Query 000621
Match_columns 1387
No_of_seqs 598 out of 4265
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 16:34:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000621.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_394-397//hhsearch_pdb/000621hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 883.6 62.0 643 119-791 67-731 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 498.8 37.2 529 122-677 6-625 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 471.4 35.6 518 137-677 10-604 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 460.5 35.4 526 125-677 2-614 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 386.2 25.8 250 522-793 4-254 (270)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 379.0 34.6 446 149-607 76-629 (1724)
7 4f92_B U5 small nuclear ribonu 1.0 1 1 376.5 36.3 468 128-607 902-1460(1724)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 368.0 23.8 334 137-490 169-597 (1108)
9 2db3_A ATP-dependent RNA helic 1.0 1 1 362.8 34.7 335 117-490 49-407 (434)
10 3fmp_B ATP-dependent RNA helic 1.0 1 1 362.5 23.3 341 122-491 90-447 (479)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=883.63 Aligned_cols=643 Identities=34% Similarity=0.559 Sum_probs=566.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCC--
Q ss_conf 674555532236775000029999999970159990999999999982499699994899918999999999705667--
Q 000621 119 ANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAA-- 196 (1387)
Q Consensus 119 ~~~~~~~f~~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~-- 196 (1387)
.+.+..+|++++ +++.+.+.+...+ .+|++.|+.+|+.++.++++++++||||||||+++|+++++.....
T Consensus 67 ~~~~~~~f~~~~------l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~ 139 (773)
T 2xau_A 67 EDGKINPFTGRE------FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE 139 (773)
T ss_dssp HHSSBCTTTCSB------CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCCCC------CCHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 567788820269------8989999999866-189599999999999679839998899889999999999974001589
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf 88199806489999999999999833888885079723888656699819998906789976238877850299981732
Q 000621 197 EQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDRDLSRISCIIVDEAH 276 (1387)
Q Consensus 197 ~~~ilv~~P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~Iiv~Tpg~Ll~~l~~~~~l~~l~~IVIDEaH 276 (1387)
+..++|++|+|++|.|++++++.+++ ...+..+|+..+++......++|+++|||++++.+..+..+.++++||+||+|
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHC-CCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 96588618569999999999999848-84532566222445455889877998999999997428443577889954701
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 03322017999999997315576389624567989999873049845450531103799714887787420000788999
Q 000621 277 ERSLNTDLLLALVKDLLCRRFDLRLVIMSATADAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVASYVSDVVR 356 (1387)
Q Consensus 277 eR~~~~d~l~~~lk~l~~~~~~~kiIllSAT~~~~~l~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1387)
+|+++.+++..+++.+...+++.++++||||++.+.+++||.+++++.++++.+|++++|.+... .++....+.
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~------~~~~~~~l~ 292 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQ------RDYLDSAIR 292 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCC------SCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC------HHHHHHHHH
T ss_conf 03645589999999998748786299994335689999984689854536865553889806882------459999999
Q ss_pred HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCC-----------CCCCEEECCCCCCHHHHHHHHCCC------CCCEEE
Q ss_conf 999855016898199993888899999998139-----------999268305999986566663039------996399
Q 000621 357 MVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA-----------PSAVALPFHGQLSFDEQFCVFKSY------PGRRKV 419 (1387)
Q Consensus 357 ~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~-----------~~~~v~~lhs~l~~~er~~v~~~f------~g~~kV 419 (1387)
.+..++....++++||||+++.+++.++..|.. .++.+.++||+|++++|.++++.| +|.++|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 99999972689998998998999999999999988763134567975999807899999999998526434578883499
Q ss_pred EEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCEEEEEECCCCC-CCCCCC
Q ss_conf 9934111017777990099963898643336898842110102588439998601199999859994241000-259999
Q 000621 420 IFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTEPGRCYRLYSKSDF-ETRPLN 498 (1387)
Q Consensus 420 LVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~~G~c~~L~t~~~~-~~~~~~ 498 (1387)
||||+++|+|||||+|++|||+|+++...|||..|++.|.+.|+|+++|.||+|||||.++|.||+||++.++ ..+.++
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSS
T ss_pred EEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCC
T ss_conf 99676798476768737999479722122256668320330017999998653444789998799996378840123016
Q ss_pred CCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 98201305658999999982998877765459880999999999998808641558833569889996603887255798
Q 000621 499 QEPEIHRVHLGIAVLRILALGIRDVQGFDFIDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKL 578 (1387)
Q Consensus 499 ~~pEi~r~~L~~~~L~l~~lgi~~~~~f~~l~~P~~~~i~~al~~L~~lgai~~~~~~~~lT~lG~~~a~lpl~p~~~k~ 578 (1387)
..|||++.+|.+++|.++++|+.++..|+|++||+.+++..|++.|..+||||.++ .+|++|+.|+.+|++|++|||
T Consensus 453 ~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~---~lT~lG~~~a~~pl~p~~~~~ 529 (773)
T 2xau_A 453 SYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEG---NLTPLGRLASQFPLDPMLAVM 529 (773)
T ss_dssp CCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTS---CBCHHHHHHTTSSSCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHCCCCCCHHHHHH
T ss_conf 89753347589999999984999723243557985999999999999768765578---868305642433688899999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC-CC-HHHHHHC
Q ss_conf 999752045279999967721778755446895266699986631038999689999999997108932-10-1226521
Q 000621 579 ILSCFRRRLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPRE-ER-NKWCWEN 656 (1387)
Q Consensus 579 ll~~~~~~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gD~ltll~vy~~~~~~~~~-~~-~~wC~~n 656 (1387)
|+.+..++|++++++|||+|+ .+++|.++ .+.+++++.++..|.+..|||++++++|++|...... .. .+||++|
T Consensus 530 l~~~~~~~c~~~~l~i~a~ls-~~~~f~~~--~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~ 606 (773)
T 2xau_A 530 LIGSFEFQCSQEILTIVAMLS-VPNVFIRP--TKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDH 606 (773)
T ss_dssp HHHGGGGTCHHHHHHHHHHHT-SCCCBCCC--TTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHCC-CCCCCCCC--HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 986212474168999999603-68855187--478999999998506889859999999999987022210689999983
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCEEE
Q ss_conf 68788899999989999999998633225764458999994016999999999410011323077877718942596199
Q 000621 657 SVNAKSLRRCQDTIKELETCLEKELAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQ 736 (1387)
Q Consensus 657 ~Ls~~~l~~~~~~~~QL~~~L~~el~~~~~~~~~~~~~~~~~~~~~i~~~l~agf~~nvA~~~~~~~~gy~~~~~~~~v~ 736 (1387)
|||+++|+++.+++.||..++. .+++...+. +. ....++..++++||+|||+|||++... +.+|.++.+++.|+
T Consensus 607 ~l~~~~l~~~~~~~~ql~~~~~-~~~~~~~~~---~~-~~~~~~~~i~~~l~~g~~~~~a~~~~~-~~~y~~~~~~~~~~ 680 (773)
T 2xau_A 607 YLNYRSLSAADNIRSQLERLMN-RYNLELNTT---DY-ESPKYFDNIRKALASGFFMQVAKKRSG-AKGYITVKDNQDVL 680 (773)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHH-HTTCCCCCC---CT-TSTTHHHHHHHHHHHHHTTSEEEECCC---CEEETTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCC---CC-CCHHHHHHHHHHHHHHCHHHHEEECCC-CCCCEEEECCCEEE
T ss_conf 8899999999999999999987-428875777---77-732069999999998673755143467-87415733797799
Q ss_pred ECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 8999943235999989999985113221221112219543721179982024410
Q 000621 737 LHPSCSLLIFGQKPTWVVFGELLSVNNQYLVCVTAFDFDSLSTLCPSPLFDVSMM 791 (1387)
Q Consensus 737 IHPSS~L~~~~~~p~~vvy~elv~tsk~yl~~vt~I~~~wL~~~~~~~~~~~s~~ 791 (1387)
|||+|+| ...|+||||+|++.|++.||+++|+|+|+||.+++| ++|..+.+
T Consensus 681 ihp~s~l---~~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~-~~~~~~~~ 731 (773)
T 2xau_A 681 IHPSTVL---GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAP-AYYDLSNF 731 (773)
T ss_dssp ECTTCCC---CTTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCT-TTSCGGGC
T ss_pred ECCCCCC---CCCCCEEEEEEEECCCHHHEEECCCCCHHHHHHHHH-HHEEECCC
T ss_conf 8898646---799898999986202442424416079999999878-76220417
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=498.75 Aligned_cols=529 Identities=16% Similarity=0.126 Sum_probs=385.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 55553223677500002999999997015999099999999998249969999489991899999999970566788199
Q 000621 122 DVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIV 201 (1387)
Q Consensus 122 ~~~~f~~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~~~~il 201 (1387)
...+|++++ +++.+.+.+.+.++..|.+.|++++..++..+++++++||||||||+++++++++.....+++++
T Consensus 6 ~~~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il 79 (715)
T 2va8_A 6 EWMPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAI 79 (715)
T ss_dssp CCCBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEE
T ss_pred CCCCHHHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 557198769------99999999986799879999999999986489948998489875999999999999997798499
Q ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECC----CCCCCCCCCCEEEECHHHHHHHHHCCC-CCCCEEEEEECCCC
Q ss_conf 8064899999999999998338888850797238----886566998199989067899762388-77850299981732
Q 000621 202 CTQPRKIAAISLAQRVREESRGCYEDDSVICYPS----FSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAH 276 (1387)
Q Consensus 202 v~~P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~----~~~~~~~~~~Iiv~Tpg~Ll~~l~~~~-~l~~l~~IVIDEaH 276 (1387)
|++|+|+||.|+++++.... .. +..++...+ .+.. ...++|+|+|||+|.+.+..++ .+.++++||+||+|
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~--g~~v~~~~G~~~~~~~~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LI--GFKVAMTSGDYDTDDAW-LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GG--TCCEEECCSCSSSCCGG-GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEECCHHHHHHHHHHHHHHH-CC--CCEEEEEECCCCCCHHH-CCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHH
T ss_conf 99085999999999998765-27--98899984897776201-3799999985899999996785576436989995355
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCC--------C--C
Q ss_conf 033220179999999973155763896245679-8999987304984545053110379971488778--------7--4
Q 000621 277 ERSLNTDLLLALVKDLLCRRFDLRLVIMSATAD-AHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAG--------T--S 345 (1387)
Q Consensus 277 eR~~~~d~l~~~lk~l~~~~~~~kiIllSAT~~-~~~l~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~--------~--~ 345 (1387)
+ ..+.++...+ +.+....++.|+|+||||++ .+.+++|+. ++.+...++.+|+...+....... . .
T Consensus 156 ~-l~~~~~~~~l-~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 156 Y-LNDPERGPVV-ESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp G-GGCTTTHHHH-HHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred H-CCCCCCCHHH-HHHHHHCCCCCEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHH
T ss_conf 5-2786622299-999986536728997178799999999849-974579999887468888358766540465276044
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCC----------------------------------
Q ss_conf 2000078899999985501689819999388889999999813999----------------------------------
Q 000621 346 AVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPS---------------------------------- 391 (1387)
Q Consensus 346 ~~~~~~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~~---------------------------------- 391 (1387)
............+.+.+ ..++++||||+++++++.++..|....
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 32134438999999998--6699779997988999999999999876542886778999999998663455322999999
Q ss_pred --CCEEECCCCCCHHHHHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHH
Q ss_conf --9268305999986566663039-9963999934111017777990099963898643336898842110102588439
Q 000621 392 --AVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSA 468 (1387)
Q Consensus 392 --~~v~~lhs~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~ 468 (1387)
..+.++||+|++++|..+++.| +|.++|||||+++++|||+|++++||+. ...||++.+.. ..|+|.++|
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~ 383 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEY 383 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHH
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHH
T ss_conf 96687887899999999999999986998599978087661688854999918----75644667778---775999999
Q ss_pred HHHHCCCCCCC---CCEEEEEECCCC-CCC---CCCCCCCCHHCCCHHH------HHHHHHHCCCC----CCCCC---CC
Q ss_conf 99860119999---985999424100-025---9999982013056589------99999982998----87776---54
Q 000621 469 NQRAGRAGRTE---PGRCYRLYSKSD-FET---RPLNQEPEIHRVHLGI------AVLRILALGIR----DVQGF---DF 528 (1387)
Q Consensus 469 ~QR~GRAGR~~---~G~c~~L~t~~~-~~~---~~~~~~pEi~r~~L~~------~~L~l~~lgi~----~~~~f---~~ 528 (1387)
.||+|||||.| +|.||++++..+ +.. ......||+.++++.. .+|.+.+.|.- ++..| .|
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~ 463 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESL 463 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSS
T ss_pred HHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99842427998888756999967806799999999708998735337866679999999985156688999999998507
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH---CCHHHHHHHHHHHCCCCCC
Q ss_conf 59-8809999999999988086415588335698899966038872557989997520---4527999996772177875
Q 000621 529 ID-APSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR---RLGREGLVLAAVMANASSI 604 (1387)
Q Consensus 529 l~-~P~~~~i~~al~~L~~lgai~~~~~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~---~c~~~~l~iaA~l~~~~~~ 604 (1387)
+. +|+...+..+++.|..+|+|+.+++.+.+|++|+.|+.+|++|+++++++.+... .|..+++.|+|+.+..+++
T Consensus 464 ~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~ 543 (715)
T 2va8_A 464 LAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLV 543 (715)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCC
T ss_pred HHHHCCHHHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 87642638899999999888497666986866768999999748986799999986542578789999995268433457
Q ss_pred CCCCCCCHHHHHHHHHHHH-----HCC-CCC--------CHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 5446895266699986631-----038-999--------68999999999710893210122652168788899999989
Q 000621 605 FCRVGSDDEKIKADCLKVQ-----FCH-RNG--------DLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTI 670 (1387)
Q Consensus 605 f~~~~~~~~~~~~~~~~~~-----f~~-~~g--------D~ltll~vy~~~~~~~~~~~~~wC~~n~Ls~~~l~~~~~~~ 670 (1387)
+.++. +++........ +.. +.. .++-..-+.++|.+ ......+|..+.+...-|..+.+..
T Consensus 544 ~~r~~---e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~--~~~~~~i~~~y~~~~gdl~~l~~~a 618 (715)
T 2va8_A 544 SVGRN---EEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMD--EVDEDTILSKYNIGSGDLRNMVETM 618 (715)
T ss_dssp CCCHH---HHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHH---HHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 64867---899999999852111113666543102345777999999999984--9987899999789824499999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000621 671 KELETCL 677 (1387)
Q Consensus 671 ~QL~~~L 677 (1387)
..|...+
T Consensus 619 ~~l~~a~ 625 (715)
T 2va8_A 619 DWLTYSA 625 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=471.44 Aligned_cols=518 Identities=19% Similarity=0.203 Sum_probs=365.6
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 02999999997015999099999999998249969999489991899999999970566788199806489999999999
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~~~~ilv~~P~R~lA~qia~~ 216 (1387)
+++.+.+.+.+.++..|.+.|++.+.. +..+++++++||||||||+++++++++... .+++++|++|+|+||.|++++
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~-i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~ 87 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEK-VFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYES 87 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHH-HTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHH
T ss_conf 599999999868998899999999999-838996899868961799999999999998-689599993709999999999
Q ss_pred HHHHHCCCCCCCCEEEECCCCCC---CCCCCCEEEECHHHHHHHHHCCC-CCCCEEEEEECCCCCCCCCHH---HHHHHH
Q ss_conf 99983388888507972388865---66998199989067899762388-778502999817320332201---799999
Q 000621 217 VREESRGCYEDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTD---LLLALV 289 (1387)
Q Consensus 217 v~~~~~~~~~~~~v~~~~~~~~~---~~~~~~Iiv~Tpg~Ll~~l~~~~-~l~~l~~IVIDEaHeR~~~~d---~l~~~l 289 (1387)
+.... . .+..++...+.... ....++|+|+|||+|.+.+..++ .+.++++||+||||+ ..+.+ .+..++
T Consensus 88 ~~~~~-~--~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~-l~~~~r~~~~~~ll 163 (702)
T 2p6r_A 88 FKKWE-K--IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL-LDSEKRGATLEILV 163 (702)
T ss_dssp HTTTT-T--TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG-GGCTTTHHHHHHHH
T ss_pred HHHHH-H--CCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEE-CCCCCCCCHHHHHH
T ss_conf 99777-0--49889998388776643526999999898999999975755776259898850255-47877652799999
Q ss_pred HHHHHCCCCCCEEEECCCCC-HHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCCHH---HHHHHHHHHHHHHHCC
Q ss_conf 99973155763896245679-8999987304984545053110379971488778742000---0788999999855016
Q 000621 290 KDLLCRRFDLRLVIMSATAD-AHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGTSAVAS---YVSDVVRMVGEVHTTE 365 (1387)
Q Consensus 290 k~l~~~~~~~kiIllSAT~~-~~~l~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~~~ 365 (1387)
..+...+++.|+|+||||++ .+.+++|+. ++.+...++..|+...+............. ........+.+.. .
T Consensus 164 ~~l~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 240 (702)
T 2p6r_A 164 TKMRRMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--A 240 (702)
T ss_dssp HHHHHHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--H
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHH--H
T ss_conf 999843867659997887689999999848-9723688877664688861782310576301444546999999999--6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHCCC------------------------------CCCEEECCCCCCHHHHHHHHCCC-C
Q ss_conf 8981999938888999999981399------------------------------99268305999986566663039-9
Q 000621 366 KEGTILAFLTSKMEVEWACEKFDAP------------------------------SAVALPFHGQLSFDEQFCVFKSY-P 414 (1387)
Q Consensus 366 ~~g~iLVF~~s~~~ie~l~~~L~~~------------------------------~~~v~~lhs~l~~~er~~v~~~f-~ 414 (1387)
+++++||||+++++++.++..|... +..+.++||+|++++|..+++.| +
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 69978998388789999999999998764695889999986245532199999984692886699999999999999987
Q ss_pred CCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC---CCEEEEEECCCC
Q ss_conf 96399993411101777799009996389864333689884211010258843999860119999---985999424100
Q 000621 415 GRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKSD 491 (1387)
Q Consensus 415 g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~---~G~c~~L~t~~~ 491 (1387)
|.++|||||+++++|||+|++++||+. ...|| +. ..|.|.++|.||+|||||.| +|.||+++++.+
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCCEEEEECCHHHCCCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 998499978388665788733999847----62307---87----77589999999843327999998736999955731
Q ss_pred CCCC---CCCCCCCHHCCCHHH------HHHHHHHCCC-CC---CCCC---CCC----CCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 0259---999982013056589------9999998299-88---7776---545----9880999999999998808641
Q 000621 492 FETR---PLNQEPEIHRVHLGI------AVLRILALGI-RD---VQGF---DFI----DAPSAKAIEMAIRNLVQLGAIK 551 (1387)
Q Consensus 492 ~~~~---~~~~~pEi~r~~L~~------~~L~l~~lgi-~~---~~~f---~~l----~~P~~~~i~~al~~L~~lgai~ 551 (1387)
+..+ .-...||+.+++|.. .++...+.|. .+ +..| .|+ ++|+.+.+..+++.|..+|+|+
T Consensus 390 ~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~ 469 (702)
T 2p6r_A 390 REIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVV 469 (702)
T ss_dssp HHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 89999999608998846516860558999999997177888999999998506777501789999999999999885942
Q ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH--CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-CCC-
Q ss_conf 5588335698899966038872557989997520--452799999677217787554468952666999866310-389-
Q 000621 552 LNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR--RLGREGLVLAAVMANASSIFCRVGSDDEKIKADCLKVQF-CHR- 627 (1387)
Q Consensus 552 ~~~~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~--~c~~~~l~iaA~l~~~~~~f~~~~~~~~~~~~~~~~~~f-~~~- 627 (1387)
.+ +.+.+|++|+.|+.+|++|..+++++.+... .|..+++.|+|+.+..++++.+.+..+-.+........+ ..+
T Consensus 470 ~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~~~~~~ 548 (702)
T 2p6r_A 470 EA-AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPS 548 (702)
T ss_dssp ES-SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCC
T ss_pred EC-CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 89-90664869999999857898999999974304687899999953774444577787659999999865466667863
Q ss_pred -CC-------CHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -99-------689999999997108932101226521687888999999899999999
Q 000621 628 -NG-------DLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCL 677 (1387)
Q Consensus 628 -~g-------D~ltll~vy~~~~~~~~~~~~~wC~~n~Ls~~~l~~~~~~~~QL~~~L 677 (1387)
.. .++-..-+.+.|.+ .......|..+.+...-++.+.+....|...+
T Consensus 549 ~~~~~~~~~~~~~k~~~lL~~~~~--~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 549 DFSVEYDWFLSEVKTALCLKDWIE--EKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604 (702)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 000012345666999999999982--79868899885776775999999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=460.48 Aligned_cols=526 Identities=15% Similarity=0.084 Sum_probs=364.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf 53223677500002999999997015999099999999998249969999489991899999999970566788199806
Q 000621 125 RFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQ 204 (1387)
Q Consensus 125 ~f~~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~~~~ilv~~ 204 (1387)
+|++++ +++.+.+.+.+.++..|.+.|++++..++..+++++++||||||||+++++++++.....+++++|++
T Consensus 2 ~f~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELR------VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp BGGGCC------SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CHHHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 576549------99899999987799889999999999985579948998699637999999999999986799899985
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC---CCCCCCCCEEEECHHHHHHHHHCCC-CCCCEEEEEECCCCCCCC
Q ss_conf 489999999999999833888885079723888---6566998199989067899762388-778502999817320332
Q 000621 205 PRKIAAISLAQRVREESRGCYEDDSVICYPSFS---SAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSL 280 (1387)
Q Consensus 205 P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~---~~~~~~~~Iiv~Tpg~Ll~~l~~~~-~l~~l~~IVIDEaHeR~~ 280 (1387)
|+|+||.|++++++.+.. . +..++...+.. ......++|+|+|||+|.+.+..+. .+.++++||+|||| +..
T Consensus 76 P~raLa~q~~~~~~~l~~-~--g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H-~l~ 151 (720)
T 2zj8_A 76 PLKALAEEKFQEFQDWEK-I--GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH-LIG 151 (720)
T ss_dssp SSGGGHHHHHHHTGGGGG-G--TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG-GGG
T ss_pred CCHHHHHHHHHHHHHHHH-C--CCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCC-CCC
T ss_conf 969999999999998873-5--977999638977641214799999988899999997571466527989998985-567
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEECCCC-CHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 2017999999997315576389624567-989999873049845450531103799714887787-42000078899999
Q 000621 281 NTDLLLALVKDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCGISHVVGRNFPVDVRYVPCATAGT-SAVASYVSDVVRMV 358 (1387)
Q Consensus 281 ~~d~l~~~lk~l~~~~~~~kiIllSAT~-~~~~l~~~f~~~~v~~i~gr~~pv~~~~~~~~~~~~-~~~~~~~~~~~~~i 358 (1387)
+.+....+...+...+.+.|+|+||||+ +.+.+++|+. .+.+....+..|+...+........ .............+
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELV 230 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHH
T ss_conf 876447999999986407769997588689999999829-8603789888763688975781311653200016999999
Q ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHCCC---------------------------------CCCEEECCCCCCHHH
Q ss_conf 98550168981999938888999999981399---------------------------------992683059999865
Q 000621 359 GEVHTTEKEGTILAFLTSKMEVEWACEKFDAP---------------------------------SAVALPFHGQLSFDE 405 (1387)
Q Consensus 359 ~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~---------------------------------~~~v~~lhs~l~~~e 405 (1387)
.+.+ .+++++||||+++++++.++..|... ...+.++||+|++++
T Consensus 231 ~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 308 (720)
T 2zj8_A 231 YDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDE 308 (720)
T ss_dssp HHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred HHHH--HCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHH
T ss_conf 9998--67998899965879999999999999987459066899999999875166508899998519463248999999
Q ss_pred HHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC---CC
Q ss_conf 66663039-996399993411101777799009996389864333689884211010258843999860119999---98
Q 000621 406 QFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PG 481 (1387)
Q Consensus 406 r~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~---~G 481 (1387)
|..+++.| +|.++|||||+++++|||+|++++||+.. ..|| ..| ..|.|.++|.||+|||||.| +|
T Consensus 309 R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 309 RVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp HHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CCC-----CCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999779975999881866628888528998487----2406-888-----7608999999987544899888876
Q ss_pred EEEEEECCCCCC----CCCCCCCCCHHCC-----CHHHHHHHHHHCCCC----CCCCC---CCC------CCCCHHHHHH
Q ss_conf 599942410002----5999998201305-----658999999982998----87776---545------9880999999
Q 000621 482 RCYRLYSKSDFE----TRPLNQEPEIHRV-----HLGIAVLRILALGIR----DVQGF---DFI------DAPSAKAIEM 539 (1387)
Q Consensus 482 ~c~~L~t~~~~~----~~~~~~~pEi~r~-----~L~~~~L~l~~lgi~----~~~~f---~~l------~~P~~~~i~~ 539 (1387)
.||.+++..+.. .+.....+++... .|...++...+.|.. ++..| .|+ +++..+.+..
T Consensus 379 ~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 458 (720)
T 2zj8_A 379 EGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRN 458 (720)
T ss_dssp EEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHH
T ss_conf 69999667109999999961899871765686043999999999717788999999999827687743645789999999
Q ss_pred HHHHHHHCCCEE-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 999998808641-5588335698899966038872557989997520----45279999967721778755446895266
Q 000621 540 AIRNLVQLGAIK-LNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRR----RLGREGLVLAAVMANASSIFCRVGSDDEK 614 (1387)
Q Consensus 540 al~~L~~lgai~-~~~~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~----~c~~~~l~iaA~l~~~~~~f~~~~~~~~~ 614 (1387)
+++.|...|+|+ .+++.+.+|++|+.|+.+|++|..+++++.++.. .|..+++.|+|+.+..+++|.+++ +..
T Consensus 459 ~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~--e~~ 536 (720)
T 2zj8_A 459 ILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKR--EFE 536 (720)
T ss_dssp HHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHH--HHH
T ss_pred HHHHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHH--HHH
T ss_conf 999999887935778982755769999999738999999999998764258988899997505853212663777--899
Q ss_pred HHHHHH-H--------HHHCCCCC--------CHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 699986-6--------31038999--------689999999997108932101226521687888999999899999999
Q 000621 615 IKADCL-K--------VQFCHRNG--------DLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCL 677 (1387)
Q Consensus 615 ~~~~~~-~--------~~f~~~~g--------D~ltll~vy~~~~~~~~~~~~~wC~~n~Ls~~~l~~~~~~~~QL~~~L 677 (1387)
.-.+.. + ..+..... .++-..-+.+.|.+ .......+..+.+...-++.+.+....|...+
T Consensus 537 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~--~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~ 614 (720)
T 2zj8_A 537 RLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWIN--EVPEGEIVEKYSVEPGDIYRIVETAEWLVYSL 614 (720)
T ss_dssp HHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998563201236553344420135567777999999999981--79878888883887676999999999999999
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=386.22 Aligned_cols=250 Identities=28% Similarity=0.491 Sum_probs=218.7
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 8777654-598809999999999988086415588335698899966038872557989997520452799999677217
Q 000621 522 DVQGFDF-IDAPSAKAIEMAIRNLVQLGAIKLNNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGREGLVLAAVMAN 600 (1387)
Q Consensus 522 ~~~~f~~-l~~P~~~~i~~al~~L~~lgai~~~~~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~~c~~~~l~iaA~l~~ 600 (1387)
.+..|++ +|||+.+++..|++.|..+||||.++ .||++|+.|+.+|+||++||||+.+..++|++++++|||+|+
T Consensus 4 ~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g---~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls- 79 (270)
T 3i4u_A 4 RGPEFELGTRGSPMETLITAMEQLYTLGALDDEG---LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLS- 79 (270)
T ss_dssp ----------CCHHHHHHHHHHHHHHHTSBCTTS---CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHT-
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC-
T ss_conf 4102666899949999999999999868947999---826899999718998799999998212388999999999977-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78755446895266699986631038999689999999997108932101226521687888999999899999999986
Q 000621 601 ASSIFCRVGSDDEKIKADCLKVQFCHRNGDLFTLLSVYREWDSLPREERNKWCWENSVNAKSLRRCQDTIKELETCLEKE 680 (1387)
Q Consensus 601 ~~~~f~~~~~~~~~~~~~~~~~~f~~~~gD~ltll~vy~~~~~~~~~~~~~wC~~n~Ls~~~l~~~~~~~~QL~~~L~~e 680 (1387)
.+++|.++ .+++++++.+|.+|.++.|||+|++|+|++|.+ +...++||++||||+++|+++.+++.||..++. .
T Consensus 80 ~~~~f~~p--~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~--~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~-~ 154 (270)
T 3i4u_A 80 VQNVFYRP--KDKQALADQKKAKFHQTEGDHLTLLAVYNSWKN--NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMD-R 154 (270)
T ss_dssp SSCCBCCC--GGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHH--TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHH-H
T ss_pred CCCCCCCC--CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-H
T ss_conf 98634597--236999999998735888769999999999997--375366898844899999999999999999898-7
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 33225764458999994016999999999410011323077877718942596199899994323599998999998511
Q 000621 681 LAIIIPSYWLWNPHKYTEYDKWLKEIILSALAENVAMFSGYDQLGYEVAMTGQHVQLHPSCSLLIFGQKPTWVVFGELLS 760 (1387)
Q Consensus 681 l~~~~~~~~~~~~~~~~~~~~~i~~~l~agf~~nvA~~~~~~~~gy~~~~~~~~v~IHPSS~L~~~~~~p~~vvy~elv~ 760 (1387)
.++...+ ...+...|+++||+|||+|||+++.. . +|.++.+++.|+|||||+| ++..|+||||+|++.
T Consensus 155 ~~~~~~s--------~~~~~~~i~~~L~aG~~~nvA~~~~~-~-~Y~~~~~~~~v~iHPsS~L--~~~~p~wvvy~Elv~ 222 (270)
T 3i4u_A 155 HKLDVVS--------CGKSTVRVQKAICSGFFRNAAKKDPQ-E-GYRTLIDQQVVYIHPSSAL--FNRQPEWVVYHELVL 222 (270)
T ss_dssp TTCCCCC--------CTTCTHHHHHHHHHHHGGGEEEECSS-S-SEEETTTCCEEEECTTSTT--TTSCCSEEEEEEEEE
T ss_pred CCCCCCC--------CCCHHHHHHHHHHHHHHHHHHEECCC-C-CEEECCCCCEEEECCHHHH--CCCCCCEEEEEEHHH
T ss_conf 3998677--------72168999999999848878223788-8-6687158977998850453--089998799985564
Q ss_pred CCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 322122111221954372117998202441010
Q 000621 761 VNNQYLVCVTAFDFDSLSTLCPSPLFDVSMMER 793 (1387)
Q Consensus 761 tsk~yl~~vt~I~~~wL~~~~~~~~~~~s~~~~ 793 (1387)
|++.|||+||+|+|+||.+++| ++|..+..+.
T Consensus 223 Tsk~y~r~vt~I~p~wL~~~ap-~~~~~~~~~~ 254 (270)
T 3i4u_A 223 TTKEYMREVTTIDPRWLVEFAP-AFFKVLEVDL 254 (270)
T ss_dssp SSSEEEEEEEECCHHHHHHHCT-TTEECC----
T ss_pred HHHHHHHHCCCCCHHHHHHHHH-HHHCCCCCCC
T ss_conf 1476877400168999999848-8734002466
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=379.01 Aligned_cols=446 Identities=16% Similarity=0.154 Sum_probs=299.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC----------CCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 1599909999999999824996999948999189999999997056----------678819980648999999999999
Q 000621 149 EDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI----------AAEQSIVCTQPRKIAAISLAQRVR 218 (1387)
Q Consensus 149 ~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~----------~~~~~ilv~~P~R~lA~qia~~v~ 218 (1387)
++..+.++|.+.++.++.++++++++||||||||+.+...++.... ..+.++++++|+|+||.|+.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 89999999999999997589939999688146999999999999986234344445799889998997999999999999
Q ss_pred HHHCCCCCCCCEEEECCCCC---CCCCCCCEEEECHHHHHHHHHCCC---CCCCEEEEEECCCCC----CCCCHHHHHHH
Q ss_conf 98338888850797238886---566998199989067899762388---778502999817320----33220179999
Q 000621 219 EESRGCYEDDSVICYPSFSS---AQHFDSKVIYMTDHCLLQHFMNDR---DLSRISCIIVDEAHE----RSLNTDLLLAL 288 (1387)
Q Consensus 219 ~~~~~~~~~~~v~~~~~~~~---~~~~~~~Iiv~Tpg~Ll~~l~~~~---~l~~l~~IVIDEaHe----R~~~~d~l~~~ 288 (1387)
+.+... +..|+...+... .....++|+|+|||++-..+.+.. .++++++|||||+|. |+...+..+..
T Consensus 156 ~~~~~~--gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~r 233 (1724)
T 4f92_B 156 KRLATY--GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 233 (1724)
T ss_dssp HHHTTT--TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHH
T ss_pred HHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHH
T ss_conf 777547--988999979988871435899999988799999975885304454758899955544299567999999999
Q ss_pred -HHHHHHCCCCCCEEEECCCC-CHHHHHHHHCCCC---EEEEECCCCEE--EEEEECCCCCCCCCCHHHHHHHHHHHH-H
Q ss_conf -99997315576389624567-9899998730498---45450531103--799714887787420000788999999-8
Q 000621 289 -VKDLLCRRFDLRLVIMSATA-DAHQLSKYFYDCG---ISHVVGRNFPV--DVRYVPCATAGTSAVASYVSDVVRMVG-E 360 (1387)
Q Consensus 289 -lk~l~~~~~~~kiIllSAT~-~~~~l~~~f~~~~---v~~i~gr~~pv--~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 360 (1387)
++......+++|+|+||||+ |.+.+++|+...+ ...+.....|+ +.++..... ..... ........+. .
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 310 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE--KKAIK-RFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECC--CCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCC--CCHHH-HHHHHHHHHHHH
T ss_conf 999997379998099995456999999998678888886997999766731799965687--54145-667788999999
Q ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHCC-------------------------------------CCCCEEECCCCCCH
Q ss_conf 55016898199993888899999998139-------------------------------------99926830599998
Q 000621 361 VHTTEKEGTILAFLTSKMEVEWACEKFDA-------------------------------------PSAVALPFHGQLSF 403 (1387)
Q Consensus 361 i~~~~~~g~iLVF~~s~~~ie~l~~~L~~-------------------------------------~~~~v~~lhs~l~~ 403 (1387)
+......+++||||+++++|+.++..|.+ ....++.+||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCH
T ss_conf 99975699689987888999999999999876455212213333057888776640244488999864577887599999
Q ss_pred HHHHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC---
Q ss_conf 6566663039-996399993411101777799009996389864333689884211010258843999860119999---
Q 000621 404 DEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE--- 479 (1387)
Q Consensus 404 ~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~--- 479 (1387)
++|..+++.| +|..+|||||+++++|||+|++++||.. ...|||..|. ..|+|..+|.||+|||||.|
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~ 462 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDT 462 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCS
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCEEEEEC----CEEECCCCCC----CCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 999999999877997499984266713888870699828----8770476787----56389999987640126888887
Q ss_pred CCEEEEEECCCCCCC---CCCCCCC-C-HHCCCHHHHHHHHHHCC-CCCC----------------------CCC-----
Q ss_conf 985999424100025---9999982-0-13056589999999829-9887----------------------776-----
Q 000621 480 PGRCYRLYSKSDFET---RPLNQEP-E-IHRVHLGIAVLRILALG-IRDV----------------------QGF----- 526 (1387)
Q Consensus 480 ~G~c~~L~t~~~~~~---~~~~~~p-E-i~r~~L~~~~L~l~~lg-i~~~----------------------~~f----- 526 (1387)
.|.++.+.+.++... +...+.| | -+...+.+.++....+| +.+. ..+
T Consensus 463 ~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~ 542 (1724)
T 4f92_B 463 KGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDL 542 (1724)
T ss_dssp CEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCC
T ss_conf 64799983502599999997499851020331078899999987024789999999964378877532746543671001
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHCCCEEC--CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHCC
Q ss_conf ---54598809999999999988086415--5883356988999660388725579899975204527-99999677217
Q 000621 527 ---DFIDAPSAKAIEMAIRNLVQLGAIKL--NNGVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLGR-EGLVLAAVMAN 600 (1387)
Q Consensus 527 ---~~l~~P~~~~i~~al~~L~~lgai~~--~~~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~~c~~-~~l~iaA~l~~ 600 (1387)
+.++....+.+..++..|...|+|.. .++.+.+|++|+.|+++++++...+.+.......+.+ +.+.+.|....
T Consensus 543 ~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~e 622 (1724)
T 4f92_B 543 KGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 622 (1724)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHH
T ss_conf 23637899999999999999988799014067786434448799998368999999998635888999999999757752
Q ss_pred CCCCCCC
Q ss_conf 7875544
Q 000621 601 ASSIFCR 607 (1387)
Q Consensus 601 ~~~~f~~ 607 (1387)
...+.++
T Consensus 623 f~~i~~R 629 (1724)
T 4f92_B 623 FKNITVR 629 (1724)
T ss_dssp GTTCCCC
T ss_pred HCCCCCC
T ss_conf 1667707
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=376.46 Aligned_cols=468 Identities=13% Similarity=0.080 Sum_probs=315.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEEECCH
Q ss_conf 2367750000299999999701599909999999999824996999948999189999999997056-678819980648
Q 000621 128 DCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI-AAEQSIVCTQPR 206 (1387)
Q Consensus 128 ~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~-~~~~~ilv~~P~ 206 (1387)
++...+.+.+....+++++..++..+.++|.+++...+.++++++++||||||||+++..+++.... ..++++++++|+
T Consensus 902 dl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~ 981 (1724)
T 4f92_B 902 DLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPM 981 (1724)
T ss_dssp CCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 58878855446888999997267899979999999996689968999379887469999999999985899879998682
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC---CCCCCCEEEECHHHHHHHHHCC---CCCCCEEEEEECCCCCCCC
Q ss_conf 999999999999983388888507972388865---6699819998906789976238---8778502999817320332
Q 000621 207 KIAAISLAQRVREESRGCYEDDSVICYPSFSSA---QHFDSKVIYMTDHCLLQHFMND---RDLSRISCIIVDEAHERSL 280 (1387)
Q Consensus 207 R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~~~---~~~~~~Iiv~Tpg~Ll~~l~~~---~~l~~l~~IVIDEaHeR~~ 280 (1387)
|+||.|.+..+.+.++.. .+..++...+.... ...+++|+|+|||++...+.+. ..++++++||+||+| +..
T Consensus 982 raLa~q~~~~~~~~f~~~-~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H-~l~ 1059 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDR-LNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH-LIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTT-SCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG-GGG
T ss_pred HHHHHHHHHHHHHHHCHH-CCCEEEEEECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHH-HCC
T ss_conf 999999999999984422-097899997997812111589999998879999998384446413523189701011-047
Q ss_pred CH-----HHHHHHHHHHH-HCCCCCCEEEECCCC-CHHHHHHHHCCC--CEEEEEC--CCCEEEEEEECCCCCCCCCCHH
Q ss_conf 20-----17999999997-315576389624567-989999873049--8454505--3110379971488778742000
Q 000621 281 NT-----DLLLALVKDLL-CRRFDLRLVIMSATA-DAHQLSKYFYDC--GISHVVG--RNFPVDVRYVPCATAGTSAVAS 349 (1387)
Q Consensus 281 ~~-----d~l~~~lk~l~-~~~~~~kiIllSAT~-~~~~l~~~f~~~--~v~~i~g--r~~pv~~~~~~~~~~~~~~~~~ 349 (1387)
+. +..+..++.+. ...+++|+|+||||+ |++.+++|++.. .+..+.. |..|.+.+....... .....
T Consensus 1060 d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~--~~~~~ 1137 (1724)
T 4f92_B 1060 GENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS--HTQTR 1137 (1724)
T ss_dssp STTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCC--SHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCC--CCHHH
T ss_conf 8787639999999999986368886399992888999999998679987758948888888708999803677--71666
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCC----------------------------------CCCCEE
Q ss_conf 0788999999855016898199993888899999998139----------------------------------999268
Q 000621 350 YVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDA----------------------------------PSAVAL 395 (1387)
Q Consensus 350 ~~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~----------------------------------~~~~v~ 395 (1387)
...........+....+.+++||||+++..|+.++..|.. ....+.
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred HHHHCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCEE
T ss_conf 65320149999998537997215578889999999999988762643022201339999999864142889998747889
Q ss_pred ECCCCCCHHHHHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCC
Q ss_conf 305999986566663039-9963999934111017777990099963898643336898842110102588439998601
Q 000621 396 PFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGR 474 (1387)
Q Consensus 396 ~lhs~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GR 474 (1387)
.+||+|++.+|..+++.| +|.++|||||+++++|||+|++.+||... .+||.... ...|.|..+|.||+||
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTT
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECC----CCCCCCCC----CCCCCCHHHHHHHHCC
T ss_conf 977999999999999999779984999886997578988618999567----11367555----6677999999976151
Q ss_pred CCCCC---CCEEEEEECCCCCC---CCCCCCCC--CHHCCCHHHHHHHHHHCCC-CCCC---------------------
Q ss_conf 19999---98599942410002---59999982--0130565899999998299-8877---------------------
Q 000621 475 AGRTE---PGRCYRLYSKSDFE---TRPLNQEP--EIHRVHLGIAVLRILALGI-RDVQ--------------------- 524 (1387)
Q Consensus 475 AGR~~---~G~c~~L~t~~~~~---~~~~~~~p--Ei~r~~L~~~~L~l~~lgi-~~~~--------------------- 524 (1387)
|||.| .|.|+.++...+.. .+...+.| .-+...+...++...+.|. .+..
T Consensus 1290 AGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~ 1369 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNY 1369 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGG
T ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 35788788628999965457789999737997035454411178999999854348899999999730799987307320
Q ss_pred -CC-----CCCCCCCHHHHHHHHHHHHHCCCEECCC-CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCH-HHHHHHHH
Q ss_conf -76-----5459880999999999998808641558-8335698899966038872557989997520452-79999967
Q 000621 525 -GF-----DFIDAPSAKAIEMAIRNLVQLGAIKLNN-GVFELTEEGKFLVKLGIEPRLGKLILSCFRRRLG-REGLVLAA 596 (1387)
Q Consensus 525 -~f-----~~l~~P~~~~i~~al~~L~~lgai~~~~-~~~~lT~lG~~~a~lpl~p~~~k~ll~~~~~~c~-~~~l~iaA 596 (1387)
.+ ..++....+.+..+++.|.+.|+|..++ +.+.+|++|+.++.++++|..++++..+....+. ...+.+.+
T Consensus 1370 y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~ 1449 (1724)
T 4f92_B 1370 YNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS 1449 (1724)
T ss_dssp TTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 25665335567899999999999999988899986998786668999999977899999999985443698888998840
Q ss_pred HHCCCCCCCCC
Q ss_conf 72177875544
Q 000621 597 VMANASSIFCR 607 (1387)
Q Consensus 597 ~l~~~~~~f~~ 607 (1387)
....-.++..+
T Consensus 1450 ~a~ef~~i~~R 1460 (1724)
T 4f92_B 1450 NAAEYENIPIR 1460 (1724)
T ss_dssp TSGGGTTCCCC
T ss_pred CCCCCCCCCCC
T ss_conf 78454566436
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=367.96 Aligned_cols=334 Identities=19% Similarity=0.147 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 02999999997015999099999999998249969999489991899999999970566788199806489999999999
Q 000621 137 IQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGIAAEQSIVCTQPRKIAAISLAQR 216 (1387)
Q Consensus 137 l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~~~~~~ilv~~P~R~lA~qia~~ 216 (1387)
+.+.+...+.......|.+.|+++|..+. .++.++++||||||||+++..+++... ..++++++++|+|+||.|++++
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHH
T ss_conf 77335477898479999999999999997-699889988999971999999999997-5597499990849999999999
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCC-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9998338888850797238886566998199989067899762388-778502999817320332201799999999731
Q 000621 217 VREESRGCYEDDSVICYPSFSSAQHFDSKVIYMTDHCLLQHFMNDR-DLSRISCIIVDEAHERSLNTDLLLALVKDLLCR 295 (1387)
Q Consensus 217 v~~~~~~~~~~~~v~~~~~~~~~~~~~~~Iiv~Tpg~Ll~~l~~~~-~l~~l~~IVIDEaHeR~~~~d~l~~~lk~l~~~ 295 (1387)
+.+.++ .+++..+ +.....+++|+|+|||+|.+++..+. .+.++++||||||| ++.+.++...+...+...
T Consensus 247 l~~~~~------~VglltG-d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 247 LLAEFG------DVGLMTG-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HHHHTS------SEEEECS-SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHS
T ss_pred HHHHHC------CCCEEEC-CCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCHHHHHHHHHHHC
T ss_conf 999828------9218967-65268999989967699999997475432237899870021-202300689999999864
Q ss_pred CCCCCEEEECCCC-CHHHHHHHHCC-----CCEEEEECCCCEEEEEEECCCCCCCCCCH---------HH----------
Q ss_conf 5576389624567-98999987304-----98454505311037997148877874200---------00----------
Q 000621 296 RFDLRLVIMSATA-DAHQLSKYFYD-----CGISHVVGRNFPVDVRYVPCATAGTSAVA---------SY---------- 350 (1387)
Q Consensus 296 ~~~~kiIllSAT~-~~~~l~~~f~~-----~~v~~i~gr~~pv~~~~~~~~~~~~~~~~---------~~---------- 350 (1387)
++++++++||||+ +...++.|+.. +.++....+..|+..++.+.......... .+
T Consensus 319 ~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~ 398 (1108)
T 3l9o_A 319 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 398 (1108)
T ss_dssp CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 77764999728889879999999851589827983478755406898624776425641442201156689999998754
Q ss_pred --------------------------HHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCC-----------
Q ss_conf --------------------------7889999998550168981999938888999999981399992-----------
Q 000621 351 --------------------------VSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAV----------- 393 (1387)
Q Consensus 351 --------------------------~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~~~~----------- 393 (1387)
....+..+...+.....+++||||+++.+|+.++..|...++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 399 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 11332112343322223445554432056899999999962899889995848789999999986469977789999999
Q ss_pred ----------------------------EEECCCCCCHHHHHHHHCCC-CCCEEEEEECCHHHCCCCCCCCEEEEECCCC
Q ss_conf ----------------------------68305999986566663039-9963999934111017777990099963898
Q 000621 394 ----------------------------ALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNVAETSLTIPGVKFVIDSGMV 444 (1387)
Q Consensus 394 ----------------------------v~~lhs~l~~~er~~v~~~f-~g~~kVLVaT~iae~GIdIp~V~~VId~g~~ 444 (1387)
+..+||+|++.+|..+++.| +|.++|||||+++++|||+|++++||+++.+
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~ 558 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 558 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCCC
T ss_conf 99887504644330056887877651575652589989999999999867998499987277657787874599965766
Q ss_pred CCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC---CCEEEEEECCC
Q ss_conf 64333689884211010258843999860119999---98599942410
Q 000621 445 KESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE---PGRCYRLYSKS 490 (1387)
Q Consensus 445 k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~---~G~c~~L~t~~ 490 (1387)
|++. ...|+|.++|+||+|||||.| .|.||.+++..
T Consensus 559 ----~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 559 ----WDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ----ESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred ----CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC
T ss_conf ----6864------45638999999763634778999855999995588
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=362.76 Aligned_cols=335 Identities=17% Similarity=0.228 Sum_probs=256.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC--
Q ss_conf 466745555322367750000299999999701599909999999999824996999948999189999999997056--
Q 000621 117 YDANVDVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYGEQILVLIGETGCGKSTQLVQFLADSGI-- 194 (1387)
Q Consensus 117 ~~~~~~~~~f~~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~~~vviI~a~TGSGKT~~i~~~ll~~~~-- 194 (1387)
.+.+.++.+|++++ +++.+++.+.+.++..|++.|+++++.++.++++++ +|+||||||+++..+++....
T Consensus 49 ~~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~-~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 49 SDVPQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMA-CAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SSCCCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEE-ECCTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEE-ECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99897768852369------999999999976999999899999999966998899-87899982399999999999844
Q ss_pred -----CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC------CCCCCCCEEEECHHHHHHHHHCCC-
Q ss_conf -----67881998064899999999999998338888850797238886------566998199989067899762388-
Q 000621 195 -----AAEQSIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS------AQHFDSKVIYMTDHCLLQHFMNDR- 262 (1387)
Q Consensus 195 -----~~~~~ilv~~P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~~------~~~~~~~Iiv~Tpg~Ll~~l~~~~- 262 (1387)
..+.++++++|+|+||.|+++.+.+....... .++...+... ....+++|+|+|||+|++.+....
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~--~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL--KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSC--CCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCC--EEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCC
T ss_conf 5321358964899934899999999999997334786--79999788887899998506998999874899999972885
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH--CCCCCCEEEECCCCCHH--HHHHHHCCCCEEEEECC----CCEEEE
Q ss_conf 77850299981732033220179999999973--15576389624567989--99987304984545053----110379
Q 000621 263 DLSRISCIIVDEAHERSLNTDLLLALVKDLLC--RRFDLRLVIMSATADAH--QLSKYFYDCGISHVVGR----NFPVDV 334 (1387)
Q Consensus 263 ~l~~l~~IVIDEaHeR~~~~d~l~~~lk~l~~--~~~~~kiIllSAT~~~~--~l~~~f~~~~v~~i~gr----~~pv~~ 334 (1387)
.+.+++++|+|||| ++++.+|...+.+.+.. .+++.|+++||||++.. .+...+...+.....+. ...+..
T Consensus 200 ~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 200 TFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp CCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEE
T ss_pred CCCCCCEEEECCHH-HHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCE
T ss_conf 63327768875176-66306719999999972578988569999556898999999986469889995356666665336
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCC-
Q ss_conf 9714887787420000788999999855016898199993888899999998139999268305999986566663039-
Q 000621 335 RYVPCATAGTSAVASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY- 413 (1387)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~~~~v~~lhs~l~~~er~~v~~~f- 413 (1387)
.+..... ......+..+..... +++||||+++.+++.++..|...++.+..+||++++.+|..+++.|
T Consensus 279 ~~~~~~~----------~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~ 347 (434)
T 2db3_A 279 TIYEVNK----------YAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK 347 (434)
T ss_dssp EEEECCG----------GGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECC----------HHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 9999371----------777999999998579-98799994718999999999867998799849999999999999998
Q ss_pred CCCEEEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC-CCEEEEEECCC
Q ss_conf 996399993411101777799009996389864333689884211010258843999860119999-98599942410
Q 000621 414 PGRRKVIFATNVAETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKS 490 (1387)
Q Consensus 414 ~g~~kVLVaT~iae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~-~G~c~~L~t~~ 490 (1387)
+|+.+|||||+++++|+|+|+|++||++++|. |..+|+||+|||||.| .|.|+.+++++
T Consensus 348 ~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~------------------~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 348 NGSMKVLIATSVASRGLDIKNIKHVINYDMPS------------------KIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp TSSCSEEEECGGGTSSCCCTTCCEEEESSCCS------------------SHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred CCCCCEEEECHHHHCCCCCCCCCEEEEECCCC------------------CHHHHHHHHCCCCCCCCCCEEEEEEECC
T ss_conf 59993999820645778832489899978999------------------9889999816065589987799998064
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=362.53 Aligned_cols=341 Identities=14% Similarity=0.193 Sum_probs=259.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHHHCCCCC--CC
Q ss_conf 5555322367750000299999999701599909999999999824-99699994899918999999999705667--88
Q 000621 122 DVFRFEDCQRFDWSRIQAFIVRECKRLEDGLPIYMYRQDILRRIYG-EQILVLIGETGCGKSTQLVQFLADSGIAA--EQ 198 (1387)
Q Consensus 122 ~~~~f~~l~~~~~~~l~~~ll~~l~~~~~~lP~~~q~~~I~~~l~~-~~vviI~a~TGSGKT~~i~~~ll~~~~~~--~~ 198 (1387)
+..+|++++ +++.+++.+.++++..|++.|+.+++.++.+ +++++++||||||||+++..+++...... ..
T Consensus 90 ~~~~f~~~~------l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~ 163 (479)
T 3fmp_B 90 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (479)
T ss_dssp CCCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC
T ss_pred CCCCHHHCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 759977769------99999999997599999989999999997489985899857998351999999999876347887
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC---CCCCCCCEEEECHHHHHHHHHCCC--CCCCEEEEEEC
Q ss_conf 1998064899999999999998338888850797238886---566998199989067899762388--77850299981
Q 000621 199 SIVCTQPRKIAAISLAQRVREESRGCYEDDSVICYPSFSS---AQHFDSKVIYMTDHCLLQHFMNDR--DLSRISCIIVD 273 (1387)
Q Consensus 199 ~ilv~~P~R~lA~qia~~v~~~~~~~~~~~~v~~~~~~~~---~~~~~~~Iiv~Tpg~Ll~~l~~~~--~l~~l~~IVID 273 (1387)
+++|++|+++||.|+++++..+..... ...+++..+... ......+|+|+||++|++++.+.. .+.++++||+|
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYP-ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTST-TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 479993839999999999999972288-7459999688640211147899899786389999972699672339899997
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHCCCCCCEEEECCCCCHHH--HHHHHCCCCE-EEEECCC---CEEEEEEECCCCCCCCC
Q ss_conf 73203322-0179999999973155763896245679899--9987304984-5450531---10379971488778742
Q 000621 274 EAHERSLN-TDLLLALVKDLLCRRFDLRLVIMSATADAHQ--LSKYFYDCGI-SHVVGRN---FPVDVRYVPCATAGTSA 346 (1387)
Q Consensus 274 EaHeR~~~-~d~l~~~lk~l~~~~~~~kiIllSAT~~~~~--l~~~f~~~~v-~~i~gr~---~pv~~~~~~~~~~~~~~ 346 (1387)
||| ++.+ ..+...........+++.++++||||++... +...+...+. +.+.... ..+...+...
T Consensus 243 Eah-~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------- 314 (479)
T 3fmp_B 243 EAD-VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC------- 314 (479)
T ss_dssp CHH-HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred CHH-HHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEE-------
T ss_conf 778-884418967899999963885464999948788799999999769986996266456767766999994-------
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCC-CCCEEEEEECCH
Q ss_conf 0000788999999855016898199993888899999998139999268305999986566663039-996399993411
Q 000621 347 VASYVSDVVRMVGEVHTTEKEGTILAFLTSKMEVEWACEKFDAPSAVALPFHGQLSFDEQFCVFKSY-PGRRKVIFATNV 425 (1387)
Q Consensus 347 ~~~~~~~~~~~i~~i~~~~~~g~iLVF~~s~~~ie~l~~~L~~~~~~v~~lhs~l~~~er~~v~~~f-~g~~kVLVaT~i 425 (1387)
.........+..++.....+++||||+++..++.++..|...+..+..+||+|++.+|..+++.| +|+.+|||||++
T Consensus 315 --~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~ 392 (479)
T 3fmp_B 315 --SSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 392 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf --777889999999985256786699968688999999999758951899608899999999999997699959998442
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCC-CCEEEEEECCCC
Q ss_conf 101777799009996389864333689884211010258843999860119999-985999424100
Q 000621 426 AETSLTIPGVKFVIDSGMVKESYFEPGTGMNVLRVCRVSQSSANQRAGRAGRTE-PGRCYRLYSKSD 491 (1387)
Q Consensus 426 ae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRAGR~~-~G~c~~L~t~~~ 491 (1387)
+++|+|+|+|++||++++|....+ +.|..+|+||+|||||.| .|.|+.+++..+
T Consensus 393 ~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 393 CARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEEECCCCCCCC------------CCCHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 116776223998999669998766------------7789999987243356999843999974730
Done!