BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000624
(1385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 197/387 (50%), Gaps = 17/387 (4%)
Query: 971 NNLKPYHWLKL-TRAMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLXXXXXX 1029
N LK ++W KL ++G++W E D+ D+ +LE FSA D
Sbjct: 15 NALKSFNWSKLPENKLEGTVWTEI---DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 71
Query: 1030 XXXXXXP---------KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSA-LD 1079
K + + +I+ RRA NC I+L+++K+ ++ ++L +D+ L
Sbjct: 72 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 131
Query: 1080 IDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQ 1139
D ++ L+KF P K ++++L+ + + + K ++F E+ ++ + +L+ FK +F
Sbjct: 132 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFA 191
Query: 1140 TQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKL 1199
+V++++ + I S SEEV S LK++++ +L+ GN +N G RG+A GF++ SL K+
Sbjct: 192 ERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKI 250
Query: 1200 TDTRARNNK-MTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGL 1258
DT++ +K +TL+HYL ++ K P +L ++L + + K+ + L +E+ + GL
Sbjct: 251 ADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGL 310
Query: 1259 EKVVQELTASENDGEVSGN-FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317
+ V EL ++ G+ F ++ +F++ A + L + ++FGE+
Sbjct: 311 KAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEE 370
Query: 1318 PARCPFEQVVSTLLNFVKMFVLAHEEN 1344
+ ++ F++ A +EN
Sbjct: 371 AGKIQPDEFFGIFDQFLQAVSEAKQEN 397
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 197/387 (50%), Gaps = 17/387 (4%)
Query: 971 NNLKPYHWLKL-TRAMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLXXXXXX 1029
N LK ++W KL ++G++W E D+ D+ +LE FSA D
Sbjct: 13 NALKSFNWSKLPENKLEGTVWTEI---DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 69
Query: 1030 XXXXXXP---------KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSA-LD 1079
K + + +I+ RRA NC I+L+++K+ ++ ++L +D+ L
Sbjct: 70 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 129
Query: 1080 IDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQ 1139
D ++ L+KF P K ++++L+ + + + K ++F E+ ++ + +L+ FK +F
Sbjct: 130 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFA 189
Query: 1140 TQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKL 1199
+V++++ + I S SEEV S LK++++ +L+ GN +N G RG+A GF++ SL K+
Sbjct: 190 ERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKI 248
Query: 1200 TDTRARNNK-MTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGL 1258
DT++ +K +TL+HYL ++ K P +L ++L + + K+ + L +E+ + GL
Sbjct: 249 ADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGL 308
Query: 1259 EKVVQELTASENDGEVSGN-FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317
+ V EL ++ G+ F ++ +F++ A + L + ++FGE+
Sbjct: 309 KAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEE 368
Query: 1318 PARCPFEQVVSTLLNFVKMFVLAHEEN 1344
+ ++ F++ A +EN
Sbjct: 369 AGKIQPDEFFGIFDQFLQAVSEAKQEN 395
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 173/331 (52%), Gaps = 11/331 (3%)
Query: 1047 RRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDK 1106
+ A N I L ++P ++ +L ++++ L + NLIK P E++++L +
Sbjct: 105 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 164
Query: 1107 GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLK 1166
+L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE+R S
Sbjct: 165 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFS 224
Query: 1167 RIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPEL 1226
+++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ PE+
Sbjct: 225 SLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEV 284
Query: 1227 LGFPKDLVSLEASTKIQLKFLAEEMQAISK---GLEKVVQELTASENDGEVSGNFCKLLK 1283
L FP +L +E ++++ + L + + + K +E+ VQ A+ ++ + F + +
Sbjct: 285 LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD---KFVEKMT 341
Query: 1284 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343
F+ A+ + L +++S++ L YF DP + E+ L NF MF+ A +E
Sbjct: 342 SFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 401
Query: 1344 NCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1374
N + R++ E+ + KL +K + E L
Sbjct: 402 NQK-----RRETEEKMRRAKLAKEKAEKERL 427
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 201/407 (49%), Gaps = 28/407 (6%)
Query: 970 KNNLKPYHWLKLT-RAMQGSLWAEAQKSDEASKAPEFDMSELESLFS--AAAPNSDLXXX 1026
K L ++W L + G++++E D+ + D+ E LF A P DL
Sbjct: 16 KFRLPVFNWTALKPNQINGTVFSEL---DDEKILEDLDLDRFEELFKTKAQGPALDLICS 72
Query: 1027 XXXXXXXXXPKPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNL 1086
K V L+E RA N I L K ++ ++ D L +D V+ L
Sbjct: 73 KNKTAQKAASK---VTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECL 129
Query: 1087 IKFCPTKEEMEVLKNYNGDKG---NLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVS 1143
++F PT+ E+++L+ Y ++ L ++F L KV R+ ++ +F FQ +
Sbjct: 130 MRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQ 189
Query: 1144 DLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTR 1203
L LN I +AS V++S KLK++++ IL+LGN +N + RG+ GF+L SL L DT+
Sbjct: 190 MLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTK 248
Query: 1204 ARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQ 1263
+ + KMTL+H++ + EK PEL F ++L +E + + L+ + +++ + +G+E + +
Sbjct: 249 STDRKMTLLHFIALTVKEKYPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRR 308
Query: 1264 ELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1323
E + +N +L+ FLS EG++ L + +A+ +YFGE P P
Sbjct: 309 ECSIHDNS---------VLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTPP 359
Query: 1324 EQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQ 1370
+ F++ + A +EN E +K ++ V EK Q+ +
Sbjct: 360 SVFFPVFVRFIRSYKEAEQEN------EARKKQEEVMREKQLAQEAK 400
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 172/329 (52%), Gaps = 11/329 (3%)
Query: 1049 ANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGN 1108
A N I L ++P ++ +L ++++ L + NLIK P E++++L + +
Sbjct: 88 AQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDD 147
Query: 1109 LGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRI 1168
L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE+R S +
Sbjct: 148 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 207
Query: 1169 MQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLG 1228
++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ PE+L
Sbjct: 208 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLK 267
Query: 1229 FPKDLVSLEASTKIQLKFLAEEMQAISK---GLEKVVQELTASENDGEVSGNFCKLLKEF 1285
FP +L +E ++++ + L + + + K +E+ VQ A+ ++ + F + + F
Sbjct: 268 FPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD---KFVEKMTSF 324
Query: 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC 1345
+ A+ + L +++S++ L YF DP + E+ L NF MF+ A +EN
Sbjct: 325 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQ 384
Query: 1346 RQLEFERKKAEKAVENEKLKTQKGQSEHL 1374
+ R++ E+ + KL +K + E L
Sbjct: 385 K-----RRETEEKMRRAKLAKEKAEKERL 408
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 173/331 (52%), Gaps = 11/331 (3%)
Query: 1047 RRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDK 1106
+ A N I L ++P ++ +L ++++ L + NLIK P E++++L +
Sbjct: 15 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 74
Query: 1107 GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLK 1166
+L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE+R S
Sbjct: 75 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFS 134
Query: 1167 RIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPEL 1226
+++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L ++ PE+
Sbjct: 135 SLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEV 194
Query: 1227 LGFPKDLVSLEASTKIQLKFLAEEMQAISK---GLEKVVQELTASENDGEVSGNFCKLLK 1283
L FP +L +E ++++ + L + + + K +E+ VQ A+ ++ + F + +
Sbjct: 195 LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD---KFVEKMT 251
Query: 1284 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343
F+ A+ + L +++S++ L YF DP + E+ L NF MF+ A +E
Sbjct: 252 SFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKE 311
Query: 1344 NCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1374
N + R++ E+ + KL +K + E L
Sbjct: 312 NQK-----RRETEEKMRRAKLAKEKAEKERL 337
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 14/183 (7%)
Query: 1089 FCPTKEEMEVLKNYNG------DKGNLGKCEQFFLELMKVPRVES----KLRVFSFKIQF 1138
+ P + E ++N D +L + +Q +L+LM +ES ++R + +
Sbjct: 155 YAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSY 212
Query: 1139 QTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLK 1198
+ + ++L L ++ A ++ S L+ + IL++GN +N + + A GF+L +L +
Sbjct: 213 EREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQR 270
Query: 1199 LTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGL 1258
LT + N MT ++Y+ K++ P F +L + K+ ++ L + + S+ +
Sbjct: 271 LTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSI 330
Query: 1259 EKV 1261
V
Sbjct: 331 VNV 333
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1105 DKGNLGKCEQFFLELMKVPRVES----KLRVFSFKIQFQTQVSDLRTSLNIINSASEEVR 1160
D +L + +Q +L+LM +ES ++R + ++ + ++L L ++ A ++
Sbjct: 154 DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 211
Query: 1161 NSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1220
S L+ + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ K++
Sbjct: 212 ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 269
Query: 1221 EKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKV 1261
P F +L + K+ ++ L + + S+ + V
Sbjct: 270 LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 310
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 1105 DKGNLGKCEQFFLELMKVPRVES----KLRVFSFKIQFQTQVSDLRTSLNIINSASEEVR 1160
D +L + +Q +L+LM +ES ++R + ++ + ++L L ++ A ++
Sbjct: 148 DPNDLQRADQIYLQLM--VNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 205
Query: 1161 NSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLA 1220
S L+ + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ K++
Sbjct: 206 ESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVR 263
Query: 1221 EKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKV 1261
P F +L + K+ ++ L + + S+ + V
Sbjct: 264 LNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNV 304
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 57/282 (20%)
Query: 79 SEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFML 138
++++ V YP P L E + F + WLS +V +HC + G M+
Sbjct: 73 AKFNCRVAQYPFEDHNPPQL--ELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 129
Query: 139 AALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR--RNVGSEWP 196
A L++R +F Q+ LD + R+ + +PSQ RY+ Y S +N ++
Sbjct: 130 CAYLLHRGKFLKAQEALDFYGEVRTRDKKGVT-----IPSQRRYVYYYSYLLKN-HLDYR 183
Query: 197 PLDRALTLDCVILRVIPNFDGEGGCCPIF-------RIYGQD--PLMVADRTPKVLFSTP 247
P+ AL ++ IP F G G C P F +IY + P D+ F P
Sbjct: 184 PV--ALLFHKMMFETIPMFSG-GTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQP 240
Query: 248 KRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQEREEMMFRVMFNTAFIRSN- 306
+ GD+ +E + +++ MF NT FI
Sbjct: 241 ----------------------LPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPE 278
Query: 307 ---------ILMLNRDEIDILWNSK--DLFSKEFRAEVLFSE 337
+L L ++++D K FS F+ ++ F++
Sbjct: 279 EVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTK 320
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 29/219 (13%)
Query: 108 RSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELL 167
R+ +WL +NV ++HC G + ++ A+ I+ ++ + ++Y + P L
Sbjct: 104 RNMYNWLLQNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGL 162
Query: 168 QLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCVILRVIPNFDGE-GGCCPIFR 226
PS RYL Y+ + P + LT+ + + +P F+ + GC P
Sbjct: 163 S--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCD 214
Query: 227 IYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSD 286
+ ++ + +++T + ++ Y+ D ++ I + +QGDVV+ L S
Sbjct: 215 V------LIGETK---IYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVVVSMYHLRST 264
Query: 287 -------QEREEMMFRVMFNTAFI--RSNILMLNRDEID 316
+ +F++ F+T FI + +L + E+D
Sbjct: 265 IGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELD 303
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 30/246 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+ Y + R
Sbjct: 113 FIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE--YFGSRRT 169
Query: 166 LLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGC 221
++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 170 DFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQG------- 221
Query: 222 CPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGD 275
+ R G D M V++R +L + Y D CE+ + + GD
Sbjct: 222 --VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGD 276
Query: 276 VVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRA 331
+ + +S R + F FNT+ + + + L R+EID K ++ F
Sbjct: 277 IKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTV 336
Query: 332 EVLFSE 337
++ FS+
Sbjct: 337 KLTFSD 342
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 140
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 141 YFGSRRTDFEVGDVFQGVFTASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 197
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 198 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 250
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 251 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 307
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 308 YRDNFTVKLTFSDAE 322
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+
Sbjct: 94 TLVDLLKFIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 150
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 151 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 207
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 208 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 260
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 261 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 317
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 318 YRDNFTVKLTFSDAE 332
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 30/246 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +HC + G ++++ L+ +F ++ L+ Y + R
Sbjct: 101 FIDDAKVWMTSDPDHVIAIHC-KAGKGRTGTLVSSWLLEDGKFDTAKEALE--YFGSRRT 157
Query: 166 LLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGC 221
++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 158 DFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQG------- 209
Query: 222 CPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGD 275
+ R G D M V++R +L + Y D CE+ + + GD
Sbjct: 210 --VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGD 264
Query: 276 VVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRA 331
+ + +S R + F FNT+ + + + L R+EID K ++ F
Sbjct: 265 IKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTV 324
Query: 332 EVLFSE 337
++ FS+
Sbjct: 325 KLTFSD 330
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 104/246 (42%), Gaps = 30/246 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+ Y + R
Sbjct: 106 FIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALE--YFGSRRT 162
Query: 166 LLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGC 221
++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 163 DFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQG------- 214
Query: 222 CPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGD 275
+ R G D M V++R +L + Y D CE+ + + GD
Sbjct: 215 --VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGD 269
Query: 276 VVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRA 331
+ + +S R + F FNT+ + + + L R+EID K ++ F
Sbjct: 270 IKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTV 329
Query: 332 EVLFSE 337
++ FS+
Sbjct: 330 KLTFSD 335
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 31/244 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+ + +
Sbjct: 106 FIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALEY-FGSRRTD 163
Query: 166 LLQLMSPLNPLPSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGCCP 223
+ Q + SQ+RY+ Y + +N G + PP+ + L + V + I G G
Sbjct: 164 VFQGVET----ASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQGV-GRGN--- 214
Query: 224 IFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGDVV 277
G D M V++R +L + Y D CE+ + + GD+
Sbjct: 215 -----GSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGDIK 266
Query: 278 LECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRAEV 333
+ +S R + F FNT+ + + + L R+EID K ++ F ++
Sbjct: 267 VRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKL 326
Query: 334 LFSE 337
FS+
Sbjct: 327 TFSD 330
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 37.0 bits (84), Expect = 0.084, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 140
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 141 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 197
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 198 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 250
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 251 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 307
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 308 YRDNFTVKLTFSDAE 322
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 366 VQEIFSNVDWLDPKLDVAVNMLQHFTPSNFIQENLETALNAEKGSIMIESALEKDKEQL 424
V+EI S D++ P LD A ++ +P N+++ LE + A ++ E + D E++
Sbjct: 199 VEEIISRADFVKPSLDDARHLFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEI 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,577,181
Number of Sequences: 62578
Number of extensions: 1117634
Number of successful extensions: 2700
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2671
Number of HSP's gapped (non-prelim): 23
length of query: 1385
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1274
effective length of database: 8,027,179
effective search space: 10226626046
effective search space used: 10226626046
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)