 2.1E-05 50.1 7.8 31 160-190 10-42 (234)
389 COG1474 CDC6 Cdc6-related prot 89.4 1.8 3.9E-05 52.2 10.3 28 263-291 120-149 (366)
390 cd01129 PulE-GspE PulE/GspE Th 89.1 0.78 1.7E-05 52.7 6.7 47 157-204 68-115 (264)
391 KOG1015 Transcription regulato 89.1 1.8 3.8E-05 55.8 9.9 140 365-519 1140-1319(1567)
392 PRK11823 DNA repair protein Ra 89.0 0.59 1.3E-05 57.9 6.1 51 167-219 79-129 (446)
393 PRK14954 DNA polymerase III su 89.0 1.6 3.4E-05 56.1 9.9 48 256-305 117-164 (620)
394 PRK06647 DNA polymerase III su 88.9 1.1 2.5E-05 56.9 8.6 35 258-294 111-145 (563)
395 TIGR01074 rep ATP-dependent DN 88.9 1.1 2.3E-05 58.9 8.6 92 168-277 14-112 (664)
396 PRK06620 hypothetical protein; 88.9 0.92 2E-05 50.5 6.9 18 169-186 45-62 (214)
397 TIGR01075 uvrD DNA helicase II 88.8 0.87 1.9E-05 60.1 7.7 90 168-276 17-113 (715)
398 PRK05707 DNA polymerase III su 88.7 0.6 1.3E-05 55.4 5.6 49 254-304 94-142 (328)
399 PF00308 Bac_DnaA: Bacterial d 88.7 1.2 2.6E-05 49.8 7.7 36 169-205 35-72 (219)
400 PF05876 Terminase_GpA: Phage 88.7 0.66 1.4E-05 59.1 6.2 67 156-222 19-88 (557)
401 cd03230 ABC_DR_subfamily_A Thi 88.6 0.51 1.1E-05 50.5 4.5 115 166-296 24-142 (173)
402 PRK09087 hypothetical protein; 88.6 1.6 3.6E-05 48.9 8.7 19 168-186 44-62 (226)
403 PF00013 KH_1: KH domain syndr 88.6 0.53 1.2E-05 40.9 3.8 45 1266-1311 14-60 (60)
404 COG0552 FtsY Signal recognitio 88.6 3.3 7.1E-05 48.4 11.1 123 169-311 140-272 (340)
405 PTZ00454 26S protease regulato 88.5 5.6 0.00012 48.6 13.8 23 167-189 178-200 (398)
406 TIGR03345 VI_ClpV1 type VI sec 88.5 1.8 3.8E-05 58.0 10.3 61 251-317 657-727 (852)
407 TIGR02788 VirB11 P-type DNA tr 88.4 0.71 1.5E-05 54.4 5.9 46 161-208 137-182 (308)
408 PRK10436 hypothetical protein; 88.4 0.87 1.9E-05 56.4 6.9 33 157-189 206-239 (462)
409 COG1134 TagH ABC-type polysacc 88.3 0.27 5.9E-06 54.6 2.2 71 245-318 144-215 (249)
410 PRK08533 flagellar accessory p 88.3 2 4.4E-05 48.4 9.2 37 166-203 22-58 (230)
411 cd03223 ABCD_peroxisomal_ALDP 88.3 1.8 3.9E-05 46.0 8.4 32 263-295 106-137 (166)
412 PRK13341 recombination factor 88.2 2.1 4.4E-05 56.1 10.4 20 169-188 53-72 (725)
413 COG1126 GlnQ ABC-type polar am 88.2 0.56 1.2E-05 51.3 4.4 37 165-202 25-61 (240)
414 TIGR01420 pilT_fam pilus retra 88.1 0.68 1.5E-05 55.4 5.6 40 167-206 121-160 (343)
415 PRK06067 flagellar accessory p 88.1 1.1 2.3E-05 50.6 6.9 51 167-219 24-74 (234)
416 PRK06871 DNA polymerase III su 88.1 0.82 1.8E-05 54.0 6.1 51 254-306 95-145 (325)
417 PRK06964 DNA polymerase III su 88.0 1.6 3.4E-05 52.1 8.4 54 252-307 118-171 (342)
418 KOG2028 ATPase related to the 87.9 2.2 4.7E-05 49.8 8.9 28 161-188 153-182 (554)
419 PRK07993 DNA polymerase III su 87.9 0.71 1.5E-05 54.9 5.4 50 254-305 96-145 (334)
420 cd00590 RRM RRM (RNA recogniti 87.8 3.3 7.1E-05 36.1 8.6 71 914-989 2-73 (74)
421 TIGR00631 uvrb excinuclease AB 87.7 1.2 2.7E-05 57.6 7.9 67 152-222 9-79 (655)
422 TIGR01648 hnRNP-R-Q heterogene 87.5 2.4 5.1E-05 53.8 10.0 67 1014-1081 94-162 (578)
423 CHL00095 clpC Clp protease ATP 87.5 13 0.00028 49.9 17.5 56 252-313 601-666 (821)
424 PRK14970 DNA polymerase III su 87.3 2.2 4.8E-05 51.5 9.4 20 169-188 40-59 (367)
425 COG3972 Superfamily I DNA and 87.2 2.9 6.2E-05 50.6 9.7 78 141-221 152-230 (660)
426 COG0542 clpA ATP-binding subun 87.1 24 0.00052 46.2 18.6 120 169-316 522-651 (786)
427 COG0541 Ffh Signal recognition 87.1 4.8 0.00011 48.5 11.6 132 168-318 100-236 (451)
428 PF00931 NB-ARC: NB-ARC domain 87.1 0.93 2E-05 52.5 5.8 33 159-191 6-42 (287)
429 TIGR02538 type_IV_pilB type IV 87.0 1.1 2.4E-05 57.2 6.8 34 156-189 303-337 (564)
430 PHA02244 ATPase-like protein 86.9 1.7 3.6E-05 51.9 7.7 34 157-190 108-141 (383)
431 PRK06305 DNA polymerase III su 86.9 2.3 5.1E-05 52.7 9.4 41 262-304 117-157 (451)
432 COG5008 PilU Tfp pilus assembl 86.8 0.63 1.4E-05 51.9 3.8 38 165-202 124-161 (375)
433 COG1136 SalX ABC-type antimicr 86.7 0.75 1.6E-05 51.2 4.5 19 166-184 29-47 (226)
434 cd03239 ABC_SMC_head The struc 86.6 2.9 6.3E-05 45.1 8.9 42 264-306 114-156 (178)
435 TIGR02524 dot_icm_DotB Dot/Icm 86.6 0.75 1.6E-05 55.2 4.7 21 167-187 133-153 (358)
436 KOG0733 Nuclear AAA ATPase (VC 86.5 2.1 4.5E-05 53.1 8.2 20 167-186 222-241 (802)
437 PF14259 RRM_6: RNA recognitio 86.5 1.5 3.2E-05 39.1 5.5 65 1060-1169 1-66 (70)
438 COG3973 Superfamily I DNA and 86.5 0.99 2.1E-05 55.8 5.6 54 167-220 225-283 (747)
439 cd03215 ABC_Carb_Monos_II This 86.5 2.3 4.9E-05 45.9 8.0 66 249-316 105-170 (182)
440 cd01393 recA_like RecA is a b 86.4 1.1 2.4E-05 50.0 5.8 27 166-192 17-43 (226)
441 PF03354 Terminase_1: Phage Te 86.2 2.2 4.8E-05 53.5 8.9 134 171-309 25-165 (477)
442 PLN03134 glycine-rich RNA-bind 86.2 2.2 4.9E-05 44.3 7.4 73 1059-1179 36-109 (144)
443 PRK08058 DNA polymerase III su 85.8 1.1 2.4E-05 53.2 5.7 48 255-304 99-146 (329)
444 cd03238 ABC_UvrA The excision 85.8 2.6 5.7E-05 45.4 8.0 42 263-305 102-146 (176)
445 PRK03992 proteasome-activating 85.8 3.6 7.8E-05 50.2 10.1 22 168-189 165-186 (389)
446 TIGR02785 addA_Gpos recombinat 85.7 1.1 2.5E-05 62.4 6.5 134 154-292 3-141 (1232)
447 smart00362 RRM_2 RNA recogniti 85.7 3.6 7.8E-05 35.6 7.7 69 914-988 2-71 (72)
448 PRK04841 transcriptional regul 85.7 3.2 6.8E-05 56.5 10.7 34 158-191 19-55 (903)
449 cd02394 vigilin_like_KH K homo 85.7 0.66 1.4E-05 40.6 2.8 48 1264-1311 11-61 (62)
450 KOG0122 Translation initiation 85.6 1.6 3.5E-05 48.0 6.1 67 1056-1166 188-255 (270)
451 cd02393 PNPase_KH Polynucleoti 85.6 0.93 2E-05 39.7 3.6 42 1269-1311 18-60 (61)
452 TIGR03877 thermo_KaiC_1 KaiC d 85.5 0.94 2E-05 51.2 4.6 52 167-220 20-71 (237)
453 cd01121 Sms Sms (bacterial rad 85.4 1.2 2.5E-05 53.8 5.6 51 167-219 81-131 (372)
454 PF12846 AAA_10: AAA-like doma 85.3 0.8 1.7E-05 53.2 4.1 43 168-211 1-43 (304)
455 COG2909 MalT ATP-dependent tra 85.2 3.3 7.1E-05 53.6 9.5 137 158-309 24-171 (894)
456 COG1120 FepC ABC-type cobalami 85.0 0.94 2E-05 51.4 4.2 47 166-213 26-78 (258)
457 KOG0148 Apoptosis-promoting RN 85.0 3 6.6E-05 46.5 7.9 62 910-981 163-225 (321)
458 PRK05564 DNA polymerase III su 84.9 5.3 0.00011 47.2 10.8 46 258-305 85-130 (313)
459 cd03213 ABCG_EPDR ABCG transpo 84.9 2.2 4.7E-05 46.6 7.0 44 263-307 126-169 (194)
460 TIGR01243 CDC48 AAA family ATP 84.5 3.1 6.8E-05 55.1 9.5 24 168-191 487-510 (733)
461 COG0593 DnaA ATPase involved i 84.4 6.2 0.00013 47.9 10.9 42 266-307 175-217 (408)
462 KOG0391 SNF2 family DNA-depend 84.4 2.4 5.2E-05 55.7 7.7 133 166-307 632-774 (1958)
463 KOG0991 Replication factor C, 84.3 2.1 4.6E-05 47.0 6.3 19 169-187 49-67 (333)
464 TIGR01073 pcrA ATP-dependent D 84.3 2.4 5.2E-05 56.2 8.3 91 168-276 17-113 (726)
465 COG2812 DnaX DNA polymerase II 84.2 1.3 2.9E-05 55.0 5.4 52 254-309 107-158 (515)
466 TIGR02974 phageshock_pspF psp 84.2 4.3 9.3E-05 48.3 9.6 33 159-192 13-45 (329)
467 KOG2228 Origin recognition com 84.0 9.4 0.0002 44.6 11.4 129 167-311 48-184 (408)
468 PF13207 AAA_17: AAA domain; P 83.9 0.9 1.9E-05 45.2 3.2 18 170-187 1-18 (121)
469 KOG0123 Polyadenylate-binding 83.9 34 0.00073 41.4 16.9 209 922-1170 8-236 (369)
470 COG0630 VirB11 Type IV secreto 83.9 1.7 3.8E-05 51.1 6.0 56 151-208 126-181 (312)
471 cd00984 DnaB_C DnaB helicase C 83.8 0.93 2E-05 51.2 3.6 40 164-203 9-48 (242)
472 smart00492 HELICc3 helicase su 83.8 2.9 6.2E-05 43.3 6.9 82 401-482 31-129 (141)
473 PRK06090 DNA polymerase III su 83.8 1.9 4E-05 50.9 6.1 52 254-307 96-147 (319)
474 TIGR03689 pup_AAA proteasome A 83.7 4.1 8.8E-05 51.1 9.3 19 168-186 216-234 (512)
475 PRK05973 replicative DNA helic 83.6 1.2 2.5E-05 50.3 4.2 60 159-220 55-114 (237)
476 smart00361 RRM_1 RNA recogniti 83.6 3.5 7.5E-05 37.0 6.5 51 938-988 16-69 (70)
477 TIGR02655 circ_KaiC circadian 83.5 1.6 3.5E-05 54.8 5.9 52 167-220 262-313 (484)
478 CHL00176 ftsH cell division pr 83.5 5.3 0.00011 51.7 10.5 21 169-189 217-237 (638)
479 PRK15177 Vi polysaccharide exp 83.4 1.4 3E-05 49.0 4.7 20 166-185 11-30 (213)
480 PRK08699 DNA polymerase III su 83.3 1.7 3.7E-05 51.5 5.6 49 253-303 100-148 (325)
481 PRK05580 primosome assembly pr 83.2 2.7 5.9E-05 55.0 7.9 73 366-439 189-263 (679)
482 PHA00350 putative assembly pro 83.2 3 6.4E-05 50.5 7.6 33 170-203 3-35 (399)
483 TIGR00602 rad24 checkpoint pro 83.1 6.4 0.00014 50.7 11.0 22 167-188 109-130 (637)
484 PF02367 UPF0079: Uncharacteri 82.9 2 4.4E-05 43.3 5.1 46 158-207 5-50 (123)
485 PRK05986 cob(I)alamin adenolsy 82.9 4.1 8.9E-05 44.3 7.8 37 167-204 21-57 (191)
486 COG1131 CcmA ABC-type multidru 82.8 2.4 5.1E-05 49.6 6.5 45 263-308 151-196 (293)
487 TIGR00635 ruvB Holliday juncti 82.8 2.4 5.3E-05 49.7 6.7 30 536-565 271-301 (305)
488 TIGR02533 type_II_gspE general 82.7 2.4 5.2E-05 53.1 6.9 33 157-189 230-263 (486)
489 TIGR03819 heli_sec_ATPase heli 82.7 2.1 4.5E-05 51.1 6.1 51 157-209 167-217 (340)
490 PF03237 Terminase_6: Terminas 82.7 10 0.00023 45.1 12.4 131 172-308 1-137 (384)
491 COG3839 MalK ABC-type sugar tr 82.7 1.3 2.8E-05 52.3 4.3 21 165-185 26-46 (338)
492 TIGR03375 type_I_sec_LssB type 82.6 6 0.00013 52.2 11.0 41 263-304 616-656 (694)
493 PRK13763 putative RNA-processi 82.6 3.8 8.2E-05 44.3 7.5 110 1268-1380 18-145 (180)
494 PRK06904 replicative DNA helic 82.4 3.7 8E-05 51.3 8.4 68 152-220 204-272 (472)
495 COG1222 RPT1 ATP-dependent 26S 82.4 11 0.00024 44.4 11.4 54 123-185 147-202 (406)
496 TIGR03665 arCOG04150 arCOG0415 82.2 4.7 0.0001 43.3 8.0 110 1269-1381 14-140 (172)
497 KOG1015 Transcription regulato 82.2 7.8 0.00017 50.3 10.8 138 174-317 702-868 (1567)
498 PF13481 AAA_25: AAA domain; P 81.9 1.9 4.1E-05 46.8 5.0 54 167-221 31-93 (193)
499 TIGR03346 chaperone_ClpB ATP-d 81.8 5.5 0.00012 53.7 10.2 43 146-188 167-214 (852)
500 TIGR00150 HI0065_YjeE ATPase, 81.7 2.7 5.8E-05 43.0 5.6 31 159-189 13-43 (133)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-127 Score=1121.51 Aligned_cols=616 Identities=44% Similarity=0.712 Sum_probs=576.3
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcC
Q 000621 144 ECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRG 223 (1387)
Q Consensus 144 ~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~ 223 (1387)
.+...+..||++.++.+|+..+++++++||.|+||||||||+||+|++.++...++|.||||||++|+++|+||++++ +
T Consensus 42 ~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~-~ 120 (674)
T KOG0922|consen 42 SIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEM-G 120 (674)
T ss_pred CHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHh-C
Confidence 345566899999999999999999999999999999999999999999999998999999999999999999999998 4
Q ss_pred CCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 224 CYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 224 ~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
+..|..|||..+|++..+..|+|.|+|+|+|+|++..|+.|++|++|||||||||++.+|++++++|.+...|+++|+|+
T Consensus 121 ~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIi 200 (674)
T KOG0922|consen 121 CQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLII 200 (674)
T ss_pred CCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHH
Q 000621 304 MSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWA 383 (1387)
Q Consensus 304 mSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l 383 (1387)
||||+|++.|++||.+++++.++||+|||+++|.+.+. .+|+++.+..+.+||.++++|+||||++|++||+.+
T Consensus 201 mSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~------~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 201 MSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPT------ADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred EeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCc------hhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999765 899999999999999999999999999999999999
Q ss_pred HHHhcCC--------CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCC
Q 000621 384 CEKFDAP--------SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTG 454 (1387)
Q Consensus 384 ~~~L~~~--------~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~ 454 (1387)
++.|.+. ...++|+||.||.++|.++|+.. +|.||||+||||||++||||+|.||||+|+.|...|||.+|
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999752 12478999999999999999998 69999999999999999999999999999999999999999
Q ss_pred cccceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcH
Q 000621 455 MNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSA 534 (1387)
Q Consensus 455 ~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~ 534 (1387)
++.|.+.|||++++.||+|||||++||+|||||++++|+.|++.+.|||+|++|..++|+||++|++|+..|+|+|||++
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~ 434 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPP 434 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeccCCccccCH-HHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchh
Q 000621 535 KAIEMAIRNLVQLGAIKLNNGVFELTE-EGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDE 613 (1387)
Q Consensus 535 ~~l~~al~~L~~lgal~~~~~~~~lT~-lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~ 613 (1387)
+++..|++.|+.+||||.+| .||. +|+.|+.+|++|.++|+|+.|..+||.+|+++|||+|+ .+++|+++.....
T Consensus 435 ~~l~~AL~~L~~lgald~~g---~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Ls-v~~~f~~p~~~~~ 510 (674)
T KOG0922|consen 435 EALEEALEELYSLGALDDRG---KLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLS-VQSVFSRPKDKKA 510 (674)
T ss_pred HHHHHHHHHHHhcCcccCcC---CcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeee-ccceecCccchhh
Confidence 99999999999999999766 6887 99999999999999999999999999999999999996 7889988765433
Q ss_pred hhHHHHhhhhhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccCCC
Q 000621 614 KIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNP 693 (1387)
Q Consensus 614 ~~~~~~~~~~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~~~ 693 (1387)
. +++..+.+|.+++|||+|+|++|+.|.. ++.+++||++||||+++|+++.++|+||.+++ +.+++...+.
T Consensus 511 ~-~a~~~~~kf~~~eGDh~tlL~vy~~~~~--~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~-~~~~~~~~s~----- 581 (674)
T KOG0922|consen 511 E-DADRKRAKFANPEGDHLTLLNVYESWKE--NGTSKKWCKENFINARSLKRAKDIRKQLRRIL-DKFGLPVSSC----- 581 (674)
T ss_pred h-hhhHHHHhhcCcccCHHHHHHHHHHHHh--cCChhhHHHHhcccHHHHHHHHHHHHHHHHHH-HHcCCCccCC-----
Confidence 3 5889999999999999999999999988 77889999999999999999999999999998 5566544221
Q ss_pred CCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeeeecccC
Q 000621 694 HKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFD 773 (1387)
Q Consensus 694 ~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~vt~I~ 773 (1387)
..+.+.+++|||+|||.|+|+++..+ ||+++.+|+.|+|||||+| |..+|+||+|+|++.|+|.|||+||+|+
T Consensus 582 ---~~d~~~i~k~l~aGff~N~A~~~~~~--~Yrti~~~~~v~IHPSS~l--~~~~p~~viy~el~~Ttk~Y~r~Vt~i~ 654 (674)
T KOG0922|consen 582 ---GGDMEKIRKCLCAGFFRNVAERDYQD--GYRTIRGGQPVYIHPSSVL--FRRKPEWVIYHELLQTTKEYMRNVTAID 654 (674)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHhhcCC--CeEEccCCcEEEEechHHh--hcCCCCEEEEEEEeecchHhHhheeecC
Confidence 12346899999999999999997332 5999999999999999999 7778999999999999999999999999
Q ss_pred hhhHhhhCCCCccc
Q 000621 774 FDSLSTLCPSPLFD 787 (1387)
Q Consensus 774 ~~wl~~~~~~~~~~ 787 (1387)
++||.+++| ++|.
T Consensus 655 ~~wL~e~ap-~~~~ 667 (674)
T KOG0922|consen 655 PEWLLELAP-HFFK 667 (674)
T ss_pred HHHHHHhCc-hHhh
Confidence 999999999 5553
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-122 Score=1060.82 Aligned_cols=625 Identities=37% Similarity=0.617 Sum_probs=580.7
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCe-EEEeccHHHHHHHHHHHHHH
Q 000621 141 IVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQS-IVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 141 ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~-Ilv~~P~r~LA~qla~rv~~ 219 (1387)
....++..+..||++.++++++.+++.++|++|.|+||||||||+||||.+.+++.+++ |.||||||++|+++|.||++
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999999999999999999998876 99999999999999999999
Q ss_pred HhcCCCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCc
Q 000621 220 ESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDL 299 (1387)
Q Consensus 220 ~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~ 299 (1387)
++ ++..|..|||.+++++..+..|.|.|||+|||++.++.+|.|..|++|||||||||++.+|++.++++.+.+.||++
T Consensus 333 EM-gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 333 EM-GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred Hh-CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 98 55667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHH
Q 000621 300 RLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKME 379 (1387)
Q Consensus 300 kiIlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~e 379 (1387)
+++++|||+|++.|+.||.++|++.+|||.|||+++|.+.+. .+|++.++..+.+||.+.+.|+||||++++++
T Consensus 412 KllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PE------AdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPE------ADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCc------hhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999999999999999999999999999999999999876 89999999999999999999999999999999
Q ss_pred HHHHHHHhcC---------CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccc
Q 000621 380 VEWACEKFDA---------PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYF 449 (1387)
Q Consensus 380 ie~l~~~L~~---------~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~y 449 (1387)
++.+.+.|.. ..+.++|+|++||.+.|.+||++. +|.+|||+||||||++|||++|.||||.|++|.+.|
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 9998887753 456799999999999999999998 899999999999999999999999999999999999
Q ss_pred cCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccccccc-CCCCCCcchhccchHHHHHHHHHcCCCCCCCccc
Q 000621 450 EPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFET-RPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDF 528 (1387)
Q Consensus 450 d~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~-~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ 528 (1387)
+|++||++|.+.|||++++.||+|||||+|||+||+||+...|.. +...+.|||+|++|.+++|.|+++||+|+.+|||
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdF 645 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDF 645 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccccc
Confidence 999999999999999999999999999999999999999999975 8888899999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCccccc
Q 000621 529 IDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRV 608 (1387)
Q Consensus 529 ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~ 608 (1387)
+||||.++|..|++.|++||||+..| .||.+||.|++||+||+++|||+.+-.++|.+|+++||||+|...++|+++
T Consensus 646 mDpPp~etL~~aLE~LyaLGALn~~G---eLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrp 722 (902)
T KOG0923|consen 646 LDPPPTETLLKALEQLYALGALNHLG---ELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRP 722 (902)
T ss_pred CCCCChHHHHHHHHHHHHhhcccccc---chhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecc
Confidence 99999999999999999999998766 799999999999999999999999999999999999999999999999776
Q ss_pred CCchhhhHHHHhhhhhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCcc
Q 000621 609 GSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSY 688 (1387)
Q Consensus 609 ~~~~~~~~~~~~~~~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~ 688 (1387)
. ++...++.++..|..+.|||+++|++|++|.. .+.+.+||.+||+++++|+++.+++.||..++.+ .++...+
T Consensus 723 k--~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~e--s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~-v~~~~~s- 796 (902)
T KOG0923|consen 723 K--DKQVHADNARKNFEEPVGDHIVLLNVYNQWKE--SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLER-VEIDLSS- 796 (902)
T ss_pred h--hhhhhhhhhhhccCCCCcchhhhhHHHHHHhh--cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh-ccccccC-
Confidence 4 45566788888999999999999999999987 7788999999999999999999999999988754 2221111
Q ss_pred ccCCCCCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeee
Q 000621 689 WLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVC 768 (1387)
Q Consensus 689 ~~~~~~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~ 768 (1387)
.......|++++.+|||+|+|+.+... .|.++...+.|++||.|+| |...|.||+|++++.|++.|||.
T Consensus 797 -------~~~~~~~irk~i~aGff~h~a~l~~~g--~y~tvk~~~tv~~hp~S~l--~~~~P~wvvy~eLv~tske~mr~ 865 (902)
T KOG0923|consen 797 -------NQNDLDKIRKAITAGFFYHTAKLSKGG--HYRTVKHPQTVSIHPNSGL--FEQLPRWVVYHELVLTSKEFMRQ 865 (902)
T ss_pred -------ChHHHHHHHHHHhccccccceeccCCC--cceeeccCcceeecCcccc--cccCCceEEEeehhcChHHHHHH
Confidence 011235799999999999999986321 3999988888999999999 78899999999999999999999
Q ss_pred ecccChhhHhhhCCCCccccccccc
Q 000621 769 VTAFDFDSLSTLCPSPLFDVSMMER 793 (1387)
Q Consensus 769 vt~I~~~wl~~~~~~~~~~~~~~~~ 793 (1387)
++.+.++||.+++| |||....+++
T Consensus 866 ~~e~e~~Wlie~ap-hyyk~kdled 889 (902)
T KOG0923|consen 866 VIEIEEEWLIEVAP-HYYKLKDLED 889 (902)
T ss_pred HHhhhhhHHHHhch-hhhhhhhccc
Confidence 99999999999999 8997665553
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-121 Score=1056.83 Aligned_cols=613 Identities=37% Similarity=0.628 Sum_probs=574.1
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcC
Q 000621 144 ECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRG 223 (1387)
Q Consensus 144 ~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~ 223 (1387)
.++..+..||++..+++++..+..|++++|+|+||||||||++|||++.++..++.|.|+||||++|+++|+||+++++.
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 36667789999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 224 CYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 224 ~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
..|..|||.++|++..++.|.|.|+|+|+|++....+..|.+|++||+||||||++++|.+.++++.+...|.++++|+
T Consensus 427 -~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 427 -TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred -ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHH
Q 000621 304 MSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWA 383 (1387)
Q Consensus 304 mSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l 383 (1387)
+|||++++.|.+||++||.+.++||+|||++.|...+. .+|++..+....+||...++|.||||.+++++++..
T Consensus 506 tSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~------eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPV------EDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred eeccccHHHHHHHhCCCceeeecCCccceEEEeccCch------HHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 99999999999999999999999999999999998765 899999999999999999999999999999999988
Q ss_pred HHHhcC--------C--CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCC
Q 000621 384 CEKFDA--------P--SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPG 452 (1387)
Q Consensus 384 ~~~L~~--------~--~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~ 452 (1387)
+..+.. . ++.++|+|+.||.+-|.++|+.. .|.+||||||||||+++|||+|.||||+|+.|...|||.
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 776642 2 67899999999999999999987 899999999999999999999999999999999999999
Q ss_pred CCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc-cCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCC
Q 000621 453 TGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE-TRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDA 531 (1387)
Q Consensus 453 ~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~-~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~ 531 (1387)
.||+.|.+.|||++++.||+|||||+|||.||+||++..|. .|.+.+.|||+|++|.+++|.|+++|++++..|+|+||
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~ 739 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDP 739 (1042)
T ss_pred cccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCC
Confidence 99999999999999999999999999999999999998886 69999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCc
Q 000621 532 PSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSD 611 (1387)
Q Consensus 532 P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~ 611 (1387)
|+.+.+..|+-.|..+|||+..| .||++|+.|++|||||.++||||.++.+||.+|+++|++||| ++.+|+++.
T Consensus 740 Pped~~~~sly~Lw~LGAl~~~g---~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLS-vp~VF~rpk-- 813 (1042)
T KOG0924|consen 740 PPEDNLLNSLYQLWTLGALDNTG---QLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLS-VPAVFYRPK-- 813 (1042)
T ss_pred CHHHHHHHHHHHHHHhhccccCC---ccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhc-ccceeeccc--
Confidence 99999999999999999998765 799999999999999999999999999999999999999985 678997764
Q ss_pred hhhhHHHHhhhhhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccC
Q 000621 612 DEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLW 691 (1387)
Q Consensus 612 ~~~~~~~~~~~~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~ 691 (1387)
+..++++.++.+|+++.|||||+||+|++|.. ++.+..||.+|||+.++|+++.++|.||..+| +++++...+
T Consensus 814 er~eead~ar~Kf~~~~sDhLTlLNVf~qw~~--~~~~~~WCnd~~l~~kaL~~arevR~ql~~il-~~l~~~l~S---- 886 (1042)
T KOG0924|consen 814 EREEEADAAREKFQVPESDHLTLLNVFNQWRK--NKYSSMWCNDHYLQVKALKKAREVRRQLLEIL-KQLKLPLIS---- 886 (1042)
T ss_pred cchhhhhhHHhhhcCCCCchhhHHHHHHHHHh--cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHcCCCccc----
Confidence 44567888999999999999999999999987 78889999999999999999999999999998 456554432
Q ss_pred CCCCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCC-CCCEEEEEEecccccceeeeec
Q 000621 692 NPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQ-KPTWVVFGELLSVNNQYLVCVT 770 (1387)
Q Consensus 692 ~~~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~-~p~wvvy~el~~t~~~yir~vt 770 (1387)
+.+++.+++|||+|||.|+|++.|.. .|..+.+|..++|||||+| ++. .|+||||||++.|+++||.|||
T Consensus 887 -----~~dwdivrKCIcs~~fhn~Arlkg~g--~YV~~~tg~~c~lHPsS~L--~g~y~p~Yivyhel~~T~keym~cvT 957 (1042)
T KOG0924|consen 887 -----SDDWDIVRKCICSAYFHNAARLKGIG--EYVNLSTGIPCHLHPSSVL--HGLYTPDYIVYHELLMTTKEYMQCVT 957 (1042)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHhccCc--eEEEccCCcceeecchHhh--hcCCCCCeeeehHHHHhHHHHHHHHh
Confidence 24678999999999999999998642 2889999999999999999 554 8999999999999999999999
Q ss_pred ccChhhHhhhCCCCcc
Q 000621 771 AFDFDSLSTLCPSPLF 786 (1387)
Q Consensus 771 ~I~~~wl~~~~~~~~~ 786 (1387)
+|+|+||.+++| .||
T Consensus 958 ~v~~~wl~E~gp-~~y 972 (1042)
T KOG0924|consen 958 SVSPEWLAELGP-MFY 972 (1042)
T ss_pred hCCHHHHHHhCc-eeE
Confidence 999999999999 444
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-117 Score=990.37 Aligned_cols=632 Identities=34% Similarity=0.574 Sum_probs=580.7
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC 202 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv 202 (1387)
+++|. | .+++.-+..+++.. ..||+|.|+.+++..+.+|+.++++|+||||||||+|||+++......+.|.|
T Consensus 24 ~Npf~--~-~p~s~rY~~ilk~R----~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~C 96 (699)
T KOG0925|consen 24 INPFN--G-KPYSQRYYDILKKR----RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVAC 96 (699)
T ss_pred cCCCC--C-CcCcHHHHHHHHHH----hcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceee
Confidence 66776 3 56766666666654 46999999999999999999999999999999999999999987776789999
Q ss_pred eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccch
Q 000621 203 TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNT 282 (1387)
Q Consensus 203 ~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~ 282 (1387)
+||+|.+|+++|.||+++| ....|..|||.+++++..+.+|-+.|||+|||++..++++.+..+++||+||||||++.+
T Consensus 97 TQprrvaamsva~RVadEM-Dv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlAT 175 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEM-DVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLAT 175 (699)
T ss_pred cCchHHHHHHHHHHHHHHh-ccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHH
Confidence 9999999999999999998 455678999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcccCccEEeecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhh
Q 000621 283 DLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVH 362 (1387)
Q Consensus 283 d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 362 (1387)
|.+.++++.+...++++|+|+||||++..+|+.||+++|++.++| ++||+++|.+.+. .+|++.+.+++.+||
T Consensus 176 DiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~e------rDylEaairtV~qih 248 (699)
T KOG0925|consen 176 DILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPE------RDYLEAAIRTVLQIH 248 (699)
T ss_pred HHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCC------hhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999876 899999999999999
Q ss_pred hccCCCcEEEEeCCHHHHHHHHHHhcC---------CCCceEeccCCCCHhhhhhhhccCC------CceEEEEecchhh
Q 000621 363 TTEKEGTILAFLTSKMEVEWACEKFDA---------PSAVALPFHGQLSFDEQFCVFKSYP------GRRKVIFATNVAE 427 (1387)
Q Consensus 363 ~~~~~g~iLVF~~s~~eie~l~~~L~~---------~~~~v~~lh~~l~~~er~~v~~~f~------g~~kVLVaT~iae 427 (1387)
..+.+|+||||+++.++|+.+|+.+.. ....++|+| +.+|.++|+..+ -.+||+|+||+||
T Consensus 249 ~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 249 MCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred hccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 999999999999999999999998862 346799999 777888888752 2579999999999
Q ss_pred cCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc-cCCCCCCcchhcc
Q 000621 428 TSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE-TRPLNQEPEIHRV 506 (1387)
Q Consensus 428 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~-~~~~~~~pEi~r~ 506 (1387)
++++|++|.+|||.|+.+.++|||+-...+|...||||+++.||+|||||+.||+||+||+++.++ .|.+.+.|||+|+
T Consensus 325 tsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrs 404 (699)
T KOG0925|consen 325 TSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRS 404 (699)
T ss_pred eeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 5999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhc
Q 000621 507 HLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRR 586 (1387)
Q Consensus 507 ~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~ 586 (1387)
+|.+++|++|.+||+++..|+|+|||.++++.+|++.|..++|||.+| .||++|..|++||+||.++|||+.|++|+
T Consensus 405 NL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdG---nLT~lG~imSEFPLdPqLAkmLi~S~efn 481 (699)
T KOG0925|consen 405 NLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDG---NLTSLGEIMSEFPLDPQLAKMLIGSCEFN 481 (699)
T ss_pred hhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCc---ccchhhhhhhcCCCChHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999998766 69999999999999999999999999999
Q ss_pred chHHHHHHhHHhcCCCCcccccCCchhhhHHHHhhhhhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHH
Q 000621 587 LGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRC 666 (1387)
Q Consensus 587 c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~ 666 (1387)
|.+|+++|+||++ +++.|.++.. +.++.|+.++..|.|.+|||+|++|+|.+|++ ++...+||++||||+++|+.|
T Consensus 482 CsnEiLsisAMLs-vPncFvRp~~-~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq--~~~~~~WC~~~flN~ral~~A 557 (699)
T KOG0925|consen 482 CSNEILSISAMLS-VPNCFVRPTS-SASKAADEAKETFAHIDGDHLTLLNVYHAFKQ--NNEDPNWCYDNFLNYRALKSA 557 (699)
T ss_pred chHHHHHHHhccc-CCccccCCCh-hHHHHHHHHHHHhccCCcchHHHHHHHHHHHh--cCCChhHHHHhcccHHHHHhH
Confidence 9999999999884 7889988753 56778999999999999999999999999998 678889999999999999999
Q ss_pred HHHHHHHHHHHHH-hhccccCccccCCCCCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccc
Q 000621 667 QDTIKELETCLEK-ELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLI 745 (1387)
Q Consensus 667 ~~~r~qL~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~ 745 (1387)
.++|.||..+|.+ ++....+.| .+.++..+|+++|++|||.+||+..... +|.++..++.|++|||++|
T Consensus 558 d~vR~qL~rim~R~~L~~~st~F------~S~~y~~nirKALvsgyFmqVA~~~~~~--~Ylt~kdnqvvqLhps~~l-- 627 (699)
T KOG0925|consen 558 DNVRQQLLRIMDRFNLPLCSTDF------GSRDYYVNIRKALVSGYFMQVAHLERGG--HYLTVKDNQVVQLHPSTCL-- 627 (699)
T ss_pred HHHHHHHHHHHHHhcCcccCCCC------CChhHHHHHHHHHHHHHHHHHHhhccCC--ceEEEecCceEEecccccc--
Confidence 9999999999865 343333333 2234567899999999999999986432 5999999999999999997
Q ss_pred cCCCCCEEEEEEecccccceeeeecccChhhHhhhCCCCcccccccc
Q 000621 746 FGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMME 792 (1387)
Q Consensus 746 ~~~~p~wvvy~el~~t~~~yir~vt~I~~~wl~~~~~~~~~~~~~~~ 792 (1387)
..+|+||+|+|++.|+++|+|+||.|.|+||.+++| +||+.+.+.
T Consensus 628 -~~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP-~YydlsNfp 672 (699)
T KOG0925|consen 628 -DHKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAP-QYYDLSNFP 672 (699)
T ss_pred -CCCCCeEEEeeEEeeccceeeeecccCHHHHHHhch-hhcccccCC
Confidence 589999999999999999999999999999999999 899887664
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-106 Score=1040.73 Aligned_cols=641 Identities=32% Similarity=0.494 Sum_probs=565.8
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDD 228 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~ 228 (1387)
...||++..+++|+.++.++++++|+|+||||||||+|+++++.+.+..+.|+|+||+|++|.++|.+++++++. ..|.
T Consensus 70 ~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~-~lG~ 148 (1294)
T PRK11131 70 PENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELET-ELGG 148 (1294)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhh-hhcc
Confidence 346999999999999999999999999999999999999999887666678999999999999999999999853 3466
Q ss_pred cEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 229 SVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 229 ~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
.+||..++++..+.+++|+|||||+|+++++.++.++++++|||||||||++++||++++++.+...++++|+|+||||+
T Consensus 149 ~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 149 CVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred eeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCC
Confidence 89999999988888999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred CHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhc
Q 000621 309 DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFD 388 (1387)
Q Consensus 309 ~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~ 388 (1387)
+.+.|+++|.+++++.++|+.+||+++|.+..........+++..++..+.+++ ....|++||||||+.+|+.+++.|.
T Consensus 229 d~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~ 307 (1294)
T PRK11131 229 DPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALN 307 (1294)
T ss_pred CHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987643111112344555555555554 3567999999999999999999998
Q ss_pred CCCC---ceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 389 APSA---VALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 389 ~~~~---~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
..++ .+.++||+|++++|.++|+. .|.++||||||+||+|||||+|+||||+|+.|.+.||+.++++.|...|+|+
T Consensus 308 ~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~-~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSk 386 (1294)
T PRK11131 308 KLNLRHTEILPLYARLSNSEQNRVFQS-HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQ 386 (1294)
T ss_pred hcCCCcceEeecccCCCHHHHHHHhcc-cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCH
Confidence 7654 47899999999999999987 4779999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHHH
Q 000621 466 SSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLV 545 (1387)
Q Consensus 466 a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L~ 545 (1387)
++|.||+|||||.++|.||+||++++|..+++++.|||+|++|.+++|+++++|+.++..|+|+|||+.++|..|++.|.
T Consensus 387 asa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~ 466 (1294)
T PRK11131 387 ASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLE 466 (1294)
T ss_pred hhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeccC--CccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchhhhHHHHhhhh
Q 000621 546 QLGAIKLNN--GVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQ 623 (1387)
Q Consensus 546 ~lgal~~~~--~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~ 623 (1387)
.+|||+.++ +...||++|+.|++||+||++||||+.|..+||++++++|||+|+. .++|.++ .+++++++.++.+
T Consensus 467 ~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p--~~~~~~a~~~~~~ 543 (1294)
T PRK11131 467 ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSI-QDPRERP--MDKQQASDEKHRR 543 (1294)
T ss_pred HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCC--chhHHHHHHHHHh
Confidence 999998642 2357999999999999999999999999999999999999999964 5678654 4667788899999
Q ss_pred hcCCCCcHHHHHHHHHHHhcCC----cccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccCCCCCCchh
Q 000621 624 FCHRNGDLFTLLSVYREWDSLP----REERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEY 699 (1387)
Q Consensus 624 f~~~~gD~lt~l~~~~~~~~~~----~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~~~~~~~~~ 699 (1387)
|.+.+|||++++|+|+.|.... .+..++||++||||+++|+++.+++.||..++ +++|+...+ ...+
T Consensus 544 f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~-~~~g~~~~~--------~~~~ 614 (1294)
T PRK11131 544 FADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVV-KELGIPVNS--------EPAE 614 (1294)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH-HHcCCCCCC--------Cccc
Confidence 9999999999999999997521 23346899999999999999999999999988 557764421 1224
Q ss_pred hHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeeeecccChhhHhh
Q 000621 700 DKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLST 779 (1387)
Q Consensus 700 ~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~vt~I~~~wl~~ 779 (1387)
.+.|+++|++||++|||+.... . +++....+..++|||+|+| |+.+|+||||+|++.|++.|||+|+.|+|+||.+
T Consensus 615 ~~~i~~all~G~~~nva~~~~~-~-~~y~~~~~~~~~ihP~S~L--~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~ 690 (1294)
T PRK11131 615 YREIHTALLTGLLSHIGMKDAE-K-QEYTGARNARFSIFPGSGL--FKKPPKWVMVAELVETSRLWGRIAARIEPEWIEP 690 (1294)
T ss_pred HHHHHHHHHhhcHHHHeeccCC-C-CeEEccCCcEEEEcCCccc--cCCCCCEEEEEeeeccChhhhhhhcccCHHHHHH
Confidence 5689999999999999987642 2 2344456889999999999 7789999999999999999999999999999999
Q ss_pred hCCCCccccc----cccccccee---eeecccchHHH
Q 000621 780 LCPSPLFDVS----MMERKKLHV---RVITGFGSILL 809 (1387)
Q Consensus 780 ~~~~~~~~~~----~~~~~k~~~---~~~t~~~~~~l 809 (1387)
++| +++..+ +|+++...+ +.+|.+|.++.
T Consensus 691 ~a~-~l~~~~y~ePhw~~~~g~v~a~e~vtl~Gl~iv 726 (1294)
T PRK11131 691 LAQ-HLIKRSYSEPHWEKAQGAVMATEKVTLYGLPIV 726 (1294)
T ss_pred HHH-HhccccCCCCcccccCCeEEEEEEEEEcCeEEE
Confidence 988 554333 777766554 78888888875
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-102 Score=1002.11 Aligned_cols=640 Identities=34% Similarity=0.506 Sum_probs=561.1
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDD 228 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~ 228 (1387)
...||++.++++|+.+|.++++++|+|+||||||||+|+++++.+....++|+|+||||++|.++|.+++++++ ...|.
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg-~~lG~ 141 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELG-TPLGE 141 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhC-CCcce
Confidence 34699999999999999999999999999999999999999998777677999999999999999999999984 55677
Q ss_pred cEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 229 SVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 229 ~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
.|||..++++..+.+++|+|+|||+|++++..++.++++++|||||||||++++|+++++++.+...++++|+|+||||+
T Consensus 142 ~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATl 221 (1283)
T TIGR01967 142 KVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATI 221 (1283)
T ss_pred EEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred CHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhc
Q 000621 309 DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFD 388 (1387)
Q Consensus 309 ~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~ 388 (1387)
+.+.|++||.+++++.++|+.|||+++|.+..........++.+.+...+.+++. ...|++|||+||+.+|+.+++.|.
T Consensus 222 d~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 222 DPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred CHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999875321111112344555566666554 367999999999999999999998
Q ss_pred CC---CCceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 389 AP---SAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 389 ~~---~~~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
.. ++.+.++||+|++++|.++|+.+. .++||||||+||+|||||+|+||||+|+++...||+.++++.|.+.|+|+
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISk 379 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQQRVFQPHS-GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQ 379 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHHHHHhCCCC-CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCH
Confidence 64 456999999999999999988763 48999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHHH
Q 000621 466 SSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLV 545 (1387)
Q Consensus 466 a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L~ 545 (1387)
++|.||+|||||.++|.||+||+++++..+++++.|||+|++|.+++|+++++|+.++..|+|+|||+..++..|++.|.
T Consensus 380 asa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~ 459 (1283)
T TIGR01967 380 ASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLE 459 (1283)
T ss_pred HHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchhhhHHHHhhhhhc
Q 000621 546 QLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFC 625 (1387)
Q Consensus 546 ~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f~ 625 (1387)
.+||||.+++...||++|+.|+.||+||++||||+.|..+||++++++|||+|+. .++|.++ .+++++++.++.+|.
T Consensus 460 ~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p--~~~~~~a~~~~~~f~ 536 (1283)
T TIGR01967 460 ELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSI-QDPRERP--MEKQQAADQAHARFK 536 (1283)
T ss_pred HCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCc--chhHHHHHHHHHHhc
Confidence 9999987654457999999999999999999999999999999999999999975 5567543 466788899999999
Q ss_pred CCCCcHHHHHHHHHHHhcCC----cccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccCCCCCCchhhH
Q 000621 626 HRNGDLFTLLSVYREWDSLP----REERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDK 701 (1387)
Q Consensus 626 ~~~gD~lt~l~~~~~~~~~~----~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 701 (1387)
+.+|||++++|+|+.|.... .+..++||++||||+.+|+++.+++.||..++ +++|+.... ...+..
T Consensus 537 ~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~-~~~~~~~~~--------~~~~~~ 607 (1283)
T TIGR01967 537 DPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVV-KELGLKLNE--------EPADYD 607 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH-HHcCCCcCC--------CCccHH
Confidence 99999999999999997532 12346899999999999999999999998887 446653211 112234
Q ss_pred HHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeeeecccChhhHhhhC
Q 000621 702 WLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLC 781 (1387)
Q Consensus 702 ~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~vt~I~~~wl~~~~ 781 (1387)
.++++|++||++|||++... ..|.+ .+|+.++|||+|+| ++.+|+||||+|++.|++.||+++++|+|+||.+++
T Consensus 608 ~i~~~l~~g~~~~iA~~~~~--~~y~~-~~g~~~~ihP~S~L--~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~ 682 (1283)
T TIGR01967 608 AIHKALLSGLLSQIGMKDEK--HEYDG-ARGRKFHIFPGSPL--FKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVA 682 (1283)
T ss_pred HHHHHHHHhhHHHHheeCCC--CcEEe-cCCcEEEECCCccc--cCCCCCEEEEeeecccchheEeeeccCCHHHHHHHh
Confidence 69999999999999987642 23655 56889999999999 667899999999999999999999999999999999
Q ss_pred CCCccccc----cccccccee---eeecccchHHH
Q 000621 782 PSPLFDVS----MMERKKLHV---RVITGFGSILL 809 (1387)
Q Consensus 782 ~~~~~~~~----~~~~~k~~~---~~~t~~~~~~l 809 (1387)
| +++..+ +|+.++..+ +..|-+|.+++
T Consensus 683 ~-~~~~~~~~~~~w~~~~g~v~a~~~~~~~G~~il 716 (1283)
T TIGR01967 683 G-HLIKKNYFEPHWEKKRGQVMAYEKVTLYGLTLV 716 (1283)
T ss_pred H-HHhEeccCceeeccCCCeEEEEEehhhcCCEEe
Confidence 9 555333 565443333 35567777765
No 7
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1e-99 Score=939.87 Aligned_cols=683 Identities=31% Similarity=0.451 Sum_probs=580.0
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--CCCeEEEeccHHHHHHHHHHH
Q 000621 139 AFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA--AEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 139 ~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~Ilv~~P~r~LA~qla~r 216 (1387)
..-.+.+...+..||++.++++|++++..+++++|+|+||||||||+||++++.... ...+|+|+||||+.|+++|+|
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 345667777888999999999999999999999999999999999999999997432 345899999999999999999
Q ss_pred HHHHhcCCCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc
Q 000621 217 VREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR 296 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~ 296 (1387)
|+.+. +...+..|||..+.++..+..+.++|||.|.|++.++.++.+.++++||+||+|||++++||++.+++.++..+
T Consensus 239 Va~ER-~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 239 VAKER-GESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN 317 (924)
T ss_pred HHHHh-ccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC
Confidence 99998 44556899999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEeecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCC---------Cc----------------cchhhH
Q 000621 297 FDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAG---------TS----------------AVASYV 351 (1387)
Q Consensus 297 ~~~kiIlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~---------~~----------------~~~~~~ 351 (1387)
|++|+|+||||+|.+.|++||+++|+++++|++|||..+|+.+..+. .. ...-..
T Consensus 318 p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 318 PDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred CCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 99999999999999999999999999999999999998887654310 00 000112
Q ss_pred HHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC-------CCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 352 SDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA-------PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 352 ~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~-------~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
..+...+.+|+.....|.||||+||.++|..+++.|.. ..+.+.++|+.|+..+|..+|... .|.+|||+||
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 34566777888887899999999999999999999863 236789999999999999999998 7999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCC-CCCcc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPL-NQEPE 502 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~-~~~pE 502 (1387)
||||+|||||||.||||+|+.|+..|||.++++.|...|+|++++.||+|||||..+|.||+||++..|+.+.. ++.||
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PE 557 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPE 557 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776 99999
Q ss_pred hhccchHHHHHHHHHcCCCCCCCc--cccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHH
Q 000621 503 IHRVHLGIAVLRILALGIRDVQGF--DFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLIL 580 (1387)
Q Consensus 503 i~r~~L~~~~L~l~~lgi~~~~~f--~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll 580 (1387)
|+|.+|++++|++|.+++.++..| ..+|||+.+++..|+..|..+|||+.++ .||+||++++.||+||++|||++
T Consensus 558 ilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e---~LT~LG~~la~lPvd~~igK~ll 634 (924)
T KOG0920|consen 558 ILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESE---ELTPLGLHLASLPVDVRIGKLLL 634 (924)
T ss_pred HHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcc---cchHHHHHHHhCCCccccchhhe
Confidence 999999999999999999888877 6899999999999999999999999766 79999999999999999999999
Q ss_pred HHhhhcchHHHHHHhHHhcCCCCcccccCCchhhhHHHHhhhhhcCCC-CcHHHHHHHHHHHhcCCcc---cchhhhhhc
Q 000621 581 SCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRN-GDLFTLLSVYREWDSLPRE---ERNKWCWEN 656 (1387)
Q Consensus 581 ~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~-gD~lt~l~~~~~~~~~~~~---~~~~wc~~n 656 (1387)
.|..|+|++++++|||+|+ ..+||.. +.++++.+++++..|.... |||++++++|+.|...... ....||++|
T Consensus 635 ~g~if~cLdp~l~iaa~Ls-~k~PF~~--~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~ 711 (924)
T KOG0920|consen 635 FGAIFGCLDPALTIAAALS-FKSPFVS--PLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEEN 711 (924)
T ss_pred ehhhccccchhhhHHHHhc-cCCCccc--CCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 9999999999999999998 4567743 4456677788888887554 9999999999999875543 567999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhccccCccc----cCCCCCCchhhHHHHHHHHHhcchhhhhhcCCCCCCc-EE--e
Q 000621 657 SVNAKSLRRCQDTIKELETCLEKELAIIIPSYW----LWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGY-EV--A 729 (1387)
Q Consensus 657 ~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy-~~--~ 729 (1387)
|||..+|+++.+++.|+...+ .++|+...+.. ..+.+.++.+.+.++++||+|||||+|+......+.. .. .
T Consensus 712 fLs~~~l~~i~~l~~q~~~~l-~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~ 790 (924)
T KOG0920|consen 712 FLSSNTLQEISSLRVQFLELL-SDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVT 790 (924)
T ss_pred hccHHHHHHHHHHHHHHHHHh-hhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeec
Confidence 999999999999999999887 55676654311 1111223445678999999999999998763111111 11 2
Q ss_pred ecCceEEECCCCcccccCC-CCCEEEEEEeccccc-ceeeeecccChhhHhhhCCCCcccccccccccceeeeecccchH
Q 000621 730 MTGQHVQLHPSCSLLIFGQ-KPTWVVFGELLSVNN-QYLVCVTAFDFDSLSTLCPSPLFDVSMMERKKLHVRVITGFGSI 807 (1387)
Q Consensus 730 ~~~~~v~IHPsS~L~~~~~-~p~wvvy~el~~t~~-~yir~vt~I~~~wl~~~~~~~~~~~~~~~~~k~~~~~~t~~~~~ 807 (1387)
....++.|||+|+...... ..+|++|+|.++|++ .|+|++|.+.+-.+..+++...+ ....+-+..
T Consensus 791 ~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~------------~~~~~~~~~ 858 (924)
T KOG0920|consen 791 KADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIST------------VRMKSGSLA 858 (924)
T ss_pred CCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCcee------------ecCCCCccc
Confidence 2334899999998743322 235999999999998 99999999999998888772211 111111212
Q ss_pred HH--H-HhhccCCcchHHHHHHHHHhhhhhhhhheecccc
Q 000621 808 LL--K-KFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQ 844 (1387)
Q Consensus 808 ~l--~-~~~~~~~~~~~~li~~lR~~~~d~~i~~~~~~~~ 844 (1387)
++ + +..-.....+..++++||.. +|+.+..++ .+
T Consensus 859 ~~~~d~~~~~~~~~~~~~~~~~Lr~~-l~~~l~~~~--~~ 895 (924)
T KOG0920|consen 859 LLLPDGWLRFKALPKTARLLKELRRE-LDSLLSKKI--RS 895 (924)
T ss_pred eecCCceEEeecchhHHHHHHHHHHH-HHHHHHHhc--cC
Confidence 21 2 22333336677899999999 999999999 77
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-98 Score=930.34 Aligned_cols=626 Identities=36% Similarity=0.513 Sum_probs=544.9
Q ss_pred HHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCC
Q 000621 145 CKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGC 224 (1387)
Q Consensus 145 l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~ 224 (1387)
+......||++..+.+|..++..+++++|+||||||||||+|+++++.++..+++|+|+||||++|.++|+|++++++ +
T Consensus 42 ~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~-~ 120 (845)
T COG1643 42 ILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELG-E 120 (845)
T ss_pred hhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhC-C
Confidence 344567899999999999999999999999999999999999999999998888999999999999999999999984 4
Q ss_pred CCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhccc-CccEEe
Q 000621 225 YEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRF-DLRLVI 303 (1387)
Q Consensus 225 ~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~-~~kiIl 303 (1387)
..|..|||..++++..+.+|+|.|||+|+|+++++.|+.|+.|++|||||||||++++|+++++++.+...++ ++|+|+
T Consensus 121 ~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 121 KLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred CcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 5567999999999999999999999999999999999999999999999999999999999999999776555 799999
Q ss_pred ecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhh-HHHHHHHHHHhhhccCCCcEEEEeCCHHHHHH
Q 000621 304 MSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASY-VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEW 382 (1387)
Q Consensus 304 mSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~ 382 (1387)
||||+|.+.|++||+++|++.++||+|||+++|.+... .++ +++.+.....++..+..|+||||+|++++|+.
T Consensus 201 mSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~------~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAE------ADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCC------cchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 99999999999999999999999999999999988754 444 67777777777777889999999999999999
Q ss_pred HHHHhcC----CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCccc
Q 000621 383 ACEKFDA----PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNV 457 (1387)
Q Consensus 383 l~~~L~~----~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~ 457 (1387)
+++.|.+ ....++|+||.|+.++|.++|+.. .|++|||+||||||||||||+|+||||+|+.|.+.||+.+|++.
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999987 458899999999999999999998 67799999999999999999999999999999999999999999
Q ss_pred ceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCC-CCCCccccCCCcHHH
Q 000621 458 LRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIR-DVQGFDFIDAPSAKA 536 (1387)
Q Consensus 458 L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~-~~~~f~~ld~P~~~~ 536 (1387)
|.+.||||+++.||+|||||++||+||+||++++|..|+.++.|||+|++|.+++|+++++|++ |+..|+|+|||+..+
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~ 434 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAA 434 (845)
T ss_pred eeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCC--CcccccCCchhh
Q 000621 537 IEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANAS--SIFCRVGSDDEK 614 (1387)
Q Consensus 537 l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~--~~f~~~~~~~~~ 614 (1387)
+..|++.|..+||||..+ .||++|+.|+.||+||++|+||+.+..+||.+++++|||+|+..+ +.|.+..+....
T Consensus 435 i~~A~~~L~~LGAld~~g---~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~ 511 (845)
T COG1643 435 IQAALTLLQELGALDDSG---KLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQ 511 (845)
T ss_pred HHHHHHHHHHcCCcCCCC---CCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhH
Confidence 999999999999998766 699999999999999999999999999999999999999997654 146544333221
Q ss_pred -hHHHHhh-hhhcC---CCCcHHHHHHHHHHHhcCCc----ccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000621 615 -IKADCLK-VQFCH---RNGDLFTLLSVYREWDSLPR----EERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIII 685 (1387)
Q Consensus 615 -~~~~~~~-~~f~~---~~gD~lt~l~~~~~~~~~~~----~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~ 685 (1387)
.+.+.++ ..+.+ +.+||++++++|..|..... -...+||..+++++++|.++..++.++.....+-.+.+.
T Consensus 512 ~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~ 591 (845)
T COG1643 512 RTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRIL 591 (845)
T ss_pred HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchh
Confidence 1233333 44555 67999999999999987321 146789999999999999999888887655432122221
Q ss_pred Ccc-ccCCC---------CCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEE
Q 000621 686 PSY-WLWNP---------HKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVF 755 (1387)
Q Consensus 686 ~~~-~~~~~---------~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy 755 (1387)
... ..++. ...+..++.+.+++++|++.|++.+..... .|.+..++..+++||+|+ ......++|+.|
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~v-~~~~~~~~~~~~ 669 (845)
T COG1643 592 AAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGR-PYVTLSDNTPVFAHPSSV-RLGLVLLEWIKY 669 (845)
T ss_pred hhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeecccc-ccccCCCCceeEecchhH-hhcccCcchHHH
Confidence 100 00100 001114567899999999999998875433 378888889999999995 336678899999
Q ss_pred EEecccccceee-----------eecccChhhHhhhCC
Q 000621 756 GELLSVNNQYLV-----------CVTAFDFDSLSTLCP 782 (1387)
Q Consensus 756 ~el~~t~~~yir-----------~vt~I~~~wl~~~~~ 782 (1387)
++.+.+++.|++ +++++..+||.+..+
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~ 707 (845)
T COG1643 670 AEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVK 707 (845)
T ss_pred HHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhcc
Confidence 999999999999 477777778766655
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-98 Score=871.91 Aligned_cols=619 Identities=33% Similarity=0.480 Sum_probs=541.1
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC-----CeEEEeccHHHHHHHHHHHH
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE-----QSIVCTQPRKIAAISLAQRV 217 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-----~~Ilv~~P~r~LA~qla~rv 217 (1387)
.++++.+..||+....+.|+++|..|+++||||+||||||||+||||++++++.. +.|.||+|||.+|+.+|+||
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999999988754 58899999999999999999
Q ss_pred HHHhcCCCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc-
Q 000621 218 REESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR- 296 (1387)
Q Consensus 218 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~- 296 (1387)
+.+++. .+..|+|.++++....+.+.|.|||+|+|++.+++|..|..|+.|||||||||++++|.+.+++.++..+|
T Consensus 326 a~EL~~--~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 326 AFELGV--LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHhcc--CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 999865 46789999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred ---------cCccEEeecccCCHHHHH---HHhcc-CCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhh
Q 000621 297 ---------FDLRLVIMSATADAHQLS---KYFYD-CGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHT 363 (1387)
Q Consensus 297 ---------~~~kiIlmSATl~~~~~~---~~f~~-~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 363 (1387)
..+++|+||||+-.+.|. ..|.. .|++.++.|+|||.++|..... .+|+.++.+....||+
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~------~DYi~eAfrKtc~IH~ 477 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTP------DDYIAEAFRKTCKIHK 477 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCC------chHHHHHHHHHHHHhh
Confidence 368999999999887776 44543 6799999999999999987643 6999999999999999
Q ss_pred ccCCCcEEEEeCCHHHHHHHHHHhcC------------------------------------------------------
Q 000621 364 TEKEGTILAFLTSKMEVEWACEKFDA------------------------------------------------------ 389 (1387)
Q Consensus 364 ~~~~g~iLVF~~s~~eie~l~~~L~~------------------------------------------------------ 389 (1387)
..++|.||||++++.+++++|+.|++
T Consensus 478 kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~ 557 (1172)
T KOG0926|consen 478 KLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELV 557 (1172)
T ss_pred cCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhh
Confidence 99999999999999999999998853
Q ss_pred ---------------------------------------------CCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 390 ---------------------------------------------PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 390 ---------------------------------------------~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
....|+|||+-|+.++|.++|+.. .|.+-+||||
T Consensus 558 ~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaT 637 (1172)
T KOG0926|consen 558 DSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVAT 637 (1172)
T ss_pred cccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEec
Confidence 012489999999999999999998 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc-cCCCCCCcc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE-TRPLNQEPE 502 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~-~~~~~~~pE 502 (1387)
|+||+++|||+|+||||+|+.|+..||..+|++...++|||++++-||+|||||+|||+|||||+..-|+ .++.+..||
T Consensus 638 NVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PE 717 (1172)
T KOG0926|consen 638 NVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPE 717 (1172)
T ss_pred cchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 699999999
Q ss_pred hhccchHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHH
Q 000621 503 IHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSC 582 (1387)
Q Consensus 503 i~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~ 582 (1387)
|++.+.++++|+|++|+|+++.+|||++||.+.+++.|...|..|||||.+| .||+||+.|+.||+.|++||||+.+
T Consensus 718 Ilk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g---~lT~lGk~mS~FPlsPrfsKmL~~~ 794 (1172)
T KOG0926|consen 718 ILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNG---GLTKLGKAMSLFPLSPRFSKMLATS 794 (1172)
T ss_pred HhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccC---CcccccchhcccccChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866 7999999999999999999999999
Q ss_pred hhhcchHHHHHHhHHhcCCCCccccc------------CCch------------------hhhHHHHhhhhhcCCCCcHH
Q 000621 583 FRRRLGREGLVLAAVMANASSIFCRV------------GSDD------------------EKIKADCLKVQFCHRNGDLF 632 (1387)
Q Consensus 583 ~~~~c~~~~l~iaA~l~~~~~~f~~~------------~~~~------------------~~~~~~~~~~~f~~~~gD~l 632 (1387)
.+++|+.-.+.++|+|+.. .+|... .+++ .+.+...++.+|...++|-|
T Consensus 795 ~Q~~~lpy~i~lvsaLsv~-e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l 873 (1172)
T KOG0926|consen 795 DQHNLLPYNIALVSALSVY-EVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDAL 873 (1172)
T ss_pred HhhcchhHHHHHHHHHhcc-chhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHH
Confidence 9999999999999988754 344311 1111 01122234557878889999
Q ss_pred HHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhh-ccccCccccCCCCC--C-chhhHHHHHHHH
Q 000621 633 TLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKEL-AIIIPSYWLWNPHK--Y-TEYDKWLKEIIL 708 (1387)
Q Consensus 633 t~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l-~~~~~~~~~~~~~~--~-~~~~~~i~~~l~ 708 (1387)
+++.+..+++. ..+...||..|||..++|.++.++|.||..++.+.. ..+.. .|+... + ..+...++.+||
T Consensus 874 ~Ll~Av~a~ey--~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~---~~d~~l~ppt~~q~~lLrQ~i~ 948 (1172)
T KOG0926|consen 874 VLLSAVSAAEY--AENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEK---SWDLTLKPPTDTQAKLLRQMIC 948 (1172)
T ss_pred HHHHHHHHHHh--hhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---hcccCCCCCchHHHHHHHHHHH
Confidence 99999998887 344455999999999999999999999988775311 00000 122211 1 234467999999
Q ss_pred HhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccccceeee-ecccChhhHhhhCC
Q 000621 709 SALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVNNQYLVC-VTAFDFDSLSTLCP 782 (1387)
Q Consensus 709 ~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~~~yir~-vt~I~~~wl~~~~~ 782 (1387)
+||.++||++.. ..-|....-+.++||||+|+| ++..|+||+|.|++.|...||.+ +|+|+|+||..+++
T Consensus 949 Ag~~DrVArk~~--~~~y~~~~i~~~~fl~~~svl--~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~ 1019 (1172)
T KOG0926|consen 949 AGFADRVARKVD--ATEYDAAKIQEPVFLHRWSVL--INSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAK 1019 (1172)
T ss_pred HHHHHHHHHhcc--ccccchhhhcCceeeeehhhh--hccCccceehhhhhhcCCcccccceEEEchHHHHhhhh
Confidence 999999998642 223666777789999999999 88999999999999999888775 99999999977654
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.1e-82 Score=807.01 Aligned_cols=591 Identities=31% Similarity=0.438 Sum_probs=490.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
||++.++.+|+.+|.++++++++|+|||||||++|+++++... .+++|+|++|||++|.|++++++++++ ...+..||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~-~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLG-EAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhC-CCcCcEEE
Confidence 7999999999999999999999999999999999999998753 456999999999999999999998874 44567899
Q ss_pred EecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEEeecccCCH
Q 000621 232 CYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATADA 310 (1387)
Q Consensus 232 ~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiIlmSATl~~ 310 (1387)
|..+++...+.+++|+|+|||+|++++..++.++++++|||||||||++++|+.+++++.+.. .++++|+|+||||++.
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~ 158 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDG 158 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence 998988888788999999999999999999999999999999999999999999988877654 6789999999999999
Q ss_pred HHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhH-HHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC
Q 000621 311 HQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYV-SDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA 389 (1387)
Q Consensus 311 ~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~ 389 (1387)
+.+.+||.+++++.++|+.+||+++|.+... .++. ..+...+..++. ...|++|||||++.+++.+++.|.+
T Consensus 159 ~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~------~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~ 231 (819)
T TIGR01970 159 ERLSSLLPDAPVVESEGRSFPVEIRYLPLRG------DQRLEDAVSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAE 231 (819)
T ss_pred HHHHHHcCCCcEEEecCcceeeeeEEeecch------hhhHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999987532 1122 222233444443 3468999999999999999999986
Q ss_pred ---CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 390 ---PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 390 ---~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
.++.+.++||+|++++|.++++.| +|+++||||||+||+|||||+|++|||+|+++...|||.+|++.|.+.|||+
T Consensus 232 ~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 311 (819)
T TIGR01970 232 RLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQ 311 (819)
T ss_pred hcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECH
Confidence 578999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHHH
Q 000621 466 SSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLV 545 (1387)
Q Consensus 466 a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L~ 545 (1387)
++|.||+|||||.++|.||+||+++++..|.+++.|||+|++|++++|.++++|+.++..|+|+|||+.+++..|++.|.
T Consensus 312 asa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~ 391 (819)
T TIGR01970 312 ASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQ 391 (819)
T ss_pred HHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchhhhHHHHhhhhhc
Q 000621 546 QLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFC 625 (1387)
Q Consensus 546 ~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f~ 625 (1387)
.+||||.++ .||++|+.|+.||+||++||||+.|..+||.+++++|||+|+..+ ++ +
T Consensus 392 ~lgald~~~---~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~-~~---~---------------- 448 (819)
T TIGR01970 392 RLGALDAQG---RLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERG-LP---R---------------- 448 (819)
T ss_pred HCCCCCCCC---CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-CC---C----------------
Confidence 999998765 799999999999999999999999999999999999999997543 22 0
Q ss_pred CCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccc-cCccccCCCCCCchhhHHHH
Q 000621 626 HRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAII-IPSYWLWNPHKYTEYDKWLK 704 (1387)
Q Consensus 626 ~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~i~ 704 (1387)
...+|+...+..++.. . ...| ..+.....|+... ++.. ... .. ...+ .+.
T Consensus 449 ~~~~d~~~~~~~~~~~----~---~~~~----------~~~~~~~~~~~~~----~~~~~~~~----~~--~~~~--~~g 499 (819)
T TIGR01970 449 QGGADLMNRLHRLQQG----R---QGRG----------QRAQQLAKKLRRR----LRFSQADS----GA--IASH--ALG 499 (819)
T ss_pred CCcccHHHHHHHHhhc----c---hhhH----------HHHHHHHHHHHHH----hCcCcCCC----cc--cccc--hHh
Confidence 0136877766655421 0 1111 1223334444332 2211 000 00 0011 266
Q ss_pred HHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEeccc---ccceeeeecccChhhHhhhC
Q 000621 705 EIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSV---NNQYLVCVTAFDFDSLSTLC 781 (1387)
Q Consensus 705 ~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t---~~~yir~vt~I~~~wl~~~~ 781 (1387)
.+++.||+++||+.++.. |.+.+.+|+.+.++|.|.| ...+|++..|+..+ ....++.+++|+++|+...+
T Consensus 500 ~lla~a~pdria~~r~~~--~~y~l~~G~~~~l~~~~~l----~~~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~ 573 (819)
T TIGR01970 500 LLLALAFPDRIAKRRGQP--GRYQLANGRGAVLSAEDAL----AREPWLVAADLGEGQGKTAARILLAAPVDEALLRQVL 573 (819)
T ss_pred HHHhhhChHhheeccCCC--CeEECCCCCeeEeCCCCcc----cCCCeEEEEEeeccCCccccceeeeccCCHHHHHHHh
Confidence 789999999999876433 3346779999999999998 34589999999744 34578899999999999888
Q ss_pred CCCccc---ccccc--cccceeeeecccchHHHH
Q 000621 782 PSPLFD---VSMME--RKKLHVRVITGFGSILLK 810 (1387)
Q Consensus 782 ~~~~~~---~~~~~--~~k~~~~~~t~~~~~~l~ 810 (1387)
+ +.+. .-.|. +.++..+..+-+|.+.+.
T Consensus 574 ~-~~~~~~~~~~wd~~~~~v~a~~~~~~g~l~l~ 606 (819)
T TIGR01970 574 P-DLVVQVDQVDWDETKGRLVAERQLRIGQLVLK 606 (819)
T ss_pred H-HHceEEEEEEEecCCCeEEEEEEEEECcEEEe
Confidence 7 3321 11343 234444556666666553
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.8e-82 Score=806.11 Aligned_cols=582 Identities=31% Similarity=0.454 Sum_probs=483.1
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
.||++....+|++++.++++++++|+|||||||++|+++++.... .++|+|++|||++|.|++++++++++ ...+..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~-~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLG-EKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhC-cccCceE
Confidence 499999999999999999999999999999999999999987543 46899999999999999999998874 3456789
Q ss_pred EEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEEeecccCC
Q 000621 231 ICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATAD 309 (1387)
Q Consensus 231 g~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiIlmSATl~ 309 (1387)
||..+++...+.+++|+|+|||+|+++++.++.++++++|||||+|||++++|+.+++++.+.. .++++|+|+||||++
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 9999988888888999999999999999999999999999999999999999999988776654 578999999999999
Q ss_pred HHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHH-HHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhc
Q 000621 310 AHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSD-VVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFD 388 (1387)
Q Consensus 310 ~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~ 388 (1387)
.+.+++||.+++++.++|+.+||+.+|.+... ..+.+. ....+..++. ...|++||||||+.+|+.+++.|.
T Consensus 161 ~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~------~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~ 233 (812)
T PRK11664 161 NDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA------HQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLA 233 (812)
T ss_pred HHHHHHhcCCCCEEEecCccccceEEeccCch------hhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987543 222222 2223434333 347999999999999999999998
Q ss_pred C---CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccC
Q 000621 389 A---PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVS 464 (1387)
Q Consensus 389 ~---~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS 464 (1387)
. .++.+.++||+|++++|.++++.| +|+++||||||+||+|||||+|++|||+|+++...|||.+|++.|.+.|||
T Consensus 234 ~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 313 (812)
T PRK11664 234 SRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRIS 313 (812)
T ss_pred HhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeec
Confidence 6 578899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCccccCCCcHHHHHHHHHHH
Q 000621 465 QSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNL 544 (1387)
Q Consensus 465 ~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~ld~P~~~~l~~al~~L 544 (1387)
+++|.||+|||||.++|.||+||+++++..+++++.|||+|++|++++|.++++|+.++..|+|+|||+..++..|++.|
T Consensus 314 kasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L 393 (812)
T PRK11664 314 QASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLL 393 (812)
T ss_pred hhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchH--HHHHHhHHhcCCCCcccccCCchhhhHHHHhhh
Q 000621 545 VQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGR--EGLVLAAVMANASSIFCRVGSDDEKIKADCLKV 622 (1387)
Q Consensus 545 ~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~--~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~ 622 (1387)
..+||||.++ .||++|+.|+.||++|++|+||+.+..+||.. .++.|||+++.. +. +
T Consensus 394 ~~lgald~~g---~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~-~~----~------------- 452 (812)
T PRK11664 394 QQLGALDGQG---RLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP-PR----S------------- 452 (812)
T ss_pred HHCCCCCCCC---CcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC-CC----C-------------
Confidence 9999998765 79999999999999999999999999998653 556666665431 11 0
Q ss_pred hhcCCCCcHHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccccCCCCCCchhhHH
Q 000621 623 QFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKW 702 (1387)
Q Consensus 623 ~f~~~~gD~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 702 (1387)
..+|+...+..+. ..|+ +.+..+.+|+. +..+ . . ....
T Consensus 453 ----~~~d~~~~l~~~~----------~~~~----------~~~~~~~~~~~----~~~~---~---------~--~~~~ 490 (812)
T PRK11664 453 ----GSSDLGVALSRKQ----------PHWQ----------QRAQQLLKRLN----VRGG---E---------A--DSSL 490 (812)
T ss_pred ----CcccHHHHHHHHH----------HHHH----------HHHHHHHHHHH----hhcc---c---------C--ChHH
Confidence 0245544443221 1232 22333333332 1111 0 0 1134
Q ss_pred HHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCCCCCEEEEEEecccc---cceeeeecccChhhHhh
Q 000621 703 LKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLSVN---NQYLVCVTAFDFDSLST 779 (1387)
Q Consensus 703 i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~~p~wvvy~el~~t~---~~yir~vt~I~~~wl~~ 779 (1387)
+..+|+.||+++||++.+.. +|+.+.+|+.++|||+|+| . ..+|++++|+..++ ...|+.+++|+++||.+
T Consensus 491 ~~~~la~aypdriA~~r~~~--~~~~l~~G~~a~l~~~~~l--~--~~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~ 564 (812)
T PRK11664 491 IAPLLALAFPDRIARRRGQD--GRYQLANGMGAMLDADDAL--S--RHEWLIAPLLLQGSASPDARILLALPLDIDELVQ 564 (812)
T ss_pred HHHHHHHHCHHHHhhhcCCC--CeEEeeCCCeEEECCCCcc--c--CCCeEEEEEhhccCccccceeeEeeccCHHHHHH
Confidence 78899999999999976433 4677889999999999998 3 35899999997653 34577999999999999
Q ss_pred hCCCCccccc--ccc--cccceeeeecccchHHHH
Q 000621 780 LCPSPLFDVS--MME--RKKLHVRVITGFGSILLK 810 (1387)
Q Consensus 780 ~~~~~~~~~~--~~~--~~k~~~~~~t~~~~~~l~ 810 (1387)
++|..+-... .|. +.++..+..+-+|.+++.
T Consensus 565 ~~~~~~~~~~~~~~d~~~~~v~a~~~~~~g~lvl~ 599 (812)
T PRK11664 565 RCPQLVQQSDTVEWDEAKGTLRAWRRLQIGQLTVK 599 (812)
T ss_pred HHHHhceeeeEEEEecCCCeEEEEEEEEECcEEEe
Confidence 9883322111 242 234555666666666554
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=7.3e-55 Score=516.05 Aligned_cols=676 Identities=26% Similarity=0.354 Sum_probs=528.7
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC----CeEEEeccHHHHHHHHH
Q 000621 139 AFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE----QSIVCTQPRKIAAISLA 214 (1387)
Q Consensus 139 ~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~----~~Ilv~~P~r~LA~qla 214 (1387)
...+..+.+.+..+|+...+..|++++..|++++|.++||+|||||+.++|++.-.... ..+.+.+|||+.|+.++
T Consensus 364 d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisia 443 (1282)
T KOG0921|consen 364 DEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLA 443 (1282)
T ss_pred ccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHH
Confidence 34556677788899999999999999999999999999999999999999998744322 36788999999999999
Q ss_pred HHHHHHhcCCCCCccEEEecCCCcccc-CCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH
Q 000621 215 QRVREESRGCYEDDSVICYPSFSSAQH-FDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL 293 (1387)
Q Consensus 215 ~rv~~~~~~~~~~~~vg~~~~~~~~~~-~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~ 293 (1387)
++|+.+.. ...+..+||..++++... +-.-|.+||-|.+++.+.+. +..++++|+||.|||..++||++.+++.+.
T Consensus 444 erva~er~-e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~ 520 (1282)
T KOG0921|consen 444 ERVANERG-EEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMI 520 (1282)
T ss_pred HHHHHhhH-Hhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhh
Confidence 99999864 445678999999988754 34679999999999998665 778899999999999999999999999999
Q ss_pred hcccCccEEeecccCCHHHHHHHhccCCeeeeecccceeEEEEecCCC----------CC----------C---------
Q 000621 294 CRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCAT----------AG----------T--------- 344 (1387)
Q Consensus 294 ~~~~~~kiIlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~----------~~----------~--------- 344 (1387)
...+++++++||||+|.+.|..||..+|...+.|+++|+..+|..+.. +. .
T Consensus 521 ~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n 600 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRN 600 (1282)
T ss_pred ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccc
Confidence 999999999999999999999999999999999999998755443221 00 0
Q ss_pred -ccc--hhhH----------------HHH-HHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC-------CCCceEec
Q 000621 345 -SAV--ASYV----------------SDV-VRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA-------PSAVALPF 397 (1387)
Q Consensus 345 -~~~--~~~~----------------~~~-~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~-------~~~~v~~l 397 (1387)
... ..+. -.+ ...+..+....-+|-|+||+++...+..++..|.. ....++++
T Consensus 601 ~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~ 680 (1282)
T KOG0921|consen 601 MNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL 680 (1282)
T ss_pred cccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc
Confidence 000 0000 001 11222333334578999999999999999988764 34679999
Q ss_pred cCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccC
Q 000621 398 HGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAG 476 (1387)
Q Consensus 398 h~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaG 476 (1387)
|+.++..++.++++.. .|..++|++|++++++|+|.++.+|||.+..+...|-....+....++|.|+.+..||.||+|
T Consensus 681 Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~g 760 (1282)
T KOG0921|consen 681 HSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAG 760 (1282)
T ss_pred hhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCc
Confidence 9999999999999998 699999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCCCeEEEeecccccccCCCCCCcchhccchHHHHHHHHHcCCCCCCCc--cccCCCcHHHHHHHHHHHHHcCceeccC
Q 000621 477 RTEPGRCYRLYSKSDFETRPLNQEPEIHRVHLGIAVLRILALGIRDVQGF--DFIDAPSAKAIEMAIRNLVQLGAIKLNN 554 (1387)
Q Consensus 477 R~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~L~~~~L~l~~lgi~~~~~f--~~ld~P~~~~l~~al~~L~~lgal~~~~ 554 (1387)
|.++|.|+++.+...|+.+.++..||+.|.+|.+..|..|-+-+..+..| ..+.||+.+++..+-..|..++++|.++
T Consensus 761 rvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~ 840 (1282)
T KOG0921|consen 761 RVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDAND 840 (1282)
T ss_pred eecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccC
Confidence 99999999999999999999999999999999999998887766666666 6789999999999999999999999876
Q ss_pred CccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccc-cCC--chhhhHHHHhhhhhcC-CCCc
Q 000621 555 GVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCR-VGS--DDEKIKADCLKVQFCH-RNGD 630 (1387)
Q Consensus 555 ~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~-~~~--~~~~~~~~~~~~~f~~-~~gD 630 (1387)
.+|++|+.++++|++|+++|+++.+.-++|.+-++..|+.|+...+.|.+ ++. .+.+++ .-+..+|+. --+|
T Consensus 841 ---elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~-~~~g~kfsdhva~~ 916 (1282)
T KOG0921|consen 841 ---ELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQR-KFAGNKFSDHVAIV 916 (1282)
T ss_pred ---cccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchh-hccccccccchhhh
Confidence 79999999999999999999999999999999999999888765544421 111 111111 112223331 2355
Q ss_pred HHHHHHHHHHHhcCCcccchhhhhhccCCHHHHHHHHHHHHHHHHHHHHhhccccCccc--cCCCCCCchhhHHHHHHHH
Q 000621 631 LFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKELAIIIPSYW--LWNPHKYTEYDKWLKEIIL 708 (1387)
Q Consensus 631 ~lt~l~~~~~~~~~~~~~~~~wc~~n~l~~~~l~~~~~~r~qL~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~ 708 (1387)
|.+.+..++.|.. ....+.||...+++...|.+....+.||...|+ .++|+..--. .-|.+....+....+.+||
T Consensus 917 ~v~q~~r~~~q~g--a~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~ 993 (1282)
T KOG0921|consen 917 SVIQGYREAVQMG--AAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPEDILFDISVNVNGPDRELNLMRSLLV 993 (1282)
T ss_pred hhhhhhHHHhhhh--hhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccccccceeeccCCCCchhHHHHHHHH
Confidence 6666666677765 345678999999999999999999999998886 5554321100 1122222333345778899
Q ss_pred HhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccccCC-----CCCEEEEEEecccccceeeeecccChhhHhhhCCC
Q 000621 709 SALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQ-----KPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPS 783 (1387)
Q Consensus 709 ~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~~~~-----~p~wvvy~el~~t~~~yir~vt~I~~~wl~~~~~~ 783 (1387)
.++|||+|.+....+ ..+.++...-||-+|++.-|+. ..+|.||.|.+.|...-.+..|.|.|-.|..++.
T Consensus 994 ~~lypn~~~y~ekrk---vLtTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~S- 1069 (1282)
T KOG0921|consen 994 MALYPNVAYYVEKRK---VLTTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGS- 1069 (1282)
T ss_pred hhcCCccceecccee---EEeecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhh-
Confidence 999999998764322 2344566778888887765543 3489999999999877777778888888877776
Q ss_pred CcccccccccccceeeeecccchHHH-HHhhccCCcchHHHHHHHHHhhhhhhhhheecccc
Q 000621 784 PLFDVSMMERKKLHVRVITGFGSILL-KKFCGKSNSNVLSLVSRLRSTFMDERIGIEVNVDQ 844 (1387)
Q Consensus 784 ~~~~~~~~~~~k~~~~~~t~~~~~~l-~~~~~~~~~~~~~li~~lR~~~~d~~i~~~~~~~~ 844 (1387)
. |++. .+-|...+ +|..-.++-+.+--|--||-. |...+-+-+ +|
T Consensus 1070 -----r-----KVqs---dgq~IV~VDdWIklqIshEaAAcItgLr~A-mEaLvvev~--kn 1115 (1282)
T KOG0921|consen 1070 -----R-----KVQS---DGQGIVRVDDWIKLQISHEAAACITGLRPA-MEALVVEVC--KN 1115 (1282)
T ss_pred -----h-----hccc---cCcceEEeeceeeEeccHHHHHHHhhhHHH-HHHHHHHHh--cC
Confidence 2 2221 11111222 355566677777778899988 666655555 55
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4e-53 Score=527.44 Aligned_cols=396 Identities=20% Similarity=0.242 Sum_probs=303.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc-----cc---------CCCeEEEeccHHHHHHHHHHHH
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG-----IA---------AEQSIVCTQPRKIAAISLAQRV 217 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~-----~~---------~~~~Ilv~~P~r~LA~qla~rv 217 (1387)
++..+|+ +++..+..+++++++|+||||||+|+||++++.. +. ..++|+|++|||+||.|++.++
T Consensus 164 ~~~~iQ~-qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 164 LQPDVQL-KIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred hhHHHHH-HHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHH
Confidence 4445555 4555566677777799999999999999997631 11 2458999999999999999999
Q ss_pred HHHhcCCC-CCccEEE-ecCC-C---ccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHH
Q 000621 218 REESRGCY-EDDSVIC-YPSF-S---SAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKD 291 (1387)
Q Consensus 218 ~~~~~~~~-~~~~vg~-~~~~-~---~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~ 291 (1387)
.+..+... .+..+.. +... + .......+|+++|++.. .+.++++++|||||||||+..+|+++.+++.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~ 316 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARK 316 (675)
T ss_pred HHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHH
Confidence 88653211 1111111 1111 1 11123468999998742 2468899999999999999999999988876
Q ss_pred HHhcccCccEEeecccCC--HHHHHHHhccCCeeeeeccc-ceeEEEEecCCCCCCccchhhHHHHHHHHHHhhh---cc
Q 000621 292 LLCRRFDLRLVIMSATAD--AHQLSKYFYDCGISHVVGRN-FPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHT---TE 365 (1387)
Q Consensus 292 l~~~~~~~kiIlmSATl~--~~~~~~~f~~~~v~~i~gr~-~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~---~~ 365 (1387)
+... ..|+++||||++ .+.+.+||.+++.+.++|++ +|++.+|.+...... ....+.......+..++. ..
T Consensus 317 ~~~~--~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~-~~~~y~~~~k~~~l~~L~~~~~~ 393 (675)
T PHA02653 317 HIDK--IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPK-NKRAYIEEEKKNIVTALKKYTPP 393 (675)
T ss_pred hhhh--cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccc-cchhhhHHHHHHHHHHHHHhhcc
Confidence 5432 248999999995 55788999989999999985 999999986542111 111122221111222221 13
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCC--CCceEeccCCCCHhhhhhhhccC--CCceEEEEecchhhcCCCCCCceEEEec
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDAP--SAVALPFHGQLSFDEQFCVFKSY--PGRRKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~~~--~~~v~~lh~~l~~~er~~v~~~f--~g~~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
.++++||||||+.+++.+++.|.+. ++.+.++||+|++.+ ++++.| +|+++||||||+||||||||+|++|||+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 4679999999999999999999875 789999999999864 444554 6899999999999999999999999999
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCCCCCcchhccc---hHHHHHHHHHc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQEPEIHRVH---LGIAVLRILAL 518 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~pEi~r~~---L~~~~L~l~~l 518 (1387)
|+++.+ +|.+++ ..|+|+++|.||+|||||.++|.||+||+++++ .| |.+.+ |..++|++++|
T Consensus 472 G~~k~p--~~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~ 537 (675)
T PHA02653 472 GRVYVP--EPFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYF 537 (675)
T ss_pred CCccCC--CcccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHc
Confidence 987754 244444 469999999999999999999999999999874 34 67766 88999999999
Q ss_pred CCCCCCCccccCCCcHHHHHHHHHHHHHcCceeccCCccccCHH--HHHhhhcCCChhhHHHHHHHh
Q 000621 519 GIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEE--GKFLVKLGIEPRLGKLILSCF 583 (1387)
Q Consensus 519 gi~~~~~f~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~l--G~~~~~lpl~p~~~k~ll~~~ 583 (1387)
|++.+ .+.|+|||+.+++.+|++.|..+||+++ .||.+ |++|+.+ ++||++++|.
T Consensus 538 g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~-----~l~~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 538 NLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE-----KWYEILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred CCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch-----hhhhhhccccHHHH----HHhHHHhccc
Confidence 99655 4569999999999999999999998853 69999 9999999 9999998865
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-47 Score=418.10 Aligned_cols=336 Identities=19% Similarity=0.275 Sum_probs=271.3
Q ss_pred CccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC--
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE-- 197 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-- 197 (1387)
.....+|.+|| +++.++++++..++..|+.+|+++|+.++.+++++.+ |+||||||.++..++++..+...
T Consensus 57 ~e~~~sf~dLg------v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIgl-AeTGSGKT~afaLPIl~~LL~~p~~ 129 (476)
T KOG0330|consen 57 DESFKSFADLG------VHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGL-AETGSGKTGAFALPILQRLLQEPKL 129 (476)
T ss_pred hhhhcchhhcC------cCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEE-eccCCCchhhhHHHHHHHHHcCCCC
Confidence 44567889888 9999999999999999999999999999999988885 89999999997777777655433
Q ss_pred CeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCC------CccccCCCcEEEEChhHHHHHhhcCC--CCCceeE
Q 000621 198 QSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSF------SSAQHFDSKVIYMTDHCLLQHFMNDR--DLSRISC 269 (1387)
Q Consensus 198 ~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~------~~~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~ 269 (1387)
..++|+.|||+||.|+++.+..+..+... .+....++ .....++++|+|+|||+|.+++.+.. .+.++++
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~igl--r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGL--RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKF 207 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCe--EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHH
Confidence 47899999999999999999988644332 22222222 22345789999999999999998655 8899999
Q ss_pred EEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeecccc----eeEEEEecCCCCC
Q 000621 270 IIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNF----PVDVRYVPCATAG 343 (1387)
Q Consensus 270 IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~----pv~~~~~~~~~~~ 343 (1387)
+|+|||| |.++.||...+-+++...+++.|++++|||++.. .++.--...|+-......| .+..+|+..+.
T Consensus 208 LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-- 284 (476)
T KOG0330|consen 208 LVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-- 284 (476)
T ss_pred HhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc--
Confidence 9999999 9999999999999998899999999999999743 3443222223222111111 12223332221
Q ss_pred CccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEe
Q 000621 344 TSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFA 422 (1387)
Q Consensus 344 ~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVa 422 (1387)
..+...+.++++...++++||||++...+++++-.|+..|+.+.++||.|++..|.-.++.| +|.+.||||
T Consensus 285 --------k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~ 356 (476)
T KOG0330|consen 285 --------KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVC 356 (476)
T ss_pred --------cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEe
Confidence 11223344555556779999999999999999999999999999999999999999999999 899999999
Q ss_pred cchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 423 TNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 423 T~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
||+|+||+|||.|++||||++|... .+|+||+||+||.| +|+++.|++..|.+
T Consensus 357 TDVaSRGLDip~Vd~VVNyDiP~~s------------------kDYIHRvGRtaRaGrsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 357 TDVASRGLDIPHVDVVVNYDIPTHS------------------KDYIHRVGRTARAGRSGKAITLVTQYDVE 410 (476)
T ss_pred cchhcccCCCCCceEEEecCCCCcH------------------HHHHHHcccccccCCCcceEEEEehhhhH
Confidence 9999999999999999999998765 89999999999999 99999999986543
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-44 Score=422.25 Aligned_cols=329 Identities=20% Similarity=0.280 Sum_probs=261.3
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc--------ccCCCeEEEeccHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG--------IAAEQSIVCTQPRKI 208 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~--------~~~~~~Ilv~~P~r~ 208 (1387)
+.+.+...++..++..|+++|.+.++.++.+.+++.+ |.||||||+++...+..+. ...+..+||++|||+
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~i-A~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGI-ARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEE-eccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 8889999999999999999999999999999998885 8999999998444443321 223558999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccEEEecCC-----CccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccch
Q 000621 209 AAISLAQRVREESRGCYEDDSVICYPSF-----SSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNT 282 (1387)
Q Consensus 209 LA~qla~rv~~~~~~~~~~~~vg~~~~~-----~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~ 282 (1387)
||.|+.+.+.++...+... .+..+.+. ......+.+|+|+|||+|++++.... .|++++++|+|||| ||+++
T Consensus 177 LA~QV~~~~~~~~~~~~~~-~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldm 254 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLR-STCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDM 254 (519)
T ss_pred HHHHHHHHHHHHcCCCCcc-EEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhcc
Confidence 9999999999987555432 22223322 22234578999999999999998776 89999999999999 99999
Q ss_pred hHHHHHHHHHHhc-ccCccEEeecccCCHH--HHHHHhccCCeeeeecccc------eeEEEEecCCCCCCccchhhHHH
Q 000621 283 DLLLALVKDLLCR-RFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNF------PVDVRYVPCATAGTSAVASYVSD 353 (1387)
Q Consensus 283 d~l~~~lk~l~~~-~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~------pv~~~~~~~~~~~~~~~~~~~~~ 353 (1387)
+|...+.+++... +++.|++++|||.+.. .+++-|.+.++....|... .+....... ........
T Consensus 255 GFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~------~~~~K~~~ 328 (519)
T KOG0331|consen 255 GFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVC------DETAKLRK 328 (519)
T ss_pred ccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhc------CHHHHHHH
Confidence 9999999999998 6677899999998754 4665554444433333211 011000000 00111122
Q ss_pred HHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCC
Q 000621 354 VVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTI 432 (1387)
Q Consensus 354 ~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdI 432 (1387)
+...+..+. ...++++||||+++..|++++..|+..++.+..+||+.++.+|..+++.| +|+..||||||+|+|||||
T Consensus 329 l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi 407 (519)
T KOG0331|consen 329 LGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV 407 (519)
T ss_pred HHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC
Confidence 223333333 46789999999999999999999999899999999999999999999999 9999999999999999999
Q ss_pred CCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 433 PGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 433 p~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
|+|++||+|++|.+. ++|+||+||+||.| .|.+|.|++..++.
T Consensus 408 ~dV~lVInydfP~~v------------------EdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 408 PDVDLVINYDFPNNV------------------EDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ccccEEEeCCCCCCH------------------HHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 999999999998866 99999999999987 99999999998764
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-42 Score=390.59 Aligned_cols=324 Identities=19% Similarity=0.252 Sum_probs=262.1
Q ss_pred cccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccC-----CCeEEEeccHHHHH
Q 000621 136 RIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAA-----EQSIVCTQPRKIAA 210 (1387)
Q Consensus 136 ~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~-----~~~Ilv~~P~r~LA 210 (1387)
+|+..+++++..+|+..|+++|...|+-++.+.+++. ||.||||||.++..++++..+.. ..+|||++|||+||
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca-~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICA-CAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELA 265 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhh-eecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHH
Confidence 3899999999999999999999999999999998887 89999999999888888864332 34899999999999
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecCCCcc------ccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCccccccch
Q 000621 211 ISLAQRVREESRGCYEDDSVICYPSFSSA------QHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAHERSLNT 282 (1387)
Q Consensus 211 ~qla~rv~~~~~~~~~~~~vg~~~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaHer~~~~ 282 (1387)
+|++....++...+.. .+|...++.+. ....++|+|+|||+|.+++.+.+ .+.++.++|+|||| |+++.
T Consensus 266 iQv~sV~~qlaqFt~I--~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLee 342 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDI--TVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEE 342 (691)
T ss_pred HHHHHHHHHHHhhccc--eeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHH
Confidence 9999888877644332 34443333222 33579999999999999999988 78999999999999 99999
Q ss_pred hHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhH-------HH
Q 000621 283 DLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYV-------SD 353 (1387)
Q Consensus 283 d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~-------~~ 353 (1387)
.|...+-.++...+.+.|.++||||++.+ .+...-.+ .||.++..+...........++ .+
T Consensus 343 gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~----------kPvrifvd~~~~~a~~LtQEFiRIR~~re~d 412 (691)
T KOG0338|consen 343 GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLN----------KPVRIFVDPNKDTAPKLTQEFIRIRPKREGD 412 (691)
T ss_pred HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcC----------CCeEEEeCCccccchhhhHHHheeccccccc
Confidence 99999988888888999999999999754 35554433 3455544443321111111111 01
Q ss_pred HHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCC
Q 000621 354 VVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTI 432 (1387)
Q Consensus 354 ~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdI 432 (1387)
.-.++..++...-...++||+.|++.+.++.-.|.-.|+.+.-+||+|++++|...++.| .+++.|||||++|+||+||
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 112223333334468899999999999999988888899999999999999999999999 8999999999999999999
Q ss_pred CCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 433 PGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 433 p~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
++|..||||.+|+.. ..|+||+||+.|.| .|.++.|..+++
T Consensus 493 ~gV~tVINy~mP~t~------------------e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTI------------------EHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred cceeEEEeccCchhH------------------HHHHHHhhhhhhcccCcceEEEecccc
Confidence 999999999987754 88999999999998 999999999874
No 17
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-41 Score=417.20 Aligned_cols=332 Identities=21% Similarity=0.289 Sum_probs=269.9
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCC-e-
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQ-S- 199 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~-~- 199 (1387)
..|++++ +.+.+++++.+.++..|+++|+.+|+.++.++++++ .|+||||||.++...+++... .... .
T Consensus 29 ~~F~~l~------l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~-~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~ 101 (513)
T COG0513 29 PEFASLG------LSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLG-QAQTGTGKTAAFLLPLLQKILKSVERKYVS 101 (513)
T ss_pred CCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEE-ECCCCChHHHHHHHHHHHHHhcccccCCCc
Confidence 5687777 889999999999999999999999999999977666 799999999998777777633 2222 2
Q ss_pred EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC-----ccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEc
Q 000621 200 IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS-----SAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVD 273 (1387)
Q Consensus 200 Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~-----~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIID 273 (1387)
++|++|||+||.|+++.+..+.........+..+.+.. .....+++|+|+|||+|++++.... .++++.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 89999999999999999999875542111122222211 1122359999999999999998875 89999999999
Q ss_pred CccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCe-eeeec-----ccceeEEEEecCCCCCCc
Q 000621 274 EAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGI-SHVVG-----RNFPVDVRYVPCATAGTS 345 (1387)
Q Consensus 274 EaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v-~~i~g-----r~~pv~~~~~~~~~~~~~ 345 (1387)
||| |+++.+|..++.+++...+++.|++++|||++.. .++.-+...|+ +.+.. ....+..+|.....
T Consensus 182 EAD-rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~---- 256 (513)
T COG0513 182 EAD-RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES---- 256 (513)
T ss_pred cHh-hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC----
Confidence 999 9999999999999999998899999999999863 23333333333 33321 12334444444322
Q ss_pred cchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecc
Q 000621 346 AVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATN 424 (1387)
Q Consensus 346 ~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ 424 (1387)
.+.+...+..++.....+++||||+++..++.++..|...|+.+..+||+|++++|.++++.| +|+.+||||||
T Consensus 257 -----~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 257 -----EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred -----HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 124777888888777778999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccc
Q 000621 425 VAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 425 iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~ 490 (1387)
+|+||||||+|.+||||++|... ++|+||+||+||.| .|.++.|+++.
T Consensus 332 vaaRGiDi~~v~~VinyD~p~~~------------------e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 332 VAARGLDIPDVSHVINYDLPLDP------------------EDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred hhhccCCccccceeEEccCCCCH------------------HHheeccCccccCCCCCeEEEEeCcH
Confidence 99999999999999999998755 89999999999998 99999999874
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.4e-41 Score=383.79 Aligned_cols=338 Identities=17% Similarity=0.221 Sum_probs=269.5
Q ss_pred ccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc--c--
Q 000621 118 DANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS--G-- 193 (1387)
Q Consensus 118 ~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~--~-- 193 (1387)
.-+-++.+|++.+ ++..+++.+...++..|+++|+.+|+-.++..+++. .|+||||||.+++..|+.. .
T Consensus 239 ~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~ig-vaETgsGktaaf~ipLl~~IsslP 311 (673)
T KOG0333|consen 239 RLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIG-VAETGSGKTAAFLIPLLIWISSLP 311 (673)
T ss_pred CCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccchhccCCeee-EEeccCCccccchhhHHHHHHcCC
Confidence 3455677888777 888999999999999999999999998887777777 5899999998855555432 1
Q ss_pred -------ccCCCeEEEeccHHHHHHHHHHHHHHHhcCC--CCCccEEEecCCCc--cccCCCcEEEEChhHHHHHhhcCC
Q 000621 194 -------IAAEQSIVCTQPRKIAAISLAQRVREESRGC--YEDDSVICYPSFSS--AQHFDSKVIYMTDHCLLQHFMNDR 262 (1387)
Q Consensus 194 -------~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~--~~~~~vg~~~~~~~--~~~~~~~Ivv~Tpg~Ll~~l~~~~ 262 (1387)
...++..+++.|||+||.|+.+.-.++.... .....||+....+. ..+.+++|+++|||+|++.|.+..
T Consensus 312 ~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 312 PMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred CcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH
Confidence 1225678999999999999998887775322 22222333333333 356789999999999999987665
Q ss_pred -CCCceeEEEEcCccccccchhHHHHHHHHHHhccc-----------------------C--ccEEeecccCCH--HHHH
Q 000621 263 -DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRF-----------------------D--LRLVIMSATADA--HQLS 314 (1387)
Q Consensus 263 -~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~-----------------------~--~kiIlmSATl~~--~~~~ 314 (1387)
.++++.+||+|||+ |++|++|...+.+++..++. . .+.+.||||+++ +.++
T Consensus 392 lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verla 470 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLA 470 (673)
T ss_pred HHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHH
Confidence 78999999999999 99999999999998876541 1 689999999875 3444
Q ss_pred -HHhccCCeeeee--cccce-eEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCC
Q 000621 315 -KYFYDCGISHVV--GRNFP-VDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAP 390 (1387)
Q Consensus 315 -~~f~~~~v~~i~--gr~~p-v~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~ 390 (1387)
.||..+-++.+. |+..| ++..+.... .+.....+..++.+....++|||+|+++.|+.+|+.|.+.
T Consensus 471 r~ylr~pv~vtig~~gk~~~rveQ~v~m~~----------ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 471 RSYLRRPVVVTIGSAGKPTPRVEQKVEMVS----------EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred HHHhhCCeEEEeccCCCCccchheEEEEec----------chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc
Confidence 666554444443 33322 222222111 1334667777777777899999999999999999999999
Q ss_pred CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHH
Q 000621 391 SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSAN 469 (1387)
Q Consensus 391 ~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~ 469 (1387)
++.+..|||+-++++|+.+++.| .|...|+||||+|++|||||||.+|||+++++.. .+|.
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksi------------------eDYt 602 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSI------------------EDYT 602 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhH------------------HHHH
Confidence 99999999999999999999999 8899999999999999999999999999998855 8999
Q ss_pred HHhcccCCCC-CCeEEEeecccc
Q 000621 470 QRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 470 QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
||+||+||.| .|.++.||++++
T Consensus 603 HRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 603 HRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHhccccccccCceeEEEeccch
Confidence 9999999999 999999999987
No 19
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-40 Score=423.50 Aligned_cols=436 Identities=20% Similarity=0.191 Sum_probs=310.0
Q ss_pred cccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEecc
Q 000621 126 FEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQP 205 (1387)
Q Consensus 126 f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P 205 (1387)
|++++ +++.+++.+.+.++..|.+.|.+++...+..+++++++||||||||+++...++... ..++++++++|
T Consensus 3 ~~~l~------lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P 75 (737)
T PRK02362 3 IAELP------LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVP 75 (737)
T ss_pred hhhcC------CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeC
Confidence 55555 778899999999999999999999988777788888899999999999777766653 34678999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc---ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccc
Q 000621 206 RKIAAISLAQRVREESRGCYEDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLN 281 (1387)
Q Consensus 206 ~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~ 281 (1387)
+|+||.|.++.+.+.. .. +..++...+.... .....+|+|+||+++...+.+.. .+.++++|||||+| ...+
T Consensus 76 ~raLa~q~~~~~~~~~-~~--g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d 151 (737)
T PRK02362 76 LRALASEKFEEFERFE-EL--GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDS 151 (737)
T ss_pred hHHHHHHHHHHHHHhh-cC--CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCC
Confidence 9999999999998653 11 2234333222111 12357999999999988776544 68899999999999 5555
Q ss_pred hhH---HHHHHHHHHhcccCccEEeecccC-CHHHHHHHhccCCeeeeecccceeEEEE--ecCCC--CCCccch-hhHH
Q 000621 282 TDL---LLALVKDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRY--VPCAT--AGTSAVA-SYVS 352 (1387)
Q Consensus 282 ~d~---l~~~lk~l~~~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~--~~~~~--~~~~~~~-~~~~ 352 (1387)
.++ +..++..+....++.|+|+||||+ +.+.+++|+... .+....+..|+.... ..... ....... ....
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~ 230 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKD 230 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccch
Confidence 443 333445555566789999999997 678899998532 222222323332211 11000 0000000 0112
Q ss_pred HHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCC------------------------------------CCceEe
Q 000621 353 DVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAP------------------------------------SAVALP 396 (1387)
Q Consensus 353 ~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~------------------------------------~~~v~~ 396 (1387)
.....+...+ ..++++||||+++.+++.++..|... ...+..
T Consensus 231 ~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 231 DTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred HHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 3333443333 36789999999999999988777531 135889
Q ss_pred ccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhccc
Q 000621 397 FHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRA 475 (1387)
Q Consensus 397 lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRa 475 (1387)
+||+|++++|..+++.| +|.++|||||+++++|||+|++++||+. ..+||+..|. .|+|..+|.||+|||
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRA 379 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcC
Confidence 99999999999999999 9999999999999999999999999974 2357664433 578999999999999
Q ss_pred CCCC---CCeEEEeecccc-----cccCCCCCCcchhc------cchHHHHHHHHHcCC----CCCCCc---cccCCC--
Q 000621 476 GRTE---PGRCYRLYSKSD-----FETRPLNQEPEIHR------VHLGIAVLRILALGI----RDVQGF---DFIDAP-- 532 (1387)
Q Consensus 476 GR~~---~G~~~~L~s~~~-----~~~~~~~~~pEi~r------~~L~~~~L~l~~lgi----~~~~~f---~~ld~P-- 532 (1387)
||.| .|.|+.+....+ +..+... .|+-.. ..|...++...+.|. .++..| .|+..+
T Consensus 380 GR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~ 458 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD 458 (737)
T ss_pred CCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc
Confidence 9987 499999987642 1222111 111111 135566676666663 122222 333222
Q ss_pred ----cHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhh
Q 000621 533 ----SAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR 585 (1387)
Q Consensus 533 ----~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~ 585 (1387)
-.+.+..+++.|.+.|+|+.+++.+.+|++|+.++.++++|..+..+..++..
T Consensus 459 ~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 459 DTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred chHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 33568899999999999998777788999999999999999999999888764
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=415.17 Aligned_cols=340 Identities=18% Similarity=0.264 Sum_probs=258.2
Q ss_pred ccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc----
Q 000621 118 DANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG---- 193 (1387)
Q Consensus 118 ~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~---- 193 (1387)
+.+.+..+|++++ +.+.+++.+.+.++..|+++|+++++.++.++++++ +||||||||+++..+++...
T Consensus 124 ~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~-~ApTGSGKTlaylLP~l~~i~~~~ 196 (545)
T PTZ00110 124 NVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIG-IAETGSGKTLAFLLPAIVHINAQP 196 (545)
T ss_pred CCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEE-EeCCCChHHHHHHHHHHHHHHhcc
Confidence 3455677888776 778899999999999999999999999998877765 69999999998554443321
Q ss_pred ---ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-----cccCCCcEEEEChhHHHHHhhcCC-CC
Q 000621 194 ---IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCLLQHFMNDR-DL 264 (1387)
Q Consensus 194 ---~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l 264 (1387)
...+..+||++|||+||.|+.+.+..+....... ....+..... .....++|+|+|||+|++.+.... .+
T Consensus 197 ~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~-~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 197 LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR-NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc-EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCCh
Confidence 1224579999999999999999998876433222 1222222111 122468999999999999997665 78
Q ss_pred CceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhc-cCCeeeeeccc-----ceeEEEE
Q 000621 265 SRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFY-DCGISHVVGRN-----FPVDVRY 336 (1387)
Q Consensus 265 ~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~-~~~v~~i~gr~-----~pv~~~~ 336 (1387)
.++++||||||| ++++.+|...+.+.+...+++.|++++|||++.+ .+.+.+. ..++....+.. ..+...+
T Consensus 276 ~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~ 354 (545)
T PTZ00110 276 RRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEV 354 (545)
T ss_pred hhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEE
Confidence 999999999999 8999999988888888888999999999998754 3444443 23332222211 1111111
Q ss_pred ecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CC
Q 000621 337 VPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PG 415 (1387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g 415 (1387)
..... ......+...+..+. ...+++||||++++.++.++..|...++.+..+||++++++|..+++.| +|
T Consensus 355 ~~~~~------~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 355 FVVEE------HEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred EEEec------hhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC
Confidence 11100 111122222222222 2578999999999999999999999999999999999999999999999 89
Q ss_pred ceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 416 RRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 416 ~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
+.+|||||+++++|||+|+|++||++++|... ++|+||+|||||.| .|.||.|+++++.
T Consensus 427 ~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~------------------~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 427 KSPIMIATDVASRGLDVKDVKYVINFDFPNQI------------------EDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred CCcEEEEcchhhcCCCcccCCEEEEeCCCCCH------------------HHHHHHhcccccCCCCceEEEEECcchH
Confidence 99999999999999999999999999987644 89999999999998 9999999998754
No 21
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-39 Score=415.98 Aligned_cols=426 Identities=17% Similarity=0.175 Sum_probs=296.0
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
+.+.+++.+.+.++. +.+.|++++.. +.++++++++||||||||+++..++++... .++++++++|+|+||.|.++.
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~-l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQ-LRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHH-HhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEechHHHHHHHHHH
Confidence 778888888887776 67777776665 567777888999999999998877776532 356889999999999999999
Q ss_pred HHHHhcCCCCCccEEEecCCCcc---ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchh---HHHHHH
Q 000621 217 VREESRGCYEDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTD---LLLALV 289 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d---~l~~~l 289 (1387)
+.+.. . .+..++...+.... ....++|+|+|||++...+.+.+ .+.++++||||||| +..+.+ .+..++
T Consensus 85 ~~~l~-~--~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH-~l~d~~rg~~le~ll 160 (674)
T PRK01172 85 LSRLR-S--LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIH-IIGDEDRGPTLETVL 160 (674)
T ss_pred HHHHh-h--cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecch-hccCCCccHHHHHHH
Confidence 98743 1 12334443322111 12467999999999988877666 58999999999999 444332 334445
Q ss_pred HHHHhcccCccEEeecccC-CHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCC
Q 000621 290 KDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEG 368 (1387)
Q Consensus 290 k~l~~~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g 368 (1387)
..+...+++.|+|+||||+ +...+++|++ ++.+....+..|+.........................+.+.. ..++
T Consensus 161 ~~~~~~~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~ 237 (674)
T PRK01172 161 SSARYVNPDARILALSATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETV--NDGG 237 (674)
T ss_pred HHHHhcCcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHH--hCCC
Confidence 5555567789999999998 6788999985 4455555566666543221110000000000011222222222 4578
Q ss_pred cEEEEeCCHHHHHHHHHHhcCC-------------------------CCceEeccCCCCHhhhhhhhccC-CCceEEEEe
Q 000621 369 TILAFLTSKMEVEWACEKFDAP-------------------------SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFA 422 (1387)
Q Consensus 369 ~iLVF~~s~~eie~l~~~L~~~-------------------------~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVa 422 (1387)
++||||+++++++.++..|... ...+..+||+|++++|..+++.| +|.++||||
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 9999999999999999887531 12478899999999999999999 899999999
Q ss_pred cchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeecc-cccc---c-
Q 000621 423 TNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSK-SDFE---T- 494 (1387)
Q Consensus 423 T~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~-~~~~---~- 494 (1387)
|+++++|+|+|+..+||+ +.+ .|+. ....|+|..+|.||+|||||.| .|.++.+... ++++ .
T Consensus 318 T~~la~Gvnipa~~VII~-~~~---~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~ 387 (674)
T PRK01172 318 TPTLAAGVNLPARLVIVR-DIT---RYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKY 387 (674)
T ss_pred cchhhccCCCcceEEEEc-Cce---EeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHH
Confidence 999999999999877774 332 2321 2235789999999999999987 6777776543 2232 2
Q ss_pred CCCCCCc--------chhccchHHHHHHHHHcCC----CCCCCc---ccc--CCCc---HHHHHHHHHHHHHcCceeccC
Q 000621 495 RPLNQEP--------EIHRVHLGIAVLRILALGI----RDVQGF---DFI--DAPS---AKAIEMAIRNLVQLGAIKLNN 554 (1387)
Q Consensus 495 ~~~~~~p--------Ei~r~~L~~~~L~l~~lgi----~~~~~f---~~l--d~P~---~~~l~~al~~L~~lgal~~~~ 554 (1387)
+...+.| ++.+.+ +|...+.|. .++..| .|+ ++++ .+.++.|++.|.+.|+|+.+
T Consensus 388 l~~~~~pi~S~l~~~~~~~~~----~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~- 462 (674)
T PRK01172 388 LSGEPEPVISYMGSQRKVRFN----TLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGD- 462 (674)
T ss_pred HcCCCCceeecCCCcccHHHH----HHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccC-
Confidence 2222222 222222 344445543 344444 333 4332 56789999999999999854
Q ss_pred CccccCHHHHHhhhcCCChhhHHHHHHHhhhcc
Q 000621 555 GVFELTEEGKFLVKLGIEPRLGKLILSCFRRRL 587 (1387)
Q Consensus 555 ~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c 587 (1387)
+.+.+|++|+.++.+|++|..++.+..++....
T Consensus 463 ~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 495 (674)
T PRK01172 463 VTLRATRLGKLTSDLYIDPESALILKSAFDHDY 495 (674)
T ss_pred CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccC
Confidence 357899999999999999999999998886543
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.2e-40 Score=405.68 Aligned_cols=332 Identities=18% Similarity=0.220 Sum_probs=261.0
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--CCCeEE
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA--AEQSIV 201 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~Il 201 (1387)
.+|++++ +.+.+++.+.++++..|++.|+++++.++.+++ ++++||||||||+++..++++.... ...+++
T Consensus 4 ~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~d-vi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~l 76 (460)
T PRK11776 4 TAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAILAGKD-VIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQAL 76 (460)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEECCCCCcHHHHHHHHHHHHhhhccCCceEE
Confidence 4677776 888999999999999999999999999887765 5558999999999977777665322 134789
Q ss_pred EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcC
Q 000621 202 CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDE 274 (1387)
Q Consensus 202 v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDE 274 (1387)
+++|||+||.|+++.+........ +..+....+... ....+++|+|+|||+|.+++.... .+.++++||+||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~-~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIP-NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999887653221 112222111111 123568999999999999987655 789999999999
Q ss_pred ccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCe-eeeecc--cceeEEEEecCCCCCCccchh
Q 000621 275 AHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGI-SHVVGR--NFPVDVRYVPCATAGTSAVAS 349 (1387)
Q Consensus 275 aHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v-~~i~gr--~~pv~~~~~~~~~~~~~~~~~ 349 (1387)
|| ++++.+|...+...+...+++.|++++|||++.. .+...+...+. +.+... ...+..+|.....
T Consensus 156 ad-~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-------- 226 (460)
T PRK11776 156 AD-RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSP-------- 226 (460)
T ss_pred HH-HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCc--------
Confidence 99 8888888888877777788889999999999654 45555444333 222221 1223344433221
Q ss_pred hHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhc
Q 000621 350 YVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAET 428 (1387)
Q Consensus 350 ~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~ 428 (1387)
......+..++....++++||||+++.+++.+++.|...++.+..+||+|++.+|..+++.| +|+.+|||||+++++
T Consensus 227 --~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 227 --DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred --HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 22445555566666778999999999999999999999999999999999999999999999 899999999999999
Q ss_pred CCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 429 SLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 429 GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
|||+|+|++||++++|... .+|+||+|||||.| .|.||.|+++++.
T Consensus 305 GiDi~~v~~VI~~d~p~~~------------------~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 305 GLDIKALEAVINYELARDP------------------EVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ccchhcCCeEEEecCCCCH------------------hHhhhhcccccCCCCcceEEEEEchhHH
Confidence 9999999999999997644 88999999999998 9999999998754
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.5e-40 Score=399.75 Aligned_cols=332 Identities=14% Similarity=0.156 Sum_probs=253.4
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--------
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI-------- 194 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~-------- 194 (1387)
..+|++++ +++.+++++.+.++..|++.|+++|+.++.++++++ +||||||||+++..++++...
T Consensus 7 ~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~-~ApTGsGKTla~llp~l~~l~~~~~~~~~ 79 (423)
T PRK04837 7 EQKFSDFA------LHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAG-QAQTGTGKTMAFLTATFHYLLSHPAPEDR 79 (423)
T ss_pred CCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEE-ECCCCchHHHHHHHHHHHHHHhccccccc
Confidence 35677777 889999999999999999999999999887766555 799999999987666654321
Q ss_pred -cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC-CCCc
Q 000621 195 -AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR-DLSR 266 (1387)
Q Consensus 195 -~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~ 266 (1387)
..+.+++|++|||+||.|+++.+........ ..++...+... ....+++|+|+|||+|++++.... .+++
T Consensus 80 ~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 80 KVNQPRALIMAPTRELAVQIHADAEPLAQATG--LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred ccCCceEEEECCcHHHHHHHHHHHHHHhccCC--ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 1235799999999999999998887764332 23333222221 122457999999999999986654 7899
Q ss_pred eeEEEEcCccccccchhHHHHHHHHHHhcc--cCccEEeecccCCHHH--HH-HHhccCCeeeeeccc---ceeEEEEec
Q 000621 267 ISCIIVDEAHERSLNTDLLLALVKDLLCRR--FDLRLVIMSATADAHQ--LS-KYFYDCGISHVVGRN---FPVDVRYVP 338 (1387)
Q Consensus 267 l~~IIIDEaHer~~~~d~l~~~lk~l~~~~--~~~kiIlmSATl~~~~--~~-~~f~~~~v~~i~gr~---~pv~~~~~~ 338 (1387)
+++||||||| ++++.+|...+...+...+ ...+.+++|||++... +. .++.+...+.+.... ..+...+..
T Consensus 158 v~~lViDEad-~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~ 236 (423)
T PRK04837 158 IQVVVLDEAD-RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFY 236 (423)
T ss_pred ccEEEEecHH-HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEe
Confidence 9999999999 7888888777655554443 2456789999997543 22 333332222222111 111111111
Q ss_pred CCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCce
Q 000621 339 CATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRR 417 (1387)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~ 417 (1387)
.........+..+......+++||||+++..++.+++.|...++.+..+||+|++++|..+++.| +|+.
T Consensus 237 ----------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~ 306 (423)
T PRK04837 237 ----------PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDL 306 (423)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCC
Confidence 11233445555566556678999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 418 KVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 418 kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
+|||||+++++|||+|+|++||++++|... ++|+||+|||||.| .|.|+.|+++++.
T Consensus 307 ~vLVaTdv~~rGiDip~v~~VI~~d~P~s~------------------~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 307 DILVATDVAARGLHIPAVTHVFNYDLPDDC------------------EDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred cEEEEechhhcCCCccccCEEEEeCCCCch------------------hheEeccccccCCCCCeeEEEEeCHHHH
Confidence 999999999999999999999999987643 88999999999998 9999999998754
No 24
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-40 Score=347.82 Aligned_cols=339 Identities=16% Similarity=0.209 Sum_probs=268.9
Q ss_pred CccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc--cccCC
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS--GIAAE 197 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~--~~~~~ 197 (1387)
-....+|+++| +.+++++++.+.|+..|..+|+.+|+.++++++++. +|..|+|||..+..-++.. .....
T Consensus 23 ~~v~~~F~~Mg------l~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdVia-QaqSGTGKTa~~si~vlq~~d~~~r~ 95 (400)
T KOG0328|consen 23 VKVIPTFDDMG------LKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIA-QAQSGTGKTATFSISVLQSLDISVRE 95 (400)
T ss_pred cccccchhhcC------chHHHHHHHHHhccCCchHHHhhhhhhhhcccceEE-EecCCCCceEEEEeeeeeecccccce
Confidence 34567899999 999999999999999999999999999999988877 8999999997532222221 11224
Q ss_pred CeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc--EEEecCCC--ccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEE
Q 000621 198 QSIVCTQPRKIAAISLAQRVREESRGCYEDDS--VICYPSFS--SAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIV 272 (1387)
Q Consensus 198 ~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~--vg~~~~~~--~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~III 272 (1387)
.+++|+.|||+||.|+.+.+..+.....+... +|+..-.+ .+...+.+++.+|||++++++.... .-..+.++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 58999999999999999999887643322111 11111111 2334678999999999999997665 6778999999
Q ss_pred cCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHH--HHhccCCeeeeeccc-c---eeEEEEecCCCCCCcc
Q 000621 273 DEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLS--KYFYDCGISHVVGRN-F---PVDVRYVPCATAGTSA 346 (1387)
Q Consensus 273 DEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~--~~f~~~~v~~i~gr~-~---pv~~~~~~~~~~~~~~ 346 (1387)
||||| +++-.|-..+.......+|+.|++++|||++.+.+. +.|...|+-....|. . -++.+|....
T Consensus 176 DEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve------ 248 (400)
T KOG0328|consen 176 DEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE------ 248 (400)
T ss_pred ccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec------
Confidence 99994 777789889999998999999999999999977654 455433332222111 0 1223333221
Q ss_pred chhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecch
Q 000621 347 VASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNV 425 (1387)
Q Consensus 347 ~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~i 425 (1387)
..+-+.+.+..+.....-.+.+|||+|+..++++.+.+++.++.+..+||+|++++|.+++..| .|+.+||++|++
T Consensus 249 ---~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 249 ---KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred ---hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEech
Confidence 1233667777777777788999999999999999999999999999999999999999999999 899999999999
Q ss_pred hhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 426 AETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 426 ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
.+||+|+|.|..||||++|... +.|+||+||+||.| .|.++.++..++..
T Consensus 326 waRGiDv~qVslviNYDLP~nr------------------e~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 326 WARGIDVQQVSLVINYDLPNNR------------------ELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred hhccCCcceeEEEEecCCCccH------------------HHHhhhhccccccCCcceEEEEecHHHHH
Confidence 9999999999999999997654 88999999999998 99999999988764
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-39 Score=397.45 Aligned_cols=331 Identities=19% Similarity=0.228 Sum_probs=254.6
Q ss_pred ccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--------C
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA--------A 196 (1387)
Q Consensus 125 ~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~--------~ 196 (1387)
+|++++ +++.+++.+.++++..|+..|+++|+.++.+.+ ++++||||||||+++...+++.... .
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~d-vlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~ 74 (456)
T PRK10590 2 SFDSLG------LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRD-LMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74 (456)
T ss_pred CHHHcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCCcHHHHHHHHHHHHhhhcccccccCC
Confidence 466666 888999999999999999999999999887765 5558999999999876666554211 1
Q ss_pred CCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-----cccCCCcEEEEChhHHHHHhhcCC-CCCceeEE
Q 000621 197 EQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCI 270 (1387)
Q Consensus 197 ~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~I 270 (1387)
..++||++|||+||.|+.+.+..+...... ........... .....++|+|+|||+|++.+.... .++++++|
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~-~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNI-RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCC-EEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 237999999999999999999887643222 11222222111 123468999999999999886655 78999999
Q ss_pred EEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCC-eeeeeccc---ceeEEEEecCCCCCC
Q 000621 271 IVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCG-ISHVVGRN---FPVDVRYVPCATAGT 344 (1387)
Q Consensus 271 IIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~-v~~i~gr~---~pv~~~~~~~~~~~~ 344 (1387)
|||||| ++++.+|...+...+.......++++||||++.+ .+...+...+ .+.+..+. ..+..++....
T Consensus 154 ViDEah-~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---- 228 (456)
T PRK10590 154 VLDEAD-RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD---- 228 (456)
T ss_pred EeecHH-HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC----
Confidence 999999 8888888887777777777788999999998754 3444433333 23222111 11222221111
Q ss_pred ccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 345 SAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 345 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
.......+..+.......++||||+++.+++.+++.|...++.+..+||+|++++|..+++.| +|+.+|||||
T Consensus 229 ------~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 229 ------KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred ------HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 122334455555555678999999999999999999999999999999999999999999999 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
+++++|||+|+|++||++++|... .+|+||+|||||.| .|.|+.+++.++.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~------------------~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVP------------------EDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCH------------------HHhhhhccccccCCCCeeEEEEecHHHH
Confidence 999999999999999999987643 88999999999998 8999999987653
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.9e-39 Score=403.76 Aligned_cols=331 Identities=18% Similarity=0.218 Sum_probs=257.9
Q ss_pred ccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--CCCeEEE
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA--AEQSIVC 202 (1387)
Q Consensus 125 ~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~Ilv 202 (1387)
+|++++ +++.+++++.++++..|++.|++.|+.++.+++ ++++||||||||+++..++++.... ...++||
T Consensus 7 ~f~~l~------L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~d-vl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LI 79 (629)
T PRK11634 7 TFADLG------LKAPILEALNDLGYEKPSPIQAECIPHLLNGRD-VLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILV 79 (629)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEE
Confidence 477766 889999999999999999999999999887765 5558999999999977776654221 2458999
Q ss_pred eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-----cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCcc
Q 000621 203 TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAH 276 (1387)
Q Consensus 203 ~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaH 276 (1387)
++|||+||.|+++.+..+.........+.++.+... .....++|+|+|||+|++++.... .++++++|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 999999999999999887643222222233332211 123468999999999999987765 78999999999999
Q ss_pred ccccchhHHHHHHHHHHhcccCccEEeecccCCHHH--HH-HHhccCCeeeeeccc---ceeEEEEecCCCCCCccchhh
Q 000621 277 ERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ--LS-KYFYDCGISHVVGRN---FPVDVRYVPCATAGTSAVASY 350 (1387)
Q Consensus 277 er~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~--~~-~~f~~~~v~~i~gr~---~pv~~~~~~~~~~~~~~~~~~ 350 (1387)
.+++..|...+...+...+...++++||||++... +. .|+.+...+.+.... ..+...|....
T Consensus 160 -~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~---------- 228 (629)
T PRK11634 160 -EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW---------- 228 (629)
T ss_pred -HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec----------
Confidence 67888888888877777788899999999987533 33 444433333333221 11222222211
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcC
Q 000621 351 VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETS 429 (1387)
Q Consensus 351 ~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~G 429 (1387)
...+...+..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.| +|+.+|||||+++++|
T Consensus 229 ~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arG 308 (629)
T PRK11634 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARG 308 (629)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcC
Confidence 122334455555556678999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 430 LTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 430 IdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
||+|+|++||++++|.. .++|+||+|||||.| .|.|+.++++.+
T Consensus 309 IDip~V~~VI~~d~P~~------------------~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 309 LDVERISLVVNYDIPMD------------------SESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred CCcccCCEEEEeCCCCC------------------HHHHHHHhccccCCCCcceEEEEechHH
Confidence 99999999999988664 389999999999998 799999998754
No 27
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-38 Score=406.30 Aligned_cols=440 Identities=15% Similarity=0.090 Sum_probs=301.8
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
+++.+.+.+.+.++..|.+.|.+++...+..+++++++||||||||+++..+++......++++++++|+++||.|.+++
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~ 87 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYRE 87 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHH
Confidence 77889999999999999999999999877777888889999999999887766665444567999999999999999999
Q ss_pred HHHHhcCCCCCccEEEecCCCc---cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHH
Q 000621 217 VREESRGCYEDDSVICYPSFSS---AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDL 292 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~~~---~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l 292 (1387)
+.... . .+..++...+... ....+++|+|+||+++...+.... .++++++|||||+| ...+.++...+...+
T Consensus 88 ~~~~~-~--~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-~l~~~~rg~~le~il 163 (720)
T PRK00254 88 FKDWE-K--LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-LIGSYDRGATLEMIL 163 (720)
T ss_pred HHHHh-h--cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC-ccCCccchHHHHHHH
Confidence 88642 1 1233443322211 112357999999999988776543 78999999999999 555544444444444
Q ss_pred HhcccCccEEeecccC-CHHHHHHHhccCCeeeeecccceeEEEEecCCC--CCCccchhhHHHHHHHHHHhhhccCCCc
Q 000621 293 LCRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCAT--AGTSAVASYVSDVVRMVGEVHTTEKEGT 369 (1387)
Q Consensus 293 ~~~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~--~~~~~~~~~~~~~~~~l~~i~~~~~~g~ 369 (1387)
.....+.|+|+||||+ +++.+++|++. +.+....+..|.......... ........+.......+.+.. ..+++
T Consensus 164 ~~l~~~~qiI~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~ 240 (720)
T PRK00254 164 THMLGRAQILGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKG 240 (720)
T ss_pred HhcCcCCcEEEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCC
Confidence 4456678999999998 68889999853 333333333333211111100 000000111122233333333 24789
Q ss_pred EEEEeCCHHHHHHHHHHhcC---------------------------------CCCceEeccCCCCHhhhhhhhccC-CC
Q 000621 370 ILAFLTSKMEVEWACEKFDA---------------------------------PSAVALPFHGQLSFDEQFCVFKSY-PG 415 (1387)
Q Consensus 370 iLVF~~s~~eie~l~~~L~~---------------------------------~~~~v~~lh~~l~~~er~~v~~~f-~g 415 (1387)
+||||+++..++.++..|.. ....+.++||+|++++|..+++.| +|
T Consensus 241 vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G 320 (720)
T PRK00254 241 ALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREG 320 (720)
T ss_pred EEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC
Confidence 99999999999887755521 012489999999999999999999 89
Q ss_pred ceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeecccc-
Q 000621 416 RRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSD- 491 (1387)
Q Consensus 416 ~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~- 491 (1387)
..+|||||+++++|+|+|++++||.... .|+ ..+ ..+++..+|.||+|||||.| .|.|+.+.+.++
T Consensus 321 ~i~VLvaT~tLa~Gvnipa~~vVI~~~~----~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~ 390 (720)
T PRK00254 321 LIKVITATPTLSAGINLPAFRVIIRDTK----RYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP 390 (720)
T ss_pred CCeEEEeCcHHhhhcCCCceEEEECCce----EcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch
Confidence 9999999999999999999999996432 332 111 23456689999999999975 799999987543
Q ss_pred ---cccC---------CCCCCcchhccchHHHHHHHHHcC-CCCCC--------CccccCCCc----HHHHHHHHHHHHH
Q 000621 492 ---FETR---------PLNQEPEIHRVHLGIAVLRILALG-IRDVQ--------GFDFIDAPS----AKAIEMAIRNLVQ 546 (1387)
Q Consensus 492 ---~~~~---------~~~~~pEi~r~~L~~~~L~l~~lg-i~~~~--------~f~~ld~P~----~~~l~~al~~L~~ 546 (1387)
++.+ ...+.++. |...++...+.| +.+.. .|.+...|+ .+.+..+++.|.+
T Consensus 391 ~~~~~~~~~~~pe~l~s~l~~es~----l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~ 466 (720)
T PRK00254 391 SKLMERYIFGKPEKLFSMLSNESA----FRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLE 466 (720)
T ss_pred HHHHHHHHhCCchhhhccCCchHH----HHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHH
Confidence 2222 11122223 334445544444 33221 122222343 3457788899999
Q ss_pred cCceeccC-CccccCHHHHHhhhcCCChhhHHHHHHHhhh----cchHHHHHHhHH
Q 000621 547 LGAIKLNN-GVFELTEEGKFLVKLGIEPRLGKLILSCFRR----RLGREGLVLAAV 597 (1387)
Q Consensus 547 lgal~~~~-~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~----~c~~~~l~iaA~ 597 (1387)
.|+|+.++ +.+.+|++|+.++.++++|..++.+..++.. .....++-+.+.
T Consensus 467 ~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~ 522 (720)
T PRK00254 467 NEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAS 522 (720)
T ss_pred CCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhC
Confidence 99997643 5678999999999999999999999877653 233444555543
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.7e-39 Score=392.52 Aligned_cols=332 Identities=17% Similarity=0.211 Sum_probs=257.6
Q ss_pred ccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc------ccCCC
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG------IAAEQ 198 (1387)
Q Consensus 125 ~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~------~~~~~ 198 (1387)
+|++++ +.+.+++.+.+.++..|++.|+++|+.++.+++ ++++||||||||+++...++... .....
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d-~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~ 74 (434)
T PRK11192 2 TFSELE------LDESLLEALQDKGYTRPTAIQAEAIPPALDGRD-VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPP 74 (434)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhhccccCCCCc
Confidence 466666 888999999999999999999999999997766 55589999999998655554431 11235
Q ss_pred eEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEE
Q 000621 199 SIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCII 271 (1387)
Q Consensus 199 ~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~II 271 (1387)
+++|++||++||.|+++.+..+..... ..++...+... ....+++|+|+|||+|++.+.... .+.++++||
T Consensus 75 ~~lil~Pt~eLa~Q~~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lV 152 (434)
T PRK11192 75 RILILTPTRELAMQVADQARELAKHTH--LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLI 152 (434)
T ss_pred eEEEECCcHHHHHHHHHHHHHHHccCC--cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEE
Confidence 899999999999999999988764332 23333222211 123467999999999999987766 688999999
Q ss_pred EcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHH---HHHHhccCCeee-eeccc---ceeEEEEecCCCCCC
Q 000621 272 VDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ---LSKYFYDCGISH-VVGRN---FPVDVRYVPCATAGT 344 (1387)
Q Consensus 272 IDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~---~~~~f~~~~v~~-i~gr~---~pv~~~~~~~~~~~~ 344 (1387)
||||| ++++..|...+.......+...|+++||||++... +...+...++.. ..... ..+...+..
T Consensus 153 iDEah-~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~------ 225 (434)
T PRK11192 153 LDEAD-RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR------ 225 (434)
T ss_pred EECHH-HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE------
Confidence 99999 88888888777776666677789999999997543 444443333221 11100 011122211
Q ss_pred ccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 345 SAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 345 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
.+........+..+......+++||||+++.+++.+++.|...++.+..+||+|++.+|..+++.| +|+.+|||||
T Consensus 226 ---~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 226 ---ADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred ---eCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 112344566666667656778999999999999999999999999999999999999999999999 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
+++++|||+|+|++||++++|. |...|+||+|||||.| .|.++.+++..+..
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~------------------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPR------------------SADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred cccccCccCCCCCEEEEECCCC------------------CHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 9999999999999999998865 4489999999999998 89999999877654
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.8e-39 Score=399.62 Aligned_cols=337 Identities=16% Similarity=0.217 Sum_probs=253.0
Q ss_pred ccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc----
Q 000621 118 DANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG---- 193 (1387)
Q Consensus 118 ~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~---- 193 (1387)
..+.++..|++++ +++.+++.+.+.++..|++.|+++|+.++.++++ +++||||||||+++..+++...
T Consensus 115 ~~p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dv-iv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 115 AVPPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSL-LVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCCchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCE-EEEecCCCCccHHHHHHHHHHHHhhc
Confidence 4456677888777 8899999999999999999999999998876655 5579999999998666655431
Q ss_pred -----ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-----cccCCCcEEEEChhHHHHHhhcCC-
Q 000621 194 -----IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCLLQHFMNDR- 262 (1387)
Q Consensus 194 -----~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~~- 262 (1387)
...+.++++++|||+||.|+.+.+.....+... ..+....+... ....+.+|+|+|||+|.+.+....
T Consensus 188 ~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~-~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~ 266 (518)
T PLN00206 188 SGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPF-KTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDI 266 (518)
T ss_pred cccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCc-eEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 113458999999999999999988877544322 12222221111 123468999999999999887654
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeecccc-e---eEEEE
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNF-P---VDVRY 336 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~-p---v~~~~ 336 (1387)
.++++++||||||| ++++.+|...+.+.+... ++.|++++|||++.+ .+...+...++....+... + +...+
T Consensus 267 ~l~~v~~lViDEad-~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~ 344 (518)
T PLN00206 267 ELDNVSVLVLDEVD-CMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLA 344 (518)
T ss_pred cchheeEEEeecHH-HHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEE
Confidence 78999999999999 888888877766555444 578999999999753 4666665444332222211 1 11111
Q ss_pred ecCCCCCCccchhhHHHHHHHHHHhhhc--cCCCcEEEEeCCHHHHHHHHHHhcC-CCCceEeccCCCCHhhhhhhhccC
Q 000621 337 VPCATAGTSAVASYVSDVVRMVGEVHTT--EKEGTILAFLTSKMEVEWACEKFDA-PSAVALPFHGQLSFDEQFCVFKSY 413 (1387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVF~~s~~eie~l~~~L~~-~~~~v~~lh~~l~~~er~~v~~~f 413 (1387)
..... ......+..++.. ...+++||||+++..++.+++.|.. .++.+..+||+|++++|..+++.|
T Consensus 345 ~~~~~----------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~F 414 (518)
T PLN00206 345 IWVET----------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSF 414 (518)
T ss_pred Eeccc----------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence 11110 1112223333322 2346899999999999999999974 688999999999999999999999
Q ss_pred -CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 414 -PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 414 -~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
.|+.+|||||+++++|||+|+|++||++++|. |..+|+||+|||||.| .|.++.|++.++
T Consensus 415 r~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~------------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 415 LVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPN------------------TIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred HCCCCCEEEEecHhhccCCcccCCEEEEeCCCC------------------CHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 89999999999999999999999999998865 4499999999999998 899999998765
Q ss_pred c
Q 000621 492 F 492 (1387)
Q Consensus 492 ~ 492 (1387)
.
T Consensus 477 ~ 477 (518)
T PLN00206 477 R 477 (518)
T ss_pred H
Confidence 3
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-39 Score=352.60 Aligned_cols=333 Identities=18% Similarity=0.246 Sum_probs=260.2
Q ss_pred cccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--CCCe
Q 000621 122 DVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA--AEQS 199 (1387)
Q Consensus 122 ~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~ 199 (1387)
...+|+.|| +.+|+.+.++.++..-|+++|+..|+.+|.+.+++- +|.||||||+++...+++.... .+--
T Consensus 5 t~~~F~~LG------l~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig-~AkTGsGKT~AFaLPil~rLsedP~giF 77 (442)
T KOG0340|consen 5 TAKPFSILG------LSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIG-CAKTGSGKTAAFALPILNRLSEDPYGIF 77 (442)
T ss_pred ccCchhhcC------ccHHHHHHHHHhcCCCCCchHhhhhHHHhccccccc-ccccCCCcchhhhHHHHHhhccCCCcce
Confidence 456899999 666699999999999999999999999999888877 7999999999988888775322 2336
Q ss_pred EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEE--e--cCCCccccCCCcEEEEChhHHHHHhhcCC-----CCCceeEE
Q 000621 200 IVCTQPRKIAAISLAQRVREESRGCYEDDSVIC--Y--PSFSSAQHFDSKVIYMTDHCLLQHFMNDR-----DLSRISCI 270 (1387)
Q Consensus 200 Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~--~--~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-----~l~~l~~I 270 (1387)
.+++.|||+||.|+++++............+.+ . .......+.+++++++|||+|-.++.++. .+.++.++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 789999999999999999988644333222222 1 12223345689999999999999998874 68899999
Q ss_pred EEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHHhccCCeeee--------ecccc--eeEEEEecCC
Q 000621 271 IVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHV--------VGRNF--PVDVRYVPCA 340 (1387)
Q Consensus 271 IIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~~~~v~~i--------~gr~~--pv~~~~~~~~ 340 (1387)
|+|||+ |.++.+|-..+--.....++..|.+++|||++.. +...+ ++++-.- +|-.. .....|+..+
T Consensus 158 VlDEAD-rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~-i~ql~-~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 158 VLDEAD-RVLAGCFPDILEGIEECLPKPRQTLLFSATITDT-IKQLF-GCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred Eecchh-hhhccchhhHHhhhhccCCCccceEEEEeehhhH-HHHhh-cCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 999999 9999999888777777777788999999998643 33333 2332110 00000 0111121111
Q ss_pred CCCCccchhhHHHHHHHHHHhh---hccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCc
Q 000621 341 TAGTSAVASYVSDVVRMVGEVH---TTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGR 416 (1387)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~i~---~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~ 416 (1387)
.+. +-..+.+++ +.+..+.++||+++..+|+.++..|+..++.+..+||.|++.+|...+..| ++.
T Consensus 235 --------~~v--kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~ 304 (442)
T KOG0340|consen 235 --------IDV--KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA 304 (442)
T ss_pred --------hhh--hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC
Confidence 111 111122222 223679999999999999999999999999999999999999999999999 899
Q ss_pred eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 417 RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 417 ~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
.+||+|||+|+||+|||.|..|||+++|+++ .+|+||+||++|.| .|.++.++++.|.
T Consensus 305 ~~iliaTDVAsRGLDIP~V~LVvN~diPr~P------------------~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 305 ARILIATDVASRGLDIPTVELVVNHDIPRDP------------------KDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred ccEEEEechhhcCCCCCceeEEEecCCCCCH------------------HHHHHhhcchhcccCCcceEEEechhhH
Confidence 9999999999999999999999999999976 88999999999998 8999999998754
No 31
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=372.20 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=270.2
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc----cccC--
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS----GIAA-- 196 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~----~~~~-- 196 (1387)
+..|+++. +...++++++..++..|+.+|++.|+.+|.+++++- .|.||||||++++.++++. .|..
T Consensus 68 ~~kF~dlp------ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlG-AAkTGSGKTLAFlvPvlE~L~r~kWs~~D 140 (758)
T KOG0343|consen 68 IKKFADLP------LSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLG-AAKTGSGKTLAFLVPVLEALYRLKWSPTD 140 (758)
T ss_pred hhhHHhCC------CchHHHHhHhhcCCccHHHHHHhhcchhccCccccc-ccccCCCceeeehHHHHHHHHHcCCCCCC
Confidence 34566665 788899999999999999999999999999999988 6999999999966666654 3332
Q ss_pred CCeEEEeccHHHHHHHHHHHHHHHhcCCC--CCccEEEe-cCCCccccCCCcEEEEChhHHHHHhhcCC--CCCceeEEE
Q 000621 197 EQSIVCTQPRKIAAISLAQRVREESRGCY--EDDSVICY-PSFSSAQHFDSKVIYMTDHCLLQHFMNDR--DLSRISCII 271 (1387)
Q Consensus 197 ~~~Ilv~~P~r~LA~qla~rv~~~~~~~~--~~~~vg~~-~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~II 271 (1387)
+-.+||+.|||+||.|+.+.+.+...... .|-.+|+. ..++...-.+.+|+|||||+|++++...+ .-+++.++|
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 34688999999999999999998764322 22222221 11222233568999999999999999888 556889999
Q ss_pred EcCccccccchhHHHHHHHHHHhcccCccEEeecccCC--HHHHHHHhccCCeeeeec----ccce--eEEEEecCCCCC
Q 000621 272 VDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD--AHQLSKYFYDCGISHVVG----RNFP--VDVRYVPCATAG 343 (1387)
Q Consensus 272 IDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~--~~~~~~~f~~~~v~~i~g----r~~p--v~~~~~~~~~~~ 343 (1387)
+|||| |+++++|...+-.++...++..|+++||||.. ...+++.-...|.+.... ...| ...+|...
T Consensus 221 LDEAD-R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v---- 295 (758)
T KOG0343|consen 221 LDEAD-RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV---- 295 (758)
T ss_pred eccHH-HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE----
Confidence 99999 99999999999888989999999999999974 555776644444332221 1111 22233322
Q ss_pred CccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC--CCCceEeccCCCCHhhhhhhhccC-CCceEEE
Q 000621 344 TSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVI 420 (1387)
Q Consensus 344 ~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVL 420 (1387)
.+++++..+..+..++...++|||+.|.+++..+++.+.+ +|+++..|||.|++..|..++..| ..+.-||
T Consensus 296 ------~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vL 369 (758)
T KOG0343|consen 296 ------PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVL 369 (758)
T ss_pred ------ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEE
Confidence 2477888888888889999999999999999999999974 789999999999999999999999 7778999
Q ss_pred EecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 421 FATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 421 VaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
+||++++||+|+|.|++||+++.|-+. ++|+||+||++|.. .|.|+.+.++.+.+
T Consensus 370 F~TDv~aRGLDFpaVdwViQ~DCPedv------------------~tYIHRvGRtAR~~~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 370 FCTDVAARGLDFPAVDWVIQVDCPEDV------------------DTYIHRVGRTARYKERGESLLMLTPSEEE 425 (758)
T ss_pred EeehhhhccCCCcccceEEEecCchhH------------------HHHHHHhhhhhcccCCCceEEEEcchhHH
Confidence 999999999999999999998776544 99999999999987 99999999987643
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-38 Score=398.31 Aligned_cols=329 Identities=14% Similarity=0.130 Sum_probs=251.5
Q ss_pred ccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc---------c
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI---------A 195 (1387)
Q Consensus 125 ~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~---------~ 195 (1387)
.|++++ +++.+++.+.+.++..|+.+|++.|+.++.++++++ +||||||||+++..++++... .
T Consensus 10 ~f~~l~------l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~-~ApTGSGKTlafllpil~~l~~~~~~~~~~~ 82 (572)
T PRK04537 10 TFSSFD------LHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAG-QAQTGTGKTLAFLVAVMNRLLSRPALADRKP 82 (572)
T ss_pred ChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEE-EcCCCCcHHHHHHHHHHHHHHhccccccccc
Confidence 577666 889999999999999999999999999887776555 799999999987776665321 1
Q ss_pred CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC--CCCce
Q 000621 196 AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR--DLSRI 267 (1387)
Q Consensus 196 ~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l 267 (1387)
...++||++|||+||.|+++.+..+..... ..++...+... ....+++|+|+|||+|++++.... .+..+
T Consensus 83 ~~~raLIl~PTreLa~Qi~~~~~~l~~~~~--i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 83 EDPRALILAPTRELAIQIHKDAVKFGADLG--LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccCC--ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 135899999999999999999888764332 22332222111 122457999999999999887653 68889
Q ss_pred eEEEEcCccccccchhHHHHHHHHHHhccc--CccEEeecccCCHHHH---HHHhccCCeeeeecccc---eeEEEEecC
Q 000621 268 SCIIVDEAHERSLNTDLLLALVKDLLCRRF--DLRLVIMSATADAHQL---SKYFYDCGISHVVGRNF---PVDVRYVPC 339 (1387)
Q Consensus 268 ~~IIIDEaHer~~~~d~l~~~lk~l~~~~~--~~kiIlmSATl~~~~~---~~~f~~~~v~~i~gr~~---pv~~~~~~~ 339 (1387)
++||||||| ++++.+|...+...+..... +.|+++||||++.... ..++.+...+.+..... .+...+...
T Consensus 161 ~~lViDEAh-~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~ 239 (572)
T PRK04537 161 EICVLDEAD-RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP 239 (572)
T ss_pred eeeEecCHH-HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec
Confidence 999999999 77887787766555544443 6799999999976432 23333322222221111 111111111
Q ss_pred CCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceE
Q 000621 340 ATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRK 418 (1387)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~k 418 (1387)
........+..++......++||||+++..++.+++.|...++.+..+||+|++.+|..+++.| +|+.+
T Consensus 240 ----------~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 240 ----------ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred ----------CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 1233444555566556778999999999999999999999999999999999999999999999 89999
Q ss_pred EEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 419 VIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 419 VLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
|||||+++++|||+|+|++||++++|. |..+|+||+|||||.| .|.|+.|+++.+
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~------------------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPF------------------DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCC------------------CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 999999999999999999999998865 4489999999999998 999999998764
No 33
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.9e-39 Score=366.11 Aligned_cols=326 Identities=16% Similarity=0.222 Sum_probs=257.2
Q ss_pred cccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc----ccc--CCCeEEEeccHHHH
Q 000621 136 RIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS----GIA--AEQSIVCTQPRKIA 209 (1387)
Q Consensus 136 ~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~----~~~--~~~~Ilv~~P~r~L 209 (1387)
.+.+..++++.++++...+.+|+..|+..+.+.+++. .|.||||||++++....+. .+. .+..+++++|||+|
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~-~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTREL 166 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLA-AAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTREL 166 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhhcCccCCCcccee-eeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHH
Confidence 4889999999999999999999999999999886665 7999999999855555443 221 23478899999999
Q ss_pred HHHHHHHHHHHhcCCCCCccEEEecCCCcc------ccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCccccccc
Q 000621 210 AISLAQRVREESRGCYEDDSVICYPSFSSA------QHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAHERSLN 281 (1387)
Q Consensus 210 A~qla~rv~~~~~~~~~~~~vg~~~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaHer~~~ 281 (1387)
|.|++....+++.... ...+++..+..+. ....++|+|+|||+|++++++.+ ...+++++|+|||| |.++
T Consensus 167 A~Q~~~eak~Ll~~h~-~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd 244 (543)
T KOG0342|consen 167 AMQIFAEAKELLKYHE-SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLD 244 (543)
T ss_pred HHHHHHHHHHHHhhCC-CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhh
Confidence 9999999999885542 2345554443332 23479999999999999999987 56777899999999 9999
Q ss_pred hhHHHHHHHHHHhcccCccEEeecccCCHHH--HHHHhccC-Ce-eeeecccc-----eeEEEEecCCCCCCccchhhHH
Q 000621 282 TDLLLALVKDLLCRRFDLRLVIMSATADAHQ--LSKYFYDC-GI-SHVVGRNF-----PVDVRYVPCATAGTSAVASYVS 352 (1387)
Q Consensus 282 ~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~--~~~~f~~~-~v-~~i~gr~~-----pv~~~~~~~~~~~~~~~~~~~~ 352 (1387)
.+|..++.+++...+...|.+++|||.+.+. ++...... ++ +.+..... .++.-|...+. .
T Consensus 245 ~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~----------~ 314 (543)
T KOG0342|consen 245 IGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS----------D 314 (543)
T ss_pred cccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc----------c
Confidence 9999999999999999999999999987653 43322221 11 11111111 12222222221 1
Q ss_pred HHHHHHHHhhhccC-CCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCC
Q 000621 353 DVVRMVGEVHTTEK-EGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSL 430 (1387)
Q Consensus 353 ~~~~~l~~i~~~~~-~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GI 430 (1387)
..+..+..+++... ..+|||||+|...+..+++.|+..+++|..+||++++..|..++..| +.+.-||||||+++||+
T Consensus 315 ~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 12333444444333 38999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred CCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 431 TIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 431 dIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
|+|+|++||++|.|.+. ++|+||+||+||.| .|.++.+..+++.
T Consensus 395 D~P~V~~VvQ~~~P~d~------------------~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDP------------------EQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred CCCCceEEEEeCCCCCH------------------HHHHHHhccccccCCCceEEEEeChhHH
Confidence 99999999999998876 99999999999998 9999999988653
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-39 Score=361.75 Aligned_cols=342 Identities=16% Similarity=0.217 Sum_probs=265.0
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc-----ccCCC--eEEEeccHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG-----IAAEQ--SIVCTQPRKIA 209 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~-----~~~~~--~Ilv~~P~r~L 209 (1387)
+++++++++...|+...++.|...|+..+.+.|+++ .|+||||||++++.++++.. ....+ ..+|+.|||+|
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvv-eavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVV-EAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEE-EcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 778999999999999999999999999887777776 89999999999888887643 12222 57899999999
Q ss_pred HHHHHHHHHHHhcCCC---CCccEEEecCCCcc---ccCCCcEEEEChhHHHHHhhcCC---CCCceeEEEEcCcccccc
Q 000621 210 AISLAQRVREESRGCY---EDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMNDR---DLSRISCIIVDEAHERSL 280 (1387)
Q Consensus 210 A~qla~rv~~~~~~~~---~~~~vg~~~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~~---~l~~l~~IIIDEaHer~~ 280 (1387)
|.|+.+.+..+..... ....+|+....++. ...++.|+|+|||+|.+++++.. .+..+.++|+|||| |.+
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLl 170 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLL 170 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHh
Confidence 9999988877654311 11122221111111 23578999999999999998854 45599999999999 999
Q ss_pred chhHHHHHHHHHHhcccCccEEeecccCCH--HHHHHHhccCCeee-eeccc---ce--eEEEEecCCCCCCccchhhHH
Q 000621 281 NTDLLLALVKDLLCRRFDLRLVIMSATADA--HQLSKYFYDCGISH-VVGRN---FP--VDVRYVPCATAGTSAVASYVS 352 (1387)
Q Consensus 281 ~~d~l~~~lk~l~~~~~~~kiIlmSATl~~--~~~~~~f~~~~v~~-i~gr~---~p--v~~~~~~~~~~~~~~~~~~~~ 352 (1387)
+++|...+..++..+++..++-++|||... +.+.......|+-. +.... .| +..+|.... ..
T Consensus 171 dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~----------a~ 240 (567)
T KOG0345|consen 171 DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE----------AD 240 (567)
T ss_pred cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec----------HH
Confidence 999999999999999999999999999854 34555443333322 22111 23 445555443 24
Q ss_pred HHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcC
Q 000621 353 DVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETS 429 (1387)
Q Consensus 353 ~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~G 429 (1387)
.+...+.+++.+...+++|||.+|...++..+..|.. ....+..+||.|.+..|.++++.| .....+++|||+|+||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 5666677777778889999999999999998888764 567899999999999999999999 6678999999999999
Q ss_pred CCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc--ccc-CCCCCCcchhc
Q 000621 430 LTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD--FET-RPLNQEPEIHR 505 (1387)
Q Consensus 430 IdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~--~~~-~~~~~~pEi~r 505 (1387)
||||+|++||+++.|++. ++++||+|||||.| .|.++.|..+.+ |.. |.-...|++.+
T Consensus 321 lDip~iD~VvQ~DpP~~~------------------~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDP------------------SSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred CCCCCceEEEecCCCCCh------------------hHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999999999999999876 88999999999998 899888876643 333 34444566655
Q ss_pred cch
Q 000621 506 VHL 508 (1387)
Q Consensus 506 ~~L 508 (1387)
...
T Consensus 383 ~~~ 385 (567)
T KOG0345|consen 383 IDT 385 (567)
T ss_pred hcc
Confidence 443
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-37 Score=381.24 Aligned_cols=331 Identities=18% Similarity=0.222 Sum_probs=248.7
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc--------
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-------- 195 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-------- 195 (1387)
..|.+++ +++.+++.+.+.++..|...|.++|..++.++++++ +||||||||+++...+++....
T Consensus 87 ~~f~~~~------l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~-~apTGSGKTlay~lpil~~l~~~~~~~~~~ 159 (475)
T PRK01297 87 TRFHDFN------LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIG-RAQTGTGKTAAFLISIINQLLQTPPPKERY 159 (475)
T ss_pred CCHhHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEE-ECCCCChHHHHHHHHHHHHHHhcCcccccc
Confidence 4565555 889999999999999999999999998887776655 7999999999876666553211
Q ss_pred -CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-------cccCCCcEEEEChhHHHHHhhcCC-CCCc
Q 000621 196 -AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS-------AQHFDSKVIYMTDHCLLQHFMNDR-DLSR 266 (1387)
Q Consensus 196 -~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~-------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~ 266 (1387)
...++++++|||+||.|+++.+..+..... ..+....+..+ .....++|+|+||++|+..+.... .+++
T Consensus 160 ~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~ 237 (475)
T PRK01297 160 MGEPRALIIAPTRELVVQIAKDAAALTKYTG--LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDM 237 (475)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHhhccCC--CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCccccc
Confidence 135899999999999999999988754322 12222222111 123458999999999998876544 7899
Q ss_pred eeEEEEcCccccccchhHHHHHHHHHHhcc--cCccEEeecccCCHH--HHHHHhccCCe-eeeecccc---eeEEEEec
Q 000621 267 ISCIIVDEAHERSLNTDLLLALVKDLLCRR--FDLRLVIMSATADAH--QLSKYFYDCGI-SHVVGRNF---PVDVRYVP 338 (1387)
Q Consensus 267 l~~IIIDEaHer~~~~d~l~~~lk~l~~~~--~~~kiIlmSATl~~~--~~~~~f~~~~v-~~i~gr~~---pv~~~~~~ 338 (1387)
+++||||||| +.++.+|...+.+.+.... .+.+++++|||++.+ .+.+.+...+. +.+..... .+..++..
T Consensus 238 l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 316 (475)
T PRK01297 238 VEVMVLDEAD-RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYA 316 (475)
T ss_pred CceEEechHH-HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEE
Confidence 9999999999 6777777666555554442 357999999998643 33443333332 22221110 11111111
Q ss_pred CCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCce
Q 000621 339 CATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRR 417 (1387)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~ 417 (1387)
.. ..+....+..++.....+++||||+++.+++.+++.|...++.+..+||+++.++|.++++.| +|+.
T Consensus 317 ~~----------~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~ 386 (475)
T PRK01297 317 VA----------GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKI 386 (475)
T ss_pred ec----------chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 11 122344555555556668999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 418 KVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 418 kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
+|||||+++++|||||+|++||++|+|. |.++|+||+|||||.| .|.++.+++++|.
T Consensus 387 ~vLvaT~~l~~GIDi~~v~~VI~~~~P~------------------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 387 RVLVATDVAGRGIHIDGISHVINFTLPE------------------DPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred cEEEEccccccCCcccCCCEEEEeCCCC------------------CHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 9999999999999999999999999865 4499999999999998 8999999997753
No 36
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.8e-37 Score=374.93 Aligned_cols=334 Identities=14% Similarity=0.148 Sum_probs=252.7
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeE
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSI 200 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~I 200 (1387)
..+|++++ +++.+++++.+.++..|.+.|++++..++.+.+++ ++||||||||+++...++.... ..+.++
T Consensus 27 ~~~~~~l~------l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~i-i~apTGsGKT~~~~l~~l~~~~~~~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALK------LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTI-GQAQSGTGKTATFVIAALQLIDYDLNACQA 99 (401)
T ss_pred cCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEE-EECCCCChHHHHHHHHHHHHhcCCCCCceE
Confidence 46788777 88889999999999999999999999988877765 5799999999987666655421 235689
Q ss_pred EEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC------ccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEc
Q 000621 201 VCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS------SAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVD 273 (1387)
Q Consensus 201 lv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~------~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIID 273 (1387)
++++|+++||.|+.+.+......... .+....+.. .....+++|+|+||+.|.+.+.... .++++++||||
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKV--RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCc--eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 99999999999999888876532211 111111111 1122357999999999999887665 78999999999
Q ss_pred CccccccchhHHHHHHHHHHhcccCccEEeecccCCHHH--HHHHhccCCe-eeeeccc---ceeEEEEecCCCCCCccc
Q 000621 274 EAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ--LSKYFYDCGI-SHVVGRN---FPVDVRYVPCATAGTSAV 347 (1387)
Q Consensus 274 EaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~--~~~~f~~~~v-~~i~gr~---~pv~~~~~~~~~~~~~~~ 347 (1387)
||| +..+.++...+...+....++.|++++|||++.+. +...+...+. +.+.... ..+..++....
T Consensus 178 Eah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 249 (401)
T PTZ00424 178 EAD-EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVE------- 249 (401)
T ss_pred cHH-HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecC-------
Confidence 999 66666666666666666778899999999987643 2222322222 2222111 11122222211
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchh
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVA 426 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ia 426 (1387)
........+..+.......++||||+++.+++.+++.|...++.+..+||+|++++|..+++.| +|+.+|||||+++
T Consensus 250 --~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l 327 (401)
T PTZ00424 250 --KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLL 327 (401)
T ss_pred --hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 1122333444445555668899999999999999999999999999999999999999999999 8999999999999
Q ss_pred hcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 427 ETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 427 e~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
++|||+|++++||++++|. |..+|+||+|||||.| .|.|+.|+++++..
T Consensus 328 ~~GiDip~v~~VI~~~~p~------------------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 328 ARGIDVQQVSLVINYDLPA------------------SPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred cCCcCcccCCEEEEECCCC------------------CHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 9999999999999988754 4589999999999998 99999999988654
No 37
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-38 Score=340.72 Aligned_cols=335 Identities=17% Similarity=0.144 Sum_probs=268.0
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC--CeE
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE--QSI 200 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~--~~I 200 (1387)
-..|++.. +.+.++..++..|+..|.++|.+.|+-++.+.+++. .|..|+|||.++...+++..-... -+.
T Consensus 84 G~efEd~~------Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLa-RaKNGTGKT~a~~IP~Lekid~~~~~IQ~ 156 (459)
T KOG0326|consen 84 GNEFEDYC------LKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILA-RAKNGTGKTAAYCIPVLEKIDPKKNVIQA 156 (459)
T ss_pred CccHHHhh------hhHHHHHHHHHhccCCCCCccccccceeecchhhhh-hccCCCCCccceechhhhhcCccccceeE
Confidence 34566655 789999999999999999999999999998887776 799999999987667777543322 267
Q ss_pred EEeccHHHHHHHHHHHHHHHhcCCCCCc--cEEEecCCCcc--ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCc
Q 000621 201 VCTQPRKIAAISLAQRVREESRGCYEDD--SVICYPSFSSA--QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEA 275 (1387)
Q Consensus 201 lv~~P~r~LA~qla~rv~~~~~~~~~~~--~vg~~~~~~~~--~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEa 275 (1387)
+|++|||+||.|..+.+.+..+...... ..|+..-.++. .....+++|+|||++++...+.- .+++...+|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 8899999999999988888765443211 11221111221 33467999999999999987765 8999999999999
Q ss_pred cccccchhHHHHHHHHHHhcccCccEEeecccCCH--HHHH-HHhccCCeeeeeccc--ceeEEEEecCCCCCCccchhh
Q 000621 276 HERSLNTDLLLALVKDLLCRRFDLRLVIMSATADA--HQLS-KYFYDCGISHVVGRN--FPVDVRYVPCATAGTSAVASY 350 (1387)
Q Consensus 276 Her~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~--~~~~-~~f~~~~v~~i~gr~--~pv~~~~~~~~~~~~~~~~~~ 350 (1387)
| ..++.||...+.+.+..++++.|++++|||.+. ..|. +++.++-.+...... .-|..+|.-..
T Consensus 237 D-KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~---------- 305 (459)
T KOG0326|consen 237 D-KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVE---------- 305 (459)
T ss_pred h-hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeec----------
Confidence 9 899999999999999999999999999999864 3333 444433333322221 12333333221
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcC
Q 000621 351 VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETS 429 (1387)
Q Consensus 351 ~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~G 429 (1387)
...++..+..+.....-.+.|||||+...+|.+|..+.+.|+.+..+|+.|.++.|.++|..| +|..+.+|||+.+.||
T Consensus 306 e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRG 385 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRG 385 (459)
T ss_pred hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcc
Confidence 134556666666666778999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 430 LTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 430 IdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
|||++|++|||+++||.. ++|.||+||+||.| .|.++.|++-++-.
T Consensus 386 IDiqavNvVINFDfpk~a------------------EtYLHRIGRsGRFGhlGlAInLityedrf 432 (459)
T KOG0326|consen 386 IDIQAVNVVINFDFPKNA------------------ETYLHRIGRSGRFGHLGLAINLITYEDRF 432 (459)
T ss_pred cccceeeEEEecCCCCCH------------------HHHHHHccCCccCCCcceEEEEEehhhhh
Confidence 999999999999999976 89999999999999 99999999977643
No 38
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-37 Score=340.05 Aligned_cols=340 Identities=19% Similarity=0.252 Sum_probs=267.3
Q ss_pred cccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc--------c
Q 000621 122 DVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS--------G 193 (1387)
Q Consensus 122 ~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~--------~ 193 (1387)
+...|++.. .-++.++.++.+.++..|+++|.++.+-+|.+.+.+.| |.||+|||++.+..-+.+ .
T Consensus 217 P~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGV-AQTgtgKtL~~L~pg~ihi~aqp~~~~ 290 (629)
T KOG0336|consen 217 PVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGV-AQTGTGKTLAFLLPGFIHIDAQPKRRE 290 (629)
T ss_pred CcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEE-EecCCCcCHHHhccceeeeeccchhhh
Confidence 444566422 35788999999999999999999999999988888875 899999999744322211 1
Q ss_pred ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcCC-CCCce
Q 000621 194 IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMNDR-DLSRI 267 (1387)
Q Consensus 194 ~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l 267 (1387)
...+..++++.|||+||.|+.-.+.++.-. +...+..+.+.... ...+..|+++|||+|.+...... .|..+
T Consensus 291 qr~~p~~lvl~ptreLalqie~e~~kysyn--g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 291 QRNGPGVLVLTPTRELALQIEGEVKKYSYN--GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred ccCCCceEEEeccHHHHHHHHhHHhHhhhc--CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeee
Confidence 123457999999999999999888887522 22234444433222 34578999999999999877666 89999
Q ss_pred eEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCH--HHHHHHhccCCeeeeecccceeEEEEecCCCCCCc
Q 000621 268 SCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADA--HQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTS 345 (1387)
Q Consensus 268 ~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~--~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~ 345 (1387)
.++|+|||| |++|++|...+.++++..||+.++++.|||.+. ..++.-+...|++...|...-+...-....
T Consensus 369 TYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~----- 442 (629)
T KOG0336|consen 369 TYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQN----- 442 (629)
T ss_pred EEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeee-----
Confidence 999999999 999999999999999999999999999999764 446544445667766665443322211110
Q ss_pred cchhhHHHHHHHHHHhhhc-cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 346 AVASYVSDVVRMVGEVHTT-EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 346 ~~~~~~~~~~~~l~~i~~~-~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
.+...-.++...+..+... ....++||||..+..++.+...|.-.|+....+||+-.+.+|+.+++.| +|+.+|||||
T Consensus 443 i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT 522 (629)
T KOG0336|consen 443 IIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT 522 (629)
T ss_pred EEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEe
Confidence 0111112333444444332 4678999999999999999999988999999999999999999999999 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
++|++|+|+|||++|++|++|... ++|+||+||+||+| .|.++.+++..++.
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nI------------------eeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNI------------------EEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred chhhcCCCchhcceeeccCCCccH------------------HHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 999999999999999999999876 99999999999998 99999999998875
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-37 Score=337.22 Aligned_cols=342 Identities=18% Similarity=0.226 Sum_probs=274.6
Q ss_pred CccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHHHHcccc--C
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYG-EQILVLIGETGCGKSTQLVQFLADSGIA--A 196 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~~~ll~~~~~--~ 196 (1387)
-.+..+|++|+ |.+.+++++..+++..|..+|..+++-.+.. .+++|.++..|+|||+++...++...-. .
T Consensus 86 lyS~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~ 159 (477)
T KOG0332|consen 86 LYSAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV 159 (477)
T ss_pred ccccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc
Confidence 34567888887 9999999999999999999999999988865 4889999999999999988877765322 2
Q ss_pred CCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc---ccCCCcEEEEChhHHHHHhhcC--CCCCceeEEE
Q 000621 197 EQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMND--RDLSRISCII 271 (1387)
Q Consensus 197 ~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~--~~l~~l~~II 271 (1387)
..+.+|+.|+|+||.|+.+.+.+..+.+ +....|..+.... ..-..+|+++|||.+++++..- ..+..+.++|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~--~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFT--ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCce--eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 4588999999999999999998865443 3345555544322 2234689999999999998763 3788999999
Q ss_pred EcCccccccchh-HHHHHHHHHHhcccCccEEeecccCCHH--HHHHH-hccCCeeeeec---ccceeEEEEecCCCCCC
Q 000621 272 VDEAHERSLNTD-LLLALVKDLLCRRFDLRLVIMSATADAH--QLSKY-FYDCGISHVVG---RNFPVDVRYVPCATAGT 344 (1387)
Q Consensus 272 IDEaHer~~~~d-~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~-f~~~~v~~i~g---r~~pv~~~~~~~~~~~~ 344 (1387)
+|||+ .++++. |...-.++....+++.|++++|||.... .|+.- ..+..++.+.. ..+++..+|..+..
T Consensus 238 lDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~--- 313 (477)
T KOG0332|consen 238 LDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC--- 313 (477)
T ss_pred ecchh-hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc---
Confidence 99999 677764 5555666666677799999999998643 35433 34444444443 24678888887754
Q ss_pred ccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 345 SAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 345 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
-+++.+.+..+.....-|+.||||.|++.+.+++..+...|..|..+||.|+.++|..+.+.| .|..+|||+|
T Consensus 314 ------~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 314 ------RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred ------hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 345666666666656779999999999999999999999999999999999999999999999 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
|+++||||++.|..||||++|-...-. ...+.|+||+||+||.| .|.++.|+...+
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~------------pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGE------------PDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCC------------CCHHHHHHHhcccccccccceEEEeecccC
Confidence 999999999999999999998743211 24489999999999999 999999887653
No 40
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-38 Score=357.33 Aligned_cols=343 Identities=19% Similarity=0.227 Sum_probs=245.3
Q ss_pred CccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc------
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG------ 193 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~------ 193 (1387)
..++..|..++ ++..+|+++..+|+..|+.+|...|+.++.+...++-.|+||||||+++-..+++..
T Consensus 177 ~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~ 250 (731)
T KOG0347|consen 177 KVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDD 250 (731)
T ss_pred ccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccch
Confidence 34555666554 889999999999999999999999999999988888899999999998555555410
Q ss_pred ---c----cCCC--eEEEeccHHHHHHHHHHHHHHHhcCCCC--CccEEEec--CCCccccCCCcEEEEChhHHHHHhhc
Q 000621 194 ---I----AAEQ--SIVCTQPRKIAAISLAQRVREESRGCYE--DDSVICYP--SFSSAQHFDSKVIYMTDHCLLQHFMN 260 (1387)
Q Consensus 194 ---~----~~~~--~Ilv~~P~r~LA~qla~rv~~~~~~~~~--~~~vg~~~--~~~~~~~~~~~Ivv~Tpg~Ll~~l~~ 260 (1387)
. .... ..+|+.|||+||.|+.+.+......... ...+|+.. .+.......++|+|+|||+|+.++..
T Consensus 251 s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e 330 (731)
T KOG0347|consen 251 SQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEE 330 (731)
T ss_pred HhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHh
Confidence 0 1122 3889999999999999999887632211 11112211 11122345799999999999999977
Q ss_pred CC----CCCceeEEEEcCccccccchhHHHHHHHHHHh-----cccCccEEeecccCCHHHHHHHhc---c--------C
Q 000621 261 DR----DLSRISCIIVDEAHERSLNTDLLLALVKDLLC-----RRFDLRLVIMSATADAHQLSKYFY---D--------C 320 (1387)
Q Consensus 261 ~~----~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-----~~~~~kiIlmSATl~~~~~~~~f~---~--------~ 320 (1387)
+. .+++++++|+||+| |++.-+....+-+.+.. ..+..|.+++|||++....+..-. + .
T Consensus 331 ~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ 409 (731)
T KOG0347|consen 331 DNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNA 409 (731)
T ss_pred hhhhhhhhhhceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhH
Confidence 65 68889999999999 99887665555443332 345689999999965332211100 0 0
Q ss_pred Ce---eeeec-ccceeEEEEecCCCCCCccchhhHHHHHH-------HHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC
Q 000621 321 GI---SHVVG-RNFPVDVRYVPCATAGTSAVASYVSDVVR-------MVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA 389 (1387)
Q Consensus 321 ~v---~~i~g-r~~pv~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~ 389 (1387)
++ +.-.| +..|.-+...+... ......+..+. ....++-+..+|++|||||+++.+.+++-.|..
T Consensus 410 kiq~Lmk~ig~~~kpkiiD~t~q~~----ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~ 485 (731)
T KOG0347|consen 410 KIQHLMKKIGFRGKPKIIDLTPQSA----TASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN 485 (731)
T ss_pred HHHHHHHHhCccCCCeeEecCcchh----HHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh
Confidence 00 00001 11221111111100 00000111110 001112235689999999999999999999999
Q ss_pred CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhH
Q 000621 390 PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSA 468 (1387)
Q Consensus 390 ~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~ 468 (1387)
.++..+++|+.|.+.+|.+.++.| .....||+||++|+||+|||+|.+||||..|+.. +-|
T Consensus 486 L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrts------------------eiY 547 (731)
T KOG0347|consen 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTS------------------EIY 547 (731)
T ss_pred cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCcc------------------cee
Confidence 999999999999999999999999 7788999999999999999999999999998865 668
Q ss_pred HHHhcccCCCC-CCeEEEeecccc
Q 000621 469 NQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 469 ~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
+||.||++|.+ .|....|+.+.+
T Consensus 548 VHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 548 VHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred EecccccccccCCCeEEEEeChHH
Confidence 99999999998 999999998764
No 41
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=339.69 Aligned_cols=341 Identities=18% Similarity=0.212 Sum_probs=260.2
Q ss_pred cccccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHH--HHH
Q 000621 115 ESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQ--LVQ--FLA 190 (1387)
Q Consensus 115 ~~~~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~--i~~--~ll 190 (1387)
+.++-+.++.+|.++. .+..+++.+++.+...|+++|-+-++.+|.+.+.+-| |-||||||+. +|. +++
T Consensus 161 eGd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGI-AfTGSGKTlvFvLP~imf~L 233 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGI-AFTGSGKTLVFVLPVIMFAL 233 (610)
T ss_pred eCCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeE-EeecCCceEEEeHHHHHHHH
Confidence 4555677788898776 7788999999999999999999999999999888886 8999999986 222 223
Q ss_pred Hc------cccCCCeEEEeccHHHHHHHHHHHHHHHhcCC-----CCC---ccEEEec--CCCccccCCCcEEEEChhHH
Q 000621 191 DS------GIAAEQSIVCTQPRKIAAISLAQRVREESRGC-----YED---DSVICYP--SFSSAQHFDSKVIYMTDHCL 254 (1387)
Q Consensus 191 ~~------~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~-----~~~---~~vg~~~--~~~~~~~~~~~Ivv~Tpg~L 254 (1387)
+. ....+.--++++|+|+||.|..+.+..+.... ..- ..+|+.. ........+.+|+|+|||+|
T Consensus 234 eqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL 313 (610)
T KOG0341|consen 234 EQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL 313 (610)
T ss_pred HHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH
Confidence 32 12234456778899999999998887764211 100 0111111 11122346789999999999
Q ss_pred HHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeecccce
Q 000621 255 LQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNFP 331 (1387)
Q Consensus 255 l~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~p 331 (1387)
.++|.... .|.-++++.+|||| |++|++|..++-..+.......|+++||||++.. .|++.-.-.|+..-.||.-.
T Consensus 314 ~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGA 392 (610)
T KOG0341|consen 314 MDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGA 392 (610)
T ss_pred HHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccc
Confidence 99997776 78888999999999 9999999998887777777788999999999854 34433333344444444332
Q ss_pred eEEEEecCCCCCCccchhhHHHHHH--HHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhh
Q 000621 332 VDVRYVPCATAGTSAVASYVSDVVR--MVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCV 409 (1387)
Q Consensus 332 v~~~~~~~~~~~~~~~~~~~~~~~~--~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v 409 (1387)
........ ..|+..-.. .+.+.+ .....++|||+..+.+++.+.++|--.|+.++.+||+-.+++|...
T Consensus 393 AsldViQe--------vEyVkqEaKiVylLeCL-QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 393 ASLDVIQE--------VEYVKQEAKIVYLLECL-QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred cchhHHHH--------HHHHHhhhhhhhHHHHh-ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHH
Confidence 22222111 223322222 222222 2567899999999999999999999999999999999999999999
Q ss_pred hccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEee
Q 000621 410 FKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLY 487 (1387)
Q Consensus 410 ~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~ 487 (1387)
++.| .|+.+|||||++|+.|+|+|+|.+||||++|.+. ++|+||+||+||.| .|.+.+|+
T Consensus 464 i~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eI------------------ENYVHRIGRTGRsg~~GiATTfI 525 (610)
T KOG0341|consen 464 IEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEI------------------ENYVHRIGRTGRSGKTGIATTFI 525 (610)
T ss_pred HHHHhcCCCceEEEecchhccCCCccchhhccCCChHHH------------------HHHHHHhcccCCCCCcceeeeee
Confidence 9999 8999999999999999999999999999998876 89999999999998 99999999
Q ss_pred ccc
Q 000621 488 SKS 490 (1387)
Q Consensus 488 s~~ 490 (1387)
++.
T Consensus 526 NK~ 528 (610)
T KOG0341|consen 526 NKN 528 (610)
T ss_pred ccc
Confidence 886
No 42
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-36 Score=344.74 Aligned_cols=346 Identities=18% Similarity=0.227 Sum_probs=252.1
Q ss_pred CccccccccccCCccccccHHHHHHHHH-hccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc-----
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKR-LEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG----- 193 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~-~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~----- 193 (1387)
+..-..|.++| +++.+...++. ++..-|+.+|+++|+..|.++|+++ .++||||||++....+....
T Consensus 132 ~fts~~f~~LG------L~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV-~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 132 PFTSAAFASLG------LHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALV-RAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred ccccccchhcC------CCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEE-EcCCCCcccHHHHHHHHHHHHhcCc
Confidence 34445677788 99999999986 8899999999999999998766665 89999999999666665431
Q ss_pred ---ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcccc------CCCcEEEEChhHHHHHhhcCC--
Q 000621 194 ---IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQH------FDSKVIYMTDHCLLQHFMNDR-- 262 (1387)
Q Consensus 194 ---~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~------~~~~Ivv~Tpg~Ll~~l~~~~-- 262 (1387)
...+.-.+|++|||+||.|+++.+.++...+. -..-|+..+++.+.+ ++.+|+|+|||+|+++|.+..
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h-WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i 283 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH-WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSI 283 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCce-EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchh
Confidence 23355789999999999999999999875431 111233444554433 468999999999999998877
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhc-------------ccCccEEeecccCCH--HHHHHHhccCCeeeeec
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCR-------------RFDLRLVIMSATADA--HQLSKYFYDCGISHVVG 327 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~-------------~~~~kiIlmSATl~~--~~~~~~f~~~~v~~i~g 327 (1387)
.++++..||+||+| |.++.+|...+..++... ++.++-+++|||+.. ..+++.-...|+..-..
T Consensus 284 ~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld 362 (708)
T KOG0348|consen 284 KFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLD 362 (708)
T ss_pred eeeeeeEEEecchh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeecc
Confidence 67889999999999 999999877775555432 123678999999853 44655443334332210
Q ss_pred c----cc----------------eeEEEEecCCCCCCcc-ch--hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHH
Q 000621 328 R----NF----------------PVDVRYVPCATAGTSA-VA--SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWAC 384 (1387)
Q Consensus 328 r----~~----------------pv~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~ 384 (1387)
. .. ++..+-.|+..-.... .. -.+-.....+....+.+...++|||+.+.+.++.-+
T Consensus 363 ~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy 442 (708)
T KOG0348|consen 363 KSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHY 442 (708)
T ss_pred chhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHH
Confidence 0 00 0111111111000000 00 111223445555566677789999999999999888
Q ss_pred HHhcC----------------------CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEec
Q 000621 385 EKFDA----------------------PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 385 ~~L~~----------------------~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
..|.. .+..++-|||+|++++|..+|+.| .....|++|||+|+||+|+|+|++||.|
T Consensus 443 ~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 443 SLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred HHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe
Confidence 77642 234688999999999999999999 6777899999999999999999999987
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
+. |.|.++|+||+||+.|.| .|.+..+..+.+.
T Consensus 523 d~------------------P~s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 523 DP------------------PFSTADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred CC------------------CCCHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 65 456699999999999998 8998888776543
No 43
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=352.21 Aligned_cols=324 Identities=19% Similarity=0.196 Sum_probs=248.4
Q ss_pred cccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc------------CCCeEEEe
Q 000621 136 RIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA------------AEQSIVCT 203 (1387)
Q Consensus 136 ~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~------------~~~~Ilv~ 203 (1387)
.+...+..++...++..|++.|+..|+....+.+.+. +|+||||||.+++..+.+..+. ..+.++++
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~a-cAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIl 158 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMA-CAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALIL 158 (482)
T ss_pred chhHHHhhccccccccCCCcceeeccceeecCCceEE-EccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEE
Confidence 3778888999999999999999999998776666655 9999999999966666553221 13589999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCccEEEecC----CCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCcccc
Q 000621 204 QPRKIAAISLAQRVREESRGCYEDDSVICYPS----FSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHER 278 (1387)
Q Consensus 204 ~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~----~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer 278 (1387)
.|||+||.|++++..+..........+.|... .......+++|+|+|||+|.+.+.... .|.++.++|||||| |
T Consensus 159 apTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-r 237 (482)
T KOG0335|consen 159 APTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-R 237 (482)
T ss_pred eCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-H
Confidence 99999999999999998644333222333221 112234579999999999999997776 89999999999999 9
Q ss_pred ccc-hhHHHHHHHHHHhcc----cCccEEeecccCCHH--HHHHHhccC-Ceeeee---ccc-ceeEEEEecCCCCCCcc
Q 000621 279 SLN-TDLLLALVKDLLCRR----FDLRLVIMSATADAH--QLSKYFYDC-GISHVV---GRN-FPVDVRYVPCATAGTSA 346 (1387)
Q Consensus 279 ~~~-~d~l~~~lk~l~~~~----~~~kiIlmSATl~~~--~~~~~f~~~-~v~~i~---gr~-~pv~~~~~~~~~~~~~~ 346 (1387)
++| ++|...+-+++.... ...|.++||||.+.+ .+..+|... .+.... |+. ..+.........
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~----- 312 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE----- 312 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc-----
Confidence 999 999999988877643 368999999998643 355555322 222111 222 222222221111
Q ss_pred chhhHHHHHHHHHHhhhcc----CCC-----cEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCc
Q 000621 347 VASYVSDVVRMVGEVHTTE----KEG-----TILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGR 416 (1387)
Q Consensus 347 ~~~~~~~~~~~l~~i~~~~----~~g-----~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~ 416 (1387)
..+...+..++... ..+ .++|||.+++.+..++..|...++.+.++||..++.+|.+.+..| .|+
T Consensus 313 -----~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~ 387 (482)
T KOG0335|consen 313 -----MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK 387 (482)
T ss_pred -----hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC
Confidence 11222233333221 234 899999999999999999999999999999999999999999999 899
Q ss_pred eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecc
Q 000621 417 RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSK 489 (1387)
Q Consensus 417 ~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~ 489 (1387)
..|+|||++++||+|||+|++||+|++|... .+|+||+||+||.| .|.+..|+..
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~------------------d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADI------------------DDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcch------------------hhHHHhccccccCCCCceeEEEecc
Confidence 9999999999999999999999999999874 88999999999999 9999999983
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.7e-35 Score=373.86 Aligned_cols=329 Identities=18% Similarity=0.191 Sum_probs=228.3
Q ss_pred ccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 125 ~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
.|.. ..|+|......+++.. +|+.-+.+.|++.|..++.+.++++ ++|||+|||+++..+++.. .+.+||+.
T Consensus 436 ~W~~-~~fpw~~~L~~~lk~~--FG~~sFRp~Q~eaI~aiL~GrDVLV-imPTGSGKSLcYQLPAL~~----~GiTLVIS 507 (1195)
T PLN03137 436 KWSS-RNFPWTKKLEVNNKKV--FGNHSFRPNQREIINATMSGYDVFV-LMPTGGGKSLTYQLPALIC----PGITLVIS 507 (1195)
T ss_pred cccc-cCCCchHHHHHHHHHH--cCCCCCCHHHHHHHHHHHcCCCEEE-EcCCCccHHHHHHHHHHHc----CCcEEEEe
Confidence 3554 3478865555555544 4566666778888888887777666 6899999999865555543 35789999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc----------c--ccCCCcEEEEChhHHHH------HhhcCCCCCc
Q 000621 205 PRKIAAISLAQRVREESRGCYEDDSVICYPSFSS----------A--QHFDSKVIYMTDHCLLQ------HFMNDRDLSR 266 (1387)
Q Consensus 205 P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~----------~--~~~~~~Ivv~Tpg~Ll~------~l~~~~~l~~ 266 (1387)
|+++|+.+....+... + ....+...... . .....+|+|+|||+|.. .+........
T Consensus 508 PLiSLmqDQV~~L~~~--G----I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 508 PLVSLIQDQIMNLLQA--N----IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred CHHHHHHHHHHHHHhC--C----CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 9999997544444332 1 11222111110 0 11457999999999752 2222223456
Q ss_pred eeEEEEcCccccccch-hHHHHHHH--HHHhcccCccEEeecccCCHHHH---HHHhccCCeeeeecccceeEEEEecCC
Q 000621 267 ISCIIVDEAHERSLNT-DLLLALVK--DLLCRRFDLRLVIMSATADAHQL---SKYFYDCGISHVVGRNFPVDVRYVPCA 340 (1387)
Q Consensus 267 l~~IIIDEaHer~~~~-d~l~~~lk--~l~~~~~~~kiIlmSATl~~~~~---~~~f~~~~v~~i~gr~~pv~~~~~~~~ 340 (1387)
+++|||||||+.+-+. ||...+.. .+....++.+++++|||++.... .+.+.......+.+......++|....
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~ 661 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVP 661 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEec
Confidence 8999999999655443 67776643 45566788999999999986543 334332222222221122233343221
Q ss_pred CCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEE
Q 000621 341 TAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKV 419 (1387)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kV 419 (1387)
.. ......+...+ .....++..||||.++++++.+++.|...|+.+.+|||+|++++|..+++.| .|+.+|
T Consensus 662 k~-----kk~le~L~~~I---~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 662 KT-----KKCLEDIDKFI---KENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred cc-----hhHHHHHHHHH---HhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 10 01112222222 2223467899999999999999999999999999999999999999999999 899999
Q ss_pred EEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 420 IFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 420 LVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
||||+++++|||+|+|++||++++|+.. ++|.||+|||||.| +|.|+.||+..++.
T Consensus 734 LVATdAFGMGIDkPDVR~VIHydlPkSi------------------EsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIHHSLPKSI------------------EGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred EEEechhhcCCCccCCcEEEEcCCCCCH------------------HHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 9999999999999999999999998754 89999999999999 99999999887653
No 45
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-36 Score=338.84 Aligned_cols=340 Identities=20% Similarity=0.258 Sum_probs=271.9
Q ss_pred cCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc----
Q 000621 119 ANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI---- 194 (1387)
Q Consensus 119 ~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~---- 194 (1387)
.+.++.+|+.+| ....++.++.+..+..|+++|-+.++.++.+.+++-| |.||||||.++...++.+..
T Consensus 218 ~~rpvtsfeh~g------fDkqLm~airk~Ey~kptpiq~qalptalsgrdvigI-AktgSgktaAfi~pm~~himdq~e 290 (731)
T KOG0339|consen 218 PPRPVTSFEHFG------FDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGI-AKTGSGKTAAFIWPMIVHIMDQPE 290 (731)
T ss_pred CCCCcchhhhcC------chHHHHHHHhhhhcccCCcccccccccccccccchhe-eeccCcchhHHHHHHHHHhcchhh
Confidence 344566777666 6788999999999999999999999999999999886 89999999987666654321
Q ss_pred ---cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcCC-CCC
Q 000621 195 ---AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMNDR-DLS 265 (1387)
Q Consensus 195 ---~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~ 265 (1387)
+.+...++++|||+||.|+....+++.+.... ..+..+.+.... ...++.|+|||||+|++++.-.. .+.
T Consensus 291 L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl-~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 291 LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGL-RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccc-eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccce
Confidence 23446778899999999999988887654333 345444443322 23578999999999999986555 899
Q ss_pred ceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCC--HHHHHHHhccCCeeeeecccc----eeEEEEecC
Q 000621 266 RISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD--AHQLSKYFYDCGISHVVGRNF----PVDVRYVPC 339 (1387)
Q Consensus 266 ~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~--~~~~~~~f~~~~v~~i~gr~~----pv~~~~~~~ 339 (1387)
+++++|||||+ |+.+++|...+-.+....+|+.|.++||||+. .+.+++-+...|+-.+.|..- .++......
T Consensus 370 rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~ 448 (731)
T KOG0339|consen 370 RVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVC 448 (731)
T ss_pred eeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeec
Confidence 99999999999 99999999999999999999999999999986 455666666666666555221 111111111
Q ss_pred CCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceE
Q 000621 340 ATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRK 418 (1387)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~k 418 (1387)
.......--++.++......|++|||++...+++.++..|...++.+..+||+|.+.+|.+++..| .+...
T Consensus 449 --------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~ 520 (731)
T KOG0339|consen 449 --------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP 520 (731)
T ss_pred --------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc
Confidence 111122223344445556779999999999999999999999999999999999999999999999 77789
Q ss_pred EEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 419 VIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 419 VLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
|+|||+++++|+|||+++.||++++.++. ..|.||+||+||.| .|.+|.|+++.+.+
T Consensus 521 VlvatDvaargldI~~ikTVvnyD~ardI------------------dththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTVVNYDFARDI------------------DTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred eEEEeeHhhcCCCccccceeecccccchh------------------HHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999997765 78999999999998 99999999998654
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.4e-35 Score=376.00 Aligned_cols=327 Identities=17% Similarity=0.151 Sum_probs=234.8
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQ 215 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~ 215 (1387)
+++.+.+.+.+.++..|...|+++|+.++.+.++++ ++|||||||+++...+++.... .+.++|++.|||+||.|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv-~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVV-ATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEE-ECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHH
Confidence 788999999999999999999999998876665554 7999999999977666654322 34689999999999999999
Q ss_pred HHHHHhcCCCCCccEEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcC-----CCCCceeEEEEcCccccccchhHH
Q 000621 216 RVREESRGCYEDDSVICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMND-----RDLSRISCIIVDEAHERSLNTDLL 285 (1387)
Q Consensus 216 rv~~~~~~~~~~~~vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~-----~~l~~l~~IIIDEaHer~~~~d~l 285 (1387)
++.++. . .+..++.+.+.... ...+++|+++||++|...+... ..++++++||||||| ++.+ .|.
T Consensus 100 ~l~~l~-~--~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah-~~~g-~fg 174 (742)
T TIGR03817 100 AVRELT-L--RGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH-SYRG-VFG 174 (742)
T ss_pred HHHHhc-c--CCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh-hccC-ccH
Confidence 998874 1 12233333222211 1245899999999997654332 148899999999999 4433 222
Q ss_pred ---HHHHHHHH----hcccCccEEeecccC-CHHHHHHHhccCCeeeeecccce---eEEEE-ecCCCC---CC--ccch
Q 000621 286 ---LALVKDLL----CRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFP---VDVRY-VPCATA---GT--SAVA 348 (1387)
Q Consensus 286 ---~~~lk~l~----~~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~p---v~~~~-~~~~~~---~~--~~~~ 348 (1387)
..+++.+. ....+.|++++|||+ ++..+.+.+.+.++..+.....| ....+ .+.... .. ....
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~ 254 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRR 254 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccccccc
Confidence 22233322 234568999999997 45556655555565544322222 22221 221000 00 0001
Q ss_pred hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCC--------CCceEeccCCCCHhhhhhhhccC-CCceEE
Q 000621 349 SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAP--------SAVALPFHGQLSFDEQFCVFKSY-PGRRKV 419 (1387)
Q Consensus 349 ~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~--------~~~v~~lh~~l~~~er~~v~~~f-~g~~kV 419 (1387)
.........+..+.. .+.++||||+|++.++.++..|+.. +..+..|||++++++|.++++.| +|+.++
T Consensus 255 ~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~v 332 (742)
T TIGR03817 255 SASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLG 332 (742)
T ss_pred chHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceE
Confidence 112234444555543 3679999999999999999887642 56788999999999999999999 999999
Q ss_pred EEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecc
Q 000621 420 IFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSK 489 (1387)
Q Consensus 420 LVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~ 489 (1387)
||||+++++|||||+|++||++|+|.+. ++|+||+|||||.| .|.++.+.+.
T Consensus 333 LVaTd~lerGIDI~~vd~VI~~~~P~s~------------------~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 333 VATTNALELGVDISGLDAVVIAGFPGTR------------------ASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred EEECchHhccCCcccccEEEEeCCCCCH------------------HHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999987644 99999999999998 8999998864
No 47
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=324.88 Aligned_cols=333 Identities=18% Similarity=0.188 Sum_probs=261.7
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc----c----c
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG----I----A 195 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~----~----~ 195 (1387)
..|+++| +.+.+++++.+.|+..|+-+|+.+|+-+|++.+++. .|.||||||.+.+..+++.. . .
T Consensus 19 ktFe~~g------LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvva-rArTGSGKT~AYliPllqkll~~k~t~~~e 91 (569)
T KOG0346|consen 19 KTFEEFG------LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVA-RARTGSGKTAAYLIPLLQKLLAEKKTNDGE 91 (569)
T ss_pred ccHHHhC------CCHHHHHHHHHhCcCCcchhhhcccchhhcCcceee-eeccCCCchHHHHHHHHHHHHHhhhccccc
Confidence 7899888 999999999999999999999999999999986666 89999999998655554431 1 1
Q ss_pred CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc-cEEEecCCC-----ccccCCCcEEEEChhHHHHHhhcCC--CCCce
Q 000621 196 AEQSIVCTQPRKIAAISLAQRVREESRGCYEDD-SVICYPSFS-----SAQHFDSKVIYMTDHCLLQHFMNDR--DLSRI 267 (1387)
Q Consensus 196 ~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~-~vg~~~~~~-----~~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l 267 (1387)
.+...++++|||+||+|++..+.++...|.... .+....... ......++|+|+||+.+++++..+. .+..+
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l 171 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSL 171 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhe
Confidence 234688999999999999999988765443211 111111111 1123468999999999999998887 78889
Q ss_pred eEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC--CHHHHHHHhccCCeee-eecccc----eeEEEEecCC
Q 000621 268 SCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA--DAHQLSKYFYDCGISH-VVGRNF----PVDVRYVPCA 340 (1387)
Q Consensus 268 ~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl--~~~~~~~~f~~~~v~~-i~gr~~----pv~~~~~~~~ 340 (1387)
+++|+|||| -.+.-++...+.+.....++..|.++||||+ |...+.+.|...|++. ...... .+..++..+.
T Consensus 172 ~~LVvDEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 172 SFLVVDEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred eeEEechhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 999999999 7788888888888888888999999999998 4566888887666552 222222 2334444432
Q ss_pred CCCCccchhhHHHHHHHHHHhhh-ccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceE
Q 000621 341 TAGTSAVASYVSDVVRMVGEVHT-TEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRK 418 (1387)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~i~~-~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~k 418 (1387)
. +++...+..+++ ..-.|++|||+|+.+.+.++--.|...|+..+.+.|.||..-|.-+++.| .|-.+
T Consensus 251 e----------~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd 320 (569)
T KOG0346|consen 251 E----------EDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD 320 (569)
T ss_pred c----------chhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee
Confidence 1 222222222221 23479999999999999999999999999999999999999999999999 89999
Q ss_pred EEEecch-----------------------------------hhcCCCCCCceEEEecCCCccccccCCCCcccceeccc
Q 000621 419 VIFATNV-----------------------------------AETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRV 463 (1387)
Q Consensus 419 VLVaT~i-----------------------------------ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~i 463 (1387)
||||||. ..||||+.+|..||||++|.+.
T Consensus 321 ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~---------------- 384 (569)
T KOG0346|consen 321 IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETV---------------- 384 (569)
T ss_pred EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCch----------------
Confidence 9999992 5799999999999999998765
Q ss_pred CHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 464 SQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 464 S~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
.+|+||+||++|.+ +|.+..|+.+.+.
T Consensus 385 --~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 385 --TSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred --HHHHHhccccccCCCCCceEEEecchHH
Confidence 89999999999997 9999999987643
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.1e-34 Score=350.80 Aligned_cols=308 Identities=19% Similarity=0.191 Sum_probs=219.2
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC
Q 000621 147 RLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYE 226 (1387)
Q Consensus 147 ~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~ 226 (1387)
.+++..|.+.|+++|..++.+++++ +++|||||||+++..+++.. ++.++|++|+++|+.|..+++.... .
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvl-v~apTGsGKTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~~~g--i-- 76 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCF-VVMPTGGGKSLCYQLPALCS----DGITLVISPLISLMEDQVLQLKASG--I-- 76 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEE-EEcCCCCcHhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHHHcC--C--
Confidence 3567788888999999988887654 47999999999754444432 4578899999999999988887542 1
Q ss_pred CccEEEecCCCc----------cccCCCcEEEEChhHHHHHh--hcCC-CCCceeEEEEcCccccccc-hhHHHHH--HH
Q 000621 227 DDSVICYPSFSS----------AQHFDSKVIYMTDHCLLQHF--MNDR-DLSRISCIIVDEAHERSLN-TDLLLAL--VK 290 (1387)
Q Consensus 227 ~~~vg~~~~~~~----------~~~~~~~Ivv~Tpg~Ll~~l--~~~~-~l~~l~~IIIDEaHer~~~-~d~l~~~--lk 290 (1387)
.+........ ......+|+|+||+++.... .... ...++++|||||||+.+-+ .+|...+ +.
T Consensus 77 --~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 77 --PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred --cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 1222111111 12235799999999875321 1111 4678999999999954332 2455544 33
Q ss_pred HHHhcccCccEEeecccCCHHHHH---HHhc-cCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccC
Q 000621 291 DLLCRRFDLRLVIMSATADAHQLS---KYFY-DCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEK 366 (1387)
Q Consensus 291 ~l~~~~~~~kiIlmSATl~~~~~~---~~f~-~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 366 (1387)
.+....++.+++++|||++..... +.+. ..+.+...+...| .++|..... ......+....+ ....+
T Consensus 155 ~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~-----~~~~~~~l~~~l---~~~~~ 225 (470)
T TIGR00614 155 SLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRK-----TPKILEDLLRFI---RKEFK 225 (470)
T ss_pred HHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeC-----CccHHHHHHHHH---HHhcC
Confidence 345556889999999999876543 3332 1222222221112 122221111 011122222222 22345
Q ss_pred CCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCc
Q 000621 367 EGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVK 445 (1387)
Q Consensus 367 ~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k 445 (1387)
+..+||||+++++++.+++.|...++.+..+||+|++++|..+++.| .|+.+|||||+++++|||+|+|++||++++|+
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 56779999999999999999999999999999999999999999999 89999999999999999999999999999877
Q ss_pred cccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 446 ESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 446 ~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
. .++|.||+|||||.| +|.|+.+|++.+.
T Consensus 306 s------------------~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 306 S------------------MESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred C------------------HHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 4 489999999999998 9999999998765
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2e-33 Score=354.98 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=224.8
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
+...+++.. +++..|.+.|++.|..++.++++++ ++|||||||+++..+++.. .+.++|++|+++|+.|..+.
T Consensus 12 ~~~~~l~~~--fG~~~~r~~Q~~ai~~il~g~dvlv-~apTGsGKTl~y~lpal~~----~g~tlVisPl~sL~~dqv~~ 84 (607)
T PRK11057 12 LAKQVLQET--FGYQQFRPGQQEIIDAVLSGRDCLV-VMPTGGGKSLCYQIPALVL----DGLTLVVSPLISLMKDQVDQ 84 (607)
T ss_pred HHHHHHHHH--cCCCCCCHHHHHHHHHHHcCCCEEE-EcCCCchHHHHHHHHHHHc----CCCEEEEecHHHHHHHHHHH
Confidence 445556644 5777888889999888887766655 6999999999754444432 35788999999999999888
Q ss_pred HHHHhcCCCCCccEEEecCCCc----------cccCCCcEEEEChhHHHHH-hhcCCCCCceeEEEEcCccccccch-hH
Q 000621 217 VREESRGCYEDDSVICYPSFSS----------AQHFDSKVIYMTDHCLLQH-FMNDRDLSRISCIIVDEAHERSLNT-DL 284 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~~~----------~~~~~~~Ivv~Tpg~Ll~~-l~~~~~l~~l~~IIIDEaHer~~~~-d~ 284 (1387)
+.... ..+.+...... ......+++|+||++|... +.......++++|||||||+.+-+. +|
T Consensus 85 l~~~g------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 85 LLANG------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHcC------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 87642 11222111111 1223578999999998732 2222234578999999999654432 45
Q ss_pred HHHH--HHHHHhcccCccEEeecccCCHHHHH---HHhc-cCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHH
Q 000621 285 LLAL--VKDLLCRRFDLRLVIMSATADAHQLS---KYFY-DCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMV 358 (1387)
Q Consensus 285 l~~~--lk~l~~~~~~~kiIlmSATl~~~~~~---~~f~-~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (1387)
...+ +..+....++.+++++|||++..... ..+. ..+.+.+.+...| .+.|..... .. ....+
T Consensus 159 r~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~------~~----~~~~l 227 (607)
T PRK11057 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEK------FK----PLDQL 227 (607)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeec------cc----hHHHH
Confidence 5443 44455566889999999999865433 2221 2233333222222 122211110 01 11223
Q ss_pred HHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceE
Q 000621 359 GEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKF 437 (1387)
Q Consensus 359 ~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~ 437 (1387)
..+.....++++||||+++++++.+++.|+..++.+.++||+|++++|.++++.| .|+.+|||||+++++|||+|+|++
T Consensus 228 ~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 3333445678999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred EEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 438 VIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 438 VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
||++++|+ |.++|.||+|||||.| +|.|+.+|+..+..
T Consensus 308 VI~~d~P~------------------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 308 VVHFDIPR------------------NIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred EEEeCCCC------------------CHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 99999876 4499999999999998 99999999987753
No 50
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.8e-33 Score=318.26 Aligned_cols=430 Identities=18% Similarity=0.184 Sum_probs=309.8
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
+++....-++..|..--++.|..++-.-|..+++.+|+++|+||||+..-..=+......+++.++++|.-+||.|-++.
T Consensus 201 ipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~d 280 (830)
T COG1202 201 IPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYED 280 (830)
T ss_pred CcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHH
Confidence 66777777777777766777999999999888888889999999998643322223334478999999999999999999
Q ss_pred HHHHhcCCCCCc--cEEEec---CCC---ccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccc---hhHH
Q 000621 217 VREESRGCYEDD--SVICYP---SFS---SAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLN---TDLL 285 (1387)
Q Consensus 217 v~~~~~~~~~~~--~vg~~~---~~~---~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~---~d~l 285 (1387)
+.+......... .||... +.+ ...+.+++|+|+|.+-+-..|.....+.+++.|||||+| ..-+ ..-+
T Consensus 281 F~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH-tL~deERG~RL 359 (830)
T COG1202 281 FKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH-TLEDEERGPRL 359 (830)
T ss_pred HHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee-eccchhcccch
Confidence 998764332221 223211 111 223467899999999888788777899999999999999 2222 1235
Q ss_pred HHHHHHHHhcccCccEEeecccC-CHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhh--
Q 000621 286 LALVKDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVH-- 362 (1387)
Q Consensus 286 ~~~lk~l~~~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-- 362 (1387)
.+++.++....++.|+|.+|||. |++.+++.++ ...+....|..|++.+..-... -.++.+.+..+.
T Consensus 360 dGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~---------e~eK~~ii~~L~k~ 429 (830)
T COG1202 360 DGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARN---------ESEKWDIIARLVKR 429 (830)
T ss_pred hhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecC---------chHHHHHHHHHHHH
Confidence 56677777788999999999996 8999999985 5667777787787766554421 122222232222
Q ss_pred ------hccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCc
Q 000621 363 ------TTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGV 435 (1387)
Q Consensus 363 ------~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V 435 (1387)
+..-.|++|||++|+..|+.++..|...|+.+.|||++|+..+|..+...| .+...++|+|.+++.|+|+|.-
T Consensus 430 E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 430 EFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred HHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchH
Confidence 223469999999999999999999999999999999999999999999999 8999999999999999999977
Q ss_pred eEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeecccc-ccc-CCC------------C
Q 000621 436 KFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSD-FET-RPL------------N 498 (1387)
Q Consensus 436 ~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~-~~~-~~~------------~ 498 (1387)
.+|..+= .+...|.|..+|.||.|||||.+ .|++|.|..+.. |.. |.. .
T Consensus 510 QVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~ 575 (830)
T COG1202 510 QVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESE 575 (830)
T ss_pred HHHHHHH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCC
Confidence 6665431 23456999999999999999986 899999987643 222 211 1
Q ss_pred CCcchhcc----chHHHHHHHHHcCCC-------CCCCccccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhh
Q 000621 499 QEPEIHRV----HLGIAVLRILALGIR-------DVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLV 567 (1387)
Q Consensus 499 ~~pEi~r~----~L~~~~L~l~~lgi~-------~~~~f~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~ 567 (1387)
+.|-+..- .+++ +|. ..|+. .+... .+-+ .-....++..|..+|+|+.+|+...+|+.|+.++
T Consensus 576 ~e~V~vey~ee~e~e~-vLA--~~~v~~s~~~i~~v~~~-~~g~--~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava 649 (830)
T COG1202 576 PEPVIVEYDEEDEEEN-VLA--SAGVTNSLSVIERVNSL-MLGA--AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVA 649 (830)
T ss_pred CCcceeccCcHHHHHH-HHH--HhhhcCcHHHHhhcChh-hccc--cCCHHHHHHHHHhcCCeeccCCEeeeccccceeE
Confidence 11111110 1122 222 22221 11111 1111 1224688999999999998887789999999999
Q ss_pred hcCCChhhHHHHHHHhhhcchHHHHHHhHHhc
Q 000621 568 KLGIEPRLGKLILSCFRRRLGREGLVLAAVMA 599 (1387)
Q Consensus 568 ~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~ 599 (1387)
..-+.|.-+..|..++.-+ ..-+-|++.+.
T Consensus 650 ~~Fl~p~~a~~Ir~~v~~~--~~pl~i~~~l~ 679 (830)
T COG1202 650 MSFLGPSEAEFIREGVLAS--MDPLRIAAELE 679 (830)
T ss_pred EeecCchHHHHHHHhhhcc--CChHhHhhccc
Confidence 9999999999998886322 12355555553
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=8.1e-33 Score=356.61 Aligned_cols=380 Identities=16% Similarity=0.120 Sum_probs=261.2
Q ss_pred CCCccccccccCCccCCCC-hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHhcccCchhhhhhhhH
Q 000621 10 NGAHCLNLKLIPHVVVPSD-ADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNE 88 (1387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ei~~l~~~~~~~~~~~~~~~~~~ 88 (1387)
.|..+|.|.-..+.+-.=. .+.-.+++.++... -+.+.++|+++.+.+++.++.++.+++... ..
T Consensus 366 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~-----~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~--~~------- 431 (926)
T TIGR00580 366 GEDKLYVPVEQLHLISRYVGGSGKNPALDKLGGK-----SWEKTKAKVKKSVREIAAKLIELYAKRKAI--KG------- 431 (926)
T ss_pred CCCEEEEEHHHcCceeeecCCCCCCCcccccCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-------
Confidence 4566777754433221000 01124455555544 455888899999999999999988884433 00
Q ss_pred hhhhhhccchhhHhhhhcCCCccccccccccCccccccccccCCccccccHHHHHHHHH-hccCCCcHHHHHHHHHHHhc
Q 000621 89 RKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKR-LEDGLPIYMYRQDILRRIYG 167 (1387)
Q Consensus 89 ~kk~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~-~~~~lP~~~q~~~i~~~l~~ 167 (1387)
.+|. ......+.+.+ +++ .|+..|+.+|..++.+
T Consensus 432 -----------------------------------~~~~---------~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d 466 (926)
T TIGR00580 432 -----------------------------------HAFP---------PDLEWQQEFEDSFPF-EETPDQLKAIEEIKAD 466 (926)
T ss_pred -----------------------------------CCCC---------CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhh
Confidence 0111 11122333333 345 4899999999998875
Q ss_pred -----CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc---
Q 000621 168 -----EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA--- 239 (1387)
Q Consensus 168 -----~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~--- 239 (1387)
....+++|+||||||.++...++... ..+.++++++||++||.|+++.+.+.+.... ..++...++...
T Consensus 467 ~~~~~~~d~Ll~adTGsGKT~val~a~l~al-~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~--i~v~~Lsg~~~~~e~ 543 (926)
T TIGR00580 467 MESPRPMDRLVCGDVGFGKTEVAMRAAFKAV-LDGKQVAVLVPTTLLAQQHFETFKERFANFP--VTIELLSRFRSAKEQ 543 (926)
T ss_pred hcccCcCCEEEECCCCccHHHHHHHHHHHHH-HhCCeEEEEeCcHHHHHHHHHHHHHHhccCC--cEEEEEeccccHHHH
Confidence 24567799999999998766665542 3357899999999999999999999875432 233333332211
Q ss_pred -------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHH
Q 000621 240 -------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ 312 (1387)
Q Consensus 240 -------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~ 312 (1387)
....++|+|+||..+ ..+..+.++++|||||+| |. .......+...+++.++++||||+.+..
T Consensus 544 ~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEah-rf-----gv~~~~~L~~~~~~~~vL~~SATpiprt 613 (926)
T TIGR00580 544 NEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQ-RF-----GVKQKEKLKELRTSVDVLTLSATPIPRT 613 (926)
T ss_pred HHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeeccc-cc-----chhHHHHHHhcCCCCCEEEEecCCCHHH
Confidence 122579999999533 344478899999999999 42 2223344445567899999999998877
Q ss_pred HHHHhcc---CCeeeee-cccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhc
Q 000621 313 LSKYFYD---CGISHVV-GRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFD 388 (1387)
Q Consensus 313 ~~~~f~~---~~v~~i~-gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~ 388 (1387)
+...+.+ ..++..+ ....|+..++.+.. . ..+...+.... ..+++++||||++++++.+++.|+
T Consensus 614 l~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-------~---~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~ 681 (926)
T TIGR00580 614 LHMSMSGIRDLSIIATPPEDRLPVRTFVMEYD-------P---ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLR 681 (926)
T ss_pred HHHHHhcCCCcEEEecCCCCccceEEEEEecC-------H---HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHH
Confidence 6644322 1222221 22345655554321 0 11122222211 357899999999999999999998
Q ss_pred C--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 389 A--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 389 ~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
. +++.+..+||+|++++|.++++.| +|+.+|||||+++++|||+|++++||..+.++- +.
T Consensus 682 ~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~-----------------gl 744 (926)
T TIGR00580 682 ELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKF-----------------GL 744 (926)
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCC-----------------CH
Confidence 7 478999999999999999999999 999999999999999999999999997655431 23
Q ss_pred hhHHHHhcccCCCC-CCeEEEeeccc
Q 000621 466 SSANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 466 a~~~QR~GRaGR~~-~G~~~~L~s~~ 490 (1387)
++|.||+||+||.+ .|.||.+++..
T Consensus 745 s~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 745 AQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 67899999999998 99999999765
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.9e-32 Score=357.34 Aligned_cols=381 Identities=18% Similarity=0.174 Sum_probs=252.9
Q ss_pred CCCccccccccCCccCCC-ChhHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHhHHHHHHHHHHHhcccCchhhhhhhhH
Q 000621 10 NGAHCLNLKLIPHVVVPS-DADELEERLRNLFVDHVKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNE 88 (1387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ei~~l~~~~~~~~~~~~~~~~~~ 88 (1387)
.|..+|.|.-.-+.+-.= -.+.-.+++.++... -+.+.++|+++.+.+++.++.++++++... ..
T Consensus 515 ~~~~l~vPv~~~~~~~~y~~~~~~~~~l~~lg~~-----~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~--~~------- 580 (1147)
T PRK10689 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD-----AWSRARQKAAEKVRDVAAELLDIYAQRAAK--EG------- 580 (1147)
T ss_pred CCCeEEeeHHHhCcEeeecCCCCCCCccccCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cC-------
Confidence 346777775432221000 001123555555544 445788899999999999999988884333 00
Q ss_pred hhhhhhccchhhHhhhhcCCCccccccccccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhc-
Q 000621 89 RKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYG- 167 (1387)
Q Consensus 89 ~kk~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~- 167 (1387)
.+|. .-..+..+...++.+ .|+..|+++|..++.+
T Consensus 581 -----------------------------------~~~~--------~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~ 616 (1147)
T PRK10689 581 -----------------------------------FAFK--------HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDM 616 (1147)
T ss_pred -----------------------------------CCCC--------CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHh
Confidence 0011 011112223344444 6899999999998876
Q ss_pred ----CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc----
Q 000621 168 ----EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA---- 239 (1387)
Q Consensus 168 ----~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~---- 239 (1387)
...++++|+||||||.++...+... ...+.+++|++||++||.|+++.+.+.+.... ..+....++...
T Consensus 617 ~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~--v~i~~l~g~~s~~e~~ 693 (1147)
T PRK10689 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWP--VRIEMLSRFRSAKEQT 693 (1147)
T ss_pred hcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCC--ceEEEEECCCCHHHHH
Confidence 2456778999999998765444332 23467899999999999999999998764432 233333332211
Q ss_pred ------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHH
Q 000621 240 ------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQL 313 (1387)
Q Consensus 240 ------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~ 313 (1387)
.....+|+|+||+.+. .+..+.++++|||||+| +. . ......+...+++.++++||||+.+..+
T Consensus 694 ~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEah-rf-G----~~~~e~lk~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 694 QILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEH-RF-G----VRHKERIKAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred HHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechh-hc-c----hhHHHHHHhcCCCCcEEEEcCCCCHHHH
Confidence 1135799999997542 33467899999999999 43 1 1223344556778999999999887765
Q ss_pred HHHh---ccCCeeeeec-ccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC
Q 000621 314 SKYF---YDCGISHVVG-RNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA 389 (1387)
Q Consensus 314 ~~~f---~~~~v~~i~g-r~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~ 389 (1387)
.... .+..++..+. ...++..++..... .......+.++ ..+|+++||||+++.++.+++.|.+
T Consensus 764 ~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~---------~~~k~~il~el---~r~gqv~vf~n~i~~ie~la~~L~~ 831 (1147)
T PRK10689 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDS---------LVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAE 831 (1147)
T ss_pred HHHHhhCCCcEEEecCCCCCCCceEEEEecCc---------HHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHH
Confidence 4222 2222333221 12344433322110 01111222222 2468999999999999999999986
Q ss_pred C--CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHh
Q 000621 390 P--SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQS 466 (1387)
Q Consensus 390 ~--~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a 466 (1387)
. +..+..+||+|++++|.+++..| +|+.+|||||+++++|||+|+|++||..... .| +.+
T Consensus 832 ~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad---~f--------------gla 894 (1147)
T PRK10689 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD---HF--------------GLA 894 (1147)
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC---CC--------------CHH
Confidence 4 78899999999999999999999 8999999999999999999999999932110 11 126
Q ss_pred hHHHHhcccCCCC-CCeEEEeeccc
Q 000621 467 SANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 467 ~~~QR~GRaGR~~-~G~~~~L~s~~ 490 (1387)
+|.||+||+||.+ .|.||.+++..
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeCCC
Confidence 7899999999998 99999988653
No 53
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=7.6e-33 Score=320.47 Aligned_cols=342 Identities=15% Similarity=0.160 Sum_probs=267.0
Q ss_pred cccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc--ccCCCe
Q 000621 122 DVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG--IAAEQS 199 (1387)
Q Consensus 122 ~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~--~~~~~~ 199 (1387)
....|+++. +...++..+++.++.+|+.+|..+|+.++.+-|.++ +|..|+|||+.+..+.++.. ......
T Consensus 23 ~~~~fe~l~------l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliV-QaKSGTGKTlVfsv~av~sl~~~~~~~q 95 (980)
T KOG4284|consen 23 CTPGFEQLA------LWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIV-QAKSGTGKTLVFSVLAVESLDSRSSHIQ 95 (980)
T ss_pred CCCCHHHHH------HHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEE-EecCCCCceEEEEeeeehhcCcccCcce
Confidence 345566554 888999999999999999999999998887666554 99999999987544444432 223457
Q ss_pred EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC----CCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcC
Q 000621 200 IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS----FSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDE 274 (1387)
Q Consensus 200 Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~----~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDE 274 (1387)
+++++|||++|.|+.+.+........+...-.+.++ .+...-..++|+|+|||++..++..+. ..++++++|+||
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDE 175 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEecc
Confidence 889999999999999999987643222211122121 222233579999999999999987776 899999999999
Q ss_pred ccccccch-hHHHHHHHHHHhcccCccEEeecccCCH---HHHHHHhccCCeeeeeccc---ceeEEEEecCCCCCCccc
Q 000621 275 AHERSLNT-DLLLALVKDLLCRRFDLRLVIMSATADA---HQLSKYFYDCGISHVVGRN---FPVDVRYVPCATAGTSAV 347 (1387)
Q Consensus 275 aHer~~~~-d~l~~~lk~l~~~~~~~kiIlmSATl~~---~~~~~~f~~~~v~~i~gr~---~pv~~~~~~~~~~~~~~~ 347 (1387)
|| ..+++ .|...+-.++..++...|++.+|||.+. +.+++|+.++..+....+. +-++.+|...+. ....
T Consensus 176 AD-kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s--~nns 252 (980)
T KOG4284|consen 176 AD-KLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCS--PNNS 252 (980)
T ss_pred HH-hhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccC--Ccch
Confidence 99 67775 4556666666678888999999999863 4578888766555554332 334445544332 1222
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchh
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVA 426 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ia 426 (1387)
......+++.+.++++.-+-.+.||||+....|+-++..|...|+.+.++.|.|++.+|..+++.+ .-..+|||+|++.
T Consensus 253 veemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLt 332 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLT 332 (980)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchh
Confidence 344566778888888888889999999999999999999999999999999999999999999998 6678999999999
Q ss_pred hcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 427 ETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 427 e~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
+||||-|+|+.|||.+.|.+- ..|.||+|||||.| .|.+++|+-.+.
T Consensus 333 aRGIDa~~vNLVVNiD~p~d~------------------eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 333 ARGIDADNVNLVVNIDAPADE------------------ETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred hccCCccccceEEecCCCcch------------------HHHHHHhhhcccccccceeEEEeccch
Confidence 999999999999998876644 88999999999999 899999886543
No 54
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.8e-32 Score=344.35 Aligned_cols=306 Identities=22% Similarity=0.192 Sum_probs=219.1
Q ss_pred hccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCC
Q 000621 148 LEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYED 227 (1387)
Q Consensus 148 ~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~ 227 (1387)
+|+.-+.+.|++.|..++.++++ ++++|||+|||+++..+++.. .+.++|+.|+++|+.+..+.+....
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dv-lv~~PTG~GKTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~~g------ 77 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDV-LVVMPTGGGKSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRAAG------ 77 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCE-EEEcCCCccHhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHcC------
Confidence 56677777888888888877765 557999999999855444432 3567888999999999988887642
Q ss_pred ccEEEecCCCc----------cccCCCcEEEEChhHHHHHh-hcCCCCCceeEEEEcCccccccc-hhHHHHHH--HHHH
Q 000621 228 DSVICYPSFSS----------AQHFDSKVIYMTDHCLLQHF-MNDRDLSRISCIIVDEAHERSLN-TDLLLALV--KDLL 293 (1387)
Q Consensus 228 ~~vg~~~~~~~----------~~~~~~~Ivv~Tpg~Ll~~l-~~~~~l~~l~~IIIDEaHer~~~-~d~l~~~l--k~l~ 293 (1387)
..+.+...... ......+|+|+||++|.... .......++++|||||||+.+.+ .||...+. ..+.
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 12332221111 11235799999999986422 22224568999999999965543 35655553 3334
Q ss_pred hcccCccEEeecccCCHHHHH---HHhcc-CCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCc
Q 000621 294 CRRFDLRLVIMSATADAHQLS---KYFYD-CGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGT 369 (1387)
Q Consensus 294 ~~~~~~kiIlmSATl~~~~~~---~~f~~-~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~ 369 (1387)
...++.+++++|||++..... .++.- .+...+.+. ....+.|..... . .....+..++....+++
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~------~----~~~~~l~~~l~~~~~~~ 226 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKK------N----NKQKFLLDYLKKHRGQS 226 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeC------C----CHHHHHHHHHHhcCCCC
Confidence 445677799999998876543 34321 122222211 111222221111 0 11222333333345788
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCcccc
Q 000621 370 ILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESY 448 (1387)
Q Consensus 370 iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~ 448 (1387)
+||||+++++++.+++.|...++.+.++||+|+.++|..+++.| .|+.+|||||+++++|||+|+|++||++++|+.
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s-- 304 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN-- 304 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC--
Confidence 99999999999999999999999999999999999999999999 899999999999999999999999999998764
Q ss_pred ccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 449 FEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 449 yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
.++|.||+|||||.| +|.|+.+|+..+..
T Consensus 305 ----------------~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 305 ----------------LESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred ----------------HHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 489999999999998 99999999988764
No 55
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-32 Score=309.42 Aligned_cols=329 Identities=18% Similarity=0.189 Sum_probs=229.7
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhc--------CCeEEEEcCCCCcHHHHHHHHHHHcccc---CCCeEEEeccHHH
Q 000621 140 FIVRECKRLEDGLPIYMYRQDILRRIYG--------EQILVLIGETGCGKSTQLVQFLADSGIA---AEQSIVCTQPRKI 208 (1387)
Q Consensus 140 ~ll~~l~~~~~~lP~~~q~~~i~~~l~~--------~~vviI~a~TGSGKTt~i~~~ll~~~~~---~~~~Ilv~~P~r~ 208 (1387)
.+.+.+.++....-.+.|...++..+.. .+.++|.||||||||+++...+...... ..-+.+|++|+|+
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~ 226 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRE 226 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHH
Confidence 3455577777776666677766666532 3467779999999999844444433211 1237899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccEEEecCCCccc-------cC----CCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCc
Q 000621 209 AAISLAQRVREESRGCYEDDSVICYPSFSSAQ-------HF----DSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEA 275 (1387)
Q Consensus 209 LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~-------~~----~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEa 275 (1387)
||.|+++.+.+++.+... .|+...+..+.. +. ..+|+|+|||+|.+++.+.+ .|++++++|||||
T Consensus 227 L~~QV~~~f~~~~~~tgL--~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGL--AVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHHHHhccCCce--EEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechH
Confidence 999999999999755433 354443332211 11 34999999999999998765 8999999999999
Q ss_pred cccccchhHH---HHHHHHH------------Hh-------------------cccCccEEeecccC--CHHHHHHHhcc
Q 000621 276 HERSLNTDLL---LALVKDL------------LC-------------------RRFDLRLVIMSATA--DAHQLSKYFYD 319 (1387)
Q Consensus 276 Her~~~~d~l---~~~lk~l------------~~-------------------~~~~~kiIlmSATl--~~~~~~~~f~~ 319 (1387)
| |+++..|. ..++..+ .. ..+.+.-+++|||+ ++..+.++-.+
T Consensus 305 D-Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 305 D-RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred H-HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 9 88876432 1111111 11 12344567888886 67777766544
Q ss_pred CC-eeeeecccceeEEEEe-cCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhc----CCCCc
Q 000621 320 CG-ISHVVGRNFPVDVRYV-PCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFD----APSAV 393 (1387)
Q Consensus 320 ~~-v~~i~gr~~pv~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~----~~~~~ 393 (1387)
.| ++.+.+. .-..|. |..........+ .....-.+..+....+..++|+|+++.+.+.+++..|. ..+..
T Consensus 384 ~Prl~~v~~~---~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 384 IPRLFHVSKP---LIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred CCceEEeecc---cceeeecChhhhhceeecc-cccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 44 3333321 112222 211111100000 11112233444455677899999999999999998876 56677
Q ss_pred eEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHh
Q 000621 394 ALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRA 472 (1387)
Q Consensus 394 v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~ 472 (1387)
+-.+.|++....|.+.++.| .|.+.||||||+++||||+.+|+.||+|++|. |-.+|+||+
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~ 521 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRA 521 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhh
Confidence 78899999999999999999 89999999999999999999999999988765 448899999
Q ss_pred cccCCCC-CCeEEEeecccccc
Q 000621 473 GRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 473 GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
||+||+| .|.||.+.+..+..
T Consensus 522 GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 522 GRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred cccccccCCceEEEeeccccch
Confidence 9999999 99999999987543
No 56
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=339.95 Aligned_cols=341 Identities=16% Similarity=0.244 Sum_probs=268.6
Q ss_pred ccccCccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc--
Q 000621 116 SYDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG-- 193 (1387)
Q Consensus 116 ~~~~~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~-- 193 (1387)
..+.+.++.+|..+| ++..++..++++++..|+++|.++|+.++.+++++.+ |.||||||.++.++++.+.
T Consensus 357 g~~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgv-akTgSGKT~af~LPmirhi~d 429 (997)
T KOG0334|consen 357 GKECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGV-AKTGSGKTLAFLLPMIRHIKD 429 (997)
T ss_pred cCCCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEe-eccCCccchhhhcchhhhhhc
Confidence 445778889999888 9999999999999999999999999999999988885 8999999998755554431
Q ss_pred -----ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcCC-
Q 000621 194 -----IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMNDR- 262 (1387)
Q Consensus 194 -----~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~- 262 (1387)
.+.+...++++|||+||.|+.+.+..+...... ..+..+.+.... ...++.|+|||||++++.+..+.
T Consensus 430 Qr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~i-r~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~g 508 (997)
T KOG0334|consen 430 QRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGI-RVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSG 508 (997)
T ss_pred CCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCc-eEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCC
Confidence 223557889999999999999999998754222 122223322221 23469999999999999885443
Q ss_pred ---CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeec-cc---ceeE
Q 000621 263 ---DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVG-RN---FPVD 333 (1387)
Q Consensus 263 ---~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~g-r~---~pv~ 333 (1387)
.+.++.++|+|||| |+++..|.+...+++...+++.|++++|||.+.. .++.-....|+-.+.| +. -.|+
T Consensus 509 rvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 509 RVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVT 587 (997)
T ss_pred ccccccccceeeechhh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccce
Confidence 56677799999999 9999999999999888899999999999998754 3554444456543333 21 1122
Q ss_pred EEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC
Q 000621 334 VRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY 413 (1387)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f 413 (1387)
..+.... ...+...+++.-+......+++||||..+..|..+.+.|.+.++.+..+||+.++.+|..+++.|
T Consensus 588 q~v~V~~--------~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 588 QVVRVCA--------IENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred EEEEEec--------CchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHH
Confidence 2222221 11222333333333345689999999999999999999999999999999999999999999999
Q ss_pred -CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 414 -PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 414 -~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
++..++||||+++++|+|++++..||+|++|... +.|+||+|||||+| .|.||.|.++++
T Consensus 660 K~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~------------------edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 660 KNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY------------------EDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred hccCceEEEehhhhhcccccccceEEEEcccchhH------------------HHHHHHhcccccCCccceeEEEeChHH
Confidence 8999999999999999999999999999998743 78999999999998 899999999854
No 57
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-32 Score=304.37 Aligned_cols=334 Identities=16% Similarity=0.233 Sum_probs=262.4
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeE
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSI 200 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~I 200 (1387)
+.+|++++ |.+.+|+.+++.|+..|..+||.+|+..+.+.++.+ .+++|+|||.+....++...- .....+
T Consensus 25 vdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~-qaqsgTgKt~af~i~iLq~iD~~~ke~qa 97 (397)
T KOG0327|consen 25 VDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIA-QAQSGTGKTAAFLISILQQIDMSVKETQA 97 (397)
T ss_pred hhhhhhcC------CCHHHHhHHHhhccCCchHHHhccccccccCCceeE-eeeccccchhhhHHHHHhhcCcchHHHHH
Confidence 34889888 999999999999999999999999999999877776 899999999986555554421 224578
Q ss_pred EEeccHHHHHHHHHHHHHHHhcCC--CCCccEEEecCC--Cc-cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcC
Q 000621 201 VCTQPRKIAAISLAQRVREESRGC--YEDDSVICYPSF--SS-AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDE 274 (1387)
Q Consensus 201 lv~~P~r~LA~qla~rv~~~~~~~--~~~~~vg~~~~~--~~-~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDE 274 (1387)
+++.|+|+||.|+.+.+..+.... .....+|+.... .. .....++|+++|||+++.++.... ....+.++|+||
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999997776664221 111112221111 11 122357999999999999997665 556699999999
Q ss_pred ccccccchhHHHHHHHHHHhcccCccEEeecccCCHHH--HHHHhccCCeeeeeccc----ceeEEEEecCCCCCCccch
Q 000621 275 AHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ--LSKYFYDCGISHVVGRN----FPVDVRYVPCATAGTSAVA 348 (1387)
Q Consensus 275 aHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~--~~~~f~~~~v~~i~gr~----~pv~~~~~~~~~~~~~~~~ 348 (1387)
|+| ++.-+|...+.......+++.|++++|||++.+. +.+-|...|+.....+. .-+..+|.....
T Consensus 178 aDE-mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k------- 249 (397)
T KOG0327|consen 178 ADE-MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEK------- 249 (397)
T ss_pred hHh-hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccc-------
Confidence 994 7777898888888888999999999999998765 44555544443332221 112222222211
Q ss_pred hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhh
Q 000621 349 SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAE 427 (1387)
Q Consensus 349 ~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae 427 (1387)
++++..+..++. .-.+.+|||||++.+..+...|...++.+..+||.|.+.+|..++..| .|..+|||.|+.++
T Consensus 250 ---~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 250 ---EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred ---cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 225666666665 668899999999999999999999999999999999999999999999 89999999999999
Q ss_pred cCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccccc
Q 000621 428 TSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFET 494 (1387)
Q Consensus 428 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~~ 494 (1387)
+|+|+-.+..||++++|... ++|+||+||+||.| +|.++.+++.++...
T Consensus 325 rgidv~~~slvinydlP~~~------------------~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARK------------------ENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred cccchhhcceeeeeccccch------------------hhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 99999999999999997654 89999999999998 999999999887654
No 58
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.2e-31 Score=347.40 Aligned_cols=319 Identities=18% Similarity=0.172 Sum_probs=215.2
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--------cCCCeEEEeccHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--------AAEQSIVCTQPRKI 208 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--------~~~~~Ilv~~P~r~ 208 (1387)
+++.+.+. .+.++..|++.|++++..++.++ +++++||||||||+++...+++... ..+.++++++|+|+
T Consensus 18 l~~~v~~~-~~~~~~~~tpiQ~~Ai~~il~g~-nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREW-FKEKFGTFTPPQRYAIPLIHEGK-NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHH-HHHccCCCCHHHHHHHHHHHcCC-CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 55555554 44477889999999998876655 5666899999999986666654321 22347999999999
Q ss_pred HHHHHHHHHHHHhc---------CCCC-CccEEEecCCCcc------ccCCCcEEEEChhHHHHHhhcCC---CCCceeE
Q 000621 209 AAISLAQRVREESR---------GCYE-DDSVICYPSFSSA------QHFDSKVIYMTDHCLLQHFMNDR---DLSRISC 269 (1387)
Q Consensus 209 LA~qla~rv~~~~~---------~~~~-~~~vg~~~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~---~l~~l~~ 269 (1387)
||.|+++++.+... +... +..++...+.... ....++|+|+|||+|..++.+.. .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999887653210 1111 2233333322211 12357999999999976664432 5789999
Q ss_pred EEEcCccccccchh---HHHHHHHHHHhcc-cCccEEeecccC-CHHHHHHHhccC-------Ceeeeecc-cceeEEEE
Q 000621 270 IIVDEAHERSLNTD---LLLALVKDLLCRR-FDLRLVIMSATA-DAHQLSKYFYDC-------GISHVVGR-NFPVDVRY 336 (1387)
Q Consensus 270 IIIDEaHer~~~~d---~l~~~lk~l~~~~-~~~kiIlmSATl-~~~~~~~~f~~~-------~v~~i~gr-~~pv~~~~ 336 (1387)
||||||| ...+.. .+...+..+.... ++.++|++|||+ +.+.+++|+.+. ++..+.+. ..+..+..
T Consensus 176 VVIDE~H-~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v 254 (876)
T PRK13767 176 VIVDEIH-SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKV 254 (876)
T ss_pred EEEechh-hhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEE
Confidence 9999999 444432 2222344444333 678999999998 457788887542 11222111 11111111
Q ss_pred e-cCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC------CCCceEeccCCCCHhhhhhh
Q 000621 337 V-PCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA------PSAVALPFHGQLSFDEQFCV 409 (1387)
Q Consensus 337 ~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~------~~~~v~~lh~~l~~~er~~v 409 (1387)
. +...................+..+. ...+++||||+|+..++.++..|.. .+..+..+||+|++++|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 1 1000000000111223334444433 2467899999999999999999875 24679999999999999999
Q ss_pred hccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCC
Q 000621 410 FKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRT 478 (1387)
Q Consensus 410 ~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~ 478 (1387)
++.| +|+.+|||||+++++|||+|+|++||++|.|+ |.++|+||+|||||.
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~------------------sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK------------------SVSRLLQRIGRAGHR 384 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC------------------CHHHHHHhcccCCCC
Confidence 9999 89999999999999999999999999988865 449999999999986
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.98 E-value=6e-31 Score=332.98 Aligned_cols=413 Identities=19% Similarity=0.225 Sum_probs=281.3
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
...||.++...+.++.+++|++|||||||+.+...++......++++++++|+|+||.+.++.++.+- ..|..|+..
T Consensus 33 ~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~---~~GirV~~~ 109 (766)
T COG1204 33 FNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE---ELGIRVGIS 109 (766)
T ss_pred hHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHH---hcCCEEEEe
Confidence 44688888888888899999999999999987777776544446799999999999999999999321 123455554
Q ss_pred cCCCcc---ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccc---hhHHHHHHHHHHhcccCccEEeecc
Q 000621 234 PSFSSA---QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLN---TDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 234 ~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~---~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
.+.... .-.+++|+|+||+.+-..+.+.+ ++..+++|||||+|- ..+ .-.+..+..+.....+..|++++||
T Consensus 110 TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~-l~d~~RG~~lE~iv~r~~~~~~~~rivgLSA 188 (766)
T COG1204 110 TGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL-LGDRTRGPVLESIVARMRRLNELIRIVGLSA 188 (766)
T ss_pred cCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee-cCCcccCceehhHHHHHHhhCcceEEEEEee
Confidence 443332 23579999999999988887776 788999999999992 222 1345555666666667799999999
Q ss_pred cC-CHHHHHHHhccCCeeeeecccceeEEE---------EecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCC
Q 000621 307 TA-DAHQLSKYFYDCGISHVVGRNFPVDVR---------YVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTS 376 (1387)
Q Consensus 307 Tl-~~~~~~~~f~~~~v~~i~gr~~pv~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s 376 (1387)
|+ +...+++|++..++ .+..+|+..+ +..... ...............+...+ ..++++||||++
T Consensus 189 TlpN~~evA~wL~a~~~---~~~~rp~~l~~~v~~~~~~~~~~~~-~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~s 262 (766)
T COG1204 189 TLPNAEEVADWLNAKLV---ESDWRPVPLRRGVPYVGAFLGADGK-KKTWPLLIDNLALELVLESL--AEGGQVLVFVHS 262 (766)
T ss_pred ecCCHHHHHHHhCCccc---ccCCCCcccccCCccceEEEEecCc-cccccccchHHHHHHHHHHH--hcCCeEEEEEec
Confidence 96 78999999975443 2222232211 111100 00000111122333333333 678999999999
Q ss_pred HHHHHHHHHHhcC---------------------C----------------CCceEeccCCCCHhhhhhhhccC-CCceE
Q 000621 377 KMEVEWACEKFDA---------------------P----------------SAVALPFHGQLSFDEQFCVFKSY-PGRRK 418 (1387)
Q Consensus 377 ~~eie~l~~~L~~---------------------~----------------~~~v~~lh~~l~~~er~~v~~~f-~g~~k 418 (1387)
+..+...+..|+. . ...+..+|++|+.++|..+.+.| .|+++
T Consensus 263 R~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik 342 (766)
T COG1204 263 RKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK 342 (766)
T ss_pred CchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce
Confidence 9999998888761 0 01367899999999999999999 89999
Q ss_pred EEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEee-cccccc-
Q 000621 419 VIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLY-SKSDFE- 493 (1387)
Q Consensus 419 VLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~-s~~~~~- 493 (1387)
||+||++++.|+|.|.-++||-. ...|||..| ..+++.-++.|+.|||||.| -|..+.+. +.++.+
T Consensus 343 Vlv~TpTLA~GVNLPA~~VIIk~----~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 343 VLVSTPTLAAGVNLPARTVIIKD----TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred EEEechHHhhhcCCcceEEEEee----eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhH
Confidence 99999999999999977777732 346777444 35678999999999999997 45555554 332222
Q ss_pred --cCCCCCCcchhccchH------HHHHHHHHcCCC----CCCCc---cccC------CCcHHHHHHHHHHHHHcC-cee
Q 000621 494 --TRPLNQEPEIHRVHLG------IAVLRILALGIR----DVQGF---DFID------APSAKAIEMAIRNLVQLG-AIK 551 (1387)
Q Consensus 494 --~~~~~~~pEi~r~~L~------~~~L~l~~lgi~----~~~~f---~~ld------~P~~~~l~~al~~L~~lg-al~ 551 (1387)
.......||...+.|. ..++.+.+.|-. ....| -|.. --....+..+++.|.+.+ .++
T Consensus 414 ~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~ 493 (766)
T COG1204 414 LAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILD 493 (766)
T ss_pred HHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceee
Confidence 2333444444222111 111111111100 00000 0011 124566788999999886 777
Q ss_pred ccCCccccCHHHHHhhhcCCChhhHHHHHHHhhh
Q 000621 552 LNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR 585 (1387)
Q Consensus 552 ~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~ 585 (1387)
.....+..|++|+.++++.++|..++.+......
T Consensus 494 ~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~ 527 (766)
T COG1204 494 ADWEALHATELGKLVSRLYIDPESAKIFRDLLAE 527 (766)
T ss_pred ccccccchhHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 7777889999999999999999999998877654
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=2.3e-30 Score=324.48 Aligned_cols=341 Identities=17% Similarity=0.144 Sum_probs=218.2
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQPRKIAAISLAQRVREESRGCYE 226 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~ 226 (1387)
|+. |++.|++.|..++.+++.+++.+|||||||.++..+++.... ....++++++|||+||.|+++.+.+.......
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 555 999999999999988878888899999999876555543211 11235666889999999999999887643210
Q ss_pred ---------------------CccEEE-ecCCCc-----cccCCCcEEEEChhHHHHHhhcC-------------CCCCc
Q 000621 227 ---------------------DDSVIC-YPSFSS-----AQHFDSKVIYMTDHCLLQHFMND-------------RDLSR 266 (1387)
Q Consensus 227 ---------------------~~~vg~-~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~-------------~~l~~ 266 (1387)
...+.. +.+... ....+++|+|+|+.++.+..... ..+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 011221 222111 12346799999977665544321 13688
Q ss_pred eeEEEEcCccccccchhHHHHHHHHHHhc--cc---CccEEeecccCCHH--HHHHHhccCCe-eeeecccce--eEEEE
Q 000621 267 ISCIIVDEAHERSLNTDLLLALVKDLLCR--RF---DLRLVIMSATADAH--QLSKYFYDCGI-SHVVGRNFP--VDVRY 336 (1387)
Q Consensus 267 l~~IIIDEaHer~~~~d~l~~~lk~l~~~--~~---~~kiIlmSATl~~~--~~~~~f~~~~v-~~i~gr~~p--v~~~~ 336 (1387)
++++|||||| +++.|...+..++... .+ ++|+++||||++.+ .+...+...+. +.+...... -...|
T Consensus 172 v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 172 DALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred ceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 9999999999 5667777666665532 22 36999999999753 33333432222 222111111 01122
Q ss_pred ecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhh-----hhhc
Q 000621 337 VPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQF-----CVFK 411 (1387)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~-----~v~~ 411 (1387)
.+... .......+..+..+.. ..++++||||||+++++.+++.|.+.++ ..+||+|++.+|. ++++
T Consensus 249 v~v~~------e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 249 VPPSD------EKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFN 319 (844)
T ss_pred EecCh------HHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHH
Confidence 22111 1112223333333332 4578999999999999999999988776 8999999999999 7788
Q ss_pred cC-C----Cc-------eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC
Q 000621 412 SY-P----GR-------RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE 479 (1387)
Q Consensus 412 ~f-~----g~-------~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~ 479 (1387)
.| + |+ .+|||||+++|+||||+. ++||+... +.++|+||+||+||.|
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a--------------------P~esyIQRiGRtgR~G 378 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA--------------------PFESMQQRFGRVNRFG 378 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC--------------------CHHHHHHHhcccCCCC
Confidence 88 5 43 689999999999999987 77776322 2378999999999997
Q ss_pred C--CeEEEeeccccccc-CCCCCCcchhccchHHHHHHHHHcCCCCC
Q 000621 480 P--GRCYRLYSKSDFET-RPLNQEPEIHRVHLGIAVLRILALGIRDV 523 (1387)
Q Consensus 480 ~--G~~~~L~s~~~~~~-~~~~~~pEi~r~~L~~~~L~l~~lgi~~~ 523 (1387)
. |..+.++..+.-.. -...-.|++++..+..+.+.....|..+.
T Consensus 379 ~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~~ 425 (844)
T TIGR02621 379 ELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNKR 425 (844)
T ss_pred CCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccccCCH
Confidence 3 33345543321111 11112356776666655555555554333
No 61
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=284.68 Aligned_cols=412 Identities=18% Similarity=0.214 Sum_probs=263.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHhcccCchhhhhhhhHhhhhhhccchhhHhhhhcCCCccccc--cccccCccccccccccC
Q 000621 54 NKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKK--ESYDANVDVFRFEDCQR 131 (1387)
Q Consensus 54 ~k~~~~~~~~~~ei~~l~~~~~~~~~~~~~~~~~~~kk~e~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~f~~lg~ 131 (1387)
.++.+++.++..||..+...+... .+++.|+.+..+.+.++++-+-..++. ...+-+.....|+. ..
T Consensus 7 s~ls~el~~i~~ei~~id~qiqel----------~~kkqel~qkkk~i~kkielk~~edsdag~~~eyd~spaawdk-d~ 75 (695)
T KOG0353|consen 7 SALSEELADIDGEIGAIDIQIQEL----------REKKQELIQKKKAIEKKIELKCLEDSDAGASNEYDRSPAAWDK-DD 75 (695)
T ss_pred HHHHHHHHhhccchhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCcccccc-CC
Confidence 345566666666665555543333 222233333333344444422211111 11111334455765 45
Q ss_pred CccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHH
Q 000621 132 FDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAI 211 (1387)
Q Consensus 132 ~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~ 211 (1387)
|||+....+++++.+++....|+ |..+|...+.+.+.++| .|||.|||++.-.+.+-. .+-.+++.|...|..
T Consensus 76 fpws~e~~~ilk~~f~lekfrpl--q~~ain~~ma~ed~~li-l~tgggkslcyqlpal~a----dg~alvi~plislme 148 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPL--QLAAINATMAGEDAFLI-LPTGGGKSLCYQLPALCA----DGFALVICPLISLME 148 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChh--HHHHhhhhhccCceEEE-EeCCCccchhhhhhHHhc----CCceEeechhHHHHH
Confidence 99999999999999999999998 88889888888888886 599999999633332222 356788889998877
Q ss_pred HHHHHHHHHhcCCCCCccEEEecC---------CCccccCCCcEEEEChhHH------HHHhhcCCCCCceeEEEEcCcc
Q 000621 212 SLAQRVREESRGCYEDDSVICYPS---------FSSAQHFDSKVIYMTDHCL------LQHFMNDRDLSRISCIIVDEAH 276 (1387)
Q Consensus 212 qla~rv~~~~~~~~~~~~vg~~~~---------~~~~~~~~~~Ivv~Tpg~L------l~~l~~~~~l~~l~~IIIDEaH 276 (1387)
...-.+..+.-... ...-... ........-+++|+||+.+ +..|........+.+|.|||+|
T Consensus 149 dqil~lkqlgi~as---~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevh 225 (695)
T KOG0353|consen 149 DQILQLKQLGIDAS---MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVH 225 (695)
T ss_pred HHHHHHHHhCcchh---hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeeccee
Confidence 66656655431100 0000000 0011123468999999975 4445555567778999999999
Q ss_pred ccccch-hHHHHH--HHHHHhcccCccEEeecccCCHHHHHH---HhccCCeeeeecccceeEEEEecCCCCCCccchhh
Q 000621 277 ERSLNT-DLLLAL--VKDLLCRRFDLRLVIMSATADAHQLSK---YFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASY 350 (1387)
Q Consensus 277 er~~~~-d~l~~~--lk~l~~~~~~~kiIlmSATl~~~~~~~---~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~ 350 (1387)
+.+.+. ||..++ +..+.+.+++..+|+++||.....+.+ .+.-...+.+........++|..... .+...+.
T Consensus 226 ccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qk--p~n~dd~ 303 (695)
T KOG0353|consen 226 CCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQK--PGNEDDC 303 (695)
T ss_pred ehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeC--CCChHHH
Confidence 888665 666554 666777889999999999975444332 21100111111111112233322211 2233455
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcC
Q 000621 351 VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETS 429 (1387)
Q Consensus 351 ~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~G 429 (1387)
.++++.++ .....+...||||-++.+++.++..|+..|+.+..||+.|.++++.-+.+.| .|++.|||||-++++|
T Consensus 304 ~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 304 IEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 55555544 3445678899999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCceEEEecCCCcc--ccccCC---------------CC----cccceecccCH---h-hHHHHhcccCCCC-CCeE
Q 000621 430 LTIPGVKFVIDSGMVKE--SYFEPG---------------TG----MNVLRVCRVSQ---S-SANQRAGRAGRTE-PGRC 483 (1387)
Q Consensus 430 IdIp~V~~VId~g~~k~--~~yd~~---------------~~----~~~L~~~~iS~---a-~~~QR~GRaGR~~-~G~~ 483 (1387)
||.|+|++||+..+|+. +||... +| +..|.++.-=+ + =-....|||||.+ +..|
T Consensus 381 idkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~c 460 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADC 460 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccE
Confidence 99999999999999984 334210 00 00010000000 0 0011789999998 9999
Q ss_pred EEeecccc
Q 000621 484 YRLYSKSD 491 (1387)
Q Consensus 484 ~~L~s~~~ 491 (1387)
+.+|.-.+
T Consensus 461 ilyy~~~d 468 (695)
T KOG0353|consen 461 ILYYGFAD 468 (695)
T ss_pred EEEechHH
Confidence 99998654
No 62
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=1.3e-29 Score=323.63 Aligned_cols=306 Identities=16% Similarity=0.168 Sum_probs=218.0
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcC-----CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 142 VRECKRLEDGLPIYMYRQDILRRIYGE-----QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 142 l~~l~~~~~~lP~~~q~~~i~~~l~~~-----~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
.+.+.+.-..-|+..|+.++..+..+. ...+++|+||||||.++...++.. ...+.++++++||++||.|+++.
T Consensus 251 ~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 251 LKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHH
Confidence 444444334468999999999888763 367779999999999876666554 23467899999999999999999
Q ss_pred HHHHhcCCCCCccEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHH
Q 000621 217 VREESRGCYEDDSVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLL 286 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~ 286 (1387)
+.+.+... +..++...+.... ....++|+|+||+.+.+ ...+.++++|||||+| |. ..
T Consensus 330 l~~l~~~~--~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~H-rf-g~---- 397 (681)
T PRK10917 330 LKKLLEPL--GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQH-RF-GV---- 397 (681)
T ss_pred HHHHHhhc--CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechh-hh-hH----
Confidence 99987443 2344444443321 12358999999988743 2357899999999999 43 11
Q ss_pred HHHHHHHhcccCccEEeecccCCHHHHHHHh-ccCCeeee---ecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhh
Q 000621 287 ALVKDLLCRRFDLRLVIMSATADAHQLSKYF-YDCGISHV---VGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVH 362 (1387)
Q Consensus 287 ~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f-~~~~v~~i---~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 362 (1387)
.....+.....+.++++||||+.+..++..+ +...+..+ +....|+...+..... .......+....
T Consensus 398 ~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---------~~~~~~~i~~~~ 468 (681)
T PRK10917 398 EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSR---------RDEVYERIREEI 468 (681)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCccc---------HHHHHHHHHHHH
Confidence 1222233334468899999999877765332 32222222 2223355555544321 223333333333
Q ss_pred hccCCCcEEEEeCCHH--------HHHHHHHHhcCC--CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCC
Q 000621 363 TTEKEGTILAFLTSKM--------EVEWACEKFDAP--SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLT 431 (1387)
Q Consensus 363 ~~~~~g~iLVF~~s~~--------eie~l~~~L~~~--~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GId 431 (1387)
..+.+++||||..+ .++.+++.|... ++.+..+||+|++++|..+++.| +|+.+|||||+++++|||
T Consensus 469 --~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiD 546 (681)
T PRK10917 469 --AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVD 546 (681)
T ss_pred --HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcc
Confidence 45779999999654 445666777643 47899999999999999999999 899999999999999999
Q ss_pred CCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeec
Q 000621 432 IPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYS 488 (1387)
Q Consensus 432 Ip~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s 488 (1387)
+|++++||+++.++. +.+++.||+||+||.| +|.||.+++
T Consensus 547 ip~v~~VIi~~~~r~-----------------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 547 VPNATVMVIENAERF-----------------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCcEEEEeCCCCC-----------------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999998876542 2367899999999998 999999996
No 63
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.8e-30 Score=311.59 Aligned_cols=312 Identities=20% Similarity=0.162 Sum_probs=218.9
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHHccccCCCeEEEeccHHHHHHHHHHHH
Q 000621 140 FIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQ--LVQFLADSGIAAEQSIVCTQPRKIAAISLAQRV 217 (1387)
Q Consensus 140 ~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~--i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv 217 (1387)
.+|+.........|- |++.|-..+.+ +++++..|||+|||++ +|..+. .+..||+.|...|.....+.+
T Consensus 7 ~~L~~~fGy~~FR~g--Q~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 7 QVLKQVFGYASFRPG--QQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred HHHHHHhCccccCCC--HHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHH
Confidence 345555554444544 55544444444 5555568999999985 666654 347889999999987666666
Q ss_pred HHHhcCCCCCccEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcC-CCCCceeEEEEcCccccccch-hHH
Q 000621 218 REESRGCYEDDSVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMND-RDLSRISCIIVDEAHERSLNT-DLL 285 (1387)
Q Consensus 218 ~~~~~~~~~~~~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~-~~l~~l~~IIIDEaHer~~~~-d~l 285 (1387)
.... ..+.+.....+. .....+++|.+|++|..--..+ -.-..+++++||||||-+-|. ||.
T Consensus 78 ~~~G------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 78 EAAG------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHcC------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 5542 122221111110 1124699999999985321111 124578999999999988776 888
Q ss_pred HHHH--HHHHhcccCccEEeecccCCHHHHHHHhc----cCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHH
Q 000621 286 LALV--KDLLCRRFDLRLVIMSATADAHQLSKYFY----DCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVG 359 (1387)
Q Consensus 286 ~~~l--k~l~~~~~~~kiIlmSATl~~~~~~~~f~----~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (1387)
.++. ..+....++++++.+|||.+.....+... +.+.+.+.+... -+++|..... .+ .......+.
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR-pNi~~~v~~~------~~-~~~q~~fi~ 223 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR-PNLALKVVEK------GE-PSDQLAFLA 223 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC-chhhhhhhhc------cc-HHHHHHHHH
Confidence 8874 44555667999999999998766443332 222222222111 1222222211 00 111111222
Q ss_pred HhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEE
Q 000621 360 EVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFV 438 (1387)
Q Consensus 360 ~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~V 438 (1387)
. ......++.||||.|++.++.+++.|...|+.+..|||+|+.++|..+.+.| +++.+|+|||++++||||.|||++|
T Consensus 224 ~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 224 T-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred h-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 2 2246678899999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccc
Q 000621 439 IDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 439 Id~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~ 493 (1387)
||+++|+.. ++|.|.+|||||.| |..|+.||++.|..
T Consensus 303 iH~~lP~s~------------------EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 303 IHYDLPGSI------------------ESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred EEecCCCCH------------------HHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 999998754 99999999999999 99999999998754
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.2e-29 Score=334.42 Aligned_cols=290 Identities=18% Similarity=0.193 Sum_probs=195.2
Q ss_pred EEcCCCCcHHHHHHHHHHHccc------------cCCCeEEEeccHHHHHHHHHHHHHHHhc----------CCCCCccE
Q 000621 173 LIGETGCGKSTQLVQFLADSGI------------AAEQSIVCTQPRKIAAISLAQRVREESR----------GCYEDDSV 230 (1387)
Q Consensus 173 I~a~TGSGKTt~i~~~ll~~~~------------~~~~~Ilv~~P~r~LA~qla~rv~~~~~----------~~~~~~~v 230 (1387)
|+||||||||+++..++++... ..+.++|++.|+|+|+.|+.+++..... ....+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4699999999986665544321 1246899999999999999998865221 11123344
Q ss_pred EEecCCCcc------ccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCccccccchhH---HHHHHHHHHh-cccC
Q 000621 231 ICYPSFSSA------QHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAHERSLNTDL---LLALVKDLLC-RRFD 298 (1387)
Q Consensus 231 g~~~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaHer~~~~d~---l~~~lk~l~~-~~~~ 298 (1387)
+...+.... ....++|+|+|||+|..++.+.. .++++++|||||+| ...++.. +...+.++.. ...+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H-~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH-AVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH-HhcccccccHHHHHHHHHHHhCCCC
Confidence 444332221 12468999999999988775442 78999999999999 4544421 2223333333 3457
Q ss_pred ccEEeecccC-CHHHHHHHhccC-Ceeee-e--cccceeEEEEecCCCCCCcc--------------chhhHHHHHHHHH
Q 000621 299 LRLVIMSATA-DAHQLSKYFYDC-GISHV-V--GRNFPVDVRYVPCATAGTSA--------------VASYVSDVVRMVG 359 (1387)
Q Consensus 299 ~kiIlmSATl-~~~~~~~~f~~~-~v~~i-~--gr~~pv~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~ 359 (1387)
.|+|++|||+ +.+.+++|+.+. ++..+ + .+..++.+. .+........ .......+...+.
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 8999999998 567888998653 32222 1 122333322 2211100000 0000001111111
Q ss_pred HhhhccCCCcEEEEeCCHHHHHHHHHHhcCCC---------------------------------CceEeccCCCCHhhh
Q 000621 360 EVHTTEKEGTILAFLTSKMEVEWACEKFDAPS---------------------------------AVALPFHGQLSFDEQ 406 (1387)
Q Consensus 360 ~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~---------------------------------~~v~~lh~~l~~~er 406 (1387)
... ....++||||||+..++.++..|++.. ..+..|||+|++++|
T Consensus 239 ~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 111 346889999999999999998886421 226789999999999
Q ss_pred hhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC--CCeE
Q 000621 407 FCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE--PGRC 483 (1387)
Q Consensus 407 ~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~--~G~~ 483 (1387)
..+++.| +|+.++||||+.+++||||++|++||++|.|+ |.++|+||+|||||.. .+.+
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~------------------sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL------------------SVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC------------------CHHHHHHHhCCCCCCCCCccEE
Confidence 9999999 89999999999999999999999999988755 5599999999999973 4455
Q ss_pred E
Q 000621 484 Y 484 (1387)
Q Consensus 484 ~ 484 (1387)
+
T Consensus 379 l 379 (1490)
T PRK09751 379 L 379 (1490)
T ss_pred E
Confidence 5
No 65
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.7e-30 Score=298.02 Aligned_cols=342 Identities=18% Similarity=0.220 Sum_probs=251.0
Q ss_pred CccccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc-----
Q 000621 120 NVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI----- 194 (1387)
Q Consensus 120 ~~~~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~----- 194 (1387)
+.++.+|.++. ..+ ..+..+++.+...++.-|+.+|+++|+-.+...+++. |||||||||+++...++....
T Consensus 128 ~~~l~~f~~lt-~~~-~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lA-capTGsgKtlaf~~Pil~~L~~~~~~ 204 (593)
T KOG0344|consen 128 PPPLLSFSDLT-YDY-SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLA-CAPTGSGKTLAFNLPILQHLKDLSQE 204 (593)
T ss_pred CCccccccccc-hhh-hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEE-eccCCCcchhhhhhHHHHHHHHhhcc
Confidence 45666777543 111 3567789999999999999999999988886666655 999999999985555544321
Q ss_pred --cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC-----C--CccccCCCcEEEEChhHHHHHhhcCC---
Q 000621 195 --AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS-----F--SSAQHFDSKVIYMTDHCLLQHFMNDR--- 262 (1387)
Q Consensus 195 --~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~-----~--~~~~~~~~~Ivv~Tpg~Ll~~l~~~~--- 262 (1387)
..+-+++|+.|+|+||.|++..+.++.........+..... . ........+|++.||-++...+...+
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~i 284 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNI 284 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccc
Confidence 22347899999999999999999887522111111111000 0 00112357999999999999998776
Q ss_pred CCCceeEEEEcCccccccch-hHHHHHHHHHHh-cccCccEEeecccCCH--HHHHHHhccCCeeeeecccce----eEE
Q 000621 263 DLSRISCIIVDEAHERSLNT-DLLLALVKDLLC-RRFDLRLVIMSATADA--HQLSKYFYDCGISHVVGRNFP----VDV 334 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~-d~l~~~lk~l~~-~~~~~kiIlmSATl~~--~~~~~~f~~~~v~~i~gr~~p----v~~ 334 (1387)
.+..+.++|+||+| +.++- .|...+..++.. ..+++++-+||||.+. +.++.......+..+.|.... |..
T Consensus 285 dl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Q 363 (593)
T KOG0344|consen 285 DLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQ 363 (593)
T ss_pred hhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhh
Confidence 89999999999999 77776 565555555443 3478899999999864 445544433333333333211 111
Q ss_pred EEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHh-cCCCCceEeccCCCCHhhhhhhhccC
Q 000621 335 RYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKF-DAPSAVALPFHGQLSFDEQFCVFKSY 413 (1387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L-~~~~~~v~~lh~~l~~~er~~v~~~f 413 (1387)
...-. .....+.-.+.++....-..++|||+.+.+.+.++...| .-.++.+..+||..++.+|..+++.|
T Consensus 364 elvF~---------gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 364 ELVFC---------GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred hheee---------ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 11110 001223444555565567789999999999999999999 67789999999999999999999999
Q ss_pred -CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 414 -PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 414 -~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
.|++.|++||++++||||+-+|+.||++|+|... -+|+||+||+||.| +|.+|.+|+.++
T Consensus 435 R~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~------------------~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 435 RIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSD------------------LSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred hccCeeEEEehhhhhccccccCcceEEecCCCchh------------------HHHHHHhhccCCCCCCcceEEEecccc
Confidence 8999999999999999999999999999997744 88999999999998 999999999965
Q ss_pred c
Q 000621 492 F 492 (1387)
Q Consensus 492 ~ 492 (1387)
.
T Consensus 497 ~ 497 (593)
T KOG0344|consen 497 M 497 (593)
T ss_pred c
Confidence 4
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=3.3e-29 Score=317.97 Aligned_cols=306 Identities=18% Similarity=0.179 Sum_probs=212.5
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcC-----CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHH
Q 000621 144 ECKRLEDGLPIYMYRQDILRRIYGE-----QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVR 218 (1387)
Q Consensus 144 ~l~~~~~~lP~~~q~~~i~~~l~~~-----~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~ 218 (1387)
-+..+.+ .|+..|+.+|..++.+- ...+++|+||||||.++...++.. ...+.++++++||++||.|+++.+.
T Consensus 228 ~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~ 305 (630)
T TIGR00643 228 FLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLR 305 (630)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHH
Confidence 3344555 68999999999988752 246789999999999876665544 2346689999999999999999999
Q ss_pred HHhcCCCCCccEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHH
Q 000621 219 EESRGCYEDDSVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLAL 288 (1387)
Q Consensus 219 ~~~~~~~~~~~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~ 288 (1387)
+.+.... ..++...+.... ....++|+|+||+.+.+ ...+.++++|||||+|. . ..+....+
T Consensus 306 ~l~~~~g--i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~-f-g~~qr~~l 377 (630)
T TIGR00643 306 NLLAPLG--IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHR-F-GVEQRKKL 377 (630)
T ss_pred HHhcccC--cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhh-c-cHHHHHHH
Confidence 8875322 233333222111 12357999999998753 23578999999999993 2 11111112
Q ss_pred HHHHHhcccCccEEeecccCCHHHHHHHh-ccCCee---eeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhc
Q 000621 289 VKDLLCRRFDLRLVIMSATADAHQLSKYF-YDCGIS---HVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTT 364 (1387)
Q Consensus 289 lk~l~~~~~~~kiIlmSATl~~~~~~~~f-~~~~v~---~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 364 (1387)
.... ....+.++++||||+.+..+.... +...+. ..+....|+...+..... .......+....
T Consensus 378 ~~~~-~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~---------~~~~~~~i~~~l-- 445 (630)
T TIGR00643 378 REKG-QGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDE---------KDIVYEFIEEEI-- 445 (630)
T ss_pred HHhc-ccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcch---------HHHHHHHHHHHH--
Confidence 1111 111267899999998776655322 222211 122223456655544311 122233232222
Q ss_pred cCCCcEEEEeCCHH--------HHHHHHHHhcC--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCC
Q 000621 365 EKEGTILAFLTSKM--------EVEWACEKFDA--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIP 433 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~--------eie~l~~~L~~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp 433 (1387)
..+.+++|||+..+ .++.+++.|.+ .++.+..+||+|++++|..+++.| +|+.+|||||+++++|||+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 35679999999763 45566676664 477899999999999999999999 89999999999999999999
Q ss_pred CceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeec
Q 000621 434 GVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYS 488 (1387)
Q Consensus 434 ~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s 488 (1387)
++++||.++.++. +.+++.||+|||||.| +|.||.++.
T Consensus 526 ~v~~VIi~~~~r~-----------------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 526 NATVMVIEDAERF-----------------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCcEEEEeCCCcC-----------------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999998776542 2378899999999998 999999984
No 67
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.8e-30 Score=286.75 Aligned_cols=333 Identities=18% Similarity=0.178 Sum_probs=256.6
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc---cCCCeE
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI---AAEQSI 200 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~---~~~~~I 200 (1387)
..|..+| |...++++|.+.++..|+++|++.|+-+|.+.+++. +|-||||||.++...+++... ..+.+.
T Consensus 21 g~fqsmg------L~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~-martgsgktaaf~ipm~e~Lk~~s~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSMG------LDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVG-MARTGSGKTAAFLIPMIEKLKSHSQTGLRA 93 (529)
T ss_pred CCccccC------CCHHHHHHHHHhhcCCCCchhcccccceeeccccce-eeecCCcchhhHHHHHHHHHhhccccccce
Confidence 4577777 999999999999999999999999999999988888 689999999997666665422 234589
Q ss_pred EEeccHHHHHHHHHHHHHHHhcCCCCCcc--EEEecCCC--ccccCCCcEEEEChhHHHHHhhcC-CCCCceeEEEEcCc
Q 000621 201 VCTQPRKIAAISLAQRVREESRGCYEDDS--VICYPSFS--SAQHFDSKVIYMTDHCLLQHFMND-RDLSRISCIIVDEA 275 (1387)
Q Consensus 201 lv~~P~r~LA~qla~rv~~~~~~~~~~~~--vg~~~~~~--~~~~~~~~Ivv~Tpg~Ll~~l~~~-~~l~~l~~IIIDEa 275 (1387)
+++.|+|+||.|..+.+++...+...... +|+....+ .....+++|+++|||+++.....- -.|+.+.+||+||+
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999998754433222 22211111 113457999999999998665333 37899999999999
Q ss_pred cccccchhHHHHHHHHHHhcccCccEEeecccCCHH--HHHHHhccCCeeeeecccceeEEEEecCCCC----CCccchh
Q 000621 276 HERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGRNFPVDVRYVPCATA----GTSAVAS 349 (1387)
Q Consensus 276 Her~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~----~~~~~~~ 349 (1387)
+ |.+.++|...+-+.+...+.+.|.++||||++.. .|++- |-..|+-+....+... .......
T Consensus 174 d-rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~faka----------Gl~~p~lVRldvetkise~lk~~f~~~ 242 (529)
T KOG0337|consen 174 D-RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKA----------GLVPPVLVRLDVETKISELLKVRFFRV 242 (529)
T ss_pred h-HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHc----------cCCCCceEEeehhhhcchhhhhheeee
Confidence 9 9999999999999999999999999999999855 23322 2233433332111100 0000001
Q ss_pred hHHHHHHHHHHhhhc-cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhh
Q 000621 350 YVSDVVRMVGEVHTT-EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAE 427 (1387)
Q Consensus 350 ~~~~~~~~l~~i~~~-~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae 427 (1387)
..+++...+..++.. -.+.+++||+++..+++.+...|+..++.+..++|+|++..|..-+..| .++..++|.|++|+
T Consensus 243 ~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaa 322 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAA 322 (529)
T ss_pred ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhh
Confidence 123344444444432 2356899999999999999999999999999999999999999999999 78889999999999
Q ss_pred cCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 428 TSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 428 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
||+|||..+.||++++|... .-|+||+||+.|.| .|.+|.++..++.
T Consensus 323 RG~diplldnvinyd~p~~~------------------klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 323 RGLDIPLLDNVINYDFPPDD------------------KLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred ccCCCccccccccccCCCCC------------------ceEEEEecchhhccccceEEEEEecccc
Confidence 99999999999999996644 34579999999998 9999999987653
No 68
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=307.29 Aligned_cols=313 Identities=21% Similarity=0.208 Sum_probs=229.2
Q ss_pred cccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccC-------CCeEEEeccHHH
Q 000621 136 RIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAA-------EQSIVCTQPRKI 208 (1387)
Q Consensus 136 ~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~-------~~~Ilv~~P~r~ 208 (1387)
.+++.+.+.+.+. +.-|++.|..+|+.+..+.++++ +||||||||+++..++++..... +-.++++.|.|+
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLi-iAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLI-IAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEE-EcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4677777777766 99999999999999886655555 69999999998666665542221 237899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC---CCCceeEEEEcCccc--
Q 000621 209 AAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR---DLSRISCIIVDEAHE-- 277 (1387)
Q Consensus 209 LA~qla~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~---~l~~l~~IIIDEaHe-- 277 (1387)
|+..+-.++....... |..+...++... .....++|+++||+.|.-++.... .|.++.+|||||+|+
T Consensus 85 Ln~Di~~rL~~~~~~~--G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 85 LNNDIRRRLEEPLREL--GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHc--CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 9999999998876422 222322111111 122458999999999987776543 799999999999995
Q ss_pred ---cccchhHHHHHHHHHHhcccCccEEeecccC-CHHHHHHHhccCC----eeeeec-ccceeEEEEecCCCCCCccch
Q 000621 278 ---RSLNTDLLLALVKDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCG----ISHVVG-RNFPVDVRYVPCATAGTSAVA 348 (1387)
Q Consensus 278 ---r~~~~d~l~~~lk~l~~~~~~~kiIlmSATl-~~~~~~~~f~~~~----v~~i~g-r~~pv~~~~~~~~~~~~~~~~ 348 (1387)
|....... +.++...-+++|.|++|||. +++..++|+.+.. ++.+.+ +...+.+.......... .
T Consensus 163 ~sKRG~~Lsl~---LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~---~ 236 (814)
T COG1201 163 ESKRGVQLALS---LERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD---E 236 (814)
T ss_pred ccccchhhhhh---HHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc---c
Confidence 33222222 34444444489999999997 7888999996543 333332 22233332222211000 1
Q ss_pred hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCC-CceEeccCCCCHhhhhhhhccC-CCceEEEEecchh
Q 000621 349 SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPS-AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVA 426 (1387)
Q Consensus 349 ~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~-~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ia 426 (1387)
.........+.++.+ ....+|||+||+..+|.++..|+..+ ..+..+||+++.++|..+.+.| +|+.+++|||+.+
T Consensus 237 ~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 237 ELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred chhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 223345555555554 34599999999999999999998765 7899999999999999999999 8999999999999
Q ss_pred hcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCC
Q 000621 427 ETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRT 478 (1387)
Q Consensus 427 e~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~ 478 (1387)
|-|||+.+|+.||+++-|+.- +...||+||+|+.
T Consensus 315 ELGIDiG~vdlVIq~~SP~sV------------------~r~lQRiGRsgHr 348 (814)
T COG1201 315 ELGIDIGDIDLVIQLGSPKSV------------------NRFLQRIGRAGHR 348 (814)
T ss_pred hhccccCCceEEEEeCCcHHH------------------HHHhHhccccccc
Confidence 999999999999999887754 8889999999986
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-28 Score=283.00 Aligned_cols=313 Identities=22% Similarity=0.262 Sum_probs=222.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCC
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSF 236 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~ 236 (1387)
+|..|......++.+ |+.|||=|||+.+...+.......++++++++||+-|+.|.+..+.+.++.. ....+...+..
T Consensus 19 YQ~~i~a~al~~NtL-vvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev 96 (542)
T COG1111 19 YQLNIAAKALFKNTL-VVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEV 96 (542)
T ss_pred HHHHHHHHHhhcCeE-EEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCC
Confidence 555555544444444 4579999999986665554322234489999999999999999999987432 22222222111
Q ss_pred Cc----cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC--C
Q 000621 237 SS----AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA--D 309 (1387)
Q Consensus 237 ~~----~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl--~ 309 (1387)
.. ......+|+|+||+.+.+-+.... .+.+++++|+|||| |......+..+.+.......+..+++||||+ +
T Consensus 97 ~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~ 175 (542)
T COG1111 97 RPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSD 175 (542)
T ss_pred ChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCCCC
Confidence 11 123468999999999998887776 89999999999999 8888877778888888878889999999997 5
Q ss_pred HHHHHHHhccCCeeeeeccc----------ceeEEEEecCCCC----------------------------CCc------
Q 000621 310 AHQLSKYFYDCGISHVVGRN----------FPVDVRYVPCATA----------------------------GTS------ 345 (1387)
Q Consensus 310 ~~~~~~~f~~~~v~~i~gr~----------~pv~~~~~~~~~~----------------------------~~~------ 345 (1387)
.+.+++...+..+-++.-++ ..+++.+.+.... ...
T Consensus 176 ~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kd 255 (542)
T COG1111 176 LEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKD 255 (542)
T ss_pred HHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhH
Confidence 66777777665554444322 1233333322210 000
Q ss_pred --------------------------------------------------------------------------------
Q 000621 346 -------------------------------------------------------------------------------- 345 (1387)
Q Consensus 346 -------------------------------------------------------------------------------- 345 (1387)
T Consensus 256 l~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~ 335 (542)
T COG1111 256 LLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALR 335 (542)
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHH
Confidence
Q ss_pred ---------cchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceE-ec--------cCCCCHhhhh
Q 000621 346 ---------AVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVAL-PF--------HGQLSFDEQF 407 (1387)
Q Consensus 346 ---------~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~-~l--------h~~l~~~er~ 407 (1387)
...+.++.....+.+.+....+.++|||++-++.++.+...|.+.+..+. .+ ..||++.+|.
T Consensus 336 ~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~ 415 (542)
T COG1111 336 LLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQK 415 (542)
T ss_pred HHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHH
Confidence 00000011111222222334567999999999999999999988766553 22 3579999999
Q ss_pred hhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEe
Q 000621 408 CVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRL 486 (1387)
Q Consensus 408 ~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L 486 (1387)
++++.| .|..+|||||+++|.|+|||+|++||-|.... |.--++||.|||||..+|..|.|
T Consensus 416 eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp------------------SeIR~IQR~GRTGR~r~Grv~vL 477 (542)
T COG1111 416 EIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP------------------SEIRSIQRKGRTGRKRKGRVVVL 477 (542)
T ss_pred HHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc------------------HHHHHHHhhCccccCCCCeEEEE
Confidence 999999 89999999999999999999999999765433 44668899999999999999999
Q ss_pred eccc
Q 000621 487 YSKS 490 (1387)
Q Consensus 487 ~s~~ 490 (1387)
+++.
T Consensus 478 vt~g 481 (542)
T COG1111 478 VTEG 481 (542)
T ss_pred EecC
Confidence 9987
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=1.7e-28 Score=293.36 Aligned_cols=286 Identities=19% Similarity=0.191 Sum_probs=187.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHccc-cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE------EecCCC------
Q 000621 171 LVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI------CYPSFS------ 237 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~ll~~~~-~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg------~~~~~~------ 237 (1387)
++|+||||||||++++++++.... ....++++++|+|+|+.|+++++...++... +...+ .....+
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNL-GLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCccc-EEeeccHHHHHHhccCCchhHHH
Confidence 677899999999998888776422 2356899999999999999999999864211 10000 000000
Q ss_pred --------ccccCCCcEEEEChhHHHHHhhcCC-----CC--CceeEEEEcCccccccch--hHHHHHHHHHHhcccCcc
Q 000621 238 --------SAQHFDSKVIYMTDHCLLQHFMNDR-----DL--SRISCIIVDEAHERSLNT--DLLLALVKDLLCRRFDLR 300 (1387)
Q Consensus 238 --------~~~~~~~~Ivv~Tpg~Ll~~l~~~~-----~l--~~l~~IIIDEaHer~~~~--d~l~~~lk~l~~~~~~~k 300 (1387)
.......+|+++||+.++..+.... .+ -..++||||||| +..+. +++..+++.+. ..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h-~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVH-FYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCC-CCCHHHHHHHHHHHHHHH--HcCCC
Confidence 0001246799999999988776521 11 123899999999 55443 33444444433 34789
Q ss_pred EEeecccCCHHHHHHHhccCCeeeeecccceeE-------EEEecCCCCCCccchhhHHHHHHHHHHhhh-ccCCCcEEE
Q 000621 301 LVIMSATADAHQLSKYFYDCGISHVVGRNFPVD-------VRYVPCATAGTSAVASYVSDVVRMVGEVHT-TEKEGTILA 372 (1387)
Q Consensus 301 iIlmSATl~~~~~~~~f~~~~v~~i~gr~~pv~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~g~iLV 372 (1387)
+++||||++ +.+.+++.......... ..+.. ..+.... .........+..+.. ...++++||
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~~~~~~lV 227 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEERRFERHRFIKIE--------SDKVGEISSLERLLEFIKKGGKIAI 227 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCccccc-CCCCccccccccccceeec--------cccccCHHHHHHHHHHhhCCCeEEE
Confidence 999999997 44666654322111110 01100 0000000 000001111222221 145789999
Q ss_pred EeCCHHHHHHHHHHhcCCCC--ceEeccCCCCHhhhhhh----hccC-CCceEEEEecchhhcCCCCCCceEEEecCCCc
Q 000621 373 FLTSKMEVEWACEKFDAPSA--VALPFHGQLSFDEQFCV----FKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVK 445 (1387)
Q Consensus 373 F~~s~~eie~l~~~L~~~~~--~v~~lh~~l~~~er~~v----~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k 445 (1387)
||+++++++.+++.|++.+. .+..+||++++.+|.++ ++.| +|+.+|||||+++++||||| +++||+...
T Consensus 228 f~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~-- 304 (358)
T TIGR01587 228 IVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA-- 304 (358)
T ss_pred EECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC--
Confidence 99999999999999976554 59999999999998764 7788 78999999999999999996 788886433
Q ss_pred cccccCCCCcccceecccCHhhHHHHhcccCCCC--C---CeEEEeecccc
Q 000621 446 ESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE--P---GRCYRLYSKSD 491 (1387)
Q Consensus 446 ~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~--~---G~~~~L~s~~~ 491 (1387)
+.++|+||+||+||.| . |..|.++...+
T Consensus 305 ------------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 305 ------------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ------------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 3378999999999986 2 37777776554
No 71
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=289.39 Aligned_cols=468 Identities=18% Similarity=0.193 Sum_probs=301.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc---------cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI---------AAEQSIVCTQPRKIAAISLAQRVREESRGCYE 226 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~---------~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~ 226 (1387)
.|...++.+-+.+.+++||||||||||-.+...++.... ...-+|++++|+++||..+++.+.+.+.. .
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~--~ 191 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP--L 191 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc--c
Confidence 588889999999999999999999999876555554311 12448999999999999999999987742 2
Q ss_pred CccEEEecCCCcc---ccCCCcEEEEChhHH---HHHhhcCC-CCCceeEEEEcCcc----ccccchhHHHHHHHH-HHh
Q 000621 227 DDSVICYPSFSSA---QHFDSKVIYMTDHCL---LQHFMNDR-DLSRISCIIVDEAH----ERSLNTDLLLALVKD-LLC 294 (1387)
Q Consensus 227 ~~~vg~~~~~~~~---~~~~~~Ivv~Tpg~L---l~~l~~~~-~l~~l~~IIIDEaH----er~~~~d~l~~~lk~-l~~ 294 (1387)
+..|+-..+.... .-..++|+|+||+.. .|.-..+. .++.+.+|||||+| +|+.-.+.+.+...+ +..
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 3345443332221 234799999999974 33322222 67889999999999 344333333333222 223
Q ss_pred cccCccEEeecccC-CHHHHHHHhcc---CCeeeeecccceeEEE--EecCCCCCC-ccchhhHHHHHHHHHHhhhccCC
Q 000621 295 RRFDLRLVIMSATA-DAHQLSKYFYD---CGISHVVGRNFPVDVR--YVPCATAGT-SAVASYVSDVVRMVGEVHTTEKE 367 (1387)
Q Consensus 295 ~~~~~kiIlmSATl-~~~~~~~~f~~---~~v~~i~gr~~pv~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~~~~ 367 (1387)
....+|+|++|||+ +.+.++.|+.- .+++.+.++..|+.+. +.-...... ......-+...+.+.+.+ ..+
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g 349 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEG 349 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcC
Confidence 44678999999996 67889999975 4566777766665543 222211100 111111122333333333 568
Q ss_pred CcEEEEeCCHHHHHHHHHHhcCC----------------C-------CceEeccCCCCHhhhhhhhccC-CCceEEEEec
Q 000621 368 GTILAFLTSKMEVEWACEKFDAP----------------S-------AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT 423 (1387)
Q Consensus 368 g~iLVF~~s~~eie~l~~~L~~~----------------~-------~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT 423 (1387)
.+++|||+++.++.+.|+.|.+. . .....+|+||.-.+|..+.+.| .|..+|++||
T Consensus 350 ~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cT 429 (1230)
T KOG0952|consen 350 HQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCT 429 (1230)
T ss_pred CeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEec
Confidence 89999999999999999888530 1 2356789999999999999999 8999999999
Q ss_pred chhhcCCCCCCceEEEecCCCccccccCCCCc-ccceecccCHhhHHHHhcccCCCC---CCeEEEeecccccc---cCC
Q 000621 424 NVAETSLTIPGVKFVIDSGMVKESYFEPGTGM-NVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSDFE---TRP 496 (1387)
Q Consensus 424 ~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~-~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~~~---~~~ 496 (1387)
..++.|+++|+--++|- | +..||+..|. ..+ +--+-+|..|||||.+ .|..+.+-+.+..+ ++.
T Consensus 430 aTLAwGVNLPA~aViIK-G---T~~ydsskg~f~dl-----gilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 430 ATLAWGVNLPAYAVIIK-G---TQVYDSSKGSFVDL-----GILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred ceeeeccCCcceEEEec-C---CcccccccCceeee-----hHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 99999999997666663 2 4578877652 222 3467789999999985 78777776665433 333
Q ss_pred CCCCc---------------chhcc---chHHHHHHHHH------cCCCCCCCc----cc-cCCCc-----HHHHHHHHH
Q 000621 497 LNQEP---------------EIHRV---HLGIAVLRILA------LGIRDVQGF----DF-IDAPS-----AKAIEMAIR 542 (1387)
Q Consensus 497 ~~~~p---------------Ei~r~---~L~~~~L~l~~------lgi~~~~~f----~~-ld~P~-----~~~l~~al~ 542 (1387)
....| ||-.- +++..+-.|+. |+ +|+..+ .. ..-|. .+.+..++.
T Consensus 501 ~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~-KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~ 579 (1230)
T KOG0952|consen 501 TGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR-KNPMAYGISYEELEPDPRLESHRRELCLVAAM 579 (1230)
T ss_pred cCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec-cChHHhhhhhhcccCCchHHHHHHHHHHHHHH
Confidence 33322 11110 11111111111 11 111111 11 11222 134455666
Q ss_pred HHHHcCce--eccCCccccCHHHHHhhhcCCChhhHHHHHHHhh-hcchHHHHHHhHHhcCCCCcccccCCchhhhHHHH
Q 000621 543 NLVQLGAI--KLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFR-RRLGREGLVLAAVMANASSIFCRVGSDDEKIKADC 619 (1387)
Q Consensus 543 ~L~~lgal--~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~-~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~ 619 (1387)
.|.....+ |..+..+..|++||.|+.+++..+..+.+..... +--.++++.|++...+.+.+=+|. +++...+.
T Consensus 580 ~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~---eE~k~l~e 656 (1230)
T KOG0952|consen 580 ELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVRE---EEKKELKE 656 (1230)
T ss_pred HhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhh---hhHHHHHH
Confidence 77665444 5556678899999999999999999999999887 666778888887665555544432 22223333
Q ss_pred h------hhhhcCCCCcHHHHHHHHHH
Q 000621 620 L------KVQFCHRNGDLFTLLSVYRE 640 (1387)
Q Consensus 620 ~------~~~f~~~~gD~lt~l~~~~~ 640 (1387)
. +..|....|+.-.++.+|..
T Consensus 657 l~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 657 LNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred HHhcccccccccccchhHHHHHHhhhh
Confidence 3 23343335788888877754
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2.6e-28 Score=271.92 Aligned_cols=310 Identities=19% Similarity=0.195 Sum_probs=223.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQ--LVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~--i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
.+-|.+++.-++.+++.+.|++|||+|||++ +|.++ + ++..||+.|..+|.....+.+..+-..+....+--
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~--~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV--H----GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--h----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 3448889999999999999999999999996 45443 2 34678889999988777776665431111000000
Q ss_pred E-e-----cCCCccccCCCcEEEEChhHHH-----HHhhcCCCCCceeEEEEcCccccccch-hHHHHHHH--HHHhccc
Q 000621 232 C-Y-----PSFSSAQHFDSKVIYMTDHCLL-----QHFMNDRDLSRISCIIVDEAHERSLNT-DLLLALVK--DLLCRRF 297 (1387)
Q Consensus 232 ~-~-----~~~~~~~~~~~~Ivv~Tpg~Ll-----~~l~~~~~l~~l~~IIIDEaHer~~~~-d~l~~~lk--~l~~~~~ 297 (1387)
. . ........++.+++|.||++-. ..|..-..-..++++|+||||+-+.|. ||.+++++ .+....+
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~ 175 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP 175 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC
Confidence 0 0 0011123356899999998742 122222234457999999999988775 88888854 4556678
Q ss_pred CccEEeecccCCHHHHHHHhc----cCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhh----h------
Q 000621 298 DLRLVIMSATADAHQLSKYFY----DCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVH----T------ 363 (1387)
Q Consensus 298 ~~kiIlmSATl~~~~~~~~f~----~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~----~------ 363 (1387)
+...+.++||.+++.-.+.+. ..|+-.+....|.-+++|...- ...+.+-...+..+. .
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~-------K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHM-------KSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHH-------HHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 999999999998776544443 2344444444444444443321 122222222222221 1
Q ss_pred ---ccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEE
Q 000621 364 ---TEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVI 439 (1387)
Q Consensus 364 ---~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VI 439 (1387)
....|..||||.|+++||+++-.|...|+.+..||++|...+|..+-+.| +++..||+||+.+++|+|.|+|++||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 11247899999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccccc
Q 000621 440 DSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFET 494 (1387)
Q Consensus 440 d~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~~ 494 (1387)
+.+.++.. +-|-|..|||||.| +..|-.+|+.+|.+.
T Consensus 329 HW~~~qn~------------------AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 329 HWSPSQNL------------------AGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ecCchhhh------------------HHHHHhccccccCCCccceeeeecccchHH
Confidence 99887754 88999999999999 999999999887654
No 73
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=3.9e-27 Score=296.56 Aligned_cols=355 Identities=16% Similarity=0.190 Sum_probs=262.5
Q ss_pred hhhhhhhhhHHHHHHhHHhHHHHHHHHHHHhcccCchhhhhhhhHhhhhhhccchhhHhhhhcCCCccccccccccCccc
Q 000621 44 VKGLMEGELVNKWLKMKDDKCDEIANVSNRLGSRNSYAVFCELNERKKGEFKNGMHCVLKYLDDPQNVAKKESYDANVDV 123 (1387)
Q Consensus 44 ~~~~~~~~~~~k~~~~~~~~~~ei~~l~~~~~~~~~~~~~~~~~~~kk~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 123 (1387)
+.+--+.+.+.|+++.+.+++.|+-++++++... .......+...+. ....-
T Consensus 539 LG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~--~G~af~~d~~~q~--------------------------~F~~~ 590 (1139)
T COG1197 539 LGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAK--KGFAFPPDTEWQE--------------------------EFEAS 590 (1139)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCCChHHHH--------------------------HHHhc
Confidence 3334455888999999999999999999996554 2222222222222 22234
Q ss_pred cccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEE
Q 000621 124 FRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGE--QILVLIGETGCGKSTQLVQFLADSGIAAEQSIV 201 (1387)
Q Consensus 124 ~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~--~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Il 201 (1387)
+||+ ..++.++++...... +.+. -.=+|||.-|-|||.+++..+... ...+++|.
T Consensus 591 FPye---------ET~DQl~AI~eVk~D-------------M~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVA 647 (1139)
T COG1197 591 FPYE---------ETPDQLKAIEEVKRD-------------MESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVA 647 (1139)
T ss_pred CCCc---------CCHHHHHHHHHHHHH-------------hccCCcchheeecCcCCcHHHHHHHHHHHH-hcCCCeEE
Confidence 5555 345555555432211 1111 123558999999999988877665 34568999
Q ss_pred EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc----------cCCCcEEEEChhHHHHHhhcCCCCCceeEEE
Q 000621 202 CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ----------HFDSKVIYMTDHCLLQHFMNDRDLSRISCII 271 (1387)
Q Consensus 202 v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~----------~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~II 271 (1387)
+++||.+||.|.++.+++.+.+.++ .|+..+|+.+.. ....+|+|+| .+.|..+-.+++++++|
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV--~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPV--RIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCe--eEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCCCcEEecCCeEE
Confidence 9999999999999999999977664 577777776542 2357999999 55566677899999999
Q ss_pred EcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHHhccC---Ceeee-ecccceeEEEEecCCCCCCccc
Q 000621 272 VDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDC---GISHV-VGRNFPVDVRYVPCATAGTSAV 347 (1387)
Q Consensus 272 IDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~~~---~v~~i-~gr~~pv~~~~~~~~~~~~~~~ 347 (1387)
|||-|. |...--..+..++.++-++-||||+-+.++..-+.+. .++.. |...+||..++.+...
T Consensus 722 IDEEqR------FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~------ 789 (1139)
T COG1197 722 IDEEQR------FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD------ 789 (1139)
T ss_pred Eechhh------cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCCh------
Confidence 999994 4445556677778999999999999888887666543 33333 4567899998887642
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecc
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATN 424 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ 424 (1387)
.. +.+.+..- -..+|++..-.|.+++++.+++.|+. +..++...||.|+..+-+.++..| +|+.+|||||.
T Consensus 790 -~~---ireAI~RE--l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT 863 (1139)
T COG1197 790 -LL---IREAILRE--LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT 863 (1139)
T ss_pred -HH---HHHHHHHH--HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee
Confidence 11 11222111 15789999999999999999999986 678899999999999999999999 99999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccc
Q 000621 425 VAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 425 iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~ 490 (1387)
|.|+|||||+++.+|-..-- . -|+ ++.-|..||+||.. .|.||.||++.
T Consensus 864 IIEtGIDIPnANTiIIe~AD---~----fGL----------sQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 864 IIETGIDIPNANTIIIERAD---K----FGL----------AQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeecCcCCCCCceEEEeccc---c----ccH----------HHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999832110 0 122 66679999999987 99999999975
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=2.1e-26 Score=273.58 Aligned_cols=286 Identities=16% Similarity=0.145 Sum_probs=187.0
Q ss_pred HHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC--CccEEEe
Q 000621 157 YRQDILRRIYGE-QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYE--DDSVICY 233 (1387)
Q Consensus 157 q~~~i~~~l~~~-~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~--~~~vg~~ 233 (1387)
|.+.+..+..++ ++++++||||||||+++...++.. ..+++++.|+++|+.+.++++.+.+..... +..+.-.
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 444555555555 368889999999999876666543 346789999999999999999887632211 1111111
Q ss_pred cCC---C---------------c--------cccCCCcEEEEChhHHHHHhhc---CC------CCCceeEEEEcCcccc
Q 000621 234 PSF---S---------------S--------AQHFDSKVIYMTDHCLLQHFMN---DR------DLSRISCIIVDEAHER 278 (1387)
Q Consensus 234 ~~~---~---------------~--------~~~~~~~Ivv~Tpg~Ll~~l~~---~~------~l~~l~~IIIDEaHer 278 (1387)
.+. + . .....+.|+++||++|...+.. .+ .+.++++||+||+|+.
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 110 0 0 0012467888889988654432 22 3688999999999975
Q ss_pred ccchh-HHH---HHHHHHHhcccCccEEeecccCCHHHHH---HH-hccCCeeeeecc--cc------------------
Q 000621 279 SLNTD-LLL---ALVKDLLCRRFDLRLVIMSATADAHQLS---KY-FYDCGISHVVGR--NF------------------ 330 (1387)
Q Consensus 279 ~~~~d-~l~---~~lk~l~~~~~~~kiIlmSATl~~~~~~---~~-f~~~~v~~i~gr--~~------------------ 330 (1387)
+.+.. .+. .....+.......++++||||++..... +. +.+.++..+.|+ .+
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPV 237 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccccee
Confidence 54332 222 3333333333357999999999865332 22 123466666666 11
Q ss_pred --eeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCC--CceEeccCCCCHhhh
Q 000621 331 --PVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPS--AVALPFHGQLSFDEQ 406 (1387)
Q Consensus 331 --pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~--~~v~~lh~~l~~~er 406 (1387)
++++.+.+... .....+....+.+.+..+..+++++||||+|+..++.+++.|++.+ +.+..+||.+++.+|
T Consensus 238 ~~~i~~~~~~~~~----~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 238 LPPVELELIPAPD----FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ccceEEEEEeCCc----hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 34444444211 1112223333334343434467899999999999999999998754 578899999999998
Q ss_pred hhhhccCCCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccC
Q 000621 407 FCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAG 476 (1387)
Q Consensus 407 ~~v~~~f~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaG 476 (1387)
.++. +..|||||+++++|||+|++ +||. . | .+.++|+||+||+|
T Consensus 314 ~~~~-----~~~iLVaTdv~~rGiDi~~~-~vi~-~-p------------------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERAM-----QFDILLGTSTVDVGVDFKRD-WLIF-S-A------------------RDAAAFWQRLGRLG 357 (357)
T ss_pred HHhc-----cCCEEEEecHHhcccCCCCc-eEEE-C-C------------------CCHHHHhhhcccCC
Confidence 8764 57899999999999999987 5552 2 2 23489999999998
No 75
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=4.1e-26 Score=282.97 Aligned_cols=301 Identities=13% Similarity=0.080 Sum_probs=197.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 150 DGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
...|.+.|++++..++.+++. ++++|||+|||..+...+.........+++|++||++|+.|+.+++.+..... ....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~-il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRR-LLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAM 189 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccc-ccce
Confidence 356888888888888876665 55899999999875443221111123489999999999999999998865211 1111
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCC
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD 309 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~ 309 (1387)
.+...+.. .....+|+|+|++.+.+... ..+.++++||+|||| +.....+ ..+++. .++..++++||||+.
T Consensus 190 ~~i~~g~~--~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH-~~~~~~~-~~il~~---~~~~~~~lGLTATp~ 260 (501)
T PHA02558 190 HKIYSGTA--KDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECH-LFTGKSL-TSIITK---LDNCKFKFGLTGSLR 260 (501)
T ss_pred eEEecCcc--cCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchh-cccchhH-HHHHHh---hhccceEEEEeccCC
Confidence 12222221 12457999999999976542 257899999999999 5554332 222222 234457999999985
Q ss_pred HHH-----HHHHhccCCeeeee-------cccceeEEEEecCCCCC---Cc-cchhh-------------HHHHHHHHHH
Q 000621 310 AHQ-----LSKYFYDCGISHVV-------GRNFPVDVRYVPCATAG---TS-AVASY-------------VSDVVRMVGE 360 (1387)
Q Consensus 310 ~~~-----~~~~f~~~~v~~i~-------gr~~pv~~~~~~~~~~~---~~-~~~~~-------------~~~~~~~l~~ 360 (1387)
... +..+|+.. ...+. |...++.+......... .. ....+ ...+...+..
T Consensus 261 ~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~ 339 (501)
T PHA02558 261 DGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALK 339 (501)
T ss_pred CccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 321 23344321 11111 11112211111100000 00 00001 0111122222
Q ss_pred hhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEec-chhhcCCCCCCceEE
Q 000621 361 VHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFAT-NVAETSLTIPGVKFV 438 (1387)
Q Consensus 361 i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT-~iae~GIdIp~V~~V 438 (1387)
+. ..++++|||+.+.++++.+++.|.+.+..+..+||+|+.++|..+++.| .|+..||||| +++++|+|+|++++|
T Consensus 340 ~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 340 LA--KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred HH--hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 22 3567899999999999999999999999999999999999999998888 7888899998 899999999999999
Q ss_pred EecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCe
Q 000621 439 IDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGR 482 (1387)
Q Consensus 439 Id~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~ 482 (1387)
|....++ |+..|+||+||+||.++|+
T Consensus 418 Il~~p~~------------------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 418 IFAHPSK------------------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEecCCc------------------chhhhhhhhhccccCCCCC
Confidence 9765543 4588999999999998664
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=2.7e-25 Score=276.56 Aligned_cols=313 Identities=18% Similarity=0.145 Sum_probs=200.1
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC
Q 000621 146 KRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCY 225 (1387)
Q Consensus 146 ~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~ 225 (1387)
++.-...|...|...++....+ .++.++||+|||+++..+++..... +..++|+.|++.||.|.++.+.......
T Consensus 64 ~R~lglrpydVQlig~l~l~~G---~Iaem~TGeGKTLta~Lpa~l~aL~-g~~V~VVTpn~yLA~Rdae~m~~l~~~L- 138 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQG---NIAEMKTGEGKTLTATMPLYLNALT-GKGAMLVTTNDYLAKRDAEEMGPVYEWL- 138 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCC---ceeEecCCcchHHHHHHHHHHHhhc-CCceEEeCCCHHHHHHHHHHHHHHHhhc-
Confidence 3333447776676666643332 5778999999999865555444333 4568999999999999999988776433
Q ss_pred CCccEEEecCC------C---ccccCCCcEEEEChhHH-HHHhhc-------CCCCCceeEEEEcCccccccch------
Q 000621 226 EDDSVICYPSF------S---SAQHFDSKVIYMTDHCL-LQHFMN-------DRDLSRISCIIVDEAHERSLNT------ 282 (1387)
Q Consensus 226 ~~~~vg~~~~~------~---~~~~~~~~Ivv~Tpg~L-l~~l~~-------~~~l~~l~~IIIDEaHer~~~~------ 282 (1387)
+..++..... . .....+++|+|+||+.| .+.|.. ...+.++.++||||||..++|.
T Consensus 139 -GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 139 -GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred -CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 2344432211 1 11224789999999999 444422 1257789999999999422221
Q ss_pred ---------hHHHHHHHHHHhccc--------C-----------------------------------------------
Q 000621 283 ---------DLLLALVKDLLCRRF--------D----------------------------------------------- 298 (1387)
Q Consensus 283 ---------d~l~~~lk~l~~~~~--------~----------------------------------------------- 298 (1387)
.+.......+..+.+ +
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 111111011100000 0
Q ss_pred --------------------------------------------------------------ccEEeecccCCH--HHHH
Q 000621 299 --------------------------------------------------------------LRLVIMSATADA--HQLS 314 (1387)
Q Consensus 299 --------------------------------------------------------------~kiIlmSATl~~--~~~~ 314 (1387)
.++.+||.|... +.|.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 244455555421 2233
Q ss_pred HHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCce
Q 000621 315 KYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVA 394 (1387)
Q Consensus 315 ~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v 394 (1387)
+.+ +.+++.+|.. .|+...-.++.. ..........++..+.+.+ ..+.++||||++++.++.++..|...++.+
T Consensus 378 ~iY-~l~v~~IPt~-kp~~r~d~~d~i--~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 378 ETY-SLSVVKIPTN-KPIIRIDYPDKI--YATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHh-CCCEEEcCCC-CCeeeeeCCCeE--EECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 222 3445555432 222222111111 0001112223333333333 567899999999999999999999999999
Q ss_pred EeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCC---------CceEEEecCCCccccccCCCCcccceecccC
Q 000621 395 LPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIP---------GVKFVIDSGMVKESYFEPGTGMNVLRVCRVS 464 (1387)
Q Consensus 395 ~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp---------~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS 464 (1387)
..+||.+.+.++..+...+ +| .|+||||+|+||+||| ++.+|+++..|...
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r----------------- 512 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR----------------- 512 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcH-----------------
Confidence 9999999999988887777 55 7999999999999999 99999998776543
Q ss_pred HhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 465 QSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 465 ~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
.+ .||+|||||.| ||.|+.+++.++
T Consensus 513 -id-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 513 -VD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred -HH-HHhhhcccCCCCceeEEEEEccch
Confidence 33 89999999999 999999999754
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=3.2e-26 Score=302.33 Aligned_cols=293 Identities=17% Similarity=0.125 Sum_probs=194.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
..|+..|+..++.++.++++++ +||||||||+.+...+... ...+.++++++|||+||.|+++++............+
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i-~ApTGsGKT~f~l~~~~~l-~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~ 156 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAI-IAPTGVGKTTFGLVMSLYL-AKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKI 156 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEE-EcCCCCCHHHHHHHHHHHH-HhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEE
Confidence 3799999999999887766666 6999999997533322221 1236789999999999999999999986433222111
Q ss_pred EEecCCC----cc------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccc-----------hhHHH-HH
Q 000621 231 ICYPSFS----SA------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLN-----------TDLLL-AL 288 (1387)
Q Consensus 231 g~~~~~~----~~------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~-----------~d~l~-~~ 288 (1387)
.+..... .. ....++|+|+|||+|.+++. .....++++||||||| ++++ .+|.. .+
T Consensus 157 ~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 157 LYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHH
Confidence 1111110 00 12358999999999998875 2245569999999999 5654 33421 11
Q ss_pred HHHHHhcc------------------------cCccEEeecccCCHHHHH-HHhccCCeeeeeccc---ceeEEEEecCC
Q 000621 289 VKDLLCRR------------------------FDLRLVIMSATADAHQLS-KYFYDCGISHVVGRN---FPVDVRYVPCA 340 (1387)
Q Consensus 289 lk~l~~~~------------------------~~~kiIlmSATl~~~~~~-~~f~~~~v~~i~gr~---~pv~~~~~~~~ 340 (1387)
.+.+...+ .+.+++++|||+++.... .+|.+.-.+.+.... ..+...|....
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE 314 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc
Confidence 11111111 157899999999764332 233222112222111 22334443321
Q ss_pred CCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHH---HHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCc
Q 000621 341 TAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKME---VEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGR 416 (1387)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~e---ie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~ 416 (1387)
+....+..+.... +.++||||+++.. ++.+++.|+..|+.+..+||+| .+.++.| +|+
T Consensus 315 ------------~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~ 376 (1176)
T PRK09401 315 ------------DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE 376 (1176)
T ss_pred ------------cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC
Confidence 1222333333322 3579999999777 9999999999999999999999 2345899 899
Q ss_pred eEEEEe----cchhhcCCCCCC-ceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCC
Q 000621 417 RKVIFA----TNVAETSLTIPG-VKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGR 477 (1387)
Q Consensus 417 ~kVLVa----T~iae~GIdIp~-V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR 477 (1387)
.+|||| |++++||||+|+ |+|||++|+|+...- . --...+.||.||+-.
T Consensus 377 ~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~-~-----------~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 377 VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS-L-----------EEELAPPFLLLRLLS 430 (1176)
T ss_pred CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe-c-----------cccccCHHHHHHHHh
Confidence 999999 699999999999 899999999984310 0 011457899999963
No 78
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.9e-26 Score=308.04 Aligned_cols=323 Identities=14% Similarity=0.075 Sum_probs=211.9
Q ss_pred HHHHH-hccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHh
Q 000621 143 RECKR-LEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREES 221 (1387)
Q Consensus 143 ~~l~~-~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~ 221 (1387)
+-+++ .|+ -|+..|+..++.++.++++++ +||||||||+....+.+.. ...+.++++++|||+|+.|+++++....
T Consensus 70 ~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li-~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 70 EFFEKITGF-EFWSIQKTWAKRILRGKSFSI-VAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred HHHHHhhCC-CCCHHHHHHHHHHHcCCCEEE-EEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 33444 566 599999999999999887766 6999999998422222211 1235689999999999999999999876
Q ss_pred cCCCCCccEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccc----------
Q 000621 222 RGCYEDDSVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLN---------- 281 (1387)
Q Consensus 222 ~~~~~~~~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~---------- 281 (1387)
.....+..+.+..+.... .....+|+|+|||+|.+.+..... .++++||||||| ++++
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD-~ml~~~knid~~L~ 224 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVD-AFLKASKNIDRSLQ 224 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECce-eccccccccchhhh
Confidence 433222233332222111 122489999999999877643222 679999999999 4543
Q ss_pred -hhHHHHHHH----HHH----------------------hcccCcc-EEeecccCCHH-HHHHHhccCCeeeeeccc---
Q 000621 282 -TDLLLALVK----DLL----------------------CRRFDLR-LVIMSATADAH-QLSKYFYDCGISHVVGRN--- 329 (1387)
Q Consensus 282 -~d~l~~~lk----~l~----------------------~~~~~~k-iIlmSATl~~~-~~~~~f~~~~v~~i~gr~--- 329 (1387)
.+|...+.. .+. ..+...+ ++++|||+++. ....+|.+.-.+.+....
T Consensus 225 llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~l 304 (1638)
T PRK14701 225 LLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSAL 304 (1638)
T ss_pred cCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCC
Confidence 356555543 111 1122344 56799998753 344555433223332211
Q ss_pred ceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHH---HHHHHHHhcCCCCceEeccCCCCHhhh
Q 000621 330 FPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKME---VEWACEKFDAPSAVALPFHGQLSFDEQ 406 (1387)
Q Consensus 330 ~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~e---ie~l~~~L~~~~~~v~~lh~~l~~~er 406 (1387)
..+...|.... . ... ..+.+++... +..+||||++++. ++.+++.|...|+.+..+||+ |
T Consensus 305 r~i~~~yi~~~-------~---~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R 367 (1638)
T PRK14701 305 RNIVDVYLNPE-------K---IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----N 367 (1638)
T ss_pred CCcEEEEEECC-------H---HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----H
Confidence 12333333211 0 111 2233334333 4679999999876 489999999999999999995 8
Q ss_pred hhhhccC-CCceEEEEec----chhhcCCCCCC-ceEEEecCCCcccc----ccCCCCcccceecccCHhhHHHHhcccC
Q 000621 407 FCVFKSY-PGRRKVIFAT----NVAETSLTIPG-VKFVIDSGMVKESY----FEPGTGMNVLRVCRVSQSSANQRAGRAG 476 (1387)
Q Consensus 407 ~~v~~~f-~g~~kVLVaT----~iae~GIdIp~-V~~VId~g~~k~~~----yd~~~~~~~L~~~~iS~a~~~QR~GRaG 476 (1387)
..+++.| +|+.+||||| ++++||||+|+ |+|||++|+|+-.+ |.+.... .+. .....++.||||
T Consensus 368 ~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-~~~-----~~~~~~~~~~a~ 441 (1638)
T PRK14701 368 KKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-ILG-----LLSEILKIEEEL 441 (1638)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-hhc-----chHHHHHhhhhc
Confidence 8899999 9999999999 59999999999 99999999999321 2111111 010 234567889999
Q ss_pred CCC-CCeEEEeecccccc
Q 000621 477 RTE-PGRCYRLYSKSDFE 493 (1387)
Q Consensus 477 R~~-~G~~~~L~s~~~~~ 493 (1387)
|.| ++.|+..+..++..
T Consensus 442 ~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred ccCCcchhHHHhHHHHHH
Confidence 998 88887666555543
No 79
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.8e-25 Score=275.39 Aligned_cols=318 Identities=20% Similarity=0.165 Sum_probs=206.8
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.+.++.-...|.+.|...++.++.++ |..+.||+|||+++..+++.... .+..++|+.|+++||.|.++.+.....
T Consensus 94 Ea~~R~lg~~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al-~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 94 EASGRVLGQRHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAAL-AGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHhCCCCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhh-cCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 44455556789999999999999877 66899999999987766665543 356899999999999999999998864
Q ss_pred CCCCCccEEEecCCCcc----ccCCCcEEEEChhHH-HHHhhcC--------------------------CCCCceeEEE
Q 000621 223 GCYEDDSVICYPSFSSA----QHFDSKVIYMTDHCL-LQHFMND--------------------------RDLSRISCII 271 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~~----~~~~~~Ivv~Tpg~L-l~~l~~~--------------------------~~l~~l~~II 271 (1387)
.. +..+++..+..+. ...+++|+|+|..-| ++.|... .....+.+.|
T Consensus 170 ~l--Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 AL--GLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hc--CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 33 3355554333221 234789999999766 2222211 1345678999
Q ss_pred EcCccccccch-----------------hHHHHHHHHHHhcc--------------------------------------
Q 000621 272 VDEAHERSLNT-----------------DLLLALVKDLLCRR-------------------------------------- 296 (1387)
Q Consensus 272 IDEaHer~~~~-----------------d~l~~~lk~l~~~~-------------------------------------- 296 (1387)
|||||.-.+|. +++......+....
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 99999322211 11000000000000
Q ss_pred -------------------------------------------------------------------------------c
Q 000621 297 -------------------------------------------------------------------------------F 297 (1387)
Q Consensus 297 -------------------------------------------------------------------------------~ 297 (1387)
.
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 0
Q ss_pred CccEEeecccCCHH--HHHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeC
Q 000621 298 DLRLVIMSATADAH--QLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLT 375 (1387)
Q Consensus 298 ~~kiIlmSATl~~~--~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~ 375 (1387)
=.++.+||||.... .|.+.++ ..++.+|... |......+... ..........+...+...+ ..+.++||||+
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~-l~vv~IPt~k-p~~r~~~~~~v--~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~ 481 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYG-LPVVRIPTNR-PSQRRHLPDEV--FLTAAAKWAAVAARVRELH--AQGRPVLVGTR 481 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHC-CCeEEeCCCC-CccceecCCEE--EeCHHHHHHHHHHHHHHHH--hcCCCEEEEeC
Confidence 02566777776432 2444442 3344444321 11111111100 0000112222333332222 24578999999
Q ss_pred CHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCC---Cce-----EEEecCCCccc
Q 000621 376 SKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIP---GVK-----FVIDSGMVKES 447 (1387)
Q Consensus 376 s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp---~V~-----~VId~g~~k~~ 447 (1387)
|+..++.++..|...++.+..+||.++..++..+...+ +...|+||||+|+||+||+ +|. +||++++|..
T Consensus 482 t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag-~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s- 559 (656)
T PRK12898 482 SVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAG-QRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDS- 559 (656)
T ss_pred cHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcC-CCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCC-
Confidence 99999999999999999999999997655555444433 3347999999999999999 777 9999988764
Q ss_pred cccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 448 YFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 448 ~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
...|.||+|||||.| +|.|+.+++.+|
T Consensus 560 -----------------~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 560 -----------------ARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred -----------------HHHHHHhcccccCCCCCeEEEEEechhH
Confidence 478999999999999 999999999764
No 80
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=2.1e-26 Score=293.01 Aligned_cols=323 Identities=19% Similarity=0.192 Sum_probs=226.1
Q ss_pred cccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHHccccCCCeEEEeccHHHHHH
Q 000621 134 WSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQ--LVQFLADSGIAAEQSIVCTQPRKIAAI 211 (1387)
Q Consensus 134 ~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~--i~~~ll~~~~~~~~~Ilv~~P~r~LA~ 211 (1387)
|+......+...+......| .|.++|...+.+.+++++ .|||+|||++ +|.++. ++..+|+.|...|..
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~--~Q~eaI~~~l~Gkd~fvl-mpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRP--NQLEAINATLSGKDCFVL-MPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQ 318 (941)
T ss_pred cchHHHHHHHHHhccccCCh--hHHHHHHHHHcCCceEEE-eecCCceeeEeecccccc------CCceEEeccHHHHHH
Confidence 43344445555555555554 488888877777777775 7999999985 666553 236788999999987
Q ss_pred HHHHHHHHHhcCCCCCccEEEecCC-------C--ccccCCCcEEEEChhHHHH------HhhcCCCCCceeEEEEcCcc
Q 000621 212 SLAQRVREESRGCYEDDSVICYPSF-------S--SAQHFDSKVIYMTDHCLLQ------HFMNDRDLSRISCIIVDEAH 276 (1387)
Q Consensus 212 qla~rv~~~~~~~~~~~~vg~~~~~-------~--~~~~~~~~Ivv~Tpg~Ll~------~l~~~~~l~~l~~IIIDEaH 276 (1387)
.....+.... ... ......... . .......+|+|+||+.+.. .+.......-+.++||||||
T Consensus 319 DQv~~L~~~~--I~a-~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAH 395 (941)
T KOG0351|consen 319 DQVTHLSKKG--IPA-CFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAH 395 (941)
T ss_pred HHHHhhhhcC--cce-eeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHH
Confidence 6665553221 110 000000000 0 0111257999999998753 22222223338999999999
Q ss_pred ccccch-hHHHHHH--HHHHhcccCccEEeecccCCHHHHHHHhccC----CeeeeecccceeEEEEecCCCCCCccchh
Q 000621 277 ERSLNT-DLLLALV--KDLLCRRFDLRLVIMSATADAHQLSKYFYDC----GISHVVGRNFPVDVRYVPCATAGTSAVAS 349 (1387)
Q Consensus 277 er~~~~-d~l~~~l--k~l~~~~~~~kiIlmSATl~~~~~~~~f~~~----~v~~i~gr~~pv~~~~~~~~~~~~~~~~~ 349 (1387)
|-+.|. ||...+. ..++...+.+.+|.+|||.....-.+..... +.+. .....+-.++|.......
T Consensus 396 CVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~sfnR~NL~yeV~~k~~------ 468 (941)
T KOG0351|consen 396 CVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF-KSSFNRPNLKYEVSPKTD------ 468 (941)
T ss_pred HhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee-cccCCCCCceEEEEeccC------
Confidence 988776 7777774 3444566778999999998766544444321 1111 111222333333322110
Q ss_pred hHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhc
Q 000621 350 YVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAET 428 (1387)
Q Consensus 350 ~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~ 428 (1387)
.......+..+....+.+.+||||.++.+|+.++..|+..++.+..||++|++.+|..|...| .++.+|||||-++++
T Consensus 469 -~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGM 547 (941)
T KOG0351|consen 469 -KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGM 547 (941)
T ss_pred -ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccC
Confidence 122333344445557889999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccccc
Q 000621 429 SLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFET 494 (1387)
Q Consensus 429 GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~~ 494 (1387)
|||.|||++|||+++|+.. +.|.|.+|||||.| +..|..||+..++..
T Consensus 548 GIdK~DVR~ViH~~lPks~------------------E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSLPKSF------------------EGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred CCCCCceeEEEECCCchhH------------------HHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 9999999999999999955 88999999999999 999999999886643
No 81
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=273.28 Aligned_cols=318 Identities=18% Similarity=0.211 Sum_probs=207.8
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCC
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVREESRGCYED 227 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~ 227 (1387)
...++...+|.+|..-.. ..+++|++|||+|||..+.-.++++ .+.+.++|++++|++-|..|....+...+.+ .
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~-~-- 133 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP-Y-- 133 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc-c--
Confidence 346778888888877666 6666778999999999866666654 3445689999999999998888776665422 1
Q ss_pred ccEEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCc
Q 000621 228 DSVICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDL 299 (1387)
Q Consensus 228 ~~vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~ 299 (1387)
...+...+.... .-...+|+|+||..|.+.|.+.. .|+.++++|||||| |......+..+.+.+.... ..-
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 111111111111 12357999999999998887654 57899999999999 6666555555555554433 334
Q ss_pred cEEeecccCC--HHHHHHHhccCCee-eee--------------cccceeEEE---------------------------
Q 000621 300 RLVIMSATAD--AHQLSKYFYDCGIS-HVV--------------GRNFPVDVR--------------------------- 335 (1387)
Q Consensus 300 kiIlmSATl~--~~~~~~~f~~~~v~-~i~--------------gr~~pv~~~--------------------------- 335 (1387)
|+|++|||+. .+..+++..+.-+- .+. -...|+++.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999963 33343443321000 000 000111100
Q ss_pred --------EecCC------C-----CCCc---------------------------------------------------
Q 000621 336 --------YVPCA------T-----AGTS--------------------------------------------------- 345 (1387)
Q Consensus 336 --------~~~~~------~-----~~~~--------------------------------------------------- 345 (1387)
|.... . ....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 00000 0 0000
Q ss_pred -------------------cchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC---CCCceEec------
Q 000621 346 -------------------AVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA---PSAVALPF------ 397 (1387)
Q Consensus 346 -------------------~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~---~~~~v~~l------ 397 (1387)
...+.++...+.+.+.....+..++|||+.+++.++.+...|.. .+++...+
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 00000111111222222334667999999999999999888762 22222222
Q ss_pred --cCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcc
Q 000621 398 --HGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGR 474 (1387)
Q Consensus 398 --h~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GR 474 (1387)
-.+|++.+|.++++.| .|+.+|||||+|+|.|+||+.|+.||-||..... -..+||.||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snp------------------IrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNP------------------IRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccH------------------HHHHHHhcc
Confidence 2489999999999999 9999999999999999999999999987764432 667899999
Q ss_pred cCCCCCCeEEEeeccc
Q 000621 475 AGRTEPGRCYRLYSKS 490 (1387)
Q Consensus 475 aGR~~~G~~~~L~s~~ 490 (1387)
||...|+|+.|++..
T Consensus 515 -gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTGS 529 (746)
T ss_pred -ccccCCeEEEEEcch
Confidence 999999999999943
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.6e-25 Score=277.17 Aligned_cols=315 Identities=19% Similarity=0.139 Sum_probs=204.1
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.+.++.-...|...|...++....++ +..+.||+|||+++..+++.... .+..+.++.|+++||.|.++.+.....
T Consensus 69 ea~~R~~g~~p~~vQl~~~~~l~~G~---Iaem~TGeGKTL~a~lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 69 EAAKRVLGMRPYDVQLIGALVLHEGN---IAEMQTGEGKTLTATMPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred HHHHHHhCCCCchHHHHhHHHHcCCc---eeeecCCCcchHHHHHHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44445455689999999888665443 66899999999986655554333 356899999999999999999988875
Q ss_pred CCCCCccEEEecCCCc-----cccCCCcEEEEChhHH-HHHhhcC-------CCCCceeEEEEcCccccccch-------
Q 000621 223 GCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCL-LQHFMND-------RDLSRISCIIVDEAHERSLNT------- 282 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~L-l~~l~~~-------~~l~~l~~IIIDEaHer~~~~------- 282 (1387)
.. +..+++..+... .....++|+|+||+.| .+.|... ..+..+.++||||||...+|.
T Consensus 145 ~l--Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 145 FL--GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hc--CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 43 345555443332 1224689999999998 3333221 256889999999999433322
Q ss_pred --------hHHHHHHHHHHhcc--------cCcc----------------------------------------------
Q 000621 283 --------DLLLALVKDLLCRR--------FDLR---------------------------------------------- 300 (1387)
Q Consensus 283 --------d~l~~~lk~l~~~~--------~~~k---------------------------------------------- 300 (1387)
.+.....+.+.... .+.+
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 11111111111110 0112
Q ss_pred ---------------------------------------------------------------EEeecccCCH--HHHHH
Q 000621 301 ---------------------------------------------------------------LVIMSATADA--HQLSK 315 (1387)
Q Consensus 301 ---------------------------------------------------------------iIlmSATl~~--~~~~~ 315 (1387)
+.+||.|... +.|.+
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 2222222211 01111
Q ss_pred HhccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhc--cCCCcEEEEeCCHHHHHHHHHHhcCCCCc
Q 000621 316 YFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTT--EKEGTILAFLTSKMEVEWACEKFDAPSAV 393 (1387)
Q Consensus 316 ~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~g~iLVF~~s~~eie~l~~~L~~~~~~ 393 (1387)
.+ +.+++.+|.. .|+...-.++ .+.....+....+.+.... ..+.++||||+|++.++.++..|.+.++.
T Consensus 383 ~Y-~l~v~~IPt~-kp~~r~d~~~------~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~ 454 (790)
T PRK09200 383 VY-NMEVVQIPTN-RPIIRIDYPD------KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP 454 (790)
T ss_pred Hh-CCcEEECCCC-CCcccccCCC------eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 11 1222222211 1111110000 0001112233333332221 46789999999999999999999999999
Q ss_pred eEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCC---CCce-----EEEecCCCccccccCCCCcccceecccC
Q 000621 394 ALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTI---PGVK-----FVIDSGMVKESYFEPGTGMNVLRVCRVS 464 (1387)
Q Consensus 394 v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdI---p~V~-----~VId~g~~k~~~yd~~~~~~~L~~~~iS 464 (1387)
+..+||.+...++..+...+ +| .|+||||+|+||+|| |+|. +||++++|..
T Consensus 455 ~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s------------------ 514 (790)
T PRK09200 455 HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMES------------------ 514 (790)
T ss_pred EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCC------------------
Confidence 99999999988888777776 55 799999999999999 7999 9999988764
Q ss_pred HhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 465 QSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 465 ~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
...|.||+|||||.| +|.|+.+++.++
T Consensus 515 ~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 515 RRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 488999999999999 999999998764
No 83
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=7.7e-25 Score=286.92 Aligned_cols=316 Identities=22% Similarity=0.272 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEec
Q 000621 155 YMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYP 234 (1387)
Q Consensus 155 ~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~ 234 (1387)
..+|.++......+ .+++++|||+|||.++...+.......++++++++|+++|+.|.++.+.+.++.. . ..+....
T Consensus 17 r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~-~~v~~~~ 93 (773)
T PRK13766 17 RLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-E-EKIVVFT 93 (773)
T ss_pred cHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-C-ceEEEEe
Confidence 34455555544444 4566899999999976555544333346799999999999999999998876321 1 1222222
Q ss_pred CCCcc-----ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 235 SFSSA-----QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 235 ~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
+.... ...+.+|+|+||+.+...+.... .+.++++||+|||| +.........+.+......+...+++||||+
T Consensus 94 g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 94 GEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLTASP 172 (773)
T ss_pred CCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 21111 12357999999999988776554 67889999999999 6554433344445554555567799999997
Q ss_pred C--HHHHHHHhccCC--eeeeeccc--------ceeEEEEecCCCC--------------------------C--Cc---
Q 000621 309 D--AHQLSKYFYDCG--ISHVVGRN--------FPVDVRYVPCATA--------------------------G--TS--- 345 (1387)
Q Consensus 309 ~--~~~~~~~f~~~~--v~~i~gr~--------~pv~~~~~~~~~~--------------------------~--~~--- 345 (1387)
. .+.+...+.+.. .+.+..+. .+..+.+...... . ..
T Consensus 173 ~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~ 252 (773)
T PRK13766 173 GSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDV 252 (773)
T ss_pred CCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCc
Confidence 3 333333332211 11111100 0001111000000 0 00
Q ss_pred --------------------c-----------------------------------------------------------
Q 000621 346 --------------------A----------------------------------------------------------- 346 (1387)
Q Consensus 346 --------------------~----------------------------------------------------------- 346 (1387)
.
T Consensus 253 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 253 SKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred CHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 0
Q ss_pred ------------chhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCC--------CCHhhh
Q 000621 347 ------------VASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQ--------LSFDEQ 406 (1387)
Q Consensus 347 ------------~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~--------l~~~er 406 (1387)
..+......+.+.++....+++++||||++++.++.+++.|...++.+..+||. |++.+|
T Consensus 333 ~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r 412 (773)
T PRK13766 333 RKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQ 412 (773)
T ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHH
Confidence 000000011112222222567899999999999999999998888989899886 999999
Q ss_pred hhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEE
Q 000621 407 FCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYR 485 (1387)
Q Consensus 407 ~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~ 485 (1387)
.++++.| .|+.+|||||+++++|+|+|++++||+++.+. |...|+||+||+||.++|.+|.
T Consensus 413 ~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR~GR~gR~~~~~v~~ 474 (773)
T PRK13766 413 IEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQRKGRTGRQEEGRVVV 474 (773)
T ss_pred HHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHHhcccCcCCCCEEEE
Confidence 9999999 89999999999999999999999999877643 4478999999999999999999
Q ss_pred eeccccc
Q 000621 486 LYSKSDF 492 (1387)
Q Consensus 486 L~s~~~~ 492 (1387)
|++++..
T Consensus 475 l~~~~t~ 481 (773)
T PRK13766 475 LIAKGTR 481 (773)
T ss_pred EEeCCCh
Confidence 9987653
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=6.8e-24 Score=272.74 Aligned_cols=402 Identities=19% Similarity=0.198 Sum_probs=257.7
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHHHHHH
Q 000621 141 IVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 141 ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
+..++.+.+... .|.+|.+....+.++++++|+.+||||||.++..++++.... ...+.|++.||++||....+++.+
T Consensus 59 l~~~l~~~g~~~-lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 59 LKSALVKAGIER-LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRE 137 (851)
T ss_pred HHHHHHHhcccc-ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHH
Confidence 345555555555 778888888888888888889999999999988888887544 344789999999999999999999
Q ss_pred HhcCCCCCccEEEecCCCcc------ccCCCcEEEEChhHHHHHhhcCC-----CCCceeEEEEcCccc-cccchhHHHH
Q 000621 220 ESRGCYEDDSVICYPSFSSA------QHFDSKVIYMTDHCLLQHFMNDR-----DLSRISCIIVDEAHE-RSLNTDLLLA 287 (1387)
Q Consensus 220 ~~~~~~~~~~vg~~~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~-----~l~~l~~IIIDEaHe-r~~~~d~l~~ 287 (1387)
+..........+.+.+.... ....++|+++||.||..++.... .++++++||+||+|- |.....-...
T Consensus 138 ~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ 217 (851)
T COG1205 138 LISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVAL 217 (851)
T ss_pred HHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHH
Confidence 87654433344444332221 24579999999999988665443 678899999999993 3333322333
Q ss_pred HHHHHHh----cccCccEEeecccC-CHHHHHHHhccCCeee-eecccce--eEEEEecCC--CC-CCccchhhHHHHHH
Q 000621 288 LVKDLLC----RRFDLRLVIMSATA-DAHQLSKYFYDCGISH-VVGRNFP--VDVRYVPCA--TA-GTSAVASYVSDVVR 356 (1387)
Q Consensus 288 ~lk~l~~----~~~~~kiIlmSATl-~~~~~~~~f~~~~v~~-i~gr~~p--v~~~~~~~~--~~-~~~~~~~~~~~~~~ 356 (1387)
+++++.. ...++++|.+|||+ ++..+..-+.+..... +.+...| ....+...+ .. ..............
T Consensus 218 llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 218 LLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 4444443 23479999999997 4555543333333222 3332222 122222211 10 00001111122222
Q ss_pred HHHHhhhccCCCcEEEEeCCHHHHHHHH----HHhcCCC----CceEeccCCCCHhhhhhhhccC-CCceEEEEecchhh
Q 000621 357 MVGEVHTTEKEGTILAFLTSKMEVEWAC----EKFDAPS----AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAE 427 (1387)
Q Consensus 357 ~l~~i~~~~~~g~iLVF~~s~~eie~l~----~~L~~~~----~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae 427 (1387)
.+.... ..+-++|+|+.++..++.++ ..+...+ ..+..++|+|+.++|.++...| .|+..++++||+++
T Consensus 298 ~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Ale 375 (851)
T COG1205 298 LAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALE 375 (851)
T ss_pred HHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhh
Confidence 222222 46789999999999999986 3343344 5688999999999999999999 89999999999999
Q ss_pred cCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccccccCCCC--------
Q 000621 428 TSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDFETRPLN-------- 498 (1387)
Q Consensus 428 ~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~~~~~~~-------- 498 (1387)
-||||.+++.||.+|.|-. |..++.||+|||||.+ .+..+..+..+..+.....
T Consensus 376 lgidiG~ldavi~~g~P~~-----------------s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~~ 438 (851)
T COG1205 376 LGIDIGSLDAVIAYGYPGV-----------------SVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLET 438 (851)
T ss_pred hceeehhhhhHhhcCCCCc-----------------hHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhhc
Confidence 9999999999999998652 4488999999999997 6666666665444331111
Q ss_pred --CCcchhccchHHHHH---HHHHcCCCCCCC-ccccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHH
Q 000621 499 --QEPEIHRVHLGIAVL---RILALGIRDVQG-FDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEG 563 (1387)
Q Consensus 499 --~~pEi~r~~L~~~~L---~l~~lgi~~~~~-f~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG 563 (1387)
..+|..+.+..+..+ .+.+........ .+.+. +.........+.|..-+.+...++....++.|
T Consensus 439 ~~~~~e~~~~~~~n~~~l~~hl~~~~~E~p~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~ 508 (851)
T COG1205 439 GFGPVESVRVDDNNEYLLDGHLLCADAELPLKDRELLP-SDGSLEEEIARSLVGEGQLHHENDKYRPSSRG 508 (851)
T ss_pred ccCcccccccCCCCcchhhhhHHhhCccCCccchhccc-cchhHHHHHHhhhhccceecccCCcccccccc
Confidence 233333333222211 122211111111 11111 23334556667778888887766655666666
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=2.5e-24 Score=284.86 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=185.0
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC
Q 000621 146 KRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCY 225 (1387)
Q Consensus 146 ~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~ 225 (1387)
.+.....|+..|+..++.++.+.+++ ++||||||||+.++..+... ...+.++++++|||+||.|+++.+........
T Consensus 72 ~~~~g~~p~~iQ~~~i~~il~G~d~v-i~ApTGsGKT~f~l~~~~~l-~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 72 KKAVGSEPWSIQKMWAKRVLRGDSFA-IIAPTGVGKTTFGLAMSLFL-AKKGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred HHhcCCCCcHHHHHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHHHH-HhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 33344579999999999888877655 57999999998533222221 22357899999999999999999998864322
Q ss_pred CCc-cEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccc-----------hh
Q 000621 226 EDD-SVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLN-----------TD 283 (1387)
Q Consensus 226 ~~~-~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~-----------~d 283 (1387)
... .++++.+.... ...+++|+|+|||+|.+.+..-.. +++++|||||| ++++ .+
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~--~~~~iVvDEaD-~~L~~~k~vd~il~llG 226 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP--KFDFIFVDDVD-ALLKASKNVDKLLKLLG 226 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC--CCCEEEEeChH-hhhhccccHHHHHHHcC
Confidence 111 12222222111 123489999999999987754222 89999999999 6665 33
Q ss_pred HHHHHHHH-----------------------HHhcccCcc--EEeecccCCHHHHH-HHhccCCeeeeeccc---ceeEE
Q 000621 284 LLLALVKD-----------------------LLCRRFDLR--LVIMSATADAHQLS-KYFYDCGISHVVGRN---FPVDV 334 (1387)
Q Consensus 284 ~l~~~lk~-----------------------l~~~~~~~k--iIlmSATl~~~~~~-~~f~~~~v~~i~gr~---~pv~~ 334 (1387)
|....+.. +...+.+.| ++++|||..+.... .+|...-.+.+.... ..+..
T Consensus 227 F~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~ 306 (1171)
T TIGR01054 227 FSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVD 306 (1171)
T ss_pred CCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEE
Confidence 43221111 111223334 66789995333222 333332222222211 22334
Q ss_pred EEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCH---HHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhc
Q 000621 335 RYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSK---MEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFK 411 (1387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~---~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~ 411 (1387)
.|.... .... .+.+++... +.++||||+++ +.++++++.|.+.|+.+..+||+++. .+++
T Consensus 307 ~~~~~~--------~~~~----~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~ 369 (1171)
T TIGR01054 307 VYVEDE--------DLKE----TLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYE 369 (1171)
T ss_pred EEEecc--------cHHH----HHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHH
Confidence 443221 0011 222333322 46799999999 99999999999999999999999973 6889
Q ss_pred cC-CCceEEEEe----cchhhcCCCCCC-ceEEEecCCCcc
Q 000621 412 SY-PGRRKVIFA----TNVAETSLTIPG-VKFVIDSGMVKE 446 (1387)
Q Consensus 412 ~f-~g~~kVLVa----T~iae~GIdIp~-V~~VId~g~~k~ 446 (1387)
.| +|+.+|||| |++++||||+|+ |+|||++|+|+.
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99 899999999 599999999999 899999999985
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=4.3e-24 Score=264.11 Aligned_cols=317 Identities=19% Similarity=0.124 Sum_probs=209.6
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.+..+.-...|...|....+....+. +..++||+|||+++...++-.... +..+.|++|+++||.|.++.+.....
T Consensus 47 Ea~~R~lg~~p~~vQlig~~~l~~G~---Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 47 EASKRVLGMRPFDVQLIGGIALHKGK---IAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred HHHHHHhCCCccchHHhhhhhhcCCc---eeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 44455556788888888877655443 668999999999865555322222 45789999999999999999998874
Q ss_pred CCCCCccEEEecCCCc----cccCCCcEEEEChhHH-HHHhhcC-------CCCCceeEEEEcCccccccch--------
Q 000621 223 GCYEDDSVICYPSFSS----AQHFDSKVIYMTDHCL-LQHFMND-------RDLSRISCIIVDEAHERSLNT-------- 282 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~----~~~~~~~Ivv~Tpg~L-l~~l~~~-------~~l~~l~~IIIDEaHer~~~~-------- 282 (1387)
.. +..++...+..+ .....++|+|+||+.| ++.+... ..+.++.++||||||...+|.
T Consensus 123 ~L--GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 123 FL--GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred cC--CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 43 345555433222 1223589999999999 7776554 267889999999999422211
Q ss_pred -------hHHHHHHHHHHhcc--------cC-------------------------------------------------
Q 000621 283 -------DLLLALVKDLLCRR--------FD------------------------------------------------- 298 (1387)
Q Consensus 283 -------d~l~~~lk~l~~~~--------~~------------------------------------------------- 298 (1387)
............+. .+
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 00000000000000 00
Q ss_pred ------------------------------------------------------------ccEEeecccCCH--HHHHHH
Q 000621 299 ------------------------------------------------------------LRLVIMSATADA--HQLSKY 316 (1387)
Q Consensus 299 ------------------------------------------------------------~kiIlmSATl~~--~~~~~~ 316 (1387)
.++.+||.|... +.|.+.
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 134444444421 112222
Q ss_pred hccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEe
Q 000621 317 FYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALP 396 (1387)
Q Consensus 317 f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~ 396 (1387)
+ +.+++.+|.. .|+.....++.. ..........++..+.+.+ ..+.++||||++...++.++..|.+.++.+..
T Consensus 361 Y-~l~vv~IPtn-kp~~R~d~~d~i--~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 361 Y-NLEVVVVPTN-RPVIRKDLSDLV--YKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred h-CCCEEEeCCC-CCeeeeeCCCeE--EcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 2 2444444432 222222222111 0011122233334443344 56889999999999999999999999999999
Q ss_pred ccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCC-------ceEEEecCCCccccccCCCCcccceecccCHhhH
Q 000621 397 FHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPG-------VKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSA 468 (1387)
Q Consensus 397 lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~-------V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~ 468 (1387)
+||. +.+|+..+..| .+...|+||||+|+||+||+. ..+||++.+|. |...+
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~------------------s~ri~ 494 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE------------------SRRID 494 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC------------------cHHHH
Confidence 9999 77888889889 677899999999999999998 45999988765 45889
Q ss_pred HHHhcccCCCC-CCeEEEeecccc
Q 000621 469 NQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 469 ~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
.||+|||||.| ||.+..+++.+|
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccH
Confidence 99999999999 999999999865
No 87
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=5.7e-25 Score=231.18 Aligned_cols=292 Identities=16% Similarity=0.190 Sum_probs=207.7
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccC--CCeEEEeccHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAA--EQSIVCTQPRKIAAISLA 214 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~--~~~Ilv~~P~r~LA~qla 214 (1387)
+.+.+++++-..|+..|...|.+.|+.++.+-+++. +|..|-|||..+...-+...-.. ...++|++.||+||-|+.
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmdvlc-qaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC-QAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhhe-ecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHH
Confidence 779999999999999999999999999999999888 89999999987655555543332 336889999999999997
Q ss_pred HHHHHHhcCCCCCccEEEecCCCc-----cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHH
Q 000621 215 QRVREESRGCYEDDSVICYPSFSS-----AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLAL 288 (1387)
Q Consensus 215 ~rv~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~ 288 (1387)
+....+.+..+......++.+..- ....-++|+|+|||+++....+.. .++++.+.|+|||+...-+.|...++
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDv 207 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 207 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHH
Confidence 665554432222212222222211 122368999999999999887766 89999999999999555556777777
Q ss_pred HHHHHhcccCccEEeecccCCHHH--HHHHhccCCeeeeecccceeEEEEecCCCC-CCccchhhH----HHHHHHHHHh
Q 000621 289 VKDLLCRRFDLRLVIMSATADAHQ--LSKYFYDCGISHVVGRNFPVDVRYVPCATA-GTSAVASYV----SDVVRMVGEV 361 (1387)
Q Consensus 289 lk~l~~~~~~~kiIlmSATl~~~~--~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~i 361 (1387)
..+....+.+-|++.+|||+..+. ...-|.. .|++++......- -.+....|+ .++-..+..+
T Consensus 208 QEifr~tp~~KQvmmfsatlskeiRpvC~kFmQ----------dPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 208 QEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQ----------DPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHhhcCcccceeeeeeeecchhhHHHHHhhhc----------CchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 777777778899999999986542 3333332 3444333322110 000001111 1222333444
Q ss_pred hhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCCCceEEEec
Q 000621 362 HTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 362 ~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
+....-.+++||+.+...+ + | .++ +|||++++||+||..|+.|+|+
T Consensus 278 Ld~LeFNQVvIFvKsv~Rl---------------------~----------f-~kr--~vat~lfgrgmdiervNi~~NY 323 (387)
T KOG0329|consen 278 LDVLEFNQVVIFVKSVQRL---------------------S----------F-QKR--LVATDLFGRGMDIERVNIVFNY 323 (387)
T ss_pred hhhhhhcceeEeeehhhhh---------------------h----------h-hhh--hHHhhhhccccCcccceeeecc
Confidence 4444567899999886541 0 1 123 9999999999999999999999
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
++|.+. .+|.||.|||||.| .|.++.+.+.+.
T Consensus 324 dmp~~~------------------DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 324 DMPEDS------------------DTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred CCCCCc------------------hHHHHHhhhhhccccccceeehhcchh
Confidence 998866 88999999999999 899999988754
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=259.28 Aligned_cols=420 Identities=18% Similarity=0.180 Sum_probs=267.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc---c-------CCCeEEEeccHHHHHHHHHHHHHHHhcCCC
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI---A-------AEQSIVCTQPRKIAAISLAQRVREESRGCY 225 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~---~-------~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~ 225 (1387)
+|..-.-.++.+..++++|||||+|||-.++.-+++..- . ...+|++++|.+.|+..+...+++.+...
T Consensus 313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~- 391 (1674)
T KOG0951|consen 313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL- 391 (1674)
T ss_pred HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc-
Confidence 466666677788899999999999999876665654311 1 12389999999999999999888876433
Q ss_pred CCccEEEecCCCc---cccCCCcEEEEChhHHHHHhhcCC---CCCceeEEEEcCccccccchh---HHHHH----HHHH
Q 000621 226 EDDSVICYPSFSS---AQHFDSKVIYMTDHCLLQHFMNDR---DLSRISCIIVDEAHERSLNTD---LLLAL----VKDL 292 (1387)
Q Consensus 226 ~~~~vg~~~~~~~---~~~~~~~Ivv~Tpg~Ll~~l~~~~---~l~~l~~IIIDEaHer~~~~d---~l~~~----lk~l 292 (1387)
+..|+-..+... ..-..|+|+++||+.---.-.++. ..+-++++||||.| ++..+ .+..+ .+..
T Consensus 392 -GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 392 -GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHh
Confidence 334554333322 233579999999997422222222 44567999999999 23222 22222 2222
Q ss_pred HhcccCccEEeecccC-CHHHHHHHhccC--Ceeee--ecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCC
Q 000621 293 LCRRFDLRLVIMSATA-DAHQLSKYFYDC--GISHV--VGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKE 367 (1387)
Q Consensus 293 ~~~~~~~kiIlmSATl-~~~~~~~~f~~~--~v~~i--~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 367 (1387)
.......+++++|||+ |-+..+.|+.-. .++.. .-|.-|+...|.-... ...........-.....+......
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~e--k~~~~~~qamNe~~yeKVm~~agk 546 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITE--KKPLKRFQAMNEACYEKVLEHAGK 546 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecccc--CCchHHHHHHHHHHHHHHHHhCCC
Confidence 2234578999999997 456666655422 22333 2344455555554322 111111111111122334555566
Q ss_pred CcEEEEeCCHHHHHHHHHHhcC-------------------------------------CCCceEeccCCCCHhhhhhhh
Q 000621 368 GTILAFLTSKMEVEWACEKFDA-------------------------------------PSAVALPFHGQLSFDEQFCVF 410 (1387)
Q Consensus 368 g~iLVF~~s~~eie~l~~~L~~-------------------------------------~~~~v~~lh~~l~~~er~~v~ 410 (1387)
+++|||+.+++++-+.|+.++. ..+.+..+|+||+..+|..+.
T Consensus 547 ~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~E 626 (1674)
T KOG0951|consen 547 NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVE 626 (1674)
T ss_pred CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHH
Confidence 9999999999999888877652 124578899999999999999
Q ss_pred ccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-----CCeEE
Q 000621 411 KSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-----PGRCY 484 (1387)
Q Consensus 411 ~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-----~G~~~ 484 (1387)
+.| .|.++|+|+|..+++|++.|.-+++|-- ...|||.+|.- .+.|.-+.+||.|||||.+ .|..+
T Consensus 627 dLf~~g~iqvlvstatlawgvnlpahtViikg----tqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegiii 698 (1674)
T KOG0951|consen 627 DLFADGHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGIII 698 (1674)
T ss_pred HHHhcCceeEEEeehhhhhhcCCCcceEEecC----ccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceeec
Confidence 999 8999999999999999999988887742 45899998753 2468899999999999984 45555
Q ss_pred Eeecccccc-c-CCC-CCCcchhccchHHHHHHHHHcCCCCCCCc-cc----------c-------------CCCc----
Q 000621 485 RLYSKSDFE-T-RPL-NQEPEIHRVHLGIAVLRILALGIRDVQGF-DF----------I-------------DAPS---- 533 (1387)
Q Consensus 485 ~L~s~~~~~-~-~~~-~~~pEi~r~~L~~~~L~l~~lgi~~~~~f-~~----------l-------------d~P~---- 533 (1387)
.=+++-.|. + |.+ .++++-.-..|...+-.-+.+|+.....- +| + |++.
T Consensus 699 t~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r 778 (1674)
T KOG0951|consen 699 TDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRR 778 (1674)
T ss_pred cCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHH
Confidence 444444443 1 222 23333333334333333334444322110 11 1 1121
Q ss_pred HHHHHHHHHHHHHcCceec--cCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchH
Q 000621 534 AKAIEMAIRNLVQLGAIKL--NNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGR 589 (1387)
Q Consensus 534 ~~~l~~al~~L~~lgal~~--~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~ 589 (1387)
.+.+..|.-.|...|.|.. ..+....|.+|+..+.+.+.-......-.....-|.+
T Consensus 779 ~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~ 836 (1674)
T KOG0951|consen 779 ADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSE 836 (1674)
T ss_pred hhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhcc
Confidence 1556678888999998853 3346789999999999999776665555555555544
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=6.2e-24 Score=250.82 Aligned_cols=321 Identities=19% Similarity=0.202 Sum_probs=235.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 150 DGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
+..-+...|...+..+..++.++|+|-|.+|||.++--.+.. .+..+.+|++|.|-++|..|-++.+.++++.
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~-sLr~kQRVIYTSPIKALSNQKYREl~~EF~D------ 198 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM-SLREKQRVIYTSPIKALSNQKYRELLEEFKD------ 198 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHH-HHHhcCeEEeeChhhhhcchhHHHHHHHhcc------
Confidence 334456678888889999999999999999999865444433 3444679999999999999999999999843
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
||... ++-...+.+..+|||+++|-.+|-++. -+..+..||+||+| .+-|.+-..-....+..++++.+.+++|||+
T Consensus 199 VGLMT-GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 199 VGLMT-GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred cceee-cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccC
Confidence 33322 233345778999999999999987766 78899999999999 4444333332333344567889999999996
Q ss_pred -CHHHHHHHhc-----cCCeeeeecccceeEEEEecCCCCCCcc--------chh-------------------------
Q 000621 309 -DAHQLSKYFY-----DCGISHVVGRNFPVDVRYVPCATAGTSA--------VAS------------------------- 349 (1387)
Q Consensus 309 -~~~~~~~~f~-----~~~v~~i~gr~~pv~~~~~~~~~~~~~~--------~~~------------------------- 349 (1387)
++..|++|.. .|.++...-|..|...+..|....+-.. ..+
T Consensus 277 PNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~ 356 (1041)
T KOG0948|consen 277 PNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKG 356 (1041)
T ss_pred CCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccc
Confidence 6788999985 3667777778888887755532210000 000
Q ss_pred ----------hHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCC---------------------------
Q 000621 350 ----------YVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSA--------------------------- 392 (1387)
Q Consensus 350 ----------~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~--------------------------- 392 (1387)
--.++.+.+..+.. ....++|||+-++++|+..|-.+.+..+
T Consensus 357 ~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~L 435 (1041)
T KOG0948|consen 357 RKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDREL 435 (1041)
T ss_pred ccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccc
Confidence 00112223332332 3456899999999999999887754211
Q ss_pred ------------ceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccce
Q 000621 393 ------------VALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLR 459 (1387)
Q Consensus 393 ------------~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~ 459 (1387)
.+..+||||-|--++-|.-.| .|-.|+|+||-+++.|+|.|.-++|.-. . ..||.. .
T Consensus 436 Pqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~-~---rKfDG~------~ 505 (1041)
T KOG0948|consen 436 PQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTA-V---RKFDGK------K 505 (1041)
T ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEee-c---cccCCc------c
Confidence 266789999999998888889 8999999999999999999977666532 2 233332 3
Q ss_pred ecccCHhhHHHHhcccCCCC---CCeEEEeeccc
Q 000621 460 VCRVSQSSANQRAGRAGRTE---PGRCYRLYSKS 490 (1387)
Q Consensus 460 ~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 490 (1387)
-.|+|-.+|+|++|||||.| .|.|+.++.+.
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 46999999999999999998 89999999864
No 90
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.4e-22 Score=252.53 Aligned_cols=301 Identities=16% Similarity=0.130 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEec
Q 000621 157 YRQDILRRIYGE--QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYP 234 (1387)
Q Consensus 157 q~~~i~~~l~~~--~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~ 234 (1387)
|++++-..+.++ +..+|+.|||+|||++....+... .+++||++|+.+|+.|+.+.+.+.... . ...++.+.
T Consensus 260 Q~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l-~-~~~I~~~t 333 (732)
T TIGR00603 260 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTI-D-DSQICRFT 333 (732)
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCC-C-CceEEEEe
Confidence 444444444333 355667899999999877655433 357899999999999999999987421 1 12344333
Q ss_pred CCCcc-ccCCCcEEEEChhHHHHHhhcC-------CCC--CceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 235 SFSSA-QHFDSKVIYMTDHCLLQHFMND-------RDL--SRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 235 ~~~~~-~~~~~~Ivv~Tpg~Ll~~l~~~-------~~l--~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
+.... ......|+|+|..++....... ..+ ..+++||+|||| +.....+. .++.. ......+++
T Consensus 334 g~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lpA~~fr-~il~~----l~a~~RLGL 407 (732)
T TIGR00603 334 SDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVPAAMFR-RVLTI----VQAHCKLGL 407 (732)
T ss_pred cCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-cccHHHHH-HHHHh----cCcCcEEEE
Confidence 32221 1224789999999886432111 122 467899999999 55433222 12222 233457999
Q ss_pred cccCCH-----HHHHHHhccCCeeeee-------cccceeEEE--EecCCCC-----------CCccchhhHHHHHHHHH
Q 000621 305 SATADA-----HQLSKYFYDCGISHVV-------GRNFPVDVR--YVPCATA-----------GTSAVASYVSDVVRMVG 359 (1387)
Q Consensus 305 SATl~~-----~~~~~~f~~~~v~~i~-------gr~~pv~~~--~~~~~~~-----------~~~~~~~~~~~~~~~l~ 359 (1387)
|||+.- ..+..++ +..++... |..-|+... +.+-... ...........+...+.
T Consensus 408 TATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~ 486 (732)
T TIGR00603 408 TATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQ 486 (732)
T ss_pred eecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHH
Confidence 999731 1232233 33333221 322233221 1111000 00000000112233333
Q ss_pred Hhhhc--cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-C-CceEEEEecchhhcCCCCCCc
Q 000621 360 EVHTT--EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-P-GRRKVIFATNVAETSLTIPGV 435 (1387)
Q Consensus 360 ~i~~~--~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~-g~~kVLVaT~iae~GIdIp~V 435 (1387)
.+... ..+.++||||.....++.++..|. +..+||++++.+|.++++.| . +..++||+|+++.+|||+|++
T Consensus 487 ~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a 561 (732)
T TIGR00603 487 FLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEA 561 (732)
T ss_pred HHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCC
Confidence 33332 367899999999999999999884 34589999999999999999 5 477999999999999999999
Q ss_pred eEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCC-CeE-------EEeeccccc
Q 000621 436 KFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEP-GRC-------YRLYSKSDF 492 (1387)
Q Consensus 436 ~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~-G~~-------~~L~s~~~~ 492 (1387)
++||....+. -|+.+|+||+||++|.++ |.+ |.|++++..
T Consensus 562 ~vvI~~s~~~-----------------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 562 NVLIQISSHY-----------------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CEEEEeCCCC-----------------CCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999865431 266899999999999974 343 888887643
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.3e-22 Score=241.91 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=222.1
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcC-----CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHH
Q 000621 141 IVRECKRLEDGLPIYMYRQDILRRIYGE-----QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQ 215 (1387)
Q Consensus 141 ll~~l~~~~~~lP~~~q~~~i~~~l~~~-----~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~ 215 (1387)
+++.+.+.-...++..|+..+-++..+- -.=+++|.-|||||..+...++.. ...+.++...+||-+||.|.+.
T Consensus 251 l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 251 LLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYE 329 (677)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHH
Confidence 4444444334455778888777776431 234568999999999876666554 4557789999999999999999
Q ss_pred HHHHHhcCCCCCccEEEecCCCcc----------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHH
Q 000621 216 RVREESRGCYEDDSVICYPSFSSA----------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLL 285 (1387)
Q Consensus 216 rv~~~~~~~~~~~~vg~~~~~~~~----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l 285 (1387)
.+.+.+.... ..|+...+.... .+...+|+|+|...+ +.+-.+.++.++||||=|. |.
T Consensus 330 ~~~~~l~~~~--i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHR------FG 397 (677)
T COG1200 330 SLRKWLEPLG--IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHR------FG 397 (677)
T ss_pred HHHHHhhhcC--CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEecccc------cc
Confidence 9999985433 235543332211 234589999995543 3444899999999999993 33
Q ss_pred HHHHHHHHhccc-CccEEeecccCCHHHHH-HHhccCCe---eeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHH
Q 000621 286 LALVKDLLCRRF-DLRLVIMSATADAHQLS-KYFYDCGI---SHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGE 360 (1387)
Q Consensus 286 ~~~lk~l~~~~~-~~kiIlmSATl~~~~~~-~~f~~~~v---~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (1387)
..--..+..+.. ...++.||||+-+..++ ..|++..+ -..|.-..|+..+..+... ...+++.+..
T Consensus 398 V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~---------~~~v~e~i~~ 468 (677)
T COG1200 398 VHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHER---------RPEVYERIRE 468 (677)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecccc---------HHHHHHHHHH
Confidence 333334444555 67899999999888887 45555443 3344445789888887643 3334444433
Q ss_pred hhhccCCCcEEEEeCCHHHHH--------HHHHHhcC--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcC
Q 000621 361 VHTTEKEGTILAFLTSKMEVE--------WACEKFDA--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETS 429 (1387)
Q Consensus 361 i~~~~~~g~iLVF~~s~~eie--------~l~~~L~~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~G 429 (1387)
-+ ..+.++.+.||-.++.+ .+++.|+. ++..+..+||.|+++++.++++.| +|+.+|||||.+.|.|
T Consensus 469 ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 469 EI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 33 46889999999877654 44555553 467799999999999999999999 8999999999999999
Q ss_pred CCCCCceEEEecCCCccccccCCC-CcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccc
Q 000621 430 LTIPGVKFVIDSGMVKESYFEPGT-GMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 430 IdIp~V~~VId~g~~k~~~yd~~~-~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~ 490 (1387)
||+|+.++.|- +|+++ |+ ++..|-.||+||-+ ++.|+.+|.+.
T Consensus 547 VdVPnATvMVI--------e~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 547 VDVPNATVMVI--------ENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred ccCCCCeEEEE--------echhhhhH----------HHHHHhccccCCCCcceEEEEEeCCC
Confidence 99999998873 23322 33 66789999999987 99999999875
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=2.9e-22 Score=255.33 Aligned_cols=311 Identities=19% Similarity=0.202 Sum_probs=197.5
Q ss_pred CcHHHHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 153 PIYMYRQDILRRIYG--EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 153 P~~~q~~~i~~~l~~--~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
+...|++++..+..+ +.++++.|+||||||.++...+.+. ...++++++++|+++|+.|+++++.+.++. .+
T Consensus 145 Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~-----~v 218 (679)
T PRK05580 145 LNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGA-----PV 218 (679)
T ss_pred CCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCC-----CE
Confidence 455677666666553 5678889999999999877665443 334678999999999999999999987631 23
Q ss_pred EEec-CCCcc---------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHH----HHHHHHHhcc
Q 000621 231 ICYP-SFSSA---------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLL----ALVKDLLCRR 296 (1387)
Q Consensus 231 g~~~-~~~~~---------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~----~~lk~l~~~~ 296 (1387)
.... ..... .....+|+|+|++.+. ..+.++++|||||+|+-+...+-.. .-+.......
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 2222 21111 1235799999998875 2478899999999996554432111 0111222345
Q ss_pred cCccEEeecccCCHHHHHHHhcc-CCeeeeeccc----ceeEEEEecCCCC-CCccchhhHHHHHHHHHHhhhccCCCcE
Q 000621 297 FDLRLVIMSATADAHQLSKYFYD-CGISHVVGRN----FPVDVRYVPCATA-GTSAVASYVSDVVRMVGEVHTTEKEGTI 370 (1387)
Q Consensus 297 ~~~kiIlmSATl~~~~~~~~f~~-~~v~~i~gr~----~pv~~~~~~~~~~-~~~~~~~~~~~~~~~l~~i~~~~~~g~i 370 (1387)
.+.++|++|||+..+.+.....+ ...+....+. .| .+........ .............+.+.+.+ ..+.++
T Consensus 293 ~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qv 369 (679)
T PRK05580 293 ENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQV 369 (679)
T ss_pred cCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeE
Confidence 67899999999998887664432 2223333221 22 2222221000 00000011223333333333 456689
Q ss_pred EEEeCCHH------------------------------------------------------------HHHHHHHHhcC-
Q 000621 371 LAFLTSKM------------------------------------------------------------EVEWACEKFDA- 389 (1387)
Q Consensus 371 LVF~~s~~------------------------------------------------------------eie~l~~~L~~- 389 (1387)
|||+|.+. .++++++.|.+
T Consensus 370 ll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~ 449 (679)
T PRK05580 370 LLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL 449 (679)
T ss_pred EEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh
Confidence 99988632 34555566654
Q ss_pred -CCCceEeccCCCCH--hhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEE--ecCCCccccccCCCCcccceeccc
Q 000621 390 -PSAVALPFHGQLSF--DEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVI--DSGMVKESYFEPGTGMNVLRVCRV 463 (1387)
Q Consensus 390 -~~~~v~~lh~~l~~--~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VI--d~g~~k~~~yd~~~~~~~L~~~~i 463 (1387)
++..+..+|++++. ++++++++.| +|+.+|||+|+++++|+|+|+|+.|+ |.+.+-.. -|-+.+-.
T Consensus 450 fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~-pdfra~Er------- 521 (679)
T PRK05580 450 FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS-PDFRASER------- 521 (679)
T ss_pred CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC-CccchHHH-------
Confidence 47789999999874 5688999999 89999999999999999999999985 55443211 00001111
Q ss_pred CHhhHHHHhcccCCCC-CCeEEEe
Q 000621 464 SQSSANQRAGRAGRTE-PGRCYRL 486 (1387)
Q Consensus 464 S~a~~~QR~GRaGR~~-~G~~~~L 486 (1387)
.-..|.|++|||||.+ +|.|+..
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEE
Confidence 1267899999999976 8988853
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=243.71 Aligned_cols=322 Identities=15% Similarity=0.151 Sum_probs=224.9
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDD 228 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~ 228 (1387)
.+..-+...|++.+..+..++.++|.|+|.+|||..+-..+.- ......+.++|.|-++|..|-++.+++.++.
T Consensus 293 ~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq~h~TR~iYTSPIKALSNQKfRDFk~tF~D----- 366 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQKHMTRTIYTSPIKALSNQKFRDFKETFGD----- 366 (1248)
T ss_pred hCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HHhhccceEecchhhhhccchHHHHHHhccc-----
Confidence 3444455667777778888888888999999999875433322 2334679999999999999999999988743
Q ss_pred cEEEecCCCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 229 SVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 229 ~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
+| ...++....+.+.+++||+++|-.+|-+.. .+.++..||+||+| ..-|.+-..-....+...++++++|++|||
T Consensus 367 -vg-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 367 -VG-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred -cc-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-ecccccccccceeeeeeccccceEEEEecc
Confidence 22 233445566789999999999999997766 78899999999999 333322222223445557889999999999
Q ss_pred C-CHHHHHHHhccC---Ceeee--ecccceeEEEEecCCCC---------------------C-----------------
Q 000621 308 A-DAHQLSKYFYDC---GISHV--VGRNFPVDVRYVPCATA---------------------G----------------- 343 (1387)
Q Consensus 308 l-~~~~~~~~f~~~---~v~~i--~gr~~pv~~~~~~~~~~---------------------~----------------- 343 (1387)
. +...|++|.+.. .+..+ ..|..|.+.++...... .
T Consensus 444 VPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~ 523 (1248)
T KOG0947|consen 444 VPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGG 523 (1248)
T ss_pred CCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccc
Confidence 5 678899999753 23333 34555555443222100 0
Q ss_pred -------------Cc-c---chh--hH--HHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCC-----------
Q 000621 344 -------------TS-A---VAS--YV--SDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPS----------- 391 (1387)
Q Consensus 344 -------------~~-~---~~~--~~--~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~----------- 391 (1387)
.+ . ... .- .....++.++. ...--+++|||-+++.|++.++.|...+
T Consensus 524 rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~-k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~ 602 (1248)
T KOG0947|consen 524 RGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR-KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVH 602 (1248)
T ss_pred ccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh-hcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHH
Confidence 00 0 000 00 01233333332 3455689999999999999998885311
Q ss_pred ----------------------------CceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecC
Q 000621 392 ----------------------------AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSG 442 (1387)
Q Consensus 392 ----------------------------~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g 442 (1387)
-.++.+|||+-|--++-|...| .|-.|||+||-++++|+|.|.-.+|+++
T Consensus 603 lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S- 681 (1248)
T KOG0947|consen 603 LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS- 681 (1248)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-
Confidence 1267799999999999998999 8999999999999999999988777764
Q ss_pred CCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeeccc
Q 000621 443 MVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKS 490 (1387)
Q Consensus 443 ~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 490 (1387)
+.| .|... .......+|.|++|||||.| .|.++.+....
T Consensus 682 l~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 682 LRK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred hhh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 333 11111 12345689999999999998 79888887654
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=6.5e-22 Score=253.36 Aligned_cols=301 Identities=16% Similarity=0.165 Sum_probs=181.1
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc-ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG-IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
.|.+.|+. +.....+...++|.||||+|||.+++.++.... .....++++..||++++.++++|+.+..........+
T Consensus 286 ~p~p~Q~~-~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 286 QPRQLQTL-VDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CChHHHHH-HHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 56555554 333334577899999999999998766554321 2224589999999999999999998643211111122
Q ss_pred EEecCCC---------------------------------ccccCCCcEEEEChhHHHHHhhcCC--CCCc----eeEEE
Q 000621 231 ICYPSFS---------------------------------SAQHFDSKVIYMTDHCLLQHFMNDR--DLSR----ISCII 271 (1387)
Q Consensus 231 g~~~~~~---------------------------------~~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~----l~~II 271 (1387)
+...+.. .+..--..|+|+|...++......+ .+.. -++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 2211100 0000126899999988775443332 2222 26899
Q ss_pred EcCccccccchh-HHHHHHHHHHhcccCccEEeecccCCHHHHHHHhc---cCCeeeeecccceeEE------------E
Q 000621 272 VDEAHERSLNTD-LLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFY---DCGISHVVGRNFPVDV------------R 335 (1387)
Q Consensus 272 IDEaHer~~~~d-~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~---~~~v~~i~gr~~pv~~------------~ 335 (1387)
|||+|.-...+. ++..+++.+.. .+.++|+||||++.....+++. ..... .....||.-. .
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccccceeeecc
Confidence 999994333222 23333443322 3578999999998755433332 11000 0011122110 0
Q ss_pred EecCCCCCCcc--c-----h--hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCC---CceEeccCCCCH
Q 000621 336 YVPCATAGTSA--V-----A--SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPS---AVALPFHGQLSF 403 (1387)
Q Consensus 336 ~~~~~~~~~~~--~-----~--~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~---~~v~~lh~~l~~ 403 (1387)
..+........ . . ......+..+.... ..++++||||||++.++.+++.|++.. ..+..+||.++.
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~ 599 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTL 599 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCH
Confidence 00000000000 0 0 00122333332222 467899999999999999999998643 679999999999
Q ss_pred hhhh----hhhccC--CCc---eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcc
Q 000621 404 DEQF----CVFKSY--PGR---RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGR 474 (1387)
Q Consensus 404 ~er~----~v~~~f--~g~---~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GR 474 (1387)
.+|. ++++.| +|+ .+|||||+++|+|||| +++++|..-. +.++++||+||
T Consensus 600 ~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla--------------------PidsLiQRaGR 658 (878)
T PRK09694 600 NDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC--------------------PVDLLFQRLGR 658 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC--------------------CHHHHHHHHhc
Confidence 9984 456667 354 4799999999999999 5788885322 23789999999
Q ss_pred cCCCC
Q 000621 475 AGRTE 479 (1387)
Q Consensus 475 aGR~~ 479 (1387)
+||.+
T Consensus 659 ~~R~~ 663 (878)
T PRK09694 659 LHRHH 663 (878)
T ss_pred cCCCC
Confidence 99975
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=4.3e-22 Score=251.74 Aligned_cols=327 Identities=17% Similarity=0.159 Sum_probs=234.0
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC
Q 000621 146 KRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCY 225 (1387)
Q Consensus 146 ~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~ 225 (1387)
...++.++ ..|++...+|..++.++++||||||||...--++.. ....+.++++|.|.++|..|.+..+.+.++..
T Consensus 114 ~~~~F~LD--~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~-al~~~qrviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 114 REYPFELD--PFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIAL-ALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred HhCCCCcC--HHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHH-HHHcCCceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 33444444 456666778888888888999999999864433332 23345679999999999999999999988543
Q ss_pred CCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 226 EDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 226 ~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
...+|...+ +-...+++.++|||+++|-+++..+. .+.++..||+||+| .+-+.+-.......+...+.++++|+|
T Consensus 190 -~~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~~v~L 266 (1041)
T COG4581 190 -ADMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVRFVFL 266 (1041)
T ss_pred -hhhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-eccccccchhHHHHHHhcCCCCcEEEE
Confidence 234455444 33445789999999999999997774 89999999999999 555555555555566677888999999
Q ss_pred cccC-CHHHHHHHhc-----cCCeeeeecccceeEEEEecCCCC-----CCc--cchhhHHH------------------
Q 000621 305 SATA-DAHQLSKYFY-----DCGISHVVGRNFPVDVRYVPCATA-----GTS--AVASYVSD------------------ 353 (1387)
Q Consensus 305 SATl-~~~~~~~~f~-----~~~v~~i~gr~~pv~~~~~~~~~~-----~~~--~~~~~~~~------------------ 353 (1387)
|||. ++..|+.|+. .+.++....|..|...++.....- ... ....+...
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 9996 7899999997 344566667777777776655210 000 00000000
Q ss_pred --------------------HHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC------------------------
Q 000621 354 --------------------VVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA------------------------ 389 (1387)
Q Consensus 354 --------------------~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~------------------------ 389 (1387)
....+.. +.....-++|+|+-++..|+..+..+..
T Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~iv~~-l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 347 VGRYARRTKALRGSAKGPAGRPEIVNK-LDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred cccccccccccCCcccccccchHHHhh-hhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 0011111 1123456899999999999988776642
Q ss_pred ----CCC-------------ceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccC
Q 000621 390 ----PSA-------------VALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEP 451 (1387)
Q Consensus 390 ----~~~-------------~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~ 451 (1387)
.++ .+..+|++|=+..+..+...| .|-.+|++||.+++.|+|.|. +.|+-+++.|-.
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~d---- 500 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFD---- 500 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEec----
Confidence 111 145689999999999999999 899999999999999999995 555555665522
Q ss_pred CCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeeccc
Q 000621 452 GTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKS 490 (1387)
Q Consensus 452 ~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~ 490 (1387)
.-...|+|..+|.|++|||||.| .|.++.+.++.
T Consensus 501 -----G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 501 -----GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred -----CCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 11235789999999999999998 79988886654
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.8e-22 Score=246.95 Aligned_cols=288 Identities=20% Similarity=0.285 Sum_probs=185.7
Q ss_pred EEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC-CCcc---------ccC
Q 000621 173 LIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS-FSSA---------QHF 242 (1387)
Q Consensus 173 I~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~-~~~~---------~~~ 242 (1387)
+.|+||||||.++...+... ...++++++++|+++|+.|+++++.+.++. .+....+ .... ...
T Consensus 2 L~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~-----~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGS-----QVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCC-----cEEEEECCCCHHHHHHHHHHHHcC
Confidence 57999999999876665433 344678999999999999999999987631 2222222 1111 123
Q ss_pred CCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHH----HHHHHhcccCccEEeecccCCHHHHHHHhc
Q 000621 243 DSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLAL----VKDLLCRRFDLRLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~----lk~l~~~~~~~kiIlmSATl~~~~~~~~f~ 318 (1387)
..+|+|+|+..+.. .+.++++|||||+|+-+...+-...+ +..+.....+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999987752 47789999999999655443211110 122233456889999999999888776543
Q ss_pred cC-Ceeeee----cccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHH--------------
Q 000621 319 DC-GISHVV----GRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKME-------------- 379 (1387)
Q Consensus 319 ~~-~v~~i~----gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~e-------------- 379 (1387)
+. .....+ +...| .+.+........ .........+.+.+.+ ..++++|||+|++.-
T Consensus 150 g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~--~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~ 224 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPP-EVKLIDMRKEPR--QSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILC 224 (505)
T ss_pred CCeEEeechhhhcCCCCC-eEEEEecccccc--cCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccC
Confidence 32 122222 22222 222222111000 0112233444444433 456799999887642
Q ss_pred ----------------------------------------------HHHHHHHhcC--CCCceEeccCCCCHhhh--hhh
Q 000621 380 ----------------------------------------------VEWACEKFDA--PSAVALPFHGQLSFDEQ--FCV 409 (1387)
Q Consensus 380 ----------------------------------------------ie~l~~~L~~--~~~~v~~lh~~l~~~er--~~v 409 (1387)
++++.+.|.+ ++..+..+|++++...+ ..+
T Consensus 225 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 225 CPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred CCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHH
Confidence 4666666665 37789999999987765 889
Q ss_pred hccC-CCceEEEEecchhhcCCCCCCceEEE--ecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEE
Q 000621 410 FKSY-PGRRKVIFATNVAETSLTIPGVKFVI--DSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYR 485 (1387)
Q Consensus 410 ~~~f-~g~~kVLVaT~iae~GIdIp~V~~VI--d~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~ 485 (1387)
++.| +|+.+|||+|+++++|+|+|+|+.|+ |.+..-. -|. +....-.-..+.|++|||||.+ +|.++.
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~---~pd-----~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLH---SPD-----FRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCccccc---Ccc-----cchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 9999 89999999999999999999999885 5543210 010 0000011267899999999976 898873
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.8e-21 Score=243.87 Aligned_cols=315 Identities=19% Similarity=0.177 Sum_probs=192.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
+....+--+++-.+.=++--+..++||+|||+++...++..... +..+.|+.|+++||.|.++.+....... +..++
T Consensus 79 lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~~V~VvTpn~yLA~qd~e~m~~l~~~l--GLtv~ 155 (896)
T PRK13104 79 LGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GRGVHIVTVNDYLAKRDSQWMKPIYEFL--GLTVG 155 (896)
T ss_pred cCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHhccc--CceEE
Confidence 33333444455555445555668999999999866666544433 4568899999999999999999887443 34555
Q ss_pred EecCCCcc----ccCCCcEEEEChhHH-HHHhhcCC--CC-----CceeEEEEcCccccccch---------------hH
Q 000621 232 CYPSFSSA----QHFDSKVIYMTDHCL-LQHFMNDR--DL-----SRISCIIVDEAHERSLNT---------------DL 284 (1387)
Q Consensus 232 ~~~~~~~~----~~~~~~Ivv~Tpg~L-l~~l~~~~--~l-----~~l~~IIIDEaHer~~~~---------------d~ 284 (1387)
+..+.... ....++|+|+|||.| +++|.... .+ ..+.++||||||...+|. +.
T Consensus 156 ~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~ 235 (896)
T PRK13104 156 VIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSEL 235 (896)
T ss_pred EEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHH
Confidence 54333221 223689999999999 88876653 22 589999999999433322 12
Q ss_pred HHHHH---HHHHhc-----------ccCccEEeeccc--------C-------------CHHH----------H-HHH-h
Q 000621 285 LLALV---KDLLCR-----------RFDLRLVIMSAT--------A-------------DAHQ----------L-SKY-F 317 (1387)
Q Consensus 285 l~~~l---k~l~~~-----------~~~~kiIlmSAT--------l-------------~~~~----------~-~~~-f 317 (1387)
+.... +.+... ...-+.+.+|-. + +... + +.+ |
T Consensus 236 y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf 315 (896)
T PRK13104 236 YIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMF 315 (896)
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHh
Confidence 22111 211111 011223333322 0 0000 0 011 1
Q ss_pred c--------cCCeeeee---cc-----cce------------e-------------------------------------
Q 000621 318 Y--------DCGISHVV---GR-----NFP------------V------------------------------------- 332 (1387)
Q Consensus 318 ~--------~~~v~~i~---gr-----~~p------------v------------------------------------- 332 (1387)
. +..++.+. || .++ |
T Consensus 316 ~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~E 395 (896)
T PRK13104 316 HRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYE 395 (896)
T ss_pred cCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHH
Confidence 0 01111111 11 111 0
Q ss_pred -------EEEEecCCCC-----C----CccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEe
Q 000621 333 -------DVRYVPCATA-----G----TSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALP 396 (1387)
Q Consensus 333 -------~~~~~~~~~~-----~----~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~ 396 (1387)
.+...|.... . ..........+++.+.+.+ ..+.++||||+|++.++.++..|...++.+..
T Consensus 396 f~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~v 473 (896)
T PRK13104 396 FQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG--VRKQPVLVGTVSIEASEFLSQLLKKENIKHQV 473 (896)
T ss_pred HHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEe
Confidence 0000110000 0 0001112223344444444 57899999999999999999999999999999
Q ss_pred ccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCC---------------------------------c-----eE
Q 000621 397 FHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPG---------------------------------V-----KF 437 (1387)
Q Consensus 397 lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~---------------------------------V-----~~ 437 (1387)
|||.+...++..+.+.| +| .|+||||+|+||+||.= | -+
T Consensus 474 Lnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 474 LNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 99999999999999999 77 49999999999999941 1 14
Q ss_pred EEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 438 VIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 438 VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
||-+..+. |+--=.|-.|||||.| ||.+-.+.|-+|
T Consensus 552 VIgTerhe------------------srRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 552 IIGSERHE------------------SRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred EEeeccCc------------------hHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 55444433 4444469999999999 999988888764
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.4e-20 Score=236.09 Aligned_cols=317 Identities=17% Similarity=0.080 Sum_probs=197.8
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.+.++.-...|...|--..+.. ++--+..++||+|||+++...++-.... +..+-++.|++.||.|.++.+.....
T Consensus 72 Ea~~R~lg~~~~dvQlig~l~L---~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 72 EASKRVLGMRHFDVQLIGGMVL---HEGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HHHHHHhCCCCCccHHHhhHHh---cCCchhhhhcCCCcHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 3344444556666666655533 3333557899999999855555322222 34577889999999999999998874
Q ss_pred CCCCCccEEEecCCCcc----ccCCCcEEEEChhHH-HHHhhcCC-------CCCceeEEEEcCccccccch--------
Q 000621 223 GCYEDDSVICYPSFSSA----QHFDSKVIYMTDHCL-LQHFMNDR-------DLSRISCIIVDEAHERSLNT-------- 282 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~~----~~~~~~Ivv~Tpg~L-l~~l~~~~-------~l~~l~~IIIDEaHer~~~~-------- 282 (1387)
.. +..+++..+..+. ....++|+|+||+.| ++.|.... .+..+.++||||||...+|.
T Consensus 148 ~L--Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FL--GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hc--CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 33 3355554432221 223589999999999 77775443 36788999999999422221
Q ss_pred -------hHHHHHHHHHHhccc--------C-------------------------------------------------
Q 000621 283 -------DLLLALVKDLLCRRF--------D------------------------------------------------- 298 (1387)
Q Consensus 283 -------d~l~~~lk~l~~~~~--------~------------------------------------------------- 298 (1387)
++.....+.+..+.. .
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 111111111111100 0
Q ss_pred ------------------------------------------------------------ccEEeecccCCHH--HHHHH
Q 000621 299 ------------------------------------------------------------LRLVIMSATADAH--QLSKY 316 (1387)
Q Consensus 299 ------------------------------------------------------------~kiIlmSATl~~~--~~~~~ 316 (1387)
.++.+||.|...+ .|.+.
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 2344455554221 12222
Q ss_pred hccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEe
Q 000621 317 FYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALP 396 (1387)
Q Consensus 317 f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~ 396 (1387)
+ +.+++.+|.. .|+...-.++.. ..........+...+...+ ..+.++||||+|++.++.++..|...++.+..
T Consensus 386 Y-~l~vv~IPtn-kp~~r~d~~d~i--~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 386 Y-NLDVVVIPTN-RPMIRIDHPDLI--YKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred h-CCCEEEcCCC-CCeeeeeCCCeE--EECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 2 3445555432 233222222211 0011112223333333333 56789999999999999999999999999999
Q ss_pred ccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCc--------------------------------------eE
Q 000621 397 FHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGV--------------------------------------KF 437 (1387)
Q Consensus 397 lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V--------------------------------------~~ 437 (1387)
+||. +.+|+..+..| .+...|+||||+|+||+||+== -+
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9996 77899999999 6788999999999999999631 14
Q ss_pred EEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 438 VIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 438 VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
||-+.++ -|+--=.|-.|||||.| ||.+-.+.+-+|
T Consensus 538 VigTerh------------------esrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 538 VIGTERH------------------ESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred EEecccC------------------chHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 5544443 34444569999999999 999988888764
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=5.8e-20 Score=202.04 Aligned_cols=292 Identities=17% Similarity=0.258 Sum_probs=197.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC
Q 000621 158 RQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS 237 (1387)
Q Consensus 158 ~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~ 237 (1387)
..+++..+.++...+|.|-||+|||..+-+.+. ..+..+++|.+..||...+..++.|+++.+.++... ..+...+
T Consensus 106 s~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~-~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~---~Lyg~S~ 181 (441)
T COG4098 106 SNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIE-QALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDID---LLYGDSD 181 (441)
T ss_pred HHHHHHHHHhcCcEEEEEecCCCchhhhHHHHH-HHHhcCCeEEEecCcccchHHHHHHHHHhhccCCee---eEecCCc
Confidence 356777888899999999999999987655543 335557899999999999999999999988665432 2222222
Q ss_pred ccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHHh
Q 000621 238 SAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 238 ~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f 317 (1387)
+. -.+.++|+|...|++.- ..++++||||+|.-.+..|-.+.+.-.- ...+.--+|.||||++.+...+..
T Consensus 182 ~~--fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~-ark~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 182 SY--FRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKK-ARKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred hh--ccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHH-hhcccCceEEEecCChHHHHHHhh
Confidence 22 34899999999999864 4689999999996666555544432111 123455789999998866555444
Q ss_pred cc-CCeeeeecc----cceeEEEEecCCCCCCccchhhHHH--H-HHHHHHhhhc-cCCCcEEEEeCCHHHHHHHHHHhc
Q 000621 318 YD-CGISHVVGR----NFPVDVRYVPCATAGTSAVASYVSD--V-VRMVGEVHTT-EKEGTILAFLTSKMEVEWACEKFD 388 (1387)
Q Consensus 318 ~~-~~v~~i~gr----~~pv~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~i~~~-~~~g~iLVF~~s~~eie~l~~~L~ 388 (1387)
.+ ...+.++.| ..|+.-+.-.... ...+.. + ..+...+.+. ..+.++|||+|+....+++++.|+
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~------~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk 326 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNW------NKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALK 326 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccH------HHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHH
Confidence 32 223444433 2233222111100 111110 0 0112222221 456899999999999999999995
Q ss_pred C--CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 389 A--PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 389 ~--~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
. +...+...|+. ...|.+..+.| +|+.++|++|.|+|||+|+|+|+++|--. .... .|+
T Consensus 327 ~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga--eh~v--------------fTe 388 (441)
T COG4098 327 KKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA--EHRV--------------FTE 388 (441)
T ss_pred hhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC--Cccc--------------ccH
Confidence 3 34456788887 55688888899 99999999999999999999999776311 1112 377
Q ss_pred hhHHHHhcccCCCC---CCeEEEe
Q 000621 466 SSANQRAGRAGRTE---PGRCYRL 486 (1387)
Q Consensus 466 a~~~QR~GRaGR~~---~G~~~~L 486 (1387)
++.+|.+||+||.- .|..+.+
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEE
Confidence 99999999999972 5654443
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.2e-20 Score=231.85 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=96.1
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCC---CCce----
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTI---PGVK---- 436 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdI---p~V~---- 436 (1387)
..+.++||||+++..++.++..|.+.++.+..+||.+...++..+.+.+ +|. |+||||+|+||+|| ++|.
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GG 515 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGG 515 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCC
Confidence 4789999999999999999999999999999999999988888777777 554 99999999999999 5899
Q ss_pred -EEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 437 -FVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 437 -~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
+||++.+|. |+..+.||.|||||.| ||.+..+++.+|
T Consensus 516 LhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 516 LAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred cEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999987755 4578899999999999 999999998874
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.85 E-value=7.6e-20 Score=222.87 Aligned_cols=292 Identities=18% Similarity=0.177 Sum_probs=190.5
Q ss_pred cHHHHHHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 154 IYMYRQDILRRIYG----EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~----~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
...+|++.+.++.. ++-.+++.|||+|||..+...+... ...++|++||++|+.|.++++....... ..
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~---~~ 109 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----KRSTLVLVPTKELLDQWAEALKKFLLLN---DE 109 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----cCCEEEEECcHHHHHHHHHHHHHhcCCc---cc
Confidence 33455555555544 6666667999999999887777554 2349999999999999998887765321 23
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHH-hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCcc-EEeeccc
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQH-FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLR-LVIMSAT 307 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~-l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~k-iIlmSAT 307 (1387)
+|.+......... ..|+|+|...+.+. .........+++||+|||| +.....+ ..+...+ .... +++||||
T Consensus 110 ~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~H-h~~a~~~-~~~~~~~----~~~~~~LGLTAT 182 (442)
T COG1061 110 IGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVH-HLPAPSY-RRILELL----SAAYPRLGLTAT 182 (442)
T ss_pred cceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccc-cCCcHHH-HHHHHhh----hcccceeeeccC
Confidence 3433333333222 57999999999886 2233334479999999999 4433222 2222222 2333 9999999
Q ss_pred CCH---HHHHHHhccC--Ceeeee-------cccceeEEEEecCCCCC---------Ccc-------------------c
Q 000621 308 ADA---HQLSKYFYDC--GISHVV-------GRNFPVDVRYVPCATAG---------TSA-------------------V 347 (1387)
Q Consensus 308 l~~---~~~~~~f~~~--~v~~i~-------gr~~pv~~~~~~~~~~~---------~~~-------------------~ 347 (1387)
+.- .....++... .+.... |..-|............ ... .
T Consensus 183 p~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (442)
T COG1061 183 PEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRI 262 (442)
T ss_pred ceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 631 1222222211 222222 22333333322221100 000 0
Q ss_pred hhhHHHHHHHHHHhhhcc-CCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecch
Q 000621 348 ASYVSDVVRMVGEVHTTE-KEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNV 425 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~-~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~i 425 (1387)
..........+..+.... .+.+++||+....+++.++..+...++ +..+.+..+..+|..+++.| .|..++||++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~v 341 (442)
T COG1061 263 AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKV 341 (442)
T ss_pred hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeee
Confidence 000111222222222222 467999999999999999999998888 88999999999999999999 778999999999
Q ss_pred hhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCC
Q 000621 426 AETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRT 478 (1387)
Q Consensus 426 ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~ 478 (1387)
+..|+|+|+++++|...-. -|+..|.||+||.-|.
T Consensus 342 l~EGvDiP~~~~~i~~~~t------------------~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 342 LDEGVDIPDADVLIILRPT------------------GSRRLFIQRLGRGLRP 376 (442)
T ss_pred ccceecCCCCcEEEEeCCC------------------CcHHHHHHHhhhhccC
Confidence 9999999999999965432 3568899999999994
No 102
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.85 E-value=3.5e-21 Score=215.14 Aligned_cols=271 Identities=18% Similarity=0.209 Sum_probs=177.0
Q ss_pred EEEeccHHHHHHHHHHHHHHHhcCC---CCC--ccEEEec--CCCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEE
Q 000621 200 IVCTQPRKIAAISLAQRVREESRGC---YED--DSVICYP--SFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCII 271 (1387)
Q Consensus 200 Ilv~~P~r~LA~qla~rv~~~~~~~---~~~--~~vg~~~--~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~II 271 (1387)
.+++.|.|+||.|..+.+.++.... ... ..+|+.. .+-.....+++|+|+|||+|++.+.... .+.++.++|
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlv 368 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLV 368 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEE
Confidence 3889999999999999887764221 111 1122111 1112234579999999999999987766 788999999
Q ss_pred EcCccccccc---hhHHHHHHHHHHhcc---cCccEEeecccC---CHHHHHHHhccCCe-eeeecc-cceeEEEEe---
Q 000621 272 VDEAHERSLN---TDLLLALVKDLLCRR---FDLRLVIMSATA---DAHQLSKYFYDCGI-SHVVGR-NFPVDVRYV--- 337 (1387)
Q Consensus 272 IDEaHer~~~---~d~l~~~lk~l~~~~---~~~kiIlmSATl---~~~~~~~~f~~~~v-~~i~gr-~~pv~~~~~--- 337 (1387)
+||++ -.+. +|+...+-..+.... ..++.+++|||+ +...+.+-...-|. +...|. ..|-+++..
T Consensus 369 lDead-~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 369 LDEAD-LLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred ecchh-hhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 99999 3333 345444444443332 358899999995 33333322211110 111110 011111100
Q ss_pred --cCCCC---------------------CCccchhhHHHHHHHHH-----HhhhccCCCcEEEEeCCHHHHHHHHHHhcC
Q 000621 338 --PCATA---------------------GTSAVASYVSDVVRMVG-----EVHTTEKEGTILAFLTSKMEVEWACEKFDA 389 (1387)
Q Consensus 338 --~~~~~---------------------~~~~~~~~~~~~~~~l~-----~i~~~~~~g~iLVF~~s~~eie~l~~~L~~ 389 (1387)
|.... ......+........+. ...+...-.+.||||.++.+|+.+.+++.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 00000 00000011111111110 111234567899999999999999999976
Q ss_pred C---CCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCH
Q 000621 390 P---SAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQ 465 (1387)
Q Consensus 390 ~---~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~ 465 (1387)
. .+.++++||+..+.+|..-++.| .+..+.+|||++|+||+||.++-++|+-.+|.+.
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k------------------ 589 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDK------------------ 589 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCccc------------------
Confidence 4 46899999999999999999999 8999999999999999999999999998887765
Q ss_pred hhHHHHhcccCCCC-CCeEEEeecc
Q 000621 466 SSANQRAGRAGRTE-PGRCYRLYSK 489 (1387)
Q Consensus 466 a~~~QR~GRaGR~~-~G~~~~L~s~ 489 (1387)
.+|+||+||+||.. -|.++.|+.-
T Consensus 590 ~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 590 TNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred chhhhhhhccchhhhcceeEEEeec
Confidence 88999999999985 8999888754
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.83 E-value=2.7e-19 Score=235.73 Aligned_cols=312 Identities=16% Similarity=0.211 Sum_probs=187.8
Q ss_pred CcHHHHHHHHHHH---h-cCCeEEEEcCCCCcHHHHHHHHHHHcc-ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC--
Q 000621 153 PIYMYRQDILRRI---Y-GEQILVLIGETGCGKSTQLVQFLADSG-IAAEQSIVCTQPRKIAAISLAQRVREESRGCY-- 225 (1387)
Q Consensus 153 P~~~q~~~i~~~l---~-~~~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~-- 225 (1387)
+-+.|..+|-.+. . +++..+++++||||||..+..++.... ....++||+++||++|+.|..+.+........
T Consensus 414 lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~ 493 (1123)
T PRK11448 414 LRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQT 493 (1123)
T ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccc
Confidence 4555666554333 2 345667789999999976544443221 12246899999999999999998887531111
Q ss_pred CCccEEEecCCCccccCCCcEEEEChhHHHHHhhcC------CCCCceeEEEEcCccccccchh---------------H
Q 000621 226 EDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMND------RDLSRISCIIVDEAHERSLNTD---------------L 284 (1387)
Q Consensus 226 ~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~------~~l~~l~~IIIDEaHer~~~~d---------------~ 284 (1387)
.....+.....+.......+|+|+|...|.+.+... ..+..+++||||||| |+...| +
T Consensus 494 ~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~~~~ 572 (1123)
T PRK11448 494 FASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQLDY 572 (1123)
T ss_pred hhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchhhhH
Confidence 000111110011122345899999999988765321 256789999999999 875211 1
Q ss_pred HHHHHHHHHhcccCccEEeecccCCHHHHHHHhccCCeeeee-------cccc----eeEEEE---------ecCCC---
Q 000621 285 LLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVV-------GRNF----PVDVRY---------VPCAT--- 341 (1387)
Q Consensus 285 l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~~~~v~~i~-------gr~~----pv~~~~---------~~~~~--- 341 (1387)
.. ..+.+...+ +...|+||||+... ...+|+ .++.... |-.. |+.+.- .....
T Consensus 573 ~~-~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG-~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~ 648 (1123)
T PRK11448 573 VS-KYRRVLDYF-DAVKIGLTATPALH-TTEIFG-EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEV 648 (1123)
T ss_pred HH-HHHHHHhhc-CccEEEEecCCccc-hhHHhC-CeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhh
Confidence 12 223333332 46789999998743 345665 2332211 2111 121111 00000
Q ss_pred --CCCcc-----chh--------h---------HHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCC------C
Q 000621 342 --AGTSA-----VAS--------Y---------VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAP------S 391 (1387)
Q Consensus 342 --~~~~~-----~~~--------~---------~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~------~ 391 (1387)
..... ..+ + ...+...+.+......++++||||.++++++.+++.|.+. +
T Consensus 649 ~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~ 728 (1123)
T PRK11448 649 INTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQ 728 (1123)
T ss_pred cchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCC
Confidence 00000 000 0 0011111222222234589999999999999988876531 2
Q ss_pred ---CceEeccCCCCHhhhhhhhccC-CCce-EEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHh
Q 000621 392 ---AVALPFHGQLSFDEQFCVFKSY-PGRR-KVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQS 466 (1387)
Q Consensus 392 ---~~v~~lh~~l~~~er~~v~~~f-~g~~-kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a 466 (1387)
..+..+||+.+ ++..+++.| ++.. +|+|+++++.+|+|+|.|..||....++ |+.
T Consensus 729 ~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk------------------S~~ 788 (1123)
T PRK11448 729 VEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR------------------SRI 788 (1123)
T ss_pred cCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC------------------CHH
Confidence 24566888875 456789999 6654 8999999999999999999999766544 568
Q ss_pred hHHHHhcccCCCCC--Ce-EEEeecc
Q 000621 467 SANQRAGRAGRTEP--GR-CYRLYSK 489 (1387)
Q Consensus 467 ~~~QR~GRaGR~~~--G~-~~~L~s~ 489 (1387)
.|.||+||+.|..+ |+ ++.+|.-
T Consensus 789 lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 789 LYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred HHHHHHhhhccCCccCCCceEEEEeh
Confidence 89999999999876 44 4455543
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.8e-19 Score=221.45 Aligned_cols=137 Identities=14% Similarity=0.032 Sum_probs=95.4
Q ss_pred ccHHHHHHHH-----HhccCCC---cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHH
Q 000621 137 IQAFIVRECK-----RLEDGLP---IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKI 208 (1387)
Q Consensus 137 l~~~ll~~l~-----~~~~~lP---~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~ 208 (1387)
+...+.+.+. ..|+..| ++.|.+.|..++.+.+ ++..++||+|||+++...++..... +..+++++|+|+
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~-g~~v~IVTpTrE 146 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT-GKPVHLVTVNDY 146 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh-cCCeEEEeCCHH
Confidence 5666666665 5788888 5556666655555545 6668999999999977666655433 234788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccEEEecCCCcc----ccCCCcEEEEChhHH-HHHhhcCC-CCC-------ceeEEEEcCc
Q 000621 209 AAISLAQRVREESRGCYEDDSVICYPSFSSA----QHFDSKVIYMTDHCL-LQHFMNDR-DLS-------RISCIIVDEA 275 (1387)
Q Consensus 209 LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~----~~~~~~Ivv~Tpg~L-l~~l~~~~-~l~-------~l~~IIIDEa 275 (1387)
||.|.++.+....... +..+++..+.... ....++|+|+|||+| ++++.... .++ .+.++|||||
T Consensus 147 LA~Qdae~m~~L~k~l--GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEA 224 (970)
T PRK12899 147 LAQRDCEWVGSVLRWL--GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEV 224 (970)
T ss_pred HHHHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEech
Confidence 9999999998876433 2344443322221 123689999999999 88887653 333 5689999999
Q ss_pred cc
Q 000621 276 HE 277 (1387)
Q Consensus 276 He 277 (1387)
|.
T Consensus 225 Ds 226 (970)
T PRK12899 225 DS 226 (970)
T ss_pred hh
Confidence 94
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=2.5e-19 Score=223.85 Aligned_cols=118 Identities=20% Similarity=0.205 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCC
Q 000621 352 SDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSL 430 (1387)
Q Consensus 352 ~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GI 430 (1387)
..+++.+..++ ..+.++||||+|...++.++..|...++.+..+|+.++..++..+.+.| +|. |+||||+|+||+
T Consensus 436 ~Aii~ei~~~~--~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGT 511 (908)
T PRK13107 436 QAIIKDIKDCR--ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGT 511 (908)
T ss_pred HHHHHHHHHHH--HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCc
Confidence 34455555555 4688999999999999999999999999999999999999999999999 776 999999999999
Q ss_pred CCC-------------------------------------CceEEEecCCCccccccCCCCcccceecccCHhhHHHHhc
Q 000621 431 TIP-------------------------------------GVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAG 473 (1387)
Q Consensus 431 dIp-------------------------------------~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~G 473 (1387)
||. +=-+||-+.++...+.| .|-.|
T Consensus 512 DIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID------------------~QLrG 573 (908)
T PRK13107 512 DIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRID------------------NQLRG 573 (908)
T ss_pred ceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHH------------------hhhhc
Confidence 994 11266665555444333 49999
Q ss_pred ccCCCC-CCeEEEeecccc
Q 000621 474 RAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 474 RaGR~~-~G~~~~L~s~~~ 491 (1387)
||||.| ||.+-.+.+-+|
T Consensus 574 RaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 574 RAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred ccccCCCCCceeEEEEeCc
Confidence 999999 999988888765
No 106
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.79 E-value=3.2e-18 Score=220.85 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=96.6
Q ss_pred HHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHh-cCCCCceEeccCCCCHhhhhhhhccC-C--CceEEEEecchhhcCC
Q 000621 355 VRMVGEVHTTEKEGTILAFLTSKMEVEWACEKF-DAPSAVALPFHGQLSFDEQFCVFKSY-P--GRRKVIFATNVAETSL 430 (1387)
Q Consensus 355 ~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L-~~~~~~v~~lh~~l~~~er~~v~~~f-~--g~~kVLVaT~iae~GI 430 (1387)
+..+.++++...+.++||||+++..+..+++.| ...|+.+..+||+|++.+|.++++.| . |..+|||||+++++|+
T Consensus 481 i~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGl 560 (956)
T PRK04914 481 VEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGR 560 (956)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCC
Confidence 334555555566789999999999999999999 46799999999999999999999999 4 4689999999999999
Q ss_pred CCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCe
Q 000621 431 TIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGR 482 (1387)
Q Consensus 431 dIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~ 482 (1387)
|++.+++||++++|..+ ..|.||+||+||.| .|.
T Consensus 561 Nlq~a~~VInfDlP~nP------------------~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 561 NFQFASHLVLFDLPFNP------------------DLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred CcccccEEEEecCCCCH------------------HHHHHHhcccccCCCCce
Confidence 99999999999997654 88999999999998 444
No 107
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=2.9e-18 Score=210.37 Aligned_cols=336 Identities=16% Similarity=0.173 Sum_probs=212.7
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHH--HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDI--LRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLA 214 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i--~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla 214 (1387)
+.+.+.+...+.+...-.+.-|.+- ...+.++.+.+..+||+.|||++.-..++.........++.+.|.-..+..-.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHH
Confidence 4555444444433333333333332 22344778888899999999998776666665555667777778876666555
Q ss_pred HHHHHHhcCCCCCccE-EEecCCCcc-ccCCCcEEEEChhH---HHHHhhcCCCCCceeEEEEcCccccccch---hHHH
Q 000621 215 QRVREESRGCYEDDSV-ICYPSFSSA-QHFDSKVIYMTDHC---LLQHFMNDRDLSRISCIIVDEAHERSLNT---DLLL 286 (1387)
Q Consensus 215 ~rv~~~~~~~~~~~~v-g~~~~~~~~-~~~~~~Ivv~Tpg~---Ll~~l~~~~~l~~l~~IIIDEaHer~~~~---d~l~ 286 (1387)
.....+. +..|..+ +|+.++... ..+...+.+||.++ |.+.+.....+..++.||+||.| ...+. ..+.
T Consensus 287 ~~l~~~~--~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh-mi~d~~rg~~lE 363 (1008)
T KOG0950|consen 287 SALSPFS--IDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH-MIGDKGRGAILE 363 (1008)
T ss_pred hhhhhhc--cccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee-eeeccccchHHH
Confidence 5555554 2222222 333333332 23467899999986 55666666678889999999999 33333 1233
Q ss_pred HHHHHHHhc--ccCccEEeecccC-CHHHHHHHhccCCeeeeecccceeEEEEecCCCCCCcc--chhhHHHHHHHHHHh
Q 000621 287 ALVKDLLCR--RFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSA--VASYVSDVVRMVGEV 361 (1387)
Q Consensus 287 ~~lk~l~~~--~~~~kiIlmSATl-~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~--~~~~~~~~~~~l~~i 361 (1387)
.++.++... ...+++|+||||+ |...++.|+. ..+... +..||...-...+.+.... ....+..+.......
T Consensus 364 ~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t--~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~ 440 (1008)
T KOG0950|consen 364 LLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTT--RFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSN 440 (1008)
T ss_pred HHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheec--ccCcccchhccCCCcccccchhhHHHHHhhhhhhhh
Confidence 333333332 2346799999997 6777888885 223222 2334433211111100000 000111111100000
Q ss_pred h-------------hcc-CCCcEEEEeCCHHHHHHHHHHhcC--------------------------------------
Q 000621 362 H-------------TTE-KEGTILAFLTSKMEVEWACEKFDA-------------------------------------- 389 (1387)
Q Consensus 362 ~-------------~~~-~~g~iLVF~~s~~eie~l~~~L~~-------------------------------------- 389 (1387)
. +.- .+.++|||||++..|+.++..+..
T Consensus 441 ~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~t 520 (1008)
T KOG0950|consen 441 LGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKT 520 (1008)
T ss_pred cccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhee
Confidence 0 111 234599999999999988765421
Q ss_pred CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhH
Q 000621 390 PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSA 468 (1387)
Q Consensus 390 ~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~ 468 (1387)
..+.+..+|++++.++|..+...| .|...|++||+.++.|++.|..+++|-+-+. .....++.+|
T Consensus 521 i~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~--------------g~~~l~~~~Y 586 (1008)
T KOG0950|consen 521 IPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV--------------GREFLTRLEY 586 (1008)
T ss_pred ccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc--------------ccchhhhhhH
Confidence 123478899999999999999999 8999999999999999999999999965332 2234577999
Q ss_pred HHHhcccCCCC---CCeEEEeeccccc
Q 000621 469 NQRAGRAGRTE---PGRCYRLYSKSDF 492 (1387)
Q Consensus 469 ~QR~GRaGR~~---~G~~~~L~s~~~~ 492 (1387)
.||+|||||+| -|.++..+.+.+.
T Consensus 587 kQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 587 KQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred HhhhhhhhhcccccCcceEEEeeccch
Confidence 99999999997 7999999988774
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.76 E-value=2.2e-17 Score=212.68 Aligned_cols=291 Identities=17% Similarity=0.139 Sum_probs=171.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcccc---CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc--EEE----ecCCCcc-
Q 000621 170 ILVLIGETGCGKSTQLVQFLADSGIA---AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS--VIC----YPSFSSA- 239 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~ll~~~~~---~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~--vg~----~~~~~~~- 239 (1387)
.+++.||||+|||++.+.+....... ...+++.+.|+|.+..++++++....+....... .+. +......
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 295 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQD 295 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccc
Confidence 88889999999999866555433222 4679999999999999999999986532211111 000 0000000
Q ss_pred -----------ccCCCcEEEEChhHHHHHhhcCCCC-----CceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEE
Q 000621 240 -----------QHFDSKVIYMTDHCLLQHFMNDRDL-----SRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLV 302 (1387)
Q Consensus 240 -----------~~~~~~Ivv~Tpg~Ll~~l~~~~~l-----~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiI 302 (1387)
...-..+.++||-..+......... -..+++|+||+|-..-++ ....++..+.. ..-+.++|
T Consensus 296 ~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~-~~~~l~~~i~~l~~~g~~il 374 (733)
T COG1203 296 ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET-MLAALLALLEALAEAGVPVL 374 (733)
T ss_pred cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-hHHHHHHHHHHHHhCCCCEE
Confidence 0001233344443333221111111 134899999999322221 22222222222 23468999
Q ss_pred eecccCCHHH---HHHHhccCCeeeeecccceeEEEEecCCCCCCccchhhHH----HHHHHHHHhhhccCCCcEEEEeC
Q 000621 303 IMSATADAHQ---LSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVS----DVVRMVGEVHTTEKEGTILAFLT 375 (1387)
Q Consensus 303 lmSATl~~~~---~~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~----~~~~~l~~i~~~~~~g~iLVF~~ 375 (1387)
+||||++... +..++.....+.......|....+... .....+... .....+ ......+++++|-||
T Consensus 375 l~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~kvlvI~N 448 (733)
T COG1203 375 LMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLK----RKERVDVEDGPQEELIELI--SEEVKEGKKVLVIVN 448 (733)
T ss_pred EEecCCCHHHHHHHHHHHhcccceeccccccccccccccc----cccchhhhhhhhHhhhhcc--hhhhccCCcEEEEEe
Confidence 9999998643 444443222221110000000000000 000000000 011111 112256789999999
Q ss_pred CHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-----CCceEEEEecchhhcCCCCCCceEEEecCCCcccccc
Q 000621 376 SKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-----PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFE 450 (1387)
Q Consensus 376 s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-----~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd 450 (1387)
|+..+.++++.|+..+..+..+||.++..+|.+.++.. .+...|+|||++.|.|+||. .+++|
T Consensus 449 TV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI----------- 516 (733)
T COG1203 449 TVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI----------- 516 (733)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-----------
Confidence 99999999999998777899999999999999887742 35679999999999999995 66666
Q ss_pred CCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeec
Q 000621 451 PGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYS 488 (1387)
Q Consensus 451 ~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s 488 (1387)
+.+.+-.+.+||+||++|.| +|..|..-.
T Consensus 517 ---------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 517 ---------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred ---------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 23445588899999999998 455554443
No 109
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.69 E-value=6.4e-16 Score=169.77 Aligned_cols=171 Identities=18% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc----CCCeEEEeccHHHHHHH
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA----AEQSIVCTQPRKIAAIS 212 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~----~~~~Ilv~~P~r~LA~q 212 (1387)
+++.+.+.+.+.+...|...|++++...+. ++.+++++|||+|||+.+...++..... .+.++++++|+++|+.|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q 84 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ 84 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHH
Confidence 677899999999999999999998888777 5666778999999998865555544322 34589999999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHH
Q 000621 213 LAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLL 285 (1387)
Q Consensus 213 la~rv~~~~~~~~~~~~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l 285 (1387)
+++.+....... +..+....+... ....+.+|+|+||+.|.+.+.+.. .+.+++++|+||+| ...+.++.
T Consensus 85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h-~~~~~~~~ 161 (203)
T cd00268 85 IAEVARKLGKHT--NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD-RMLDMGFE 161 (203)
T ss_pred HHHHHHHHhccC--CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH-HhhccChH
Confidence 999998875332 122222222111 112368999999999999887665 78889999999999 44455565
Q ss_pred HHHHHHHHhcccCccEEeecccCCHH
Q 000621 286 LALVKDLLCRRFDLRLVIMSATADAH 311 (1387)
Q Consensus 286 ~~~lk~l~~~~~~~kiIlmSATl~~~ 311 (1387)
..+...+....++.+++++|||++..
T Consensus 162 ~~~~~~~~~l~~~~~~~~~SAT~~~~ 187 (203)
T cd00268 162 DQIREILKLLPKDRQTLLFSATMPKE 187 (203)
T ss_pred HHHHHHHHhCCcccEEEEEeccCCHH
Confidence 55555555566689999999999743
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=4.9e-16 Score=195.13 Aligned_cols=108 Identities=23% Similarity=0.176 Sum_probs=93.6
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCC---CceE---
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIP---GVKF--- 437 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp---~V~~--- 437 (1387)
..+.++||||+|+..++.++..|...++.+..+|+ .+.+|+..+..| .+...|+||||+|+||+||+ +|..
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGG 673 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGG 673 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCC
Confidence 46889999999999999999999999999999997 477889999999 66779999999999999999 5643
Q ss_pred --EEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeeccccc
Q 000621 438 --VIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSDF 492 (1387)
Q Consensus 438 --VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~~ 492 (1387)
||++.+| -|+..|.||+|||||.| ||.+..+++.+|.
T Consensus 674 L~VIgterh------------------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 674 LFILGSERH------------------ESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ceeeCCCCC------------------chHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 3665543 35577899999999999 9999999998753
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=6.5e-15 Score=180.66 Aligned_cols=318 Identities=20% Similarity=0.160 Sum_probs=192.5
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.+.++.-...|...|.-..+..+.+ -+....||+|||+.+...++-... .+..|-++.|+-.||.+-++.+...+.
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL-~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYAL-QGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 4444555567777777776665543 244789999999975554444333 356788888999999999999988764
Q ss_pred CCCCCccEEEecCCCcc----ccCCCcEEEEChhHH-----HHHhhcCC---CCCceeEEEEcCccccccch--------
Q 000621 223 GCYEDDSVICYPSFSSA----QHFDSKVIYMTDHCL-----LQHFMNDR---DLSRISCIIVDEAHERSLNT-------- 282 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~~----~~~~~~Ivv~Tpg~L-----l~~l~~~~---~l~~l~~IIIDEaHer~~~~-------- 282 (1387)
.. |.++|+....... ....++|+|+|..-| -+.+.... ....+.+.||||||.-.+|.
T Consensus 145 ~L--GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 AL--GLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hc--CCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 32 4466664433222 124689999998754 23332221 45668899999999422221
Q ss_pred ------hHHHHHHHHHHhccc--------C--------------------------------------------------
Q 000621 283 ------DLLLALVKDLLCRRF--------D-------------------------------------------------- 298 (1387)
Q Consensus 283 ------d~l~~~lk~l~~~~~--------~-------------------------------------------------- 298 (1387)
+.+....+.+..+.+ +
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 111111110000000 0
Q ss_pred ------------------------------------------------------------ccEEeecccCC--HHHHHHH
Q 000621 299 ------------------------------------------------------------LRLVIMSATAD--AHQLSKY 316 (1387)
Q Consensus 299 ------------------------------------------------------------~kiIlmSATl~--~~~~~~~ 316 (1387)
.++-+||.|.. .+.|.+.
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 23444555542 2223332
Q ss_pred hccCCeeeeecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEe
Q 000621 317 FYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALP 396 (1387)
Q Consensus 317 f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~ 396 (1387)
+ +.+++.+|.. .|+...-.++.. ..........+++.+...+ ..+.+|||.+.+.++.+.++..|.+.+++...
T Consensus 383 Y-~l~Vv~IPtn-kp~~R~d~~d~i--y~t~~~k~~Aii~ei~~~~--~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 383 Y-DLGVSVIPPN-KPNIREDEADRV--YATAAEKNDAIVEHIAEVH--ETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred h-CCcEEECCCC-CCceeecCCCce--EeCHHHHHHHHHHHHHHHH--HcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 2 2444444432 233222222111 1112233344555555555 57889999999999999999999999999999
Q ss_pred ccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCC----------Cc-----eEEEecCCCccccccCCCCcccceec
Q 000621 397 FHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIP----------GV-----KFVIDSGMVKESYFEPGTGMNVLRVC 461 (1387)
Q Consensus 397 lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp----------~V-----~~VId~g~~k~~~yd~~~~~~~L~~~ 461 (1387)
|++.-...+ ..+...-...-.|.||||+|+||.||. +| -+||-+.++...
T Consensus 457 LNAk~~~~E-A~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSr-------------- 521 (764)
T PRK12326 457 LNAKNDAEE-ARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSE-------------- 521 (764)
T ss_pred eccCchHhH-HHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchH--------------
Confidence 998744333 233333222347999999999999995 22 277766665544
Q ss_pred ccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 462 RVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 462 ~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
.-=.|-.|||||.| ||.+-.+.+-+|
T Consensus 522 ----RID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 522 ----RLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred ----HHHHHHhcccccCCCCCceeEEEEcch
Confidence 33459999999999 999988888764
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.2e-15 Score=190.56 Aligned_cols=294 Identities=19% Similarity=0.236 Sum_probs=186.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEec-CCCc--------
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYP-SFSS-------- 238 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~-~~~~-------- 238 (1387)
....++.|-||||||..+.+.+.+. +..++++|+++|-..|..|+.+++...++. .++..+ ...+
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~-----~v~vlHS~Ls~~er~~~W~ 290 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGA-----KVAVLHSGLSPGERYRVWR 290 (730)
T ss_pred ccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCC-----ChhhhcccCChHHHHHHHH
Confidence 4788889999999999988877554 556789999999999999999999998852 222211 1111
Q ss_pred -cccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHH----HHHHHhcccCccEEeecccCCHHHH
Q 000621 239 -AQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLAL----VKDLLCRRFDLRLVIMSATADAHQL 313 (1387)
Q Consensus 239 -~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~----lk~l~~~~~~~kiIlmSATl~~~~~ 313 (1387)
......+|+++|--.++ -.++++++|||||-|+-+...+-..-+ +..+.....+.++|+-|||+..+.+
T Consensus 291 ~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~ 364 (730)
T COG1198 291 RARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESY 364 (730)
T ss_pred HHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHH
Confidence 12346899999966554 257899999999999755443211111 1222223457899999999999988
Q ss_pred HHHhcc-CCeeeeecccc---eeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHH-----------
Q 000621 314 SKYFYD-CGISHVVGRNF---PVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKM----------- 378 (1387)
Q Consensus 314 ~~~f~~-~~v~~i~gr~~---pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~----------- 378 (1387)
.+...+ -..+....|.. +..+............-.......++.+.+-+ ..+.++|+|+|.+.
T Consensus 365 ~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg 442 (730)
T COG1198 365 ANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCG 442 (730)
T ss_pred HhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCC
Confidence 776443 12333333332 33333333322111110002333444444333 56788888888876
Q ss_pred -------------------------------------------------HHHHHHHHhcC--CCCceEeccCCCCHhh--
Q 000621 379 -------------------------------------------------EVEWACEKFDA--PSAVALPFHGQLSFDE-- 405 (1387)
Q Consensus 379 -------------------------------------------------eie~l~~~L~~--~~~~v~~lh~~l~~~e-- 405 (1387)
.++++.+.|.. ++.++..+.++.+...
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~ 522 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGA 522 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhh
Confidence 22333333332 4566777777765533
Q ss_pred hhhhhccC-CCceEEEEecchhhcCCCCCCceEEE----ecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-
Q 000621 406 QFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVI----DSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE- 479 (1387)
Q Consensus 406 r~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VI----d~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~- 479 (1387)
-...+..| +|+.+|||.|.+++.|.|+|+|+.|. |.++-.. |.+..- -.-..+.|=+|||||.+
T Consensus 523 ~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~---DfRA~E-------r~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 523 LEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSP---DFRASE-------RTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred HHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCC---CcchHH-------HHHHHHHHHHhhhccCCC
Confidence 45667888 89999999999999999999999886 3333211 111111 11256789999999985
Q ss_pred CCeEEE
Q 000621 480 PGRCYR 485 (1387)
Q Consensus 480 ~G~~~~ 485 (1387)
+|..+.
T Consensus 593 ~G~VvI 598 (730)
T COG1198 593 PGEVVI 598 (730)
T ss_pred CCeEEE
Confidence 887654
No 113
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.64 E-value=3.7e-16 Score=155.39 Aligned_cols=107 Identities=27% Similarity=0.397 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhccccCcccc---CC--CCCCchhhHHHHHHHHHhcchhhhhhcCCCCCCcEEeecCceEEECCCCcccc
Q 000621 671 KELETCLEKELAIIIPSYWL---WN--PHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLI 745 (1387)
Q Consensus 671 ~qL~~~l~~~l~~~~~~~~~---~~--~~~~~~~~~~i~~~l~~gf~~nvA~~~~~~~~gy~~~~~~~~v~IHPsS~L~~ 745 (1387)
+||.++| +++|++..+... .. ++....+...|+++||+|||||||++.+. ..|.++..+..|+|||+|+|
T Consensus 1 ~QL~~il-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~--~~y~~~~~~~~v~iHPsS~l-- 75 (114)
T PF07717_consen 1 KQLLRIL-ERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNK--GSYKTLSNGQPVFIHPSSVL-- 75 (114)
T ss_dssp HHHHHHH-HHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TT--SSEEETTTG-EEEE-TTSTT--
T ss_pred CHHHHHH-HHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCC--CCEEEecCCCEEEEecCccc--
Confidence 4777777 456776544311 01 11112455789999999999999987632 35888878889999999998
Q ss_pred cCCCCCEEEEEEecccccceeeeecccChhhHhhhCC
Q 000621 746 FGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCP 782 (1387)
Q Consensus 746 ~~~~p~wvvy~el~~t~~~yir~vt~I~~~wl~~~~~ 782 (1387)
++.+|+||+|+|++.|++.||++||+|+|+||..++|
T Consensus 76 ~~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~ 112 (114)
T PF07717_consen 76 FKKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAP 112 (114)
T ss_dssp TTTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-T
T ss_pred cccccccchhhhheecCCcEEEECcCCCHHHHHHHcc
Confidence 8889999999999999999999999999999999998
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.63 E-value=4.5e-15 Score=157.72 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 155 YMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 155 ~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
+.|++.+..++ ++..+++.||||||||+++..+++..... ...++++++|+++++.|+.+++...+.... .......
T Consensus 2 ~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~ 79 (169)
T PF00270_consen 2 PLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTN-VRVVLLH 79 (169)
T ss_dssp HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTT-SSEEEES
T ss_pred HHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccc-ccccccc
Confidence 34666666666 66668889999999999987777665433 235899999999999999999999875421 1222222
Q ss_pred cCCCcc------ccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhc--ccCccEEee
Q 000621 234 PSFSSA------QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCR--RFDLRLVIM 304 (1387)
Q Consensus 234 ~~~~~~------~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~--~~~~kiIlm 304 (1387)
...... ...+++|+|+||++|.+.+.... .+.++++||+||+|+.. ..++...+...+... .++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~-~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS-DETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH-HTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc-cccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 222111 12469999999999999987743 56679999999999433 323333332222222 336899999
Q ss_pred cccCCHHHHH
Q 000621 305 SATADAHQLS 314 (1387)
Q Consensus 305 SATl~~~~~~ 314 (1387)
|||++ ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99998 5544
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.62 E-value=3.1e-14 Score=173.97 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=199.3
Q ss_pred CCcHHHHHHHHHHHh----cCCeEEEEcCCCCcHHHHHHHHHHHcc-ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC
Q 000621 152 LPIYMYRQDILRRIY----GEQILVLIGETGCGKSTQLVQFLADSG-IAAEQSIVCTQPRKIAAISLAQRVREESRGCYE 226 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~----~~~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~ 226 (1387)
-|-+-|..+|-..++ +++-+++++.||+|||-.+.+++.... .+.-++||+++-|++|..|.+..+.......
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-- 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG-- 242 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc--
Confidence 345667766655542 345577788999999976555553321 1224689999999999999998888876321
Q ss_pred CccEEEecCCCccccCCCcEEEEChhHHHHHhhcC-C-----CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCcc
Q 000621 227 DDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMND-R-----DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLR 300 (1387)
Q Consensus 227 ~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~-~-----~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~k 300 (1387)
..+.. ..+......++|.++|...+...+... . ....+++||||||| |++..... .++.-+.. -
T Consensus 243 -~~~n~--i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFdA-----~ 312 (875)
T COG4096 243 -TKMNK--IEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFDA-----A 312 (875)
T ss_pred -cceee--eecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHHH-----H
Confidence 11111 111222235899999999998777554 1 44569999999999 88776544 22222211 2
Q ss_pred EEeecccCCHH---HHHHHhccCCeeeee-------c-----ccceeEEEEecC-----CCC------------------
Q 000621 301 LVIMSATADAH---QLSKYFYDCGISHVV-------G-----RNFPVDVRYVPC-----ATA------------------ 342 (1387)
Q Consensus 301 iIlmSATl~~~---~~~~~f~~~~v~~i~-------g-----r~~pv~~~~~~~-----~~~------------------ 342 (1387)
+++++||+... .-..||.+.|+..-. | +...+.+.+... ..+
T Consensus 313 ~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~ 392 (875)
T COG4096 313 TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFE 392 (875)
T ss_pred HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccc
Confidence 34559997542 123566444433211 1 111111111100 000
Q ss_pred -----CCccchhhHHHHHHHHHHhhhc--cC--CCcEEEEeCCHHHHHHHHHHhcC-----CCCceEeccCCCCHhhhhh
Q 000621 343 -----GTSAVASYVSDVVRMVGEVHTT--EK--EGTILAFLTSKMEVEWACEKFDA-----PSAVALPFHGQLSFDEQFC 408 (1387)
Q Consensus 343 -----~~~~~~~~~~~~~~~l~~i~~~--~~--~g~iLVF~~s~~eie~l~~~L~~-----~~~~v~~lh~~l~~~er~~ 408 (1387)
.........+.+...+.+.+.. .. .+++||||.+..+++.+.+.|.+ .+--+..+.|.-... +.
T Consensus 393 ~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~-q~- 470 (875)
T COG4096 393 ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA-QA- 470 (875)
T ss_pred ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh-HH-
Confidence 0001111223345555555544 22 57999999999999999998874 223355566653332 22
Q ss_pred hhccC-C--CceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-----C
Q 000621 409 VFKSY-P--GRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-----P 480 (1387)
Q Consensus 409 v~~~f-~--g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-----~ 480 (1387)
.++.| . .-.+|.++.+++.||||+|.|..+|-.-..+ |+.-|.||+||+-|.. |
T Consensus 471 ~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------------------SktkF~QMvGRGTRl~~~~~~~ 532 (875)
T COG4096 471 LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------------------SKTKFKQMVGRGTRLCPDLGGP 532 (875)
T ss_pred HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------------------hHHHHHHHhcCccccCccccCc
Confidence 34455 2 3348999999999999999999888544322 6788999999999973 2
Q ss_pred C---eEEEeecc---cccccCCCCCCcchhccchHHHHHHHH
Q 000621 481 G---RCYRLYSK---SDFETRPLNQEPEIHRVHLGIAVLRIL 516 (1387)
Q Consensus 481 G---~~~~L~s~---~~~~~~~~~~~pEi~r~~L~~~~L~l~ 516 (1387)
| ..|.++.- -++-.|.+...+.-.+..|+.-++.-.
T Consensus 533 ~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~ 574 (875)
T COG4096 533 EQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADR 574 (875)
T ss_pred cccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhhhh
Confidence 2 23444433 223346666666666777766555433
No 116
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.61 E-value=1.9e-14 Score=175.55 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCC--CccE-
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQPRKIAAISLAQRVREESRGCYE--DDSV- 230 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~--~~~v- 230 (1387)
.-|.+.+..+..+.-++|+|||.+|||..-+- ..+..+ ...+.|+++.|+++|..|++..+...+..... +.+.
T Consensus 514 ~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~ 592 (1330)
T KOG0949|consen 514 EWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLL 592 (1330)
T ss_pred HHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhH
Confidence 34667788888888888899999999985433 333322 23567889999999999998888776532221 1111
Q ss_pred EEecCCCccccCCCcEEEEChhHHHHHhhcCC----CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 231 ICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR----DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 231 g~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~----~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
|...+.-+...-+++|+|+-|++|-..|...| +..++++||+||+|.-+-..|- +-....+ .--.+.++++||
T Consensus 593 g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~-l~~Eqll--~li~CP~L~LSA 669 (1330)
T KOG0949|consen 593 GDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG-LLWEQLL--LLIPCPFLVLSA 669 (1330)
T ss_pred hhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc-hHHHHHH--HhcCCCeeEEec
Confidence 11111112223479999999999988887643 7889999999999942222211 1111111 223578999999
Q ss_pred cC-CHHHHHHHhc
Q 000621 307 TA-DAHQLSKYFY 318 (1387)
Q Consensus 307 Tl-~~~~~~~~f~ 318 (1387)
|+ ++..+..|+.
T Consensus 670 TigN~~l~qkWln 682 (1330)
T KOG0949|consen 670 TIGNPNLFQKWLN 682 (1330)
T ss_pred ccCCHHHHHHHHH
Confidence 97 7888888886
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=2.5e-14 Score=179.64 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
..|...| ++-.+.=++--|....||+|||+++...++-... .+..|-++.|+..||.+-++.+...+... |..+
T Consensus 81 m~~ydVQ---liGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~l--Gl~v 154 (913)
T PRK13103 81 MRHFDVQ---LIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFL--GLSV 154 (913)
T ss_pred CCcchhH---HHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhccc--CCEE
Confidence 4455444 4444444555566889999999975544443332 35678888899999999999999887433 3466
Q ss_pred EEecCCCcc----ccCCCcEEEEChhHH-HHHhhcCC-------CCCceeEEEEcCccc
Q 000621 231 ICYPSFSSA----QHFDSKVIYMTDHCL-LQHFMNDR-------DLSRISCIIVDEAHE 277 (1387)
Q Consensus 231 g~~~~~~~~----~~~~~~Ivv~Tpg~L-l~~l~~~~-------~l~~l~~IIIDEaHe 277 (1387)
++....... ....++|+|+|..-| ++.|+... ...++.++||||+|.
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 664432221 123589999999876 23332222 347899999999994
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=1e-14 Score=169.57 Aligned_cols=279 Identities=19% Similarity=0.174 Sum_probs=178.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcE
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKV 246 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~I 246 (1387)
...+++-+|||.||||.-+++-+.+. ++-++--|.|.||..+++++.+..-.|... .|-..++.......+..
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~na~gipCdL~--TGeE~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRLNALGIPCDLL--TGEERRFVLDNGNPAQH 262 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHhhhcCCCcccc--ccceeeecCCCCCcccc
Confidence 35677889999999999888877554 244666799999999999999876444321 11111222222334677
Q ss_pred EEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeecccCCHHHHHHHhccCCeeee
Q 000621 247 IYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMSATADAHQLSKYFYDCGISHV 325 (1387)
Q Consensus 247 vv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmSATl~~~~~~~~f~~~~v~~i 325 (1387)
+=||-+|.- .-..|++.||||++ .+-|.+-..+..+.++..- ..+.+-+=-|-++ ...+. ...
T Consensus 263 vScTVEM~s-------v~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsvld--lV~~i------~k~ 326 (700)
T KOG0953|consen 263 VSCTVEMVS-------VNTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSVLD--LVRKI------LKM 326 (700)
T ss_pred eEEEEEEee-------cCCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchHHH--HHHHH------Hhh
Confidence 888888763 24468999999999 4555443344443333221 1222222111111 11111 112
Q ss_pred ecccceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCc-eEeccCCCCHh
Q 000621 326 VGRNFPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAV-ALPFHGQLSFD 404 (1387)
Q Consensus 326 ~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~-v~~lh~~l~~~ 404 (1387)
.|.. +++++..... .-.+++ .+..-+.+-.+|+++| |-++++|-.+...+.+.+.. +..+||+||++
T Consensus 327 TGd~--vev~~YeRl~------pL~v~~---~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPe 394 (700)
T KOG0953|consen 327 TGDD--VEVREYERLS------PLVVEE---TALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPE 394 (700)
T ss_pred cCCe--eEEEeecccC------cceehh---hhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCc
Confidence 2322 2333222211 000111 1222233456777776 44778899999999877665 99999999999
Q ss_pred hhhhhhccC---CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC--
Q 000621 405 EQFCVFKSY---PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-- 479 (1387)
Q Consensus 405 er~~v~~~f---~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-- 479 (1387)
.|..--..| ++..+|+||||+.++|+|+ +|+-||-+.+.|-. --.+.+++.++..|-+|||||.|
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kys---------g~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYS---------GRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCC---------cccceeccHHHHHHHhhcccccccC
Confidence 987776777 4889999999999999999 68888877775522 22455788899999999999986
Q ss_pred --CCeEEEeeccc
Q 000621 480 --PGRCYRLYSKS 490 (1387)
Q Consensus 480 --~G~~~~L~s~~ 490 (1387)
.|.+-.|+.++
T Consensus 465 ~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 465 YPQGEVTTLHSED 477 (700)
T ss_pred CcCceEEEeeHhh
Confidence 57777777764
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.58 E-value=3.5e-14 Score=181.44 Aligned_cols=306 Identities=13% Similarity=0.126 Sum_probs=174.8
Q ss_pred cCCCcHHHHHHHHHHHhc---------CCeEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 150 DGLPIYMYRQDILRRIYG---------EQILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~---------~~vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
...|.+.|..++-.++.. ++..+|..+||||||..+...+... ......+|++++||+.|..|+.+.+..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 345777777776655422 3567778999999998654333221 123356899999999999999999988
Q ss_pred HhcCCCCCccEEEecCC-CccccCCCcEEEEChhHHHHHhhcC---CCCCc-eeEEEEcCccccccchhHHHHHHHHHHh
Q 000621 220 ESRGCYEDDSVICYPSF-SSAQHFDSKVIYMTDHCLLQHFMND---RDLSR-ISCIIVDEAHERSLNTDLLLALVKDLLC 294 (1387)
Q Consensus 220 ~~~~~~~~~~vg~~~~~-~~~~~~~~~Ivv~Tpg~Ll~~l~~~---~~l~~-l~~IIIDEaHer~~~~d~l~~~lk~l~~ 294 (1387)
....+.. .++..... .........|+|+|.+.|.+.+... ..... -.+||+|||| |+....+... +..
T Consensus 316 ~~~~~~~--~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~~~----l~~ 388 (667)
T TIGR00348 316 LQKDCAE--RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELAKN----LKK 388 (667)
T ss_pred hCCCCCc--ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHHHH----HHh
Confidence 7522111 01000000 0011234789999999998644321 11111 1389999999 8876554332 323
Q ss_pred cccCccEEeecccCCH----HHHHHHhc---cCCeeeee-----cccceeEEEEecCCCCC---Cc--------------
Q 000621 295 RRFDLRLVIMSATADA----HQLSKYFY---DCGISHVV-----GRNFPVDVRYVPCATAG---TS-------------- 345 (1387)
Q Consensus 295 ~~~~~kiIlmSATl~~----~~~~~~f~---~~~v~~i~-----gr~~pv~~~~~~~~~~~---~~-------------- 345 (1387)
..++...++||||+-. ..+ ..|+ +..+.... ...+.+.+.|.+..... ..
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLP 467 (667)
T ss_pred hCCCCcEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhh
Confidence 4577889999999832 222 2222 11121111 01122333343321100 00
Q ss_pred -cchhh---------------------HHHHHHHH-HHhhhc--cCCCcEEEEeCCHHHHHHHHHHhcCC-----CCceE
Q 000621 346 -AVASY---------------------VSDVVRMV-GEVHTT--EKEGTILAFLTSKMEVEWACEKFDAP-----SAVAL 395 (1387)
Q Consensus 346 -~~~~~---------------------~~~~~~~l-~~i~~~--~~~g~iLVF~~s~~eie~l~~~L~~~-----~~~v~ 395 (1387)
...+. +..+...+ .+.... ..+++.+|||.++..|..+++.|.+. +...+
T Consensus 468 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~v 547 (667)
T TIGR00348 468 ERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAI 547 (667)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeE
Confidence 00000 00111111 111111 23589999999999999988887542 23445
Q ss_pred eccCCCCHh---------------------hhhhhhccC--CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCC
Q 000621 396 PFHGQLSFD---------------------EQFCVFKSY--PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPG 452 (1387)
Q Consensus 396 ~lh~~l~~~---------------------er~~v~~~f--~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~ 452 (1387)
.++++...+ ....+.+.| ++..+|||.++++-+|+|.|.+.+++-.-
T Consensus 548 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK---------- 617 (667)
T TIGR00348 548 VMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK---------- 617 (667)
T ss_pred EecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec----------
Confidence 555543322 123566777 36789999999999999999999887321
Q ss_pred CCcccceecccCHhhHHHHhcccCCC-CCCe
Q 000621 453 TGMNVLRVCRVSQSSANQRAGRAGRT-EPGR 482 (1387)
Q Consensus 453 ~~~~~L~~~~iS~a~~~QR~GRaGR~-~~G~ 482 (1387)
|..-..++|.+||+-|. .+|+
T Consensus 618 ---------plk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 618 ---------PLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred ---------cccccHHHHHHHHhccccCCCC
Confidence 22224578999999994 4443
No 120
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.58 E-value=3.7e-15 Score=144.74 Aligned_cols=93 Identities=31% Similarity=0.448 Sum_probs=67.2
Q ss_pred HHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhhcchHHHHHHhHHhcCCCCcccccCCchhhhHHH
Q 000621 539 MAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKAD 618 (1387)
Q Consensus 539 ~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~ 618 (1387)
+|++.|+.+|||+.++ .||++|+.|+.||++|++||||+.+..++|.+++++|||+|+. +++|.++...++..+.+
T Consensus 1 ~A~~~L~~Lgald~~~---~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~ 76 (102)
T PF04408_consen 1 KALELLKSLGALDENG---NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQD 76 (102)
T ss_dssp -HHHHHHHTTSB-TTS----B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH-
T ss_pred CHHHHHHHCCCCCCCC---CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHH
Confidence 4889999999998765 7999999999999999999999999999999999999999986 88997765444444433
Q ss_pred Hhhhh---------hcCCCCcHHHHH
Q 000621 619 CLKVQ---------FCHRNGDLFTLL 635 (1387)
Q Consensus 619 ~~~~~---------f~~~~gD~lt~l 635 (1387)
..+.+ +.+..|||+|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 77 NAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp -HHHTT----------BTTBHHHHHH
T ss_pred HHHHHhhhhhcccccCCCCCCHHhcC
Confidence 34444 478899999986
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=9.3e-14 Score=172.55 Aligned_cols=117 Identities=23% Similarity=0.238 Sum_probs=87.1
Q ss_pred HHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCC-ceEEEEecchhhcCCC
Q 000621 353 DVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPG-RRKVIFATNVAETSLT 431 (1387)
Q Consensus 353 ~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g-~~kVLVaT~iae~GId 431 (1387)
.++..+...+ ..+.|+||.|.+.+..+.++..|.+.++....|++.-. +++.-+-.-.| .-.|.||||+|+||.|
T Consensus 414 Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa~AG~~GaVTIATNMAGRGTD 489 (925)
T PRK12903 414 AVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIAKAGQKGAITIATNMAGRGTD 489 (925)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHHhCCCCCeEEEecccccCCcC
Confidence 3444444444 46889999999999999999999999999888888633 33332222233 3489999999999999
Q ss_pred CCC---ce-----EEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 432 IPG---VK-----FVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 432 Ip~---V~-----~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
|.- |. +||-+.++...+.| .|-.|||||.| ||.+-.+.+-+|
T Consensus 490 I~Lg~~V~~~GGLhVIgTerheSrRID------------------nQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 490 IKLSKEVLELGGLYVLGTDKAESRRID------------------NQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred ccCchhHHHcCCcEEEecccCchHHHH------------------HHHhcccccCCCCCcceEEEecch
Confidence 952 22 88877766544333 49999999999 999877777654
No 122
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.57 E-value=1.6e-16 Score=191.33 Aligned_cols=436 Identities=8% Similarity=-0.162 Sum_probs=319.3
Q ss_pred ccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc----CCCeEEEeccHHHHHHHHHHHHHHHhcCC
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA----AEQSIVCTQPRKIAAISLAQRVREESRGC 224 (1387)
Q Consensus 149 ~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~----~~~~Ilv~~P~r~LA~qla~rv~~~~~~~ 224 (1387)
..-.|+.+..+.|++.+..+.+.++.+.||||||++.++.+++.... ..+.++..+||++.|...+.++.-+.. .
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fct-v 480 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCT-V 480 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeec-c
Confidence 34578889999999999999999999999999999999999886332 234788899999999888877665532 1
Q ss_pred CCCccEEEecCCCc-cccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 225 YEDDSVICYPSFSS-AQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 225 ~~~~~vg~~~~~~~-~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
.++...++...+.. ....+.-+-++|.+.|+..+..+ +-.....+.||.|+++++||++..+++.+ .++.+
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~ 552 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTV 552 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceee
Confidence 11222223222222 22334566788999988887665 55667889999999999999999887765 35589
Q ss_pred ecccCCHHHHHHHhccCCeeeeecccceeEEEEecC------------------CC------------CCCccchhhHHH
Q 000621 304 MSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPC------------------AT------------AGTSAVASYVSD 353 (1387)
Q Consensus 304 mSATl~~~~~~~~f~~~~v~~i~gr~~pv~~~~~~~------------------~~------------~~~~~~~~~~~~ 353 (1387)
+++|.+.+.|-.++..++...++++.++++.++..+ +. +.........+.
T Consensus 553 ~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Ea 632 (1282)
T KOG0921|consen 553 HGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEA 632 (1282)
T ss_pred ccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHH
Confidence 999999999988888899999998888776543210 00 112222333343
Q ss_pred HHHHH------HHhhhccCCCcEEEEeCCHHHHHHH------HHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEE
Q 000621 354 VVRMV------GEVHTTEKEGTILAFLTSKMEVEWA------CEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVI 420 (1387)
Q Consensus 354 ~~~~l------~~i~~~~~~g~iLVF~~s~~eie~l------~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVL 420 (1387)
....+ ..++.-.+++..|+|++++.-.... ++.|-.+...+.+.|..+...++..+++.. .+.+++.
T Consensus 633 l~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaet 712 (1282)
T KOG0921|consen 633 LLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAET 712 (1282)
T ss_pred HHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeE
Confidence 33222 1223336889999999998765543 345555666788999999999999999887 8899999
Q ss_pred EecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccccCCCCCC
Q 000621 421 FATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFETRPLNQE 500 (1387)
Q Consensus 421 VaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~~~~~~~ 500 (1387)
..|...++.+.+..+.+|++++-.+...+-....++...+.|-+...-.||.||++|...+.||.++.......|...+.
T Consensus 713 siTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~pl 792 (1282)
T KOG0921|consen 713 SITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPL 792 (1282)
T ss_pred eeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCcc
Confidence 99999999999999999999999887777677777888888999999999999999999999999999999999999999
Q ss_pred cchhccchHHHHHHHHHcCCCCCCCc--cccCCCcHHHHHHHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHH
Q 000621 501 PEIHRVHLGIAVLRILALGIRDVQGF--DFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKL 578 (1387)
Q Consensus 501 pEi~r~~L~~~~L~l~~lgi~~~~~f--~~ld~P~~~~l~~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ 578 (1387)
+|+.++.+...++.++.+-.+.+..+ +.+.+|+..... +..|...+.+... +...+|++++-....|+.|..+++
T Consensus 793 hemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~--m~~ld~n~elt~l-g~~la~l~iep~~~k~~~lg~~~g 869 (1282)
T KOG0921|consen 793 HEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLRE--MGALDANDELTPL-GRMLARLPIEPRIGKMMILGTALG 869 (1282)
T ss_pred HHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHH--hhhhhccCcccch-hhhhhhccCcccccceeeechhhc
Confidence 99999877666655544433344444 456666655444 3344443333322 244799999999999999999998
Q ss_pred HHHHhhhcchHHHHHHhH
Q 000621 579 ILSCFRRRLGREGLVLAA 596 (1387)
Q Consensus 579 ll~~~~~~c~~~~l~iaA 596 (1387)
....+.+-..+....+++
T Consensus 870 ~~~~m~~~as~~s~~~~~ 887 (1282)
T KOG0921|consen 870 AGSVMCDVASAMSFPTPF 887 (1282)
T ss_pred cchhhhhhhccccccccc
Confidence 766554433333444443
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.55 E-value=4.4e-13 Score=165.93 Aligned_cols=274 Identities=19% Similarity=0.186 Sum_probs=174.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC-CCc
Q 000621 150 DGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCY-EDD 228 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~-~~~ 228 (1387)
...|...|+--.-..+.+....+ .||||.||||....+.+-.+ ..+++++++.||+.|+.|+++++..+..... ...
T Consensus 80 G~~~ws~QR~WakR~~rg~SFai-iAPTGvGKTTfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~ 157 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAI-IAPTGVGKTTFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDV 157 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEE-EcCCCCchhHHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcce
Confidence 34666666666656565555555 69999999996433322221 2247899999999999999999999863322 222
Q ss_pred cEEEecCCCcc---------ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccc---cccchhHHHHH--------
Q 000621 229 SVICYPSFSSA---------QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHE---RSLNTDLLLAL-------- 288 (1387)
Q Consensus 229 ~vg~~~~~~~~---------~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHe---r~~~~d~l~~~-------- 288 (1387)
.++|......+ .+.+.+|+|+|.+.|...+..-.. -++++|++|.+|. .+-+.|-++.+
T Consensus 158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i 236 (1187)
T COG1110 158 LVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVI 236 (1187)
T ss_pred eeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHH
Confidence 23332221111 223689999999999877644433 3689999999993 11111111111
Q ss_pred --------HHH-HH---------------------hcccCccEEeecccCCHH-----HHHHHhccCCeeeeecccceeE
Q 000621 289 --------VKD-LL---------------------CRRFDLRLVIMSATADAH-----QLSKYFYDCGISHVVGRNFPVD 333 (1387)
Q Consensus 289 --------lk~-l~---------------------~~~~~~kiIlmSATl~~~-----~~~~~f~~~~v~~i~gr~~pv~ 333 (1387)
++. +. ...+.-.+|++|||..+. .|.+.++= .+-....-...+.
T Consensus 237 ~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-evG~~~~~LRNIv 315 (1187)
T COG1110 237 ESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-EVGSGGEGLRNIV 315 (1187)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC-ccCccchhhhhee
Confidence 100 00 112345788999997442 34444431 1100000112333
Q ss_pred EEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCC---HHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhh
Q 000621 334 VRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTS---KMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVF 410 (1387)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s---~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~ 410 (1387)
..|.... ..+..+..+.. . +...|||++. ++.++++++.|+..|+.+..+|+. ..+.+
T Consensus 316 D~y~~~~---------~~e~~~elvk~----l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~l 376 (1187)
T COG1110 316 DIYVESE---------SLEKVVELVKK----L-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEAL 376 (1187)
T ss_pred eeeccCc---------cHHHHHHHHHH----h-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhh
Confidence 3343321 13333333322 2 3468999999 899999999999999999999984 36788
Q ss_pred ccC-CCceEEEEec----chhhcCCCCCC-ceEEEecCCCcc
Q 000621 411 KSY-PGRRKVIFAT----NVAETSLTIPG-VKFVIDSGMVKE 446 (1387)
Q Consensus 411 ~~f-~g~~kVLVaT----~iae~GIdIp~-V~~VId~g~~k~ 446 (1387)
+.| .|+.+++|.. +++-||||+|. ++|+|-+|.|+.
T Consensus 377 e~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 377 EDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred hhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 999 8999999986 68999999997 889999999974
No 124
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.55 E-value=9.7e-14 Score=173.73 Aligned_cols=127 Identities=12% Similarity=-0.037 Sum_probs=78.0
Q ss_pred HHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCC
Q 000621 145 CKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGC 224 (1387)
Q Consensus 145 l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~ 224 (1387)
.++.-...|...|-- .++.-++--+..+.||.|||+++..+++-.++. +..|-|+.+...||..-++.+.......
T Consensus 69 ~~R~lG~r~ydvQli---g~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 69 SFRTLGLRHFDVQLI---GGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred HHHHhCCCCCchHhh---hhHhhcCCccccccCCCCchHHHHHHHHHHHhc-CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 333333445555544 444445556678999999999754444333332 4567777788899888887777665322
Q ss_pred CCCccEEEecCCCc----cccCCCcEEEEChhHH-----HHHhhcCC---CCCceeEEEEcCccc
Q 000621 225 YEDDSVICYPSFSS----AQHFDSKVIYMTDHCL-----LQHFMNDR---DLSRISCIIVDEAHE 277 (1387)
Q Consensus 225 ~~~~~vg~~~~~~~----~~~~~~~Ivv~Tpg~L-----l~~l~~~~---~l~~l~~IIIDEaHe 277 (1387)
|.++|+...... .....++|+|+|..-| .+.+...+ ....+.+.||||||.
T Consensus 145 --GLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 145 --GLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred --CCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 345665433222 1234689999998643 33332221 456788999999994
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=4.3e-14 Score=178.59 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=100.1
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCC
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGM 443 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~ 443 (1387)
..+.++||||+++..++.+++.|.+.++.+..+||+++..+|.++++.| .|+..|+|||+++++|+|+|++++||.++-
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 4578999999999999999999999999999999999999999999999 899999999999999999999999997652
Q ss_pred CccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccc
Q 000621 444 VKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKS 490 (1387)
Q Consensus 444 ~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~ 490 (1387)
-.. ..|-|..+|+||+|||||..+|.|+.+++..
T Consensus 520 dif-------------G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 520 DKE-------------GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred ccc-------------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 110 0133558999999999999999999988864
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1e-12 Score=164.03 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
...+--+++.++.=++--|..+.||-|||+++..+++-.++. +..|-|+.+..-||..=++.+...... .|.+||+.
T Consensus 84 ~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-GkgVhVVTvNdYLA~RDae~m~~vy~~--LGLtvg~i 160 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-GKGVHVVTVNDYLARRDAEWMGQVHRF--LGLSVGLI 160 (939)
T ss_pred CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-CCCeEEEeCCHHHHHhHHHHHHHHHHH--hCCeEEEE
Confidence 333444455555556666778999999999855444444444 344555556667776666666555422 23466664
Q ss_pred cCCCc----cccCCCcEEEEChhHH-----HHHhhcCC---CCCceeEEEEcCccc
Q 000621 234 PSFSS----AQHFDSKVIYMTDHCL-----LQHFMNDR---DLSRISCIIVDEAHE 277 (1387)
Q Consensus 234 ~~~~~----~~~~~~~Ivv~Tpg~L-----l~~l~~~~---~l~~l~~IIIDEaHe 277 (1387)
..... +....++|+|+|+.-| .+.+..+. ....+.+.||||||.
T Consensus 161 ~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 161 QQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred CCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 33221 2234789999999876 44443322 557789999999994
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.49 E-value=6.5e-12 Score=165.65 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=110.1
Q ss_pred ccEEeecccCCH----HHHHHHhccCC--eeeeeccccee---EEEEecCCCCC--CccchhhHHHHHHHHHHhhhccCC
Q 000621 299 LRLVIMSATADA----HQLSKYFYDCG--ISHVVGRNFPV---DVRYVPCATAG--TSAVASYVSDVVRMVGEVHTTEKE 367 (1387)
Q Consensus 299 ~kiIlmSATl~~----~~~~~~f~~~~--v~~i~gr~~pv---~~~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~~~~~ 367 (1387)
..+|++|||+.. +-+.+.++-.. ...+....|+. ...|.+..... ......+.+.+...+.++.. ..+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 468899999863 33444443111 11111222331 12233322211 11224555666677766654 356
Q ss_pred CcEEEEeCCHHHHHHHHHHhcC----CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCce--EEEe
Q 000621 368 GTILAFLTSKMEVEWACEKFDA----PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVK--FVID 440 (1387)
Q Consensus 368 g~iLVF~~s~~eie~l~~~L~~----~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~--~VId 440 (1387)
|++|||+++.+..+.+++.|.. .++.+. ..+.. ..|.++++.| .++..||++|+.+.+|||+|+.. .||-
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 8999999999999999999864 233332 23332 4688889999 78899999999999999999865 6667
Q ss_pred cCCCccccccCCC----------Ccccce--ecccCHhhHHHHhcccCCCC--CCeEEEe
Q 000621 441 SGMVKESYFEPGT----------GMNVLR--VCRVSQSSANQRAGRAGRTE--PGRCYRL 486 (1387)
Q Consensus 441 ~g~~k~~~yd~~~----------~~~~L~--~~~iS~a~~~QR~GRaGR~~--~G~~~~L 486 (1387)
.++|-..--||.. |-+... .-|-..-...|-+||.=|.. .|..+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 7877532222210 101110 01223356789999999986 5655444
No 128
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.48 E-value=2.1e-12 Score=167.93 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=94.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-C---CceEEEEecchhhcCCCCCCceEEEec
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-P---GRRKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~---g~~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
.+.++|||+........+...|...++....+||+++..+|..+++.| . +..-+|++|.+++.|||+...++||.+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiy 565 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILY 565 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEe
Confidence 467999999999889999999988899999999999999999999999 2 234678999999999999999999988
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeecccccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSDFE 493 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~~~ 493 (1387)
+.+ +|| +...|+.||+-|.| +=.+|+|++....+
T Consensus 566 D~d----WNP--------------~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 566 DSD----WNP--------------QVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred CCC----CCh--------------HHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 763 433 77889999999998 34688888876543
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.44 E-value=1e-12 Score=167.60 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=100.5
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCC
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGM 443 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~ 443 (1387)
..+.++||||+++..++.+++.|...++.+..+||++++.+|..++..| +|+..|+|||+++++|+|+|++++||.++.
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~ 523 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDA 523 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCC
Confidence 4578899999999999999999999999999999999999999999999 899999999999999999999999998765
Q ss_pred CccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecc
Q 000621 444 VKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSK 489 (1387)
Q Consensus 444 ~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~ 489 (1387)
.... .|.|..+|+||+|||||...|.|+.+++.
T Consensus 524 eifG-------------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 524 DKEG-------------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cccc-------------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 3211 13456899999999999889999999885
No 130
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.38 E-value=1.1e-12 Score=125.18 Aligned_cols=90 Identities=30% Similarity=0.447 Sum_probs=75.8
Q ss_pred HHHHHHHHcCceeccCCccccCHHHHHhhhcCCChhhHHHHHHHhhh-cchHHHHHHhHHhcCCCCcccccCCchhhhHH
Q 000621 539 MAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR-RLGREGLVLAAVMANASSIFCRVGSDDEKIKA 617 (1387)
Q Consensus 539 ~al~~L~~lgal~~~~~~~~lT~lG~~~~~lpl~p~~~k~ll~~~~~-~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~ 617 (1387)
+|++.|+.+||||.++ .||++|+.|+.||++|++||||+.+..+ +|.+++++|+|+++. .++|..+ ..+.+.
T Consensus 1 ~A~~~L~~LgAld~~~---~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~-~~~~~~~---~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDDDG---RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSV-GDPFPRP---EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCCCC---CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCcCCc---hHHHHH
Confidence 3789999999998754 7999999999999999999999999999 899999999998864 4566433 345566
Q ss_pred HHhhhhhcCC-CCcHHHHH
Q 000621 618 DCLKVQFCHR-NGDLFTLL 635 (1387)
Q Consensus 618 ~~~~~~f~~~-~gD~lt~l 635 (1387)
...+..|.+. .|||++++
T Consensus 74 ~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 74 DAARRRFASGRESDHLTLL 92 (92)
T ss_pred HHHHHHccCCCCCChhhhC
Confidence 6778888888 89999864
No 131
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.37 E-value=6.7e-12 Score=127.64 Aligned_cols=135 Identities=24% Similarity=0.223 Sum_probs=95.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc------cC
Q 000621 170 ILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ------HF 242 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~------~~ 242 (1387)
.+++.|+||+|||++++.++...... ..+++++++|++.++.+..+.+...... ...+.+........ ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE---GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC---CcEEEEEecCcchhHHHHHhcC
Confidence 46778999999999987777665332 4568999999999999999998887643 22344433333322 45
Q ss_pred CCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 243 DSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
..+|+++|++.+.+.+.... ....+++|||||+| ......................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h-~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAH-RLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHH-HHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78999999999988776554 45678999999999 3433333222222333345678899999995
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.36 E-value=2.8e-12 Score=148.37 Aligned_cols=312 Identities=14% Similarity=0.067 Sum_probs=188.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC-CCcc
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVREESRGCY-EDDS 229 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~-~~~~ 229 (1387)
-..+..+.+++..+..+..+++.-.|.+||+++.-....+. ........++..|+.++++.-.+-+.-...... ....
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A 364 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSA 364 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcc
Confidence 34455666777777777788888899999998521111111 112234567777888877543221100000000 0001
Q ss_pred -EEEecCCCcc-----ccCCCcEEEEChhHHHHHhhcCC-----CCCceeEEEEcCccccccchh-HHHHHHHHHHh---
Q 000621 230 -VICYPSFSSA-----QHFDSKVIYMTDHCLLQHFMNDR-----DLSRISCIIVDEAHERSLNTD-LLLALVKDLLC--- 294 (1387)
Q Consensus 230 -vg~~~~~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~-----~l~~l~~IIIDEaHer~~~~d-~l~~~lk~l~~--- 294 (1387)
|..+.+.... ...+.+++|..|.+......... .+-...++++||+|-...-+. .....++.+..
T Consensus 365 ~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~ 444 (1034)
T KOG4150|consen 365 YVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIK 444 (1034)
T ss_pred eeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHH
Confidence 1111111110 12467899999998765543332 344557899999994222221 12222333322
Q ss_pred ---cccCccEEeecccCC--HHHHHHHhcc--CCeeeeecccceeEEE--EecCCCC-CCccchhhHHHHHHHHHHhhhc
Q 000621 295 ---RRFDLRLVIMSATAD--AHQLSKYFYD--CGISHVVGRNFPVDVR--YVPCATA-GTSAVASYVSDVVRMVGEVHTT 364 (1387)
Q Consensus 295 ---~~~~~kiIlmSATl~--~~~~~~~f~~--~~v~~i~gr~~pv~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~i~~~ 364 (1387)
...+++++-.|||+. .+...+.|+- ...+++.|....-+.. |.|.... ........+.+....+.++.
T Consensus 445 ~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i-- 522 (1034)
T KOG4150|consen 445 GFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV-- 522 (1034)
T ss_pred HHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--
Confidence 345799999999973 3445555542 3456666765544443 3333221 11112223333333333333
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcC----CC----CceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCc
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDA----PS----AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGV 435 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~----~~----~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V 435 (1387)
..+-++|.||++++-|+.+...-++ -+ -.+..|.|+-..++|.++.... .|+..-|+|||++|-||||.+.
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 4567899999999988876544332 11 1367789999999999999875 9999999999999999999999
Q ss_pred eEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeE
Q 000621 436 KFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRC 483 (1387)
Q Consensus 436 ~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~ 483 (1387)
+.|+..|+|- |.+++.|..|||||.. +..+
T Consensus 603 DAVl~~GFP~------------------S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 603 DAVLHLGFPG------------------SIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred eeEEEccCch------------------hHHHHHHHhccccccCCCceE
Confidence 9999999954 5599999999999986 5543
No 133
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.36 E-value=2.2e-12 Score=130.62 Aligned_cols=103 Identities=34% Similarity=0.450 Sum_probs=94.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCC
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMV 444 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~ 444 (1387)
.++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.| ++..+|+++|+++++|+|+|++++||.++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~- 105 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL- 105 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC-
Confidence 578999999999999999999998889999999999999999999999 788999999999999999999999998766
Q ss_pred ccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEe
Q 000621 445 KESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRL 486 (1387)
Q Consensus 445 k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L 486 (1387)
+.+..++.|++||+||.| .|.|+.+
T Consensus 106 -----------------~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 106 -----------------PWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred -----------------CCCHHHheecccccccCCCCceEEeC
Confidence 345688999999999998 8888753
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.36 E-value=8e-11 Score=137.47 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=98.0
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCC
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGM 443 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~ 443 (1387)
..+.++||-+-|++.++.+.++|.+.|+.+..+|+....-+|.+++... .|...|||.-|.+-.|+|+|.|..|.-.+-
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec
Confidence 4668999999999999999999999999999999999999999999999 899999999999999999999999975554
Q ss_pred CccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecc
Q 000621 444 VKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSK 489 (1387)
Q Consensus 444 ~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~ 489 (1387)
-|+-+. -|-.+.+|-+|||+|--.|+++.+...
T Consensus 524 DKeGFL-------------Rse~SLIQtIGRAARN~~GkvIlYAD~ 556 (663)
T COG0556 524 DKEGFL-------------RSERSLIQTIGRAARNVNGKVILYADK 556 (663)
T ss_pred Cccccc-------------cccchHHHHHHHHhhccCCeEEEEchh
Confidence 443322 345788999999999999998765443
No 135
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.31 E-value=1.4e-12 Score=120.29 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=69.7
Q ss_pred HhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccC
Q 000621 386 KFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVS 464 (1387)
Q Consensus 386 ~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS 464 (1387)
.|+..++.+..+||++++.+|..+++.| .+...|||||+++++|||+|++++||.++.|. |
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~ 63 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------S 63 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------S
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------C
Confidence 4667899999999999999999999999 88889999999999999999999999988744 5
Q ss_pred HhhHHHHhcccCCCC
Q 000621 465 QSSANQRAGRAGRTE 479 (1387)
Q Consensus 465 ~a~~~QR~GRaGR~~ 479 (1387)
..+|.|++||+||.|
T Consensus 64 ~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 64 PEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHHHHTTSSTTT
T ss_pred HHHHHHHhhcCCCCC
Confidence 599999999999975
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.31 E-value=3.1e-11 Score=130.46 Aligned_cols=158 Identities=20% Similarity=0.156 Sum_probs=106.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccC-CCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc
Q 000621 150 DGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAA-EQSIVCTQPRKIAAISLAQRVREESRGCYEDD 228 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~-~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~ 228 (1387)
...|...|++.+...+.....+++.|+||||||+.+..++.+..... ..+++++.|++.++.|+.+++...+..... .
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~-~ 84 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL-K 84 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe-E
Confidence 34455556655555554437778899999999998777777654322 468999999999999999999887643211 1
Q ss_pred cEEEecCCCc------cccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccE
Q 000621 229 SVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRL 301 (1387)
Q Consensus 229 ~vg~~~~~~~------~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~ki 301 (1387)
.......... ......+++++|++.+.+.+.... ...+++++||||+|... ...+...+...+....+..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL-DGGFGDQLEKLLKLLPKNVQL 163 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh-cCCcHHHHHHHHHhCCccceE
Confidence 1222222111 112223999999999999887765 67788999999999433 213333333333334567899
Q ss_pred EeecccCC
Q 000621 302 VIMSATAD 309 (1387)
Q Consensus 302 IlmSATl~ 309 (1387)
+++|||+.
T Consensus 164 v~~saT~~ 171 (201)
T smart00487 164 LLLSATPP 171 (201)
T ss_pred EEEecCCc
Confidence 99999984
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.30 E-value=3.1e-10 Score=147.91 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccC-CCCHhhhhhhhccC-CCceEEEEecch
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHG-QLSFDEQFCVFKSY-PGRRKVIFATNV 425 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~-~l~~~er~~v~~~f-~g~~kVLVaT~i 425 (1387)
..|.+.+.+.+..+. ..+|++||+++|.+..+.+++.|......+ ...| +.+ +.++.+.| .+...||++|+.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecch
Confidence 456666777776655 467999999999999999999987554444 3333 222 44567778 677889999999
Q ss_pred hhcCCCCC--CceEEEecCCCccccccCCC----------Ccccc--eecccCHhhHHHHhcccCCCC--CCeEEEe
Q 000621 426 AETSLTIP--GVKFVIDSGMVKESYFEPGT----------GMNVL--RVCRVSQSSANQRAGRAGRTE--PGRCYRL 486 (1387)
Q Consensus 426 ae~GIdIp--~V~~VId~g~~k~~~yd~~~----------~~~~L--~~~~iS~a~~~QR~GRaGR~~--~G~~~~L 486 (1387)
+-.|||+| +...||-.++|-..-.||-. |-+.. ...|--.-.+.|-+||.=|.. .|..+.+
T Consensus 704 FwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999997 35566667776432222211 11111 111222356889999999986 6765544
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.26 E-value=1.5e-10 Score=133.18 Aligned_cols=302 Identities=16% Similarity=0.204 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 155 YMYRQDILRRIYGE---QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 155 ~~q~~~i~~~l~~~---~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
..+|+.-+..+-+| +.-||+-|.|+|||+.-.-.+ -+-.++++|++..-..+.|+..++..... ... ..++
T Consensus 304 RpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wst-i~d-~~i~ 377 (776)
T KOG1123|consen 304 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWST-IQD-DQIC 377 (776)
T ss_pred CchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcc-cCc-cceE
Confidence 34555555555444 233444699999998643222 22245788888888889999998887752 222 2233
Q ss_pred EecCC-CccccCCCcEEEEChhHHHHHhhcC---------CCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccE
Q 000621 232 CYPSF-SSAQHFDSKVIYMTDHCLLQHFMND---------RDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRL 301 (1387)
Q Consensus 232 ~~~~~-~~~~~~~~~Ivv~Tpg~Ll~~l~~~---------~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~ki 301 (1387)
..... ......++.|+|.|..|+..--... -.-...+++++||+| . +-......++..+.. +. -
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH-v-vPA~MFRRVlsiv~a---Hc-K 451 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH-V-VPAKMFRRVLSIVQA---HC-K 451 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc-c-chHHHHHHHHHHHHH---Hh-h
Confidence 22222 2223456889999998874211110 023467999999999 2 222222223333322 22 3
Q ss_pred EeecccCC--HHHHH--HHhccCCeeeee-------cccceeE--EEEec-----------CCCCCC---ccchhhHHHH
Q 000621 302 VIMSATAD--AHQLS--KYFYDCGISHVV-------GRNFPVD--VRYVP-----------CATAGT---SAVASYVSDV 354 (1387)
Q Consensus 302 IlmSATl~--~~~~~--~~f~~~~v~~i~-------gr~~pv~--~~~~~-----------~~~~~~---~~~~~~~~~~ 354 (1387)
++++||+- .+.+. +|+-++.+.... |..-.|. ..+-| ...... ....+..-..
T Consensus 452 LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFra 531 (776)
T KOG1123|consen 452 LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRA 531 (776)
T ss_pred ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHH
Confidence 68999952 11111 222221111100 1000010 00111 000000 0000111122
Q ss_pred HHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--CCceEEEEecchhhcCCCC
Q 000621 355 VRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--PGRRKVIFATNVAETSLTI 432 (1387)
Q Consensus 355 ~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~g~~kVLVaT~iae~GIdI 432 (1387)
-+.+...|. ..+.+||||....-.....|-.|.++ .++|..++.+|.+|++.| +....-|+-.-++.++||+
T Consensus 532 CqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDL 605 (776)
T KOG1123|consen 532 CQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDL 605 (776)
T ss_pred HHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccC
Confidence 334444554 36789999999988888888777653 578999999999999999 6788899999999999999
Q ss_pred CCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-------CCeEEEeecccc
Q 000621 433 PGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-------PGRCYRLYSKSD 491 (1387)
Q Consensus 433 p~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-------~G~~~~L~s~~~ 491 (1387)
|..++.|+-.- . --|+.+-.||.||.-|.. ....|.|++++.
T Consensus 606 PEAnvLIQISS----H-------------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 606 PEANVLIQISS----H-------------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred CcccEEEEEcc----c-------------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 99999996321 1 125566779999998873 345566666653
No 139
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.24 E-value=2.3e-11 Score=122.20 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=86.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC-ccccCCCc
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS-SAQHFDSK 245 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~-~~~~~~~~ 245 (1387)
.++..+|...+|+|||..++.-++......+.++|++.|||.+|..+++.+... .+.+..... .....+.-
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~--------~~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL--------PVRFHTNARMRTHFGSSI 74 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS--------SEEEESTTSS----SSSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC--------CcccCceeeeccccCCCc
Confidence 456778889999999997444444445677889999999999988888766432 233322211 22335678
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHH
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAH 311 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~ 311 (1387)
|.++|.+.+.+.+.+...+.++++||+||||-....+=...+.++..... ...++|+||||++..
T Consensus 75 i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 75 IDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp EEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT-
T ss_pred ccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCCC
Confidence 99999999999888866889999999999994333333344444444333 347899999998754
No 140
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.23 E-value=5.1e-10 Score=142.26 Aligned_cols=90 Identities=18% Similarity=0.041 Sum_probs=65.7
Q ss_pred EEEEeCCHHHHHHHHHHhcC------CCCceEeccCCCCHhhhhhhhccC---------------------------CCc
Q 000621 370 ILAFLTSKMEVEWACEKFDA------PSAVALPFHGQLSFDEQFCVFKSY---------------------------PGR 416 (1387)
Q Consensus 370 iLVF~~s~~eie~l~~~L~~------~~~~v~~lh~~l~~~er~~v~~~f---------------------------~g~ 416 (1387)
.||=+.+++.+-.++..|.. ..+.+..|||..+...|..+.+.. .+.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 46777888888777777653 234578899999777766654321 145
Q ss_pred eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCC
Q 000621 417 RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEP 480 (1387)
Q Consensus 417 ~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~ 480 (1387)
..|+|||.+.|.|+|++ .+++|- .+.+..+.+||+||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhccccccc
Confidence 68999999999999994 555552 24556888999999999863
No 141
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=1.6e-10 Score=146.12 Aligned_cols=118 Identities=24% Similarity=0.184 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCC
Q 000621 353 DVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTI 432 (1387)
Q Consensus 353 ~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdI 432 (1387)
.++..+...+ ..+.||||-+.|.+..+.++..|...+++...|++.....|-.-|-+.- ..-.|.||||+|+||.||
T Consensus 616 Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG-~~GaVTIATNMAGRGTDI 692 (1112)
T PRK12901 616 AVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG-QPGTVTIATNMAGRGTDI 692 (1112)
T ss_pred HHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcC-CCCcEEEeccCcCCCcCc
Confidence 3444454454 5788999999999999999999999999888888875433333332222 223799999999999999
Q ss_pred C---Cc-----eEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 433 P---GV-----KFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 433 p---~V-----~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
. +| -+||-+.++... .--.|-.|||||.| ||.+-.+.+-+|
T Consensus 693 kLg~~V~e~GGL~VIgTerheSr------------------RID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 693 KLSPEVKAAGGLAIIGTERHESR------------------RVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred ccchhhHHcCCCEEEEccCCCcH------------------HHHHHHhcccccCCCCCcceEEEEccc
Confidence 5 22 377766555433 44469999999999 999888887654
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.11 E-value=2.8e-10 Score=122.28 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc---------EEEecCCC-
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS---------VICYPSFS- 237 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~---------vg~~~~~~- 237 (1387)
+..+++.+|||||||..+..++.+... ++++++|+..++.|..+.+............ ........
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDD 100 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTE
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccc
Confidence 588888999999999987766655432 8999999999999999999655422111000 00000000
Q ss_pred -----ccccCCCcEEEEChhHHHHHhhcC------------CCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCcc
Q 000621 238 -----SAQHFDSKVIYMTDHCLLQHFMND------------RDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLR 300 (1387)
Q Consensus 238 -----~~~~~~~~Ivv~Tpg~Ll~~l~~~------------~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~k 300 (1387)
.......++.+.|...|....... .....+++||+|||| +.....-...++. .+...
T Consensus 101 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH-~~~~~~~~~~i~~-----~~~~~ 174 (184)
T PF04851_consen 101 ISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH-HYPSDSSYREIIE-----FKAAF 174 (184)
T ss_dssp EEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG-CTHHHHHHHHHHH-----SSCCE
T ss_pred cccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh-hcCCHHHHHHHHc-----CCCCe
Confidence 012246789999999998765431 134577999999999 4444432222222 56778
Q ss_pred EEeecccCC
Q 000621 301 LVIMSATAD 309 (1387)
Q Consensus 301 iIlmSATl~ 309 (1387)
+|+||||+.
T Consensus 175 ~l~lTATp~ 183 (184)
T PF04851_consen 175 ILGLTATPF 183 (184)
T ss_dssp EEEEESS-S
T ss_pred EEEEEeCcc
Confidence 999999974
No 143
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.09 E-value=1.3e-10 Score=107.39 Aligned_cols=80 Identities=36% Similarity=0.476 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCccccee
Q 000621 382 WACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRV 460 (1387)
Q Consensus 382 ~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~ 460 (1387)
.+++.|...++.+..+||++++++|..+++.| .+..+|+++|+++++|+|+|++++||.++.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~----------------- 64 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL----------------- 64 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC-----------------
Confidence 45667777789999999999999999999999 788899999999999999999999998876
Q ss_pred cccCHhhHHHHhcccCCCC
Q 000621 461 CRVSQSSANQRAGRAGRTE 479 (1387)
Q Consensus 461 ~~iS~a~~~QR~GRaGR~~ 479 (1387)
|.|..+|.|++||+||.|
T Consensus 65 -~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 -PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -CCCHHHHHHhhcccccCC
Confidence 345699999999999975
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.09 E-value=6.1e-10 Score=139.91 Aligned_cols=324 Identities=14% Similarity=0.097 Sum_probs=196.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEec--
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYP-- 234 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~-- 234 (1387)
|-+.+...-+.++.+++.+|+|||||.++-..++. ....++++++.|.-+.+..++..+...++.. .|..+.-..
T Consensus 1148 qtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge 1224 (1674)
T KOG0951|consen 1148 QTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGE 1224 (1674)
T ss_pred eEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCc
Confidence 44555555578899999999999999887776665 3345689999999999988887777766433 333332222
Q ss_pred -CCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccch----hHHHHHHHHHHhcccCccEEeecccC-
Q 000621 235 -SFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNT----DLLLALVKDLLCRRFDLRLVIMSATA- 308 (1387)
Q Consensus 235 -~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~----d~l~~~lk~l~~~~~~~kiIlmSATl- 308 (1387)
..+.+.-...+|+++||+..-.. + ....+++.|.||.|.-+-.. .....+.......-+++|++.+|..+
T Consensus 1225 ~s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1225 TSLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLA 1300 (1674)
T ss_pred cccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhc
Confidence 22223335689999999986433 2 56788999999999422110 11111112222334678999998875
Q ss_pred CHHHHHHHhccCCeeeeec--ccceeEEEEecCCCCCCcc-chhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHH
Q 000621 309 DAHQLSKYFYDCGISHVVG--RNFPVDVRYVPCATAGTSA-VASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACE 385 (1387)
Q Consensus 309 ~~~~~~~~f~~~~v~~i~g--r~~pv~~~~~~~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~ 385 (1387)
++..+ -++....++.++. |..|.+++........... ......-....+.... ..+.+.+||+|+++.+..++.
T Consensus 1301 na~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~ 1377 (1674)
T KOG0951|consen 1301 NARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAV 1377 (1674)
T ss_pred cchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhh
Confidence 55555 3344455666553 4445554443322210000 0000111111221111 467899999999999988765
Q ss_pred HhcC----------------------CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEEecC
Q 000621 386 KFDA----------------------PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSG 442 (1387)
Q Consensus 386 ~L~~----------------------~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g 442 (1387)
.|-. .......=|-+|+..++..+-..| .|.+.|+|...- ..|+-...- .||-.|
T Consensus 1378 ~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~-lVvvmg 1455 (1674)
T KOG0951|consen 1378 DLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAH-LVVVMG 1455 (1674)
T ss_pred ccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccce-EEEEec
Confidence 4421 011111229999999999888888 799988887766 777766433 333333
Q ss_pred CCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccc--cc-ccCCCCCCc
Q 000621 443 MVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKS--DF-ETRPLNQEP 501 (1387)
Q Consensus 443 ~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~--~~-~~~~~~~~p 501 (1387)
+.+||.+... -.+.+-++..|+.|+|.| .|+|+.+.... +| ..+...+.|
T Consensus 1456 ---t~~ydg~e~~----~~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1456 ---TQYYDGKEHS----YEDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred ---ceeecccccc----cccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 3467665432 124566899999999998 67888776543 33 234444444
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.07 E-value=1.1e-08 Score=136.03 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCC--ceEeccCCCCHhhhhhhhccC-CCceEEEEecc
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSA--VALPFHGQLSFDEQFCVFKSY-PGRRKVIFATN 424 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~--~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ 424 (1387)
..|...+.+.+..+.. ..+|++|||++|.+..+.+++.|..... ....+--+++...|.++.+.| .++..||++|.
T Consensus 734 ~~~~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~ 812 (928)
T PRK08074 734 EEYIEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTS 812 (928)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecC
Confidence 4556666777766654 4578999999999999999999874321 111222234445577888888 67788999999
Q ss_pred hhhcCCCCCC--ceEEEecCCCccccccCCC----------Ccccce--ecccCHhhHHHHhcccCCCC--CCeEEEe
Q 000621 425 VAETSLTIPG--VKFVIDSGMVKESYFEPGT----------GMNVLR--VCRVSQSSANQRAGRAGRTE--PGRCYRL 486 (1387)
Q Consensus 425 iae~GIdIp~--V~~VId~g~~k~~~yd~~~----------~~~~L~--~~~iS~a~~~QR~GRaGR~~--~G~~~~L 486 (1387)
.+..|||+|+ ++.||-.++|-..--||.. |-+... ..|...-...|-+||.=|.. .|..+.|
T Consensus 813 sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 813 SFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred cccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 9999999997 4888888876421111111 111110 11223346789999999986 6655543
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.07 E-value=3.4e-09 Score=134.16 Aligned_cols=133 Identities=13% Similarity=0.074 Sum_probs=89.6
Q ss_pred cCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc---------ccCCCc
Q 000621 175 GETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA---------QHFDSK 245 (1387)
Q Consensus 175 a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~---------~~~~~~ 245 (1387)
+-+|||||..+.+.+.+. ...++++|+++|...++.|+.+++.+.++.. ..+.+....... .....+
T Consensus 167 ~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~---~v~~lhS~l~~~~R~~~w~~~~~G~~~ 242 (665)
T PRK14873 167 ALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAG---DVAVLSAGLGPADRYRRWLAVLRGQAR 242 (665)
T ss_pred cCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCC---cEEEECCCCCHHHHHHHHHHHhCCCCc
Confidence 346999999888876443 4457789999999999999999999887411 122232222111 233578
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHH----HHHHHhcccCccEEeecccCCHHHHHHHh
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLAL----VKDLLCRRFDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~----lk~l~~~~~~~kiIlmSATl~~~~~~~~f 317 (1387)
|+++|-..++ -.+.++++|||||-|+-+...+-..-+ +-.......+..+|+.|||+..+.+...-
T Consensus 243 IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 243 VVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred EEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 9999966554 257899999999999655443311110 11222234678999999999998876543
No 147
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.07 E-value=8.2e-09 Score=124.97 Aligned_cols=303 Identities=16% Similarity=0.195 Sum_probs=176.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHH--ccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCc-----
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLAD--SGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS----- 238 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~--~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~----- 238 (1387)
.++-+.|+.-+-|=|||+|...++.- ...+..+.-+|++|.-.|. .....++++. +....+.|++..+.
T Consensus 184 engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~---P~l~~~~~~Gdk~eR~~~~ 259 (971)
T KOG0385|consen 184 ENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFT---PSLNVVVYHGDKEERAALR 259 (971)
T ss_pred hcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhC---CCcceEEEeCCHHHHHHHH
Confidence 34455677789999999984444321 1123356788888986654 3444555543 33334445433211
Q ss_pred ---cccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHH-HHHHHHhcccCccEEeecccC------
Q 000621 239 ---AQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLA-LVKDLLCRRFDLRLVIMSATA------ 308 (1387)
Q Consensus 239 ---~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~-~lk~l~~~~~~~kiIlmSATl------ 308 (1387)
......+|+++|.++.++.-.-- .--+.+++|||||| |.-+....+. .++.+ .-..-+++|.|+
T Consensus 260 r~~~~~~~fdV~iTsYEi~i~dk~~l-k~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f----~~~nrLLlTGTPLQNNL~ 333 (971)
T KOG0385|consen 260 RDIMLPGRFDVCITSYEIAIKDKSFL-KKFNWRYLVIDEAH-RIKNEKSKLSKILREF----KTDNRLLLTGTPLQNNLH 333 (971)
T ss_pred HHhhccCCCceEeehHHHHHhhHHHH-hcCCceEEEechhh-hhcchhhHHHHHHHHh----cccceeEeeCCcccccHH
Confidence 12236899999999988652111 11246899999999 8877655443 23332 233457888992
Q ss_pred ---------------CHHHHHHHhccCCee---------eeeccc-------------cee-E--EEEecCCCC------
Q 000621 309 ---------------DAHQLSKYFYDCGIS---------HVVGRN-------------FPV-D--VRYVPCATA------ 342 (1387)
Q Consensus 309 ---------------~~~~~~~~f~~~~v~---------~i~gr~-------------~pv-~--~~~~~~~~~------ 342 (1387)
+.+.|..||...... +...+. .|. . ..|.+-...
T Consensus 334 ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~ 413 (971)
T KOG0385|consen 334 ELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYK 413 (971)
T ss_pred HHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHH
Confidence 235566777531100 000000 000 0 111110000
Q ss_pred -----------CCc----------------------------cchhhH--HH------HHHHHHHhhh--ccCCCcEEEE
Q 000621 343 -----------GTS----------------------------AVASYV--SD------VVRMVGEVHT--TEKEGTILAF 373 (1387)
Q Consensus 343 -----------~~~----------------------------~~~~~~--~~------~~~~l~~i~~--~~~~g~iLVF 373 (1387)
..+ ...+|. +. ++..+..++. ...+.++|||
T Consensus 414 ~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIF 493 (971)
T KOG0385|consen 414 AILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIF 493 (971)
T ss_pred HHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEe
Confidence 000 000000 00 0011111111 1356789999
Q ss_pred eCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--CC--ceEEEEecchhhcCCCCCCceEEEecCCCccccc
Q 000621 374 LTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--PG--RRKVIFATNVAETSLTIPGVKFVIDSGMVKESYF 449 (1387)
Q Consensus 374 ~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~g--~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~y 449 (1387)
-.=....+-+-.+..-.++...-+.|+++.++|...++.| ++ +.-.+++|-+.+-|||+-..+.||-++- -+
T Consensus 494 SQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDS----DW 569 (971)
T KOG0385|consen 494 SQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDS----DW 569 (971)
T ss_pred HHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecC----CC
Confidence 6554444445455555788899999999999999999999 34 4467899999999999999999995533 34
Q ss_pred cCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc
Q 000621 450 EPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 450 d~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 493 (1387)
||... -++.+|+-|.|-..+=.+|+|++....+
T Consensus 570 NPQ~D-----------LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 570 NPQVD-----------LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred Cchhh-----------hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 44333 3556888888888899999999987543
No 148
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.00 E-value=5.9e-08 Score=121.21 Aligned_cols=299 Identities=19% Similarity=0.203 Sum_probs=176.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc-cCCCc
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ-HFDSK 245 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~-~~~~~ 245 (1387)
.+.+.+|.||.|||||+++..|+.+.......+++++..|+.|+.+++.++.... .. ..+-|........ ....+
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~--l~--gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG--LS--GFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC--CC--cceeeeccccccccccccC
Confidence 6789999999999999999999876533556799999999999999999998753 11 1223322211111 11245
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccch---------hHHHHHHHHHHhcccCccEEeecccCCHHHHH--
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNT---------DLLLALVKDLLCRRFDLRLVIMSATADAHQLS-- 314 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~---------d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~-- 314 (1387)
-+++.-+.|.+.. ...+.++++|||||+-. .+.. .....+++.+. +..-++|+|-||++...+.
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~s-vL~qL~S~Tm~~~~~v~~~L~~lI--~~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMS-VLNQLFSPTMRQREEVDNLLKELI--RNAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHH-HHHHHhHHHHhhHHHHHHHHHHHH--HhCCeEEEecCCCCHHHHHHH
Confidence 6666667776653 33678899999999982 2221 11112222222 2345899999999866432
Q ss_pred HHh-ccCCeeeeecc----ccee-EEEEecCCC-------------C-CC----------ccchhhH---HHHHHHHHHh
Q 000621 315 KYF-YDCGISHVVGR----NFPV-DVRYVPCAT-------------A-GT----------SAVASYV---SDVVRMVGEV 361 (1387)
Q Consensus 315 ~~f-~~~~v~~i~gr----~~pv-~~~~~~~~~-------------~-~~----------~~~~~~~---~~~~~~l~~i 361 (1387)
..+ ++.++..+.+. .|.- .-.+.+.-. . .. .....+. ..-...+..-
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~ 278 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR 278 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH
Confidence 223 22233222211 1110 001111000 0 00 0000000 1111111111
Q ss_pred hhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCceEEEEecchhhcCCCCCCceEEEec
Q 000621 362 HTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRRKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 362 ~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
+ ..+..|-||++|...++.+++........++.++|.-+..+ + +.| ++.+|++=|++...|+++....+=--+
T Consensus 279 L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W-~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 279 L--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW-KKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred H--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc-cceeEEEEeceEEEEeccchhhceEEE
Confidence 1 45678889999999999998888877888888888655542 2 223 468999999999999999765432222
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 493 (1387)
...+...+-| +..+..|+.||+-.......|..+......
T Consensus 352 ~yvk~~~~gp------------d~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~ 391 (824)
T PF02399_consen 352 AYVKPMSYGP------------DMVSVYQMLGRVRSLLDNEIYVYIDASGAR 391 (824)
T ss_pred EEecCCCCCC------------cHHHHHHHHHHHHhhccCeEEEEEeccccc
Confidence 2333222211 224577999999777778888777765443
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.99 E-value=1.4e-07 Score=118.36 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-----CCceEEEEecc
Q 000621 350 YVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-----PGRRKVIFATN 424 (1387)
Q Consensus 350 ~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-----~g~~kVLVaT~ 424 (1387)
+.+...+.+..++. ..+|.+||.++|...++.+++.|...--..+...|..++ +...++.| .|...||++|+
T Consensus 454 ~~~~~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~ 530 (636)
T TIGR03117 454 WLENVSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAG 530 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCC
Confidence 55556666666654 467899999999999999999986422133445565432 23344555 25689999999
Q ss_pred hhhcCCCC----------CCceEEEecCCCccccccCC--------CCcccceecccCHhhHHHHhcccCCCC
Q 000621 425 VAETSLTI----------PGVKFVIDSGMVKESYFEPG--------TGMNVLRVCRVSQSSANQRAGRAGRTE 479 (1387)
Q Consensus 425 iae~GIdI----------p~V~~VId~g~~k~~~yd~~--------~~~~~L~~~~iS~a~~~QR~GRaGR~~ 479 (1387)
.+-.|||+ +.+..||-.-+|=.. -||- .|-......|-..-...|-+||.=|..
T Consensus 531 sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~ 602 (636)
T TIGR03117 531 GAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHP 602 (636)
T ss_pred ccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecC
Confidence 99999999 237888876776322 2221 111211122333445678888888863
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.94 E-value=2.3e-07 Score=119.85 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcC-CCCceEeccCCCCHhhhhhhhccC-----CCceEEEE
Q 000621 348 ASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA-PSAVALPFHGQLSFDEQFCVFKSY-----PGRRKVIF 421 (1387)
Q Consensus 348 ~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~-~~~~v~~lh~~l~~~er~~v~~~f-----~g~~kVLV 421 (1387)
..+...+.+.+..+.. .+|.+|||++|....+.++..|.. .+.. +..+|.. .+..+++.| .++..||+
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~ 590 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLF 590 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEE
Confidence 4566777777777776 445589999999999999998864 2333 3345543 344555444 36778999
Q ss_pred ecchhhcCCCCCC--ceEEEecCCCccccccCCC----------Ccccce--ecccCHhhHHHHhcccCCCC--CCeEEE
Q 000621 422 ATNVAETSLTIPG--VKFVIDSGMVKESYFEPGT----------GMNVLR--VCRVSQSSANQRAGRAGRTE--PGRCYR 485 (1387)
Q Consensus 422 aT~iae~GIdIp~--V~~VId~g~~k~~~yd~~~----------~~~~L~--~~~iS~a~~~QR~GRaGR~~--~G~~~~ 485 (1387)
+|..+..|||+|+ ++.||-.++|-..--||.. |-+... ..|--.-...|-+||.=|.. .|..+.
T Consensus 591 g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~i 670 (697)
T PRK11747 591 GLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTI 670 (697)
T ss_pred EeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEE
Confidence 9999999999987 7899988887532222211 111110 01212235789999999975 666554
Q ss_pred e
Q 000621 486 L 486 (1387)
Q Consensus 486 L 486 (1387)
+
T Consensus 671 l 671 (697)
T PRK11747 671 L 671 (697)
T ss_pred E
Confidence 4
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=98.93 E-value=1.7e-09 Score=131.26 Aligned_cols=320 Identities=17% Similarity=0.161 Sum_probs=173.0
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhc---C-CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHH
Q 000621 141 IVRECKRLEDGLPIYMYRQDILRRIYG---E-QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 141 ll~~l~~~~~~lP~~~q~~~i~~~l~~---~-~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~r 216 (1387)
+..++.-.....|-+.||.+|-.++.+ | +--+| +..|+|||...+... +.. . ..+|++++|...|-.|..+.
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLkis-Eal-a-~~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLKIS-EAL-A-AARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHHHH-HHH-h-hhheEeecchHHHHHHHHHH
Confidence 334444455677888899999888864 2 22233 467999998765543 221 1 26899999999998888877
Q ss_pred HHHHhcCCCCCccEEEecCC-----Ccc------------------------ccCCCcEEEEChhHHHHHhhcC-CCCCc
Q 000621 217 VREESRGCYEDDSVICYPSF-----SSA------------------------QHFDSKVIYMTDHCLLQHFMND-RDLSR 266 (1387)
Q Consensus 217 v~~~~~~~~~~~~vg~~~~~-----~~~------------------------~~~~~~Ivv~Tpg~Ll~~l~~~-~~l~~ 266 (1387)
+..... ........+..+. ++. ...+--|+|+|.+.+.+.-... ..+..
T Consensus 226 w~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~ 304 (1518)
T COG4889 226 WTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDE 304 (1518)
T ss_pred HhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCC
Confidence 766431 1111111111000 000 0012358999999887654322 36889
Q ss_pred eeEEEEcCccccccchhHHHHHHHHHHhc-----ccCccEEeecccCCH--HHHHHHhcc--------------CCeeee
Q 000621 267 ISCIIVDEAHERSLNTDLLLALVKDLLCR-----RFDLRLVIMSATADA--HQLSKYFYD--------------CGISHV 325 (1387)
Q Consensus 267 l~~IIIDEaHer~~~~d~l~~~lk~l~~~-----~~~~kiIlmSATl~~--~~~~~~f~~--------------~~v~~i 325 (1387)
+++||.|||| |+...-..-.--..+... -+..+.+.|+||+-. +....--.+ .+.++-
T Consensus 305 fDliicDEAH-RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 305 FDLIICDEAH-RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred ccEEEecchh-ccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 9999999999 654321110000000000 022466788999421 000000000 001111
Q ss_pred ecc----------cceeEEEEecCCC---------C--CCccchhhHHHHHHHHHHhhhc--------------cCCCcE
Q 000621 326 VGR----------NFPVDVRYVPCAT---------A--GTSAVASYVSDVVRMVGEVHTT--------------EKEGTI 370 (1387)
Q Consensus 326 ~gr----------~~pv~~~~~~~~~---------~--~~~~~~~~~~~~~~~l~~i~~~--------------~~~g~i 370 (1387)
.|. .|.|-+.-..... + ..+...+....++-.-.-+.+. .+-.+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 110 1112111111100 0 0000011111111111111111 122467
Q ss_pred EEEeCCHHHHHHHHHHhc-----------C--CC--CceEeccCCCCHhhhhhhhc---cC-CCceEEEEecchhhcCCC
Q 000621 371 LAFLTSKMEVEWACEKFD-----------A--PS--AVALPFHGQLSFDEQFCVFK---SY-PGRRKVIFATNVAETSLT 431 (1387)
Q Consensus 371 LVF~~s~~eie~l~~~L~-----------~--~~--~~v~~lh~~l~~~er~~v~~---~f-~g~~kVLVaT~iae~GId 431 (1387)
+-||.+.++...+++.+. + .+ +.+-...|.|...+|...+. .| +.+.+||----.+..|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 889888887766655442 1 23 34555668899888866554 34 678899988889999999
Q ss_pred CCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEE
Q 000621 432 IPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCY 484 (1387)
Q Consensus 432 Ip~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~ 484 (1387)
+|..+.||- +||++.| -+.+|-+||+.|-.+|+-|
T Consensus 544 VPaLDsViF--------f~pr~sm----------VDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 544 VPALDSVIF--------FDPRSSM----------VDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ccccceEEE--------ecCchhH----------HHHHHHHHHHHHhCcCCcc
Confidence 999999994 5565533 5678999999998777644
No 152
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.93 E-value=9.4e-09 Score=129.01 Aligned_cols=107 Identities=23% Similarity=0.216 Sum_probs=78.9
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCce-EEEEecchhhcCCCC---CCce----
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGRR-KVIFATNVAETSLTI---PGVK---- 436 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~~-kVLVaT~iae~GIdI---p~V~---- 436 (1387)
..++++||-..+.+..+.+.+.|.+.+++...+.+.-. +|+.-+-...|.. -|-||||+|++|-|| ++..
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~ 504 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVME 504 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHH
Confidence 67899999999999999999999999988877777754 3333333333433 688999999999999 3321
Q ss_pred ----EEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-CCeEEEeecccc
Q 000621 437 ----FVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 437 ----~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-~G~~~~L~s~~~ 491 (1387)
+||-+......+.| .|-.||+||.| ||..-.+.+-++
T Consensus 505 lGGL~VIgTERhESRRID------------------nQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 505 LGGLHVIGTERHESRRID------------------NQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred hCCcEEEecccchhhHHH------------------HHhhcccccCCCcchhhhhhhhHH
Confidence 56655554444443 39999999999 998766666543
No 153
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.68 E-value=1.9e-07 Score=118.75 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=99.6
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--CC--ceEEEEecchhhcCCCCCCceEEEe
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--PG--RRKVIFATNVAETSLTIPGVKFVID 440 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~g--~~kVLVaT~iae~GIdIp~V~~VId 440 (1387)
..+.+||||-.=+.-.+-++++|...+++.--+.|++..+.|+.+++.| ++ ..-.|+||-+.+-|||+-..+.||-
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 3467999998888888999999999999999999999999999999999 33 4578999999999999999999986
Q ss_pred cCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeeccccccc-CCCCCCcchhccchHHHHHHHH
Q 000621 441 SGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSDFET-RPLNQEPEIHRVHLGIAVLRIL 516 (1387)
Q Consensus 441 ~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~~~~-~~~~~~pEi~r~~L~~~~L~l~ 516 (1387)
|+- -+||.+.+ |-..||-|-| .=.+|||+|+..++. |.+.. -+..-|+.++++..
T Consensus 777 FDS----DWNPQNDL--------------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 777 FDS----DWNPQNDL--------------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQRM 835 (1373)
T ss_pred eCC----CCCcchHH--------------HHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHhh
Confidence 643 45664433 5555555554 557999999987753 21100 11234666676654
Q ss_pred H
Q 000621 517 A 517 (1387)
Q Consensus 517 ~ 517 (1387)
.
T Consensus 836 ~ 836 (1373)
T KOG0384|consen 836 D 836 (1373)
T ss_pred c
Confidence 3
No 154
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.68 E-value=1.4e-06 Score=106.69 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhc-CCCCceEeccCCCCHhhhhhhhccC-CCc--eEEEEecchhhcCCCCCCceEEEec
Q 000621 366 KEGTILAFLTSKMEVEWACEKFD-APSAVALPFHGQLSFDEQFCVFKSY-PGR--RKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~-~~~~~v~~lh~~l~~~er~~v~~~f-~g~--~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
.+.++|+|..++....-+-..|. ..++..+.+.|..+...|....+.| ++. .-.|++|-+.+-|+|+-+.+-||-+
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 45689999999999988888888 6899999999999999999999999 333 3568899999999999999999976
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 493 (1387)
+. -+||.+. .++.-|+=|-|-...=.+|||.+....+
T Consensus 625 DP----dWNPStD-----------~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 625 DP----DWNPSTD-----------NQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CC----CCCCccc-----------hHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 54 4555443 3455677777766677899999987554
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.66 E-value=1.1e-06 Score=102.39 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=163.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
+|. |++-+.-+|+.+.-+++.-+-|-|||.|++....- +.....++|++|--. --..++.+..++..+.. +-
T Consensus 200 lPF--QreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y--yraEwplliVcPAsv-rftWa~al~r~lps~~p---i~ 271 (689)
T KOG1000|consen 200 LPF--QREGVIFALERGGRILLADEMGLGKTIQALAIARY--YRAEWPLLIVCPASV-RFTWAKALNRFLPSIHP---IF 271 (689)
T ss_pred Cch--hhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH--HhhcCcEEEEecHHH-hHHHHHHHHHhcccccc---eE
Confidence 454 89999999998888888999999999986554321 223456888889743 33566666666544432 11
Q ss_pred EecCCCcc---ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccc-----hhHHHHHHHHHHhcccCccEEe
Q 000621 232 CYPSFSSA---QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLN-----TDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 232 ~~~~~~~~---~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~-----~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
...+..+. ......|.|++.++|..+- .--.-..+.+||+||.|. .-+ +-....+++. -.++|+
T Consensus 272 vv~~~~D~~~~~~t~~~v~ivSye~ls~l~-~~l~~~~~~vvI~DEsH~-Lk~sktkr~Ka~~dllk~------akhvIL 343 (689)
T KOG1000|consen 272 VVDKSSDPLPDVCTSNTVAIVSYEQLSLLH-DILKKEKYRVVIFDESHM-LKDSKTKRTKAATDLLKV------AKHVIL 343 (689)
T ss_pred EEecccCCccccccCCeEEEEEHHHHHHHH-HHHhcccceEEEEechhh-hhccchhhhhhhhhHHHH------hhheEE
Confidence 11121111 1234678899988875322 111233489999999992 211 1222222222 247899
Q ss_pred ecccCCHHHHHH-----------Hhcc---CCeeeeeccccee-------------------------------------
Q 000621 304 MSATADAHQLSK-----------YFYD---CGISHVVGRNFPV------------------------------------- 332 (1387)
Q Consensus 304 mSATl~~~~~~~-----------~f~~---~~v~~i~gr~~pv------------------------------------- 332 (1387)
+|.|+....=.+ +|.+ -..-...|+..+.
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999953221110 1100 0000000111110
Q ss_pred --EEEEecCCCC-----------CCccch------------hhH---HHHHHHHHH-hh-----hccCCCcEEEEeCCHH
Q 000621 333 --DVRYVPCATA-----------GTSAVA------------SYV---SDVVRMVGE-VH-----TTEKEGTILAFLTSKM 378 (1387)
Q Consensus 333 --~~~~~~~~~~-----------~~~~~~------------~~~---~~~~~~l~~-i~-----~~~~~g~iLVF~~s~~ 378 (1387)
.+.|.-.... ..+... .|. ..++..+.+ +. -..++.+.+||+.-..
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 0111110000 000000 000 001111111 11 1246779999999999
Q ss_pred HHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--CCce-EEEEecchhhcCCCCCCceEEEecCCCccc
Q 000621 379 EVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--PGRR-KVIFATNVAETSLTIPGVKFVIDSGMVKES 447 (1387)
Q Consensus 379 eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~g~~-kVLVaT~iae~GIdIp~V~~VId~g~~k~~ 447 (1387)
-.+.+...+.+.++....+.|..++.+|...-+.| +.+. --|++-.++++|+|+...+.||-..++.++
T Consensus 504 vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 504 VLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred HHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 99999999999999999999999999999999999 4444 446777899999999999999988775544
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.61 E-value=3.1e-06 Score=109.87 Aligned_cols=134 Identities=15% Similarity=0.210 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCC-ceEeccCCCCHhhhhhhhccC-C-CceEEEEecch
Q 000621 349 SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSA-VALPFHGQLSFDEQFCVFKSY-P-GRRKVIFATNV 425 (1387)
Q Consensus 349 ~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~-~v~~lh~~l~~~er~~v~~~f-~-g~~kVLVaT~i 425 (1387)
.+.......+..+... .+|.+|||+||.+..+.+++.+..... ..+..+|..+.. ..++.| . +..-++|+|..
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gs 537 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGS 537 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeecc
Confidence 4556666777776664 455999999999999999999986554 345566665544 555666 2 22289999999
Q ss_pred hhcCCCCCCc--eEEEecCCCccccccC----------CCCcc--cceecccCHhhHHHHhcccCCCC--CCeEEEe
Q 000621 426 AETSLTIPGV--KFVIDSGMVKESYFEP----------GTGMN--VLRVCRVSQSSANQRAGRAGRTE--PGRCYRL 486 (1387)
Q Consensus 426 ae~GIdIp~V--~~VId~g~~k~~~yd~----------~~~~~--~L~~~~iS~a~~~QR~GRaGR~~--~G~~~~L 486 (1387)
+..|||+|+= +.||-.|+|=...-|| +.|-. .....|..--...|-+||+=|.. .|.++.+
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999874 7777778864322222 11100 11222334467889999999975 6666655
No 157
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.59 E-value=3.5e-06 Score=106.13 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=67.2
Q ss_pred CCCCceEeccCCCCHhhhhhhhccC--C-Cc-eEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccC
Q 000621 389 APSAVALPFHGQLSFDEQFCVFKSY--P-GR-RKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVS 464 (1387)
Q Consensus 389 ~~~~~v~~lh~~l~~~er~~v~~~f--~-g~-~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS 464 (1387)
-.|..++.+||.|+..+|..+.+.| + +. .-.+.+|-+.+.||++=+..-||-++. .+||
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~----dWNP------------- 679 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP----DWNP------------- 679 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC----CCCc-------------
Confidence 3589999999999999999999999 2 33 455677889999999999999997765 4555
Q ss_pred HhhHHHHhcccCCCC---CCeEEEeecccc
Q 000621 465 QSSANQRAGRAGRTE---PGRCYRLYSKSD 491 (1387)
Q Consensus 465 ~a~~~QR~GRaGR~~---~G~~~~L~s~~~ 491 (1387)
+.=.|-++||=|.| +-..|+|.+...
T Consensus 680 -a~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 680 -AVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred -hhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 44457777777776 778889988764
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=1.7e-06 Score=112.57 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCC-------ceEeccCCCCHhhhhhhhccC-C----Cc
Q 000621 349 SYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSA-------VALPFHGQLSFDEQFCVFKSY-P----GR 416 (1387)
Q Consensus 349 ~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~-------~v~~lh~~l~~~er~~v~~~f-~----g~ 416 (1387)
.+...+...+..+... .+|.+|||+||....+.+++.+...+. ..+..-+. ...++..+++.| . +.
T Consensus 505 ~~~~~l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~ 582 (705)
T TIGR00604 505 SLVRNLGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGR 582 (705)
T ss_pred HHHHHHHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCC
Confidence 4556666666666653 468999999999999999888765332 11111111 114667788877 2 45
Q ss_pred eEEEEec--chhhcCCCCCC--ceEEEecCCCccccccCCCC--ccccee--------cc---cCHhhHHHHhcccCCCC
Q 000621 417 RKVIFAT--NVAETSLTIPG--VKFVIDSGMVKESYFEPGTG--MNVLRV--------CR---VSQSSANQRAGRAGRTE 479 (1387)
Q Consensus 417 ~kVLVaT--~iae~GIdIp~--V~~VId~g~~k~~~yd~~~~--~~~L~~--------~~---iS~a~~~QR~GRaGR~~ 479 (1387)
-.|++|+ ..+..|||++| .+.||-.|+|-....||... +..+.. .| ..-....|-+||+=|..
T Consensus 583 gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~ 662 (705)
T TIGR00604 583 GAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHK 662 (705)
T ss_pred ceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCc
Confidence 5799999 89999999987 78999899987433332211 111100 11 11245679999999987
Q ss_pred CCe
Q 000621 480 PGR 482 (1387)
Q Consensus 480 ~G~ 482 (1387)
.-.
T Consensus 663 ~D~ 665 (705)
T TIGR00604 663 DDY 665 (705)
T ss_pred Cce
Confidence 433
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.37 E-value=6.9e-05 Score=90.06 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=152.9
Q ss_pred CCcEEEEChhHHHHHhhc------CC-CCCceeEEEEcCccc-cccchhHHHHHHHHHHhccc-----------------
Q 000621 243 DSKVIYMTDHCLLQHFMN------DR-DLSRISCIIVDEAHE-RSLNTDLLLALVKDLLCRRF----------------- 297 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~------~~-~l~~l~~IIIDEaHe-r~~~~d~l~~~lk~l~~~~~----------------- 297 (1387)
+++|++++|=-|-..+.. +. .|+.+.++|||.||- -+.+.+.+..+++.+...+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 579999999777665553 11 899999999999993 33455666666665544331
Q ss_pred ----CccEEeecccCCHHHHH---HHhcc-CCeeeee----------cccceeEEEEecCCCCC-CccchhhHHHHHHHH
Q 000621 298 ----DLRLVIMSATADAHQLS---KYFYD-CGISHVV----------GRNFPVDVRYVPCATAG-TSAVASYVSDVVRMV 358 (1387)
Q Consensus 298 ----~~kiIlmSATl~~~~~~---~~f~~-~~v~~i~----------gr~~pv~~~~~~~~~~~-~~~~~~~~~~~~~~l 358 (1387)
=.|+|++|+..+++..+ .+..| .+.+.+. .-..++...|....... .........--...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 16999999998876432 32222 1111111 11123333333211110 000011111111112
Q ss_pred -HHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchh--hcCCCCCC
Q 000621 359 -GEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVA--ETSLTIPG 434 (1387)
Q Consensus 359 -~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~ia--e~GIdIp~ 434 (1387)
-.+......+.+|||+|+--+--++-+.|++.++..+.+|--.+..+-.++-..| .|+.+||+-|-=+ =+=..|.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 2222246678999999999999999999999999999999999999988888888 9999999999532 34467889
Q ss_pred ceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCC----CCCCeEEEeecccccc
Q 000621 435 VKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGR----TEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 435 V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR----~~~G~~~~L~s~~~~~ 493 (1387)
|+.||-+|+|..+.|- .+.....+.... .+.+.|..||++-|..
T Consensus 371 i~~viFY~~P~~p~fY---------------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFY---------------SELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred CcEEEEECCCCChhHH---------------HHHHhhhcccccccccccCceEEEEecHhHHH
Confidence 9999999999866441 444454444432 2368999999987653
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.18 E-value=3.8e-05 Score=94.48 Aligned_cols=112 Identities=20% Similarity=0.276 Sum_probs=89.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCC---CceEEEEecchhhcCCCCCCceEEEecC
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYP---GRRKVIFATNVAETSLTIPGVKFVIDSG 442 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~---g~~kVLVaT~iae~GIdIp~V~~VId~g 442 (1387)
.+.+||||-.=-...+-+-..|.-.++....|.|+.+-.+|+.+++.|. .-.-.|++|-+.+-|||+-..++||-++
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 4578999977666666666677778899999999999999999999993 3346789999999999999999999776
Q ss_pred CCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccccc
Q 000621 443 MVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDF 492 (1387)
Q Consensus 443 ~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 492 (1387)
. -|||... -++.-|+-|.|-+.|=.+|+|+++...
T Consensus 856 ~----dFNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 856 I----DFNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred c----CCCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcH
Confidence 6 3444222 456678888888889999999998754
No 161
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.03 E-value=0.00013 Score=93.33 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=78.2
Q ss_pred CcEEEEeCCHHHHHHHHHHhcCC---CCceEeccCCCCHhhhhhhhccC-CC-ceEE-EEecchhhcCCCCCCceEEEec
Q 000621 368 GTILAFLTSKMEVEWACEKFDAP---SAVALPFHGQLSFDEQFCVFKSY-PG-RRKV-IFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 368 g~iLVF~~s~~eie~l~~~L~~~---~~~v~~lh~~l~~~er~~v~~~f-~g-~~kV-LVaT~iae~GIdIp~V~~VId~ 441 (1387)
.++||||.=+..++-+...|.+. .+....+.|+.++.+|.++.++| ++ .++| +++|-+.+-|+|+-+.+.||-.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFv 1420 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFV 1420 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEE
Confidence 48999999999999888877653 34455789999999999999999 44 5655 5678899999999999999943
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeecccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSD 491 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~ 491 (1387)
.- -+||-+. .|-.-||-|-| .=-+|||+++..
T Consensus 1421 EH----DWNPMrD--------------LQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1421 EH----DWNPMRD--------------LQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred ec----CCCchhh--------------HHHHHHHHhhcCceeeeeeeehhccc
Confidence 21 2344222 26566666655 445788877664
No 162
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.03 E-value=0.00031 Score=89.76 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=129.7
Q ss_pred eEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCC-CCCcceEEEEEcChhhHHHH-hhhcCceecCceeEEE
Q 000621 912 LTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDS-DEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKVV 989 (1387)
Q Consensus 912 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v~ 989 (1387)
.++.|.|.+.+. ++.++..+|.. .|.|.+|+.. +... ....+-|.|.|.+++.|.+| ..+++..+.|..|+|.
T Consensus 1 ~sl~VgnLp~~v-te~~L~~~F~~--~G~v~~v~v~--~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 1 ASLYVGDLDPDV-TEAKLYDLFKP--FGPVLSVRVC--RDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred CeEEEeCCCCCC-CHHHHHHHHHh--cCCEEEEEEE--ecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 368888777665 46667666633 3677787766 1111 12234579999999999999 5788888899999986
Q ss_pred eecc-cc---CCCCC---------------------cCCCCeEEEEEEeeccCCccEEEEEcCCchhHHHHHhhh-hccc
Q 000621 990 PSRA-TL---GGDNK---------------------MYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFF-DLAI 1043 (1387)
Q Consensus 990 ~~~~-~~---~g~~~---------------------~~~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v~~~~-~~~i 1043 (1387)
.... +. .|... ...+..+++...- ...++|||+|.|.+.+.|...-+.. ...+
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 4321 00 11100 0123333333321 2237899999999999885554444 4577
Q ss_pred CCeeEEEecCcc----------ccCcEEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhh
Q 000621 1044 GGRYVRCEIGRR----------SMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREI 1113 (1387)
Q Consensus 1044 ~~~~v~~~~~~~----------~~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i 1113 (1387)
.|+.+.+..... ...++.+.|||..+|+++|.+++.....
T Consensus 155 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~------------------------------ 204 (562)
T TIGR01628 155 NDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE------------------------------ 204 (562)
T ss_pred cCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC------------------------------
Confidence 888887633211 1245889999999999998888754221
Q ss_pred cccCcCCCCCCceeEEEecCCCCcccceeEEEEe-cccchHHHHHHHHHhcCCccCC
Q 000621 1114 SRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF-DGRLHLEAAKALEQLEGKVLPG 1169 (1387)
Q Consensus 1114 ~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~ 1169 (1387)
...+.+..... ...+--|+|.| +..+ |.+|++.|+|+.+..
T Consensus 205 ----------i~~~~i~~~~~--g~~~G~afV~F~~~e~---A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 205 ----------ITSAAVMKDGS--GRSRGFAFVNFEKHED---AAKAVEEMNGKKIGL 246 (562)
T ss_pred ----------EEEEEEEECCC--CCcccEEEEEECCHHH---HHHHHHHhCCcEecc
Confidence 11112211111 12345689999 4445 999999999999883
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.02 E-value=0.00019 Score=95.65 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=85.5
Q ss_pred CeEEEEcCCCCcHHHH---HHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC-CCccccCCC
Q 000621 169 QILVLIGETGCGKSTQ---LVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS-FSSAQHFDS 244 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~---i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~-~~~~~~~~~ 244 (1387)
..-+|.=-||||||+. +...+++. .....|++++-|+.|-.|+.+.++.....+........... .........
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~ 351 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKG 351 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCC
Confidence 3567788999999986 33444444 45678999999999999999999887533221100000000 000011246
Q ss_pred cEEEEChhHHHHHhhcCC---CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 245 KVIYMTDHCLLQHFMNDR---DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~---~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
.|+|+|-+.|-....... .-.+==+||+|||| |+......-.+- ...++...+++|.|+
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~~~~~----~~~~~a~~~gFTGTP 413 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELAKLLK----KALKKAIFIGFTGTP 413 (962)
T ss_pred cEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHHHHHH----HHhccceEEEeeCCc
Confidence 899999998877765541 12222478999999 998875544332 234557899999996
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.96 E-value=3.8e-05 Score=89.50 Aligned_cols=135 Identities=21% Similarity=0.100 Sum_probs=73.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHH---ccc-cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC-----
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLAD---SGI-AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS----- 237 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~---~~~-~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~----- 237 (1387)
.....+++-++|+|||.++..++.. ... .....+||++|. .+..+....+.+....... .+..+.+..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~--~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL--RVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS---EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc--cccccccccccccc
Confidence 4567777889999999987666542 211 112258999999 5556788888777532111 333333332
Q ss_pred -ccccCCCcEEEEChhHHH-----HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCC
Q 000621 238 -SAQHFDSKVIYMTDHCLL-----QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD 309 (1387)
Q Consensus 238 -~~~~~~~~Ivv~Tpg~Ll-----~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~ 309 (1387)
.......+++++|.+.+. .....- .--++++||+||+|. .-+.+. ...+.+.... ....+++|||+-
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l-~~~~~~~vIvDEaH~-~k~~~s--~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDL-KQIKWDRVIVDEAHR-LKNKDS--KRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHH-HTSEEEEEEETTGGG-GTTTTS--HHHHHHHCCC-ECEEEEE-SS-S
T ss_pred cccccccceeeecccccccccccccccccc-ccccceeEEEecccc-cccccc--cccccccccc-cceEEeeccccc
Confidence 223356789999999998 111000 113589999999993 322211 1122222222 557789999963
No 165
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.94 E-value=0.00068 Score=81.25 Aligned_cols=130 Identities=21% Similarity=0.295 Sum_probs=81.3
Q ss_pred eeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCC-CCCcceEEEEEcChhhHHHH-hhhcCceecCceeEE
Q 000621 911 FLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDS-DEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKV 988 (1387)
Q Consensus 911 f~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v 988 (1387)
..++.|.|.+. .+++.++..++.. -|.|.+|.... ... ......|.|.|.+++.|.+| ..+++..++|..|+|
T Consensus 3 ~~~l~V~nLp~-~~~e~~l~~~F~~--~G~i~~v~i~~--d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 3 KTNLIVNYLPQ-TMTQEEIRSLFTS--IGEIESCKLVR--DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CcEEEEeCCCC-CCCHHHHHHHHHc--cCCEEEEEEEE--cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 45678887655 4556777777643 46777776651 111 12335679999999999999 689999999999998
Q ss_pred Eeec---ccc-------CCCCC----------cCCC-CeEEEEEEeec--cCCccEEEEEcCCchhHHHHHhhhh-cccC
Q 000621 989 VPSR---ATL-------GGDNK----------MYTF-PAVKAKVYWPR--RLSKGFAVVKCDATDVEFLVKDFFD-LAIG 1044 (1387)
Q Consensus 989 ~~~~---~~~-------~g~~~----------~~~~-~~~~v~~sW~r--~~~~~~~~l~f~~~~~a~~v~~~~~-~~i~ 1044 (1387)
..-. ..+ +|... ...+ ....+.+-+-+ ..++|+|+|.|.+.+.|...-...+ ..+.
T Consensus 78 ~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 78 SYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred EeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 5321 100 11100 0011 23445555543 3478999999999999966655444 4444
Q ss_pred C
Q 000621 1045 G 1045 (1387)
Q Consensus 1045 ~ 1045 (1387)
|
T Consensus 158 g 158 (352)
T TIGR01661 158 G 158 (352)
T ss_pred C
Confidence 4
No 166
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.92 E-value=0.00037 Score=81.52 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=74.5
Q ss_pred cEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-C--CceEEEEecchhhcCCCCCCceEEEecCCCc
Q 000621 369 TILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-P--GRRKVIFATNVAETSLTIPGVKFVIDSGMVK 445 (1387)
Q Consensus 369 ~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~--g~~kVLVaT~iae~GIdIp~V~~VId~g~~k 445 (1387)
+.|||-.-..-.+.+.-.|.+.|+.++.|-|+|++..|...++.| + ..+-.|++-.+.+..+++-....|...+.
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP-- 717 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP-- 717 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc--
Confidence 334443333333334444556899999999999999999999999 2 44566788888888899988888886543
Q ss_pred cccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccc
Q 000621 446 ESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSD 491 (1387)
Q Consensus 446 ~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~ 491 (1387)
.+||.-. -++.-|+-|.|.-.|-++.+|+-+..
T Consensus 718 --WWNpaVe-----------~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 718 --WWNPAVE-----------WQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred --cccHHHH-----------hhhhhhHHhhcCccceeEEEeehhcc
Confidence 5655221 23345666666667888888887653
No 167
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.78 E-value=0.0014 Score=83.90 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=128.2
Q ss_pred EEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEEEee
Q 000621 913 TVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKVVPS 991 (1387)
Q Consensus 913 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v~~~ 991 (1387)
.|.|.|.+.+ ++++++..+|.. .|.|.+|.... .........|.|.|++++.|.+| ..+++..+.|+.|.|.+.
T Consensus 90 ~vfV~nLp~~-~~~~~L~~~F~~--~G~i~~~~i~~--~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 90 NIFVKNLDKS-VDNKALFDTFSK--FGNILSCKVAT--DENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred ceEEcCCCcc-CCHHHHHHHHHh--cCCcceeEeee--cCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 5778876554 456667666643 35555554431 11112344579999999999999 689999999999988654
Q ss_pred cccc-CC--------------CC-------------CcCCCCeEEEEEEeeccCCccEEEEEcCCchhHHHHHhhh-hcc
Q 000621 992 RATL-GG--------------DN-------------KMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFF-DLA 1042 (1387)
Q Consensus 992 ~~~~-~g--------------~~-------------~~~~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v~~~~-~~~ 1042 (1387)
.... .. -. ....+...++. ......++|+|+|.|.+.+.|....... ...
T Consensus 165 ~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~-~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 165 IKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVM-KDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEE-ECCCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 3222 10 00 00012222221 2234457889999999999885555444 356
Q ss_pred cC----CeeEEEecCccc-----------------------cCcEEEcCCCcccCHHHHHhhhhccccccccceeeeecc
Q 000621 1043 IG----GRYVRCEIGRRS-----------------------MDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGD 1095 (1387)
Q Consensus 1043 i~----~~~v~~~~~~~~-----------------------~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~ 1095 (1387)
+. |+.+.+...+.. ..++.+.|||..+|+++|.+.+....
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G------------- 310 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECG------------- 310 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcC-------------
Confidence 66 776665332211 13467788888888877777764322
Q ss_pred cCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEe-cccchHHHHHHHHHhcCCccCCCCCCc
Q 000621 1096 AVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF-DGRLHLEAAKALEQLEGKVLPGCGPWQ 1174 (1387)
Q Consensus 1096 ~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~~~~~~ 1174 (1387)
....+++-.. .....+--|+|+| +..+ |.+|+++++|+.+-+.
T Consensus 311 ---------------------------~i~~~~i~~d--~~g~~~g~gfV~f~~~~~---A~~A~~~~~g~~~~gk---- 354 (562)
T TIGR01628 311 ---------------------------EITSAKVMLD--EKGVSRGFGFVCFSNPEE---ANRAVTEMHGRMLGGK---- 354 (562)
T ss_pred ---------------------------CeEEEEEEEC--CCCCcCCeEEEEeCCHHH---HHHHHHHhcCCeeCCc----
Confidence 1222333333 2123556789999 5545 9999999999887653
Q ss_pred eeEE
Q 000621 1175 KMKC 1178 (1387)
Q Consensus 1175 kl~~ 1178 (1387)
+|.|
T Consensus 355 ~l~V 358 (562)
T TIGR01628 355 PLYV 358 (562)
T ss_pred eeEE
Confidence 5555
No 168
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.77 E-value=0.001 Score=83.11 Aligned_cols=210 Identities=24% Similarity=0.305 Sum_probs=128.6
Q ss_pred CeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceec-CceeE
Q 000621 910 RFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYN-GSLLK 987 (1387)
Q Consensus 910 df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~-~~~l~ 987 (1387)
.=++|-|.|.+.+. ++.++..+|+. -|.|.++... .........-|.|+|.+++.|.+| ..+++.++. |..|.
T Consensus 57 ~~~~lFVgnLp~~~-tEd~L~~~F~~--~G~I~~vrl~--~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 57 RGCEVFVGKIPRDL-YEDELVPLFEK--AGPIYELRLM--MDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCEEEeCCCCCCC-CHHHHHHHHHh--hCCEEEEEEE--ECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 34789999877754 56666666643 3666676544 112222334469999999999998 678888775 55555
Q ss_pred EEeecc--cc--CCCC--C--------cCCC---CeEEEEEEeec--cCCccEEEEEcCCchhHHHHHhhhh---cccCC
Q 000621 988 VVPSRA--TL--GGDN--K--------MYTF---PAVKAKVYWPR--RLSKGFAVVKCDATDVEFLVKDFFD---LAIGG 1045 (1387)
Q Consensus 988 v~~~~~--~~--~g~~--~--------~~~~---~~~~v~~sW~r--~~~~~~~~l~f~~~~~a~~v~~~~~---~~i~~ 1045 (1387)
|..... .+ ++-. . +..+ ....+...+.+ ..++|||.|.|.+++.|....+... ..+.|
T Consensus 132 V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G 211 (578)
T TIGR01648 132 VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 211 (578)
T ss_pred ccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecC
Confidence 542210 00 1110 0 0001 01112222221 2367999999999999876665443 36788
Q ss_pred eeEEEecCccc----------cCcEEEcCCCcccCHHHHHhhhhccc-cccccceeeeecccCCCCChhHHHHHHHHhhc
Q 000621 1046 RYVRCEIGRRS----------MDAVVISGLDKELSEDEILGELRKVT-TRRIRDLFLVRGDAVECPQFDAFEEALLREIS 1114 (1387)
Q Consensus 1046 ~~v~~~~~~~~----------~~~i~l~~l~~~~~~~di~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~ 1114 (1387)
+.|.+.+.... ..+|.+.|||..+|+++|.+.+.... +. |.
T Consensus 212 r~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~----I~------------------------ 263 (578)
T TIGR01648 212 HVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK----VE------------------------ 263 (578)
T ss_pred ceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc----eE------------------------
Confidence 88887544321 23579999999999999999986531 11 10
Q ss_pred ccCcCCCCCCceeEEEecCCCCcccceeEEEEe-cccchHHHHHHHHHhcCCccCCCCCCceeEEe
Q 000621 1115 RFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF-DGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQ 1179 (1387)
Q Consensus 1115 ~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~~~~~~kl~~q 1179 (1387)
+|.+ . +| -|+|.| +..+ |.+|+++|||..|-+. +|.|.
T Consensus 264 -------------rV~~--~--rg---fAFVeF~s~e~---A~kAi~~lnG~~i~Gr----~I~V~ 302 (578)
T TIGR01648 264 -------------RVKK--I--RD---YAFVHFEDRED---AVKAMDELNGKELEGS----EIEVT 302 (578)
T ss_pred -------------EEEe--e--cC---eEEEEeCCHHH---HHHHHHHhCCCEECCE----EEEEE
Confidence 0111 0 12 499999 5556 9999999999988764 66654
No 169
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00093 Score=78.94 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEE--EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIV--CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Il--v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++||||+||||.+..+..... ..+.++. -+-|.|+.|.+.....++.. ++ +-
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~l-gi-------------------pv 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTI-GF-------------------EV 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhc-CC-------------------cE
Confidence 36788899999999997655543321 2233333 33466765554444433332 11 11
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchh-HHHHHHHHHHhcccCccEEeecccCCHHH
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTD-LLLALVKDLLCRRFDLRLVIMSATADAHQ 312 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d-~l~~~lk~l~~~~~~~kiIlmSATl~~~~ 312 (1387)
+...+|..+.+.+..-..-.++++|+||-+- |+.... .+..+.+.+....++..++.+|||...+.
T Consensus 300 ~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 300 IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred EecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 1223666666555332222368999999998 655443 34444444434455556777999875544
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.64 E-value=2.5e-05 Score=98.72 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=118.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCC---CccccCCCc
Q 000621 170 ILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSF---SSAQHFDSK 245 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~---~~~~~~~~~ 245 (1387)
.+++-+|||+|||..+-..+... ...++.+++++.|-..|.....+.+....... |..++-..+. +-..-..++
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~--g~k~ie~tgd~~pd~~~v~~~~ 1022 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP--GIKVIELTGDVTPDVKAVREAD 1022 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC--CceeEeccCccCCChhheecCc
Confidence 44556899999999865555432 23345799999999999998888887765221 2223221111 112234689
Q ss_pred EEEEChhHHHH---HhhcCCCCCceeEEEEcCccccccchhHHHHHH-HHH----HhcccCccEEeec-ccCCHHHHHHH
Q 000621 246 VIYMTDHCLLQ---HFMNDRDLSRISCIIVDEAHERSLNTDLLLALV-KDL----LCRRFDLRLVIMS-ATADAHQLSKY 316 (1387)
Q Consensus 246 Ivv~Tpg~Ll~---~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~l-k~l----~~~~~~~kiIlmS-ATl~~~~~~~~ 316 (1387)
|+++||+..-. .+++...+.+++.+|+||.|+-.-+-.-.+.+. ... ....+.++++++| |-.+...+++|
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~w 1102 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADW 1102 (1230)
T ss_pred eEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHH
Confidence 99999987644 444555888999999999995333311111111 110 1122446777655 55688889999
Q ss_pred hccCCeeee--ecccceeEEEEecCCCCCCc-cchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHH
Q 000621 317 FYDCGISHV--VGRNFPVDVRYVPCATAGTS-AVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEW 382 (1387)
Q Consensus 317 f~~~~v~~i--~gr~~pv~~~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~ 382 (1387)
++-.+.... ..+..|.+.++...+..... .......... ..+....+..++|||+.++.....
T Consensus 1103 l~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~---qaik~~sp~~p~lifv~srrqtrl 1168 (1230)
T KOG0952|consen 1103 LNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAF---QAIKTHSPIKPVLIFVSSRRQTRL 1168 (1230)
T ss_pred hCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHH---HHHhcCCCCCceEEEeeccccccc
Confidence 976555333 23334444444333220000 0001111122 222334677899999999875543
No 171
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.60 E-value=0.00016 Score=79.11 Aligned_cols=120 Identities=26% Similarity=0.326 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEec
Q 000621 156 MYRQDILRRIYGE-QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYP 234 (1387)
Q Consensus 156 ~q~~~i~~~l~~~-~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~ 234 (1387)
.|++++..++.++ ++.+|.|+.|+|||+.+-. +.+.....+.+|+++.||..++..+.+..... .
T Consensus 5 ~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~--------a----- 70 (196)
T PF13604_consen 5 EQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKTGIE--------A----- 70 (196)
T ss_dssp HHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHHTS---------E-----
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc--------h-----
Confidence 5777777776655 6888999999999996443 33322223578999999999888777663210 0
Q ss_pred CCCccccCCCcEEEEChhHHHHHhhc-----CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 235 SFSSAQHFDSKVIYMTDHCLLQHFMN-----DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 235 ~~~~~~~~~~~Ivv~Tpg~Ll~~l~~-----~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
.|-..++..... .+.+...++||||||- +++...+..+++.+.. .+.++|++-=+
T Consensus 71 --------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 71 --------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp --------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred --------------hhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 010111100000 0014566899999998 5666555555554432 35677776544
No 172
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.58 E-value=9.8e-05 Score=74.88 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=59.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcccc-----CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcccc
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIA-----AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQH 241 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~-----~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~ 241 (1387)
++..++|.|++|+|||+.+-.++.+.... ....+.+..|...-...++..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 56788899999999999877766543210 22334555565554566677776665322111
Q ss_pred CCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 242 FDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 242 ~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
-.|...+.+.+...-.-....+|||||+|. ... .-....++.+.. ..++++|+..-
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~-l~~-~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADH-LFS-DEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHH-HHT-HHHHHHHHHHTC-SCBEEEEEEES
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHh-cCC-HHHHHHHHHHHh-CCCCeEEEEEC
Confidence 122333333332211111227999999994 323 333344444444 55666665543
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.57 E-value=0.00015 Score=66.52 Aligned_cols=57 Identities=26% Similarity=0.432 Sum_probs=43.3
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc---ccCCCeEEEeccHHHHHHHHHHHH
Q 000621 161 ILRRIYGEQILVLIGETGCGKSTQLVQFLADSG---IAAEQSIVCTQPRKIAAISLAQRV 217 (1387)
Q Consensus 161 i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~---~~~~~~Ilv~~P~r~LA~qla~rv 217 (1387)
|..++.++.+++|.||+|||||+.+...+.... ...+.+|+++.|++.++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444666678888899999999976555554432 111668999999999999999888
No 174
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00052 Score=80.76 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=74.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeE--EEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSI--VCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~I--lv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
..+.+++++||||+||||.+..+..... ..+.+| +-+-|.|..|....+..++.++ . .+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lg-v----pv------------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLD-V----EL------------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCC-C----CE-------------
Confidence 4578889999999999997655543321 122333 3445777766544444433321 0 00
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH-hcccCccEEeecccCCHHHHHHHh
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL-CRRFDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~-~~~~~~kiIlmSATl~~~~~~~~f 317 (1387)
.+..+|.-+.+.+..-....++++|+||=+- |+...+-.+.-++.+. ...++.-++.+|||.....+.+.+
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1123566665544322234578999999998 6544333333333333 345566677889988766655543
No 175
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.53 E-value=0.0015 Score=74.28 Aligned_cols=133 Identities=17% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 143 RECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 143 ~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
...++.....|-..|.-.++....+ + ++...||-|||+.+.....-..+. +..|=|+.....||..=++.+...+.
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~~G-~--laEm~TGEGKTli~~l~a~~~AL~-G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALHKG-R--LAEMKTGEGKTLIAALPAALNALQ-GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHHTT-S--EEEESTTSHHHHHHHHHHHHHHTT-SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccHHHHhhhhhcccc-e--eEEecCCCCcHHHHHHHHHHHHHh-cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 3444555667777888777765333 3 557899999999754444333333 34455555666677666666666553
Q ss_pred CCCCCccEEEecCCCccc----cCCCcEEEEChhHHHHH-h----hcCC---CCCceeEEEEcCccccccc
Q 000621 223 GCYEDDSVICYPSFSSAQ----HFDSKVIYMTDHCLLQH-F----MNDR---DLSRISCIIVDEAHERSLN 281 (1387)
Q Consensus 223 ~~~~~~~vg~~~~~~~~~----~~~~~Ivv~Tpg~Ll~~-l----~~~~---~l~~l~~IIIDEaHer~~~ 281 (1387)
.. |.++++........ ...++|+|+|.+-+..- | .... ....+.++||||||...+|
T Consensus 144 ~L--Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 144 FL--GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp HT--T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred Hh--hhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 22 34566644433221 23578999999876532 2 2222 3578899999999954444
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.52 E-value=0.001 Score=86.44 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCH
Q 000621 243 DSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADA 310 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~ 310 (1387)
...|+++||.+|..-+.... .+.+++.||||||| |...+....-+++......+..-|.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46899999999987666555 89999999999999 777665555556666666677779999999753
No 177
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0017 Score=77.22 Aligned_cols=325 Identities=16% Similarity=0.163 Sum_probs=187.8
Q ss_pred hccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH------H---HHHHHHHc--------------------------
Q 000621 148 LEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKST------Q---LVQFLADS-------------------------- 192 (1387)
Q Consensus 148 ~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt------~---i~~~ll~~-------------------------- 192 (1387)
.+...|+...|.++..++.+.+.++ .||+|-|.- - ++..++..
T Consensus 211 ~K~s~pltalQ~~L~~~m~~YrDl~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frD 288 (698)
T KOG2340|consen 211 QKKSEPLTALQKELFKIMFNYRDLL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRD 288 (698)
T ss_pred ccccCcchHHHHHHHHHHHhhhhhc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhh
Confidence 4678999999999999999988777 477775542 1 22222211
Q ss_pred -cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc-EEEecCCCccc------------------------------
Q 000621 193 -GIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS-VICYPSFSSAQ------------------------------ 240 (1387)
Q Consensus 193 -~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~-vg~~~~~~~~~------------------------------ 240 (1387)
++ ...+|++++|+|+.|-.+.+.+...+.|...+.. |.-..++...-
T Consensus 289 QG~-tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~Fr 367 (698)
T KOG2340|consen 289 QGF-TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFR 367 (698)
T ss_pred cCC-CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhh
Confidence 11 1347999999999999999999888644332211 11111111000
Q ss_pred ---------------cCCCcEEEEChhHHHHHhhc--C-----CCCCceeEEEEcCcccccc--chhHHHHHHHHHHhcc
Q 000621 241 ---------------HFDSKVIYMTDHCLLQHFMN--D-----RDLSRISCIIVDEAHERSL--NTDLLLALVKDLLCRR 296 (1387)
Q Consensus 241 ---------------~~~~~Ivv~Tpg~Ll~~l~~--~-----~~l~~l~~IIIDEaHer~~--~~d~l~~~lk~l~~~~ 296 (1387)
-...+|+||+|=-|--.+-+ + ..|+.+.++|||-|| -++ +..-++.++..+...+
T Consensus 368 iGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~-~~l~QNwEhl~~ifdHLn~~P 446 (698)
T KOG2340|consen 368 IGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQAD-IMLMQNWEHLLHIFDHLNLQP 446 (698)
T ss_pred hhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHH-HHHHhhHHHHHHHHHHhhcCc
Confidence 01468999999654333321 1 178899999999999 222 2223333333333222
Q ss_pred cC---------------------ccEEeecccCCHHH---HHHHhccC-Cee---eee------cccceeEEEEecCCCC
Q 000621 297 FD---------------------LRLVIMSATADAHQ---LSKYFYDC-GIS---HVV------GRNFPVDVRYVPCATA 342 (1387)
Q Consensus 297 ~~---------------------~kiIlmSATl~~~~---~~~~f~~~-~v~---~i~------gr~~pv~~~~~~~~~~ 342 (1387)
.+ .|++++|+-..+.. |..|..+. +.+ .+. .-..|+...|......
T Consensus 447 ~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~ 526 (698)
T KOG2340|consen 447 SKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVK 526 (698)
T ss_pred ccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheecc
Confidence 11 46777777654331 23332221 000 000 0112222211111000
Q ss_pred CCccchhh-HHHHHHH-HHHhhhccCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-CCceEE
Q 000621 343 GTSAVASY-VSDVVRM-VGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKV 419 (1387)
Q Consensus 343 ~~~~~~~~-~~~~~~~-l~~i~~~~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~g~~kV 419 (1387)
......++ ..-.+.. +-++. ......+|||.|+.-+--++-..+++..+....+|---+...-.++-+-| .|...|
T Consensus 527 si~~~~D~RFkyFv~~ImPq~~-k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~v 605 (698)
T KOG2340|consen 527 SIIETPDARFKYFVDKIMPQLI-KRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSV 605 (698)
T ss_pred CcccCchHHHHHHHHhhchhhc-ccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceE
Confidence 00000000 0001111 11111 12346799999999999999999988777666666555555545555567 888999
Q ss_pred EEecchh--hcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC-----CCeEEEeeccccc
Q 000621 420 IFATNVA--ETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-----PGRCYRLYSKSDF 492 (1387)
Q Consensus 420 LVaT~ia--e~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~-----~G~~~~L~s~~~~ 492 (1387)
++-|--+ =+--+|.+|+-||-+++|..+.| -++.+.+.||+.-.| .-.|-.||++-|.
T Consensus 606 lLyTER~hffrR~~ikGVk~vVfYqpP~~P~F---------------YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 606 LLYTERAHFFRRYHIKGVKNVVFYQPPNNPHF---------------YSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred EEEehhhhhhhhheecceeeEEEecCCCCcHH---------------HHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 9999654 45678999999999999986644 278888998885443 3478899998654
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.49 E-value=0.0005 Score=75.19 Aligned_cols=127 Identities=21% Similarity=0.299 Sum_probs=75.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVI 247 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Iv 247 (1387)
++++++||||+||||.+..+....... ..-.++++-..|+.|....+.+++.++ +..+......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-------vp~~~~~~~~-------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-------VPFYVARTES-------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-------EEEEESSTTS--------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-------cccchhhcch--------
Confidence 467889999999999876665544333 222456678889999988888888872 2211110000
Q ss_pred EEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH-hcccCccEEeecccCCHHHH
Q 000621 248 YMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL-CRRFDLRLVIMSATADAHQL 313 (1387)
Q Consensus 248 v~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~-~~~~~~kiIlmSATl~~~~~ 313 (1387)
.|..+++........+++++|+||-+. |+....-...-++.+. ...+.-.++.||||...+.+
T Consensus 67 --~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 --DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp --CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred --hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 133333222222223468999999999 6665444444444433 34566678899999866554
No 179
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.44 E-value=0.012 Score=73.53 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=48.8
Q ss_pred cCCeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceec
Q 000621 908 ERRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYN 982 (1387)
Q Consensus 908 ~~df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~ 982 (1387)
++.+..|.|.|.+.+ +++.++..++. --|.|.+|..+. . .....|.|.|.|++.|.+| ..+++.++-
T Consensus 93 ~~~~~~v~v~nl~~~-vt~~~L~~~F~--~~G~V~~v~i~~--~---~~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 93 PNKVLRVIVENPMYP-ITLDVLYQIFN--PYGKVLRIVTFT--K---NNVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred CCceEEEEEcCCCCC-CCHHHHHHHHh--ccCCEEEEEEEe--c---CCceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 456677888876654 67777877774 348888887771 1 1223599999999999999 689998764
No 180
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0074 Score=73.81 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=71.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcc-ccCCCeEE--EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSG-IAAEQSIV--CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~~Il--v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
.+.++++.||||+||||.+..++.... ...+.+|. -+-|.|..|......+++.++ .. +
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp----~------------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-IP----V------------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-Cc----e-------------
Confidence 456888899999999998666554432 22233333 345667766555555554431 10 0
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-c-ccCccEEeecccCCHHHHHHH
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-R-RFDLRLVIMSATADAHQLSKY 316 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~-~~~~kiIlmSATl~~~~~~~~ 316 (1387)
....++.-+...+. .+.++++||||.+- |+....-....+..+.. . .+....+++|||.....+.+.
T Consensus 282 --~~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 282 --EVVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred --EccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 11123444444443 24468999999998 44333223333333333 2 233457889999877665543
No 181
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0058 Score=73.32 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeE--EEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSI--VCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~I--lv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++||||+||||++..++.......+.+| +-.-+.|..|.....+.++.++ .. +
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp----~--------------- 282 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG-MP----F--------------- 282 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC-CC----e---------------
Confidence 467888999999999998777654322223343 3356778888776666665431 10 0
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-c---ccCccEEeecccCCHHHHH
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-R---RFDLRLVIMSATADAHQLS 314 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~---~~~~kiIlmSATl~~~~~~ 314 (1387)
+.+..+..+...+. -.++++|+||=+- |+....-...-+..+.. . .+.-.++++|||...+.+.
T Consensus 283 ~~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 283 YPVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred eehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 00011233344332 2568999999887 55433333333333332 2 1334678899998664433
No 182
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.40 E-value=0.00055 Score=86.61 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=83.3
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--C--CceEEEEecchhhcCCCCCCceEEEe
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--P--GRRKVIFATNVAETSLTIPGVKFVID 440 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~--g~~kVLVaT~iae~GIdIp~V~~VId 440 (1387)
..++.+|.|+.-..-..-+..+|.-.++....+.|....++|-..++.| + .-...|++|-+.+.|+|..-.+.||-
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 3567899998876666666777777788889999999999999998888 3 34688999999999999999998886
Q ss_pred cCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEEeeccccc
Q 000621 441 SGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSDF 492 (1387)
Q Consensus 441 ~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~L~s~~~~ 492 (1387)
++- -++| ....|+.-||-|.| .-.++++.+-..+
T Consensus 804 fds----dwnp--------------~~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 804 FDS----DWNP--------------HQDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred ecC----CCCc--------------hhHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 543 2233 44567777777765 5567777765443
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.36 E-value=0.00052 Score=82.25 Aligned_cols=94 Identities=16% Similarity=0.275 Sum_probs=61.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVI 247 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Iv 247 (1387)
.+++|.|..|||||+.+..++.+. ....+..++++.+...+...+.+.+...... ......
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------~~~~~~ 63 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------KLKKSD 63 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc------------------chhhhh
Confidence 578999999999999877666554 1234557778888888888777777654300 111223
Q ss_pred EEChhHHHHHhh-cCCCCCceeEEEEcCccccccc
Q 000621 248 YMTDHCLLQHFM-NDRDLSRISCIIVDEAHERSLN 281 (1387)
Q Consensus 248 v~Tpg~Ll~~l~-~~~~l~~l~~IIIDEaHer~~~ 281 (1387)
+..+..+...+. .......+++||||||| |...
T Consensus 64 ~~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 64 FRKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 334444443332 33467789999999999 6665
No 184
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0092 Score=71.21 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=74.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC-CeEE-E-eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcccc
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAE-QSIV-C-TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQH 241 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-~~Il-v-~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~ 241 (1387)
+..+.+++++||||+||||.+..+........+ .+|. + +-+.|+.+.+....+.+.++ . .+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v----~~----------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-V----PV----------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-C----ce-----------
Confidence 346789999999999999987665543321212 2333 3 33446666666666666542 1 11
Q ss_pred CCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhc-ccCccEEeecccCCHHHHH
Q 000621 242 FDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCR-RFDLRLVIMSATADAHQLS 314 (1387)
Q Consensus 242 ~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~-~~~~kiIlmSATl~~~~~~ 314 (1387)
..+.+++-+...+. .+.+.++|+||++- +....+.+...+..+... .+.-.++++|||...+.+.
T Consensus 198 ----~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 198 ----HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 11223333333332 35577999999998 665555666666655432 2345688999998665543
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.31 E-value=0.00037 Score=84.44 Aligned_cols=62 Identities=18% Similarity=0.426 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVR 218 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~ 218 (1387)
.|+.++..++...+..+|.||+|+|||..+...+... ...+.+|+|..|+.++...+.+|+.
T Consensus 189 SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 189 SQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3555555556666999999999999998766655443 3446899999999999888888644
No 186
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0019 Score=77.48 Aligned_cols=127 Identities=22% Similarity=0.249 Sum_probs=74.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccc---cCCCe--EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccC
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGI---AAEQS--IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHF 242 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~---~~~~~--Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~ 242 (1387)
..++++.||||+||||.+..+...... ..+.+ ++-+-+.|..|......+++.++ .. +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vp----v------------ 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IP----V------------ 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cc----e------------
Confidence 468888999999999986655433211 12233 34456778877766666655431 11 1
Q ss_pred CCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccC-ccEEeecccCCHHHHHHHhc
Q 000621 243 DSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFD-LRLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~-~kiIlmSATl~~~~~~~~f~ 318 (1387)
....++..+...+. .+.++++|+||++. |+......+.-++.+.. ..++ -.++.+|||.....+.+.|.
T Consensus 237 ---~~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 ---KAIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ---EeeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 01113444444332 24678999999999 77643323333333333 3334 46789999998777665554
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.21 E-value=0.0015 Score=82.92 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH---HccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLA---DSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll---~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
+..|+.++..++. +.+.+|+|++|+||||.+..++. +........|+++.||.-+|..+.+.+............+
T Consensus 154 ~d~Qk~Av~~a~~-~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~ 232 (615)
T PRK10875 154 VDWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 232 (615)
T ss_pred CHHHHHHHHHHhc-CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhh
Confidence 3568887777764 67888899999999997554442 2111223578899999999998888776543211110000
Q ss_pred EEecCCCccccCCCcEEEEChhHHHHHhhc-------CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 231 ICYPSFSSAQHFDSKVIYMTDHCLLQHFMN-------DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 231 g~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~-------~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
. .....-..|-.+|+..... ....-.+++|||||+- |++......+++. .+++.|+|+
T Consensus 233 --------~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIl 297 (615)
T PRK10875 233 --------K--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIF 297 (615)
T ss_pred --------h--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEE
Confidence 0 0000112232233221110 1123356899999998 6776665555553 456677777
Q ss_pred e
Q 000621 304 M 304 (1387)
Q Consensus 304 m 304 (1387)
+
T Consensus 298 v 298 (615)
T PRK10875 298 L 298 (615)
T ss_pred e
Confidence 6
No 188
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.16 E-value=0.005 Score=72.87 Aligned_cols=128 Identities=21% Similarity=0.306 Sum_probs=88.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcc-ccCCC--eEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSG-IAAEQ--SIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~--~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
.+.++.+.||||.||||.+..+..... ..... .+|=+-..|+-|....+..++.++ +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-v------------------- 261 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-V------------------- 261 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-C-------------------
Confidence 378999999999999998666554433 12222 345567889999888888888872 1
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCc-cEEeecccCCHHHHHHHhc
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDL-RLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~-kiIlmSATl~~~~~~~~f~ 318 (1387)
+-.++-+|.-|...+ ..+.++++|.||=+- |+........-++.+.....+. -.+.+|||...+.+.+.+.
T Consensus 262 p~~vv~~~~el~~ai---~~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 262 PLEVVYSPKELAEAI---EALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ceEEecCHHHHHHHH---HHhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 123344555554443 247788999999999 8887777777777766654444 4568999988777665554
No 189
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.017 Score=67.42 Aligned_cols=206 Identities=24% Similarity=0.296 Sum_probs=132.6
Q ss_pred CCeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceec-Ccee
Q 000621 909 RRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYN-GSLL 986 (1387)
Q Consensus 909 ~df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~-~~~l 986 (1387)
..=|.|-|.+-+.. ..+.++.-++ .-.|.|-+++.+ |-+.+.++..-|.|+|-+++.|++| -.||.-+++ |..|
T Consensus 81 ~~G~EVfvGkIPrD-~~EdeLvplf--EkiG~I~elRLM-mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRD-VFEDELVPLF--EKIGKIYELRLM-MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCcc-ccchhhHHHH--HhccceeeEEEe-ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 55678888865544 4455666666 345878888877 2224445666679999999999998 678888776 8899
Q ss_pred EEEeecccc----CCCCCc----------CCCCeEEEEEEee-----ccCCccEEEEEcCCchhHHHHHhhhhc---ccC
Q 000621 987 KVVPSRATL----GGDNKM----------YTFPAVKAKVYWP-----RRLSKGFAVVKCDATDVEFLVKDFFDL---AIG 1044 (1387)
Q Consensus 987 ~v~~~~~~~----~g~~~~----------~~~~~~~v~~sW~-----r~~~~~~~~l~f~~~~~a~~v~~~~~~---~i~ 1044 (1387)
+|.-+.+.- |+.-++ -.+----+.|.-| +-..+|||.|-|-++-.|...++.... ++-
T Consensus 157 gvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 157 GVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred EEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 987664432 222000 0010111223222 234689999999999999999988764 777
Q ss_pred CeeEEEecCcc--cc--C---c---EEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhc
Q 000621 1045 GRYVRCEIGRR--SM--D---A---VVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREIS 1114 (1387)
Q Consensus 1045 ~~~v~~~~~~~--~~--~---~---i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~ 1114 (1387)
|-.++..|.-. .. + . +-++||+..+||+-|-..+ ++++
T Consensus 237 gn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F--------------------------------~~~G 284 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLF--------------------------------NEFG 284 (506)
T ss_pred CCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHH--------------------------------Hhcc
Confidence 77777654422 11 1 1 2677777777775444443 3322
Q ss_pred ccCcCCCCCCceeEEEecCCCCcccceeEEEEeccc-chHHHHHHHHHhcCCccCCC
Q 000621 1115 RFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGR-LHLEAAKALEQLEGKVLPGC 1170 (1387)
Q Consensus 1115 ~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~Fd~~-~~~~a~~al~~l~g~~lp~~ 1170 (1387)
. .++ |-.+ +| =|||||.++ + |.+|++++||+.|-+.
T Consensus 285 ~--------veR----Vkk~--rD---YaFVHf~eR~d---avkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 285 K--------VER----VKKP--RD---YAFVHFAERED---AVKAMKETNGKELDGS 321 (506)
T ss_pred c--------eEE----eecc--cc---eeEEeecchHH---HHHHHHHhcCceecCc
Confidence 2 221 2222 35 799999777 6 9999999999999885
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.14 E-value=0.0024 Score=80.89 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHH---HHcccc-CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 155 YMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFL---ADSGIA-AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 155 ~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~l---l~~~~~-~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
..|+.++..++. +++.+|+|+.|+||||.+...+ ...... ...+|+++.||.-+|..+.+.+...........
T Consensus 148 ~~Qk~A~~~al~-~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~-- 224 (586)
T TIGR01447 148 NWQKVAVALALK-SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAE-- 224 (586)
T ss_pred HHHHHHHHHHhh-CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccch--
Confidence 456666655554 6888999999999999754443 222111 124799999999999888877765432111000
Q ss_pred EEecCCCccccCCCcEEEEChhHHHHHhhc-------CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 231 ICYPSFSSAQHFDSKVIYMTDHCLLQHFMN-------DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 231 g~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~-------~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
.......+-..|-.+|+..... ......+++||||||= |++...+..+++. .+++.|+|+
T Consensus 225 --------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIl 291 (586)
T TIGR01447 225 --------ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLIL 291 (586)
T ss_pred --------hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEE
Confidence 0000011113333333322110 1123368999999997 6776655555543 355667766
Q ss_pred e
Q 000621 304 M 304 (1387)
Q Consensus 304 m 304 (1387)
+
T Consensus 292 v 292 (586)
T TIGR01447 292 L 292 (586)
T ss_pred E
Confidence 5
No 191
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.13 E-value=0.074 Score=65.81 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=70.7
Q ss_pred HHhcCCCCceEeccCCCCHhhhhhhhccC---CC-ceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCccccee
Q 000621 385 EKFDAPSAVALPFHGQLSFDEQFCVFKSY---PG-RRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRV 460 (1387)
Q Consensus 385 ~~L~~~~~~v~~lh~~l~~~er~~v~~~f---~g-~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~ 460 (1387)
..|.+.|.....+||.+...+|..+.+.| +| .+-.|++-.+.+-|+|+-+-+++|--|+ .+||.-
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWNPaL------- 832 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWNPAL------- 832 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccCHHH-------
Confidence 45566788889999999999999999999 34 6667788888899999999999997776 555521
Q ss_pred cccCHhhHHHHhcccCCCCCCeEEEeeccccc
Q 000621 461 CRVSQSSANQRAGRAGRTEPGRCYRLYSKSDF 492 (1387)
Q Consensus 461 ~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 492 (1387)
-.++--|+=|.|-..+=..|++..+...
T Consensus 833 ----EqQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 833 ----EQQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred ----HHHHHHHHHHhcccCceEEEEEEecCcH
Confidence 2445566777776667777777776543
No 192
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.08 E-value=0.022 Score=71.95 Aligned_cols=239 Identities=16% Similarity=0.170 Sum_probs=128.4
Q ss_pred CCeeEEEeecCCCCCcCHHHHHHhhhccc----------CCccceEEEeccccCCCCCcceEEEEEcChhhHHHHhhhcC
Q 000621 909 RRFLTVDVYHSNANILDDKELLMFLEKNA----------SGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNG 978 (1387)
Q Consensus 909 ~df~~v~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~~~~~ 978 (1387)
..-.+|.|.|.+.+ +++.++..||...+ .+.|.+++.- .....|.|.|.+++.|..|..+++
T Consensus 173 ~~~r~lyVgnLp~~-~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-------~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPE-FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-------KEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred ccccEEEEeCCCCC-CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-------CCCCEEEEEeCCHHHHhhhhcCCC
Confidence 45578999987765 45667777775321 1123333322 233468999999999999988999
Q ss_pred ceecCceeEEEeec----cc--c-------CCCC----------CcCCCCeEEEEEE-----------------------
Q 000621 979 VEYNGSLLKVVPSR----AT--L-------GGDN----------KMYTFPAVKAKVY----------------------- 1012 (1387)
Q Consensus 979 ~~~~~~~l~v~~~~----~~--~-------~g~~----------~~~~~~~~~v~~s----------------------- 1012 (1387)
..|.|..|+|.... .+ . +..+ ....-...+|.|.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 99999999985211 00 0 0000 0000001111111
Q ss_pred --ee----ccCCccEEEEEcCCchhHHHHHhh-hhcccCCeeEEEecCccccC---------cEEEcCCCcccCHHHHHh
Q 000621 1013 --WP----RRLSKGFAVVKCDATDVEFLVKDF-FDLAIGGRYVRCEIGRRSMD---------AVVISGLDKELSEDEILG 1076 (1387)
Q Consensus 1013 --W~----r~~~~~~~~l~f~~~~~a~~v~~~-~~~~i~~~~v~~~~~~~~~~---------~i~l~~l~~~~~~~di~~ 1076 (1387)
-. ...++|||+|.|.+.+.|...... ....++|+.+.++....... ...+...+.... ..+++
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 403 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALS-QSILQ 403 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccch-hhhcc
Confidence 11 234789999999999998665554 44689999888755432211 011111222111 11111
Q ss_pred hhhccccccccceeeeecc-----cCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCc--ccceeEEEEe-c
Q 000621 1077 ELRKVTTRRIRDLFLVRGD-----AVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPK--DAFMKAFITF-D 1148 (1387)
Q Consensus 1077 ~~~~~~~~~~~~~~~~r~~-----~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~--d~~~kA~~~F-d 1148 (1387)
+- ..+-.+..+.-. -...+.|..+.|.+..... ++|....+.+.-..+... -..-.|+|.| +
T Consensus 404 ~~-----~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-----~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~ 473 (509)
T TIGR01642 404 IG-----GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-----KYGPLINIVIPRPNGDRNSTPGVGKVFLEYAD 473 (509)
T ss_pred cc-----CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-----hcCCeeEEEeeccCcCCCcCCCcceEEEEECC
Confidence 11 012223222211 1233345555554444432 345555544432111111 2356899999 6
Q ss_pred ccchHHHHHHHHHhcCCccCC
Q 000621 1149 GRLHLEAAKALEQLEGKVLPG 1169 (1387)
Q Consensus 1149 ~~~~~~a~~al~~l~g~~lp~ 1169 (1387)
... |.+|++.|||..+-+
T Consensus 474 ~e~---A~~A~~~lnGr~~~g 491 (509)
T TIGR01642 474 VRS---AEKAMEGMNGRKFND 491 (509)
T ss_pred HHH---HHHHHHHcCCCEECC
Confidence 656 999999999999754
No 193
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.03 E-value=0.0067 Score=61.75 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccH
Q 000621 159 QDILRRIYG--EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPR 206 (1387)
Q Consensus 159 ~~i~~~l~~--~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~ 206 (1387)
..+...+.. ...++|.||+|+|||+.+-..+... ...+..++++...
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~~ 56 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-FRPGAPFLYLNAS 56 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-hcCCCCeEEEehh
Confidence 344445544 6788899999999998654443322 2223455555443
No 194
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.0025 Score=69.74 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc-cCCCeEEEeccHHH
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQPRKI 208 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~-~~~~~Ilv~~P~r~ 208 (1387)
.|....|...++++..++++++.||.|||||+.+....++... ..-.+++++-|.-.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 3566678888888889999999999999999876665554422 23358898888743
No 195
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.96 E-value=0.057 Score=67.25 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=90.1
Q ss_pred CeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHHhhhcCceecCceeEEE
Q 000621 910 RFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVV 989 (1387)
Q Consensus 910 df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~~~~~~~~~~~~l~v~ 989 (1387)
+-.+|.|.|.+.+ +++.++..+|.. .|.|.+|..+.... ......-|.|.|.+++.|.+|..+++..+.|..|.|.
T Consensus 88 ~~~~l~V~nlp~~-~~~~~l~~~F~~--~G~v~~v~i~~d~~-~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALK-ARERDLYEFFSK--VGKVRDVQCIKDRN-SRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred CCcEEEEeCCCCC-CCHHHHHHHHHh--cCCeeEEEEeecCC-CCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 4567889987765 467777787744 46777877762111 1123345799999999999998899999999999886
Q ss_pred eecccc----------CCC------------CCcC---------CCCeEEEEEEeec----cCCccEEEEEcCCchhHHH
Q 000621 990 PSRATL----------GGD------------NKMY---------TFPAVKAKVYWPR----RLSKGFAVVKCDATDVEFL 1034 (1387)
Q Consensus 990 ~~~~~~----------~g~------------~~~~---------~~~~~~v~~sW~r----~~~~~~~~l~f~~~~~a~~ 1034 (1387)
+....- +|. .... .--.....|.+++ ..++|+|+|.|.+.+.|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 543210 110 0000 0000122333332 2467999999999999865
Q ss_pred HH-hhhhcccCCeeEEEecC
Q 000621 1035 VK-DFFDLAIGGRYVRCEIG 1053 (1387)
Q Consensus 1035 v~-~~~~~~i~~~~v~~~~~ 1053 (1387)
.. ......++|+.+.+...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred HHHhcCCcEECCEEEEEEEc
Confidence 54 44457889999988663
No 196
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.91 E-value=0.0058 Score=79.71 Aligned_cols=120 Identities=23% Similarity=0.176 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC--CeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE--QSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~--~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
...|++++-.+ ..+.+++|+|+.|+||||.+-.++... ...+ ..|+++.||.-+|..+.+ ..+ ..
T Consensus 325 ~~~Q~~Ai~~~-~~~~~~iitGgpGTGKTt~l~~i~~~~-~~~~~~~~v~l~ApTg~AA~~L~e----~~g-~~------ 391 (720)
T TIGR01448 325 SEEQKQALDTA-IQHKVVILTGGPGTGKTTITRAIIELA-EELGGLLPVGLAAPTGRAAKRLGE----VTG-LT------ 391 (720)
T ss_pred CHHHHHHHHHH-HhCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCceEEEEeCchHHHHHHHH----hcC-Cc------
Confidence 44555555544 567799999999999999754333211 1112 578889999888765543 211 00
Q ss_pred EecCCCccccCCCcEEEEChhHHHHHhh------cCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 232 CYPSFSSAQHFDSKVIYMTDHCLLQHFM------NDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 232 ~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~------~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
-.|-.+++.... ........++||||||+ +++......+++. .+++.++|++-
T Consensus 392 ----------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rlilvG 450 (720)
T TIGR01448 392 ----------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLLLVG 450 (720)
T ss_pred ----------------cccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEEEEC
Confidence 001111111100 00112457899999999 6776665555543 45677888775
Q ss_pred cc
Q 000621 306 AT 307 (1387)
Q Consensus 306 AT 307 (1387)
-+
T Consensus 451 D~ 452 (720)
T TIGR01448 451 DT 452 (720)
T ss_pred cc
Confidence 44
No 197
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.90 E-value=0.0023 Score=83.38 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=75.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHHHHHHHHHHHH-----HHhcCCCCCccEEE---ecCC-
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKIAAISLAQRVR-----EESRGCYEDDSVIC---YPSF- 236 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~LA~qla~rv~-----~~~~~~~~~~~vg~---~~~~- 236 (1387)
.+.++.+.++||+|||..++..+++.... .-.++|+++|+.+.-..+.+-+. +.+.....+..+-+ ....
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~ 137 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDK 137 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcc
Confidence 34567778999999999766665543221 23578999999887666654443 12221111222222 1111
Q ss_pred --------Ccc----------ccCCCcEEEEChhHHHHHhh--c-----------CC--CCCce-eEEEEcCccccccch
Q 000621 237 --------SSA----------QHFDSKVIYMTDHCLLQHFM--N-----------DR--DLSRI-SCIIVDEAHERSLNT 282 (1387)
Q Consensus 237 --------~~~----------~~~~~~Ivv~Tpg~Ll~~l~--~-----------~~--~l~~l-~~IIIDEaHer~~~~ 282 (1387)
... ......|+++|.++|..... . .| .+... -+|||||.| +.-..
T Consensus 138 ~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh-~~~~~ 216 (986)
T PRK15483 138 KKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH-RFPRD 216 (986)
T ss_pred cccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC-CCCcc
Confidence 000 01146899999999865322 0 01 11111 379999999 43221
Q ss_pred hHHHHHHHHHHhcccCccEEeecccCCH
Q 000621 283 DLLLALVKDLLCRRFDLRLVIMSATADA 310 (1387)
Q Consensus 283 d~l~~~lk~l~~~~~~~kiIlmSATl~~ 310 (1387)
.- -...+....|.. ++.+|||.+.
T Consensus 217 ~k---~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NK---FYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred hH---HHHHHHhcCccc-EEEEeeecCC
Confidence 11 123334444433 6679999864
No 198
>PRK14974 cell division protein FtsY; Provisional
Probab=96.89 E-value=0.021 Score=67.55 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe--ccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT--QPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~--~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++|++|+||||.+..+.... ...+.+++++ -+.|..|.......+..++ .. + .... ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-v~----v--~~~~-----~g-- 204 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLG-VK----V--IKHK-----YG-- 204 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcC-Cc----e--eccc-----CC--
Confidence 3688899999999999754443221 1123355443 2445655544444444431 11 1 0000 00
Q ss_pred EEEEChhH-HHHHhhcCCCCCceeEEEEcCcccccc-chhHHHHHHHHHHhcccCccEEeecccCCHH
Q 000621 246 VIYMTDHC-LLQHFMNDRDLSRISCIIVDEAHERSL-NTDLLLALVKDLLCRRFDLRLVIMSATADAH 311 (1387)
Q Consensus 246 Ivv~Tpg~-Ll~~l~~~~~l~~l~~IIIDEaHer~~-~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~ 311 (1387)
..|.. +.+.+.. ....++++|+||.++ |+. +.+++..+.+......|+..+++++||...+
T Consensus 205 ---~dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 205 ---ADPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ---CCHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 01111 2222111 123467899999999 665 4455544444444456788889999997533
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.029 Score=69.17 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHccccC-CCeEEE--eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc
Q 000621 164 RIYGEQILVLIGETGCGKSTQLVQFLADSGIAA-EQSIVC--TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ 240 (1387)
Q Consensus 164 ~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~-~~~Ilv--~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~ 240 (1387)
.+..+++++++||||+||||.+..+........ +.+|.+ +-+.|..+..........+ + +.+.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL-----g--v~v~------- 411 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL-----G--IAVH------- 411 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc-----C--ceeE-------
Confidence 345688999999999999997655443321111 223433 3455665543333322221 0 1000
Q ss_pred cCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHH
Q 000621 241 HFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLS 314 (1387)
Q Consensus 241 ~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~ 314 (1387)
...+++.+...+. .+.++++||||.+- ++.....+...+..+........+++++++.....+.
T Consensus 412 ------~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 ------EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ------ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 0113344444442 24578999999998 5443333333333343333445788889987655444
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.88 E-value=0.006 Score=79.85 Aligned_cols=122 Identities=22% Similarity=0.192 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
...|+.++-.++.++++++|+|++|+||||.+-..+ +.....+..|+++.||--+|..+.+ .. +..
T Consensus 354 s~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~~~g~~V~~~ApTg~Aa~~L~~----~~-g~~-------- 419 (744)
T TIGR02768 354 SEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWEAAGYRVIGAALSGKAAEGLQA----ES-GIE-------- 419 (744)
T ss_pred CHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHHhCCCeEEEEeCcHHHHHHHHh----cc-CCc--------
Confidence 456777776666667899999999999998644322 2212235689999999877765542 11 110
Q ss_pred cCCCccccCCCcEEEEChhHHHHHhhc-CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 234 PSFSSAQHFDSKVIYMTDHCLLQHFMN-DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 234 ~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~-~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
-.|-..++..+.. ...+...++||||||- +++...+..+++... ..+.++|++-=+
T Consensus 420 --------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVGD~ 476 (744)
T TIGR02768 420 --------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVGDP 476 (744)
T ss_pred --------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCh
Confidence 0122222211222 2246678999999998 667666666555433 245677777633
No 201
>PRK04296 thymidine kinase; Provisional
Probab=96.75 E-value=0.0019 Score=70.40 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEecc
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQP 205 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P 205 (1387)
.+.+++||+|+||||.+..++.... ..+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~-~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE-ERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HcCCeEEEEec
Confidence 4678899999999999888876553 23567777655
No 202
>PRK10536 hypothetical protein; Provisional
Probab=96.75 E-value=0.0017 Score=72.82 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=43.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCeEEEeccHHH
Q 000621 150 DGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-AEQSIVCTQPRKI 208 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~Ilv~~P~r~ 208 (1387)
...|....|..++.++..++++++.||+|||||+.+..+.++.... .-.+++++-|.-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 3567777888888899999999999999999999866666543212 2346777777643
No 203
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.74 E-value=0.0025 Score=71.08 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc-------cccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS-------GIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~-------~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.|+.++..++....+.+|.||+|||||+.+...+... ....+.+|+++.|+..++..+.+++.+
T Consensus 5 ~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 5 SQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4667776666666668889999999998766655544 144567999999999999999999887
No 204
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.74 E-value=0.014 Score=69.52 Aligned_cols=122 Identities=13% Similarity=0.181 Sum_probs=81.4
Q ss_pred CCeEEEEEEeeccCCccEEEEEcCCchhHHHHH-hhhhcccCCeeEEEecCc-----cccCcEEEcCCCcccCHHHHHhh
Q 000621 1004 FPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVK-DFFDLAIGGRYVRCEIGR-----RSMDAVVISGLDKELSEDEILGE 1077 (1387)
Q Consensus 1004 ~~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v~-~~~~~~i~~~~v~~~~~~-----~~~~~i~l~~l~~~~~~~di~~~ 1077 (1387)
+..+++...+....++|||+|.|.+.+.|...- ......+.++.+++..+. ....+|.+.|||..+|++||.++
T Consensus 134 V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~ 213 (346)
T TIGR01659 134 INTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 213 (346)
T ss_pred EEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHH
Confidence 344455455555568899999999888885444 455568889988875432 22456899999999999999998
Q ss_pred hhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEe-cccchHHHH
Q 000621 1078 LRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF-DGRLHLEAA 1156 (1387)
Q Consensus 1078 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F-d~~~~~~a~ 1156 (1387)
+.....- .++.+++... +. ..+--|+|+| +..+ |.
T Consensus 214 F~~fG~V--~~v~i~~d~~------------------------------------tg---~~kG~aFV~F~~~e~---A~ 249 (346)
T TIGR01659 214 FGKYGQI--VQKNILRDKL------------------------------------TG---TPRGVAFVRFNKREE---AQ 249 (346)
T ss_pred HHhcCCE--EEEEEeecCC------------------------------------CC---ccceEEEEEECCHHH---HH
Confidence 8654321 1111111100 11 1234699999 5556 99
Q ss_pred HHHHHhcCCccCC
Q 000621 1157 KALEQLEGKVLPG 1169 (1387)
Q Consensus 1157 ~al~~l~g~~lp~ 1169 (1387)
+|++.|+|..+.+
T Consensus 250 ~Ai~~lng~~~~g 262 (346)
T TIGR01659 250 EAISALNNVIPEG 262 (346)
T ss_pred HHHHHhCCCccCC
Confidence 9999999988765
No 205
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.73 E-value=0.0077 Score=79.97 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
...|++++..++.++++++|+|..|+||||.+ ..+.+.....+.+|+.+.||-.+|..+.+ .. +..
T Consensus 348 s~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~t-Gi~-------- 413 (988)
T PRK13889 348 SGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GS-GIA-------- 413 (988)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----cc-Ccc--------
Confidence 45677777777777889999999999999964 33333222235689999999887755542 10 100
Q ss_pred cCCCccccCCCcEEEEChhHHHHHhhc-CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 234 PSFSSAQHFDSKVIYMTDHCLLQHFMN-DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 234 ~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~-~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
-.|-..|+..+.. ...+...++|||||+- ++++..+..+++... ..+.++|++-=+
T Consensus 414 --------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 --------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred --------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 0122222221111 1246677999999998 677766666655432 346788887655
No 206
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.037 Score=71.27 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=75.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCC-CeEEE--eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAE-QSIVC--TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-~~Ilv--~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
.+.++.++||||+||||.+..+........+ .+|.+ .-+.|+.+....+.+.+..+ ..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-vp------------------ 244 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG-VP------------------ 244 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC-CC------------------
Confidence 3578899999999999986555433211222 24433 33567666555555555431 10
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH-hcccCccEEeecccCCHHHHH
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL-CRRFDLRLVIMSATADAHQLS 314 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~-~~~~~~kiIlmSATl~~~~~~ 314 (1387)
-.++.+|..+...+. .+.++++|+||=+- |+....-+...+..+. ...+.-.++++|||...+.+.
T Consensus 245 -v~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 245 -VHAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -ccccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 011226666655553 35577999999999 7765544555555544 344566788999998766554
No 207
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.65 E-value=0.007 Score=69.18 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEE
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVI 247 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Iv 247 (1387)
+.-.++--.||.||--++...|+++......+.+.+..+-.|-....+.+.............. .............|+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~-~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLN-KFKYGDIIRLKEGVL 140 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceech-hhccCcCCCCCCCcc
Confidence 3456666789999999998889887555555677776777777776777776642211111110 011111122345699
Q ss_pred EEChhHHHHHhhcCC----C-------C-Cc-eeEEEEcCccccccchhH-------HHHHHHHHHhcccCccEEeeccc
Q 000621 248 YMTDHCLLQHFMNDR----D-------L-SR-ISCIIVDEAHERSLNTDL-------LLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 248 v~Tpg~Ll~~l~~~~----~-------l-~~-l~~IIIDEaHer~~~~d~-------l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
|+|...|...-.... . + .+ =.+||+|||| ..-+..- .-.....+...-|+.+++.+|||
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH-~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SAT 219 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH-KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASAT 219 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch-hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccc
Confidence 999988876643211 1 1 11 2599999999 3333211 11112233444578899999999
Q ss_pred CC
Q 000621 308 AD 309 (1387)
Q Consensus 308 l~ 309 (1387)
..
T Consensus 220 ga 221 (303)
T PF13872_consen 220 GA 221 (303)
T ss_pred cc
Confidence 63
No 208
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=96.56 E-value=0.24 Score=62.09 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=79.3
Q ss_pred eEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHHh---hhcCceecCceeEE
Q 000621 912 LTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKAT---ELNGVEYNGSLLKV 988 (1387)
Q Consensus 912 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~---~~~~~~~~~~~l~v 988 (1387)
..|.|.|.+.. +++.++..++. --|.|.+|..+. ++ ..|.|.|+|++.|.+|. ..++..++|..|.|
T Consensus 3 ~vv~V~nLp~~-~te~~L~~~f~--~fG~V~~v~i~~------~k-~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 3 PVVHVRNLPQD-VVEADLVEALI--PFGPVSYVMMLP------GK-RQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred cEEEEcCCCCC-CCHHHHHHHHH--hcCCeeEEEEEC------CC-CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 46778876665 56777777663 347777877661 22 46999999999999983 35778899999998
Q ss_pred Eeeccc---cCC--------CCC---------cCCC-------------CeEEEEEEeeccCCccEEEEEcCCchhHHHH
Q 000621 989 VPSRAT---LGG--------DNK---------MYTF-------------PAVKAKVYWPRRLSKGFAVVKCDATDVEFLV 1035 (1387)
Q Consensus 989 ~~~~~~---~~g--------~~~---------~~~~-------------~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v 1035 (1387)
...... ..+ .+. .+.+ +-.+|.+ .+...+++|.|.|.+.+.|...
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i--~~~~~~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT--FTKNNVFQALVEFESVNSAQHA 150 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE--EecCCceEEEEEECCHHHHHHH
Confidence 754211 111 000 0000 0123444 4444557899999999998666
Q ss_pred Hhhhh-cccCC--eeEEEec
Q 000621 1036 KDFFD-LAIGG--RYVRCEI 1052 (1387)
Q Consensus 1036 ~~~~~-~~i~~--~~v~~~~ 1052 (1387)
-...+ ..+-| +.++++.
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred HHHhcCCcccCCceEEEEEE
Confidence 54444 44422 4555543
No 209
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.057 Score=65.56 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=72.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHcc--cc-CCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSG--IA-AEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHF 242 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~--~~-~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~ 242 (1387)
..+.++.++||||+||||.+..+..... .. ....++..-..|+.+.+....+++.++ ... .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp~--~------------- 252 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VSV--R------------- 252 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cce--e-------------
Confidence 4678899999999999997654443221 11 122344555667777666666666541 111 0
Q ss_pred CCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeecccCCHHHHHHH
Q 000621 243 DSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMSATADAHQLSKY 316 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmSATl~~~~~~~~ 316 (1387)
.+-++.-+...+. .+.+.++++||.+- |+.....+...++.+.... +.-.++++|||...+.+.+.
T Consensus 253 ----~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 253 ----SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 0112222222221 36678999999986 5554444455555554433 33456789999876665543
No 210
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.49 E-value=0.0071 Score=60.88 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKI 208 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~ 208 (1387)
+..+++.||+|||||+.+..++...... ...++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEc
Confidence 4678889999999999876655443221 124555555433
No 211
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.43 E-value=0.02 Score=65.71 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=66.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeE--EEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSI--VCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~I--lv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
..+.+++.|++|+||||.+....... ...+.++ +.+-+.|+.+.+......+.+ + .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~----------------~ 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTI-----G----------------F 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhc-----C----------------c
Confidence 44788889999999999654433222 1112333 333355544332222222211 0 1
Q ss_pred cEEE-EChhHHHHHhhcCCCCCceeEEEEcCcccccc-chhHHHHHHHHHHhcccCccEEeecccCCHHHHH
Q 000621 245 KVIY-MTDHCLLQHFMNDRDLSRISCIIVDEAHERSL-NTDLLLALVKDLLCRRFDLRLVIMSATADAHQLS 314 (1387)
Q Consensus 245 ~Ivv-~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~-~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~ 314 (1387)
.+.. .++..+.+.+..-....++++||||-+- |+. +.+.+..+.+.+....++..++.+|||...+...
T Consensus 132 ~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~ 202 (270)
T PRK06731 132 EVIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 202 (270)
T ss_pred eEEecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH
Confidence 1111 2455554443222223468999999998 665 3444444444444445566677899997654443
No 212
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.39 E-value=0.0073 Score=70.31 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=42.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-C----CCeEEEeccHHHHHHHHHHHHHH
Q 000621 160 DILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-A----EQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 160 ~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~----~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.+...+..++.+++.||||+|||++++..++..... . ..++++..+|..+..|....+.+
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 577778888999999999999999855544322111 1 23788889998887766555543
No 213
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.39 E-value=0.0073 Score=70.31 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=42.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcccc-C----CCeEEEeccHHHHHHHHHHHHHH
Q 000621 160 DILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIA-A----EQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 160 ~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~----~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.+...+..++.+++.||||+|||++++..++..... . ..++++..+|..+..|....+.+
T Consensus 19 ~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 19 ELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred HHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 577778888999999999999999855544322111 1 23788889998887766555543
No 214
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.091 Score=64.87 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=68.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCC-CeE--EEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAE-QSI--VCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-~~I--lv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
.+.++.+.||||+||||.+..+........+ .+| +-.-+.|+.|.+....+.+.++ .. +. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vp----v~--~--------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VP----VH--A--------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CC----ee--c---------
Confidence 4578999999999999986655533211212 233 3345667777766666666542 11 00 0
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeecccCCHHHHHH
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMSATADAHQLSK 315 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmSATl~~~~~~~ 315 (1387)
.-++.-+...+ ..+.+.++++||.+- |+.........+..+.... +.-.++.++||.....+.+
T Consensus 319 ----~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~ 383 (484)
T PRK06995 319 ----VKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE 383 (484)
T ss_pred ----cCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH
Confidence 00111111111 246677899999987 5544333333333332221 3336788999987665543
No 215
>PRK08181 transposase; Validated
Probab=96.30 E-value=0.14 Score=58.83 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=58.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
+..+..+++.||+|+|||..+..+.... ...+..++++ +...|..++. .....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g~~v~f~-~~~~L~~~l~----~a~~~--------------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLAL-IENGWRVLFT-RTTDLVQKLQ----VARRE--------------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHH-HHcCCceeee-eHHHHHHHHH----HHHhC---------------------
Confidence 4567788999999999997544333222 1224456654 3333333332 11100
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHHhc
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~f~ 318 (1387)
.+...+++ .+.++++|||||++....+......+...+...... +-+++|.-.++..+...|+
T Consensus 156 ----~~~~~~l~------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~ 218 (269)
T PRK08181 156 ----LQLESAIA------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWNRVFP 218 (269)
T ss_pred ----CcHHHHHH------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcC
Confidence 01112222 245789999999994333322222233333322223 3455555666666666664
No 216
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.27 E-value=0.0072 Score=64.47 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=74.3
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCC----CceEeccCCCCHhhhhhhhccC-CCceEEEEecc--hhhcCCCCCC--c
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPS----AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATN--VAETSLTIPG--V 435 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~----~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~--iae~GIdIp~--V 435 (1387)
..+|.+|||+||....+.+.+.+.... +.+..- ...+...+++.| .+...|++|+. .+..|||+|+ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 446999999999999999999988643 222222 245677788888 77888999998 9999999996 8
Q ss_pred eEEEecCCCccccccCCCC-------------cccceecccCHhhHHHHhcccCCCCCCeEEEeecc
Q 000621 436 KFVIDSGMVKESYFEPGTG-------------MNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSK 489 (1387)
Q Consensus 436 ~~VId~g~~k~~~yd~~~~-------------~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~ 489 (1387)
+.||-.|+|-....||... .... ..+..--...|-+||+=|...-.+..+.-.
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDW-YLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHH-THHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhH-hhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 8999999986443333211 1111 112223467899999999875555444433
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.21 E-value=0.17 Score=57.37 Aligned_cols=114 Identities=15% Similarity=0.267 Sum_probs=61.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEEE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIY 248 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv 248 (1387)
..+++.|++|+|||..+..++... ...+..++++ +... +...+...+.. . .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~i-t~~~----l~~~l~~~~~~--------------~----~----- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLII-TVAD----IMSAMKDTFSN--------------S----E----- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEE-EHHH----HHHHHHHHHhh--------------c----c-----
Confidence 578889999999998654443332 2224456655 2222 22333222100 0 0
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeecccCCHHHHHHHhc
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmSATl~~~~~~~~f~ 318 (1387)
.+...+++. +.++++|||||++. ...+++...++-.+...| .+.+-+++|.-++.+.+.+.++
T Consensus 151 ~~~~~~l~~------l~~~dlLvIDDig~-~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 151 TSEEQLLND------LSNVDLLVIDEIGV-QTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred ccHHHHHHH------hccCCEEEEeCCCC-CCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 122233332 45789999999994 336666666655554433 2234445555566666665553
No 218
>PRK06526 transposase; Provisional
Probab=96.13 E-value=0.011 Score=67.27 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 164 RIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 164 ~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
.+..+.++++.||+|+|||..+..+..+. ...+.+++++
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~v~f~ 132 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFA 132 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH-HHCCCchhhh
Confidence 34567788999999999998654443332 2224456553
No 219
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.08 E-value=0.031 Score=74.86 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEe
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICY 233 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~ 233 (1387)
...|+.++..+...+++.+|+|+.|+||||.+-.. .+.....+.+|+.+.||--+|..+.+ .. +...
T Consensus 383 s~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~-~~~~e~~G~~V~g~ApTgkAA~~L~e----~~-Gi~a------- 449 (1102)
T PRK13826 383 SDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAA-REAWEAAGYRVVGGALAGKAAEGLEK----EA-GIQS------- 449 (1102)
T ss_pred CHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHH-HHHHHHcCCeEEEEcCcHHHHHHHHH----hh-CCCe-------
Confidence 44566666655567899999999999999975432 23222235689999999887766542 21 1100
Q ss_pred cCCCccccCCCcEEEEChhHH-HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 234 PSFSSAQHFDSKVIYMTDHCL-LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 234 ~~~~~~~~~~~~Ivv~Tpg~L-l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
.|-..+ ++.-.....+..-++||||||. |+++..+..+++.+. ..+.++|++-=+
T Consensus 450 ---------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 ---------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred ---------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 111111 1111112246667899999998 778777777766553 245788887655
No 220
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.06 E-value=0.023 Score=68.45 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=60.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHH--HHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISL--AQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~ql--a~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
.....++|.|+-|+|||+.+-.+. ......+..+++++||.++|..+ ...+-..++ ... +. .. .
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~-~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~----~~----~~----~ 85 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAII-DYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI----NN----NE----K 85 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHH-HHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc----cc----cc----c
Confidence 566788899999999998654333 22233456899999999998777 233333221 110 00 00 0
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL 293 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~ 293 (1387)
...-......+ ...+.+.++|||||+= ++..+.+..+-+.+.
T Consensus 86 ~~~~~~~~~~~------~~~l~~~~~lIiDEis--m~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 86 SQCKISKNSRL------RERLRKADVLIIDEIS--MVSADMLDAIDRRLR 127 (364)
T ss_pred ccccccccchh------hhhhhhheeeeccccc--chhHHHHHHHHHhhh
Confidence 00000000011 1247788999999997 566655555544443
No 221
>PRK08727 hypothetical protein; Validated
Probab=96.04 E-value=0.033 Score=62.80 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
.+.+++.|++|+|||..+-.+... ....+.+++++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~ 75 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA-AEQAGRSSAYL 75 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEE
Confidence 356888999999999754333222 22223456654
No 222
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.98 E-value=0.014 Score=74.96 Aligned_cols=66 Identities=18% Similarity=0.314 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
-..|+.++..++...+.++|.||+|+|||+.+...+... ...+.+|+++.|+..++.++.+++...
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 446777888877777899999999999999766655443 223558999999999999999988763
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.86 E-value=0.067 Score=62.11 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=48.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcccc-CCCe--EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIA-AEQS--IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFD 243 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~-~~~~--Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~ 243 (1387)
...+++++||||+||||.+..++...... .+.+ ++-+-|.|..+......+++.++ .. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~-~p----~------------- 254 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG-VP----V------------- 254 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC-Cc----e-------------
Confidence 45688899999999999866555433221 1123 34456667666555555544431 11 0
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCc
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEA 275 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEa 275 (1387)
....++.-+...+. .+.++++|+||.+
T Consensus 255 --~~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 255 --KVARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --eccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 01123444544443 2456899999975
No 224
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=95.86 E-value=0.067 Score=67.49 Aligned_cols=125 Identities=18% Similarity=0.309 Sum_probs=80.0
Q ss_pred EEEEEEeec--cCCccEEEEEcCCchhHHHHHh-hhhcccCCeeEEEecCccc----------------cCcEEEcCCCc
Q 000621 1007 VKAKVYWPR--RLSKGFAVVKCDATDVEFLVKD-FFDLAIGGRYVRCEIGRRS----------------MDAVVISGLDK 1067 (1387)
Q Consensus 1007 ~~v~~sW~r--~~~~~~~~l~f~~~~~a~~v~~-~~~~~i~~~~v~~~~~~~~----------------~~~i~l~~l~~ 1067 (1387)
..+++.|.+ ..++|||+|.|.+.+.|...-. +....++|+.++...+... ..+|.+.|||.
T Consensus 135 ~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~ 214 (612)
T TIGR01645 135 KSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHP 214 (612)
T ss_pred EEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCC
Confidence 345566643 3488999999999999955554 5456889998887433211 13567778888
Q ss_pred ccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEe
Q 000621 1068 ELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF 1147 (1387)
Q Consensus 1068 ~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F 1147 (1387)
.++++||.+.+.... ....+++.-.+.. .-.+--|++.|
T Consensus 215 ~vteedLk~lFs~FG----------------------------------------~I~svrl~~D~~t-gksKGfGFVeF 253 (612)
T TIGR01645 215 DLSETDIKSVFEAFG----------------------------------------EIVKCQLARAPTG-RGHKGYGFIEY 253 (612)
T ss_pred CCCHHHHHHHHhhcC----------------------------------------CeeEEEEEecCCC-CCcCCeEEEEE
Confidence 888877777765322 1222333222211 12345689999
Q ss_pred -cccchHHHHHHHHHhcCCccCCCCCCceeEEe
Q 000621 1148 -DGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQ 1179 (1387)
Q Consensus 1148 -d~~~~~~a~~al~~l~g~~lp~~~~~~kl~~q 1179 (1387)
+..+ |.+|++.|||..+-+ .+|.|.
T Consensus 254 e~~e~---A~kAI~amNg~elgG----r~LrV~ 279 (612)
T TIGR01645 254 NNLQS---QSEAIASMNLFDLGG----QYLRVG 279 (612)
T ss_pred CCHHH---HHHHHHHhCCCeeCC----eEEEEE
Confidence 5445 999999999887655 466663
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.83 E-value=0.037 Score=64.05 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHcccc--CCCeEEEeccH
Q 000621 150 DGLPIYMYRQDILRRIYGE--QILVLIGETGCGKSTQLVQFLADSGIA--AEQSIVCTQPR 206 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~~~--~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~Ilv~~P~ 206 (1387)
.-.|...+|...++++... +.|.+.|+.|||||+.++..-+++... .-.+|+++-|+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 3578888999999998776 567778999999998655555554322 23589998887
No 226
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.83 E-value=0.036 Score=71.39 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=92.2
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccCCCc---eEEEEecchhhcCCCCCCceEEEec
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSYPGR---RKVIFATNVAETSLTIPGVKFVIDS 441 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f~g~---~kVLVaT~iae~GIdIp~V~~VId~ 441 (1387)
..+.++|||..=....+-+-..|.-+|+..+-+.|....++|...++.|+.. ...|++|-..+.|||+-+.+.||-|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 4678999998888888888888888999999999999999999999999422 3668999999999999999999954
Q ss_pred CCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc
Q 000621 442 GMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 442 g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 493 (1387)
+- -+|| +. -+++.-|+-|.|+++.=..|+|+++...+
T Consensus 1354 Ds----DwNP----tM-------DaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1354 DS----DWNP----TM-------DAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred cC----CCCc----hh-------hhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 32 2222 11 26677888888888889999999987553
No 227
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.83 E-value=0.059 Score=64.57 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=82.1
Q ss_pred CCCeEEEEEEeeccCCccEEEEEcCCchhH-HHHHhhhhcccCCeeEEEecCcc-----ccCcEEEcCCCcccCHHHHHh
Q 000621 1003 TFPAVKAKVYWPRRLSKGFAVVKCDATDVE-FLVKDFFDLAIGGRYVRCEIGRR-----SMDAVVISGLDKELSEDEILG 1076 (1387)
Q Consensus 1003 ~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a-~~v~~~~~~~i~~~~v~~~~~~~-----~~~~i~l~~l~~~~~~~di~~ 1076 (1387)
.+..+++........++|||+|.|.+.+-| ..+.......+.|+.+..+.... ...++.+.|||..++++|+.+
T Consensus 29 ~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 108 (352)
T TIGR01661 29 EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELES 108 (352)
T ss_pred CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHH
Confidence 444555555555566899999999987777 55555666789999998744321 134689999999999999988
Q ss_pred hhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEec-ccchHHH
Q 000621 1077 ELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFD-GRLHLEA 1155 (1387)
Q Consensus 1077 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~Fd-~~~~~~a 1155 (1387)
++..... +..+.++ ...... -.+--|+++|+ ..+ |
T Consensus 109 ~f~~~G~--i~~~~~~--------------------------------------~~~~~~-~~~g~~fv~f~~~~~---A 144 (352)
T TIGR01661 109 IFSPFGQ--IITSRIL--------------------------------------SDNVTG-LSKGVGFIRFDKRDE---A 144 (352)
T ss_pred HHhccCC--EEEEEEE--------------------------------------ecCCCC-CcCcEEEEEECCHHH---H
Confidence 8865331 1111111 111000 12345889994 445 9
Q ss_pred HHHHHHhcCCccCCC
Q 000621 1156 AKALEQLEGKVLPGC 1170 (1387)
Q Consensus 1156 ~~al~~l~g~~lp~~ 1170 (1387)
.+|++.|+|..+.++
T Consensus 145 ~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 145 DRAIKTLNGTTPSGC 159 (352)
T ss_pred HHHHHHhCCCccCCC
Confidence 999999999988764
No 228
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.81 E-value=0.077 Score=62.51 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=67.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe--ccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT--QPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~--~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...+++++||+|+||||.+........ ..+++|+++ -+.|..|.+.....+...+ +.+.... .. .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~-------i~~~~~~-~~--~-- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVG-------VPVIAQK-EG--A-- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcC-------ceEEEeC-CC--C--
Confidence 457888999999999997554443222 224455543 3456665544444444431 1111110 00 0
Q ss_pred cEEEEChhH-HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-------cccCccEEeecccCCHHHH
Q 000621 245 KVIYMTDHC-LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-------RRFDLRLVIMSATADAHQL 313 (1387)
Q Consensus 245 ~Ivv~Tpg~-Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-------~~~~~kiIlmSATl~~~~~ 313 (1387)
.|.. ..+.+. .....++++||||=+- |+...+.+...++.+.. ..++-.++.++||...+.+
T Consensus 180 -----dpa~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~ 249 (318)
T PRK10416 180 -----DPASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL 249 (318)
T ss_pred -----CHHHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH
Confidence 1111 111111 1124678999999999 76655554444444332 2355678899999755443
No 229
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.80 E-value=0.23 Score=71.55 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEE
Q 000621 154 IYMYRQDILRRIYG-EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVIC 232 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~ 232 (1387)
...|+.++-.++.+ +++.+|.|+.|+||||.+-..+ +.....+..|+++.|+.-+|..+.+...... .++.-
T Consensus 431 s~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A------~Ti~~ 503 (1960)
T TIGR02760 431 SPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLASEQGYEIQIITAGSLSAQELRQKIPRLA------STFIT 503 (1960)
T ss_pred CHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHHHHHHhcchh------hhHHH
Confidence 34577777777765 5899999999999999643322 2222335689999999888777765432211 00000
Q ss_pred ecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc--C--
Q 000621 233 YPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT--A-- 308 (1387)
Q Consensus 233 ~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT--l-- 308 (1387)
... ... ......|...++ ..+..+..-++||||||- ++++.....+++... ..+.|+|++-=+ +
T Consensus 504 ~l~---~l~--~~~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~~QL~s 571 (1960)
T TIGR02760 504 WVK---NLF--NDDQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDSAQRQG 571 (1960)
T ss_pred HHH---hhc--ccccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcChhhcCc
Confidence 000 000 000111222222 122345677999999998 777776666666543 345788887655 1
Q ss_pred --CHHHHHHHhc-cCCeeeeeccc-ceeEEEEecCCCCCCccchhhHHHHHHHHHHhhhccCCCcEEEEeCCHHHHHHHH
Q 000621 309 --DAHQLSKYFY-DCGISHVVGRN-FPVDVRYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWAC 384 (1387)
Q Consensus 309 --~~~~~~~~f~-~~~v~~i~gr~-~pv~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF~~s~~eie~l~ 384 (1387)
....|..... +.+........ ....+...... .......+......+. .....++|+.++..+...+.
T Consensus 572 V~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~------~~~r~~~ia~~y~~L~--~~r~~tliv~~t~~dr~~Ln 643 (1960)
T TIGR02760 572 MSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAV------DKLRVDYIASAWLDLT--PDRQNSQVLATTHREQQDLT 643 (1960)
T ss_pred cccchHHHHHHHCCCcEEEeecccccCcceeeeccC------chHHHHHHHHHHHhcc--cccCceEEEcCCcHHHHHHH
Confidence 2234443222 23433332110 01111111110 0111122333333222 23446999999999998887
Q ss_pred HHhc
Q 000621 385 EKFD 388 (1387)
Q Consensus 385 ~~L~ 388 (1387)
..++
T Consensus 644 ~~iR 647 (1960)
T TIGR02760 644 QIIR 647 (1960)
T ss_pred HHHH
Confidence 7664
No 230
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.79 E-value=0.068 Score=59.19 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhccCCCcHHHHHHHHHHHhc---CCeEEEEcCCCCcHHHHHHHHHHHccccCCC-eEEEeccHHHHHHHH
Q 000621 138 QAFIVRECKRLEDGLPIYMYRQDILRRIYG---EQILVLIGETGCGKSTQLVQFLADSGIAAEQ-SIVCTQPRKIAAISL 213 (1387)
Q Consensus 138 ~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~---~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~-~Ilv~~P~r~LA~ql 213 (1387)
+.+++-++.. .+-+..-|.++...+.+ +.+.+.+.-.|.|||+++..++.-. ...+. -+.+++|. .|..|.
T Consensus 11 P~wLl~E~e~---~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~-LAdg~~LvrviVpk-~Ll~q~ 85 (229)
T PF12340_consen 11 PDWLLFEIES---NILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA-LADGSRLVRVIVPK-ALLEQM 85 (229)
T ss_pred hHHHHHHHHc---CceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH-HcCCCcEEEEEcCH-HHHHHH
Confidence 3445555553 55555666666666654 3567779999999999865554433 33343 34466675 577777
Q ss_pred HHHHHHHhcCCCCCccEEEecCCCcccc-----------------CCCcEEEEChhHHHHH
Q 000621 214 AQRVREESRGCYEDDSVICYPSFSSAQH-----------------FDSKVIYMTDHCLLQH 257 (1387)
Q Consensus 214 a~rv~~~~~~~~~~~~vg~~~~~~~~~~-----------------~~~~Ivv~Tpg~Ll~~ 257 (1387)
.+.+...+++.. +.. .+...|+.... ....|+++||+.++..
T Consensus 86 ~~~L~~~lg~l~-~r~-i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 86 RQMLRSRLGGLL-NRR-IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHh-CCe-eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 777777665432 222 23333332211 2457999999987643
No 231
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.75 E-value=0.14 Score=64.56 Aligned_cols=151 Identities=21% Similarity=0.146 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCC------C-CccE
Q 000621 158 RQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCY------E-DDSV 230 (1387)
Q Consensus 158 ~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~------~-~~~v 230 (1387)
-+++.+..+.+-. ++.+|=|.|||+.+..++.......+.+|++++|+..-+.++.+++...+.... . +..+
T Consensus 178 id~~~~~fkq~~t-V~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv 256 (752)
T PHA03333 178 IDRIFDEYGKCYT-AATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIV 256 (752)
T ss_pred HHHHHHHHhhcce-EEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEE
Confidence 3344444444444 446899999999755443322221356899999999999999988887664111 1 1001
Q ss_pred EEecCCC-----c--ccc-CCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEE
Q 000621 231 ICYPSFS-----S--AQH-FDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLV 302 (1387)
Q Consensus 231 g~~~~~~-----~--~~~-~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiI 302 (1387)
....+.+ . ... ..+.|.|++.+. +...-..++++|+|||+ .+..+.+..++-.+.. .+.+++
T Consensus 257 ~vkgg~E~I~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~I 326 (752)
T PHA03333 257 TLKGTDENLEYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQI 326 (752)
T ss_pred EeeCCeeEEEEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceE
Confidence 1110000 0 000 114555544331 11121356899999999 3455666665554433 367899
Q ss_pred eecccCCHHHHHHHhcc
Q 000621 303 IMSATADAHQLSKYFYD 319 (1387)
Q Consensus 303 lmSATl~~~~~~~~f~~ 319 (1387)
++|.+-+.+.+-.++.+
T Consensus 327 iISS~~~~~s~tS~L~n 343 (752)
T PHA03333 327 HISSPVDADSWISRVGE 343 (752)
T ss_pred EEeCCCCcchHHHHhhh
Confidence 99999877776666654
No 232
>PF05729 NACHT: NACHT domain
Probab=95.68 E-value=0.033 Score=58.46 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=33.3
Q ss_pred EEEEcCccccccchhH-----HHHHHHHHHhc--ccCccEEeecccCCHHHHHHHhccC
Q 000621 269 CIIVDEAHERSLNTDL-----LLALVKDLLCR--RFDLRLVIMSATADAHQLSKYFYDC 320 (1387)
Q Consensus 269 ~IIIDEaHer~~~~d~-----l~~~lk~l~~~--~~~~kiIlmSATl~~~~~~~~f~~~ 320 (1387)
++|||=+||....... ....+..+... .++.++++.|.+-....+...+...
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~ 142 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA 142 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC
Confidence 4888988875543322 33444444443 6788988888877766677766544
No 233
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.66 E-value=0.0069 Score=64.66 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=53.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC-------CCccccCCC
Q 000621 172 VLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS-------FSSAQHFDS 244 (1387)
Q Consensus 172 iI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~-------~~~~~~~~~ 244 (1387)
+|+|+-|-|||+++-..+.........+|+|+.|+...+..+.+.+...+.. .++... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKA------LGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccc------cccccccccccccccccccccc
Confidence 4689999999997665543332222347999999999888887766544321 111110 001112356
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
.|.|..|..+... -...+++|||||= ++... +++.+... ...++||.|.
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p----~L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA--AIPLP----LLKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG--GS-HH----HHHHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh--cCCHH----HHHHHHhh---CCEEEEEeec
Confidence 7888888877532 2235899999997 44433 34444333 3466778885
No 234
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.055 Score=64.83 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=87.3
Q ss_pred CccEEEEEcCCchhHHHHHhhhhc-ccCCeeEEEecCccccCcEEEcCCCcccCHHHHHhhhhccccccccceeeeeccc
Q 000621 1018 SKGFAVVKCDATDVEFLVKDFFDL-AIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDA 1096 (1387)
Q Consensus 1018 ~~~~~~l~f~~~~~a~~v~~~~~~-~i~~~~v~~~~~~~~~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~ 1096 (1387)
|-|||+|+|.+++=|.+.-+.+|. .+.|+.++.-|+++++..+.+.|||+.+|.++|.|.+-.-++
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~------------- 102 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGN------------- 102 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeeecCCCcccCcHHHHHHHHhhcC-------------
Confidence 889999999998888777777775 899999999999999999999999999999999998743221
Q ss_pred CCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEecccchHHHHHHHHHhcCCccCCCCCCcee
Q 000621 1097 VECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVLPGCGPWQKM 1176 (1387)
Q Consensus 1097 ~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~Fd~~~~~~a~~al~~l~g~~lp~~~~~~kl 1176 (1387)
.-.|+|-..... .... +|.|+.. .+|.+|.+.+||+-+-+. ++
T Consensus 103 ---------------------------ilS~kv~~~~~g---~kg~-FV~f~~e--~~a~~ai~~~ng~ll~~k----ki 145 (369)
T KOG0123|consen 103 ---------------------------ILSCKVATDENG---SKGY-FVQFESE--ESAKKAIEKLNGMLLNGK----KI 145 (369)
T ss_pred ---------------------------eeEEEEEEcCCC---ceee-EEEeCCH--HHHHHHHHHhcCcccCCC----ee
Confidence 333666666554 4445 8888442 239999999999987764 66
Q ss_pred EE
Q 000621 1177 KC 1178 (1387)
Q Consensus 1177 ~~ 1178 (1387)
.|
T Consensus 146 ~v 147 (369)
T KOG0123|consen 146 YV 147 (369)
T ss_pred EE
Confidence 55
No 235
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=95.61 E-value=0.06 Score=58.65 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=79.2
Q ss_pred eccCCccEEEEEcC-CchhHHHHHhhhhcccCCeeEEEecCccc-----cCcEEEcCCCcccCHHHHHhhhhcccccccc
Q 000621 1014 PRRLSKGFAVVKCD-ATDVEFLVKDFFDLAIGGRYVRCEIGRRS-----MDAVVISGLDKELSEDEILGELRKVTTRRIR 1087 (1387)
Q Consensus 1014 ~r~~~~~~~~l~f~-~~~~a~~v~~~~~~~i~~~~v~~~~~~~~-----~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~ 1087 (1387)
-...+-||+.|++- ..|+...++-...+++..+.+..+-.... .-.+-++|||+.+|.+|+.+++.+-. +
T Consensus 78 itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fG-r--- 153 (360)
T KOG0145|consen 78 ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFG-R--- 153 (360)
T ss_pred ccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhh-h---
Confidence 35567888999995 45555777777778888887775322222 33458999999999999999997633 1
Q ss_pred ceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEecccchHHHHHHHHHhcCCcc
Q 000621 1088 DLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQLEGKVL 1167 (1387)
Q Consensus 1088 ~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~Fd~~~~~~a~~al~~l~g~~l 1167 (1387)
.+- .||.- -++.-- .+--+++|||.++ ||-+|...|||..=
T Consensus 154 -----------------IIt---SRiL~-------------dqvtg~----srGVgFiRFDKr~--EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 154 -----------------IIT---SRILV-------------DQVTGL----SRGVGFIRFDKRI--EAEEAIKGLNGQKP 194 (360)
T ss_pred -----------------hhh---hhhhh-------------hcccce----ecceeEEEecchh--HHHHHHHhccCCCC
Confidence 111 11110 023322 5667999999986 69999999999998
Q ss_pred CCC
Q 000621 1168 PGC 1170 (1387)
Q Consensus 1168 p~~ 1170 (1387)
++|
T Consensus 195 ~g~ 197 (360)
T KOG0145|consen 195 SGC 197 (360)
T ss_pred CCC
Confidence 876
No 236
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=95.60 E-value=0.28 Score=62.00 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCchhHHHHHhhhhcccCCeeEEEe
Q 000621 1017 LSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCE 1051 (1387)
Q Consensus 1017 ~~~~~~~l~f~~~~~a~~v~~~~~~~i~~~~v~~~ 1051 (1387)
..+|||+|.|.+.+.|...-......+.|+.+.+.
T Consensus 221 ~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~ 255 (509)
T TIGR01642 221 KEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIR 255 (509)
T ss_pred CCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEec
Confidence 36789999999999885544444457777777764
No 237
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=95.57 E-value=0.16 Score=64.06 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=90.4
Q ss_pred CeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEE
Q 000621 910 RFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKV 988 (1387)
Q Consensus 910 df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v 988 (1387)
.++.+.|.|.+.. .++.++..+|.. .|.|.+|+..... ........|.|.|++++.|.+| .++++..+.|..|+|
T Consensus 106 ~~~rLfVGnLp~~-~tEe~Lr~lF~~--fG~I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 106 IMCRVYVGSISFE-LREDTIRRAFDP--FGPIKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHc--cCCEEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 4577888876554 456666666643 4667777655111 1123445679999999999999 579999999999998
Q ss_pred Eeecccc---------------------CCC-------------CCcCCCCeEEEEEEeeccCCccEEEEEcCCchhH-H
Q 000621 989 VPSRATL---------------------GGD-------------NKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVE-F 1033 (1387)
Q Consensus 989 ~~~~~~~---------------------~g~-------------~~~~~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a-~ 1033 (1387)
....... +|- .....+..+++...+....++|||+|.|.+.+.| .
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 6321100 110 0001222222322233345889999999998877 6
Q ss_pred HHHhhhhcccCCeeEEEecCc
Q 000621 1034 LVKDFFDLAIGGRYVRCEIGR 1054 (1387)
Q Consensus 1034 ~v~~~~~~~i~~~~v~~~~~~ 1054 (1387)
.+..+....++|++++.....
T Consensus 262 AI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecC
Confidence 677777789999999974443
No 238
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=95.56 E-value=0.096 Score=65.22 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=82.4
Q ss_pred CeEEEEEEeeccCCccEEEEEcCCchhHHHHHhhhhcccCCeeEEEecCccc-----------------cCcEEEcCCCc
Q 000621 1005 PAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFDLAIGGRYVRCEIGRRS-----------------MDAVVISGLDK 1067 (1387)
Q Consensus 1005 ~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v~~~~~~~i~~~~v~~~~~~~~-----------------~~~i~l~~l~~ 1067 (1387)
..+++...-....++|+|+|.|.+.+-|...-......+.|+.|.++.+... ..+|.+.|||.
T Consensus 117 ~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~ 196 (457)
T TIGR01622 117 RDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHF 196 (457)
T ss_pred eEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCC
Confidence 3333333334456889999999999988666666667888998887543211 24688999999
Q ss_pred ccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccceeEEEEe
Q 000621 1068 ELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITF 1147 (1387)
Q Consensus 1068 ~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~F 1147 (1387)
.+|++||.+++.... ....+.+.-.+.. ....--|+|.|
T Consensus 197 ~~te~~l~~~f~~~G----------------------------------------~i~~v~~~~d~~~-g~~~g~afV~f 235 (457)
T TIGR01622 197 NITEQELRQIFEPFG----------------------------------------DIEDVQLHRDPET-GRSKGFGFIQF 235 (457)
T ss_pred CCCHHHHHHHHHhcC----------------------------------------CeEEEEEEEcCCC-CccceEEEEEE
Confidence 999999888774322 1122222211111 02344689999
Q ss_pred -cccchHHHHHHHHHhcCCccCCCCCCceeEEee
Q 000621 1148 -DGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQ 1180 (1387)
Q Consensus 1148 -d~~~~~~a~~al~~l~g~~lp~~~~~~kl~~q~ 1180 (1387)
+... |.+|++.|+|..+-+ ..|.|+.
T Consensus 236 ~~~e~---A~~A~~~l~g~~i~g----~~i~v~~ 262 (457)
T TIGR01622 236 HDAEE---AKEALEVMNGFELAG----RPIKVGY 262 (457)
T ss_pred CCHHH---HHHHHHhcCCcEECC----EEEEEEE
Confidence 5445 999999999977654 3566543
No 239
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.54 E-value=0.028 Score=65.87 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHH---HHccccCCCeEEEeccHHHHHHHHHHHHHHHh
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFL---ADSGIAAEQSIVCTQPRKIAAISLAQRVREES 221 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~l---l~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~ 221 (1387)
.|..++.. .+..++|.|..|||||+++..-+ +........+|+|+.+|+.+|..+.+|+...+
T Consensus 4 eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 4 EQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp HHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 34444444 56667778999999999865433 33332345689999999999999999999876
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.48 E-value=0.12 Score=59.62 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=67.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe--ccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT--QPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~--~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...+++++|++|+||||.+..+..... ..+.+|+++ -+.|..|......+.+..+ +...... .. .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-------i~~~~~~-~~--~-- 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-------VDVIKQK-EG--A-- 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-------eEEEeCC-CC--C--
Confidence 346888889999999997555443321 223455443 4567766555555555431 1111000 00 0
Q ss_pred cEEEEChhH-HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cc------cCccEEeecccCCHHHH
Q 000621 245 KVIYMTDHC-LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RR------FDLRLVIMSATADAHQL 313 (1387)
Q Consensus 245 ~Ivv~Tpg~-Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~------~~~kiIlmSATl~~~~~ 313 (1387)
-|.. ..+.+.. ....++++||||=+- |......+..-++.+.. .. ++-.++.++||...+.+
T Consensus 138 -----dp~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 138 -----DPAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred -----CHHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 1222 1222211 124578999999998 65543333333333322 22 56778899999755443
No 241
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.11 Score=62.16 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+.+.+...+....+.++||||||. ++......+++.+..-+++..+|++|
T Consensus 129 l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 129 VGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred HHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 444555555667889999999993 45556677777776644455555554
No 242
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.08 Score=67.11 Aligned_cols=48 Identities=27% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
..+...+...++.++|||||| ++..+....+++.+..-++.+.+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 334444567889999999999 345556667777776655556565544
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.24 E-value=0.12 Score=57.94 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=22.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
....+++.||+|+|||+.+-.+... ....+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~-~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD-ASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHhCCCcEEEEe
Confidence 4567888999999999865443332 222233455443
No 244
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.19 E-value=0.26 Score=60.05 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEE--EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIV--CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Il--v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++|++|+||||.+..+..... ..+.+|+ .+=|.|..|....+..++..+ .. ..+....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp---~~~~~~~---------- 164 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKAR-IP---FYGSYTE---------- 164 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccC-Ce---EEeecCC----------
Confidence 36888999999999997554433221 1133433 345677777655555544321 10 0110000
Q ss_pred EEEEChhHHHH-HhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH-hcccCccEEeecccCC
Q 000621 246 VIYMTDHCLLQ-HFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL-CRRFDLRLVIMSATAD 309 (1387)
Q Consensus 246 Ivv~Tpg~Ll~-~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~-~~~~~~kiIlmSATl~ 309 (1387)
..|-.+.. .+..- .-.++++||||=+- |....+-+..-+..+. ...|+-.+++++||..
T Consensus 165 ---~dp~~i~~~~l~~~-~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 165 ---SDPVKIASEGVEKF-KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ---CCHHHHHHHHHHHH-HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 01111111 11110 11468999999998 5544433434344333 3456667788888863
No 245
>PRK05642 DNA replication initiation factor; Validated
Probab=95.19 E-value=0.1 Score=58.81 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHH
Q 000621 264 LSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQ 312 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~ 312 (1387)
+.+++++|||++|.-....+....+...+......-+.+++++|..+..
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~ 143 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRE 143 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence 3456899999999322222333334443333333335678888765543
No 246
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.17 E-value=0.081 Score=59.38 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=60.1
Q ss_pred eeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHHhhhcCceecCceeEEEe
Q 000621 911 FLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKVVP 990 (1387)
Q Consensus 911 f~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~~~~~~~~~~~~l~v~~ 990 (1387)
-.+|.|.|.+.. .++.++..|| ...|.|.+|.... ..+..+.|.|+|+||+.|..+..+++..+.|+.|.|.+
T Consensus 4 ~rtVfVgNLs~~-tTE~dLrefF--S~~G~I~~V~I~~----d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLK-ATERDIKEFF--SFSGDIEYVEMQS----ENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCC-CCHHHHHHHH--HhcCCeEEEEEee----cCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 468999987765 6788888888 5668888888761 12345678999999999999988999999999999886
Q ss_pred ec
Q 000621 991 SR 992 (1387)
Q Consensus 991 ~~ 992 (1387)
..
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 43
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.15 E-value=0.18 Score=56.35 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
.+..+++.||+|+|||+.+-.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45678889999999999765544
No 248
>PF13173 AAA_14: AAA domain
Probab=95.15 E-value=0.12 Score=52.55 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHc
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADS 192 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~ 192 (1387)
++++++|.||.|+||||.+-+++.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999888877554
No 249
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.14 E-value=0.11 Score=59.63 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.4
Q ss_pred CeEEEEcCCCCcHHHHH
Q 000621 169 QILVLIGETGCGKSTQL 185 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i 185 (1387)
..+++.||+|+|||+.+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46778999999999864
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.03 E-value=0.97 Score=53.59 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCceeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeecccCCHHHHHHHh
Q 000621 264 LSRISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmSATl~~~~~~~~f 317 (1387)
+.++++||||+.+ ....+++....+-.+...+ ..-+-+++|...+++.+...+
T Consensus 244 l~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 244 LINCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred hccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 4578999999999 4444555444443443332 222335556666655554433
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.17 Score=64.85 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
++.....+.-.+++++||||+| ++..+....++|.+..-.++.++|+.
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred HHHHHhccccCCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3333333445678999999999 34445566677766555445555543
No 252
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.14 Score=62.93 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCC
Q 000621 262 RDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD 309 (1387)
Q Consensus 262 ~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~ 309 (1387)
+.-.++.++|||||| ++..+....+++.+..-+ ..+++.-||-+
T Consensus 117 p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp--~~viFILaTte 160 (484)
T PRK14956 117 PMGGKYKVYIIDEVH--MLTDQSFNALLKTLEEPP--AHIVFILATTE 160 (484)
T ss_pred hhcCCCEEEEEechh--hcCHHHHHHHHHHhhcCC--CceEEEeecCC
Confidence 344578999999999 455666777777775433 34444445543
No 253
>PRK06893 DNA replication initiation factor; Validated
Probab=94.97 E-value=0.12 Score=58.17 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCceeEEEEcCccccccchhHHHHHHHHHHhccc-CccEEeecccCCHHHH
Q 000621 264 LSRISCIIVDEAHERSLNTDLLLALVKDLLCRRF-DLRLVIMSATADAHQL 313 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~-~~kiIlmSATl~~~~~ 313 (1387)
+.+.++|||||+|....+.+....+...+..... +.+++++|++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 3467899999999432233333333333333222 3456788888766544
No 254
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.96 E-value=0.042 Score=70.30 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
.|++++..++...+..+|.|=+|+||||.+...+. .....+++|+.+.=|-.+...+--++...
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIk-iL~~~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIK-ILVALGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHH-HHHHcCCeEEEEehhhHHHHHHHHHHhcc
Confidence 69999999999999999999999999997554432 22334679999998988877776666554
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.92 E-value=0.13 Score=58.04 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
...+++.||+|+|||..+-.+..... ..+.+++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 35788899999999986544333221 223455554
No 256
>PRK13763 putative RNA-processing protein; Provisional
Probab=94.87 E-value=0.17 Score=54.59 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=96.4
Q ss_pred EEEEEEEechhhHHHHHHHHHHHHHhccccCceEEEeeeCCCCcEEEEEe---eccchhHHHhhHhHHHhhcceEee---
Q 000621 1181 LFHSSLSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRIS---SNATKTVADLRRPVEELMRGRTVN--- 1254 (1387)
Q Consensus 1181 v~~~~~~v~~~vy~~v~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~vki~---g~~~~~va~~k~~le~il~G~~i~--- 1254 (1387)
.+..+++||..-...|.+..-+..+.+..+-++......+ .+ .|.|. +.+...+..|+.-++.|..|..++
T Consensus 2 ~~~~~i~IP~~kig~iIG~gGk~Ik~I~e~tg~~I~i~~~-~g--~V~I~~~~~~d~~~i~kA~~~I~ai~~gf~~e~A~ 78 (180)
T PRK13763 2 MMMEYVKIPKDRIGVLIGKKGETKKEIEERTGVKLEIDSE-TG--EVIIEPTDGEDPLAVLKARDIVKAIGRGFSPEKAL 78 (180)
T ss_pred CceEEEEcCHHHhhhHhccchhHHHHHHHHHCcEEEEECC-CC--eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3567899999999999888777777776666888877764 23 46677 789999999999999999873332
Q ss_pred -------------cCCCCcccc-----ccccChhhHHHHHhhhccceEEEEEecccceEEEcCCHhhHHHHHHHHHHHHH
Q 000621 1255 -------------HASLTPTIL-----QHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSLL 1316 (1387)
Q Consensus 1255 -------------~~~~~~~~~-----~~~~~~~g~~~l~~ie~~~~v~i~~d~~~~~~rifG~~~~~~~a~~~i~~~l~ 1316 (1387)
..+.++... .-.+-+.|-+-++.||..+|+.|..+.. .+.|-|++++++.|++.|..++.
T Consensus 79 ~l~gd~y~~~Vi~i~~~~~~~~~~~r~~griIG~~G~~~k~ie~~t~~~i~i~~~--~v~i~G~~~~~~~A~~~I~~li~ 156 (180)
T PRK13763 79 RLLDDDYVLEVIDLSDYGDSPNALRRIKGRIIGEGGKTRRIIEELTGVDISVYGK--TVAIIGDPEQVEIAREAIEMLIE 156 (180)
T ss_pred HHhCCCceEEEEEhhhccCChhHHHHHhhheeCCCcHHHHHHHHHHCcEEEEcCC--EEEEEeCHHHHHHHHHHHHHHHc
Confidence 111111100 1113334557889999999999999865 48899999999999999977743
No 257
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.11 Score=68.37 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 261 DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 261 ~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
.+...+++++||||+| + +..+....++|.+......+.+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad-~-lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAH-M-VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechh-h-cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3455788999999999 3 44556667777776666666666654
No 258
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.77 E-value=0.29 Score=58.17 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHH
Q 000621 158 RQDILRRIYGEQ--ILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 158 ~~~i~~~l~~~~--vviI~a~TGSGKTt~i~~~ll 190 (1387)
.+.+..++..+. .+++.||+|+|||+.+-.+..
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334444455554 788999999999997655443
No 259
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.60 E-value=0.053 Score=61.41 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll 190 (1387)
.+..++|+|||||||||.+..++-
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId 147 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMID 147 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHH
Confidence 567889999999999998766653
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.07 Score=69.42 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 261 DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 261 ~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
.+.-.++.++|||||| ++..+....++|.+..-+.++++|+.
T Consensus 114 ~P~~gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 3344678999999999 34566777778877665555666664
No 261
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.54 E-value=0.17 Score=56.00 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=62.1
Q ss_pred CCeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHHhhhcCceecCceeEE
Q 000621 909 RRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKATELNGVEYNGSLLKV 988 (1387)
Q Consensus 909 ~df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~~~~~~~~~~~~l~v 988 (1387)
++-.+|.|.|... ..+++++..|| ...|.|.+|+.. ........|.|+|.||..|..|..|++.++.|..|.|
T Consensus 3 ~~g~TV~V~NLS~-~tTE~dLrefF--S~~G~I~~V~I~----~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSP-KATEKDVYDFF--SHCGAIEHVEII----RSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCC-CCCHHHHHHHH--HhcCCeEEEEEe----cCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEE
Confidence 4567899996444 45677888888 778999999877 2233445689999999999999999999999999999
Q ss_pred Eeecc
Q 000621 989 VPSRA 993 (1387)
Q Consensus 989 ~~~~~ 993 (1387)
+|...
T Consensus 76 t~~~~ 80 (243)
T PLN03121 76 TRWGQ 80 (243)
T ss_pred EeCcc
Confidence 87654
No 262
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.53 E-value=0.13 Score=63.45 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=93.1
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC--CCceEEEEecchhhcCCCCCCceEEEecC
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY--PGRRKVIFATNVAETSLTIPGVKFVIDSG 442 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f--~g~~kVLVaT~iae~GIdIp~V~~VId~g 442 (1387)
..+.++|+|..-.+.++.+.++|.-.++..+.+.|+....+|..+...| +...-.|++|-+.+-||++-..+.||-++
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYd 1121 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYD 1121 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEec
Confidence 4567999999988889999999988999999999999999999999999 45667899999999999999999999654
Q ss_pred CCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeecccccc
Q 000621 443 MVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFE 493 (1387)
Q Consensus 443 ~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~ 493 (1387)
- -++|.. -.+++-|+-|-|.+..-.+|+|.+....+
T Consensus 1122 S----DWNPT~-----------D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1122 S----DWNPTA-----------DQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred C----CCCcch-----------hhHHHHHHHhccCccceeeeeecccccHH
Confidence 3 333321 14556777777777778899999987654
No 263
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.50 E-value=0.11 Score=59.58 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQFLAD 191 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~ 191 (1387)
...+++.||+|+||||.+-.++..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 457888999999999976655433
No 264
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.087 Score=66.08 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=29.3
Q ss_pred CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 261 DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 261 ~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
.+.-.+++++|||||| ++..+....+++.+..-++...+|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 4455688999999999 344455667777766655566666543
No 265
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.27 Score=62.78 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+......+...+++++|||||| + +..+....+++.+..-+....+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh-~-Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVH-M-LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChh-h-CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3344444566789999999999 3 44445556666665544445555543
No 266
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.28 Score=59.14 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+...+...+...+..++||||+| ++ ..+....+++.+...++..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~-~l-~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVH-ML-SRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChh-hc-CHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 33444444556778999999999 33 3334445666665555555565543
No 267
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.46 Score=60.69 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+...+...+.+.++++|||||+| + +.......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad-~-Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVH-M-LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChH-h-CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 44445555678889999999999 3 34444556666666555666666644
No 268
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.39 E-value=0.052 Score=66.55 Aligned_cols=65 Identities=14% Similarity=0.305 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
.-|...+..+.++.+.+|+||+|+|||......++.......+.|+|.+|.-++..|+|+.+.+.
T Consensus 413 ~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 413 ASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 34555566677889999999999999986555554443345779999999999999999998875
No 269
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.36 E-value=0.21 Score=52.02 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=22.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 171 LVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
++|.|++|+|||+.+.+++..... .+..++++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEE
Confidence 567899999999987666654432 345566543
No 270
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.28 Score=62.04 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+.+...+...+++++||||+| + ++......++|.+..-..++.+|+.|
T Consensus 114 e~~~~~P~~gr~KViIIDEah-~-Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVH-M-LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHhchhcCCceEEEEEChH-h-cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 333334456788999999999 3 44455667777766545556555543
No 271
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.43 Score=59.29 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=31.8
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
.......|...++.++||||+| ++..+....+++.+..-++...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344445677889999999999 344445566677766555555555543
No 272
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.094 Score=66.95 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
..+...+.-.++.++|||||| .+..+....++|.+..-++..++|+.
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 333344455688999999999 34555677778877655555555554
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.29 E-value=0.39 Score=58.92 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=61.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEE--EeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIV--CTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Il--v~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...+++++|++|+||||.+..+..... ..+.+++ ..-+.|..|......+++..+ . .+ +.... .
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-v----p~--~~~~~-----~- 159 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIG-V----PF--YGDPD-----N- 159 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcC-C----cE--EecCC-----c-
Confidence 346888899999999997554443221 1223333 334456655544444444321 1 01 00000 0
Q ss_pred cEEEEChhH-HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHH-hcccCccEEeecccCCH
Q 000621 245 KVIYMTDHC-LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLL-CRRFDLRLVIMSATADA 310 (1387)
Q Consensus 245 ~Ivv~Tpg~-Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~-~~~~~~kiIlmSATl~~ 310 (1387)
..|.. +.+.+.. +...++||||.+- |....+-+..-++.+. ...++.-++.++||...
T Consensus 160 ----~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 160 ----KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred ----cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 01222 2222221 2234899999997 4443333333333333 34567778888888643
No 274
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.29 E-value=0.48 Score=59.29 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccE
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRL 301 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~ki 301 (1387)
++......+...++.++||||+| + +.......+++.+...++...+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~-~-Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVH-M-LSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChh-h-cCHHHHHHHHHHHhhcCCCEEE
Confidence 33444455677889999999999 3 3344455566665543333333
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.12 Score=65.29 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 262 RDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 262 ~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
+...+++++|||||| ++.......+++.+...++...+|+.
T Consensus 114 P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 114 PTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred hhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 345678999999999 34444556666666555555555553
No 276
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.12 E-value=0.39 Score=61.65 Aligned_cols=146 Identities=21% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCC-eEEEEcCCCCcHHHHHHHHHHHccccC-CCeEEEeccHHHHHHHHHHHHHHHhcC
Q 000621 146 KRLEDGLPIYMYRQDILRRIYGEQ-ILVLIGETGCGKSTQLVQFLADSGIAA-EQSIVCTQPRKIAAISLAQRVREESRG 223 (1387)
Q Consensus 146 ~~~~~~lP~~~q~~~i~~~l~~~~-vviI~a~TGSGKTt~i~~~ll~~~~~~-~~~Ilv~~P~r~LA~qla~rv~~~~~~ 223 (1387)
.+.-...+-..+.+.+...+.... .++|+|.-|=|||.++-..+....... ..+|+||.|+.+.+..+.+...+-+..
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 333334454455555666666554 999999999999987543332211111 458999999999998888766654422
Q ss_pred CCCCccEEEecCCCc--cccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccE
Q 000621 224 CYEDDSVICYPSFSS--AQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRL 301 (1387)
Q Consensus 224 ~~~~~~vg~~~~~~~--~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~ki 301 (1387)
......+........ .......|-|.+|.... . .-+++|||||= .+...++..++. . .+.
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~~----~---~~r 349 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLLR----R---FPR 349 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHHh----h---cCc
Confidence 111111111110111 11123457788876654 1 15899999997 444444443332 2 267
Q ss_pred EeecccCC
Q 000621 302 VIMSATAD 309 (1387)
Q Consensus 302 IlmSATl~ 309 (1387)
++||.|+.
T Consensus 350 v~~sTTIh 357 (758)
T COG1444 350 VLFSTTIH 357 (758)
T ss_pred eEEEeeec
Confidence 89999963
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=94.11 E-value=0.36 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=24.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
+..+.++++.||+|+|||+.+..+.... ...+..+.++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a-~~~G~~v~~~ 136 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA-VRAGIKVRFT 136 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 4467788889999999998655443322 1234466665
No 278
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.10 E-value=0.15 Score=64.69 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=39.8
Q ss_pred cCCCceEEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCC---CCeEEE
Q 000621 412 SYPGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYR 485 (1387)
Q Consensus 412 ~f~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~---~G~~~~ 485 (1387)
.|+..++.|++--++-.|.|=|+|=.++-..- + -|-.+=.|.+||.-|-. .|.-++
T Consensus 479 SFd~plRFIFS~waLrEGWDNPNVFtIckL~~-------S-----------~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 479 SFDEPLRFIFSKWALREGWDNPNVFTICKLRS-------S-----------GSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred ccCCcceeeeehhHHhhcCCCCCeeEEEEecC-------C-----------CcchHHHHHhccceeeeeccccceec
Confidence 35556899999999999999999976663211 1 12344569999999963 565544
No 279
>PRK08116 hypothetical protein; Validated
Probab=94.05 E-value=0.29 Score=56.39 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
+..+++.|++|+|||..+..++.+. ...+..++++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l-~~~~~~v~~~ 148 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANEL-IEKGVPVIFV 148 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 4458889999999998644433222 2223455554
No 280
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.02 E-value=0.092 Score=56.64 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=53.5
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccC
Q 000621 163 RRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHF 242 (1387)
Q Consensus 163 ~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~ 242 (1387)
..+..+..+++.|+||+|||..+...+.+. ...+..++++ +...|...+ ..... . .
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~-~~~~L~~~l----~~~~~---------------~---~ 97 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFI-TASDLLDEL----KQSRS---------------D---G 97 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEE-EHHHHHHHH----HCCHC---------------C---T
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEe-ecCceeccc----ccccc---------------c---c
Confidence 334567889999999999998655444332 2234456654 333333322 21100 0 0
Q ss_pred CCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHH-HHHHHhcccCccEEeecccCCHHHHHHHhcc
Q 000621 243 DSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLAL-VKDLLCRRFDLRLVIMSATADAHQLSKYFYD 319 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~-lk~l~~~~~~~kiIlmSATl~~~~~~~~f~~ 319 (1387)
+.+.+++. +.+++++||||.--... ++..... ...+.....+..+| +|.-++.+.+.+.+++
T Consensus 98 -------~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tI-iTSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 98 -------SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTI-ITSNLSPSELEEVLGD 160 (178)
T ss_dssp -------THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEE-EEESS-HHHHHT----
T ss_pred -------chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeE-eeCCCchhhHhhcccc
Confidence 01122322 45779999999983222 2222222 23232222233444 4555777778877764
No 281
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.97 E-value=0.2 Score=65.12 Aligned_cols=103 Identities=24% Similarity=0.325 Sum_probs=65.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHH---HHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCc
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQ---FLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDD 228 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~---~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~ 228 (1387)
.|+..+|...+. ...+.++|.|..|||||+.+.. +++......+.+|+++..+|.+|..+.+|+.+..+
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg------ 266 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG------ 266 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC------
Confidence 455555544433 2344567789999999997543 34444434456899999999999999999987641
Q ss_pred cEEEecCCCccccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCcc
Q 000621 229 SVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAH 276 (1387)
Q Consensus 229 ~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaH 276 (1387)
...|.+.|-..|...+.... ....++.+..|+..
T Consensus 267 --------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 267 --------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred --------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 13578889877764443321 22334445556543
No 282
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.21 Score=62.86 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
++..+...+...+..++|||||| + +..+....+++.+..-++...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~-~-ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVH-M-LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechh-h-ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 44455555567788999999999 4 34445556666666544455565544
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=93.92 E-value=0.25 Score=54.30 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=29.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPR 206 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~ 206 (1387)
.+.+.++.||-+||||+.+++.+.... ..+.+++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~-~ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFT-YSEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHH-HcCCceEEEEec
Confidence 345678899999999998888776543 335677777776
No 284
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.91 E-value=0.22 Score=66.14 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ 188 (1387)
..++++.||+|+|||+.+-..
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357888999999999865443
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=93.82 E-value=0.39 Score=58.81 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCe--EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQS--IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~--Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++|++||||||.+..++.......+.+ ++..-++|..|....+.+++..+ +.++....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g-------v~v~~~~~-------- 164 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG-------VPVFPSGD-------- 164 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcC-------CeEEecCC--------
Confidence 45888899999999997655543321111233 44466788877644444444321 11111100
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEEeecccC
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATA 308 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiIlmSATl 308 (1387)
-..|..+...........++++||||=+- |....+-+...+..+.. ..|+--++.++||.
T Consensus 165 --~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 --GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 01334443322221234568999999998 65433333333333332 34444577788876
No 286
>CHL00181 cbbX CbbX; Provisional
Probab=93.82 E-value=0.31 Score=56.75 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~ 187 (1387)
..+++.||+|+|||+.+-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4577789999999996433
No 287
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.76 E-value=0.19 Score=64.22 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=29.5
Q ss_pred cCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 260 NDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 260 ~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
..+.+.+++++||||+| + +..+....+++.+...+....+|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad-~-Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVH-M-LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECcc-c-cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34466788999999999 3 44445556777766555566666544
No 288
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.75 E-value=0.37 Score=59.93 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccc-cCCCeEEEec
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQ 204 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~-~~~~~Ilv~~ 204 (1387)
+.+++.||+|+|||..+-.+..+... ..+.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 45788999999999854333322211 1134566653
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.75 E-value=0.076 Score=57.33 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 171 LVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
++|.||+|+|||+...+++.+.. ..+.+++++. +.+.+.++.++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s-~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVT-LEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEE-CCCCHHHHHHHHHH
Confidence 57799999999998888877654 3345566553 23444555555544
No 290
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.74 E-value=0.21 Score=56.98 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
....+.+||+|||| ++..|...++.+.+.......++++..
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEc
Confidence 56678999999999 566677777777776655566666654
No 291
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.74 E-value=0.14 Score=59.96 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc-cCCCeEEEeccHHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQPRKIAA 210 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~-~~~~~Ilv~~P~r~LA 210 (1387)
.+...+..++..+..++|+|+|||||||.+-.++..-.. ....+++++....++.
T Consensus 120 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 120 AQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 455667777888899999999999999975443322111 2246888888887763
No 292
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.68 E-value=0.4 Score=56.62 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~l 189 (1387)
..+++.||+|+|||+.+-.+.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~ 64 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALC 64 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHH
Confidence 466668999999999755443
No 293
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.53 E-value=0.22 Score=53.53 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=60.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc--cCC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ--HFD 243 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~--~~~ 243 (1387)
..++.+.|.|+.||||||.+ ..+........+.|.+- - ..+... ...+.. .++|........ +-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~-g-~~~~~~-~~~~~~---------~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLL-QLLTGDLKPQQGEITLD-G-VPVSDL-EKALSS---------LISVLNQRPYLFDTTLR 92 (178)
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEEC-C-EEHHHH-HHHHHh---------hEEEEccCCeeecccHH
Confidence 36788888999999999854 33433322334566542 1 111111 111111 122221100000 000
Q ss_pred Cc-EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 244 SK-VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 244 ~~-Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
-. +.-.+.|...+.......+.+-+++++||.= ..+|......+...+.....+.-+|+
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~ 152 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIW 152 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 00 1123334433333333346677999999998 78887776666666655433433333
No 294
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.69 Score=52.88 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=33.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHH
Q 000621 160 DILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQ 215 (1387)
Q Consensus 160 ~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~ 215 (1387)
.+...+..+..+++.|++|+|||..+..+..+.. ..+..|+++ ++.++..++..
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~Lk~ 150 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSKLKA 150 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHHH
Confidence 3444445777888899999999986555554443 334455543 55555555543
No 295
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.52 E-value=0.34 Score=59.11 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll 190 (1387)
..++|.||+|+|||+.+-..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5688899999999997655443
No 296
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.57 Score=56.42 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=39.6
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
..|.|-.--.+.+.+...+......++||||+| .++......+++.+..-+++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 345444333455555555667788999999999 345666777777776554455555554443
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.47 E-value=0.57 Score=50.04 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEEeecccCCHH
Q 000621 264 LSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATADAH 311 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiIlmSATl~~~ 311 (1387)
-.++++||||...-...+.+.+..+ ..+.. ..++--++.++|+...+
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l-~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEEL-KKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHH-HHHHhhcCCCeEEEEEECCCChH
Confidence 3467899999999333333343333 33332 23566677777765443
No 298
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=0.62 Score=60.13 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=30.9
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
+...+...|...++.++|||||| + +..+....+++.+..-++...+|+.
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~-~-LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVH-M-LSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChh-h-CCHHHHHHHHHHhhcCCCceEEEEE
Confidence 44455555677899999999999 3 3445556666666554334444443
No 299
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.28 E-value=0.13 Score=60.52 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEeccHHHH
Q 000621 156 MYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQPRKIA 209 (1387)
Q Consensus 156 ~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~P~r~L 209 (1387)
.|...+..++..+.+++|+|+|||||||.+-. |+.... ....+++++..+.|+
T Consensus 132 ~~~~~L~~~v~~~~nilI~G~tGSGKTTll~a-L~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 132 AQASVIRSAIDSRLNIVISGGTGSGKTTLANA-VIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHHhcCCCCceEEEecCCccc
Confidence 45666777888888999999999999997533 333221 234578888777775
No 300
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.26 E-value=0.29 Score=59.81 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHHHHc
Q 000621 155 YMYRQDILRRIYG-EQILVLIGETGCGKSTQLVQFLADS 192 (1387)
Q Consensus 155 ~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~~~ll~~ 192 (1387)
+.+...+..++.. +..++++|||||||||.+-.++...
T Consensus 244 ~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 244 PFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4455666666654 5789999999999999866655443
No 301
>PRK06921 hypothetical protein; Provisional
Probab=93.18 E-value=0.43 Score=54.95 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=23.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccC-CCeEEEec
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAA-EQSIVCTQ 204 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~-~~~Ilv~~ 204 (1387)
....+++.|+||+|||..+..++.+. ... +..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEE
Confidence 35678889999999998654433322 222 44566553
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.16 E-value=0.4 Score=59.64 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.8
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 000621 170 ILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~l 189 (1387)
.+++.||+|+||||.+-.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999765443
No 303
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.13 E-value=0.51 Score=65.65 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHH---HHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 154 IYMYRQDILRRIYG-EQILVLIGETGCGKSTQLV---QFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~---~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
...|+.++..++.+ +++++|+|..|+||||.+- ..+.......+..|+.+.||--+|..+.+ . ++. ..+
T Consensus 837 t~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e----~--Gi~-A~T 909 (1623)
T PRK14712 837 TSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS----A--GVD-AQT 909 (1623)
T ss_pred CHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH----h--Cch-Hhh
Confidence 55788888877764 6799999999999999742 22211111224578889999887766642 1 111 011
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHH-----hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQH-----FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~-----l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
-..|+.. ...+......++||||||= |++......+++.+. ..+.++|++
T Consensus 910 ---------------------IasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvVLV 964 (1623)
T PRK14712 910 ---------------------LASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAVAS 964 (1623)
T ss_pred ---------------------HHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEEEE
Confidence 1111110 0011122345899999997 666655555555443 235688888
Q ss_pred ccc
Q 000621 305 SAT 307 (1387)
Q Consensus 305 SAT 307 (1387)
-=+
T Consensus 965 GD~ 967 (1623)
T PRK14712 965 GDT 967 (1623)
T ss_pred cch
Confidence 766
No 304
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.12 E-value=0.58 Score=57.34 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=64.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCe--EEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQS--IVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~--Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..+++++|++|+||||.+..++.......+.+ ++-.=++|..|....++++...+ . .+ +.... .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-v----p~--~~~~~---~---- 164 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG-V----PV--FALGK---G---- 164 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC-C----ce--EecCC---C----
Confidence 35888999999999998666554321111233 34456677776655555544321 1 11 11000 0
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccCccEEeecccCC
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDLRLVIMSATAD 309 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~kiIlmSATl~ 309 (1387)
..|..+...........++++||||=+- |....+.+...+..+.. ..++--+++++||..
T Consensus 165 ---~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 165 ---QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 1122222211111123568999999998 66543444444444333 335555677788753
No 305
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=93.12 E-value=0.5 Score=50.66 Aligned_cols=124 Identities=18% Similarity=0.265 Sum_probs=86.1
Q ss_pred EEechhhHHHHHHHHHHHHHhccccCceEEEeeeCCCCcEEEEE--eeccchhHHHhhHhHHHhhcceEee---------
Q 000621 1186 LSCPASVYSVIKEELNSLLATLNRVNGAECVVERNYNGSYRVRI--SSNATKTVADLRRPVEELMRGRTVN--------- 1254 (1387)
Q Consensus 1186 ~~v~~~vy~~v~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~vki--~g~~~~~va~~k~~le~il~G~~i~--------- 1254 (1387)
+.||+.-..+|-+..-+..+.+..+-++.....++ .+. |.| .+.+...+..|+.-++.|..|....
T Consensus 2 i~Ip~~kig~vIG~gG~~Ik~I~~~tgv~I~Id~~-~g~--V~I~~~t~d~~~i~kA~~~I~~i~~gf~~e~A~~l~gd~ 78 (172)
T TIGR03665 2 VKIPKDRIGVLIGKGGETKKEIEERTGVKLDIDSE-TGE--VKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALKLLDDD 78 (172)
T ss_pred ccCCHHHhhhHhCCchhHHHHHHHHhCcEEEEEcC-Cce--EEEecCCCCHHHHHHHHHHHHHHHcCCCHHHHHHhcCCc
Confidence 56788888888544333434443334777777764 244 666 7888899999999999999974333
Q ss_pred -------cCC--CCcccc----ccccChhhHHHHHhhhccceEEEEEecccceEEEcCCHhhHHHHHHHHHHHH
Q 000621 1255 -------HAS--LTPTIL----QHLFTRDGINLRKSLQQETRTFILFDRHTLSVKIFGAPDNIAEAQQKLIQSL 1315 (1387)
Q Consensus 1255 -------~~~--~~~~~~----~~~~~~~g~~~l~~ie~~~~v~i~~d~~~~~~rifG~~~~~~~a~~~i~~~l 1315 (1387)
..+ .++..+ .. +-+.|-+-++.||..+|+.|..+. ..+.|-|..++++.|++.|..++
T Consensus 79 y~~~Vi~I~~~~~~~~~~~~~~gr-iIG~~G~t~~~ie~~t~~~i~i~~--~~v~i~G~~~~~~~A~~~i~~li 149 (172)
T TIGR03665 79 YMLEVIDLKEYGKSPNALRRIKGR-IIGEGGKTRRIIEELTGVSISVYG--KTVGIIGDPEQVQIAREAIEMLI 149 (172)
T ss_pred ceEEEEEhhhccCCHHHHHHHHhh-hcCCCcHHHHHHHHHHCCeEEEcC--CEEEEECCHHHHHHHHHHHHHHH
Confidence 111 111100 11 223444678999999999999986 78999999999999999997764
No 306
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.4 Score=55.83 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=60.7
Q ss_pred cCCCcHHHHHHHHHHHh--------cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHh
Q 000621 150 DGLPIYMYRQDILRRIY--------GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREES 221 (1387)
Q Consensus 150 ~~lP~~~q~~~i~~~l~--------~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~ 221 (1387)
....+...++.|++-|. .+.+++++||+|.|||... . ++|+.+.+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg-k------------------------SIA~al~Rkf 378 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG-K------------------------SIAKALGRKF 378 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH-H------------------------HHHHHhCCCE
Confidence 45667778888888773 3579999999999999632 1 2222222211
Q ss_pred cCCCCCccEEEecCCCcc-ccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCcccc--ccchhHHHHHHHHH
Q 000621 222 RGCYEDDSVICYPSFSSA-QHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHER--SLNTDLLLALVKDL 292 (1387)
Q Consensus 222 ~~~~~~~~vg~~~~~~~~-~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer--~~~~d~l~~~lk~l 292 (1387)
+..++|+. +.+.. ....---+=+-||++.+-+......+ -++++||+|.. +...|-.-+++..+
T Consensus 379 ----vR~sLGGv-rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N--Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 379 ----VRISLGGV-RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN--PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ----EEEecCcc-ccHHHhccccccccccCChHHHHHHHHhCCcC--CeEEeechhhccCCCCCChHHHHHhhc
Confidence 01112211 11111 11111122346999998886654333 47999999942 33445555555443
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.96 E-value=0.47 Score=49.24 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=54.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCc
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSK 245 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 245 (1387)
..++++.|.|+.||||||.+ ..+........+.|.+-- + ..++|...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~~--~--------------------~~i~~~~~---------- 70 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVTWGS--T--------------------VKIGYFEQ---------- 70 (144)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEECC--e--------------------EEEEEEcc----------
Confidence 36788888999999999843 334332222234444311 0 12333211
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhc
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCR 295 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~ 295 (1387)
.+.|...+.........+-+++++||.- ..+|.+....+...+...
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 4455544333333346677899999998 788877766666655444
No 308
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.87 E-value=0.35 Score=51.31 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
+...+...+.-..++++|||||| .+..+...+++|.+..-+.+..+|++|-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 44444455556789999999999 456677788888887766677777666543
No 309
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.73 E-value=0.6 Score=57.24 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEec
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQ 204 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~ 204 (1387)
+.+++.|++|+|||..+-. +..... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~a-i~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHA-IGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHHHhCCCCcEEEEE
Confidence 4577899999999985433 322211 1234666653
No 310
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.62 E-value=0.39 Score=60.67 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+...+...+...+.+++|||||| ++ ..+....+++.+..-++...+|+++
T Consensus 107 Ii~~~~~~P~~~~~KVIIIDEad-~L-t~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAH-ML-STSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHhchhhCCcEEEEEechH-hC-CHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 33444445566778999999999 33 3344455566555444444444443
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.61 E-value=0.71 Score=53.17 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=33.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
+..+.+++|.|+||+|||+.+.+++.......+..++++. .-....+++.++..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-LEEPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-cccCHHHHHHHHHH
Confidence 3467899999999999999888877654333245666542 11223344455443
No 312
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.57 E-value=0.47 Score=55.74 Aligned_cols=53 Identities=9% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCceeEEEEcCccccccchhHHH-HHHHHHHhcc-cCccEEeecccCCHHHHHHHh
Q 000621 264 LSRISCIIVDEAHERSLNTDLLL-ALVKDLLCRR-FDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~-~~lk~l~~~~-~~~kiIlmSATl~~~~~~~~f 317 (1387)
+.+++++||||..--.. +++.. .++..+...| .+.+-.++|.-++.+.+.+.|
T Consensus 215 l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred hcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 56889999999983333 33333 4555444333 233445566666777777766
No 313
>PLN03025 replication factor C subunit; Provisional
Probab=92.56 E-value=0.84 Score=54.06 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~l 189 (1387)
..+++.||+|+|||+.+-.++
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 467889999999999765444
No 314
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.28 Score=62.74 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+...+...+...+++++||||+| ++..+....+++.+..-+++..+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 34444445677889999999999 344445566666666544555555543
No 315
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=2 Score=54.29 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=70.4
Q ss_pred cCCccccccHHHHHHHHH----hccCCCcHHHHHHHHHHHh--------cCCeEEEEcCCCCcHHHHHHHHHHHccccCC
Q 000621 130 QRFDWSRIQAFIVRECKR----LEDGLPIYMYRQDILRRIY--------GEQILVLIGETGCGKSTQLVQFLADSGIAAE 197 (1387)
Q Consensus 130 g~~~~~~l~~~ll~~l~~----~~~~lP~~~q~~~i~~~l~--------~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~ 197 (1387)
...||.+.+.+-+.-..+ -.........++.|++.|. ++.+++++||+|-|||...-
T Consensus 388 t~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~k----------- 456 (906)
T KOG2004|consen 388 TSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAK----------- 456 (906)
T ss_pred HhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHH-----------
Confidence 346776665543322211 1234556778888888874 46799999999999996422
Q ss_pred CeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccc
Q 000621 198 QSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHE 277 (1387)
Q Consensus 198 ~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHe 277 (1387)
++|+.+.+++-. .++|+...........---+=+-||++.+-|..-..-+ -++.|||+|.
T Consensus 457 --------------SIA~ALnRkFfR----fSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~N--PliLiDEvDK 516 (906)
T KOG2004|consen 457 --------------SIARALNRKFFR----FSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTEN--PLILIDEVDK 516 (906)
T ss_pred --------------HHHHHhCCceEE----EeccccccHHhhcccceeeeccCChHHHHHHHhhCCCC--ceEEeehhhh
Confidence 222222222110 12222211111111111233356999998886544222 4799999994
Q ss_pred --cccchhHHHHHHHHH
Q 000621 278 --RSLNTDLLLALVKDL 292 (1387)
Q Consensus 278 --r~~~~d~l~~~lk~l 292 (1387)
+....|-.-+++..+
T Consensus 517 lG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 517 LGSGHQGDPASALLELL 533 (906)
T ss_pred hCCCCCCChHHHHHHhc
Confidence 334455555554433
No 316
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.49 E-value=0.14 Score=59.10 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=32.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCC-CeEEEeccHHH
Q 000621 160 DILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAE-QSIVCTQPRKI 208 (1387)
Q Consensus 160 ~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~-~~Ilv~~P~r~ 208 (1387)
.+...++.+.+++|+|+|||||||.+-.++ +. .... .+++++....+
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all-~~-i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALL-EE-IPPEDERIVTIEDPPE 166 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHH-HH-CHTTTSEEEEEESSS-
T ss_pred HHhhccccceEEEEECCCccccchHHHHHh-hh-ccccccceEEeccccc
Confidence 344445678999999999999999875554 33 2233 67887765544
No 317
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.44 E-value=0.58 Score=57.21 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=71.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHcccc--CCCeEEEeccHHH-HHHHHHHHHHHHhcCCCCCccEEEecCC-Cccc-cCC
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIA--AEQSIVCTQPRKI-AAISLAQRVREESRGCYEDDSVICYPSF-SSAQ-HFD 243 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~--~~~~Ilv~~P~r~-LA~qla~rv~~~~~~~~~~~~vg~~~~~-~~~~-~~~ 243 (1387)
+..++.|..|||||..+...++..... .+.+++|+-|+.- +...+...+...+............... .-.. ..+
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 456789999999998755555443333 5678999888776 6666777776654322111111100000 0000 113
Q ss_pred CcEEEECh-hHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCH
Q 000621 244 SKVIYMTD-HCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADA 310 (1387)
Q Consensus 244 ~~Ivv~Tp-g~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~ 310 (1387)
..|+|..- +---+ + .....+..+.+|||.+. ..+....+...+.. ......+++|.|++.
T Consensus 82 ~~i~f~g~~d~~~~-i---k~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~-~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 82 KKFIFKGLNDKPNK-L---KSGAGIAIIWFEEASQL--TFEDIKELIPRLRE-TGGKKFIIFSSNPES 142 (396)
T ss_pred eEEEeecccCChhH-h---hCcceeeeehhhhhhhc--CHHHHHHHHHHhhc-cCCccEEEEEcCcCC
Confidence 44555432 11100 0 13344799999999954 33444444444322 122224788888753
No 318
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=0.3 Score=61.96 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=22.9
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC 294 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~ 294 (1387)
..+...+...+..+||||||| ++ ..+....+++.+..
T Consensus 109 ~~~~~~p~~g~~kVIIIDEad-~L-t~~a~naLLk~LEE 145 (624)
T PRK14959 109 EAIGYAPMEGRYKVFIIDEAH-ML-TREAFNALLKTLEE 145 (624)
T ss_pred HHHHhhhhcCCceEEEEEChH-hC-CHHHHHHHHHHhhc
Confidence 333334456778999999999 33 34444555665544
No 319
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.30 E-value=0.28 Score=52.39 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=61.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec-cHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc--cC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ-PRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ--HF 242 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~-P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~--~~ 242 (1387)
..++.+.|.||.||||||.+ ..+........+.|.+-- +..... ...+.. .+++........ +-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl-~~i~G~~~~~~G~i~~~g~~~~~~~---~~~~~~---------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLL-KLLLRLYDPTSGEILIDGVDLRDLD---LESLRK---------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhhhcC---HHHHHh---------hEEEEcCCchhccchH
Confidence 36788889999999999843 444333223345555421 111000 011111 122211110000 00
Q ss_pred CCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 243 DSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 243 ~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
.-.+ .+.|.--+.........+-+++++||-= ..+|......+.+.+.....+ ..++++
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 0001 4445433332222245567899999998 788887777666666555444 444544
No 320
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.30 E-value=0.52 Score=58.27 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEecc
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQP 205 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P 205 (1387)
+.+++.||+|+|||..+-.+. ......+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~-~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAV-HALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHH-HHHHHcCCCEEEeeH
Confidence 457779999999998543322 221222456777643
No 321
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.28 E-value=0.81 Score=49.63 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=29.3
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
.+.+...+......+|||||+| ++ ..+....+++.+...+++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~-~l-~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAE-RM-NEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechh-hh-CHHHHHHHHHHhcCCCCCeEEEEE
Confidence 4555566677889999999999 33 333444555555443334444443
No 322
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.26 E-value=0.22 Score=59.21 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHH
Q 000621 159 QDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIA 209 (1387)
Q Consensus 159 ~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~L 209 (1387)
.-+..++..+.+++|+|+|||||||.+-. ++.. .....+++.+..+.++
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~-i~~~~rivtiEd~~El 201 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKT-LISA-IPPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHH-HHcc-cCCCCCEEEECCCccc
Confidence 34555667889999999999999996544 3333 3445678888887665
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.25 E-value=0.65 Score=58.31 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=27.0
Q ss_pred hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 258 FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 258 l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
+...+.+.+..+|||||+| ++ ..+....+++.+....+...+|+
T Consensus 108 ~~~~p~~~~~kVVIIDEad-~l-s~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAH-MM-SKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HhhccccCCCeEEEEECcc-cc-CHHHHHHHHHHHHhCCCCEEEEE
Confidence 3344567788999999999 33 34445566666555444444443
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.21 Score=52.52 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=29.1
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR 296 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~ 296 (1387)
.+.|...+.........+..++++||.- ..+|......+.+.+....
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~ 127 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELA 127 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHH
Confidence 4445433332222234557899999999 7888877666666665443
No 325
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.18 E-value=0.25 Score=58.28 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHcc--ccCCCeEEEeccHHHH
Q 000621 155 YMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSG--IAAEQSIVCTQPRKIA 209 (1387)
Q Consensus 155 ~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~--~~~~~~Ilv~~P~r~L 209 (1387)
..+.+.+..++..+..++|+|+|||||||.+-.++ ... .....+++++..+.++
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~-~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAII-NEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH-HhhhhcCCCceEEEEcCCCcc
Confidence 34666677788899999999999999998654333 321 2334578877777654
No 326
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.16 E-value=0.88 Score=64.24 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHH--HHc-cccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 154 IYMYRQDILRRIYG-EQILVLIGETGCGKSTQLVQFL--ADS-GIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~~~l--l~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
...|+.++-.++.+ +.+++|+|..|+||||.+-..+ ++. ....+..|+.+.||--+|..+.+ . +.. .
T Consensus 969 t~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~--Gi~-A-- 1039 (1747)
T PRK13709 969 TSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----A--GVD-A-- 1039 (1747)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----c--Ccc-h--
Confidence 56688888887875 5799999999999999743322 221 11223468888999877765532 1 110 0
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHHhh-----cCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQHFM-----NDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~-----~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
.|-..|+.... .......-++|||||+= |+++.....+++.+.. .+.++|++
T Consensus 1040 -------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~garvVLV 1096 (1747)
T PRK13709 1040 -------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRAVSS 1096 (1747)
T ss_pred -------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCEEEEe
Confidence 11112211100 01112244899999997 7777666666655432 35688877
Q ss_pred ccc
Q 000621 305 SAT 307 (1387)
Q Consensus 305 SAT 307 (1387)
-=+
T Consensus 1097 GD~ 1099 (1747)
T PRK13709 1097 GDT 1099 (1747)
T ss_pred cch
Confidence 655
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=0.73 Score=58.26 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+......+...+++++||||+| ++ ..+....+++.+...++...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad-~l-s~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVH-ML-SKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCcc-cC-CHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3444445667788999999999 33 3344556777776655566666544
No 328
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.11 E-value=0.65 Score=54.05 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHH---HHHHHHccccCCCeEEEe
Q 000621 169 QILVLIGETGCGKSTQL---VQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i---~~~ll~~~~~~~~~Ilv~ 203 (1387)
-.+++.||+|+|||+.+ ...+...+....+.++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v 96 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe
Confidence 35777899999999864 344444433333344433
No 329
>PRK12377 putative replication protein; Provisional
Probab=92.10 E-value=1.9 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
+...+++.|++|+|||..+..+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHH
Confidence 34678889999999998544433
No 330
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.06 E-value=0.16 Score=51.18 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=14.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 000621 171 LVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~l 189 (1387)
+++.||+|+|||+.+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 4678999999999665444
No 331
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.94 E-value=1.1 Score=58.07 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ 188 (1387)
.++.|.|+||+|||+.+-..
T Consensus 782 nvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45668999999999875443
No 332
>PHA02533 17 large terminase protein; Provisional
Probab=91.86 E-value=1.9 Score=54.43 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=81.8
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH-HccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccE
Q 000621 152 LPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLA-DSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSV 230 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll-~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~v 230 (1387)
+++...|..++..+..++..++.-+=..|||+.+..+++ ......+..++++.|++.-|..+.+++.......+.....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 334455666666665555556677899999997654333 2223445689999999999999988887654322110001
Q ss_pred EEe--cCCCccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 231 ICY--PSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 231 g~~--~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
+.. ....-....++.|.+.|..- +-. .=.+++++++||+|...-..++...+.-.+ ......++++.|...
T Consensus 138 ~i~~~~~~~I~l~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai~p~l-asg~~~r~iiiSTp~ 210 (534)
T PHA02533 138 GIVEWNKGSIELENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAIQPVI-SSGRSSKIIITSTPN 210 (534)
T ss_pred ceeecCccEEEeCCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHHHHHH-HcCCCceEEEEECCC
Confidence 110 00000012345555554321 000 112457899999994221123333332222 222334566666554
Q ss_pred CHHHHHHHh
Q 000621 309 DAHQLSKYF 317 (1387)
Q Consensus 309 ~~~~~~~~f 317 (1387)
....+.+.+
T Consensus 211 G~n~fye~~ 219 (534)
T PHA02533 211 GLNHFYDIW 219 (534)
T ss_pred chhhHHHHH
Confidence 333344433
No 333
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.86 E-value=0.17 Score=56.81 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 000621 171 LVLIGETGCGKSTQLVQFLAD 191 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~ll~ 191 (1387)
++|.|+.|||||+.+...+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 367899999999987776644
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.82 E-value=0.33 Score=57.29 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+.+.....+......+||||||| .+..|...++++.+.....+..+++.+
T Consensus 97 ~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 97 LAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 33333334455789999999999 345566777777766655566665554
No 335
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=91.81 E-value=0.41 Score=64.63 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=87.7
Q ss_pred cEEEEeCCHHHHHHHHHHhcCCCCceEeccCCCCHhhhhhhhccC-C--CceEEEEecchhhcCCCCCCceEEEecCCCc
Q 000621 369 TILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-P--GRRKVIFATNVAETSLTIPGVKFVIDSGMVK 445 (1387)
Q Consensus 369 ~iLVF~~s~~eie~l~~~L~~~~~~v~~lh~~l~~~er~~v~~~f-~--g~~kVLVaT~iae~GIdIp~V~~VId~g~~k 445 (1387)
++|||.+-.....-+...+...++....++|+++.+.|...++.| . +..-.+++|-+++.|+|.-..+.||.++.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~-- 790 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP-- 790 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc--
Confidence 799999999999999999988888899999999999999999999 4 35677888889999999999999998765
Q ss_pred cccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccccc
Q 000621 446 ESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDF 492 (1387)
Q Consensus 446 ~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~ 492 (1387)
.+|| .-..++..|+-|.|+..+=..|++.++...
T Consensus 791 --~wnp-----------~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 791 --WWNP-----------AVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred --ccCh-----------HHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 3333 112445555666666667788998888754
No 336
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.47 Score=58.00 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
...+...|.+.+..++||||+| ++-. .-...+++.+...++...+|+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~-~l~~-~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVH-MLSI-AAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChh-hCCH-HHHHHHHHHHhcCCCCeEEEE
Confidence 3445555778899999999999 4432 233344555443333333333
No 337
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.74 E-value=0.52 Score=59.14 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 261 DRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 261 ~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
.+...++.++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 4567789999999999 344556667777776665566666554
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.70 E-value=0.79 Score=49.39 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=61.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
+..+.++.|.||.||||||.+ ..+........+.|.+-- ..+++.....
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g-----------------------~~i~~~~q~~------- 70 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAV-KILAGQLIPNGDNDEWDG-----------------------ITPVYKPQYI------- 70 (177)
T ss_pred ECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCcEEEECC-----------------------EEEEEEcccC-------
Confidence 457788989999999999954 334333223345554411 0122211100
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCc-cEEeecccCCHHHHHHH
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDL-RLVIMSATADAHQLSKY 316 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~-kiIlmSATl~~~~~~~~ 316 (1387)
. .+-|.-.+.......+.+-+++++||-- ..+|......+...+......- ..+++ +|-+.+.+..+
T Consensus 71 ~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~~~tiii-vsH~~~~~~~~ 138 (177)
T cd03222 71 D---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEEGKKTALV-VEHDLAVLDYL 138 (177)
T ss_pred C---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHcCCCEEEE-EECCHHHHHHh
Confidence 0 3444432222222235566899999998 7888776666665555433222 33444 34344444433
No 339
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.66 E-value=0.76 Score=56.96 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHcc--ccCCCeEEEeccHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSG--IAAEQSIVCTQPRKIAAISLA 214 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~--~~~~~~Ilv~~P~r~LA~qla 214 (1387)
+-++|.|++|+|||..+ +.+.... ...+.+++++.+ ..+...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHH
Confidence 45777999999999754 3333311 123456776544 33433333
No 340
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=91.64 E-value=0.61 Score=41.53 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=46.2
Q ss_pred EEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHHh-hhcCceecCceeE
Q 000621 914 VDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKAT-ELNGVEYNGSLLK 987 (1387)
Q Consensus 914 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~~-~~~~~~~~~~~l~ 987 (1387)
|.|.|.|.+ +++.++..++... |.|.++....+.+ ....+.|.|.|.+++.|++++ ..++..|+|+.|+
T Consensus 1 v~i~nlp~~-~~~~~l~~~f~~~--g~v~~v~~~~~~~--~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPS-TTEEDLRNFFSRF--GPVEKVRLIKNKD--GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT---HHHHHHHCTTS--SBEEEEEEEESTT--SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCC-CCHHHHHHHHHhc--CCcceEEEEeeec--cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 467877776 4456676776543 6677777663222 223455799999999999995 4445899988774
No 341
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.62 E-value=0.73 Score=66.60 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHH---HHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCcc
Q 000621 154 IYMYRQDILRRIYG-EQILVLIGETGCGKSTQLV---QFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDS 229 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~---~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~ 229 (1387)
...|+.++-.++.+ +.+++|+|..|+||||.+- ..+.+.....+..|+.+.||-.+|..+.+ . +.. ..
T Consensus 1021 t~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~----~--g~~-a~- 1092 (1960)
T TIGR02760 1021 THGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS----A--GVQ-AQ- 1092 (1960)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh----c--CCc-hH-
Confidence 56777777777765 5688999999999999762 23333222235578889999887766642 1 111 00
Q ss_pred EEEecCCCccccCCCcEEEEChhHHHHH---hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 230 VICYPSFSSAQHFDSKVIYMTDHCLLQH---FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 230 vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~---l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
|-..|+.. ....+.+...+++||||+= |+++..+..+++.+. ..+.++|++-=
T Consensus 1093 --------------------Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlvGD 1148 (1960)
T TIGR02760 1093 --------------------TLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSLGD 1148 (1960)
T ss_pred --------------------hHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEeCC
Confidence 11111110 0111234456899999997 677665555555442 23467776654
Q ss_pred c
Q 000621 307 T 307 (1387)
Q Consensus 307 T 307 (1387)
+
T Consensus 1149 ~ 1149 (1960)
T TIGR02760 1149 I 1149 (1960)
T ss_pred h
Confidence 4
No 342
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=91.55 E-value=3.1 Score=49.76 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeE
Q 000621 909 RRFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLK 987 (1387)
Q Consensus 909 ~df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~ 987 (1387)
..-+++.|.+.+.. +++.++..+|+. -|.|.+|...... .......-|.|+|.|++.|.+| .++++..+.+..|+
T Consensus 105 ~~~~~LfVgnLp~~-~te~~L~~lF~~--~G~V~~v~i~~d~-~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 105 NSGTNLIVNYLPQD-MTDRELYALFRT--IGPINTCRIMRDY-KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHh--cCCEEEEEEEecC-CCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 35578888876655 456677777744 3555666554100 1111224479999999999999 68999999999999
Q ss_pred EEeecc--------cc--CCCC-------------CcCCCCeEEEEEEeeccCCccEEEEEcCCchhHHHHHhhhh-ccc
Q 000621 988 VVPSRA--------TL--GGDN-------------KMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVEFLVKDFFD-LAI 1043 (1387)
Q Consensus 988 v~~~~~--------~~--~g~~-------------~~~~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a~~v~~~~~-~~i 1043 (1387)
|..... .+ ++-. ....+..+++........++++|+|.|.+.+.|...-..++ ..+
T Consensus 181 V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 181 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred eecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 863210 00 1110 00112222332222234566899999999888855544444 444
Q ss_pred CC--eeEEEecC
Q 000621 1044 GG--RYVRCEIG 1053 (1387)
Q Consensus 1044 ~~--~~v~~~~~ 1053 (1387)
.+ +.+++.+.
T Consensus 261 ~g~~~~l~V~~a 272 (346)
T TIGR01659 261 EGGSQPLTVRLA 272 (346)
T ss_pred CCCceeEEEEEC
Confidence 33 56766433
No 343
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.43 E-value=0.32 Score=52.12 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=56.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc--cCC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ--HFD 243 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~--~~~ 243 (1387)
..++.+.|.||.||||||.+ ..+........+.|.+-- . .+...-...+.. .+++........ +-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g-~-~~~~~~~~~~~~---------~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLA-RLILGLLRPTSGRVRLDG-A-DISQWDPNELGD---------HVGYLPQDDELFSGSIA 93 (173)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECC-E-EcccCCHHHHHh---------heEEECCCCccccCcHH
Confidence 36788888999999999943 344333223345554411 0 000000001111 122211100000 000
Q ss_pred CcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhc
Q 000621 244 SKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCR 295 (1387)
Q Consensus 244 ~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~ 295 (1387)
-.+ .+.|...+.......+.+.+++++||.= ..+|......+...+...
T Consensus 94 ~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAAL 142 (173)
T ss_pred HHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHH
Confidence 011 4455444333333356677999999998 788877666666655544
No 344
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.42 E-value=1.4 Score=53.30 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCccccccHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 000621 131 RFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 131 ~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll 190 (1387)
.||+..+.+...+-+. ++-.+|..+...++..|+|+|||..++..+.
T Consensus 11 ~FPY~~iYPEQ~~YM~-------------elKrsLDakGh~llEMPSGTGKTvsLLSli~ 57 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMR-------------ELKRSLDAKGHCLLEMPSGTGKTVSLLSLII 57 (755)
T ss_pred ecCCcccCHHHHHHHH-------------HHHHhhccCCcEEEECCCCCCcchHHHHHHH
Confidence 3666678887766444 5566777888888899999999987555443
No 345
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.39 E-value=1.2 Score=54.02 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
+.+.+...+...+.+++||||+| ++ +......+++.+.. +++-.++++.||-
T Consensus 105 l~~~~~~~p~~~~~kViiIDead-~m-~~~aanaLLk~LEe-p~~~~~fIL~a~~ 156 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDAD-RL-TERAANALLKAVEE-PPPRTVWLLCAPS 156 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechh-hc-CHHHHHHHHHHhhc-CCCCCeEEEEECC
Confidence 34444445566788999999999 44 33344556666544 3444455555554
No 346
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=91.32 E-value=0.42 Score=42.20 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=46.0
Q ss_pred EEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCccc
Q 000621 1060 VVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDA 1139 (1387)
Q Consensus 1060 i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~ 1139 (1387)
|.+.|||..+|++||.+++.... . ...+.+... ..+..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g-~---------------------------------------i~~~~~~~~--~~~~~ 38 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG-K---------------------------------------IESIKVMRN--SSGKS 38 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS-T---------------------------------------EEEEEEEEE--TTSSE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh-h---------------------------------------ccccccccc--ccccc
Confidence 46889999999999998886522 1 222333332 22246
Q ss_pred ceeEEEEe-cccchHHHHHHHHHhcCCccCC
Q 000621 1140 FMKAFITF-DGRLHLEAAKALEQLEGKVLPG 1169 (1387)
Q Consensus 1140 ~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~ 1169 (1387)
..-|+|.| +..+ |.+|++.++|..+-+
T Consensus 39 ~~~a~V~F~~~~~---a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 39 KGYAFVEFESEED---AEKALEELNGKKING 66 (70)
T ss_dssp EEEEEEEESSHHH---HHHHHHHHTTEEETT
T ss_pred cceEEEEEcCHHH---HHHHHHHcCCCEECc
Confidence 77899999 5556 999999999987765
No 347
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.31 E-value=2.8 Score=53.12 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHH-ccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecC
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLAD-SGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPS 235 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~-~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~ 235 (1387)
..+++++..+++-.++ ..|==.|||+.+...+.- .....+.+|+++.|.+-.+..+.+++...+........+... .
T Consensus 244 ~s~~~~~~fkqk~tVf-lVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v-k 321 (738)
T PHA03368 244 FSDAAVRHFRQRATVF-LVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV-K 321 (738)
T ss_pred ccHHHHHHhhccceEE-EecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee-c
Confidence 5667777777666666 469999999965432221 112246799999999999999999998865322111111110 0
Q ss_pred CCcc-----ccCCCcEEEEChhHHHHHhhcCC--CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 236 FSSA-----QHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 236 ~~~~-----~~~~~~Ivv~Tpg~Ll~~l~~~~--~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
.+.. ......|.|.+. .++. .=..++++|||||+. +..+.+..++-.+... +.++|.+|.|-
T Consensus 322 Ge~I~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~N 390 (738)
T PHA03368 322 GETISFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTN 390 (738)
T ss_pred CcEEEEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCC
Confidence 0100 011135666532 1111 123689999999994 5556666666443333 78999999996
Q ss_pred CHHHHHHHhc
Q 000621 309 DAHQLSKYFY 318 (1387)
Q Consensus 309 ~~~~~~~~f~ 318 (1387)
..+.-..|+.
T Consensus 391 s~~~sTSFL~ 400 (738)
T PHA03368 391 TGKASTSFLY 400 (738)
T ss_pred CCccchHHHH
Confidence 6544444443
No 348
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.30 E-value=0.84 Score=49.21 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=28.9
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR 296 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~ 296 (1387)
.+.|.-.+.......+.+-+++++||.= ..+|.+....+.+.+....
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLA 144 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHH
Confidence 3445433332222245567899999998 7888777666666555443
No 349
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.22 E-value=1.4 Score=52.81 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=28.6
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
+...+...+...+..+||||||| .+ ..+....+++.+...+++..+|+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~-~l-~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVH-ML-SKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChh-hc-CHHHHHHHHHHHhCCccceeEEE
Confidence 45555556677888999999999 33 33344455565543333343333
No 350
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.19 E-value=1.4 Score=56.69 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
..+...+.+.+..+|||||+| + +..+....+++.+..-.+...+|+
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~-~-L~~~a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVH-M-LSTAAFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred HHHhhCcccCCeEEEEEeChH-h-CCHHHHHHHHHHHhcCCCCeEEEE
Confidence 334445567889999999999 3 334445555665544433333333
No 351
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.15 E-value=0.72 Score=49.63 Aligned_cols=130 Identities=14% Similarity=0.056 Sum_probs=64.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec-cHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc---c
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ-PRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ---H 241 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~-P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~---~ 241 (1387)
..++++.|.||.||||||.+ ..+........+.|.+-- +..... +-...... .+++........ +
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~---------~i~~~~q~~~~~~~~t 92 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLL-RCIAGLEEPDSGSILIDGEDLTDLE-DELPPLRR---------RIGMVFQDFALFPHLT 92 (178)
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccc-hhHHHHhh---------cEEEEecCCccCCCCC
Confidence 36788888999999999954 334332222345555421 100000 00011111 222221110000 0
Q ss_pred CCCcEEE-EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccC-ccEEeeccc
Q 000621 242 FDSKVIY-MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFD-LRLVIMSAT 307 (1387)
Q Consensus 242 ~~~~Ivv-~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~-~kiIlmSAT 307 (1387)
-.-.+.+ .+.|...+.......+.+-.++|+||-- ..+|.+....+.+.+.....+ -+.++++..
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 0112222 5666544443333346677999999999 788887777666666554332 234444433
No 352
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.14 E-value=0.61 Score=59.38 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhc
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCR 295 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~ 295 (1387)
+...+...|...++.++||||+| + +..+....+++.+..-
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~-~-Lt~~a~naLLKtLEep 146 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVH-M-LSTGAFNALLKTLEEP 146 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECcc-c-CCHHHHHHHHHHhcCC
Confidence 33444445677889999999999 3 3444555666665443
No 353
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.11 E-value=0.48 Score=51.40 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccH
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPR 206 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~ 206 (1387)
+.+-+...+..+.+++|+|||||||||.+-. ++... ....+++.+.-.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~~i-~~~~~~i~ied~ 61 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNA-LLAFI-PPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhc-CCCCCEEEECCc
Confidence 4455556677889999999999999996533 33332 233455554433
No 354
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.10 E-value=0.28 Score=58.18 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHH
Q 000621 159 QDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIA 209 (1387)
Q Consensus 159 ~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~L 209 (1387)
.-+..++..+.+++|+|+|||||||.+-. ++.. .....+|+.+.-+.|+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~a-L~~~-ip~~~ri~tiEd~~El 199 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNA-ALRE-IPAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHH-HHhh-CCCCCeEEEecCCCcc
Confidence 34455667889999999999999997643 3333 3445678777666554
No 355
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.08 E-value=0.62 Score=57.13 Aligned_cols=75 Identities=28% Similarity=0.270 Sum_probs=44.5
Q ss_pred CCCcEEEEChhHHHHHhhcCC-------CCCceeE-EEEcCccccccch-----h------HHHHHHHHHHhcccCccEE
Q 000621 242 FDSKVIYMTDHCLLQHFMNDR-------DLSRISC-IIVDEAHERSLNT-----D------LLLALVKDLLCRRFDLRLV 302 (1387)
Q Consensus 242 ~~~~Ivv~Tpg~Ll~~l~~~~-------~l~~l~~-IIIDEaHer~~~~-----d------~l~~~lk~l~~~~~~~kiI 302 (1387)
..-.|.|+|.+.|...+.+.. .+.+..+ .+-||||.-...+ | -+...+.......++--++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 456899999998887665443 4555554 4569999422111 1 1122233334455677788
Q ss_pred eecccCCH--HHHHHH
Q 000621 303 IMSATADA--HQLSKY 316 (1387)
Q Consensus 303 lmSATl~~--~~~~~~ 316 (1387)
.+|||.+. ...++|
T Consensus 160 ef~at~~k~k~v~~ky 175 (812)
T COG3421 160 EFSATIPKEKSVEDKY 175 (812)
T ss_pred hhhhcCCccccHHHHh
Confidence 89999763 334455
No 356
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.03 E-value=0.8 Score=55.20 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~l 189 (1387)
..++|.||+|+|||+.+-.++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578889999999998754443
No 357
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=91.03 E-value=1.2 Score=49.56 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=80.4
Q ss_pred CeEEEEEEeeccCCccEEEEEcCCchhH-HHHHhhhhcccCCeeEEEecCccccCcEEEcCCCcccCHHHHHhhhhcccc
Q 000621 1005 PAVKAKVYWPRRLSKGFAVVKCDATDVE-FLVKDFFDLAIGGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKVTT 1083 (1387)
Q Consensus 1005 ~~~~v~~sW~r~~~~~~~~l~f~~~~~a-~~v~~~~~~~i~~~~v~~~~~~~~~~~i~l~~l~~~~~~~di~~~~~~~~~ 1083 (1387)
.-.||-=.=+.--++||+.|.|.+.+-| ..+.++...-+|+|.||..|.++.++. . |=.+ .|=+||..---+...
T Consensus 90 S~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e--~-n~~~-ltfdeV~NQssp~Nt 165 (321)
T KOG0148|consen 90 SDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSE--M-NGKP-LTFDEVYNQSSPDNT 165 (321)
T ss_pred ccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccc--c-CCCC-ccHHHHhccCCCCCc
Confidence 3333333444555899999999766555 788888889999999999999886511 0 1111 333344333222111
Q ss_pred ccccceeeeecccCCCCChhHHHHHHHHh-hcccCcCCCCCCceeEEEecCCCCcccceeEEEEecccchHHHHHHHHHh
Q 000621 1084 RRIRDLFLVRGDAVECPQFDAFEEALLRE-ISRFMPKRNSHANCCRVQVFPPEPKDAFMKAFITFDGRLHLEAAKALEQL 1162 (1387)
Q Consensus 1084 ~~~~~~~~~r~~~~~~~~~~~~~e~l~~~-i~~~~~~~~~~~~~~~v~~~~~~~~d~~~kA~~~Fd~~~~~~a~~al~~l 1162 (1387)
- +|= +..+- .+-|.++++ .+| .+++. +|+||+.. --|+|+|+...+ |++|..++
T Consensus 166 ----s---VY~---G~I~~-~lte~~mr~~Fs~-----fG~I~--EVRvFk~q-----GYaFVrF~tkEa--AahAIv~m 220 (321)
T KOG0148|consen 166 ----S---VYV---GNIAS-GLTEDLMRQTFSP-----FGPIQ--EVRVFKDQ-----GYAFVRFETKEA--AAHAIVQM 220 (321)
T ss_pred ----e---EEe---CCcCc-cccHHHHHHhccc-----CCcce--EEEEeccc-----ceEEEEecchhh--HHHHHHHh
Confidence 1 111 11111 123334433 334 23333 67777653 358999977644 99999999
Q ss_pred cCCccCC
Q 000621 1163 EGKVLPG 1169 (1387)
Q Consensus 1163 ~g~~lp~ 1169 (1387)
||+.+-+
T Consensus 221 Nntei~G 227 (321)
T KOG0148|consen 221 NNTEIGG 227 (321)
T ss_pred cCceeCc
Confidence 9999876
No 358
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.96 E-value=0.29 Score=53.72 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
..++|+|||||||||.+-.++.......++.|+.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 467889999999999764433322212234566543
No 359
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=90.95 E-value=0.37 Score=53.28 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~ 187 (1387)
+.+++.||+|+||||.+-.
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 5788899999999985543
No 360
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.92 E-value=0.89 Score=53.89 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=22.6
Q ss_pred eeEEEEcCccccccc--hhHHHHHHHHHHhcccCccEEeecccC
Q 000621 267 ISCIIVDEAHERSLN--TDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 267 l~~IIIDEaHer~~~--~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
=.+++|||+| |.-. .|+++-.+ .+-.+++.-||-
T Consensus 105 ~tiLflDEIH-RfnK~QQD~lLp~v-------E~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIH-RFNKAQQDALLPHV-------ENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhh-hcChhhhhhhhhhh-------cCCeEEEEeccC
Confidence 3689999999 5533 25544443 345788888884
No 361
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=90.90 E-value=0.83 Score=40.26 Aligned_cols=69 Identities=29% Similarity=0.395 Sum_probs=49.2
Q ss_pred EEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeE
Q 000621 914 VDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLK 987 (1387)
Q Consensus 914 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~ 987 (1387)
|.|.|.+.+.. +.++..++. -.|.+..+.... ........+|.|+|++++.|++| ..+++..++|..|+
T Consensus 1 l~v~nlp~~~t-~~~l~~~f~--~~g~i~~~~~~~--~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVT-EEELRDFFS--QFGKIESIKVMR--NSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSS-HHHHHHHHH--TTSTEEEEEEEE--ETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCC-HHHHHHHHH--Hhhhcccccccc--cccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 45676555554 566666664 356666766552 13445677789999999999999 56999999988774
No 362
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=90.87 E-value=1.1 Score=59.15 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHh--------cCCeEEEEcCCCCcHHHHHH
Q 000621 151 GLPIYMYRQDILRRIY--------GEQILVLIGETGCGKSTQLV 186 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~--------~~~vviI~a~TGSGKTt~i~ 186 (1387)
..-....++.|++.+. ....+++.||+|+|||+.+-
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHH
Confidence 3445666777765553 24678889999999998543
No 363
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.86 E-value=1 Score=57.78 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHH
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQ 184 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~ 184 (1387)
....++..|...+..++..|||+|||+.
T Consensus 29 ~M~rvl~~L~~~q~~llESPTGTGKSLs 56 (945)
T KOG1132|consen 29 FMTRVLSCLDRKQNGLLESPTGTGKSLS 56 (945)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCccHH
Confidence 3456777788888888899999999986
No 364
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.81 E-value=6 Score=53.21 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHccccCCCeEE
Q 000621 170 ILVLIGETGCGKSTQLVQFLADSGIAAEQSIV 201 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Il 201 (1387)
.+++.||||+|||+.+ ..+.+..+..+...+
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~~i 630 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDSDDAMV 630 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcCCCcEE
Confidence 6788999999999965 334443333333344
No 365
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.77 E-value=1.5 Score=54.18 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHcc-ccCCCeEEEecc
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSG-IAAEQSIVCTQP 205 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~-~~~~~~Ilv~~P 205 (1387)
+.+++.||+|+|||..+-.+..+.. ...+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4578899999999985432222211 112346777644
No 366
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.77 E-value=0.5 Score=55.13 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHH
Q 000621 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAA 210 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA 210 (1387)
..-...+..-+..++....+++|+|.|||||||.+=.++.. .....+|+++.-+.+|.
T Consensus 156 gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~--i~~~eRvItiEDtaELq 213 (355)
T COG4962 156 GTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF--IDSDERVITIEDTAELQ 213 (355)
T ss_pred CCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc--CCCcccEEEEeehhhhc
Confidence 34455677777777888889999999999999965333322 23345999999887763
No 367
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.68 E-value=2.4 Score=50.12 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=37.3
Q ss_pred EEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 246 VIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 246 Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
|.+-..-.+.+.+...+....++++|||+|| + ++......++|.+..- |+..+|+.|.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae-~-m~~~aaNaLLK~LEEP-p~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAE-T-MNEAAANALLKTLEEP-GNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchh-h-cCHHHHHHHHHHHhCC-CCCeEEEEEC
Confidence 3333334566667777778899999999999 3 3445566677766544 4655555443
No 368
>PRK04195 replication factor C large subunit; Provisional
Probab=90.67 E-value=2.3 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHc
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADS 192 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~ 192 (1387)
...+++.||+|+|||+.+-.++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4678889999999999765554443
No 369
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.66 E-value=2.1 Score=50.41 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 000621 170 ILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~l 189 (1387)
.+++.||+|+|||+.+-.+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999998764443
No 370
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=0.8 Score=57.29 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
+.+.+...|..+++.++|||||| .+..+....+++.+...++...+|+
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 44455556677889999999999 3344444555665544433443333
No 371
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=90.54 E-value=0.52 Score=50.23 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=62.3
Q ss_pred ccccCcEEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecC
Q 000621 1054 RRSMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFP 1133 (1387)
Q Consensus 1054 ~~~~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~ 1133 (1387)
..++.++++-||.--+|.+|+..++..... ..||++++..-..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~--vgDVyIPrdr~Tr----------------------------------- 52 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGR--VGDVYIPRDRYTR----------------------------------- 52 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCc--ccceecccccccc-----------------------------------
Confidence 445677899999999999999999988773 4777777643211
Q ss_pred CCCcccceeEEEEe-cccchHHHHHHHHHhcCCccCCCCCCceeEEee
Q 000621 1134 PEPKDAFMKAFITF-DGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQQ 1180 (1387)
Q Consensus 1134 ~~~~d~~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~~~~~~kl~~q~ 1180 (1387)
+.+-=|||+| |..+ |.+|++.|+|..|-+- .|.||+
T Consensus 53 ----~sRgFaFVrf~~k~d---aedA~damDG~~ldgR----elrVq~ 89 (256)
T KOG4207|consen 53 ----QSRGFAFVRFHDKRD---AEDALDAMDGAVLDGR----ELRVQM 89 (256)
T ss_pred ----cccceeEEEeeecch---HHHHHHhhcceeeccc----eeeehh
Confidence 3555699999 7778 9999999999998885 888875
No 372
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.42 E-value=0.56 Score=49.76 Aligned_cols=124 Identities=17% Similarity=0.123 Sum_probs=64.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec-cHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ-PRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~-P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
..++.+.|.|+.||||||.+ ..+........+.|.+-- +.... ... +.. ...+++...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~--~~~----~~~-----~~~i~~~~q--------- 82 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGKEVSFA--SPR----DAR-----RAGIAMVYQ--------- 82 (163)
T ss_pred eCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCcC--CHH----HHH-----hcCeEEEEe---------
Confidence 46788989999999999954 334333223344554421 10000 000 000 011232111
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHH
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKY 316 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~ 316 (1387)
.+.|...+.......+.+-+++++||-= ..+|.+....+...+......-..++++ |-+.+.+.++
T Consensus 83 ----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~~~~~ 148 (163)
T cd03216 83 ----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI-SHRLDEVFEI 148 (163)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHh
Confidence 5556544433333345667999999998 7888877766666665443222344443 4444444443
No 373
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.35 E-value=0.3 Score=42.90 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=14.4
Q ss_pred CeEEEEcCCCCcHHHH
Q 000621 169 QILVLIGETGCGKSTQ 184 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~ 184 (1387)
++++|.|++||||||.
T Consensus 24 ~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTL 39 (62)
T ss_pred cEEEEECCCCCCHHHH
Confidence 4788899999999997
No 374
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.04 E-value=1.2 Score=47.96 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEE
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVI 247 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Iv 247 (1387)
....+++||-+||||+-+++.+..... .+.++++..|. +-.|.. ...|....+ ....-++
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~------iD~R~~--------~~~V~Sr~G-----~~~~A~~ 63 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPA------IDTRYG--------VGKVSSRIG-----LSSEAVV 63 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecc------cccccc--------cceeeeccC-----Cccccee
Confidence 356788999999999988887765433 35567776665 111111 111211111 1123455
Q ss_pred EEChhHHHHHhhcCCCCCceeEEEEcCcc
Q 000621 248 YMTDHCLLQHFMNDRDLSRISCIIVDEAH 276 (1387)
Q Consensus 248 v~Tpg~Ll~~l~~~~~l~~l~~IIIDEaH 276 (1387)
|-.+.-+...+........+++|.||||+
T Consensus 64 i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ 92 (201)
T COG1435 64 IPSDTDIFDEIAALHEKPPVDCVLIDEAQ 92 (201)
T ss_pred cCChHHHHHHHHhcccCCCcCEEEEehhH
Confidence 55666777777665544448999999999
No 375
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=90.02 E-value=0.82 Score=38.97 Aligned_cols=46 Identities=37% Similarity=0.538 Sum_probs=36.9
Q ss_pred CCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEEE
Q 000621 938 SGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKVV 989 (1387)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v~ 989 (1387)
-|.|.++..+. ++...|.|+|.+++.|..| ..+++..|.|..|+|.
T Consensus 8 fG~V~~i~~~~------~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~ 54 (56)
T PF13893_consen 8 FGEVKKIKIFK------KKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVS 54 (56)
T ss_dssp TS-EEEEEEET------TSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEE
T ss_pred cccEEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 47778888771 1236699999999999999 7899999999999875
No 376
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.96 E-value=1.2 Score=57.29 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
...+...+...+++++|||||| ++ ..+....+++.+..-++.. ++++.+|
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~-~L-s~~a~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVH-ML-SQAAFNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcc-cC-CHHHHHHHHHHHhCCCCCe-EEEEEeC
Confidence 3444556788899999999999 33 3344555555554433333 4444444
No 377
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=89.95 E-value=0.56 Score=61.24 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH---HHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQLVQFL---ADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~l---l~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...++|.|..|||||+.+..-+ ++..-....+|+++..|+-+|..+.+|+...++.. ...
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~-----------------~~~ 77 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK-----------------EAR 77 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----------------ccc
Confidence 3445567899999998754433 33211234589999999999999999998875210 113
Q ss_pred cEEEEChhHHHHHhhcCC--CCC-ceeEEEEcCcc
Q 000621 245 KVIYMTDHCLLQHFMNDR--DLS-RISCIIVDEAH 276 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~--~l~-~l~~IIIDEaH 276 (1387)
.+.++|-..+...+.... .+. .-++-|+|+.+
T Consensus 78 ~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 78 GLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred CcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 577899877654443321 111 12355778776
No 378
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.86 E-value=1.5 Score=53.95 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~l 189 (1387)
..+++.||+|+|||+.+-.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 367789999999999765443
No 379
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=1 Score=57.91 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
...+...+....+.++|||||| ++ ..+....+++.+..-.....+|+
T Consensus 110 i~~a~~~p~~~~~KViIIDEad-~L-t~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 110 IERAQFAPVQARWKVYVIDECH-ML-STAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHhhChhcCCceEEEEECcc-cc-CHHHHHHHHHHHhcCCcCeEEEE
Confidence 3334444566788999999999 33 34445566666654333333333
No 380
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.80 E-value=1.5 Score=55.64 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccc-cCCCeEEEec
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQ 204 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~-~~~~~Ilv~~ 204 (1387)
+.++|.|++|+|||..+-.+...... ..+.+++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44788999999999754333322211 1244666653
No 381
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.75 E-value=0.55 Score=50.51 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccH
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPR 206 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~ 206 (1387)
+..++.||-+||||+.+++.+.... ..+.+++++-|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~-~~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYE-IAGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH-HTT-EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHH-hCCCeEEEEEec
Confidence 3567889999999999888775442 235688888776
No 382
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=89.71 E-value=2.7 Score=49.59 Aligned_cols=52 Identities=25% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
+.+.+...+....++++|||+|| + ++.....+++|.+..-+++..+|+.|.-
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae-~-m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPAD-A-INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHh-h-hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 45555556677889999999999 3 4556677788877665556666666543
No 383
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.65 E-value=1.5 Score=50.78 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=34.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCC-----CeE-EEeccHHHHHHHHHHHHHHHh
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAE-----QSI-VCTQPRKIAAISLAQRVREES 221 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~-----~~I-lv~~P~r~LA~qla~rv~~~~ 221 (1387)
..++|+|+||-|||+.+-.|.-.+..... ..| .+-.|...-...++..+-..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 57788899999999988777755432211 124 444566555556666666554
No 384
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=89.64 E-value=0.85 Score=60.22 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH---HHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQLVQFL---ADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~l---l~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...++|.|..|||||+.+..-+ ++..-....+|+++.-|+-+|..+.+|+.+..+.. ..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------------------~~ 83 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------------------QG 83 (721)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------------------CC
Confidence 3456667899999998754433 33222234689999999999999999998875210 12
Q ss_pred cEEEEChhHHHHHhhcCC----CCCceeEEEEcCcc
Q 000621 245 KVIYMTDHCLLQHFMNDR----DLSRISCIIVDEAH 276 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~----~l~~l~~IIIDEaH 276 (1387)
.+.++|-..+...+.... .+. -.+-|+|+.+
T Consensus 84 ~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 84 GMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred CCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 467899877654443321 121 1345788776
No 385
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=89.54 E-value=0.83 Score=58.08 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=23.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC 202 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv 202 (1387)
..++.+.|+||+||||||.+ ..+........+.|.+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLL-MLLTGLLDPLQGEVTL 394 (529)
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEE
Confidence 46788888999999999954 4444332233455544
No 386
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.52 E-value=0.64 Score=55.95 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHH
Q 000621 166 YGEQILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~ 187 (1387)
..+..++|+|||||||||.+-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3567888999999999997533
No 387
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=1.6 Score=53.11 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=62.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEEE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIY 248 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv 248 (1387)
-.+++.||.|||||+.+.+......+. -|=++.|......+=..+++..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FP---FvKiiSpe~miG~sEsaKc~~i---------------------------- 587 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFP---FVKIISPEDMIGLSESAKCAHI---------------------------- 587 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCC---eEEEeChHHccCccHHHHHHHH----------------------------
Confidence 367789999999999888877666542 4556667644322222222211
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccch--------hHHHHHHHHHHhcc-c-CccEEeecccCCHHHHH
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNT--------DLLLALVKDLLCRR-F-DLRLVIMSATADAHQLS 314 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~--------d~l~~~lk~l~~~~-~-~~kiIlmSATl~~~~~~ 314 (1387)
+....|..-+.+++||+|+.. |.+|. ...+..+..+.+.. | +.|++++.-|-..+.++
T Consensus 588 -------~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 588 -------KKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred -------HHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 111112234567999999998 88775 33444455544433 3 45777777676555544
No 388
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.44 E-value=0.97 Score=50.12 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=22.1
Q ss_pred HHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHH
Q 000621 160 DILRRIYG--EQILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 160 ~i~~~l~~--~~vviI~a~TGSGKTt~i~~~ll 190 (1387)
.|...+.+ .+.++|.||.|+|||+.+-.++.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHH
Confidence 34444444 58899999999999996555543
No 389
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=1.8 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=18.3
Q ss_pred CCCceeEEEEcCccccccchh--HHHHHHHH
Q 000621 263 DLSRISCIIVDEAHERSLNTD--LLLALVKD 291 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d--~l~~~lk~ 291 (1387)
.....-+||+||++ .+.+.+ .+..+++.
T Consensus 120 ~~~~~~IvvLDEid-~L~~~~~~~LY~L~r~ 149 (366)
T COG1474 120 KKGKTVIVILDEVD-ALVDKDGEVLYSLLRA 149 (366)
T ss_pred hcCCeEEEEEcchh-hhccccchHHHHHHhh
Confidence 35567789999999 666653 44444443
No 390
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.09 E-value=0.78 Score=52.75 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 157 YRQDILRRIY-GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 157 q~~~i~~~l~-~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
+.+.+..++. .+..++|+|+|||||||.+-.++... .....+++.+.
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i-~~~~~~iitiE 115 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL-NTPEKNIITVE 115 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh-CCCCCeEEEEC
Confidence 4455555665 45688999999999999765444322 22234565553
No 391
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=89.09 E-value=1.8 Score=55.76 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred cCCCcEEEEeCCHHHHHHHHHHhcC----------------------CCCceEeccCCCCHhhhhhhhccCC-----Cce
Q 000621 365 EKEGTILAFLTSKMEVEWACEKFDA----------------------PSAVALPFHGQLSFDEQFCVFKSYP-----GRR 417 (1387)
Q Consensus 365 ~~~g~iLVF~~s~~eie~l~~~L~~----------------------~~~~v~~lh~~l~~~er~~v~~~f~-----g~~ 417 (1387)
.-+.+.|||-.+......+-.+|.. .|.....+.|..+..+|.+..+.|+ ..+
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3467999999887766665555531 2345678899999999999999992 235
Q ss_pred EEEEecchhhcCCCCCCceEEEecCCCccccccCCCCcccceecccCHhhHHHHhcccCCCCCCeEEEeeccccccc---
Q 000621 418 KVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDFET--- 494 (1387)
Q Consensus 418 kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~L~~~~iS~a~~~QR~GRaGR~~~G~~~~L~s~~~~~~--- 494 (1387)
-.||+|-+.+-|||+-..+-||-++.+=.+.|| + +.+=|+=|-|...|-..|+|+.....+.
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyD----t-----------QSIFRvyRfGQtKPvyiYRfiAqGTmEeKIY 1284 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYD----T-----------QSIFRVYRFGQTKPVYIYRFIAQGTMEEKIY 1284 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccc----h-----------HHHHHHHhhcCcCceeehhhhhcccHHHHHH
Confidence 789999999999999999999888775444444 2 3346777778778999999987665432
Q ss_pred ----------CCCCCCcchhccchHHHHHHHHHcC
Q 000621 495 ----------RPLNQEPEIHRVHLGIAVLRILALG 519 (1387)
Q Consensus 495 ----------~~~~~~pEi~r~~L~~~~L~l~~lg 519 (1387)
+..-....|.|.-..+-++.|..+.
T Consensus 1285 kRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fe 1319 (1567)
T KOG1015|consen 1285 KRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFE 1319 (1567)
T ss_pred HHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcC
Confidence 1222233455655555556665554
No 392
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.04 E-value=0.59 Score=57.86 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=35.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.+.+++|.|++|+|||+.+.+++.... ..+.+++++. ..+...|+..+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs-~Ees~~qi~~ra~r 129 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVS-GEESASQIKLRAER 129 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-ccccHHHHHHHHHH
Confidence 467999999999999999888876543 2345677654 33445566666444
No 393
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.98 E-value=1.6 Score=56.12 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=28.6
Q ss_pred HHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 256 QHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 256 ~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
..+...+.+.+.+++||||+| ++ ...-...+++.+..-++...+|+.+
T Consensus 117 e~~~~~P~~~~~KVvIIdEad-~L-t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVH-ML-STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChh-hc-CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334445678889999999999 33 2333445555554444444445543
No 394
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.95 E-value=1.1 Score=56.88 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=23.5
Q ss_pred hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh
Q 000621 258 FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC 294 (1387)
Q Consensus 258 l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~ 294 (1387)
+...+...++.++||||+| ++ .......+++.+..
T Consensus 111 ~~~~p~~~~~KVvIIDEa~-~L-s~~a~naLLK~LEe 145 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVH-ML-SNSAFNALLKTIEE 145 (563)
T ss_pred HHhchhcCCCEEEEEEChh-hc-CHHHHHHHHHhhcc
Confidence 3445667889999999999 33 34445556666544
No 395
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.88 E-value=1.1 Score=58.87 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHcc---ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSG---IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~---~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...++|.|..|||||+.+..-+.... -....+|+++..|+-+|.++-+|+.+.++.. ...
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-----------------~~~ 76 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG-----------------EAR 76 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----------------ccC
Confidence 44566679999999998655443321 1234589999999999999999998865210 124
Q ss_pred cEEEEChhHHHHHhhcCC----CCCceeEEEEcCccc
Q 000621 245 KVIYMTDHCLLQHFMNDR----DLSRISCIIVDEAHE 277 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~----~l~~l~~IIIDEaHe 277 (1387)
++.|+|-..|...+.... .+ .-.+-|+|+.+.
T Consensus 77 ~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 77 GLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred CeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 678899887765543331 11 113457788773
No 396
>PRK06620 hypothetical protein; Validated
Probab=88.85 E-value=0.92 Score=50.48 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.7
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLV 186 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~ 186 (1387)
+.+++.||+|||||+.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 457889999999998543
No 397
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=88.79 E-value=0.87 Score=60.11 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH---HccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQLVQFLA---DSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll---~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...++|.|..|||||+++..-+. +..-....+|+++..|+-+|..+.+|+.+..+. ...
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~------------------~~~ 78 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT------------------SAR 78 (715)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc------------------ccc
Confidence 34556679999999998554443 322223458999999999999999999887521 012
Q ss_pred cEEEEChhHHHHHhhcCC----CCCceeEEEEcCcc
Q 000621 245 KVIYMTDHCLLQHFMNDR----DLSRISCIIVDEAH 276 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~----~l~~l~~IIIDEaH 276 (1387)
.+.++|-..+...+.... .+.. ++-|+|+.+
T Consensus 79 ~~~i~TfHs~~~~iLr~~~~~~g~~~-~f~i~d~~d 113 (715)
T TIGR01075 79 GMWIGTFHGLAHRLLRAHHLDAGLPQ-DFQILDSDD 113 (715)
T ss_pred CcEEEcHHHHHHHHHHHHHHHhCCCC-CCeecCHHH
Confidence 567899876654433221 1211 345778776
No 398
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.74 E-value=0.6 Score=55.42 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
+.+.+...+..+..+++|||||| .++......++|.+..-+++..+|+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred HHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 44445555667789999999999 34556677778876654444444433
No 399
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.72 E-value=1.2 Score=49.77 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHcc--ccCCCeEEEecc
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSG--IAAEQSIVCTQP 205 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~--~~~~~~Ilv~~P 205 (1387)
+.++|.||+|+|||-. ++.+.... ...+.+|+++..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH
Confidence 4578899999999983 33333321 123456777643
No 400
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.67 E-value=0.66 Score=59.05 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHH-HHHHHHhc
Q 000621 156 MYRQDILRRIYGE--QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLA-QRVREESR 222 (1387)
Q Consensus 156 ~q~~~i~~~l~~~--~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla-~rv~~~~~ 222 (1387)
.++.++++++... +.+++++++-+|||+.+..++.-..-...+.+++++||..+|.... .++.-.+.
T Consensus 19 Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 19 PYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred hhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4677888888775 4677789999999996665554333344578999999999998765 56665543
No 401
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.62 E-value=0.51 Score=50.52 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec-cHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccc---c
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ-PRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQ---H 241 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~-P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~---~ 241 (1387)
..++.+.|.|+.||||||.+ ..+........+.|.+-- +.... ..... ..+++........ +
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~---------~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEIKVLGKDIKKE----PEEVK---------RRIGYLPEEPSLYENLT 89 (173)
T ss_pred cCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccc----hHhhh---------ccEEEEecCCccccCCc
Confidence 36788888999999999943 444332222345554411 11000 00110 1233321110000 0
Q ss_pred CCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc
Q 000621 242 FDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR 296 (1387)
Q Consensus 242 ~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~ 296 (1387)
-...+. .+.|..-+.........+-+++++||-- ..+|.+....+...+....
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELK 142 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHH
Confidence 000111 4555443333223345667999999999 7888877777766665543
No 402
>PRK09087 hypothetical protein; Validated
Probab=88.59 E-value=1.6 Score=48.91 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLV 186 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~ 186 (1387)
++.++|.||+|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5567889999999998554
No 403
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=88.58 E-value=0.53 Score=40.85 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=37.9
Q ss_pred ccChhhHHHHHhhhccceEEEEEecc--cceEEEcCCHhhHHHHHHHH
Q 000621 1266 LFTRDGINLRKSLQQETRTFILFDRH--TLSVKIFGAPDNIAEAQQKL 1311 (1387)
Q Consensus 1266 ~~~~~g~~~l~~ie~~~~v~i~~d~~--~~~~rifG~~~~~~~a~~~i 1311 (1387)
+.++. .+-++.|++++|+.|..+.. +..+.|.|++++++.|+..|
T Consensus 14 iIG~~-G~~i~~I~~~t~~~I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 14 IIGKK-GSNIKEIEEETGVKIQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp HHTGG-GHHHHHHHHHHTSEEEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred EECCC-CCcHHHhhhhcCeEEEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 34444 45899999999999999876 67999999999999998875
No 404
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.58 E-value=3.3 Score=48.41 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=71.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe--ccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT--QPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKV 246 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~--~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~I 246 (1387)
.+++++|-.|+||||.+..+.... ...+.+|++. -.-|+.|+...+.+.+..+.. .+.. . ...
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~----vI~~----~-~G~----- 204 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVP----VISG----K-EGA----- 204 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCe----EEcc----C-CCC-----
Confidence 588889999999999865544322 1234455553 467888887777777664211 1111 0 111
Q ss_pred EEEChhH-HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHh-cccCc------cEEeecccCCHH
Q 000621 247 IYMTDHC-LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLC-RRFDL------RLVIMSATADAH 311 (1387)
Q Consensus 247 vv~Tpg~-Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~-~~~~~------kiIlmSATl~~~ 311 (1387)
.|.. ..+-++ ...-.++++|++|=|- |+.+..-++.-++++.+ ..+.. .++.+-||.-.+
T Consensus 205 ---DpAaVafDAi~-~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 205 ---DPAAVAFDAIQ-AAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ---CcHHHHHHHHH-HHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 1221 222222 1235689999999999 88776666666555544 33333 345558886433
No 405
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.55 E-value=5.6 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
....+++.||+|+|||+.+-.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34677889999999999654433
No 406
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.53 E-value=1.8 Score=58.03 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=34.4
Q ss_pred hhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc----------cCccEEeecccCCHHHHHHHh
Q 000621 251 DHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR----------FDLRLVIMSATADAHQLSKYF 317 (1387)
Q Consensus 251 pg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~----------~~~kiIlmSATl~~~~~~~~f 317 (1387)
.|.|...+.. ..+++|++||++. .+.++...++..+...+ -.-.+++||..+..+.+.+.+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 3566666654 3578999999983 33344444443332211 012567777777666555543
No 407
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.38 E-value=0.71 Score=54.37 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=30.5
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHH
Q 000621 161 ILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKI 208 (1387)
Q Consensus 161 i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~ 208 (1387)
+-..+..+..++|+|+|||||||.+-. ++.. .....+++++..+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~a-l~~~-~~~~~~iv~ied~~E 182 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKS-LVDE-IPKDERIITIEDTRE 182 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHH-HHcc-CCccccEEEEcCccc
Confidence 344566788999999999999996533 3333 333456666655444
No 408
>PRK10436 hypothetical protein; Provisional
Probab=88.37 E-value=0.87 Score=56.39 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=23.8
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCCCcHHHHHHHHH
Q 000621 157 YRQDILRRIY-GEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 157 q~~~i~~~l~-~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
+.+.+..++. .+..++|+|||||||||.+-..+
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l 239 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLYSAL 239 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHH
Confidence 4444555554 56789999999999999765444
No 409
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.32 E-value=0.27 Score=54.61 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=46.8
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhc-ccCccEEeecccCCHHHHHHHhc
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCR-RFDLRLVIMSATADAHQLSKYFY 318 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~-~~~~kiIlmSATl~~~~~~~~f~ 318 (1387)
.+.--+.||..|+...-..--+.+++|+||+= --.|..|.......+... ..+ ++ ++.+|-+...+.+|..
T Consensus 144 PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~-~t-iv~VSHd~~~I~~~Cd 215 (249)
T COG1134 144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKN-KT-IVLVSHDLGAIKQYCD 215 (249)
T ss_pred chhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcC-CE-EEEEECCHHHHHHhcC
Confidence 34444568877776555545567999999998 566778887777777666 444 33 3345566667777653
No 410
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.31 E-value=2 Score=48.35 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=26.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
..+..+++.|++|+|||+.+.+++.... ..+.+++++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi 58 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYV 58 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEE
Confidence 3567889999999999998778776532 233455544
No 411
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=88.26 E-value=1.8 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=23.0
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhc
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCR 295 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~ 295 (1387)
.+.+-+++++||-- ..+|.+....+...+...
T Consensus 106 l~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 106 LLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL 137 (166)
T ss_pred HHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh
Confidence 45667899999998 778877666666555443
No 412
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.24 E-value=2.1 Score=56.13 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ 188 (1387)
..+++.||+|+|||+.+-.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46788999999999865443
No 413
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.23 E-value=0.56 Score=51.26 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=24.0
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC 202 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv 202 (1387)
+..+.+++|+||.||||||.+ ..+........+.|.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL-RclN~LE~~~~G~I~i 61 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL-RCLNGLEEPDSGSITV 61 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH-HHHHCCcCCCCceEEE
Confidence 457889999999999999943 3332222233455554
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.14 E-value=0.68 Score=55.43 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=25.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPR 206 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~ 206 (1387)
.+..++|+|||||||||.+-.++.......+++|+.+.-.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 4678999999999999976443322221224566665433
No 415
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.13 E-value=1.1 Score=50.61 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=32.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.+.+++|.|++|+|||+.+.+++.+... .+.+++++.- .+...++.+++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~-e~~~~~~~~~~~~ 74 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT-ENTSKSYLKQMES 74 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc-CCCHHHHHHHHHH
Confidence 4678888999999999988888766432 3456655422 2223344444444
No 416
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.10 E-value=0.82 Score=53.99 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
+.+.+...+..+.++++|||+|| .+......+++|.+..-+++..+|+.|.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred HHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 44455556677889999999999 3445567778887766555555555443
No 417
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.03 E-value=1.6 Score=52.08 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=35.8
Q ss_pred hHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 252 HCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 252 g~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
-.|.+.+...+....++++|||+|| + ++......++|.+..-+++..+|+.|..
T Consensus 118 R~l~~~~~~~~~~~~~kV~iI~~ae-~-m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 118 RALLDFCGVGTHRGGARVVVLYPAE-A-LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHHhccCCccCCceEEEEechh-h-cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 3455666666677889999999999 3 3555667778877654444555554443
No 418
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=87.89 E-value=2.2 Score=49.78 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHhcC--CeEEEEcCCCCcHHHHHHHH
Q 000621 161 ILRRIYGE--QILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 161 i~~~l~~~--~vviI~a~TGSGKTt~i~~~ 188 (1387)
+-..++.+ ..+|+.||+|+|||+.+-.+
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArli 182 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLI 182 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHH
Confidence 34445555 46788999999999865443
No 419
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.85 E-value=0.71 Score=54.95 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+.+.+...+..+.++++|||+|| + ++......++|.+..-+++.-+|+.|
T Consensus 96 l~~~~~~~~~~g~~kV~iI~~ae-~-m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 96 VTEKLYEHARLGGAKVVWLPDAA-L-LTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred HHHHHhhccccCCceEEEEcchH-h-hCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 45556666778899999999999 3 44456677777776544444444443
No 420
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=87.78 E-value=3.3 Score=36.10 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=48.4
Q ss_pred EEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEEE
Q 000621 914 VDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKVV 989 (1387)
Q Consensus 914 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v~ 989 (1387)
+.|+|.+.. .++.++..++... |.+.++.... .........|.|+|.+++.|..+ ..+++..+.|..++|.
T Consensus 2 i~i~~l~~~-~~~~~i~~~~~~~--g~i~~~~~~~--~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 2 LFVGNLPPD-VTEEDLRELFSKF--GKVESVRIVR--DKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred EEEeCCCCc-cCHHHHHHHHHhc--CCEEEEEEee--CCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 557765555 5566777777554 7777777661 11112355689999999999999 5677777888888764
No 421
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.74 E-value=1.2 Score=57.60 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHHh---cC-CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhc
Q 000621 152 LPIYMYRQDILRRIY---GE-QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESR 222 (1387)
Q Consensus 152 lP~~~q~~~i~~~l~---~~-~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~ 222 (1387)
.|.-.|..+|-..+. .+ ...++.|-||||||..+...+... +..+||++|...+|.|++..++.++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 455566665555433 22 234468999999999877655443 35689999999999999999998874
No 422
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=87.55 E-value=2.4 Score=53.79 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=48.6
Q ss_pred eccCCccEEEEEcCCchhHHH-HHhhhhccc-CCeeEEEecCccccCcEEEcCCCcccCHHHHHhhhhcc
Q 000621 1014 PRRLSKGFAVVKCDATDVEFL-VKDFFDLAI-GGRYVRCEIGRRSMDAVVISGLDKELSEDEILGELRKV 1081 (1387)
Q Consensus 1014 ~r~~~~~~~~l~f~~~~~a~~-v~~~~~~~i-~~~~v~~~~~~~~~~~i~l~~l~~~~~~~di~~~~~~~ 1081 (1387)
....++|||+|.|.+.+.|.. +....+..+ .|+.+.+..+.. ..++.+.|||.++|+++|++.+...
T Consensus 94 ~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~-~~rLFVgNLP~~~TeeeL~eeFskv 162 (578)
T TIGR01648 94 FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD-NCRLFVGGIPKNKKREEILEEFSKV 162 (578)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc-CceeEeecCCcchhhHHHHHHhhcc
Confidence 345688999999999888844 444444444 366665544432 4568999999999999999988653
No 423
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.47 E-value=13 Score=49.95 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred hHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc----------cCccEEeecccCCHHHH
Q 000621 252 HCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR----------FDLRLVIMSATADAHQL 313 (1387)
Q Consensus 252 g~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~----------~~~kiIlmSATl~~~~~ 313 (1387)
|.|...+... .+++|++||+|. .+.++...+++.+..-+ -.--+++||.....+.+
T Consensus 601 ~~l~~~~~~~----p~~VvllDeiek--a~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i 666 (821)
T CHL00095 601 GQLTEAVRKK----PYTVVLFDEIEK--AHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI 666 (821)
T ss_pred chHHHHHHhC----CCeEEEECChhh--CCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHH
Confidence 3455555433 458999999993 44555555555543311 01235566666655443
No 424
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.27 E-value=2.2 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ 188 (1387)
..+++.||+|+|||+.+-.+
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47888999999999876544
No 425
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.19 E-value=2.9 Score=50.65 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc-cccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 141 IVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADS-GIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 141 ll~~l~~~~~~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~-~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
+++.+++.-..+-+ .|+++.+....+.+ .|.|=.|||||..+..-+.+. ...+..+|++|.=|+.|+.++-..+.+
T Consensus 152 ~l~~ieskIanfD~-~Q~kaa~~~~~G~q--rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~ 228 (660)
T COG3972 152 LLDTIESKIANFDT-DQTKAAFQSGFGKQ--RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPE 228 (660)
T ss_pred HHHHHHHHHhcccc-hhheeeeecCCchh--hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHH
Confidence 45555543333333 35555555555656 457899999998655444332 233456999999999999999988888
Q ss_pred Hh
Q 000621 220 ES 221 (1387)
Q Consensus 220 ~~ 221 (1387)
++
T Consensus 229 F~ 230 (660)
T COG3972 229 FF 230 (660)
T ss_pred HH
Confidence 65
No 426
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=24 Score=46.25 Aligned_cols=120 Identities=19% Similarity=0.170 Sum_probs=57.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEEE
Q 000621 169 QILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIY 248 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Ivv 248 (1387)
...++.||||.|||..+-+ |.+..++.. ..++..-.-+- +=...++++.+..+ | -|||..+
T Consensus 522 gsFlF~GPTGVGKTELAka-LA~~Lfg~e-~aliR~DMSEy--~EkHsVSrLIGaPP-G-YVGyeeG------------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKA-LAEALFGDE-QALIRIDMSEY--MEKHSVSRLIGAPP-G-YVGYEEG------------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHH-HHHHhcCCC-ccceeechHHH--HHHHHHHHHhCCCC-C-Cceeccc-------------
Confidence 3777789999999985433 333333322 22332222111 12233445543322 2 4565332
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcc----c----C--ccEEeecccCCHHHHHHH
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRR----F----D--LRLVIMSATADAHQLSKY 316 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~----~----~--~kiIlmSATl~~~~~~~~ 316 (1387)
|.|.....+. .|++|.+||+.. ...|.+..++..+-.-+ . + =-+|+||.-+-.+.+.+.
T Consensus 583 ---G~LTEaVRr~----PySViLlDEIEK--AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 583 ---GQLTEAVRRK----PYSVILLDEIEK--AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred ---cchhHhhhcC----CCeEEEechhhh--cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 2333333333 489999999872 23344444444332211 0 1 135666666555554443
No 427
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.10 E-value=4.8 Score=48.53 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCCcHHHHH---HHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQL---VQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i---~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
..+++.+|=-||||||.+ ..|+.. .....-+++.-..|.+|....+.+++..+ +-++... ... .
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~-------v~~f~~~-~~~---~ 166 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVG-------VPFFGSG-TEK---D 166 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcC-------CceecCC-CCC---C
Confidence 357888899999999974 344433 22233455667888999888777777641 2222211 110 0
Q ss_pred cEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC--CHHHHHHHhc
Q 000621 245 KVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA--DAHQLSKYFY 318 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl--~~~~~~~~f~ 318 (1387)
|--+.+.-........+++||||=|-...++.++...+..+-....|+=-++++-|+. ++...++-|.
T Consensus 167 ------Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 167 ------PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred ------HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1112121111223456899999999944466665555554444566776677777775 4444555554
No 428
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=87.05 E-value=0.93 Score=52.47 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=24.8
Q ss_pred HHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHH
Q 000621 159 QDILRRIYG----EQILVLIGETGCGKSTQLVQFLAD 191 (1387)
Q Consensus 159 ~~i~~~l~~----~~vviI~a~TGSGKTt~i~~~ll~ 191 (1387)
++|...|.. ..++.|.|+.|+|||+.+.+++.+
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 445555544 579999999999999988776644
No 429
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.00 E-value=1.1 Score=57.25 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHHHHHHHHHh-cCCeEEEEcCCCCcHHHHHHHHH
Q 000621 156 MYRQDILRRIY-GEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 156 ~q~~~i~~~l~-~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
.+.+.+..++. .+..++|+|||||||||.+-..+
T Consensus 303 ~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l 337 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL 337 (564)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 34555666655 46788899999999999764444
No 430
>PHA02244 ATPase-like protein
Probab=86.88 E-value=1.7 Score=51.87 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLA 190 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll 190 (1387)
....+..++..+..+++.||||+|||+.+-.+..
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence 3445667777888888899999999986655443
No 431
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.85 E-value=2.3 Score=52.74 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 262 RDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 262 ~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
+...+..+|||||+| ++ ..+....+++.+..-++...+|+.
T Consensus 117 ~~~~~~kvvIIdead-~l-t~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 117 PSKSRYKIYIIDEVH-ML-TKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred hhcCCCEEEEEecHH-hh-CHHHHHHHHHHhhcCCCCceEEEE
Confidence 345778999999999 33 233344455555544444444443
No 432
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.84 E-value=0.63 Score=51.89 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=25.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE
Q 000621 165 IYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC 202 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv 202 (1387)
+.....++++|+|||||||.+..++--......+.|+-
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiT 161 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIIT 161 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEE
Confidence 35678889999999999998776663332233334443
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.71 E-value=0.75 Score=51.17 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.9
Q ss_pred hcCCeEEEEcCCCCcHHHH
Q 000621 166 YGEQILVLIGETGCGKSTQ 184 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~ 184 (1387)
..+..+.|+||+||||||.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4788999999999999995
No 434
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.62 E-value=2.9 Score=45.09 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=27.5
Q ss_pred CCceeEEEEcCccccccchhHHHHHHHHHHhccc-CccEEeecc
Q 000621 264 LSRISCIIVDEAHERSLNTDLLLALVKDLLCRRF-DLRLVIMSA 306 (1387)
Q Consensus 264 l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~-~~kiIlmSA 306 (1387)
+.+.+++++||.. ..++......+.+.+..... +..+|+.|-
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3566899999999 78887766666655554332 345555443
No 435
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=86.56 E-value=0.75 Score=55.22 Aligned_cols=21 Identities=48% Similarity=0.672 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~ 187 (1387)
.+..++|+|||||||||.+-.
T Consensus 133 ~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 668999999999999997543
No 436
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.51 E-value=2.1 Score=53.15 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCCcHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLV 186 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~ 186 (1387)
--+-+++.||+|||||..+-
T Consensus 222 PprGvLlHGPPGCGKT~lA~ 241 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLAN 241 (802)
T ss_pred CCCceeeeCCCCccHHHHHH
Confidence 34677889999999997443
No 437
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=86.50 E-value=1.5 Score=39.06 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=41.9
Q ss_pred EEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCccc
Q 000621 1060 VVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDA 1139 (1387)
Q Consensus 1060 i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~ 1139 (1387)
|.++|||..+|++||.+.+.... + +.++.+.+. ...-.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g-~-v~~v~~~~~----------------------------------------~~~~~ 38 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG-P-VEKVRLIKN----------------------------------------KDGQS 38 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS-B-EEEEEEEES----------------------------------------TTSSE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC-C-cceEEEEee----------------------------------------ecccc
Confidence 46899999999999999987643 1 222222211 11125
Q ss_pred ceeEEEEe-cccchHHHHHHHHHhcCCccCC
Q 000621 1140 FMKAFITF-DGRLHLEAAKALEQLEGKVLPG 1169 (1387)
Q Consensus 1140 ~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~ 1169 (1387)
+-.|+|.| ++.+ |.+|++.++|..+-+
T Consensus 39 ~~~a~v~f~~~~~---a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 39 RGFAFVEFSSEED---AKRALELLNGKEIDG 66 (70)
T ss_dssp EEEEEEEESSHHH---HHHHHHHHTTEEETT
T ss_pred CCEEEEEeCCHHH---HHHHHHHCCCcEECC
Confidence 67799999 6666 888888888766543
No 438
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.50 E-value=0.99 Score=55.77 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=38.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcc-----ccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSG-----IAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~-----~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
.+.+++|+|..||||||++++-+.-.. .-..+.|+++.|.|.....++..+-++
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 467899999999999998655443221 112345999999999887777666554
No 439
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.49 E-value=2.3 Score=45.94 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=36.7
Q ss_pred EChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCCHHHHHHH
Q 000621 249 MTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKY 316 (1387)
Q Consensus 249 ~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~~~~~~ 316 (1387)
.+.|.-.+.......+.+-+++++||-- ..+|......+.+.+......-..++++ |-+.+.+.++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~-sh~~~~~~~~ 170 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELADAGKAVLLI-SSELDELLGL 170 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCHHHHHHh
Confidence 4445433333333356677899999998 7888877666666555443222344443 3333344333
No 440
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=86.36 E-value=1.1 Score=49.96 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHc
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADS 192 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~ 192 (1387)
..++++.|.|++|+|||+.+.+++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 357899999999999999877776554
No 441
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=86.24 E-value=2.2 Score=53.49 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=70.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH-Hcc--ccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCCcEE
Q 000621 171 LVLIGETGCGKSTQLVQFLA-DSG--IAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVI 247 (1387)
Q Consensus 171 viI~a~TGSGKTt~i~~~ll-~~~--~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~~Iv 247 (1387)
+++.-+=|.|||+.+....+ ... -..+..|+++.+++.-|..+.+.+............. ............|.
T Consensus 25 ~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~---~~~~~~~~~~~~i~ 101 (477)
T PF03354_consen 25 VYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKR---KKPKIIKSNKKEIE 101 (477)
T ss_pred EEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccc---hhhhhhhhhceEEE
Confidence 34445899999986333222 111 1234689999999999999999888876432211100 00000011123344
Q ss_pred EEChhHHHHHhhcCC---CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEE-eecccCC
Q 000621 248 YMTDHCLLQHFMNDR---DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLV-IMSATAD 309 (1387)
Q Consensus 248 v~Tpg~Ll~~l~~~~---~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiI-lmSATl~ 309 (1387)
+-..+..++.+..++ .=.+.+++|+||+|+ .-+.+. ...++.-...+++..++ +.||..+
T Consensus 102 ~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~-~~~~~~-~~~l~~g~~~r~~pl~~~ISTag~~ 165 (477)
T PF03354_consen 102 FPKTGSFFKALSSDADSLDGLNPSLAIFDELHA-HKDDEL-YDALESGMGARPNPLIIIISTAGDD 165 (477)
T ss_pred EcCCCcEEEEEecCCCCccCCCCceEEEeCCCC-CCCHHH-HHHHHhhhccCCCceEEEEeCCCCC
Confidence 443344443333333 112568999999994 333333 33344444445565555 4456543
No 442
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=86.17 E-value=2.2 Score=44.30 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred cEEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcc
Q 000621 1059 AVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKD 1138 (1387)
Q Consensus 1059 ~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d 1138 (1387)
.|.+.|||..+||+||.+++.... .+.++.++... .+..
T Consensus 36 ~lfVgnL~~~~te~~L~~~F~~~G--~I~~v~i~~d~------------------------------------~tg~--- 74 (144)
T PLN03134 36 KLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDR------------------------------------ETGR--- 74 (144)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEEecC------------------------------------CCCC---
Q ss_pred cceeEEEEe-cccchHHHHHHHHHhcCCccCCCCCCceeEEe
Q 000621 1139 AFMKAFITF-DGRLHLEAAKALEQLEGKVLPGCGPWQKMKCQ 1179 (1387)
Q Consensus 1139 ~~~kA~~~F-d~~~~~~a~~al~~l~g~~lp~~~~~~kl~~q 1179 (1387)
.+-=|+|.| +..+ |.+|+++|+|..+.+. +|+|+
T Consensus 75 ~kGfaFV~F~~~e~---A~~Al~~lng~~i~Gr----~l~V~ 109 (144)
T PLN03134 75 SRGFGFVNFNDEGA---ATAAISEMDGKELNGR----HIRVN 109 (144)
T ss_pred cceEEEEEECCHHH---HHHHHHHcCCCEECCE----EEEEE
No 443
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.82 E-value=1.1 Score=53.23 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=30.8
Q ss_pred HHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 255 LQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 255 l~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
...+...+.....+++|||||| ++ +.+....+++.+..-+++..+|+.
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~-~~-~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHAD-KM-TASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred HHHHhhCCcccCceEEEeehHh-hh-CHHHHHHHHHHhcCCCCCceEEEE
Confidence 3444445567788999999999 33 344556677776654455555553
No 444
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=85.79 E-value=2.6 Score=45.36 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCc--eeEEEEcCccccccchhHHHHHHHHHHhcc-cCccEEeec
Q 000621 263 DLSR--ISCIIVDEAHERSLNTDLLLALVKDLLCRR-FDLRLVIMS 305 (1387)
Q Consensus 263 ~l~~--l~~IIIDEaHer~~~~d~l~~~lk~l~~~~-~~~kiIlmS 305 (1387)
.+.+ -+++++||.= ..+|......+...+.... .+.-+|+.|
T Consensus 102 l~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 102 LFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred HhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3556 7899999998 7888776666665555433 234444433
No 445
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.76 E-value=3.6 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~l 189 (1387)
...+++.||+|+|||+.+-...
T Consensus 165 p~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred CCceEEECCCCCChHHHHHHHH
Confidence 3567889999999998654433
No 446
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=85.73 E-value=1.1 Score=62.36 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEE
Q 000621 154 IYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVI 231 (1387)
Q Consensus 154 ~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg 231 (1387)
+..|+++|. ..+..++|.|..|||||+.+...+..... ....+++++.=|+.+|..+.+|+.+.+........ .
T Consensus 3 t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p-~ 78 (1232)
T TIGR02785 3 TDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP-N 78 (1232)
T ss_pred CHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc-h
Confidence 345666665 35667788999999999986655544321 12246999999999999999999886632111000 0
Q ss_pred EecCCCccccCCCcEEEEChhHHHHHhhcCC-CCCce--eEEEEcCccccccchhHHHHHHHHH
Q 000621 232 CYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRI--SCIIVDEAHERSLNTDLLLALVKDL 292 (1387)
Q Consensus 232 ~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l--~~IIIDEaHer~~~~d~l~~~lk~l 292 (1387)
. .........-...-|+|-..+...+.... ..-++ ++=|.||.....+..+.+..++...
T Consensus 79 ~-~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~~ 141 (1232)
T TIGR02785 79 S-KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEEE 141 (1232)
T ss_pred h-HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111224567888776665444333 22122 4567998885555555555555443
No 447
>smart00362 RRM_2 RNA recognition motif.
Probab=85.73 E-value=3.6 Score=35.60 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=46.5
Q ss_pred EEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEE
Q 000621 914 VDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKV 988 (1387)
Q Consensus 914 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v 988 (1387)
+.|.|.+.+ .++.++..++. -.|.+.++.... .. +....+|.|+|.|++.|.++ ..+++..+.|..|+|
T Consensus 2 v~i~~l~~~-~~~~~l~~~~~--~~g~v~~~~~~~--~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPD-VTEEDLKELFS--KFGPIESVKIPK--DT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCc-CCHHHHHHHHH--hcCCEEEEEEec--CC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 566765444 44566667764 345566666551 11 23346789999999999999 567778888888775
No 448
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.70 E-value=3.2 Score=56.48 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=25.5
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCcHHHHHHHHHHH
Q 000621 158 RQDILRRIY---GEQILVLIGETGCGKSTQLVQFLAD 191 (1387)
Q Consensus 158 ~~~i~~~l~---~~~vviI~a~TGSGKTt~i~~~ll~ 191 (1387)
+..+...+. ...+++|+||.|+||||.+.+|+..
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 344444443 4578999999999999999998843
No 449
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=85.69 E-value=0.66 Score=40.55 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=40.5
Q ss_pred ccccChhhHHHHHhhhccceEEEEEecc---cceEEEcCCHhhHHHHHHHH
Q 000621 1264 QHLFTRDGINLRKSLQQETRTFILFDRH---TLSVKIFGAPDNIAEAQQKL 1311 (1387)
Q Consensus 1264 ~~~~~~~g~~~l~~ie~~~~v~i~~d~~---~~~~rifG~~~~~~~a~~~i 1311 (1387)
+..+=+.+..-+++|++++|+.|..+.. ...+.|.|++++++.|.++|
T Consensus 11 ~~~iIG~~G~~i~~i~~~~g~~I~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 11 HRFIIGKKGSNIRKIMEETGVKIRFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred hhhccCCCCCcHHHHHHHhCCEEEcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 3344455667899999999999999986 68899999999999998876
No 450
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=85.59 E-value=1.6 Score=47.97 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=49.0
Q ss_pred ccCcEEEcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCC
Q 000621 1056 SMDAVVISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPE 1135 (1387)
Q Consensus 1056 ~~~~i~l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~ 1135 (1387)
+..+|+++||+..++|.|+.+.+.+-. .+-.+++.+.+..+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg--~i~rvylardK~TG~------------------------------------ 229 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFG--PITRVYLARDKETGL------------------------------------ 229 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccC--ccceeEEEEccccCc------------------------------------
Confidence 356799999999999999988887655 334555555443332
Q ss_pred CcccceeEEEEe-cccchHHHHHHHHHhcCCc
Q 000621 1136 PKDAFMKAFITF-DGRLHLEAAKALEQLEGKV 1166 (1387)
Q Consensus 1136 ~~d~~~kA~~~F-d~~~~~~a~~al~~l~g~~ 1166 (1387)
.+-=|+|+| +.-| |++|++.|||-.
T Consensus 230 ---~kGFAFVtF~sRdd---A~rAI~~LnG~g 255 (270)
T KOG0122|consen 230 ---SKGFAFVTFESRDD---AARAIADLNGYG 255 (270)
T ss_pred ---ccceEEEEEecHHH---HHHHHHHccCcc
Confidence 334589999 5557 999999999754
No 451
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=85.57 E-value=0.93 Score=39.73 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=36.7
Q ss_pred hhhHHHHHhhhccceEEEEEecccceEEEcCC-HhhHHHHHHHH
Q 000621 1269 RDGINLRKSLQQETRTFILFDRHTLSVKIFGA-PDNIAEAQQKL 1311 (1387)
Q Consensus 1269 ~~g~~~l~~ie~~~~v~i~~d~~~~~~rifG~-~~~~~~a~~~i 1311 (1387)
+.|-.-+++|+.++|+-|..+. ...++|+|+ +++++.|++.|
T Consensus 18 GkgG~~ik~I~~~tg~~I~i~~-~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 18 GPGGKTIKKIIEETGVKIDIED-DGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred CCCchHHHHHHHHHCCEEEeCC-CCEEEEEeCCHHHHHHHHHHh
Confidence 4555789999999999999988 568999999 99999998876
No 452
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=85.53 E-value=0.94 Score=51.23 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
.+.+++|.|++|||||+...+++.+.. ..+.+++++. +.+-..++.++++..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 568899999999999999999887754 3344555543 334455666665543
No 453
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=85.36 E-value=1.2 Score=53.82 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=34.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVRE 219 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~ 219 (1387)
.+.+++|.|++|+|||+.+.+++..... .+.+++++.-. +...|+..+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC-cCHHHHHHHHHH
Confidence 4679999999999999988887765432 24577765432 334455555443
No 454
>PF12846 AAA_10: AAA-like domain
Probab=85.30 E-value=0.8 Score=53.16 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAI 211 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~ 211 (1387)
|.+++|.|+||||||+.+-.++ ......+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~-~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLL-EQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HHHHHcCCCEEEEcCCchHHH
Confidence 4567788999999999766444 333445677888877755443
No 455
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.25 E-value=3.3 Score=53.58 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=72.9
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe-------ccHHHHHHHHHHHHHHHhcCCCCC
Q 000621 158 RQDILRRIY---GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT-------QPRKIAAISLAQRVREESRGCYED 227 (1387)
Q Consensus 158 ~~~i~~~l~---~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~-------~P~r~LA~qla~rv~~~~~~~~~~ 227 (1387)
+..+...+. +.+.++|+||.|+||||.+.++.. . ...+..|..+ .|-|-+ ..+..-+........
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~-~-~~~~~~v~Wlslde~dndp~rF~-~yLi~al~~~~p~~~-- 98 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE-L-AADGAAVAWLSLDESDNDPARFL-SYLIAALQQATPTLG-- 98 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH-h-cCcccceeEeecCCccCCHHHHH-HHHHHHHHHhCcccc--
Confidence 444555554 357999999999999999999874 1 1223344443 344432 233333333221100
Q ss_pred ccEEEecCCCccccCCCcEEEEChhHHHHHhhcCC-CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecc
Q 000621 228 DSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSA 306 (1387)
Q Consensus 228 ~~vg~~~~~~~~~~~~~~Ivv~Tpg~Ll~~l~~~~-~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSA 306 (1387)
.... ... ..+. +..-..+++.+..+- ...+.=++|+|.-| +.-+...-.++-.-+...++++.+|+.|=
T Consensus 99 ~~a~-~l~-------q~~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 99 DEAQ-TLL-------QKHQ-YVSLESLLSSLLNELASYEGPLYLVLDDYH-LISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHH-HHH-------Hhcc-cccHHHHHHHHHHHHHhhcCceEEEecccc-ccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 0000 000 0000 111122333333221 22333589999999 77666665666566666888999999987
Q ss_pred cCC
Q 000621 307 TAD 309 (1387)
Q Consensus 307 Tl~ 309 (1387)
+-+
T Consensus 169 ~rP 171 (894)
T COG2909 169 SRP 171 (894)
T ss_pred cCC
Confidence 733
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=85.01 E-value=0.94 Score=51.45 Aligned_cols=47 Identities=28% Similarity=0.259 Sum_probs=28.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE------eccHHHHHHHH
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC------TQPRKIAAISL 213 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv------~~P~r~LA~ql 213 (1387)
..+.++.|.||.||||||.+ ..+........+.|.+ ..|++++|..+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLL-k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLL-KCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred cCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 46788999999999999943 3343322223444443 45666665444
No 457
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=85.00 E-value=3 Score=46.46 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=45.2
Q ss_pred CeeEEEeecCCCCCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCcee
Q 000621 910 RFLTVDVYHSNANILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEY 981 (1387)
Q Consensus 910 df~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~ 981 (1387)
|=++|++.|-.+. ..|.++...+ ..-|.|.+|+.| ..-.-+.|||++++.|.+| .+.|+.+.
T Consensus 163 ~NtsVY~G~I~~~-lte~~mr~~F--s~fG~I~EVRvF-------k~qGYaFVrF~tkEaAahAIv~mNntei 225 (321)
T KOG0148|consen 163 DNTSVYVGNIASG-LTEDLMRQTF--SPFGPIQEVRVF-------KDQGYAFVRFETKEAAAHAIVQMNNTEI 225 (321)
T ss_pred CCceEEeCCcCcc-ccHHHHHHhc--ccCCcceEEEEe-------cccceEEEEecchhhHHHHHHHhcCcee
Confidence 6788999874443 4444554333 455999999999 3334479999999999998 78888664
No 458
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=84.94 E-value=5.3 Score=47.18 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=29.7
Q ss_pred hhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeec
Q 000621 258 FMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMS 305 (1387)
Q Consensus 258 l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmS 305 (1387)
+...|...+.+++|||||| ++ +......+++.+..-+++..+|+.+
T Consensus 85 ~~~~p~~~~~kv~iI~~ad-~m-~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 85 VNKKPYEGDKKVIIIYNSE-KM-TEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HhcCcccCCceEEEEechh-hc-CHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 3356677889999999999 33 3445566777666544445454443
No 459
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=84.88 E-value=2.2 Score=46.64 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=29.5
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
.+.+-+++++||-- ..+|.+....+.+.+......-+.++++..
T Consensus 126 l~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 126 LVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45667899999999 888887777766666554332344444444
No 460
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.51 E-value=3.1 Score=55.10 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLVQFLAD 191 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~ll~ 191 (1387)
...+++.||+|||||+.+-.+..+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 345777999999999866554433
No 461
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.37 E-value=6.2 Score=47.88 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=24.0
Q ss_pred ceeEEEEcCccccccchhHHHHHHHHHHhcccCc-cEEeeccc
Q 000621 266 RISCIIVDEAHERSLNTDLLLALVKDLLCRRFDL-RLVIMSAT 307 (1387)
Q Consensus 266 ~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~-kiIlmSAT 307 (1387)
++++++||.++...........+...+...+.+- ++|+.|..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 7899999999944444333444444444444333 44444433
No 462
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=84.36 E-value=2.4 Score=55.73 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=72.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHccc--cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCC------
Q 000621 166 YGEQILVLIGETGCGKSTQLVQFLADSGI--AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFS------ 237 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i~~~ll~~~~--~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~------ 237 (1387)
++|-+-|+.-+-|-|||.|.+.++....- +.-+--||++||-.+- .+.-.++++ |.+-....|++...
T Consensus 632 eknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRw---cPglKILTYyGs~kErkeKR 707 (1958)
T KOG0391|consen 632 EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRW---CPGLKILTYYGSHKERKEKR 707 (1958)
T ss_pred HhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhh---CCcceEeeecCCHHHHHHHh
Confidence 45667777889999999986655543221 1223456667885532 233344444 33333445544321
Q ss_pred --ccccCCCcEEEEChhHHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 238 --SAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 238 --~~~~~~~~Ivv~Tpg~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
+..-..-+|.|++...+++-+.. ..-.+..++|||||| +.-+ |.......++..+. -+.++++.|
T Consensus 708 qgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaq-nIKn--fksqrWQAllnfns-qrRLLLtgT 774 (1958)
T KOG0391|consen 708 QGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQ-NIKN--FKSQRWQALLNFNS-QRRLLLTGT 774 (1958)
T ss_pred hcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhh-hhcc--hhHHHHHHHhccch-hheeeecCC
Confidence 11112347888877777654422 134567999999999 3322 22222222333332 345677888
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.33 E-value=2.1 Score=47.01 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~ 187 (1387)
.+++++||+|+||||.+.-
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 6889999999999997643
No 464
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=84.31 E-value=2.4 Score=56.17 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH---HHccccCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCccccCCC
Q 000621 168 EQILVLIGETGCGKSTQLVQFL---ADSGIAAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDS 244 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~~~l---l~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~~~~ 244 (1387)
...++|.|..|||||+.+..-+ ++..-....+|+++.-|+-+|..+.+|+.+..+. ...
T Consensus 17 ~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------------------~~~ 78 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------------------VAE 78 (726)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc------------------ccC
Confidence 3445567999999998755443 3321123458999999999999999999886421 113
Q ss_pred cEEEEChhHHHHHhhcCC-C-CC-ceeEEEEcCcc
Q 000621 245 KVIYMTDHCLLQHFMNDR-D-LS-RISCIIVDEAH 276 (1387)
Q Consensus 245 ~Ivv~Tpg~Ll~~l~~~~-~-l~-~l~~IIIDEaH 276 (1387)
++.++|-..+...+.... . +. .-.+-|+|+.+
T Consensus 79 ~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 79 DIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred CcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 578899877654443321 1 10 12345788776
No 465
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=84.19 E-value=1.3 Score=55.02 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=37.5
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccCC
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD 309 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl~ 309 (1387)
|.+...-.|.-.++.+.|||||| |+.+....+++|.+..-++++.+|+ ||-+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIl--ATTe 158 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFIL--ATTE 158 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEE--ecCC
Confidence 44445556688899999999999 7777888888888766555554444 5543
No 466
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=84.17 E-value=4.3 Score=48.30 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHc
Q 000621 159 QDILRRIYGEQILVLIGETGCGKSTQLVQFLADS 192 (1387)
Q Consensus 159 ~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~ 192 (1387)
+.+..+...+..++|.|++|+||++.+ .++...
T Consensus 13 ~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~~ 45 (329)
T TIGR02974 13 EQVSRLAPLDRPVLIIGERGTGKELIA-ARLHYL 45 (329)
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHH-HHHHHh
Confidence 344445556677888999999999854 444443
No 467
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=83.95 E-value=9.4 Score=44.58 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=66.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEE-----eccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcccc
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVC-----TQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQH 241 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv-----~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~~~ 241 (1387)
..+-+++.||-|||||+-+--.+.+........++| ++.-+.+...++..++.++... ....| .+..
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~--~k~~g---sfte--- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI--VKSFG---SFTE--- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh--heeec---ccch---
Confidence 346666679999999986554444411111112222 2334555566666666665211 11111 1100
Q ss_pred CCCcEEEEChhHHHHHhhcCCCCCce-eEEEEcCccccc--cchhHHHHHHHHHHhcccCccEEeecccCCHH
Q 000621 242 FDSKVIYMTDHCLLQHFMNDRDLSRI-SCIIVDEAHERS--LNTDLLLALVKDLLCRRFDLRLVIMSATADAH 311 (1387)
Q Consensus 242 ~~~~Ivv~Tpg~Ll~~l~~~~~l~~l-~~IIIDEaHer~--~~~d~l~~~lk~l~~~~~~~kiIlmSATl~~~ 311 (1387)
+-..|+..+.++..-... -++|+||+|--. ...-.+..+.......+..+-++++|--+|.-
T Consensus 120 --------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 120 --------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred --------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 113455555555444444 466888988211 12223444455555556667788888777753
No 468
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.91 E-value=0.9 Score=45.17 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=14.8
Q ss_pred eEEEEcCCCCcHHHHHHH
Q 000621 170 ILVLIGETGCGKSTQLVQ 187 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~ 187 (1387)
+++|.|++||||||.+-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478899999999996544
No 469
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=83.88 E-value=34 Score=41.41 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=113.7
Q ss_pred CCcCHHHHHHhhhcccCCccceEEEeccccCCCCCcceEEEEEcChhhHHHH-hhhcCceecCceeEEEeeccc------
Q 000621 922 NILDDKELLMFLEKNASGSICSIHKFAVGQDSDEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKVVPSRAT------ 994 (1387)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v~~~~~~------ 994 (1387)
..+.++.+..++ .--|++.+++.- +.. . .-.-|+|-|.+|.+|.+| .++|...+.|..|.+-+..--
T Consensus 8 ~~v~e~~l~~~f--~~~~~v~s~rvc--~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~~i 81 (369)
T KOG0123|consen 8 PDVTEAMLFDKF--SPAGPVLSIRVC--RDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLVFI 81 (369)
T ss_pred CcCChHHHHHHh--cccCCceeEEEe--ecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCceeee
Confidence 455566666555 333555565554 222 2 455579999999999999 788998888888887654210
Q ss_pred -c-CCC----------CCcCCCCeEEEEEEeeccCCccEEEEEcCCchhH-HHHHhhhhcccCCeeEEEecCccccCcEE
Q 000621 995 -L-GGD----------NKMYTFPAVKAKVYWPRRLSKGFAVVKCDATDVE-FLVKDFFDLAIGGRYVRCEIGRRSMDAVV 1061 (1387)
Q Consensus 995 -~-~g~----------~~~~~~~~~~v~~sW~r~~~~~~~~l~f~~~~~a-~~v~~~~~~~i~~~~v~~~~~~~~~~~i~ 1061 (1387)
. .-+ +....+=++||.+.=.- ++|| .|.|.+++.| ..+...++..+.|+.+.+.+-....+
T Consensus 82 ~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e--- 155 (369)
T KOG0123|consen 82 KNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE--- 155 (369)
T ss_pred cCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh---
Confidence 0 000 01124456666666555 7887 8888888888 44445555677777776643322110
Q ss_pred EcCCCcccCHHHHHhhhhccccccccceeeeecccCCCCChhHHHHHHHHhhcccCcCCCCCCceeEEEecCCCCcccce
Q 000621 1062 ISGLDKELSEDEILGELRKVTTRRIRDLFLVRGDAVECPQFDAFEEALLREISRFMPKRNSHANCCRVQVFPPEPKDAFM 1141 (1387)
Q Consensus 1062 l~~l~~~~~~~di~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~l~~~i~~~~~~~~~~~~~~~v~~~~~~~~d~~~ 1141 (1387)
+.-|. .+ ..-.+ ++ ++-...+.......+..+... .++.....|-..... ...-
T Consensus 156 -r~~~~--~~-~~~~~----t~--------v~vk~~~~~~~~~~l~~~f~~--------~g~i~s~~v~~~~~g--~~~~ 209 (369)
T KOG0123|consen 156 -REAPL--GE-YKKRF----TN--------VYVKNLEEDSTDEELKDLFSA--------YGSITSVAVMRDSIG--KSKG 209 (369)
T ss_pred -hcccc--cc-hhhhh----hh--------hheeccccccchHHHHHhhcc--------cCcceEEEEeecCCC--CCCC
Confidence 00011 11 00000 00 111111111111122223333 222444444444443 3577
Q ss_pred eEEEEecccchHHHHHHHHHhcCCccCCC
Q 000621 1142 KAFITFDGRLHLEAAKALEQLEGKVLPGC 1170 (1387)
Q Consensus 1142 kA~~~Fd~~~~~~a~~al~~l~g~~lp~~ 1170 (1387)
.+++.|+.. -.|..|++.|+|+.+++.
T Consensus 210 ~gfv~f~~~--e~a~~av~~l~~~~~~~~ 236 (369)
T KOG0123|consen 210 FGFVNFENP--EDAKKAVETLNGKIFGDK 236 (369)
T ss_pred ccceeecCh--hHHHHHHHhccCCcCCcc
Confidence 888899552 229999999999998853
No 470
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.85 E-value=1.7 Score=51.15 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHH
Q 000621 151 GLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKI 208 (1387)
Q Consensus 151 ~lP~~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~ 208 (1387)
..+...+..-+..++..+..++++|+|||||||.+-..+. ......+++.+--+.+
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~--~Ip~~~rivtIEdt~E 181 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLD--FIPPEERIVTIEDTPE 181 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHH--hCCchhcEEEEecccc
Confidence 3444456666888999999999999999999997655442 2344557777655544
No 471
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.84 E-value=0.93 Score=51.20 Aligned_cols=40 Identities=5% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 164 RIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 164 ~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
-+..+++++|.|+||+|||+.+.+++.......+..++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~ 48 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFF 48 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 3456789999999999999988888776544434566655
No 472
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=83.80 E-value=2.9 Score=43.34 Aligned_cols=82 Identities=18% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCHhhhhhhhccC-C-CceEEEEecchhhcCCCCCC--ceEEEecCCCccccccCCCC--cccc-----------eeccc
Q 000621 401 LSFDEQFCVFKSY-P-GRRKVIFATNVAETSLTIPG--VKFVIDSGMVKESYFEPGTG--MNVL-----------RVCRV 463 (1387)
Q Consensus 401 l~~~er~~v~~~f-~-g~~kVLVaT~iae~GIdIp~--V~~VId~g~~k~~~yd~~~~--~~~L-----------~~~~i 463 (1387)
....+...+++.| . +...||++|.-+..|||+|+ ++.||-.|+|-....||... +..+ ...|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 3344456677777 3 33479999988999999987 57888888885433333211 1100 01122
Q ss_pred CHhhHHHHhcccCCCCCCe
Q 000621 464 SQSSANQRAGRAGRTEPGR 482 (1387)
Q Consensus 464 S~a~~~QR~GRaGR~~~G~ 482 (1387)
..-...|-+||+=|...-.
T Consensus 111 a~~~l~Qa~GR~iR~~~D~ 129 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDY 129 (141)
T ss_pred HHHHHHHHhCccccCcCce
Confidence 3356789999999976333
No 473
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.80 E-value=1.9 Score=50.95 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeeccc
Q 000621 254 LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSAT 307 (1387)
Q Consensus 254 Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSAT 307 (1387)
+.+.+...+..+.++++|||+|| + ++.....+++|.+..-+++.-+|+.|..
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae-~-m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPAD-A-MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHhhCcccCCceEEEecchh-h-hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34445555677889999999999 3 3455677778877665555555554443
No 474
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.65 E-value=4.1 Score=51.08 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCCcHHHHHH
Q 000621 168 EQILVLIGETGCGKSTQLV 186 (1387)
Q Consensus 168 ~~vviI~a~TGSGKTt~i~ 186 (1387)
...+++.||+|+|||+.+-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4567779999999998543
No 475
>PRK05973 replicative DNA helicase; Provisional
Probab=83.64 E-value=1.2 Score=50.33 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 159 QDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 159 ~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
+.+..-+..++.++|.|++|+|||+...+++.+... .+.+++++. .-+-..++.+++...
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 445566678899999999999999998888876543 344555542 222234666666544
No 476
>smart00361 RRM_1 RNA recognition motif.
Probab=83.59 E-value=3.5 Score=37.02 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=36.1
Q ss_pred CCccceEEEeccccCC--CCCcceEEEEEcChhhHHHH-hhhcCceecCceeEE
Q 000621 938 SGSICSIHKFAVGQDS--DEKDKWGRVTFLTPDTAGKA-TELNGVEYNGSLLKV 988 (1387)
Q Consensus 938 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~p~~a~~~-~~~~~~~~~~~~l~v 988 (1387)
-|.+.+++++...... ......|.|+|.+++.|.+| ..+++..+.|..|++
T Consensus 16 fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 16 FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3667777533111111 23345579999999999999 689999999999875
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.49 E-value=1.6 Score=54.79 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=36.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
.+.+++|.||+|+|||+...+++.+... .+.+++++. .-+...|+..+....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 4678999999999999999999876533 344555542 445556777776543
No 478
>CHL00176 ftsH cell division protein; Validated
Probab=83.48 E-value=5.3 Score=51.68 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 000621 169 QILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 169 ~vviI~a~TGSGKTt~i~~~l 189 (1387)
..+++.||+|+|||+.+-...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 457889999999998654443
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.41 E-value=1.4 Score=48.98 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.2
Q ss_pred hcCCeEEEEcCCCCcHHHHH
Q 000621 166 YGEQILVLIGETGCGKSTQL 185 (1387)
Q Consensus 166 ~~~~vviI~a~TGSGKTt~i 185 (1387)
..++++.|.||.||||||.+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLl 30 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLT 30 (213)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999954
No 480
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=83.30 E-value=1.7 Score=51.54 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEe
Q 000621 253 CLLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVI 303 (1387)
Q Consensus 253 ~Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIl 303 (1387)
.+.+.+...+.....+++|||++| .++......+++.+....++..+|+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEE
Confidence 345556666677889999999999 5666677777776655444444444
No 481
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.21 E-value=2.7 Score=55.00 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHhcC-CCCceEeccCCCCHhhhhhhhccC-CCceEEEEecchhhcCCCCCCceEEE
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDA-PSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVI 439 (1387)
Q Consensus 366 ~~g~iLVF~~s~~eie~l~~~L~~-~~~~v~~lh~~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VI 439 (1387)
.++++||.+|+++-+.++++.|++ .+..+..+||+++..+|.+.+... .|..+|+|+|.-+-. +.+.++.+||
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 367899999999999999988875 467899999999999999888877 788899999975432 5567777776
No 482
>PHA00350 putative assembly protein
Probab=83.16 E-value=3 Score=50.51 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEe
Q 000621 170 ILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCT 203 (1387)
Q Consensus 170 vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~ 203 (1387)
+.+++|..|||||.-++.+........+ +.+++
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~G-R~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDG-RKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCC-CEEEE
Confidence 5678999999999987764333323333 45553
No 483
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.14 E-value=6.4 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.825 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 000621 167 GEQILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ 188 (1387)
.++++++.||+|+||||.+-.+
T Consensus 109 ~~~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3467899999999999965443
No 484
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=82.92 E-value=2 Score=43.31 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHH
Q 000621 158 RQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRK 207 (1387)
Q Consensus 158 ~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r 207 (1387)
.+.+-..+..++++++.|+-|+||||-+-.++...+. .. -+..||=
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~--~~--~V~SPTF 50 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI--DE--EVTSPTF 50 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT----S------TTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC--CC--CcCCCCe
Confidence 4566777889999999999999999965443332221 11 5566763
No 485
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=82.88 E-value=4.1 Score=44.27 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=26.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEec
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~ 204 (1387)
....+.|.+++|-|||+++....+.. ...+.+|+++|
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra-~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA-VGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEE
Confidence 44566667899999999877666554 34456777765
No 486
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=82.85 E-value=2.4 Score=49.65 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=32.8
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCc-cEEeecccC
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDL-RLVIMSATA 308 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~-kiIlmSATl 308 (1387)
.+.+-+++|+||-= ..+|......+...+......- .+|++|--.
T Consensus 151 L~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~ 196 (293)
T COG1131 151 LLHDPELLILDEPT-SGLDPESRREIWELLRELAKEGGVTILLSTHI 196 (293)
T ss_pred HhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence 46677999999998 8888887777777777665544 466665443
No 487
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.82 E-value=2.4 Score=49.67 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHH-HHHHcCceeccCCccccCHHHHH
Q 000621 536 AIEMAIR-NLVQLGAIKLNNGVFELTEEGKF 565 (1387)
Q Consensus 536 ~l~~al~-~L~~lgal~~~~~~~~lT~lG~~ 565 (1387)
.+...++ .|...|+|...+.+...|+.|..
T Consensus 271 ~~~~~~e~~Li~~~li~~~~~g~~~~~~~~~ 301 (305)
T TIGR00635 271 TIEDVYEPYLLQIGFLQRTPRGRIATELAYE 301 (305)
T ss_pred hHHHhhhHHHHHcCCcccCCchhhhhHHHHH
Confidence 4566667 68888888655545567777764
No 488
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.74 E-value=2.4 Score=53.13 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=23.2
Q ss_pred HHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHH
Q 000621 157 YRQDILRRIYG-EQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 157 q~~~i~~~l~~-~~vviI~a~TGSGKTt~i~~~l 189 (1387)
+.+.+..++.. +..++|+|||||||||.+-.++
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L 263 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLYAAL 263 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 44455555554 4578899999999999765444
No 489
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.72 E-value=2.1 Score=51.15 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHH
Q 000621 157 YRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIA 209 (1387)
Q Consensus 157 q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~L 209 (1387)
+..-+..++..+.+++|+|+|||||||.+-. +... .....+++++.-+.|+
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~a-l~~~-i~~~~riv~iEd~~El 217 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSA-LLAL-VAPDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHH-HHcc-CCCCCcEEEECCccee
Confidence 3344455567788999999999999996643 3332 2344577777766665
No 490
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=82.72 E-value=10 Score=45.10 Aligned_cols=131 Identities=12% Similarity=0.057 Sum_probs=52.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHccccCC--CeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEEecCCCcc--ccCCCcEE
Q 000621 172 VLIGETGCGKSTQLVQFLADSGIAAE--QSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSA--QHFDSKVI 247 (1387)
Q Consensus 172 iI~a~TGSGKTt~i~~~ll~~~~~~~--~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~~~~~~~~--~~~~~~Iv 247 (1387)
++.|+.|+|||+.+...++....... ..+++...+..++..+.........-................ ...+..|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 35689999999986665555443333 466666444445544333222221111111112111111111 12345566
Q ss_pred EEChhH--HHHHhhcCCCCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEeecccC
Q 000621 248 YMTDHC--LLQHFMNDRDLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIMSATA 308 (1387)
Q Consensus 248 v~Tpg~--Ll~~l~~~~~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlmSATl 308 (1387)
+.+.+. -...+.. ..++.|++||+-. ..+ +.....+............+..|-|.
T Consensus 81 ~~~~~~~~~~~~~~G----~~~~~i~iDE~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 81 FRGADSPDSGDNIRG----FEYDLIIIDEAAK-VPD-DAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EES-----SHHHHHT----S--SEEEEESGGG-STT-HHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred Eeccccccccccccc----cccceeeeeeccc-Cch-HHHHHHHHhhhhcccCcceEEeecCC
Confidence 666322 1122222 4678999999862 222 33333444443333333333445443
No 491
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=82.70 E-value=1.3 Score=52.28 Aligned_cols=21 Identities=52% Similarity=0.918 Sum_probs=17.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHH
Q 000621 165 IYGEQILVLIGETGCGKSTQL 185 (1387)
Q Consensus 165 l~~~~vviI~a~TGSGKTt~i 185 (1387)
+..+..+++.||+||||||.+
T Consensus 26 i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 346788888999999999953
No 492
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=82.65 E-value=6 Score=52.18 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=27.6
Q ss_pred CCCceeEEEEcCccccccchhHHHHHHHHHHhcccCccEEee
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 263 ~l~~l~~IIIDEaHer~~~~d~l~~~lk~l~~~~~~~kiIlm 304 (1387)
.+++-+++|+||+= -.+|......+.+.+....++.-+|+.
T Consensus 616 ll~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiI 656 (694)
T TIGR03375 616 LLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLV 656 (694)
T ss_pred HhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46677889999997 677777766666666655544444443
No 493
>PRK13763 putative RNA-processing protein; Provisional
Probab=82.62 E-value=3.8 Score=44.30 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=81.2
Q ss_pred ChhhHHHHHhhhccceEEEEEecccceEEEc----CCHhhHHHHHHHHHHHHHh--------hcc--cccEEEEecCCCC
Q 000621 1268 TRDGINLRKSLQQETRTFILFDRHTLSVKIF----GAPDNIAEAQQKLIQSLLT--------YHE--SKQLEIHLRGGVL 1333 (1387)
Q Consensus 1268 ~~~g~~~l~~ie~~~~v~i~~d~~~~~~rif----G~~~~~~~a~~~i~~~l~~--------~~~--~~~~~I~L~~~~~ 1333 (1387)
=+.|..-++.|+.++|+-|..|.....+.|+ +.++.+..|++.|.+++.. +.. -...+|.+.+-.-
T Consensus 18 IG~gGk~Ik~I~e~tg~~I~i~~~~g~V~I~~~~~~d~~~i~kA~~~I~ai~~gf~~e~A~~l~gd~y~~~Vi~i~~~~~ 97 (180)
T PRK13763 18 IGKKGETKKEIEERTGVKLEIDSETGEVIIEPTDGEDPLAVLKARDIVKAIGRGFSPEKALRLLDDDYVLEVIDLSDYGD 97 (180)
T ss_pred hccchhHHHHHHHHHCcEEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCceEEEEEhhhccC
Confidence 3456788999999999999999988999998 8999999999999988651 011 1223455543211
Q ss_pred C----CchHHHHHHhhCCCchhhhhcCCCceEEeecceeEEEEecchhhhh
Q 000621 1334 P----PDLMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGDRELKQ 1380 (1387)
Q Consensus 1334 ~----~g~~k~~v~~~G~dl~~l~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 1380 (1387)
. +.....|.++.|.-+..|++..+ |.+.++. +.+.+.|+-+...
T Consensus 98 ~~~~~~r~~griIG~~G~~~k~ie~~t~-~~i~i~~--~~v~i~G~~~~~~ 145 (180)
T PRK13763 98 SPNALRRIKGRIIGEGGKTRRIIEELTG-VDISVYG--KTVAIIGDPEQVE 145 (180)
T ss_pred ChhHHHHHhhheeCCCcHHHHHHHHHHC-cEEEEcC--CEEEEEeCHHHHH
Confidence 1 23567788888988888888887 8887775 4488999877654
No 494
>PRK06904 replicative DNA helicase; Validated
Probab=82.43 E-value=3.7 Score=51.29 Aligned_cols=68 Identities=10% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCc-HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHccccCCCeEEEeccHHHHHHHHHHHHHHH
Q 000621 152 LPI-YMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQRVREE 220 (1387)
Q Consensus 152 lP~-~~q~~~i~~~l~~~~vviI~a~TGSGKTt~i~~~ll~~~~~~~~~Ilv~~P~r~LA~qla~rv~~~ 220 (1387)
+|+ +..-+.+..-+..++.++|.|.||.|||+.+..++.......+..|++.. .-..+.|+..|+-..
T Consensus 204 i~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS-lEMs~~ql~~Rlla~ 272 (472)
T PRK06904 204 VTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS-LEMPAEQIMMRMLAS 272 (472)
T ss_pred ccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe-ccCCHHHHHHHHHHh
Confidence 444 34455566778889999999999999999876666544332344565542 224455666665543
No 495
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=11 Score=44.40 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=29.8
Q ss_pred ccccccccCCccccccHHHHHHHHHhccCCCcHHHHHHHHHHH--hcCCeEEEEcCCCCcHHHHH
Q 000621 123 VFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRI--YGEQILVLIGETGCGKSTQL 185 (1387)
Q Consensus 123 ~~~f~~lg~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~i~~~l--~~~~vviI~a~TGSGKTt~i 185 (1387)
-.+|++.| -....+++++.. -.||+ -.-++...+ ..-.-+++-||+|+|||+.+
T Consensus 147 dvtY~dIG------GL~~Qi~EirE~-VELPL--~~PElF~~~GI~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 147 DVTYEDIG------GLDEQIQEIREV-VELPL--KNPELFEELGIDPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCChhhcc------CHHHHHHHHHHH-hcccc--cCHHHHHHcCCCCCCceEeeCCCCCcHHHHH
Confidence 34565555 233444444431 24554 233333333 33466777899999999754
No 496
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=82.23 E-value=4.7 Score=43.26 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=80.8
Q ss_pred hhhHHHHHhhhccceEEEEEecccceEEE---cCCHhhHHHHHHHHHHHHHh--------hcc--cccEEEEecCCCCCC
Q 000621 1269 RDGINLRKSLQQETRTFILFDRHTLSVKI---FGAPDNIAEAQQKLIQSLLT--------YHE--SKQLEIHLRGGVLPP 1335 (1387)
Q Consensus 1269 ~~g~~~l~~ie~~~~v~i~~d~~~~~~ri---fG~~~~~~~a~~~i~~~l~~--------~~~--~~~~~I~L~~~~~~~ 1335 (1387)
+.|-+-++.|+.++|+-|..|.....++| -+.++.+..|++.|.++... +.. -...+|.+..-...+
T Consensus 14 G~gG~~Ik~I~~~tgv~I~Id~~~g~V~I~~~t~d~~~i~kA~~~I~~i~~gf~~e~A~~l~gd~y~~~Vi~I~~~~~~~ 93 (172)
T TIGR03665 14 GKGGETKKEIEERTGVKLDIDSETGEVKIEEEDEDPLAVMKAREVVKAIGRGFSPEKALKLLDDDYMLEVIDLKEYGKSP 93 (172)
T ss_pred CCchhHHHHHHHHhCcEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHcCCCHHHHHHhcCCcceEEEEEhhhccCCH
Confidence 35668899999999999999998788999 57889999999999887551 111 222345554432233
Q ss_pred c----hHHHHHHhhCCCchhhhhcCCCceEEeecceeEEEEecchhhhhh
Q 000621 1336 D----LMKEVVRRFGPDLQGLKEKVPGAEFSLNTRRHVISVHGDRELKQK 1381 (1387)
Q Consensus 1336 g----~~k~~v~~~G~dl~~l~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 1381 (1387)
. ....|.++.|.-+..|++..+ |.+.+.- +.+.|.|+-+..+.
T Consensus 94 ~~~~~~~griIG~~G~t~~~ie~~t~-~~i~i~~--~~v~i~G~~~~~~~ 140 (172)
T TIGR03665 94 NALRRIKGRIIGEGGKTRRIIEELTG-VSISVYG--KTVGIIGDPEQVQI 140 (172)
T ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHC-CeEEEcC--CEEEEECCHHHHHH
Confidence 3 566677788888888888886 7777664 78999998776543
No 497
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=82.21 E-value=7.8 Score=50.25 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=71.6
Q ss_pred EcCCCCcHHHHHHHHHHHccc---cCCCeEEEeccHHHHHHHHHHHHHHHhcCCCCCccEEE-----ecCCCcc------
Q 000621 174 IGETGCGKSTQLVQFLADSGI---AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVIC-----YPSFSSA------ 239 (1387)
Q Consensus 174 ~a~TGSGKTt~i~~~ll~~~~---~~~~~Ilv~~P~r~LA~qla~rv~~~~~~~~~~~~vg~-----~~~~~~~------ 239 (1387)
.---|-|||+|++.++..... ..-.++||++|.-.+ ..++..|.+.+.+......+-. +.+.+..
T Consensus 702 AHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~ 780 (1567)
T KOG1015|consen 702 AHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQR 780 (1567)
T ss_pred HHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHH
Confidence 345689999998877754322 223589999998653 4667777777654221111111 1110100
Q ss_pred ccCCCcEEEEChhHHHHHhhcCC--------------CCCceeEEEEcCccccccchhHHH-HHHHHHHhcccCccEEee
Q 000621 240 QHFDSKVIYMTDHCLLQHFMNDR--------------DLSRISCIIVDEAHERSLNTDLLL-ALVKDLLCRRFDLRLVIM 304 (1387)
Q Consensus 240 ~~~~~~Ivv~Tpg~Ll~~l~~~~--------------~l~~l~~IIIDEaHer~~~~d~l~-~~lk~l~~~~~~~kiIlm 304 (1387)
-....-|.++-..++-.+.+... .-..-++||.||+| -.-+.+... ..+..+.. -+.|++
T Consensus 781 W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~H-iLKNeksa~Skam~~irt----kRRI~L 855 (1567)
T KOG1015|consen 781 WQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGH-ILKNEKSAVSKAMNSIRT----KRRIIL 855 (1567)
T ss_pred HHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchh-hhccchHHHHHHHHHHHh----heeEEe
Confidence 00123455555554432222111 12245899999999 444433221 11222222 245788
Q ss_pred cccCCHHHHHHHh
Q 000621 305 SATADAHQLSKYF 317 (1387)
Q Consensus 305 SATl~~~~~~~~f 317 (1387)
|.|+=...+.+|.
T Consensus 856 TGTPLQNNLmEY~ 868 (1567)
T KOG1015|consen 856 TGTPLQNNLMEYH 868 (1567)
T ss_pred ecCchhhhhHHHH
Confidence 8997666666664
No 498
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.92 E-value=1.9 Score=46.76 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=33.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHcccc---------CCCeEEEeccHHHHHHHHHHHHHHHh
Q 000621 167 GEQILVLIGETGCGKSTQLVQFLADSGIA---------AEQSIVCTQPRKIAAISLAQRVREES 221 (1387)
Q Consensus 167 ~~~vviI~a~TGSGKTt~i~~~ll~~~~~---------~~~~Ilv~~P~r~LA~qla~rv~~~~ 221 (1387)
.++.++|.|++|+|||+.+.+++.....+ .+.+|+++..--. ..++.+++....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 57889999999999999877777654321 3457777643322 445666666654
No 499
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.85 E-value=5.5 Score=53.67 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=27.4
Q ss_pred HHhccCCCcHHHHHHHHHHHh-----cCCeEEEEcCCCCcHHHHHHHH
Q 000621 146 KRLEDGLPIYMYRQDILRRIY-----GEQILVLIGETGCGKSTQLVQF 188 (1387)
Q Consensus 146 ~~~~~~lP~~~q~~~i~~~l~-----~~~vviI~a~TGSGKTt~i~~~ 188 (1387)
.+-+..-|+.-+..+|-..+. ...+.++.||+|+|||+.+-.+
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence 334444566555555555553 3467777899999999865443
No 500
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=81.71 E-value=2.7 Score=43.03 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHH
Q 000621 159 QDILRRIYGEQILVLIGETGCGKSTQLVQFL 189 (1387)
Q Consensus 159 ~~i~~~l~~~~vviI~a~TGSGKTt~i~~~l 189 (1387)
+.+-..+..++++++.|+.|+||||.+-.++
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~ 43 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLL 43 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4455666788999999999999999654433
Done!