Query 000622
Match_columns 1386
No_of_seqs 189 out of 510
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 17:11:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000622.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_394-397//hhsearch_pdb/000622hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fu6_A PC4 and SFRS1-interacti 1.0 1 1 205.9 3.1 104 1-107 1-105 (153)
2 2daq_A WHSC1L1 protein, isofor 1.0 1 1 175.8 6.5 99 18-117 5-108 (110)
3 2l89_A PWWP domain-containing 1.0 1 1 174.4 3.0 96 18-113 2-102 (108)
4 3llr_A DNA (cytosine-5)-methyl 1.0 1 1 173.0 6.7 93 17-110 12-105 (154)
5 3qby_A Hepatoma-derived growth 1.0 1 1 172.9 7.8 84 20-106 4-87 (94)
6 1ri0_A Hepatoma-derived growth 1.0 1 1 172.4 6.6 87 17-106 15-101 (110)
7 1khc_A DNA cytosine-5 methyltr 1.0 1 1 168.0 6.2 93 18-111 8-101 (147)
8 2gfu_A DNA mismatch repair pro 1.0 1 1 165.9 5.5 99 17-115 18-123 (134)
9 1h3z_A Hypothetical 62.8 kDa p 1.0 1 1 162.5 7.5 92 19-110 4-102 (109)
10 3pfs_A Bromodomain and PHD fin 1.0 1 1 145.8 7.8 86 19-104 34-145 (158)
No 1
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=205.91 Aligned_cols=104 Identities=30% Similarity=0.539 Sum_probs=89.2
Q ss_pred CCCCCCCCCHHH-HHHHHHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCC
Q ss_conf 984101330278-9988631898669799980389988971562989878778897599999369976650279753462
Q 000622 1 MAPSRRKGASKA-AAAAAARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFT 79 (1386)
Q Consensus 1 MaP~r~kg~~ka-aAaa~a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~K~~~kkylV~FFGThEyAWVkpkdLkPFs 79 (1386)
|||.|+|.+++. ...+...+.|++||||||||+|||||||+|+++.....+...++|+|+|||+++||||..++|++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~awv~~~~l~~f~ 80 (153)
T 4fu6_A 1 MHHHHHHSSGRENLYFQGMTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 80 (153)
T ss_dssp ------------CTTTTCSGGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCEEEECGGGEEEHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCEEEECHHHCCCHH
T ss_conf 97534466532367776414689999999882799799997971722421589889898896689986875787734757
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 6789766430479807799999999999
Q 000622 80 EEKKQSLLTKRQGRGADFVRAVQEIIDS 107 (1386)
Q Consensus 80 E~kk~sfl~KrkgK~k~FreALeEAee~ 107 (1386)
+++.. |..+ .|.+.|++||+||++.
T Consensus 81 e~~~~-~~k~--~k~k~f~~Av~Eie~~ 105 (153)
T 4fu6_A 81 ENKEK-YGKP--NKRKGFNEGLWEIDNN 105 (153)
T ss_dssp HHHHH-HCSC--CSSTTHHHHHHHHHHC
T ss_pred HHHHH-HHCC--CCHHHHHHHHHHHHHC
T ss_conf 67888-7431--0469999999999977
No 2
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=175.84 Aligned_cols=99 Identities=20% Similarity=0.407 Sum_probs=82.5
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-----CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 318986697999803899889715629898787-----788975999993699766502797534626789766430479
Q 000622 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQG 92 (1386)
Q Consensus 18 a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~-----K~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~Krkg 92 (1386)
..+.|.+||||||||+|||||||+|+++...+. +...+.|+|+|||+++|+||..++|++|.++... |....+.
T Consensus 5 ~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~~-~~~~~~~ 83 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKS-FAEGQTS 83 (110)
T ss_dssp CCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCCS-SSCSSCC
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHCCCCCCCEEEEEECCCCEEEECHHHCCCCCHHHHH-HHHHCCC
T ss_conf 788787998999980798999655389456987776416789838999956898899868987273002477-7662421
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8077999999999999998510134
Q 000622 93 RGADFVRAVQEIIDSYEKLKKQDQV 117 (1386)
Q Consensus 93 K~k~FreALeEAee~~E~lK~QeQ~ 117 (1386)
+.+.|++||+||++.++.++.+.++
T Consensus 84 ~~k~f~~Al~eA~~~~~~~~~~r~~ 108 (110)
T 2daq_A 84 INKTFKKALEEAAKRFQELKASGPS 108 (110)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4399999999999999998753112
No 3
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=174.44 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=79.4
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC---C--CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 318986697999803899889715629898787---7--88975999993699766502797534626789766430479
Q 000622 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY---S--ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQG 92 (1386)
Q Consensus 18 a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~---K--~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~Krkg 92 (1386)
+...|++||||||||+|||||||+|+++...+. + ...+.|+|+|||+++||||.+++|++|+++....|+.++++
T Consensus 2 ~~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~k~ 81 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSEIAKFLGSSKR 81 (108)
T ss_dssp CSCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHHHHHHHHHCSSS
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEECHHHCEECCHHHHHHHHHCCCC
T ss_conf 87756689999997378588866754745384877602689986999987899789986212446788899998760477
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 807799999999999999851
Q 000622 93 RGADFVRAVQEIIDSYEKLKK 113 (1386)
Q Consensus 93 K~k~FreALeEAee~~E~lK~ 113 (1386)
|.+.|++||++|.++..+...
T Consensus 82 k~k~l~~Aye~A~~~~~l~~f 102 (108)
T 2l89_A 82 KSKELIEAYEASKTPPDLKEE 102 (108)
T ss_dssp CCHHHHHHHHHHTCGGGTSSC
T ss_pred CCHHHHHHHHHHCCCCCHHHH
T ss_conf 879999999997058878999
No 4
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=1.00 E-value=1 Score=172.95 Aligned_cols=93 Identities=17% Similarity=0.305 Sum_probs=76.0
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 6318986697999803899889715629898787-788975999993699766502797534626789766430479807
Q 000622 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGA 95 (1386)
Q Consensus 17 ~a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~-K~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~KrkgK~k 95 (1386)
...+.|++||||||||+|||||||+|+++..... +...++|+|+|||+++||||.+++|++|.++++. |...++.|.+
T Consensus 12 ~dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~~e~-f~~~~~~K~~ 90 (154)
T 3llr_A 12 EDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSA-FHQATYNKQP 90 (154)
T ss_dssp CSSCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEGGGHHHH-CCHHHHHHCH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHHH-HHHHHCCCHH
T ss_conf 568988668889996688887997874310102336889979999957997799768987463212899-8565024639
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 799999999999999
Q 000622 96 DFVRAVQEIIDSYEK 110 (1386)
Q Consensus 96 ~FreALeEAee~~E~ 110 (1386)
.|++||+||++.+..
T Consensus 91 ~fr~AV~eAle~a~~ 105 (154)
T 3llr_A 91 MYRKAIYEVLQVASS 105 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 5
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=1.00 E-value=1 Score=172.95 Aligned_cols=84 Identities=32% Similarity=0.581 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89866979998038998897156298987877889759999936997665027975346267897664304798077999
Q 000622 20 RQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGADFVR 99 (1386)
Q Consensus 20 k~FkvGDLVWAKVKGYPwWPArIvdPee~a~K~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~KrkgK~k~Fre 99 (1386)
.+|++||||||||+|||||||+|+++.....+...++|+|+||||++||||..++|++|.+++.. |.. ..|++.|++
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~~-~~k--~~k~k~F~~ 80 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDK-YGK--PNKRKGFNE 80 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHHH-HCS--CCSSTTHHH
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEECHHHEEEHHHHHHH-HCC--CCCHHHHHH
T ss_conf 73766899999557879899798524301546789889999973898336846675677887998-746--746799999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000622 100 AVQEIID 106 (1386)
Q Consensus 100 ALeEAee 106 (1386)
||+||++
T Consensus 81 Al~Eien 87 (94)
T 3qby_A 81 GLWEIQN 87 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999721
No 6
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=172.42 Aligned_cols=87 Identities=34% Similarity=0.635 Sum_probs=74.0
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 63189866979998038998897156298987877889759999936997665027975346267897664304798077
Q 000622 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGAD 96 (1386)
Q Consensus 17 ~a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~K~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~KrkgK~k~ 96 (1386)
.....|++||||||||+|||||||+|+++.....+...+.|+|+||||++||||..++|++|.+++. .|..+ .|++.
T Consensus 15 ~~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~-k~~~~--~K~k~ 91 (110)
T 1ri0_A 15 NRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKE-KFGKP--NKRKG 91 (110)
T ss_dssp CCSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHHHH-HCCCC--CCCHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHH-HHCCC--CCCHH
T ss_conf 5567798899999976897988999832557654789997999992489879987888232156478-87454--26399
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 000622 97 FVRAVQEIID 106 (1386)
Q Consensus 97 FreALeEAee 106 (1386)
|++||+||++
T Consensus 92 f~~Al~Eie~ 101 (110)
T 1ri0_A 92 FSEGLWEIEN 101 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 7
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=1.00 E-value=1 Score=168.05 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=75.0
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCC-CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 3189866979998038998897156298987877-889759999936997665027975346267897664304798077
Q 000622 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYS-ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGAD 96 (1386)
Q Consensus 18 a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~K-~~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~KrkgK~k~ 96 (1386)
....|++||||||||+|||||||+|+++.....+ ...+.|+|+|||+++||||.+++|++|.+++. .|..++..|++.
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~~~e-~f~~~~~~K~~~ 86 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQ-HFNLATFNKLVS 86 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHH-HCCHHHHHHCHH
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEECCCHHHHCCCCCCCEEEEEEECCCCEEEECHHHCCCCHHHHH-HHHHHCCCCHHH
T ss_conf 8866767999998357738899785364011103577881899994699889976898813447899-876403110789
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q 000622 97 FVRAVQEIIDSYEKL 111 (1386)
Q Consensus 97 FreALeEAee~~E~l 111 (1386)
|++||+||++.....
T Consensus 87 f~kAv~eA~e~A~~r 101 (147)
T 1khc_A 87 YRKAMYHTLEKARVR 101 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 8
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=165.85 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=77.7
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC----CCCCCEEEEEEECCC-CEEEECCCCCCCCCHHHHHHHHHH--
Q ss_conf 6318986697999803899889715629898787----788975999993699-766502797534626789766430--
Q 000622 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY----SADWKKVLVFFFGTQ-QIAFCNPADVEAFTEEKKQSLLTK-- 89 (1386)
Q Consensus 17 ~a~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~----K~~~kkylV~FFGTh-EyAWVkpkdLkPFsE~kk~sfl~K-- 89 (1386)
.....|++||||||||+|||||||+|+++..... +...+.|+|+|||++ +||||..++|++|.++....+..+
T Consensus 18 ~~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~~~~k~~~ 97 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGH 97 (134)
T ss_dssp CSSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTSTTTSTTCT
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHCCC
T ss_conf 76777878989999626878778664131010455521478861899989999836887789820075346788763031
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47980779999999999999985101
Q 000622 90 RQGRGADFVRAVQEIIDSYEKLKKQD 115 (1386)
Q Consensus 90 rkgK~k~FreALeEAee~~E~lK~Qe 115 (1386)
.+.+.+.|++||++|.+.++..++++
T Consensus 98 ~~~~~~~~~~Ai~~A~~a~~~~~eeR 123 (134)
T 2gfu_A 98 FYSAKPEILRAMQRADEALNKDKIKR 123 (134)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 00212999999999999862899999
No 9
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=162.46 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=75.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-----CC--CCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 18986697999803899889715629898787-----78--897599999369976650279753462678976643047
Q 000622 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SA--DWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQ 91 (1386)
Q Consensus 19 ~k~FkvGDLVWAKVKGYPwWPArIvdPee~a~-----K~--~~kkylV~FFGThEyAWVkpkdLkPFsE~kk~sfl~Krk 91 (1386)
...|++||||||||+|||||||+|+++..... +. ..+.|+|+|||+++||||..++|++|.++....++.+.+
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~~ 83 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEKPK 83 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCHHHHHHHHHSCS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHEEECCCHHHHHHHHCCC
T ss_conf 65587899999985880889989716077767765037778999799998689998998889924178167788753446
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 9807799999999999999
Q 000622 92 GRGADFVRAVQEIIDSYEK 110 (1386)
Q Consensus 92 gK~k~FreALeEAee~~E~ 110 (1386)
.|++.+.+||++|.+..+.
T Consensus 84 ~k~k~l~~Ay~~A~~~~~~ 102 (109)
T 1h3z_A 84 PKTASLIKAYKMAQSTPDL 102 (109)
T ss_dssp SCCHHHHHHHHHHHHCCSG
T ss_pred CCCHHHHHHHHHHHCCCCH
T ss_conf 3779999999998226987
No 10
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=1.00 E-value=1 Score=145.77 Aligned_cols=86 Identities=27% Similarity=0.375 Sum_probs=62.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCC-------------C------------CCCCCEEEEEEECC-CCEEEECC
Q ss_conf 1898669799980389988971562989878-------------7------------78897599999369-97665027
Q 000622 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWG-------------Y------------SADWKKVLVFFFGT-QQIAFCNP 72 (1386)
Q Consensus 19 ~k~FkvGDLVWAKVKGYPwWPArIvdPee~a-------------~------------K~~~kkylV~FFGT-hEyAWVkp 72 (1386)
...|++||||||||+|||||||+|++|..-. . +...+.|+|+|||+ ++|+||..
T Consensus 34 ~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~~ 113 (158)
T 3pfs_A 34 RGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPR 113 (158)
T ss_dssp CSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEEG
T ss_pred CCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECC
T ss_conf 77788898889864777999878718888664522356536789099985220003567998799997689993686361
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 97534626789766430479807799999999
Q 000622 73 ADVEAFTEEKKQSLLTKRQGRGADFVRAVQEI 104 (1386)
Q Consensus 73 kdLkPFsE~kk~sfl~KrkgK~k~FreALeEA 104 (1386)
++|++|........+.-..+|+..+++|+++|
T Consensus 114 ~~L~Pl~~d~~~D~~kl~e~Kks~~rKAl~~A 145 (158)
T 3pfs_A 114 DKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVA 145 (158)
T ss_dssp GGEEECSSCHHHHHHHHTTTTTSTHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 35734577166524442137878999999999
Done!