Query 000624
Match_columns 1385
No_of_seqs 630 out of 2324
Neff 6.7
Searched_HMMs 46136
Date Mon Apr 1 21:05:04 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 100.0 6.7E-69 1.4E-73 628.8 44.7 390 958-1352 611-1004(1102)
2 smart00498 FH2 Formin Homology 100.0 2.4E-64 5.3E-69 609.8 41.3 385 966-1358 3-391 (432)
3 PF02181 FH2: Formin Homology 100.0 7.9E-61 1.7E-65 571.2 29.4 366 966-1338 4-370 (370)
4 KOG2283 Clathrin coat dissocia 100.0 3.9E-54 8.5E-59 508.1 27.3 303 4-338 3-317 (434)
5 KOG1923 Rac1 GTPase effector F 100.0 9.5E-50 2.1E-54 473.3 29.5 411 962-1385 360-780 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 3.8E-42 8.1E-47 388.1 31.1 362 968-1348 279-654 (817)
7 KOG1922 Rho GTPase effector BN 100.0 1.2E-40 2.5E-45 435.0 39.5 381 967-1354 390-796 (833)
8 PF10409 PTEN_C2: C2 domain of 99.9 6.6E-26 1.4E-30 232.5 15.6 130 198-337 2-134 (134)
9 PTZ00242 protein tyrosine phos 99.6 1.4E-14 3E-19 153.8 15.6 151 12-191 7-159 (166)
10 KOG1924 RhoA GTPase effector D 99.5 1.3E-11 2.9E-16 148.2 34.0 65 1276-1346 935-1005(1102)
11 PTZ00393 protein tyrosine phos 99.4 4.2E-12 9.1E-17 139.2 13.8 144 16-191 87-230 (241)
12 PHA03247 large tegument protei 99.4 1.1E-08 2.4E-13 136.3 46.0 14 1148-1161 3110-3123(3151)
13 PHA03247 large tegument protei 99.3 1.2E-08 2.6E-13 136.1 44.3 8 45-52 1914-1921(3151)
14 KOG1720 Protein tyrosine phosp 99.2 1.4E-10 2.9E-15 122.9 12.9 156 10-189 47-207 (225)
15 PF05706 CDKN3: Cyclin-depende 99.0 5.2E-10 1.1E-14 116.3 8.0 124 20-155 40-168 (168)
16 smart00195 DSPc Dual specifici 98.9 9E-09 2E-13 106.1 13.6 136 17-188 2-137 (138)
17 COG2453 CDC14 Predicted protei 98.8 1.8E-08 3.8E-13 109.0 10.7 96 81-189 71-166 (180)
18 PF00782 DSPc: Dual specificit 98.8 1.8E-08 3.9E-13 103.1 8.0 122 48-188 11-132 (133)
19 PRK12361 hypothetical protein; 98.7 1.2E-07 2.5E-12 119.8 15.0 142 15-188 94-235 (547)
20 cd00127 DSPc Dual specificity 98.7 1.5E-07 3.3E-12 96.7 12.9 119 16-161 2-121 (139)
21 smart00012 PTPc_DSPc Protein t 98.5 6E-07 1.3E-11 87.2 10.2 88 89-186 9-102 (105)
22 smart00404 PTPc_motif Protein 98.5 6E-07 1.3E-11 87.2 10.2 88 89-186 9-102 (105)
23 KOG1719 Dual specificity phosp 98.4 5.5E-07 1.2E-11 91.3 8.4 97 78-188 71-168 (183)
24 KOG2836 Protein tyrosine phosp 98.4 9.4E-06 2E-10 80.4 14.7 147 10-186 6-152 (173)
25 cd00047 PTPc Protein tyrosine 97.9 3.1E-05 6.8E-10 87.0 9.5 92 85-186 132-228 (231)
26 KOG3671 Actin regulatory prote 97.9 0.00047 1E-08 81.7 17.5 9 135-143 13-21 (569)
27 PRK15375 pathogenicity island 97.8 8.6E-05 1.9E-09 89.5 10.9 96 83-187 423-526 (535)
28 KOG1923 Rac1 GTPase effector F 97.8 0.005 1.1E-07 76.8 25.0 48 1152-1200 553-600 (830)
29 smart00194 PTPc Protein tyrosi 97.6 0.00013 2.8E-09 83.5 8.7 87 89-186 165-255 (258)
30 KOG3671 Actin regulatory prote 97.6 0.0016 3.5E-08 77.3 16.0 6 1042-1047 539-544 (569)
31 KOG0792 Protein tyrosine phosp 97.4 0.00033 7.1E-09 89.6 8.0 90 89-186 1035-1125(1144)
32 PF00102 Y_phosphatase: Protei 97.4 0.00029 6.4E-09 78.7 6.6 87 89-186 142-232 (235)
33 PF03162 Y_phosphatase2: Tyros 97.2 0.00078 1.7E-08 71.9 7.4 122 13-158 4-127 (164)
34 smart00498 FH2 Formin Homology 97.0 0.04 8.8E-07 68.0 21.3 110 1233-1343 315-430 (432)
35 PF14566 PTPlike_phytase: Inos 96.8 0.0011 2.5E-08 69.6 4.2 59 80-143 90-148 (149)
36 KOG2386 mRNA capping enzyme, g 96.7 0.0037 8E-08 74.2 7.5 130 29-167 36-170 (393)
37 PHA02747 protein tyrosine phos 96.6 0.0075 1.6E-07 71.1 9.7 90 84-183 183-288 (312)
38 PLN02727 NAD kinase 96.4 0.0044 9.6E-08 79.7 6.2 80 61-147 284-368 (986)
39 TIGR01244 conserved hypothetic 96.3 0.021 4.5E-07 59.1 9.9 115 15-158 1-121 (135)
40 KOG0790 Protein tyrosine phosp 96.3 0.0043 9.4E-08 72.8 5.0 115 54-186 378-516 (600)
41 PHA02742 protein tyrosine phos 96.3 0.014 3E-07 68.7 9.2 88 89-186 190-291 (303)
42 PHA02746 protein tyrosine phos 96.2 0.0067 1.5E-07 71.9 6.5 88 89-186 209-309 (323)
43 PHA02740 protein tyrosine phos 96.2 0.0084 1.8E-07 70.2 6.9 93 84-186 177-283 (298)
44 PHA02738 hypothetical protein; 96.0 0.01 2.2E-07 70.3 6.3 93 84-186 178-289 (320)
45 KOG1922 Rho GTPase effector BN 96.0 0.93 2E-05 60.9 25.4 119 1244-1366 690-814 (833)
46 KOG0791 Protein tyrosine phosp 96.0 0.017 3.8E-07 67.2 7.7 96 84-187 254-350 (374)
47 KOG0994 Extracellular matrix g 95.9 0.16 3.4E-06 65.9 16.1 21 1164-1184 1469-1489(1758)
48 KOG1716 Dual specificity phosp 95.8 0.1 2.2E-06 60.9 13.2 41 119-161 155-195 (285)
49 KOG1717 Dual specificity phosp 95.7 0.034 7.4E-07 61.8 8.1 93 54-159 195-289 (343)
50 COG5599 PTP2 Protein tyrosine 95.2 0.025 5.3E-07 63.2 5.2 43 103-146 201-244 (302)
51 PF13350 Y_phosphatase3: Tyros 95.0 0.029 6.2E-07 59.9 4.8 37 109-147 115-151 (164)
52 KOG0994 Extracellular matrix g 95.0 5.5 0.00012 52.6 25.0 29 1280-1308 1650-1678(1758)
53 KOG4848 Extracellular matrix-a 94.7 0.45 9.7E-06 50.6 12.3 64 1281-1362 143-212 (225)
54 KOG1572 Predicted protein tyro 93.5 0.53 1.1E-05 52.3 10.6 97 48-148 78-176 (249)
55 PF04273 DUF442: Putative phos 92.4 0.27 5.8E-06 49.1 6.0 92 15-133 1-99 (110)
56 KOG1718 Dual specificity phosp 92.3 1.3 2.8E-05 46.8 10.9 124 6-158 7-131 (198)
57 PF08580 KAR9: Yeast cortical 92.2 3.5 7.5E-05 53.7 17.2 69 1243-1317 200-268 (683)
58 COG2365 Protein tyrosine/serin 92.2 0.27 5.9E-06 56.2 6.6 32 119-151 136-167 (249)
59 KOG1830 Wiskott Aldrich syndro 91.8 2.9 6.4E-05 49.7 14.1 9 1040-1048 489-497 (518)
60 KOG0789 Protein tyrosine phosp 91.7 0.47 1E-05 58.1 8.5 87 89-187 271-363 (415)
61 PF10234 Cluap1: Clusterin-ass 91.2 11 0.00025 43.3 17.9 138 1165-1309 81-229 (267)
62 smart00806 AIP3 Actin interact 90.7 22 0.00049 43.2 20.4 64 1242-1305 250-324 (426)
63 KOG0163 Myosin class VI heavy 90.3 10 0.00023 48.1 17.5 52 1113-1171 807-858 (1259)
64 PF09325 Vps5: Vps5 C terminal 90.0 11 0.00023 42.5 16.8 90 1250-1344 136-226 (236)
65 KOG0979 Structural maintenance 89.1 11 0.00023 49.9 17.0 31 1142-1172 204-234 (1072)
66 PF14671 DSPn: Dual specificit 88.8 0.63 1.4E-05 48.4 5.0 65 92-159 40-108 (141)
67 KOG0976 Rho/Rac1-interacting s 88.7 17 0.00036 46.7 17.6 24 1281-1304 414-437 (1265)
68 KOG0793 Protein tyrosine phosp 88.6 0.35 7.6E-06 60.1 3.5 70 89-161 899-973 (1004)
69 KOG0933 Structural maintenance 88.2 17 0.00037 48.0 17.8 98 1083-1183 525-630 (1174)
70 KOG4228 Protein tyrosine phosp 88.1 0.45 9.9E-06 62.7 4.3 73 60-147 968-1045(1087)
71 KOG1962 B-cell receptor-associ 85.3 16 0.00035 40.7 13.6 69 1112-1181 11-79 (216)
72 cd00179 SynN Syntaxin N-termin 85.1 35 0.00076 35.6 15.9 33 1276-1308 40-72 (151)
73 COG4942 Membrane-bound metallo 84.5 61 0.0013 39.7 19.1 43 1137-1179 84-127 (420)
74 PRK11637 AmiB activator; Provi 84.5 36 0.00078 42.2 18.2 22 1140-1161 96-117 (428)
75 cd07596 BAR_SNX The Bin/Amphip 84.4 69 0.0015 35.2 19.5 62 1279-1344 147-208 (218)
76 PF06160 EzrA: Septation ring 84.2 78 0.0017 40.8 21.4 27 1137-1163 105-131 (560)
77 cd07627 BAR_Vps5p The Bin/Amph 84.1 78 0.0017 35.5 19.3 57 1280-1340 146-202 (216)
78 PLN03188 kinesin-12 family pro 83.8 90 0.0019 43.0 21.7 29 1282-1310 1112-1140(1320)
79 KOG2002 TPR-containing nuclear 83.6 28 0.00061 46.1 16.6 16 1206-1221 713-728 (1018)
80 cd07307 BAR The Bin/Amphiphysi 83.4 49 0.0011 35.1 16.6 56 1286-1345 130-185 (194)
81 KOG2007 Cysteinyl-tRNA synthet 83.3 21 0.00046 44.0 14.5 67 1252-1318 383-454 (586)
82 KOG4302 Microtubule-associated 83.1 7.5 0.00016 49.9 11.3 35 1276-1310 229-263 (660)
83 cd07667 BAR_SNX30 The Bin/Amph 83.1 16 0.00035 41.5 12.8 38 1276-1314 132-169 (240)
84 KOG0971 Microtubule-associated 81.9 88 0.0019 41.3 19.5 32 1055-1086 239-270 (1243)
85 KOG0996 Structural maintenance 81.6 78 0.0017 43.0 19.6 23 1055-1077 261-283 (1293)
86 PF04108 APG17: Autophagy prot 81.4 63 0.0014 40.0 18.3 35 1041-1075 113-147 (412)
87 PF10147 CR6_interact: Growth 81.3 49 0.0011 37.1 15.4 36 1282-1317 137-172 (217)
88 KOG0243 Kinesin-like protein [ 81.0 7.2 0.00016 52.0 10.3 57 1251-1307 406-471 (1041)
89 PF15254 CCDC14: Coiled-coil d 80.6 40 0.00086 43.7 16.0 72 1247-1325 499-570 (861)
90 KOG4460 Nuclear pore complex, 79.6 66 0.0014 40.1 16.7 33 1288-1320 620-652 (741)
91 KOG4228 Protein tyrosine phosp 79.6 1.3 2.9E-05 58.6 3.2 44 89-137 702-747 (1087)
92 PF03999 MAP65_ASE1: Microtubu 79.5 1.8 3.9E-05 56.1 4.4 38 1280-1317 282-319 (619)
93 PF13764 E3_UbLigase_R4: E3 ub 78.9 41 0.0009 44.7 16.2 36 1143-1178 163-204 (802)
94 COG0497 RecN ATPase involved i 78.5 35 0.00076 43.3 14.8 19 1156-1174 214-232 (557)
95 KOG2256 Predicted protein invo 77.4 47 0.001 42.4 15.3 22 1180-1201 479-500 (661)
96 PF09602 PhaP_Bmeg: Polyhydrox 77.4 72 0.0016 34.2 14.4 60 1292-1356 79-138 (165)
97 PRK04863 mukB cell division pr 77.2 40 0.00087 48.0 16.4 52 1124-1175 212-265 (1486)
98 cd07604 BAR_ASAPs The Bin/Amph 76.1 25 0.00054 39.5 11.5 8 1278-1285 42-49 (215)
99 cd08682 C2_Rab11-FIP_classI C2 75.5 19 0.00041 36.4 9.7 84 206-304 5-94 (126)
100 KOG1925 Rac1 GTPase effector F 75.1 84 0.0018 38.6 15.8 35 1188-1222 472-507 (817)
101 TIGR03031 cas_csx12 CRISPR-ass 75.0 8.7 0.00019 47.8 7.9 54 1294-1347 576-640 (802)
102 cd07598 BAR_FAM92 The Bin/Amph 75.0 79 0.0017 35.5 15.0 53 1286-1342 137-189 (211)
103 KOG0976 Rho/Rac1-interacting s 74.7 70 0.0015 41.4 15.5 36 1143-1181 162-197 (1265)
104 cd07623 BAR_SNX1_2 The Bin/Amp 74.1 1.1E+02 0.0025 34.4 16.3 54 1281-1338 153-206 (224)
105 COG5350 Predicted protein tyro 73.9 20 0.00043 37.8 9.0 113 14-147 7-122 (172)
106 PF06008 Laminin_I: Laminin Do 73.9 1.2E+02 0.0027 35.0 16.9 6 1098-1103 32-37 (264)
107 cd07665 BAR_SNX1 The Bin/Amphi 73.5 1.5E+02 0.0032 33.9 16.8 61 1276-1341 159-219 (234)
108 KOG4673 Transcription factor T 73.3 1.1E+02 0.0023 39.3 16.5 52 1292-1345 905-956 (961)
109 PTZ00332 paraflagellar rod pro 73.0 1.4E+02 0.003 37.1 16.9 27 1292-1318 220-246 (589)
110 cd07637 BAR_ACAP3 The Bin/Amph 73.0 78 0.0017 35.2 14.2 23 1244-1266 4-26 (200)
111 KOG2211 Predicted Golgi transp 72.7 1.1E+02 0.0024 39.2 16.6 60 1147-1206 149-208 (797)
112 COG5185 HEC1 Protein involved 72.0 1.9E+02 0.0042 35.6 17.6 18 1278-1295 456-473 (622)
113 PRK04778 septation ring format 71.9 3.1E+02 0.0066 35.6 24.3 28 1137-1164 109-136 (569)
114 KOG0996 Structural maintenance 71.8 1.6E+02 0.0034 40.4 18.3 65 1243-1314 406-470 (1293)
115 PRK10869 recombination and rep 71.5 81 0.0018 40.6 16.0 25 1150-1174 208-232 (553)
116 cd07593 BAR_MUG137_fungi The B 71.5 11 0.00023 42.4 7.2 44 1288-1336 146-189 (215)
117 KOG0163 Myosin class VI heavy 70.8 40 0.00086 43.3 12.2 21 168-188 150-170 (1259)
118 KOG3771 Amphiphysin [Intracell 70.4 99 0.0022 38.2 15.2 49 1289-1337 162-213 (460)
119 PF12325 TMF_TATA_bd: TATA ele 70.4 20 0.00044 36.5 8.2 32 1287-1318 64-95 (120)
120 KOG1029 Endocytic adaptor prot 69.9 1.4E+02 0.003 38.8 16.6 42 1121-1162 438-480 (1118)
121 KOG0250 DNA repair protein RAD 69.6 3.2E+02 0.007 37.4 20.6 10 1049-1058 109-118 (1074)
122 PF12325 TMF_TATA_bd: TATA ele 68.1 93 0.002 31.8 12.3 99 1206-1311 12-116 (120)
123 PRK10132 hypothetical protein; 67.6 30 0.00066 34.6 8.6 74 1243-1318 13-86 (108)
124 KOG0132 RNA polymerase II C-te 67.5 3.7E+02 0.0079 35.4 19.6 15 38-52 38-52 (894)
125 KOG0995 Centromere-associated 67.4 2.9E+02 0.0062 35.2 18.5 58 1244-1306 334-393 (581)
126 KOG0239 Kinesin (KAR3 subfamil 67.3 1.7E+02 0.0038 38.4 17.7 37 1279-1315 236-272 (670)
127 cd07598 BAR_FAM92 The Bin/Amph 67.1 33 0.00072 38.4 9.9 15 1327-1341 89-103 (211)
128 PF04156 IncA: IncA protein; 67.1 1.9E+02 0.0041 31.5 15.8 62 1243-1311 89-150 (191)
129 cd07638 BAR_ACAP2 The Bin/Amph 66.9 71 0.0015 35.5 12.2 23 1243-1265 3-25 (200)
130 PF10168 Nup88: Nuclear pore c 66.6 1E+02 0.0022 40.9 15.6 35 1282-1316 591-625 (717)
131 KOG1029 Endocytic adaptor prot 66.6 4.1E+02 0.0089 34.9 29.4 12 988-999 233-244 (1118)
132 KOG0810 SNARE protein Syntaxin 66.6 2.7E+02 0.0059 32.9 19.3 27 1135-1161 35-61 (297)
133 PF04108 APG17: Autophagy prot 66.5 89 0.0019 38.7 14.4 26 1324-1349 335-360 (412)
134 cd04042 C2A_MCTP_PRT C2 domain 66.4 67 0.0015 32.1 11.3 89 202-304 2-90 (121)
135 KOG0810 SNARE protein Syntaxin 66.3 1.8E+02 0.0038 34.5 15.9 66 1246-1311 44-109 (297)
136 KOG2391 Vacuolar sorting prote 66.2 51 0.0011 38.9 11.2 11 1210-1220 210-220 (365)
137 PF06008 Laminin_I: Laminin Do 66.2 1.3E+02 0.0028 34.8 15.0 46 1284-1330 84-129 (264)
138 cd07620 BAR_SH3BP1 The Bin/Amp 66.0 58 0.0013 37.4 11.4 21 1139-1159 14-34 (257)
139 PF06548 Kinesin-related: Kine 65.9 3.3E+02 0.0072 33.7 20.8 27 1283-1309 343-369 (488)
140 cd00280 TRFH Telomeric Repeat 65.9 2.1E+02 0.0046 31.4 15.1 47 1206-1253 54-101 (200)
141 PF09787 Golgin_A5: Golgin sub 65.6 3.8E+02 0.0082 34.2 20.6 36 1143-1178 197-232 (511)
142 KOG2114 Vacuolar assembly/sort 65.5 88 0.0019 41.2 14.0 17 1043-1059 407-423 (933)
143 PF10475 DUF2450: Protein of u 65.4 82 0.0018 37.0 13.3 23 1108-1130 55-77 (291)
144 cd07594 BAR_Endophilin_B The B 64.6 24 0.00052 40.0 8.2 44 1288-1336 167-210 (229)
145 KOG0995 Centromere-associated 64.4 4E+02 0.0086 34.0 20.4 30 1130-1159 361-390 (581)
146 PF12128 DUF3584: Protein of u 64.3 4.5E+02 0.0097 37.4 22.2 7 1187-1193 582-588 (1201)
147 cd08678 C2_C21orf25-like C2 do 64.1 57 0.0012 32.9 10.3 121 202-338 1-122 (126)
148 COG4192 Signal transduction hi 63.9 3.7E+02 0.008 33.5 21.8 96 1081-1176 95-204 (673)
149 COG4985 ABC-type phosphate tra 63.9 25 0.00053 39.1 7.7 62 1248-1309 185-246 (289)
150 cd07595 BAR_RhoGAP_Rich-like T 63.9 36 0.00079 39.0 9.6 16 1170-1185 64-79 (244)
151 KOG0979 Structural maintenance 63.9 1.4E+02 0.003 40.2 15.5 19 1244-1262 204-222 (1072)
152 cd07649 F-BAR_GAS7 The F-BAR ( 63.6 1.8E+02 0.0039 33.1 15.1 63 1280-1343 157-219 (233)
153 PHA02562 46 endonuclease subun 63.4 1.2E+02 0.0027 38.7 15.5 20 1285-1304 256-275 (562)
154 PF06013 WXG100: Proteins of 1 63.2 1E+02 0.0022 28.1 11.0 61 1244-1305 16-76 (86)
155 KOG0971 Microtubule-associated 63.1 2.8E+02 0.006 37.1 17.5 20 1140-1159 325-344 (1243)
156 smart00503 SynN Syntaxin N-ter 62.9 1.1E+02 0.0024 30.2 12.0 32 1277-1308 43-74 (117)
157 KOG2072 Translation initiation 62.6 2.7E+02 0.0058 36.9 17.3 90 1083-1173 357-458 (988)
158 KOG0933 Structural maintenance 62.5 5.5E+02 0.012 35.0 20.3 23 1245-1267 360-382 (1174)
159 PF05010 TACC: Transforming ac 62.5 1.5E+02 0.0033 33.1 13.8 9 1374-1382 165-173 (207)
160 PHA03246 large tegument protei 62.4 7.9E+02 0.017 36.8 22.9 46 1273-1319 1767-1812(3095)
161 COG5185 HEC1 Protein involved 61.7 2E+02 0.0043 35.5 15.1 11 1210-1220 197-207 (622)
162 COG1340 Uncharacterized archae 61.5 3.3E+02 0.0071 32.1 19.3 20 1139-1158 68-87 (294)
163 KOG2007 Cysteinyl-tRNA synthet 60.7 2.3E+02 0.005 35.5 15.7 19 1298-1316 491-509 (586)
164 cd07592 BAR_Endophilin_A The B 60.6 22 0.00049 40.1 7.1 43 1289-1336 155-197 (223)
165 cd04022 C2A_MCTP_PRT_plant C2 60.2 73 0.0016 32.2 10.2 120 202-336 2-126 (127)
166 PLN02939 transferase, transfer 60.0 3.2E+02 0.0068 37.5 18.2 37 1061-1097 128-169 (977)
167 cd07606 BAR_SFC_plant The Bin/ 60.0 1.9E+02 0.0042 32.2 14.1 11 1335-1345 110-120 (202)
168 PF15003 HAUS2: HAUS augmin-li 59.9 2.2E+02 0.0047 33.1 14.5 61 1243-1303 94-156 (277)
169 PRK00142 putative rhodanese-re 59.9 27 0.00059 41.5 8.0 105 17-146 89-195 (314)
170 cd07639 BAR_ACAP1 The Bin/Amph 59.8 71 0.0015 35.5 10.6 19 1245-1263 5-23 (200)
171 TIGR00606 rad50 rad50. This fa 59.6 7.4E+02 0.016 35.6 23.6 50 1296-1345 359-414 (1311)
172 KOG0999 Microtubule-associated 59.6 4.1E+02 0.0089 33.6 17.4 26 1277-1302 623-648 (772)
173 KOG0978 E3 ubiquitin ligase in 59.4 3.9E+02 0.0086 35.1 18.3 45 1134-1178 84-129 (698)
174 KOG4438 Centromere-associated 59.4 4.2E+02 0.0091 32.6 19.8 21 1061-1081 9-29 (446)
175 PF02181 FH2: Formin Homology 59.4 25 0.00054 42.6 7.9 69 1241-1311 280-350 (370)
176 PRK10869 recombination and rep 59.2 1.6E+02 0.0034 38.0 15.2 8 1097-1104 144-151 (553)
177 COG1579 Zn-ribbon protein, pos 58.8 2.3E+02 0.0049 32.5 14.5 63 1246-1313 63-125 (239)
178 KOG1532 GTPase XAB1, interacts 58.7 85 0.0018 36.4 10.9 34 1322-1355 251-284 (366)
179 PF09763 Sec3_C: Exocyst compl 58.6 5.7E+02 0.012 34.0 22.6 23 1137-1159 27-49 (701)
180 cd04036 C2_cPLA2 C2 domain pre 58.5 85 0.0018 31.2 10.3 92 202-305 2-93 (119)
181 PF09730 BicD: Microtubule-ass 57.9 1.6E+02 0.0035 38.8 14.9 107 1228-1342 377-487 (717)
182 COG4575 ElaB Uncharacterized c 57.9 66 0.0014 31.8 8.6 73 1244-1318 10-83 (104)
183 PF05960 DUF885: Bacterial pro 57.7 42 0.0009 42.9 9.8 41 1276-1316 226-269 (549)
184 cd07603 BAR_ACAPs The Bin/Amph 57.6 41 0.0009 37.3 8.4 119 1241-1361 1-123 (200)
185 PLN03229 acetyl-coenzyme A car 57.4 5.9E+02 0.013 33.7 19.4 16 1165-1180 394-409 (762)
186 PLN03188 kinesin-12 family pro 57.2 5.2E+02 0.011 36.2 19.3 58 1247-1311 1070-1127(1320)
187 PF04849 HAP1_N: HAP1 N-termin 56.8 2.8E+02 0.0061 32.8 15.1 29 1139-1167 96-124 (306)
188 KOG0517 Beta-spectrin [Cytoske 56.7 2.5E+02 0.0054 40.3 16.4 101 1227-1341 977-1077(2473)
189 KOG0612 Rho-associated, coiled 56.1 3.5E+02 0.0076 37.4 17.4 14 1304-1317 699-712 (1317)
190 PLN00047 photosystem II biogen 55.9 1.6E+02 0.0034 34.3 12.6 18 1204-1221 120-137 (283)
191 KOG3745 Exocyst subunit - Sec1 55.7 3.8E+02 0.0082 35.4 17.1 147 1166-1314 176-352 (763)
192 TIGR00606 rad50 rad50. This fa 55.6 6.6E+02 0.014 36.1 21.7 13 121-133 30-42 (1311)
193 cd07639 BAR_ACAP1 The Bin/Amph 55.3 2.8E+02 0.0061 30.9 14.2 43 1242-1287 9-51 (200)
194 KOG1991 Nuclear transport rece 55.0 3.1E+02 0.0068 37.0 16.5 204 1088-1313 356-600 (1010)
195 PF03114 BAR: BAR domain; Int 54.9 3.2E+02 0.0069 29.9 16.3 48 1290-1342 167-215 (229)
196 PF10455 BAR_2: Bin/amphiphysi 54.8 4.2E+02 0.0091 31.3 17.7 41 1276-1316 177-217 (289)
197 smart00721 BAR BAR domain. 54.6 3.5E+02 0.0075 30.2 17.4 50 1286-1339 172-221 (239)
198 KOG4673 Transcription factor T 54.5 3.4E+02 0.0073 35.2 15.9 17 1286-1302 411-427 (961)
199 PRK01415 hypothetical protein; 54.4 41 0.0009 38.6 7.9 103 18-146 91-195 (247)
200 KOG2891 Surface glycoprotein [ 54.3 1.9E+02 0.0041 33.1 12.6 48 1330-1377 379-426 (445)
201 PF09548 Spore_III_AB: Stage I 54.2 2.5E+02 0.0054 30.3 13.5 20 1249-1268 28-47 (170)
202 cd08685 C2_RGS-like C2 domain 54.1 92 0.002 31.4 9.7 95 199-303 11-107 (119)
203 PF05667 DUF812: Protein of un 53.6 6.3E+02 0.014 32.9 22.9 62 1286-1347 449-510 (594)
204 cd08375 C2_Intersectin C2 doma 53.2 94 0.002 32.1 9.8 88 200-301 15-102 (136)
205 cd08384 C2B_Rabphilin_Doc2 C2 53.2 38 0.00083 34.4 6.9 34 197-230 10-43 (133)
206 KOG0243 Kinesin-like protein [ 53.2 7.9E+02 0.017 33.9 20.4 15 363-377 165-179 (1041)
207 PRK13266 Thf1-like protein; Re 53.1 45 0.00097 37.6 7.7 41 1275-1318 141-181 (225)
208 cd01518 RHOD_YceA Member of th 53.0 19 0.00041 34.8 4.4 44 100-146 42-85 (101)
209 cd07641 BAR_ASAP1 The Bin/Amph 52.9 39 0.00086 37.5 7.1 11 1335-1345 111-121 (215)
210 PF00168 C2: C2 domain; Inter 52.8 1.3E+02 0.0027 27.1 9.7 73 202-285 1-74 (85)
211 PF07106 TBPIP: Tat binding pr 52.8 2.8E+02 0.0061 29.7 13.7 85 1243-1347 80-164 (169)
212 KOG0521 Putative GTPase activa 52.7 2.5E+02 0.0054 37.7 15.6 36 1121-1162 15-50 (785)
213 KOG3647 Predicted coiled-coil 52.7 2.1E+02 0.0046 32.8 12.6 34 1231-1264 101-134 (338)
214 COG5104 PRP40 Splicing factor 52.3 5.4E+02 0.012 31.7 20.2 43 1292-1336 416-461 (590)
215 PF08317 Spc7: Spc7 kinetochor 52.1 3.9E+02 0.0085 31.9 16.1 14 1113-1126 57-71 (325)
216 PF08397 IMD: IRSp53/MIM homol 52.1 2.5E+02 0.0055 31.5 13.8 46 1293-1346 60-105 (219)
217 PF04949 Transcrip_act: Transc 52.1 3E+02 0.0066 29.0 12.6 86 1251-1341 61-146 (159)
218 PF07159 DUF1394: Protein of u 52.0 1.1E+02 0.0024 36.1 11.1 35 1088-1125 9-43 (303)
219 KOG0980 Actin-binding protein 51.8 4.5E+02 0.0098 35.2 16.9 41 1135-1175 360-401 (980)
220 cd08390 C2A_Synaptotagmin-15-1 51.8 49 0.0011 33.0 7.3 33 198-230 12-45 (123)
221 PF08429 PLU-1: PLU-1-like pro 51.7 3.2E+02 0.007 32.6 15.4 37 1059-1095 15-52 (335)
222 PF03114 BAR: BAR domain; Int 51.7 3.1E+02 0.0068 29.9 14.5 16 1326-1341 119-134 (229)
223 PF06070 Herpes_UL32: Herpesvi 51.6 2.4E+02 0.0053 37.5 14.7 92 1249-1340 161-279 (839)
224 KOG0388 SNF2 family DNA-depend 51.6 2.2E+02 0.0047 37.1 13.7 28 1324-1351 406-433 (1185)
225 cd07651 F-BAR_PombeCdc15_like 51.5 4.1E+02 0.0089 30.1 15.8 37 1280-1316 153-189 (236)
226 COG4942 Membrane-bound metallo 51.4 5.7E+02 0.012 31.7 17.0 24 1136-1159 62-85 (420)
227 PF07200 Mod_r: Modifier of ru 50.6 1.6E+02 0.0035 30.9 11.2 45 1295-1348 100-144 (150)
228 KOG2856 Adaptor protein PACSIN 50.6 1.7E+02 0.0036 35.1 11.8 60 1271-1335 171-230 (472)
229 TIGR00634 recN DNA repair prot 50.5 4.3E+02 0.0094 34.1 17.3 244 1081-1358 145-390 (563)
230 PF07888 CALCOCO1: Calcium bin 50.5 2.3E+02 0.0049 36.2 13.9 14 1181-1194 98-111 (546)
231 PRK02224 chromosome segregatio 50.3 3E+02 0.0064 37.6 16.6 19 1280-1298 415-433 (880)
232 cd08393 C2A_SLP-1_2 C2 domain 50.1 77 0.0017 32.1 8.5 97 198-304 13-113 (125)
233 PF03249 TSA: Type specific an 50.0 55 0.0012 38.8 7.9 25 1243-1267 266-290 (503)
234 PRK10404 hypothetical protein; 50.0 90 0.0019 30.9 8.4 72 1245-1318 8-80 (101)
235 cd07617 BAR_Endophilin_B2 The 49.9 1.2E+02 0.0027 34.1 10.5 43 1289-1336 159-201 (220)
236 cd07618 BAR_Rich1 The Bin/Amph 49.8 1.4E+02 0.0031 34.2 11.2 36 1169-1204 63-98 (246)
237 cd07601 BAR_APPL The Bin/Amphi 49.7 3.2E+02 0.007 30.8 13.7 120 1244-1378 4-144 (215)
238 KOG4403 Cell surface glycoprot 49.6 2.8E+02 0.006 33.9 13.6 17 1060-1076 64-80 (575)
239 TIGR02132 phaR_Bmeg polyhydrox 49.6 1.1E+02 0.0024 33.1 9.3 52 1239-1293 111-162 (189)
240 PRK10361 DNA recombination pro 49.6 1.7E+02 0.0036 36.8 12.5 61 1287-1347 95-162 (475)
241 PF04420 CHD5: CHD5-like prote 49.5 71 0.0015 34.2 8.4 65 1246-1314 37-103 (161)
242 cd08386 C2A_Synaptotagmin-7 C2 49.3 35 0.00076 34.2 5.8 34 197-230 13-46 (125)
243 cd07635 BAR_GRAF2 The Bin/Amph 49.1 1.3E+02 0.0028 33.7 10.4 132 1241-1380 1-154 (207)
244 KOG0213 Splicing factor 3b, su 48.7 1.3E+02 0.0029 39.0 11.4 49 1281-1332 919-967 (1172)
245 COG3883 Uncharacterized protei 48.3 5E+02 0.011 30.2 17.2 6 1323-1328 129-134 (265)
246 cd08410 C2B_Synaptotagmin-17 C 48.3 89 0.0019 32.1 8.7 100 195-304 9-111 (135)
247 KOG2129 Uncharacterized conser 48.2 3.9E+02 0.0084 32.6 14.4 38 1280-1317 249-287 (552)
248 PF12825 DUF3818: Domain of un 48.2 2.3E+02 0.0051 34.2 13.2 31 1206-1238 91-121 (341)
249 KOG0612 Rho-associated, coiled 47.9 5.2E+02 0.011 35.9 17.0 9 383-391 187-195 (1317)
250 KOG0018 Structural maintenance 47.9 1.1E+02 0.0025 41.2 11.1 70 1243-1315 691-764 (1141)
251 KOG2374 Uncharacterized conser 47.5 4.6E+02 0.0099 32.8 15.1 51 1077-1139 22-72 (661)
252 KOG1853 LIS1-interacting prote 47.3 4.9E+02 0.011 29.8 14.6 25 1241-1265 51-75 (333)
253 PF09787 Golgin_A5: Golgin sub 47.3 2.5E+02 0.0054 35.9 14.1 24 1238-1261 112-135 (511)
254 cd08387 C2A_Synaptotagmin-8 C2 47.2 1E+02 0.0023 30.8 8.9 95 198-304 14-111 (124)
255 KOG2398 Predicted proline-seri 47.1 1.4E+02 0.0031 38.7 11.9 7 1308-1314 75-81 (611)
256 PF05664 DUF810: Protein of un 46.7 5.1E+02 0.011 34.3 16.8 70 1276-1345 455-532 (677)
257 smart00787 Spc7 Spc7 kinetocho 46.6 3.8E+02 0.0082 32.0 14.5 15 1112-1126 51-66 (312)
258 cd08403 C2B_Synaptotagmin-3-5- 46.4 79 0.0017 32.2 8.0 95 197-301 11-108 (134)
259 PF15066 CAGE1: Cancer-associa 46.4 2.8E+02 0.006 34.4 13.1 19 963-981 84-102 (527)
260 PRK11519 tyrosine kinase; Prov 46.0 2.7E+02 0.0059 37.1 14.8 72 1242-1318 267-338 (719)
261 COG3853 TelA Uncharacterized p 45.9 5.4E+02 0.012 31.5 15.5 58 1278-1345 177-236 (386)
262 cd08681 C2_fungal_Inn1p-like C 45.9 90 0.0019 30.9 8.1 87 202-302 3-89 (118)
263 PF04803 Cor1: Cor1/Xlr/Xmr co 45.9 3.7E+02 0.008 28.0 14.7 68 1277-1346 43-110 (130)
264 PRK08307 stage III sporulation 45.8 4.2E+02 0.0091 28.7 13.6 65 1250-1316 30-103 (171)
265 PF09726 Macoilin: Transmembra 45.8 2.9E+02 0.0064 36.6 14.6 21 1287-1307 491-511 (697)
266 KOG2072 Translation initiation 45.8 4.3E+02 0.0094 35.1 15.3 27 1290-1316 728-754 (988)
267 PF13764 E3_UbLigase_R4: E3 ub 45.7 3.1E+02 0.0067 36.9 14.8 39 1189-1227 288-336 (802)
268 PRK09841 cryptic autophosphory 45.6 4.1E+02 0.009 35.5 16.4 71 1243-1318 268-338 (726)
269 cd07674 F-BAR_FCHO1 The F-BAR 45.6 2.4E+02 0.0053 32.6 12.6 61 1282-1343 155-215 (261)
270 smart00787 Spc7 Spc7 kinetocho 45.5 3.3E+02 0.0072 32.5 13.8 13 1149-1161 65-77 (312)
271 cd07588 BAR_Amphiphysin The Bi 45.3 1.4E+02 0.0031 33.5 10.2 21 1324-1344 90-110 (211)
272 KOG1118 Lysophosphatidic acid 45.2 1E+02 0.0022 36.0 9.0 8 1207-1214 105-112 (366)
273 KOG0251 Clathrin assembly prot 45.0 1.2E+02 0.0025 38.4 10.4 39 1276-1314 218-256 (491)
274 PF10805 DUF2730: Protein of u 45.0 1.4E+02 0.003 29.8 9.0 69 1239-1312 32-100 (106)
275 KOG2460 Signal recognition par 45.0 4.9E+02 0.011 32.9 15.1 94 1062-1161 224-322 (593)
276 PF15112 DUF4559: Domain of un 44.8 4.2E+02 0.009 31.4 13.9 49 1129-1177 125-177 (307)
277 cd07648 F-BAR_FCHO The F-BAR ( 44.7 4.3E+02 0.0093 30.4 14.5 18 1327-1344 199-216 (261)
278 cd00276 C2B_Synaptotagmin C2 d 44.7 86 0.0019 31.6 7.9 34 197-230 11-44 (134)
279 cd04030 C2C_KIAA1228 C2 domain 44.7 82 0.0018 31.6 7.7 34 197-230 13-46 (127)
280 KOG4572 Predicted DNA-binding 44.5 9E+02 0.02 32.1 18.3 29 1237-1265 917-945 (1424)
281 PF05600 DUF773: Protein of un 44.3 1.7E+02 0.0037 37.2 11.9 53 1287-1340 141-193 (507)
282 TIGR02833 spore_III_AB stage I 44.3 3.3E+02 0.007 29.5 12.5 19 1250-1268 29-47 (170)
283 KOG1265 Phospholipase C [Lipid 44.2 5.2E+02 0.011 34.7 15.7 23 1125-1147 938-960 (1189)
284 PF12128 DUF3584: Protein of u 44.2 1.2E+03 0.025 33.3 23.0 25 1243-1267 314-338 (1201)
285 cd04037 C2E_Ferlin C2 domain f 44.1 90 0.002 31.5 7.9 30 202-231 2-31 (124)
286 PF08385 DHC_N1: Dynein heavy 44.0 2.5E+02 0.0053 36.1 13.7 18 1321-1338 326-343 (579)
287 PLN03229 acetyl-coenzyme A car 44.0 7.6E+02 0.017 32.8 17.3 61 1253-1314 670-735 (762)
288 PF06160 EzrA: Septation ring 43.9 6.5E+02 0.014 32.6 17.2 32 1286-1317 131-162 (560)
289 PRK05320 rhodanese superfamily 43.8 46 0.00099 38.5 6.3 107 19-146 90-199 (257)
290 KOG4715 SWI/SNF-related matrix 43.8 2.2E+02 0.0048 33.3 11.2 36 1229-1266 210-245 (410)
291 PF12252 SidE: Dot/Icm substra 43.7 6E+02 0.013 34.8 16.2 15 361-375 604-618 (1439)
292 cd08400 C2_Ras_p21A1 C2 domain 43.6 3.5E+02 0.0075 27.3 12.1 121 200-337 4-124 (126)
293 PF08336 P4Ha_N: Prolyl 4-Hydr 43.5 1.9E+02 0.0041 29.9 10.2 66 1276-1347 14-83 (134)
294 PF05278 PEARLI-4: Arabidopsis 43.5 44 0.00096 38.5 5.9 14 1208-1221 124-137 (269)
295 KOG1840 Kinesin light chain [C 43.3 8.2E+02 0.018 31.3 19.4 56 1134-1191 101-156 (508)
296 cd04050 C2B_Synaptotagmin-like 43.1 1.6E+02 0.0034 28.7 9.1 85 202-303 2-86 (105)
297 PF11264 ThylakoidFormat: Thyl 43.1 1E+02 0.0023 34.6 8.6 18 1204-1221 64-81 (216)
298 COG4477 EzrA Negative regulato 43.0 1.7E+02 0.0038 36.8 11.0 22 1242-1263 375-396 (570)
299 cd07638 BAR_ACAP2 The Bin/Amph 42.7 5.2E+02 0.011 28.8 18.0 26 1136-1161 5-30 (200)
300 KOG2085 Serine/threonine prote 42.3 2.7E+02 0.0059 34.1 12.2 62 1161-1222 229-292 (457)
301 PF11887 DUF3407: Protein of u 42.3 2.2E+02 0.0049 33.1 11.6 55 1284-1340 105-159 (267)
302 KOG3080 Nucleolar protein-like 42.3 1.3E+02 0.0029 34.9 9.3 40 1276-1316 135-174 (328)
303 cd08402 C2B_Synaptotagmin-1 C2 42.2 84 0.0018 32.1 7.4 96 195-300 10-108 (136)
304 TIGR01010 BexC_CtrB_KpsE polys 42.1 4.8E+02 0.01 31.5 15.0 71 1242-1317 170-240 (362)
305 PF10354 DUF2431: Domain of un 42.0 62 0.0013 34.9 6.5 102 20-128 21-128 (166)
306 KOG4674 Uncharacterized conser 42.0 1.4E+03 0.031 33.6 23.8 39 1124-1162 1247-1286(1822)
307 PF03915 AIP3: Actin interacti 41.8 5.7E+02 0.012 31.9 15.4 32 1283-1314 291-322 (424)
308 PF03915 AIP3: Actin interacti 41.8 1.2E+02 0.0027 37.5 9.7 65 1243-1307 247-322 (424)
309 PF08514 STAG: STAG domain ; 41.7 2E+02 0.0044 29.2 9.8 26 1276-1302 16-41 (118)
310 cd08385 C2A_Synaptotagmin-1-5- 41.7 1.5E+02 0.0032 29.7 9.0 94 198-303 14-110 (124)
311 KOG0132 RNA polymerase II C-te 41.7 9.9E+02 0.021 31.8 18.1 11 105-115 42-52 (894)
312 PF03904 DUF334: Domain of unk 41.6 2.4E+02 0.0053 31.8 10.9 13 1329-1341 182-194 (230)
313 KOG0977 Nuclear envelope prote 41.5 1.2E+02 0.0027 38.4 9.8 144 1215-1358 86-234 (546)
314 KOG3951 Uncharacterized conser 41.4 3.3E+02 0.0072 31.1 11.9 197 1088-1334 24-227 (321)
315 COG3352 FlaC Putative archaeal 41.2 1.6E+02 0.0034 31.2 8.8 68 1243-1310 73-141 (157)
316 KOG0161 Myosin class II heavy 41.2 9.8E+02 0.021 35.5 19.3 22 102-123 150-171 (1930)
317 KOG0217 Mismatch repair ATPase 41.0 5.5E+02 0.012 35.1 15.6 266 1043-1316 539-850 (1125)
318 KOG4302 Microtubule-associated 41.0 9.8E+02 0.021 31.5 22.9 24 1323-1346 224-247 (660)
319 cd04040 C2D_Tricalbin-like C2 40.9 1.5E+02 0.0033 29.0 8.9 28 204-231 3-30 (115)
320 COG1196 Smc Chromosome segrega 40.9 1.3E+03 0.027 32.8 20.7 13 1079-1091 142-154 (1163)
321 PF13166 AAA_13: AAA domain 40.7 4.4E+02 0.0095 34.9 15.6 206 1073-1315 261-472 (712)
322 KOG2150 CCR4-NOT transcription 40.7 2.7E+02 0.006 35.4 12.4 132 1211-1344 6-141 (575)
323 cd04041 C2A_fungal C2 domain f 40.7 1.2E+02 0.0026 29.9 8.0 29 202-230 3-32 (111)
324 PF04740 LXG: LXG domain of WX 40.6 4.7E+02 0.01 28.7 13.5 7 1210-1216 61-67 (204)
325 KOG3771 Amphiphysin [Intracell 40.6 47 0.001 40.8 5.9 13 1326-1338 110-122 (460)
326 TIGR00996 Mtu_fam_mce virulenc 40.5 1.6E+02 0.0034 34.4 10.3 27 1149-1175 132-158 (291)
327 PF04179 Init_tRNA_PT: Initiat 40.5 36 0.00078 42.4 5.0 44 101-144 358-401 (451)
328 PHA03378 EBNA-3B; Provisional 40.4 3E+02 0.0065 35.5 12.5 12 99-110 107-118 (991)
329 cd04019 C2C_MCTP_PRT_plant C2 40.2 3.5E+02 0.0075 28.5 11.8 119 202-337 2-133 (150)
330 cd07617 BAR_Endophilin_B2 The 40.2 6E+02 0.013 28.8 15.9 25 1137-1161 14-38 (220)
331 PF06013 WXG100: Proteins of 1 40.1 2.8E+02 0.0062 25.0 11.2 57 1281-1341 8-64 (86)
332 PF06992 Phage_lambda_P: Repli 40.1 2.7E+02 0.0058 31.7 11.2 96 1210-1316 38-139 (233)
333 cd08692 C2B_Tac2-N C2 domain s 40.1 1.1E+02 0.0024 31.9 7.7 101 191-303 5-110 (135)
334 cd08376 C2B_MCTP_PRT C2 domain 40.1 2.1E+02 0.0045 28.1 9.7 88 202-304 2-90 (116)
335 PHA02562 46 endonuclease subun 40.0 9.1E+02 0.02 30.8 21.0 20 1282-1301 304-323 (562)
336 PF05701 WEMBL: Weak chloropla 39.9 9.2E+02 0.02 30.9 19.1 19 1323-1341 367-385 (522)
337 PF09802 Sec66: Preprotein tra 39.9 5.2E+02 0.011 28.6 13.1 53 1294-1354 121-175 (190)
338 PHA00728 hypothetical protein 39.8 1E+02 0.0022 31.0 6.8 85 1243-1338 6-103 (151)
339 cd08388 C2A_Synaptotagmin-4-11 39.8 69 0.0015 32.6 6.3 34 197-230 13-47 (128)
340 cd07664 BAR_SNX2 The Bin/Amphi 39.7 6.3E+02 0.014 28.9 19.0 53 1281-1337 163-215 (234)
341 PF09726 Macoilin: Transmembra 39.7 2.7E+02 0.0059 36.9 13.0 31 1235-1265 453-483 (697)
342 cd07643 I-BAR_IMD_MIM Inverse 39.7 6.2E+02 0.013 28.8 15.3 23 1210-1232 8-30 (231)
343 cd08401 C2A_RasA2_RasA3 C2 dom 39.4 1.8E+02 0.0039 29.2 9.2 89 202-304 2-91 (121)
344 PF10669 Phage_Gp23: Protein g 39.4 71 0.0015 30.8 5.5 24 1343-1366 50-73 (121)
345 COG4372 Uncharacterized protei 39.2 5.9E+02 0.013 30.9 14.0 15 1291-1305 151-165 (499)
346 PRK00409 recombination and DNA 39.2 7E+02 0.015 33.7 17.0 7 975-981 8-14 (782)
347 PF15605 Toxin_52: Putative to 39.2 1.3E+02 0.0029 29.6 7.4 53 1248-1300 49-101 (103)
348 cd08404 C2B_Synaptotagmin-4 C2 39.1 1.1E+02 0.0025 31.2 7.8 33 198-230 13-45 (136)
349 PRK14155 heat shock protein Gr 38.8 4E+02 0.0087 29.9 12.3 19 1246-1264 24-42 (208)
350 PF07217 Het-C: Heterokaryon i 38.7 5.7E+02 0.012 32.9 14.6 45 1130-1174 195-243 (606)
351 PF14678 FANCI_S4: FANCI solen 38.6 79 0.0017 36.5 7.1 67 1271-1345 114-184 (256)
352 cd04048 C2A_Copine C2 domain f 38.4 1.4E+02 0.003 29.8 8.1 92 206-304 6-101 (120)
353 PF07083 DUF1351: Protein of u 38.3 6.2E+02 0.014 28.4 14.7 49 1246-1296 46-94 (215)
354 PF04156 IncA: IncA protein; 38.3 5.5E+02 0.012 27.9 13.5 18 1248-1265 80-97 (191)
355 PF03999 MAP65_ASE1: Microtubu 38.1 64 0.0014 42.1 7.0 20 1163-1182 228-247 (619)
356 cd07628 BAR_Atg24p The Bin/Amp 38.1 5.7E+02 0.012 28.0 14.3 61 1244-1314 63-123 (185)
357 PF13949 ALIX_LYPXL_bnd: ALIX 38.0 7E+02 0.015 29.0 16.3 12 1330-1341 274-285 (296)
358 PHA03246 large tegument protei 38.0 1.8E+03 0.038 33.6 22.4 16 269-284 219-234 (3095)
359 PF15086 UPF0542: Uncharacteri 38.0 2.5E+02 0.0054 26.1 8.4 13 1306-1318 7-19 (74)
360 PRK06568 F0F1 ATP synthase sub 38.0 3.8E+02 0.0082 28.7 11.4 30 1281-1310 53-82 (154)
361 KOG1937 Uncharacterized conser 37.9 8.9E+02 0.019 30.1 16.6 78 1289-1366 350-428 (521)
362 PF10146 zf-C4H2: Zinc finger- 37.8 2.8E+02 0.0061 31.6 11.1 23 1282-1304 30-52 (230)
363 KOG0980 Actin-binding protein 37.7 5.6E+02 0.012 34.4 14.7 28 1289-1316 422-449 (980)
364 KOG1920 IkappaB kinase complex 37.7 7.7E+02 0.017 34.4 16.3 22 1278-1299 1018-1039(1265)
365 PF08317 Spc7: Spc7 kinetochor 37.6 5.6E+02 0.012 30.6 14.4 31 1280-1310 212-242 (325)
366 cd07652 F-BAR_Rgd1 The F-BAR ( 37.5 3.7E+02 0.0079 30.6 12.2 19 1289-1307 123-141 (234)
367 KOG4368 Predicted RNA binding 37.4 1E+03 0.022 30.6 16.6 19 1329-1347 258-276 (757)
368 KOG2398 Predicted proline-seri 37.3 3.6E+02 0.0079 35.1 13.3 36 1226-1265 134-169 (611)
369 PRK04654 sec-independent trans 37.3 2E+02 0.0043 32.2 9.3 43 1276-1318 57-99 (214)
370 COG3352 FlaC Putative archaeal 37.1 2.5E+02 0.0055 29.7 9.5 29 1284-1312 72-100 (157)
371 KOG3091 Nuclear pore complex, 37.0 8.3E+02 0.018 30.8 15.4 239 1037-1312 242-497 (508)
372 TIGR03185 DNA_S_dndD DNA sulfu 36.9 5.4E+02 0.012 33.9 15.3 25 1244-1268 393-417 (650)
373 PF14523 Syntaxin_2: Syntaxin- 36.7 4E+02 0.0086 25.7 12.5 43 1255-1301 12-54 (102)
374 PF10168 Nup88: Nuclear pore c 36.7 9.4E+02 0.02 32.2 17.2 72 1228-1303 636-711 (717)
375 PF09403 FadA: Adhesion protei 36.6 5E+02 0.011 26.8 13.0 58 1246-1313 24-81 (126)
376 cd08408 C2B_Synaptotagmin-14_1 36.5 1.2E+02 0.0025 31.5 7.4 97 194-301 9-110 (138)
377 cd08373 C2A_Ferlin C2 domain f 36.4 3.8E+02 0.0082 26.9 11.1 115 208-342 4-122 (127)
378 TIGR01069 mutS2 MutS2 family p 36.4 6.6E+02 0.014 33.9 16.0 26 1284-1309 536-561 (771)
379 TIGR02865 spore_II_E stage II 36.3 7.3E+02 0.016 33.5 16.4 31 1169-1199 223-254 (764)
380 KOG3083 Prohibitin [Posttransl 36.3 1.3E+02 0.0028 33.7 7.8 66 1303-1373 150-220 (271)
381 PTZ00399 cysteinyl-tRNA-synthe 36.2 3.9E+02 0.0084 35.2 13.6 16 1301-1316 448-463 (651)
382 cd07606 BAR_SFC_plant The Bin/ 36.2 6.6E+02 0.014 28.1 19.9 27 1136-1162 4-30 (202)
383 PF15397 DUF4618: Domain of un 36.2 7.5E+02 0.016 28.7 14.1 40 1276-1315 73-112 (258)
384 PF05055 DUF677: Protein of un 36.0 8.4E+02 0.018 29.5 15.3 35 1125-1159 72-106 (336)
385 cd07602 BAR_RhoGAP_OPHN1-like 36.0 6.7E+02 0.014 28.2 13.5 21 1244-1264 4-24 (207)
386 PRK04863 mukB cell division pr 35.7 3.3E+02 0.0071 39.4 13.6 46 1133-1178 887-932 (1486)
387 cd08620 PI-PLCXDc_like_1 Catal 35.7 28 0.0006 40.7 2.9 28 101-128 77-104 (281)
388 KOG4722 Zn-finger protein [Gen 35.6 9E+02 0.02 29.5 20.8 27 1293-1319 347-374 (672)
389 cd04020 C2B_SLP_1-2-3-4 C2 dom 35.5 2.3E+02 0.005 30.2 9.6 96 199-304 26-125 (162)
390 PF14643 DUF4455: Domain of un 35.4 7.2E+02 0.016 31.4 15.5 26 1281-1306 408-433 (473)
391 PF04740 LXG: LXG domain of WX 35.4 6.3E+02 0.014 27.7 13.8 17 1250-1266 18-34 (204)
392 PF07393 Sec10: Exocyst comple 35.4 3.1E+02 0.0068 36.5 12.9 24 1293-1316 254-277 (710)
393 cd04025 C2B_RasA1_RasA4 C2 dom 35.2 2.6E+02 0.0057 27.8 9.6 30 202-231 2-31 (123)
394 cd08382 C2_Smurf-like C2 domai 35.2 2E+02 0.0043 28.9 8.7 29 202-230 2-30 (123)
395 KOG0018 Structural maintenance 35.1 1.4E+03 0.03 31.6 20.9 63 1246-1310 778-840 (1141)
396 cd08405 C2B_Synaptotagmin-7 C2 34.9 1.3E+02 0.0029 30.7 7.5 33 197-229 12-44 (136)
397 cd07614 BAR_Endophilin_A2 The 34.9 92 0.002 35.2 6.7 171 1136-1316 10-211 (223)
398 KOG0804 Cytoplasmic Zn-finger 34.9 2.3E+02 0.0049 35.0 10.1 67 1248-1314 381-451 (493)
399 PF12252 SidE: Dot/Icm substra 34.8 1.4E+03 0.031 31.6 17.9 23 1357-1379 1401-1423(1439)
400 PF08397 IMD: IRSp53/MIM homol 34.8 7E+02 0.015 28.0 17.1 11 1149-1159 19-29 (219)
401 PF09805 Nop25: Nucleolar prot 34.7 55 0.0012 34.1 4.6 22 1329-1350 19-40 (137)
402 KOG3565 Cdc42-interacting prot 34.5 1.2E+03 0.026 30.7 17.4 37 1308-1344 200-239 (640)
403 cd08677 C2A_Synaptotagmin-13 C 34.5 1.8E+02 0.0039 29.6 8.1 92 197-301 11-104 (118)
404 cd01531 Acr2p Eukaryotic arsen 34.5 2.4E+02 0.0052 27.7 9.0 23 44-68 6-28 (113)
405 cd07613 BAR_Endophilin_A1 The 34.4 7.4E+02 0.016 28.2 15.6 42 1290-1336 156-197 (223)
406 PF05911 DUF869: Plant protein 34.1 1.3E+03 0.029 31.0 23.8 13 1006-1018 384-396 (769)
407 PF13851 GAS: Growth-arrest sp 34.1 7E+02 0.015 27.8 14.7 21 1288-1308 97-117 (201)
408 PF06548 Kinesin-related: Kine 34.1 8.5E+02 0.018 30.3 14.6 58 1247-1311 300-357 (488)
409 PF08385 DHC_N1: Dynein heavy 34.0 1.1E+03 0.024 30.1 17.7 13 1209-1221 148-160 (579)
410 KOG0260 RNA polymerase II, lar 33.9 1.5E+03 0.033 31.7 19.2 165 648-816 1439-1603(1605)
411 cd04024 C2A_Synaptotagmin-like 33.8 4.8E+02 0.01 25.9 11.6 29 202-230 3-33 (128)
412 KOG1240 Protein kinase contain 33.8 4.5E+02 0.0098 36.5 13.3 59 1275-1336 565-628 (1431)
413 TIGR02168 SMC_prok_B chromosom 33.5 1.5E+03 0.033 31.5 20.7 10 1080-1089 143-152 (1179)
414 COG5104 PRP40 Splicing factor 33.5 1E+03 0.022 29.5 15.6 12 1275-1286 363-374 (590)
415 PHA03378 EBNA-3B; Provisional 33.4 5.5E+02 0.012 33.3 13.2 14 99-112 103-116 (991)
416 cd07616 BAR_Endophilin_B1 The 33.1 7.8E+02 0.017 28.1 18.9 43 1289-1336 168-210 (229)
417 TIGR01834 PHA_synth_III_E poly 32.9 8.1E+02 0.018 29.4 14.1 38 1256-1293 208-245 (320)
418 TIGR03545 conserved hypothetic 32.7 2.2E+02 0.0049 36.6 10.4 17 1304-1320 261-277 (555)
419 cd07619 BAR_Rich2 The Bin/Amph 32.5 3.4E+02 0.0074 31.3 10.7 20 1140-1159 15-34 (248)
420 KOG0796 Spliceosome subunit [R 32.5 3.3E+02 0.0072 32.3 10.7 25 1250-1274 123-147 (319)
421 PF04124 Dor1: Dor1-like famil 32.5 5.7E+02 0.012 30.7 13.4 24 1243-1266 8-31 (338)
422 cd04031 C2A_RIM1alpha C2 domai 32.4 92 0.002 31.0 5.8 34 197-230 13-46 (125)
423 KOG4672 Uncharacterized conser 32.3 2.2E+02 0.0047 34.6 9.2 10 1062-1071 471-480 (487)
424 cd07642 BAR_ASAP2 The Bin/Amph 32.3 7.8E+02 0.017 27.8 13.3 33 1146-1178 15-52 (215)
425 cd08377 C2C_MCTP_PRT C2 domain 32.3 4.5E+02 0.0098 25.7 10.7 87 202-304 3-90 (119)
426 cd08392 C2A_SLP-3 C2 domain fi 32.2 1.5E+02 0.0032 30.3 7.3 34 197-230 12-46 (128)
427 PF05149 Flagellar_rod: Parafl 32.1 5.8E+02 0.013 30.1 12.6 27 1235-1261 6-32 (289)
428 cd07589 BAR_DNMBP The Bin/Amph 32.0 4.7E+02 0.01 28.8 11.6 16 1326-1341 90-105 (195)
429 PF13608 Potyvirid-P3: Protein 32.0 8.1E+02 0.018 30.8 14.8 260 1048-1337 75-379 (445)
430 PF05957 DUF883: Bacterial pro 32.0 1.6E+02 0.0035 28.4 7.1 70 1247-1318 3-73 (94)
431 cd08521 C2A_SLP C2 domain firs 31.9 1.9E+02 0.0042 28.6 8.0 33 198-230 12-45 (123)
432 KOG3894 SNARE protein Syntaxin 31.8 3.9E+02 0.0086 31.6 11.1 61 1278-1338 247-311 (316)
433 cd07307 BAR The Bin/Amphiphysi 31.8 6.2E+02 0.013 26.5 13.1 13 1331-1343 97-109 (194)
434 PF09745 DUF2040: Coiled-coil 31.8 4.9E+02 0.011 26.9 10.7 27 1335-1361 93-119 (127)
435 cd08406 C2B_Synaptotagmin-12 C 31.6 1.2E+02 0.0026 31.5 6.5 38 193-230 8-45 (136)
436 PF13514 AAA_27: AAA domain 31.5 1.7E+03 0.036 31.4 22.5 55 1289-1343 748-802 (1111)
437 TIGR01884 cas_HTH CRISPR locus 31.5 2.1E+02 0.0045 31.6 8.9 42 104-146 72-115 (203)
438 cd07673 F-BAR_FCHO2 The F-BAR 31.4 8.9E+02 0.019 28.2 15.1 18 1327-1344 206-223 (269)
439 cd04029 C2A_SLP-4_5 C2 domain 31.3 3.1E+02 0.0068 27.7 9.4 98 197-304 12-113 (125)
440 PF05266 DUF724: Protein of un 31.2 7.6E+02 0.016 27.3 14.4 20 1245-1264 127-146 (190)
441 cd08389 C2A_Synaptotagmin-14_1 31.0 1.7E+02 0.0037 29.5 7.5 35 196-230 12-46 (124)
442 PF11932 DUF3450: Protein of u 31.0 8.5E+02 0.018 27.8 14.6 61 1243-1310 43-103 (251)
443 cd07615 BAR_Endophilin_A3 The 31.0 2.4E+02 0.0052 32.0 9.1 42 1290-1336 156-197 (223)
444 cd08616 PI-PLCXD1c Catalytic d 30.9 44 0.00095 39.3 3.5 30 102-131 98-127 (290)
445 PRK02224 chromosome segregatio 30.9 1E+03 0.022 32.4 17.1 23 1282-1304 410-432 (880)
446 KOG4360 Uncharacterized coiled 30.8 1.4E+02 0.0031 37.1 7.6 34 1283-1316 260-293 (596)
447 PF05983 Med7: MED7 protein; 30.8 2.2E+02 0.0047 30.7 8.4 31 1290-1320 71-101 (162)
448 KOG3973 Uncharacterized conser 30.5 1E+03 0.022 28.6 17.6 53 1064-1120 25-77 (465)
449 cd09235 V_Alix Middle V-domain 30.4 8.7E+02 0.019 29.2 14.5 66 1276-1341 239-308 (339)
450 KOG2357 Uncharacterized conser 30.4 2.4E+02 0.0053 34.4 9.3 82 1291-1376 336-417 (440)
451 PF07793 DUF1631: Protein of u 30.3 3E+02 0.0065 36.7 11.6 48 1297-1346 426-473 (729)
452 PF12889 DUF3829: Protein of u 30.3 6.8E+02 0.015 28.6 13.3 57 1277-1340 219-275 (276)
453 COG1463 Ttg2C ABC-type transpo 30.1 3.2E+02 0.0069 33.2 10.8 40 1278-1317 223-262 (359)
454 smart00188 IL10 Interleukin-10 29.9 4E+02 0.0088 27.9 9.7 19 1244-1262 73-91 (137)
455 COG1340 Uncharacterized archae 29.9 6.2E+02 0.013 29.9 12.3 22 1140-1161 55-76 (294)
456 cd08407 C2B_Synaptotagmin-13 C 29.8 1.5E+02 0.0033 30.9 6.9 97 195-301 10-111 (138)
457 cd07602 BAR_RhoGAP_OPHN1-like 29.8 8.4E+02 0.018 27.4 19.5 26 1137-1162 6-31 (207)
458 cd08688 C2_KIAA0528-like C2 do 29.8 3.1E+02 0.0068 26.8 9.0 87 203-303 2-92 (110)
459 cd07658 F-BAR_NOSTRIN The F-BA 29.8 8.8E+02 0.019 27.6 15.3 15 1158-1172 35-49 (239)
460 PF08359 TetR_C_4: YsiA-like p 29.7 1.6E+02 0.0035 29.7 7.1 37 1280-1316 3-39 (133)
461 TIGR02894 DNA_bind_RsfA transc 29.7 6.1E+02 0.013 27.3 11.1 23 1173-1198 34-56 (161)
462 COG4477 EzrA Negative regulato 29.7 1.3E+03 0.028 29.5 21.9 107 1041-1158 62-182 (570)
463 KOG2196 Nuclear porin [Nuclear 29.6 9E+02 0.02 27.7 13.7 46 1294-1339 181-230 (254)
464 TIGR02680 conserved hypothetic 29.5 7.5E+02 0.016 35.7 15.7 14 1058-1071 140-153 (1353)
465 cd07667 BAR_SNX30 The Bin/Amph 29.5 9.2E+02 0.02 27.7 13.6 13 1160-1172 5-17 (240)
466 PF06705 SF-assemblin: SF-asse 29.4 9E+02 0.019 27.6 16.2 206 1140-1377 5-230 (247)
467 KOG2180 Late Golgi protein sor 29.3 1.5E+03 0.032 30.1 21.0 50 1107-1162 72-122 (793)
468 PF07464 ApoLp-III: Apolipopho 29.3 2.3E+02 0.0049 30.4 8.1 20 1325-1344 96-115 (155)
469 COG2317 Zn-dependent carboxype 29.1 3E+02 0.0065 34.3 10.0 41 1303-1343 149-189 (497)
470 PF07439 DUF1515: Protein of u 29.0 2.7E+02 0.0058 27.9 7.7 53 1250-1305 9-61 (112)
471 PF05149 Flagellar_rod: Parafl 28.9 4.9E+02 0.011 30.7 11.4 54 1327-1382 207-260 (289)
472 PRK11448 hsdR type I restricti 28.8 5E+02 0.011 36.5 13.4 21 1162-1182 77-97 (1123)
473 COG1283 NptA Na+/phosphate sym 28.8 1E+03 0.022 30.6 14.8 43 1324-1366 445-490 (533)
474 PF11559 ADIP: Afadin- and alp 28.7 3.2E+02 0.007 28.7 9.3 119 1188-1314 13-131 (151)
475 KOG0624 dsRNA-activated protei 28.7 9.5E+02 0.021 29.1 13.4 13 1332-1344 359-371 (504)
476 PF14643 DUF4455: Domain of un 28.6 1.3E+03 0.028 29.2 17.4 28 1276-1303 308-335 (473)
477 KOG3156 Uncharacterized membra 28.6 2E+02 0.0044 32.1 7.7 39 1225-1266 102-140 (220)
478 COG2882 FliJ Flagellar biosynt 28.6 7.4E+02 0.016 26.4 11.6 31 1280-1310 67-97 (148)
479 KOG4025 Putative apoptosis rel 28.6 1.7E+02 0.0036 31.3 6.7 52 1064-1117 54-106 (207)
480 KOG0964 Structural maintenance 28.5 1.7E+03 0.037 30.6 19.9 207 1140-1375 785-1007(1200)
481 PF06602 Myotub-related: Myotu 28.4 1.4E+02 0.0031 36.1 7.4 40 118-158 230-270 (353)
482 cd07615 BAR_Endophilin_A3 The 28.4 9.2E+02 0.02 27.4 14.1 24 1138-1161 5-28 (223)
483 cd01448 TST_Repeat_1 Thiosulfa 28.3 94 0.002 30.9 5.0 29 116-146 76-104 (122)
484 cd01443 Cdc25_Acr2p Cdc25 enzy 28.2 1.2E+02 0.0026 29.9 5.7 33 100-132 47-79 (113)
485 PRK10476 multidrug resistance 28.2 6.6E+02 0.014 30.0 13.1 32 1286-1317 116-147 (346)
486 PF15254 CCDC14: Coiled-coil d 28.1 1.6E+03 0.034 30.1 16.5 211 1139-1366 326-547 (861)
487 PF09731 Mitofilin: Mitochondr 28.0 7.6E+02 0.016 31.9 14.4 122 1231-1379 247-369 (582)
488 cd07653 F-BAR_CIP4-like The F- 28.0 9.3E+02 0.02 27.3 14.9 106 1244-1374 67-180 (251)
489 PRK09866 hypothetical protein; 27.9 1.3E+03 0.029 30.5 15.7 187 1112-1347 341-533 (741)
490 PHA01732 proline-rich protein 27.9 76 0.0016 30.1 3.7 31 854-884 5-35 (94)
491 PF05010 TACC: Transforming ac 27.8 9.1E+02 0.02 27.1 14.3 123 1243-1378 34-159 (207)
492 PF03194 LUC7: LUC7 N_terminus 27.8 2.2E+02 0.0047 33.0 8.3 153 1211-1365 84-252 (254)
493 COG1826 TatA Sec-independent p 27.8 94 0.002 30.3 4.6 66 1310-1379 16-81 (94)
494 KOG2077 JNK/SAPK-associated pr 27.7 1.1E+03 0.024 30.2 14.2 141 1216-1384 303-445 (832)
495 cd08680 C2_Kibra C2 domain fou 27.7 2.4E+02 0.0052 28.7 7.8 105 188-299 2-107 (124)
496 cd01528 RHOD_2 Member of the R 27.6 1.9E+02 0.0041 27.8 6.8 81 43-147 3-83 (101)
497 PF05960 DUF885: Bacterial pro 27.6 1.4E+03 0.03 29.2 16.6 252 1116-1380 4-281 (549)
498 cd04054 C2A_Rasal1_RasA4 C2 do 27.5 3.7E+02 0.008 26.9 9.2 85 201-299 1-85 (121)
499 PF05278 PEARLI-4: Arabidopsis 27.4 3.6E+02 0.0078 31.4 9.7 146 1155-1316 113-264 (269)
500 PRK04778 septation ring format 27.4 8.3E+02 0.018 31.6 14.4 213 1136-1361 194-426 (569)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=6.7e-69 Score=628.79 Aligned_cols=390 Identities=22% Similarity=0.442 Sum_probs=348.7
Q ss_pred cCCCCCCcCCCCCCCCCccccccccc--ccCCccccccccccccccCcccchhhHHHHhhhcCCCCCCC--CCCCCCCCC
Q 000624 958 AHASPRLQSQPRKNNLKPYHWLKLTR--AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLG--GKSGKSNRR 1033 (1385)
Q Consensus 958 ~~~~~~~~~~~pk~klK~LhW~kI~~--~~~~TIW~~~~~~~~~~~~~~~D~~eLE~lF~~k~~~~~~~--~~~k~~~~~ 1033 (1385)
+-++.....-+++..||+++|.+|.. -.++.+|-.++++.. ...-=+.+|+..|+.+....+.. .-.|+.+
T Consensus 611 P~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~---en~dlfakL~~~Fatq~k~~k~~e~~eekkt~-- 685 (1102)
T KOG1924|consen 611 PFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKL---ENDDLFAKLALKFATQPKVKKEQEGGEEKKTG-- 685 (1102)
T ss_pred CCCCCccccCCCCCccccCCccccCccccCccceeeecchhhc---cchHHHHHHHHHhhccccccccccccccccch--
Confidence 34556667778899999999999963 458899999875421 11112788999999874333211 0111111
Q ss_pred CCCCCCcchhhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhH
Q 000624 1034 SGPKPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCE 1113 (1385)
Q Consensus 1034 ~~~k~~~i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~E 1113 (1385)
.++|.+...|||.|.+||++|+|+.|||+++||+.+|+++|+++|++..|++|++++|..|-+..|.+++...+.|.+.|
T Consensus 686 ~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~E 765 (1102)
T KOG1924|consen 686 TKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPE 765 (1102)
T ss_pred hhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHH
Confidence 12456667899999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeec
Q 000624 1114 QFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRL 1193 (1385)
Q Consensus 1114 qFll~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL 1193 (1385)
||...|..|.++.-||.+++||.+|.+.+++|+..|-.+..||++||+|++|.+||++||.+|||||.|+...+|+||.|
T Consensus 766 QF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~i 845 (1102)
T KOG1924|consen 766 QFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNI 845 (1102)
T ss_pred HHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCC
Q 000624 1194 DSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGE 1273 (1385)
Q Consensus 1194 ~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~ 1273 (1385)
++|+||.|||+.|+|+||||||++++++++|+.+.|.+||.+|+.|+||+.+.|+..++.++..+.+++..+....-.+.
T Consensus 846 s~L~kL~dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~ 925 (1102)
T KOG1924|consen 846 SFLCKLRDTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGN 925 (1102)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887654444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1274 VSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFER 1352 (1385)
Q Consensus 1274 ~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ek 1352 (1385)
..|.|.++|..|.++|.+++..|..++..|++.|++|.+||--|+++.+.|+||.-|.+|...|..|+.||.+++++|.
T Consensus 926 e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~E 1004 (1102)
T KOG1924|consen 926 EHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEE 1004 (1102)
T ss_pred chhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999988666543
No 2
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.4e-64 Score=609.85 Aligned_cols=385 Identities=30% Similarity=0.562 Sum_probs=349.1
Q ss_pred CCCCCCCCCccccccccc-ccCCccccccccccccccCcccchhhHHHHhhhcCCCCCCCCCCCCCC--CCCCCCCCcch
Q 000624 966 SQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSN--RRSGPKPERVQ 1042 (1385)
Q Consensus 966 ~~~pk~klK~LhW~kI~~-~~~~TIW~~~~~~~~~~~~~~~D~~eLE~lF~~k~~~~~~~~~~k~~~--~~~~~k~~~i~ 1042 (1385)
...++.+||+|||++|.. .+.+|||++++.. ..+|+++||++|+.+......+ +..... ...+++.+.++
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~------~~~d~~~lE~lF~~k~~~~~~~-~~~~~~~~~~~~~~~~~v~ 75 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDEN------SEGDLDELEELFAAKEKTKSAS-KDVSEKKSILKKKVSQEFK 75 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCcc------cccCHHHHHHHhCcCccccCcc-ccccccccccccccccceE
Confidence 356889999999999975 5789999998643 2789999999999865443211 000001 11234567899
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCC-CCCcchhHHHHHHHhC
Q 000624 1043 LIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGD-KGNLGKCEQFFLELMK 1121 (1385)
Q Consensus 1043 lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd-~~~L~~~EqFll~L~~ 1121 (1385)
|||.||++||+|+|++|+++.++|++||++||...|+.|.|+.|++++||.||++.|++|.|+ .+.|+.+|||+++|++
T Consensus 76 ild~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ 155 (432)
T smart00498 76 ILDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISN 155 (432)
T ss_pred eechhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhc
Q 000624 1122 VPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTD 1201 (1385)
Q Consensus 1122 Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~d 1201 (1385)
||++..||++|+|+.+|.+.+.+|+..|..+..||++|++|+.|+.||++||++|||||+|+.||+|.||+|++|.||.|
T Consensus 156 ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d 235 (432)
T smart00498 156 IPYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSD 235 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHH
Q 000624 1202 TRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKL 1281 (1385)
Q Consensus 1202 tKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~ 1281 (1385)
+|++|+++||||||++++.+++|++++|.+||.+|..|++++ +.|.++++++.++++.++.++..........|.|..+
T Consensus 236 ~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~ 314 (432)
T smart00498 236 VKSADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEV 314 (432)
T ss_pred hhccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999987766544333345899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKA 1358 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~ke 1358 (1385)
|..|+..|..++..|+..++++.+.|++++.|||||+.....++||++|.+|+..|++|++||.++++.|+++..+.
T Consensus 315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~ 391 (432)
T smart00498 315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQL 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999998887777665544
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=7.9e-61 Score=571.25 Aligned_cols=366 Identities=38% Similarity=0.673 Sum_probs=320.0
Q ss_pred CCCCCCCCCccccccccc-ccCCccccccccccccccCcccchhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCcchhh
Q 000624 966 SQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSNRRSGPKPERVQLI 1044 (1385)
Q Consensus 966 ~~~pk~klK~LhW~kI~~-~~~~TIW~~~~~~~~~~~~~~~D~~eLE~lF~~k~~~~~~~~~~k~~~~~~~~k~~~i~lL 1044 (1385)
...++.+||+|||++|.. ...+|||+++...+. ...+|+++||++|+.+....... .......++++.++||
T Consensus 4 ~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~---~~~~d~~~le~~F~~~~~~~~~~----~~~~~~~~~~~~~~iL 76 (370)
T PF02181_consen 4 KPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEF---NIDIDFEELEELFAKKEKEKKSK----KKQASKKKKKKKISIL 76 (370)
T ss_dssp ----SS-B------EESSGGCTTSCCCCTCCHHH---HCTSHHHHHHHHTBSCECHHHH--------HCCCCTTCCESSS
T ss_pred CCCCCCCCcCCCceecCcccccCCccccCccccc---chhhhHHHHHHHhcccccccccc----cccccccccccccccc
Confidence 457889999999999985 678999999865432 22789999999999876543321 1112234678889999
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCCCc
Q 000624 1045 ELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPR 1124 (1385)
Q Consensus 1045 D~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~Ipr 1124 (1385)
|.+|++||+|+|++|+++.++|+++|++||...|+.|.|+.|++++||.||++.|++|.++.+.|+.+|+|+++|++||+
T Consensus 77 d~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~ 156 (370)
T PF02181_consen 77 DPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPR 156 (370)
T ss_dssp -HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTT
T ss_pred chHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccc
Q 000624 1125 VESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRA 1204 (1385)
Q Consensus 1125 l~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs 1204 (1385)
++.||++|+|+.+|.++++++...|+.+..||++|++|..|++||++||++|||||+|+.+|+|.||+|++|.||.++|+
T Consensus 157 ~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks 236 (370)
T PF02181_consen 157 LKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKS 236 (370)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHH
Q 000624 1205 RNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKE 1284 (1385)
Q Consensus 1205 ~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~ 1284 (1385)
+|+++||||||++++.+++++++.|.+||..|..|+++++++|.+++++|++++++++.++.....+....+.|...|..
T Consensus 237 ~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~ 316 (370)
T PF02181_consen 237 NDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKE 316 (370)
T ss_dssp STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887755567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 000624 1285 FLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFV 1338 (1385)
Q Consensus 1285 Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fk 1338 (1385)
|++.++.++..|++.+.++++.|++++.|||||++.+..++||++|.+|+++|+
T Consensus 317 f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 317 FLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999996
No 4
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-54 Score=508.06 Aligned_cols=303 Identities=23% Similarity=0.364 Sum_probs=246.3
Q ss_pred cccccccCCCCCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCc
Q 000624 4 FRKFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDM 83 (1385)
Q Consensus 4 ~rr~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~ 83 (1385)
.||+.+++.||||+|||+||||| +||++++ |+.|||+++||++||+++|+|| |+|||||.|+.+ ..+.|++
T Consensus 3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~y-----d~~~f~g 73 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLY-----DPSRFHG 73 (434)
T ss_pred cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccC-----Ccccccc
Confidence 47899999999999999999999 9999999 8899999999999999999986 999999965443 3578999
Q ss_pred eeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhch
Q 000624 84 TVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAP 163 (1385)
Q Consensus 84 ~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~ 163 (1385)
+|..|+|+|||+| +|++|+.||++|++||++|++||||||||+||||+ |+||||||+|++++.++++||++|..++
T Consensus 74 ~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrt-g~~icA~L~~~~~~~ta~eald~~~~kR- 149 (434)
T KOG2283|consen 74 RVARFGFDDHNPP--PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRT-GVMICAYLIYSGISATAEEALDYFNEKR- 149 (434)
T ss_pred ceeecCCCCCCCC--cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcce-EEEEeHHHHhhhhcCCHHHHHHHHhhhh-
Confidence 9999999999998 99999999999999999999999999999999995 9999999999999999999999997443
Q ss_pred hhhhccCCCCCCCCcHHHHHHHHHHhhcCCCCCCCCc--ceEEeEEEEeeccccC-CCCcceeEEEEEecCCccccCCCC
Q 000624 164 RELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDR--ALTLDCVILRVIPNFD-GEGGCCPIFRIYGQDPLMVADRTP 240 (1385)
Q Consensus 164 ~~~~~gv~~~~t~PSQ~RYv~Yf~~ll~~~~~~p~~~--~l~L~~I~l~~iP~f~-~~~gcrP~~~Iy~~~~~~~~~~~~ 240 (1385)
+..+....+++|||+|||+||++++.....+++.+ .++|+.++|+.||+|. ..+||++++.||+..
T Consensus 150 --~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k--------- 218 (434)
T KOG2283|consen 150 --FDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGK--------- 218 (434)
T ss_pred --ccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecc---------
Confidence 33332233389999999999999655445556776 9999999999999954 448999999999874
Q ss_pred cEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEEEecCCccc-------ccceEEEEEeecccccC--CeEEee
Q 000624 241 KVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQE-------REEMMFRVMFNTAFIRS--NILMLN 311 (1385)
Q Consensus 241 k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~~~~~-------~~~~~Fr~~FnT~FI~~--n~l~l~ 311 (1385)
+.+|+..... .++.|.. + ..|++++++.++ ++|||.+...+ .+...|.++|||+++.. ..+.+.
T Consensus 219 ~~~~~~~s~~-~~~~~~~-~-g~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T KOG2283|consen 219 KKVYSFSSDG-IMRLGEL-D-GKIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFF 291 (434)
T ss_pred eeeEEeccCC-ccccccc-c-cceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeecc
Confidence 5577776555 6777766 4 347788887777 89999765433 34557888888888874 445555
Q ss_pred cccCcccccCCCCCCCCcEEEEEEEec
Q 000624 312 RDEIDILWNSKDLFSKEFRAEVLFSEM 338 (1385)
Q Consensus 312 k~eLD~~~~~k~~fp~dF~vel~F~~~ 338 (1385)
..+++.-. ....+..-|.+.+.-...
T Consensus 292 ~~~~~~~~-~~e~~~~~~~~~~~~~~~ 317 (434)
T KOG2283|consen 292 QADLPIYV-SNEFVFNFFQVSLEVENT 317 (434)
T ss_pred cccCCccc-cccccccccceeeecccC
Confidence 66666532 234556666666654333
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=9.5e-50 Score=473.30 Aligned_cols=411 Identities=28% Similarity=0.456 Sum_probs=355.6
Q ss_pred CCCcCCCCCCCCCccccccccc-ccCCccccccccccccccCcccchhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCc
Q 000624 962 PRLQSQPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSNRRSGPKPER 1040 (1385)
Q Consensus 962 ~~~~~~~pk~klK~LhW~kI~~-~~~~TIW~~~~~~~~~~~~~~~D~~eLE~lF~~k~~~~~~~~~~k~~~~~~~~k~~~ 1040 (1385)
+.......+.++-.++|..+.. .+++|+|+++ .|..+..++|++++|+.|..-..........+...+...+...+
T Consensus 360 ~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~---~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk 436 (830)
T KOG1923|consen 360 TIKKPTPTKTKSPSLNWLALKPIQVKGTVFHEL---NDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQK 436 (830)
T ss_pred hhcCCCcccccCCCccccccCccccccchhhhh---hHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhh
Confidence 4455667888999999999974 6788999987 45566778999999999988322211110001111111345778
Q ss_pred chhhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccC---CCCCcchhHHHHH
Q 000624 1041 VQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNG---DKGNLGKCEQFFL 1117 (1385)
Q Consensus 1041 i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~g---d~~~L~~~EqFll 1117 (1385)
+++||.+|+.|++|-++ +.+..++|+.||..+|...|..+.++.|.+++||++|...+++|.. ..+.|...++|++
T Consensus 437 ~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml 515 (830)
T KOG1923|consen 437 RTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFML 515 (830)
T ss_pred hhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhh
Confidence 99999999999999999 9999999999999999999999999999999999999999999864 4568999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchh
Q 000624 1118 ELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLL 1197 (1385)
Q Consensus 1118 ~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~ 1197 (1385)
.+.+|.|+++|+..|.|+.+|.+.+.-+.+++..+..|...+++|++|+.||++||++|||||.+ .||.++||+|.+|.
T Consensus 516 ~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD 594 (830)
T KOG1923|consen 516 SLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLD 594 (830)
T ss_pred hhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 58999999999999
Q ss_pred hhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhh
Q 000624 1198 KLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGN 1277 (1385)
Q Consensus 1198 KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~ 1277 (1385)
-|.++|++|.++|||||++..++++++.+..|.+||.-+++|+.++++.+..||.+|.+|....++|.+....+
T Consensus 595 ~ll~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~------ 668 (830)
T KOG1923|consen 595 SLLDTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLD------ 668 (830)
T ss_pred HHhhccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1278 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEK 1357 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~k 1357 (1385)
.+|++|++..+.++++|++.++.+...|+.++.||||.++..+...||..|..|++.|+++..||+.+.+.|+...++
T Consensus 669 --~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~qe~ 746 (830)
T KOG1923|consen 669 --VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQEA 746 (830)
T ss_pred --hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999998877777766554
Q ss_pred HHHHH----HHhh--ccCcchhhhhcccccCCCC
Q 000624 1358 AVENE----KLKT--QKGQSEHLVQNPLKSSTIK 1385 (1385)
Q Consensus 1358 eae~e----k~~~--~k~~~~~~~~~~lk~~~~~ 1385 (1385)
.++++ ..+. .+....++++..||..+||
T Consensus 747 ~~~k~~~~~~~ks~a~~~~~q~~li~El~r~q~~ 780 (830)
T KOG1923|consen 747 RAEKEAEREAAKSSAHPKLQQAALIRELKRRQIK 780 (830)
T ss_pred hhccccccccccCCCchhhhHHHHHHHHHHhccc
Confidence 33332 2222 2234455666788777765
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.8e-42 Score=388.05 Aligned_cols=362 Identities=22% Similarity=0.395 Sum_probs=309.1
Q ss_pred CCCCCCCccccccccc---------ccCCccccccccccccccCcccchhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCC
Q 000624 968 PRKNNLKPYHWLKLTR---------AMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLGGKSGKSNRRSGPKP 1038 (1385)
Q Consensus 968 ~pk~klK~LhW~kI~~---------~~~~TIW~~~~~~~~~~~~~~~D~~eLE~lF~~k~~~~~~~~~~k~~~~~~~~k~ 1038 (1385)
..++++-+|||..++- ...+|+|+.++. ..+|...||.||..+..+..- .|+.+ ..+.
T Consensus 279 ~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~-------~~~D~~r~~~LFEsr~~~~~P---~KK~~---E~r~ 345 (817)
T KOG1925|consen 279 PTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP-------VSVDTARLEHLFESRAKEVLP---SKKAG---EGRR 345 (817)
T ss_pred cccCceeEEEeecceecCCCCCccccccchhhhccCc-------ceecHHHHHHHHHHhhhhhcc---chhhc---ccce
Confidence 3456677899998862 236799999853 248999999999987654432 12221 2355
Q ss_pred CcchhhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhcc-CCCC-CcchhHHHH
Q 000624 1039 ERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYN-GDKG-NLGKCEQFF 1116 (1385)
Q Consensus 1039 ~~i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~-gd~~-~L~~~EqFl 1116 (1385)
...++||.||.|.|+|.|.+|. ++.-|..||+++|+-+++.|.||.|++|+||+||++.|..-. .+.+ .||.+|||+
T Consensus 346 ~~~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfL 424 (817)
T KOG1925|consen 346 TMTTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFL 424 (817)
T ss_pred eeeeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence 6789999999999999999986 677899999999999999999999999999999999988743 3444 699999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccch
Q 000624 1117 LELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSL 1196 (1385)
Q Consensus 1117 l~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL 1196 (1385)
+.|+.|+.+-+||+.|+|+..|++.-.+|.+-|-.+..++++|.++..|+-+|.++|+||||||+.. ++||.|+.|
T Consensus 425 LtLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT~----~KgFeLsYL 500 (817)
T KOG1925|consen 425 LTLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGTQ----SKGFELSYL 500 (817)
T ss_pred HHHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCcc----ccceehHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999764 679999999
Q ss_pred hhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchh
Q 000624 1197 LKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSG 1276 (1385)
Q Consensus 1197 ~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d 1276 (1385)
.|..++|+...|.||+|+||.++.+.|+|-.+++.|+..+...+|||+++|.+.+..|++..+..=..|..- +......
T Consensus 501 eKvsEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~I-akhe~~p 579 (817)
T KOG1925|consen 501 EKVSEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSI-AKHELAP 579 (817)
T ss_pred hhchhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHH-HhhhccH
Confidence 999999999999999999999999999999999999999999999999999988887776544322222211 1111235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1277 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA---RCPFEQVVSTLLNFVKMFVLAHEENCRQL 1348 (1385)
Q Consensus 1277 ~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~---~~~~eeff~~l~~Fi~~fkka~een~k~~ 1348 (1385)
.....|..|++.|.+++..|+..|.++.+.|..++.|||..+. .....+||.++.+|..+|+..++...+|+
T Consensus 580 ~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~ 654 (817)
T KOG1925|consen 580 ALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQ 654 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6788999999999999999999999999999999999998764 34678999999999999999988776653
No 7
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.2e-40 Score=434.95 Aligned_cols=381 Identities=39% Similarity=0.602 Sum_probs=333.7
Q ss_pred CCCCCCCCccccccccc-ccCCccccccccccccccCcccch---hhHHHHhhhcCCCCCCCCCCCCCCCCCC--CCCCc
Q 000624 967 QPRKNNLKPYHWLKLTR-AMQGSLWAEAQKSDEASKAPEFDM---SELESLFSAAAPNSDLGGKSGKSNRRSG--PKPER 1040 (1385)
Q Consensus 967 ~~pk~klK~LhW~kI~~-~~~~TIW~~~~~~~~~~~~~~~D~---~eLE~lF~~k~~~~~~~~~~k~~~~~~~--~k~~~ 1040 (1385)
..+..+||++||+++.. .....+|.++..... ..|. +.+|.+|+......... .+..+.... ...+.
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~e~lf~~~~~~~~~~--~~~~~~~~~~~~~~~~ 462 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSS-----LFDPPLSELMEALFGLVKFLPSDN--GGDTGREEKTAVEKKR 462 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCc-----CCCCCcccccccchhhhhcccCCC--CCCCcccccccccccc
Confidence 56789999999999963 567789999865432 2333 88999998764332211 011111111 12256
Q ss_pred chhhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHH-H
Q 000624 1041 VQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLE-L 1119 (1385)
Q Consensus 1041 i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~-L 1119 (1385)
+.++|.++.+|++|+|+.|++..+++.++|+.+|+..+..++|++|.+++|+++|...++.|.++...|+.+|+|+.+ +
T Consensus 463 ~~v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~ 542 (833)
T KOG1922|consen 463 LKVLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEEL 542 (833)
T ss_pred ccccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999999999999999999999998999999999998 5
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhh
Q 000624 1120 MKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKL 1199 (1385)
Q Consensus 1120 ~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL 1199 (1385)
..|+.+..|++++.|+..|...+..+...+..+..+|++++++.+|.+++++||..||+||.|+.||+|.||+|++|.||
T Consensus 543 ~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl 622 (833)
T KOG1922|consen 543 SGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKL 622 (833)
T ss_pred hcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHH-HHHHHHHHhhCc---------------cccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 000624 1200 TDTRARNNKMTLM-HYLCKVLAEKLP---------------ELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQ 1263 (1385)
Q Consensus 1200 ~dtKs~d~k~TLL-hyl~k~l~ek~p---------------ell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~ 1263 (1385)
.|+|+.++++++| ||+.+++..... .+.+|.+||.+++.|++++++.+.+++.++.++++++++
T Consensus 623 ~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~ 702 (833)
T KOG1922|consen 623 SDVKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKR 702 (833)
T ss_pred hhhhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996655 556666655443 678999999999999999999999999999999999999
Q ss_pred HHh-hccCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHH
Q 000624 1264 ELT-ASEND-GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP-ARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1264 el~-~se~d-~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp-~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
.+. .+.++ +...+.|...|..|+..++.+++.|..+++++...++++++|||+++ ....++++|.++.+|+..|+++
T Consensus 703 ~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~ 782 (833)
T KOG1922|consen 703 ELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKA 782 (833)
T ss_pred HhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHH
Confidence 995 66555 55678999999999999999999999999999999999999999999 5788999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000624 1341 HEENCRQLEFERKK 1354 (1385)
Q Consensus 1341 ~een~k~~e~Ekkk 1354 (1385)
++|+.+.+++|+..
T Consensus 783 ~~e~~~~~~k~~~~ 796 (833)
T KOG1922|consen 783 HEENKKAEEKEKTY 796 (833)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999877666543
No 8
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.93 E-value=6.6e-26 Score=232.47 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=108.3
Q ss_pred CCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEE
Q 000624 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVV 277 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~ 277 (1385)
+.++|+|++|+|++||.|+.++|||||++||+.+ +.+|++...+...+.|.+.. ..+.++.++.|+|||+
T Consensus 2 ~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV~ 71 (134)
T PF10409_consen 2 PPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDVL 71 (134)
T ss_dssp S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEEE
T ss_pred CCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCEE
Confidence 5688999999999999998889999999999975 56776666666666664433 5577888899999999
Q ss_pred EEEEecCCcccccceEEEEEeeccccc--CCeEEeecccCcccccC-CCCCCCCcEEEEEEEe
Q 000624 278 LECISLDSDQEREEMMFRVMFNTAFIR--SNILMLNRDEIDILWNS-KDLFSKEFRAEVLFSE 337 (1385)
Q Consensus 278 i~~~h~~~~~~~~~~~Fr~~FnT~FI~--~n~l~l~k~eLD~~~~~-k~~fp~dF~vel~F~~ 337 (1385)
|+|||.+.....+++||||||||+||. ++.|+|+|+|||+++++ .++|++||+|||+|++
T Consensus 72 i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 72 IKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred EEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 999999866677889999999999999 99999999999999864 3899999999999986
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.59 E-value=1.4e-14 Score=153.84 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=116.0
Q ss_pred CCCCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCC
Q 000624 12 PPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRH 91 (1385)
Q Consensus 12 ~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~ 91 (1385)
.|-.++||+.|+|+| .-|.+.. +.+-++.|+..+= ..|.|+|++.|+.. .+...+..+.+||+.
T Consensus 7 ~~~~~~~~~~r~~~~--~~P~~~~--------~~~~l~~L~~~gI---~~Iv~l~~~~~~~~---~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLIL--DAPSPSN--------LPLYIKELQRYNV---THLVRVCGPTYDAE---LLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEe--cCCCccc--------HHHHHHHHHhCCC---eEEEecCCCCCCHH---HHHHCCCEEEecCCC
Confidence 456799999999999 5666532 2222455555432 67999998766432 234567789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhcc
Q 000624 92 YEGCPLLTMETVHHFLRSSESWLSL--GHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQL 169 (1385)
Q Consensus 92 d~~~P~p~L~~l~~~c~~~~~WL~~--d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~g 169 (1385)
|++.| +.+.+..|++-++..+.. ..++.|+|||.+|.||+ |+++||||+..+.+ +.++|+.++.++++ + .
T Consensus 71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRS-gt~~a~yL~~~~~~-s~~eAi~~vr~~R~-~---~ 142 (166)
T PTZ00242 71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRA-PILVALALVEYGGM-EPLDAVGFVREKRK-G---A 142 (166)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHCC-C---C
Confidence 98876 899899999999998876 67889999999999995 99999999998866 78999999854432 1 1
Q ss_pred CCCCCCCCcHHHHHHHHHHhhc
Q 000624 170 MSPLNPLPSQLRYLQYVSRRNV 191 (1385)
Q Consensus 170 v~~~~t~PSQ~RYv~Yf~~ll~ 191 (1385)
+ ..-|++||+.|.+.+.
T Consensus 143 i-----~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 143 I-----NQTQLQFLKKYKPRKK 159 (166)
T ss_pred c-----hHHHHHHHHHHHHHhc
Confidence 2 4689999999987544
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=1.3e-11 Score=148.16 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD------ALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1346 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~------~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k 1346 (1385)
..|++...+=++....-...++.+|+.+.+-|. .+-+||+. ...|-..|.+.+.+-.+.+++.+|
T Consensus 935 ~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaD------i~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen 935 TSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFAD------IRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655555555555555666666655442 23344443 233444444455555444444443
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.37 E-value=4.2e-12 Score=139.21 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=104.9
Q ss_pred ceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCC
Q 000624 16 LLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1385)
Q Consensus 16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~ 95 (1385)
+.|-.=|+|+| .-|.. ..+-.+| ..|+..+= ..|..+|++.|+.. .+...+..+.++||.|+++
T Consensus 87 ie~~~~rfLi~--~~P~~----~~~~~yl----~eLk~~gV---~~lVrlcE~~Yd~~---~~~~~GI~~~~lpipDg~a 150 (241)
T PTZ00393 87 IEHGKIKILIL--DAPTN----DLLPLYI----KEMKNYNV---TDLVRTCERTYNDG---EITSAGINVHELIFPDGDA 150 (241)
T ss_pred hccCceeEEEe--CCCCH----HHHHHHH----HHHHHcCC---CEEEECCCCCCCHH---HHHHcCCeEEEeecCCCCC
Confidence 33444489999 46654 2232332 44554443 46888999877522 2445688999999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhccCCCCCC
Q 000624 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNP 175 (1385)
Q Consensus 96 P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~gv~~~~t 175 (1385)
| +.+.|.+|+..++..+.. ...|+|||++|.||+ |+|+||||+..|+ +.++|++++...++ +. +
T Consensus 151 P--s~~~i~~~l~~i~~~l~~--g~~VaVHC~AGlGRT-Gtl~AayLI~~Gm--speeAI~~VR~~RP-gA------I-- 214 (241)
T PTZ00393 151 P--TVDIVSNWLTIVNNVIKN--NRAVAVHCVAGLGRA-PVLASIVLIEFGM--DPIDAIVFIRDRRK-GA------I-- 214 (241)
T ss_pred C--CHHHHHHHHHHHHHHHhc--CCeEEEECCCCCCHH-HHHHHHHHHHcCC--CHHHHHHHHHHHCC-CC------C--
Confidence 7 899999999988888754 447999999999995 9999999998654 88999999844332 21 2
Q ss_pred CCcHHHHHHHHHHhhc
Q 000624 176 LPSQLRYLQYVSRRNV 191 (1385)
Q Consensus 176 ~PSQ~RYv~Yf~~ll~ 191 (1385)
...|++||.-|.....
T Consensus 215 n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 215 NKRQLQFLKAYKKKKK 230 (241)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 3589999998887543
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=99.35 E-value=1.1e-08 Score=136.34 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 000624 1148 SLNIINSASEEVRN 1161 (1385)
Q Consensus 1148 ~L~~v~~A~~eLr~ 1161 (1385)
.|..+++||+.|+.
T Consensus 3110 alAlLi~ACr~i~r 3123 (3151)
T PHA03247 3110 ALAVLIEACRRIRR 3123 (3151)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555566655543
No 13
>PHA03247 large tegument protein UL36; Provisional
Probab=99.33 E-value=1.2e-08 Score=136.09 Aligned_cols=8 Identities=25% Similarity=-0.035 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 000624 45 GGIVGQLR 52 (1385)
Q Consensus 45 ~~V~~~L~ 52 (1385)
..|..||+
T Consensus 1914 ~RvaA~mr 1921 (3151)
T PHA03247 1914 RRGEAYLR 1921 (3151)
T ss_pred HHHHHHHh
Confidence 34444444
No 14
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.20 E-value=1.4e-10 Score=122.93 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=112.0
Q ss_pred cCCCCCceeeccc-eEEEecCCC---CCCcchHHHh-hcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCce
Q 000624 10 RKPPDGLLEISER-VFVFDCCFT---TDILEEEEYK-EYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMT 84 (1385)
Q Consensus 10 ~~~~lDLtYIT~R-Iiam~~~fP---a~~~~e~~YR-n~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~ 84 (1385)
+=...|.++|+.. +|++ +-| +-|+ |..|- +-...+..+|+ +| + -=.|+-|.++-|+.. .+..-+..
T Consensus 47 ~ve~gdfnwI~p~~~i~f--~~p~~~s~gi-~~~f~~~~~~~~~~~~~-~~-~-v~s~vrln~~~yd~~---~f~~~Gi~ 117 (225)
T KOG1720|consen 47 AVENGDFNWIIPDRFIAF--AGPHLKSRGI-ESGFPLHLPQPYIQYFK-NN-N-VTSIVRLNKRLYDAK---RFTDAGID 117 (225)
T ss_pred ccCCCCcceeccchhhhh--cCccccccch-hhcccccCChhHHHHhh-hc-c-cceEEEcCCCCCChH---HhcccCce
Confidence 3456899999995 6776 333 2245 55555 45555667777 22 2 135777888777632 23444556
Q ss_pred eecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchh
Q 000624 85 VMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPR 164 (1385)
Q Consensus 85 V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~ 164 (1385)
-.|++|.|..+| +++.+.+|++.+++-++ .-.++|||++|-||| |+||||||||... -++.+|++.+. .+|.
T Consensus 118 h~~l~f~Dg~tP--~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGRT-G~liAc~lmy~~g-~ta~eaI~~lR-~~Rp 189 (225)
T KOG1720|consen 118 HHDLFFADGSTP--TDAIVKEFVKIVENAEK---GGKIAVHCKAGLGRT-GTLIACYLMYEYG-MTAGEAIAWLR-ICRP 189 (225)
T ss_pred eeeeecCCCCCC--CHHHHHHHHHHHHHHHh---cCeEEEEeccCCCch-hHHHHHHHHHHhC-CCHHHHHHHHH-hcCC
Confidence 677888998887 99999999999999887 446999999999995 9999999999954 56777999873 3332
Q ss_pred hhhccCCCCCCCCcHHHHHHHHHHh
Q 000624 165 ELLQLMSPLNPLPSQLRYLQYVSRR 189 (1385)
Q Consensus 165 ~~~~gv~~~~t~PSQ~RYv~Yf~~l 189 (1385)
+- | ..|-|.-|+.-|..+
T Consensus 190 G~---V----~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 190 GA---V----IGPQQHKLLHKQRDL 207 (225)
T ss_pred cc---c----cCHHHHHHHHHHHHH
Confidence 22 2 578899888887773
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.02 E-value=5.2e-10 Score=116.32 Aligned_cols=124 Identities=14% Similarity=0.177 Sum_probs=77.5
Q ss_pred ccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCC----cc-ccccccccccCceeecCCCCCCC
Q 000624 20 SERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGE----HQ-SQIGQVLSEYDMTVMDYPRHYEG 94 (1385)
Q Consensus 20 T~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~----~~-~~~~~~~s~~~~~V~~~P~~d~~ 94 (1385)
+.+|..+ ..|.-.+ ... |.+++.=+..|....- =.|+-|+++. |+ .++...+..+++.+.+||+.|.+
T Consensus 40 ~~~Lglt--~~PG~k~-~d~-~RdL~~DL~~Lk~~G~---~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~ 112 (168)
T PF05706_consen 40 SGFLGLT--FLPGCKF-KDW-RRDLQADLERLKDWGA---QDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS 112 (168)
T ss_dssp SSEEEEE--S-TT-EE-TTE-EB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred cceeeee--cCCCccc-ccc-cchHHHHHHHHHHCCC---CEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence 4455554 6777655 444 4444444555665443 3477788765 22 33444556688899999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHH
Q 000624 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTL 155 (1385)
Q Consensus 95 ~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al 155 (1385)
.| .++.+..++..+..+|.++. .|+|||++|.||+ |+|+||+|+..+...++++|+
T Consensus 113 aP--d~~~~~~i~~eL~~~L~~g~--~V~vHC~GGlGRt-GlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 113 AP--DFAAAWQILEELAARLENGR--KVLVHCRGGLGRT-GLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -----HHHHHHHHHHHHHHHHTT----EEEE-SSSSSHH-HHHHHHHHHHH-SSS-HHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHcCC--EEEEECCCCCCHH-HHHHHHHHHHHcCCCChhhcC
Confidence 98 89999999999999999855 5889999999995 999999999999988888875
No 16
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.94 E-value=9e-09 Score=106.08 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=91.2
Q ss_pred eeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCCC
Q 000624 17 LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP 96 (1385)
Q Consensus 17 tYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P 96 (1385)
+.|+++|++- ++|+..- ..+|..+.= -.|.||+++.+.. ...+.+..++|..|++..
T Consensus 2 ~~I~~~l~~G--~~~~~~~------------~~~l~~~gi---~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLG--SYSSALN------------LALLKKLGI---THVINVTNEVPNL------NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEEC--ChhHcCC------------HHHHHHcCC---CEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence 5789999887 6765421 345554322 5799999886531 234567888898885332
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhccCCCCCCC
Q 000624 97 LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPL 176 (1385)
Q Consensus 97 ~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~gv~~~~t~ 176 (1385)
...+.+..+++-|+.... .+.-|+|||++|.+|+ |++++|||++...+ +.++|++++..+++ .. ...
T Consensus 59 -~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS-~~v~~~yl~~~~~~-~~~~A~~~v~~~R~-~~-------~p~ 125 (138)
T smart00195 59 -KISPYFPEAVEFIEDAEK--KGGKVLVHCQAGVSRS-ATLIIAYLMKYRNL-SLNDAYDFVKDRRP-II-------SPN 125 (138)
T ss_pred -ChHHHHHHHHHHHHHHhc--CCCeEEEECCCCCchH-HHHHHHHHHHHhCC-CHHHHHHHHHHHCC-cc-------CCC
Confidence 133445555555555443 3456999999999995 99999999998777 68889999844331 11 146
Q ss_pred CcHHHHHHHHHH
Q 000624 177 PSQLRYLQYVSR 188 (1385)
Q Consensus 177 PSQ~RYv~Yf~~ 188 (1385)
..|++-|.-|++
T Consensus 126 ~~~~~qL~~~e~ 137 (138)
T smart00195 126 FGFLRQLIEYER 137 (138)
T ss_pred HhHHHHHHHHhh
Confidence 688888887764
No 17
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.81 E-value=1.8e-08 Score=108.97 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred cCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000624 81 YDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYK 160 (1385)
Q Consensus 81 ~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~ 160 (1385)
.+..+.++|+.|++.| .++.|.++...|++-++.+. .|||||.+|.||+ ||++||||++.+.+...++++.+..+
T Consensus 71 ~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~g~--kVvVHC~~GigRS-gtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 71 DGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSKGK--KVVVHCQGGIGRS-GTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred CCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhcCC--eEEEEcCCCCchH-HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4567888999999988 88999999999988888776 7999999999995 99999999999999999999997643
Q ss_pred hchhhhhccCCCCCCCCcHHHHHHHHHHh
Q 000624 161 QAPRELLQLMSPLNPLPSQLRYLQYVSRR 189 (1385)
Q Consensus 161 ~~~~~~~~gv~~~~t~PSQ~RYv~Yf~~l 189 (1385)
++ .+ .+ ...-|.+|...+...
T Consensus 146 ~r-~~---~v----~~~~q~~~~~e~~~~ 166 (180)
T COG2453 146 RR-PG---AV----VTEIQHLFELEQELF 166 (180)
T ss_pred cC-Cc---cc----ccHHHHHHHHHHHHH
Confidence 32 22 11 577788887776653
No 18
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.75 E-value=1.8e-08 Score=103.05 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=83.5
Q ss_pred HHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEec
Q 000624 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCE 127 (1385)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk 127 (1385)
..+|....= -.|.|++.+..... .....+...+.+|..|++.. +..+.+..+++-|+.+...+ ..|+|||.
T Consensus 11 ~~~l~~~~I---~~Vin~~~~~~~~~---~~~~~~~~~~~i~~~D~~~~-~~~~~~~~~~~~i~~~~~~~--~~VlVHC~ 81 (133)
T PF00782_consen 11 IAFLKNLGI---THVINLQEECPNPY---FYKPEGIEYLRIPIDDDPEE-PILEHLDQAVEFIENAISEG--GKVLVHCK 81 (133)
T ss_dssp HHHHHHTTE---EEEEECSSSSSTSH---HHTTTTSEEEEEEEESSTTS-HGGGGHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred HHHHHHCCC---CEEEEccCCCcCch---hcccCCCEEEEEEecCCCCc-chHHHHHHHHHhhhhhhccc--ceeEEEeC
Confidence 455555432 36899999864311 12234556677777663332 25677777888888776544 45999999
Q ss_pred CCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhccCCCCCCCCcHHHHHHHHHH
Q 000624 128 RGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR 188 (1385)
Q Consensus 128 ~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf~~ 188 (1385)
+|.+|+ |+++||||++.+.+ +.++|++++..+++ .. +..+.|+++|.-|++
T Consensus 82 ~G~~RS-~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~~-------~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 82 AGLSRS-GAVAAAYLMKKNGM-SLEEAIEYVRSRRP-QI-------NPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSSHH-HHHHHHHHHHHHTS-SHHHHHHHHHHHST-TS-------THHHHHHHHHHHHHH
T ss_pred CCcccc-hHHHHHHHHHHcCC-CHHHHHHHHHHHCC-CC-------CCCHHHHHHHHHhhc
Confidence 999995 99999999998877 88899999854432 21 134579999988774
No 19
>PRK12361 hypothetical protein; Provisional
Probab=98.71 E-value=1.2e-07 Score=119.82 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=101.9
Q ss_pred CceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCC
Q 000624 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1385)
Q Consensus 15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~ 94 (1385)
....|+++||+- +++...= ..+|++ ++- =.|.||++|... ........+....++|..|+.
T Consensus 94 ~~~~I~~~l~lG--~~~~a~d------------~~~L~~-~gI--~~Vldlt~E~~~--~~~~~~~~~i~yl~iPi~D~~ 154 (547)
T PRK12361 94 AIQKIDENLYLG--CRLFPAD------------LEKLKS-NKI--TAILDVTAEFDG--LDWSLTEEDIDYLNIPILDHS 154 (547)
T ss_pred cceEEcCcEEEC--CCCCccc------------HHHHHH-cCC--CEEEEccccccc--ccccccccCceEEEeecCCCC
Confidence 568899999998 6665321 345553 333 258899976321 000011223467778888877
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhccCCCCC
Q 000624 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLN 174 (1385)
Q Consensus 95 ~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~gv~~~~ 174 (1385)
.| .++.+.+.++.|+++++++.. |+|||++|.+|+ +++++|||++.+...+.++|++++.++|+ .. .
T Consensus 155 ~p--~~~~l~~a~~~i~~~~~~~~~--VlVHC~~G~sRS-a~vv~ayLm~~~~~~~~~eA~~~vr~~Rp-~v-------~ 221 (547)
T PRK12361 155 VP--TLAQLNQAINWIHRQVRANKS--VVVHCALGRGRS-VLVLAAYLLCKDPDLTVEEVLQQIKQIRK-TA-------R 221 (547)
T ss_pred CC--cHHHHHHHHHHHHHHHHCCCe--EEEECCCCCCcH-HHHHHHHHHHhccCCCHHHHHHHHHHHCC-CC-------C
Confidence 65 889999999999998876543 999999999995 99999999998877899999999854433 21 1
Q ss_pred CCCcHHHHHHHHHH
Q 000624 175 PLPSQLRYLQYVSR 188 (1385)
Q Consensus 175 t~PSQ~RYv~Yf~~ 188 (1385)
..+.|+|+++.|.+
T Consensus 222 ~n~~q~~~l~~~~~ 235 (547)
T PRK12361 222 LNKRQLRALEKMLE 235 (547)
T ss_pred CCHHHHHHHHHHHH
Confidence 46799999997765
No 20
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.70 E-value=1.5e-07 Score=96.70 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=82.1
Q ss_pred ceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCC
Q 000624 16 LLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1385)
Q Consensus 16 LtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~ 95 (1385)
++.|+++||+= ++++..- ..+|.+ ++- -.|.||+.+.+. .....-+..+.+|++.|...
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~-~gi--~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKK-LGI--THVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHH-cCC--CEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence 67899999987 6665422 344543 332 469999998764 11233456788888877663
Q ss_pred CCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 000624 96 PLLTM-ETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQ 161 (1385)
Q Consensus 96 P~p~L-~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~ 161 (1385)
. .+ ..+..+++-|+..+..+ .-|+|||.+|.||+ |+|+++||++.+.+ +.++|++++.++
T Consensus 61 ~--~~~~~~~~~~~~i~~~~~~~--~~vlVHC~~G~~Rs-~~~~~~~l~~~~~~-~~~~a~~~vr~~ 121 (139)
T cd00127 61 Q--DISKYFDEAVDFIDDAREKG--GKVLVHCLAGVSRS-ATLVIAYLMKTLGL-SLREAYEFVKSR 121 (139)
T ss_pred C--ChHHHHHHHHHHHHHHHhcC--CcEEEECCCCCchh-HHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3 33 44555666666655543 46999999999995 99999999987765 778899998543
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.50 E-value=6e-07 Score=87.15 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCcchhHHHHHHHHHhcCC-----CCHHHHHHHHHHhc
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF-----TGEQKTLDMIYKQA 162 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~-~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~-----~~~~~al~~~~~~~ 162 (1385)
.|.|++.|. ..+.+++|++.++.|..... ++-|+|||.+|.||+ |+++++||++.+.. ....+++..+..++
T Consensus 9 ~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00012 9 GWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 455777662 33889999999999998643 568899999999995 99999999988753 34556666663332
Q ss_pred hhhhhccCCCCCCCCcHHHHHHHH
Q 000624 163 PRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 163 ~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+ + .+ ..+.|.+|++..
T Consensus 87 ~-~---~~----~~~~q~~~~~~~ 102 (105)
T smart00012 87 P-G---MV----QTFEQYLFLYRA 102 (105)
T ss_pred h-h---hC----CcHHHHHHHHHH
Confidence 2 2 22 466677776643
No 22
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.50 E-value=6e-07 Score=87.15 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCcchhHHHHHHHHHhcCC-----CCHHHHHHHHHHhc
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF-----TGEQKTLDMIYKQA 162 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~-~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~-----~~~~~al~~~~~~~ 162 (1385)
.|.|++.|. ..+.+++|++.++.|..... ++-|+|||.+|.||+ |+++++||++.+.. ....+++..+..++
T Consensus 9 ~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00404 9 GWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRT-GTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChh-hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 455777662 33889999999999998643 568899999999995 99999999988753 34556666663332
Q ss_pred hhhhhccCCCCCCCCcHHHHHHHH
Q 000624 163 PRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 163 ~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+ + .+ ..+.|.+|++..
T Consensus 87 ~-~---~~----~~~~q~~~~~~~ 102 (105)
T smart00404 87 P-G---MV----QTFEQYLFLYRA 102 (105)
T ss_pred h-h---hC----CcHHHHHHHHHH
Confidence 2 2 22 466677776643
No 23
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.44 E-value=5.5e-07 Score=91.25 Aligned_cols=97 Identities=25% Similarity=0.447 Sum_probs=73.9
Q ss_pred ccccCceeecCCC-CCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHH
Q 000624 78 LSEYDMTVMDYPR-HYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLD 156 (1385)
Q Consensus 78 ~s~~~~~V~~~P~-~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~ 156 (1385)
...+++..+..|. ++-+.| +++.|..-++-|++..+.++ -+-||||||.+|+ +||++||||-.+.++. ++|++
T Consensus 71 wk~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asLGk--tvYVHCKAGRtRS-aTvV~cYLmq~~~wtp-e~A~~ 144 (183)
T KOG1719|consen 71 WKNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASLGK--TVYVHCKAGRTRS-ATVVACYLMQHKNWTP-EAAVE 144 (183)
T ss_pred HHhccceeEEeccccccCCC--CHHHHHHHHHHHHhccccCC--eEEEEecCCCccc-hhhhhhhhhhhcCCCH-HHHHH
Confidence 3445554444333 445776 99999999999999999988 5999999999996 9999999998887754 46999
Q ss_pred HHHHhchhhhhccCCCCCCCCcHHHHHHHHHH
Q 000624 157 MIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR 188 (1385)
Q Consensus 157 ~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf~~ 188 (1385)
++.+.+++-+ .-|+|.+-|.-|.+
T Consensus 145 ~vr~iRp~Vl--------L~~~Qw~~l~ef~~ 168 (183)
T KOG1719|consen 145 HVRKIRPRVL--------LRPAQWDVLKEFYK 168 (183)
T ss_pred HHHhcCccee--------ecHHHHHHHHHHHH
Confidence 8855443222 48999999885554
No 24
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.37 E-value=9.4e-06 Score=80.37 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=99.0
Q ss_pred cCCCCCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCC
Q 000624 10 RKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYP 89 (1385)
Q Consensus 10 ~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P 89 (1385)
|-.+..++|=.=|.++. --|+ .+....+|+++. +|+- -.|.-.|+-.|+.. .+.+-++.|+||+
T Consensus 6 rPAPveIsy~~MrFLIT--hnPt----naTln~fieELk-----Kygv--ttvVRVCe~TYdt~---~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLIT--HNPT----NATLNKFIEELK-----KYGV--TTVVRVCEPTYDTT---PLEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEe--cCCC----chhHHHHHHHHH-----hcCC--eEEEEecccccCCc---hhhhcCceEeecc
Confidence 55567778877788887 3454 344445555553 3543 57889999998754 3556788999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhhcc
Q 000624 90 RHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQL 169 (1385)
Q Consensus 90 ~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~~g 169 (1385)
|+|...| +-+.+-....-+..-+.+++.-.|+|||-+|-||. -+++|--||-+|+ .-++|++|+..++ |+-.
T Consensus 70 f~dg~pp--p~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra-pvlvalalie~gm--kyedave~ir~kr-rga~-- 141 (173)
T KOG2836|consen 70 FDDGAPP--PNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA-PVLVALALIEAGM--KYEDAVEMIRQKR-RGAI-- 141 (173)
T ss_pred cccCCCC--chHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc-hHHHHHHHHHccc--cHHHHHHHHHHHh-hccc--
Confidence 9986655 33333222222223344689999999999999995 8888888998886 5688999985443 3321
Q ss_pred CCCCCCCCcHHHHHHHH
Q 000624 170 MSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 170 v~~~~t~PSQ~RYv~Yf 186 (1385)
.--|+-||.-|
T Consensus 142 ------n~kql~~leky 152 (173)
T KOG2836|consen 142 ------NSKQLLYLEKY 152 (173)
T ss_pred ------cHHHHHHHHHh
Confidence 23477777654
No 25
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=97.93 E-value=3.1e-05 Score=87.01 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=66.9
Q ss_pred eecCC-CCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc----CCCCHHHHHHHHH
Q 000624 85 VMDYP-RHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTLDMIY 159 (1385)
Q Consensus 85 V~~~P-~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~----~~~~~~~al~~~~ 159 (1385)
.++|. |.|++.| ...+.++.|++.++.+......+-++|||.+|.||+ |++++++++... ..-+..+++..+.
T Consensus 132 ~~~~~~W~d~~~p-~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRs-g~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 132 HFQYTGWPDHGVP-ESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRT-GTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEeECCCCCCCcc-CChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCcc-chHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34443 6677776 244788999999999876555678999999999995 999999887655 3456677888774
Q ss_pred HhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 160 KQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 160 ~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
++++ + .+ ..+.|.+|++..
T Consensus 210 ~~R~-~---~v----~~~~Qy~f~~~~ 228 (231)
T cd00047 210 SQRP-G---MV----QTEEQYIFLYRA 228 (231)
T ss_pred hccc-c---cc----CCHHHHHHHHHH
Confidence 4332 2 22 688899998864
No 26
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=0.00047 Score=81.65 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 000624 135 AFMLAALLI 143 (1385)
Q Consensus 135 g~~ia~yLl 143 (1385)
-+++.+.||
T Consensus 13 ~~n~~S~lL 21 (569)
T KOG3671|consen 13 PPNVPSTLL 21 (569)
T ss_pred CCCCccccc
Confidence 344444443
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.81 E-value=8.6e-05 Score=89.53 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=63.8
Q ss_pred ceeecC-CCCCCCCCCCcHHHHHHHHHHHHHHHhcC-------CCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHH
Q 000624 83 MTVMDY-PRHYEGCPLLTMETVHHFLRSSESWLSLG-------HQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKT 154 (1385)
Q Consensus 83 ~~V~~~-P~~d~~~P~p~L~~l~~~c~~~~~WL~~d-------~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~a 154 (1385)
.++++| -|.|||.|. .-+.|..|.+.++.|-..+ .+...||||.||-||| ||+|||+++......+.+++
T Consensus 423 V~QFHyTnWPDHGVPp-ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRT-GTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 423 IPVLHVKNWPDHQPLP-STDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRT-GTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEEEEeCCCCCCCCCC-ChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchH-HHHHHHHHHhccccCCHHHH
Confidence 345555 568999863 4466888888888774322 1123589999999995 99999999876656678888
Q ss_pred HHHHHHhchhhhhccCCCCCCCCcHHHHHHHHH
Q 000624 155 LDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVS 187 (1385)
Q Consensus 155 l~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf~ 187 (1385)
+..+..++. ...| .+.-|.-.+.-+.
T Consensus 501 V~dlR~qRn---g~MV----Qt~eQy~~l~~~~ 526 (535)
T PRK15375 501 RADFRNSRN---NRML----EDASQFVQLKAMQ 526 (535)
T ss_pred HHHHHhcCC---cccc----ccHHHHHHHHHHH
Confidence 887743332 2233 4666655555443
No 28
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.76 E-value=0.005 Score=76.76 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhh
Q 000624 1152 INSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLT 1200 (1385)
Q Consensus 1152 v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~ 1200 (1385)
-.....+.+.-+..-+++-.+.+++|.--.|...|...- +||+|+...
T Consensus 553 AS~s~k~sr~lr~VleiILA~gNymns~kRg~ayGFklq-slD~ll~tk 600 (830)
T KOG1923|consen 553 ASKSLKESRKLRPVLEIILAFGNYMNSSKRGAAYGFKLQ-SLDSLLDTK 600 (830)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhccCCCcccccccceecc-ccHHHhhcc
Confidence 344455556666667777788999999988887765544 677766443
No 29
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=97.64 E-value=0.00013 Score=83.54 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=63.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc----CCCCHHHHHHHHHHhchh
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK----QFTGEQKTLDMIYKQAPR 164 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~----~~~~~~~al~~~~~~~~~ 164 (1385)
.|.|++.| ...+.+++|++.++.|.... .+-+||||.+|.||+ |+++|+++++.. ...+..+++..+.++++
T Consensus 165 ~W~d~~~P-~~~~~~~~~i~~v~~~~~~~-~~pivVHC~~G~gRs-g~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~- 240 (258)
T smart00194 165 NWPDHGVP-ESPKSILDLVRAVRKSQSTS-TGPIVVHCSAGVGRT-GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRP- 240 (258)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHhhccC-CCCEEEEeCCCCCcc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHhccc-
Confidence 45677776 35678899999999987642 456999999999995 999999887653 23456677777644332
Q ss_pred hhhccCCCCCCCCcHHHHHHHH
Q 000624 165 ELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 165 ~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+ .+ ..+-|.+|++..
T Consensus 241 ~---~v----~~~~Qy~f~~~~ 255 (258)
T smart00194 241 G---MV----QTEEQYIFLYRA 255 (258)
T ss_pred c---cc----CCHHHHHHHHHH
Confidence 1 22 688898888643
No 30
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=0.0016 Score=77.28 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.7
Q ss_pred hhhhhh
Q 000624 1042 QLIELR 1047 (1385)
Q Consensus 1042 ~lLD~K 1047 (1385)
.+||.+
T Consensus 539 ~~m~ar 544 (569)
T KOG3671|consen 539 NLMDAR 544 (569)
T ss_pred HHHHHH
Confidence 344543
No 31
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.00033 Score=89.56 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc-CCCCHHHHHHHHHHhchhhhh
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK-QFTGEQKTLDMIYKQAPRELL 167 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~-~~~~~~~al~~~~~~~~~~~~ 167 (1385)
-|.||||| -....++.|+..|.+- ..+.+-=|||||.||.||+ ||+|++=++.+- ...-.-+.++++.. +| .=-
T Consensus 1035 aWPDHg~P-~D~~~FL~Fleevrsv-R~~t~pPilvHCSAGiGRT-GVlIl~e~~l~lle~Ne~vdi~divr~-mR-~QR 1109 (1144)
T KOG0792|consen 1035 AWPDHGVP-DDPNDFLDFLEEVRSV-RRGTNPPILVHCSAGIGRT-GVLILMETALCLLEHNEPVDILDIVRT-MR-DQR 1109 (1144)
T ss_pred ccccCCCC-CChHHHHHHHHHHHHH-hccCCCCeEEEccCCCCcc-eehHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHH
Confidence 34699998 4778888999888763 3343336999999999995 998887544433 33333345555521 11 100
Q ss_pred ccCCCCCCCCcHHHHHHHH
Q 000624 168 QLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 168 ~gv~~~~t~PSQ~RYv~Yf 186 (1385)
. .++.+++|-+||+-.
T Consensus 1110 ~---~mVQT~~QYkFVyev 1125 (1144)
T KOG0792|consen 1110 A---MMVQTLSQYKFVYEV 1125 (1144)
T ss_pred h---hhccchHHhhHHHHH
Confidence 1 123799999998743
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.35 E-value=0.00029 Score=78.73 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=65.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCC----CCHHHHHHHHHHhchh
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQF----TGEQKTLDMIYKQAPR 164 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~----~~~~~al~~~~~~~~~ 164 (1385)
.|.+++.| ...+.++.|++.+..|. .+..+-++|||.+|.||+ |+++++.+++..+. -+..+++..+.+++.
T Consensus 142 ~W~~~~~P-~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRs-g~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~- 217 (235)
T PF00102_consen 142 NWPDDGVP-PSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRS-GTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRP- 217 (235)
T ss_dssp SSSSSSSG-SSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHH-HHHHHHHHHHHHHHHHSEECHHHHHHHHHTTST-
T ss_pred eccccccc-cccchhhhhhhhccccc-cCCccceEeecccccccc-cccccchhhccccccccchhhHHHHHHHHhhCC-
Confidence 56677776 46888999999999999 777889999999999995 99999998877653 355566666533321
Q ss_pred hhhccCCCCCCCCcHHHHHHHH
Q 000624 165 ELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 165 ~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
..+ ....|.+|+++.
T Consensus 218 ---~~i----~~~~qy~f~~~~ 232 (235)
T PF00102_consen 218 ---GAI----QSPEQYRFCYMA 232 (235)
T ss_dssp ---TSS----SSHHHHHHHHHH
T ss_pred ---Ccc----CCHHHHHHHHHH
Confidence 222 677787777764
No 33
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.20 E-value=0.00078 Score=71.87 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCC
Q 000624 13 PDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHY 92 (1385)
Q Consensus 13 ~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d 92 (1385)
++....|.+.||=- ++|.. .=..||++.+=. -|.||+.+.+..+....+.+.+.+..+++...
T Consensus 4 P~nF~~V~~~vYRS--~~P~~------------~n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~ 66 (164)
T PF03162_consen 4 PLNFGMVEPGVYRS--AQPTP------------ANFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSS 66 (164)
T ss_dssp -TT-EEEETTEEEE--SS--H------------HHHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-----
T ss_pred CccccCCCCCccCC--CCCCh------------hhHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEecccc
Confidence 44555666666654 55542 235688884432 58899998754443333445677888876544
Q ss_pred CCCC--CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHH
Q 000624 93 EGCP--LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1385)
Q Consensus 93 ~~~P--~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~ 158 (1385)
...+ ..+-+.+.++++.| |+. .+.=|+|||+.|+.| ||+|++||=.+.|. + ...+++-|
T Consensus 67 ~~~~~~~~~~~~v~~aL~~i---ld~-~n~PvLiHC~~G~~r-TG~vvg~lRk~Q~W-~-~~~i~~Ey 127 (164)
T PF03162_consen 67 SKDPWVPISEEQVAEALEII---LDP-RNYPVLIHCNHGKDR-TGLVVGCLRKLQGW-S-LSSIFDEY 127 (164)
T ss_dssp --GGG----HHHHHHHHHHH---H-G-GG-SEEEE-SSSSSH-HHHHHHHHHHHTTB---HHHHHHHH
T ss_pred ccCccccCCHHHHHHHHHHH---hCC-CCCCEEEEeCCCCcc-hhhHHHHHHHHcCC-C-HHHHHHHH
Confidence 3321 12445555555443 222 233489999999999 59999999765543 3 33466655
No 34
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=97.05 E-value=0.04 Score=68.00 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=78.9
Q ss_pred cccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1233 LVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFC----KLLKEFLSYAEGEVRSLALLYSSVGRNAD 1308 (1385)
Q Consensus 1233 L~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~----~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1308 (1385)
+..+..++..+++.|...+.++.+.+.++...+.....+.. .+.|+ ..+..|...+++.++.+++.-++.....+
T Consensus 315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~-~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~ 393 (432)
T smart00498 315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTS-PEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVK 393 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44447788899999999999999999999988876655422 24444 45556666666666667777777888888
Q ss_pred HHHHHhCCCCC--CCChHHHHHHHHHHHHHHHHHHHH
Q 000624 1309 ALAQYFGEDPA--RCPFEQVVSTLLNFVKMFVLAHEE 1343 (1385)
Q Consensus 1309 ~l~~yFGEdp~--~~~~eeff~~l~~Fi~~fkka~ee 1343 (1385)
++.+||..+.. ......+|.+..+|...+.+..++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~ 430 (432)
T smart00498 394 ETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEE 430 (432)
T ss_pred HHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHh
Confidence 99999997542 223445677778888887776654
No 35
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=96.79 E-value=0.0011 Score=69.56 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=37.1
Q ss_pred ccCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHH
Q 000624 80 EYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLI 143 (1385)
Q Consensus 80 ~~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLl 143 (1385)
.++......|..||.+| .-+.+-.|+.-+.++ ..+-.+++||++|+||||.+|+.+.|+
T Consensus 90 ~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46667778899999998 555555555544443 336679999999999997777777665
No 36
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.66 E-value=0.0037 Score=74.19 Aligned_cols=130 Identities=12% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEE---EecccCCccccccccccccCceeecCCCCCCCCCCCcHHHHHH
Q 000624 29 CFTTDILEEEEYKEYLGGIVGQLREYFPEASFMV---FNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHH 105 (1385)
Q Consensus 29 ~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V---~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P~p~L~~l~~ 105 (1385)
+|..... .+.+|=.-.+|..+|.++ +|+| .-|..-..++. ...+.+.+..-..--..+|+. .|..+....
T Consensus 36 ~~~~k~~-~~~~~f~~~dl~~~l~~~----~~~vgl~iDltnt~ryy~-~~~~~~~g~~Y~K~~c~g~~~-vp~~~~v~~ 108 (393)
T KOG2386|consen 36 SYSTKTF-PGSQRFQPKDLFELLKEH----NYKVGLKIDLTNTLRYYD-KPELEERGVKYLKRNCPGRGV-VPRTELVDK 108 (393)
T ss_pred CCCcCCC-CCccccCHHHHHHHHHhc----CceEEEEEeccceeeeec-cccccccceeEEEeccCCccc-CCCccchHH
Confidence 5555555 444487888888888864 3443 33322211110 000111111111112233443 459999999
Q ss_pred HHHHHHHHHh--cCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHhchhhhh
Q 000624 106 FLRSSESWLS--LGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELL 167 (1385)
Q Consensus 106 ~c~~~~~WL~--~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~~~~~~~ 167 (1385)
|.+.++.+.. +++.-+|.|||-.|+-| ||+|||+||+-.+. -+..+|+.+|..-+..++.
T Consensus 109 fv~~v~~f~~~~~~~~~LI~vhcthG~Nr-tgyLI~~yL~~~~~-~s~~~aik~f~~~r~~gi~ 170 (393)
T KOG2386|consen 109 FVKLVKGFVDDTKLDDELIGVHCTHGLNR-TGYLICAYLADVGG-YSSSEAIKRFADARPPGIE 170 (393)
T ss_pred HHHHHHHHHhcccCCCCEEEEeCCCcccc-cceeeeeeeeeccC-ccHHHHHHHHHHhCCCccC
Confidence 9999999999 78999999999999998 59999999998888 5666799999765544443
No 37
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=96.61 E-value=0.0075 Score=71.11 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=55.6
Q ss_pred eeecC---CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC---------cEEEEEecCCCCcchhHHHHHHHHHhcC----
Q 000624 84 TVMDY---PRHYEGCPLLTMETVHHFLRSSESWLSLGHQ---------NVLLMHCERGGWPVLAFMLAALLIYRKQ---- 147 (1385)
Q Consensus 84 ~V~~~---P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~---------NVvvvHCk~Gkgr~tg~~ia~yLly~~~---- 147 (1385)
.|.+| -|.|+|.|. ....++.|++.++.|-+.-.+ .=+||||.+|-||+ |+.||.-++...+
T Consensus 183 ~V~h~~y~~Wpd~~~P~-~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRt-Gtfcaidi~i~~l~~~~ 260 (312)
T PHA02747 183 KISHFQCSEWFEDETPS-DHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKT-GIFCAVDICLNQLVKRK 260 (312)
T ss_pred EEEEEEECCCCCCCCCC-ChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcch-hHHHHHHHHHHHHHhcC
Confidence 35554 667788773 455677888777766432111 24999999999995 9887776544332
Q ss_pred CCCHHHHHHHHHHhchhhhhccCCCCCCCCcHHHHH
Q 000624 148 FTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYL 183 (1385)
Q Consensus 148 ~~~~~~al~~~~~~~~~~~~~gv~~~~t~PSQ~RYv 183 (1385)
.-+..+++..+.++|+ ..| .+.-|-.|+
T Consensus 261 ~v~v~~~V~~lR~qR~----~~V----qt~~QY~F~ 288 (312)
T PHA02747 261 AICLAKTAEKIREQRH----AGI----MNFDDYLFI 288 (312)
T ss_pred CCCHHHHHHHHHhccc----ccc----CCHHHHHHH
Confidence 2233455555533322 223 578898888
No 38
>PLN02727 NAD kinase
Probab=96.38 E-value=0.0044 Score=79.69 Aligned_cols=80 Identities=16% Similarity=0.342 Sum_probs=57.7
Q ss_pred EEEecccCCccccc-----cccccccCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchh
Q 000624 61 MVFNFREGEHQSQI-----GQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLA 135 (1385)
Q Consensus 61 ~V~NLs~~~~~~~~-----~~~~s~~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg 135 (1385)
-|.||+++....+. .......+.+.+++|....+.| +.+.+.+|.+.+++ .-..=|+|||+.|.+| +|
T Consensus 284 TIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap--t~EqVe~fa~~l~~----slpkPVLvHCKSGarR-AG 356 (986)
T PLN02727 284 TIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP--SAEQVEKFASLVSD----SSKKPIYLHSKEGVWR-TS 356 (986)
T ss_pred EEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC--CHHHHHHHHHHHHh----hcCCCEEEECCCCCch-HH
Confidence 49999887642221 1122236788999998776665 88999888877744 1233499999999988 59
Q ss_pred HHHHHHHHHhcC
Q 000624 136 FMLAALLIYRKQ 147 (1385)
Q Consensus 136 ~~ia~yLly~~~ 147 (1385)
+|+||||.|.-.
T Consensus 357 amvA~yl~~~~~ 368 (986)
T PLN02727 357 AMVSRWKQYMTR 368 (986)
T ss_pred HHHHHHHHHHcc
Confidence 999999998654
No 39
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.34 E-value=0.021 Score=59.11 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=68.8
Q ss_pred CceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccc------cccccCceeecC
Q 000624 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQ------VLSEYDMTVMDY 88 (1385)
Q Consensus 15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~------~~s~~~~~V~~~ 88 (1385)
|+.-|++++++. +=+++ +|+ ..|.+. += -.|+||+...-...-.+ .....+..+.++
T Consensus 1 ~~~~i~~~~~~s--~qlt~-----------~d~-~~L~~~-Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i 63 (135)
T TIGR01244 1 DIRKLTEHLYVS--PQLTK-----------ADA-AQAAQL-GF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ 63 (135)
T ss_pred CceEcCCCeeEc--CCCCH-----------HHH-HHHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 456788888887 43332 233 345443 22 46999986431111000 112246677787
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHH
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~ 158 (1385)
|....+. +-+.+-.|.+-+++ . ..=|++||+.|+ |+ |++.+-++.+.| -+.+++++..
T Consensus 64 Pv~~~~~---~~~~v~~f~~~~~~---~--~~pvL~HC~sG~-Rt-~~l~al~~~~~g--~~~~~i~~~~ 121 (135)
T TIGR01244 64 PVTAGDI---TPDDVETFRAAIGA---A--EGPVLAYCRSGT-RS-SLLWGFRQAAEG--VPVEEIVRRA 121 (135)
T ss_pred ecCCCCC---CHHHHHHHHHHHHh---C--CCCEEEEcCCCh-HH-HHHHHHHHHHcC--CCHHHHHHHH
Confidence 7654432 56677777766652 2 244999999999 84 888777776655 3677788764
No 40
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.30 E-value=0.0043 Score=72.76 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=69.9
Q ss_pred hcCCCceEEEecccCCccccccccccccCc----------eeec---CCCCCCCCCCCcHHHHHHHHHHHHHH----Hhc
Q 000624 54 YFPEASFMVFNFREGEHQSQIGQVLSEYDM----------TVMD---YPRHYEGCPLLTMETVHHFLRSSESW----LSL 116 (1385)
Q Consensus 54 ~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~----------~V~~---~P~~d~~~P~p~L~~l~~~c~~~~~W----L~~ 116 (1385)
.|++ +.|-|..+....+ ..+.+|.+ .|.+ .-|.|||+|.-| .-++.|+.+++.- +.+
T Consensus 378 ~~G~--~~v~~v~E~~t~d---Y~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dP-g~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 378 EYGV--MRVRNVKESDTHD---YTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDP-GGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred hcCc--eEEEecccccccc---ceehheeeccccCCcchhhhhhhheeecccCCCcCCc-cHHHHHHHHhhhhhcccccc
Confidence 4654 8999988865210 11222211 1222 256799999644 4566888888653 222
Q ss_pred CCCcEEEEEecCCCCcchhHHHHHHHHHhc----C--C-CCHHHHHHHHHHhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK----Q--F-TGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 117 d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~----~--~-~~~~~al~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+ -|||||.||-||| ||+|-.=+|.-. . | ....+++.|+..++ ++++.+--|-|||+|-
T Consensus 452 g---pIvVHCSAGIGrT-GTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqR--------SGmVQTEaQYkFiY~A 516 (600)
T KOG0790|consen 452 G---PIVVHCSAGIGRT-GTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQR--------SGMVQTEAQYKFIYVA 516 (600)
T ss_pred C---cEEEEccCCcCCc-ceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHh--------cchhhhHHhHHHHHHH
Confidence 3 5999999999995 875443333221 1 2 35678888884332 2344688899999874
No 41
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=96.27 E-value=0.014 Score=68.70 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcC----------CCcEEEEEecCCCCcchhHHHHHHHHHhcCC----CCHHHH
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLG----------HQNVLLMHCERGGWPVLAFMLAALLIYRKQF----TGEQKT 154 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d----------~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~----~~~~~a 154 (1385)
-|.|||.| ..-..++.|++.+..|-... ...=+||||.+|.||+ |+.||...+....- -+..++
T Consensus 190 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-GtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 190 DWPHGGLP-RDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRA-GAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchh-HHHHHHHHHHHHHHhcCCCCHHHH
Confidence 56788887 35677889999888764221 1234999999999995 98887766554331 123345
Q ss_pred HHHHHHhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 155 LDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 155 l~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+..+.++|+ ..| .+.-|-.|++..
T Consensus 268 V~~lR~qR~----~~V----qt~~QY~F~y~~ 291 (303)
T PHA02742 268 VRDLRKQRH----NCL----SLPQQYIFCYFI 291 (303)
T ss_pred HHHHHhhcc----ccc----CCHHHHHHHHHH
Confidence 554433322 222 577888877653
No 42
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=96.25 E-value=0.0067 Score=71.87 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=54.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhc-------CC--CcEEEEEecCCCCcchhHHHHHHHHHhcC----CCCHHHHH
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSL-------GH--QNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQKTL 155 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~-------d~--~NVvvvHCk~Gkgr~tg~~ia~yLly~~~----~~~~~~al 155 (1385)
-|.|||.| .....++.|++.|..|-.. ++ ..=+||||.+|.||+ |+.||.-.+...+ .-+..+++
T Consensus 209 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRT-Gtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 209 DWPDNGIP-TGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRA-GTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcc-hhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56688876 3567788899888887432 11 245999999999995 9887765543322 22333444
Q ss_pred HHHHHhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 156 DMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 156 ~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
..+.++| ...| .+.-|-.|++..
T Consensus 287 ~~lR~qR----~~~V----qt~~QY~F~y~~ 309 (323)
T PHA02746 287 LKIRKQR----HSSV----FLPEQYAFCYKA 309 (323)
T ss_pred HHHHhcc----cccC----CCHHHHHHHHHH
Confidence 4442222 1223 577888887744
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.20 E-value=0.0084 Score=70.16 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=55.6
Q ss_pred eeecC---CCCCCCCCCCcHHHHHHHHHHHHHHHh-------cCCCcEEEEEecCCCCcchhHHHHHHHHHhcCC----C
Q 000624 84 TVMDY---PRHYEGCPLLTMETVHHFLRSSESWLS-------LGHQNVLLMHCERGGWPVLAFMLAALLIYRKQF----T 149 (1385)
Q Consensus 84 ~V~~~---P~~d~~~P~p~L~~l~~~c~~~~~WL~-------~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~----~ 149 (1385)
.|.+| -|.|||.|. .-..++.|++.+.++.. .+...=+||||.+|-||+ |+.||.-.+...+. -
T Consensus 177 ~V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRT-GtFcaiDi~l~~~~~~~~v 254 (298)
T PHA02740 177 KISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSS-AVFCVFDICATEFDKTGML 254 (298)
T ss_pred EEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchh-HHHHHHHHHHHHHHhcCcc
Confidence 35553 566888873 55667788877765532 122235899999999995 98877665543321 1
Q ss_pred CHHHHHHHHHHhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 150 GEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 150 ~~~~al~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
+.-+++..+.+++ ...| .+..|-.|++..
T Consensus 255 di~~~V~~lR~qR----~~~V----qt~~QY~F~y~~ 283 (298)
T PHA02740 255 SIANALKKVRQKK----YGCM----NCLDDYVFCYHL 283 (298)
T ss_pred cHHHHHHHHHhhC----cccc----CCHHHHHHHHHH
Confidence 2233444332222 2223 678898887753
No 44
>PHA02738 hypothetical protein; Provisional
Probab=96.00 E-value=0.01 Score=70.27 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=56.6
Q ss_pred eeecC---CCCCCCCCCCcHHHHHHHHHHHHHHHhc--------CC----CcEEEEEecCCCCcchhHHHHHHHHHhcC-
Q 000624 84 TVMDY---PRHYEGCPLLTMETVHHFLRSSESWLSL--------GH----QNVLLMHCERGGWPVLAFMLAALLIYRKQ- 147 (1385)
Q Consensus 84 ~V~~~---P~~d~~~P~p~L~~l~~~c~~~~~WL~~--------d~----~NVvvvHCk~Gkgr~tg~~ia~yLly~~~- 147 (1385)
.|.+| -|.|+|.|. .-..+++|++.|..|-.. +. ..=+||||.+|.||+ |+.||.-.+...+
T Consensus 178 ~V~h~~y~~Wpd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRt-GtFcaidi~i~~~~ 255 (320)
T PHA02738 178 TVTHFNFTAWPDHDVPK-NTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRT-PCYCVVDISISRFD 255 (320)
T ss_pred EEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChh-hhhhHHHHHHHHHH
Confidence 35553 567788763 456678888888876321 11 135999999999995 8876666554432
Q ss_pred ---CCCHHHHHHHHHHhchhhhhccCCCCCCCCcHHHHHHHH
Q 000624 148 ---FTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186 (1385)
Q Consensus 148 ---~~~~~~al~~~~~~~~~~~~~gv~~~~t~PSQ~RYv~Yf 186 (1385)
.-+..+++..+.+++ ...| .++.|-.|++..
T Consensus 256 ~~~~vdv~~~V~~lR~qR----~~~v----qt~~QY~F~y~~ 289 (320)
T PHA02738 256 ACATVSIPSIVSSIRNQR----YYSL----FIPFQYFFCYRA 289 (320)
T ss_pred hcCCcCHHHHHHHHHhhh----hhcc----CCHHHHHHHHHH
Confidence 223334454443332 2233 688898887654
No 45
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=95.97 E-value=0.93 Score=60.86 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhHH-HHHHHHhhccCCC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--
Q 000624 1244 LKFLAEEMQAISKGLE-KVVQELTASENDG--EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP-- 1318 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~-kl~~el~~se~d~--~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp-- 1318 (1385)
...|...+..+.+.+. ..+.+. ....+. .....|...+..=+.....+..++.+....+.+.|..-.. .+..
T Consensus 690 ~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~--~~~~~~ 766 (833)
T KOG1922|consen 690 CSDLKKGLEKVKRELPTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPK--EEITPE 766 (833)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--ccCCHH
Confidence 3445566666666664 333221 111121 1234566666666666666666777777777777766654 3322
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000624 1319 -ARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKT 1366 (1385)
Q Consensus 1319 -~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~ 1366 (1385)
......+|+.++...+++.+++.++.... +.+.+++..+++.+..+.
T Consensus 767 ~~f~~~r~fl~~~~~~~~e~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~ 814 (833)
T KOG1922|consen 767 QVFSILRDFLRTFDKAHEENKKAEEKEKTY-EAEEKRANKEAELEELKN 814 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccccccccccc
Confidence 12345778888888888888887665433 555566555555554443
No 46
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.95 E-value=0.017 Score=67.23 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=64.5
Q ss_pred eeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHH-HHHhcCCCCHHHHHHHHHHhc
Q 000624 84 TVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAAL-LIYRKQFTGEQKTLDMIYKQA 162 (1385)
Q Consensus 84 ~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~y-Lly~~~~~~~~~al~~~~~~~ 162 (1385)
.+..+-|.|||.| -+.+.|+.|.+....|+... .-.++|||.+|-||| ||.||-- |++.-......+....+...+
T Consensus 254 ~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRT-GTFiald~LLqq~~~~~~vdi~~iv~~lR 330 (374)
T KOG0791|consen 254 HFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRT-GTFIALDRLLQQIDSEETVDIFGVVLELR 330 (374)
T ss_pred EEEEeeccccCCC-CCchhHHHHHHHHHhhcccC-CCceeEEeecccccc-cchHhHHHHHHHhcccccccHHHHHHHhh
Confidence 4455678899998 57788899999999999988 568999999999995 8887765 454444443444555554332
Q ss_pred hhhhhccCCCCCCCCcHHHHHHHHH
Q 000624 163 PRELLQLMSPLNPLPSQLRYLQYVS 187 (1385)
Q Consensus 163 ~~~~~~gv~~~~t~PSQ~RYv~Yf~ 187 (1385)
. ...+.| ++=-|.=||++.-
T Consensus 331 ~-~R~~mV----qte~Qyvfl~~c~ 350 (374)
T KOG0791|consen 331 S-ARMLMV----QTEDQYVFLHQCV 350 (374)
T ss_pred h-cccccc----chHHHHHHHHHHH
Confidence 1 222333 4445555555543
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.90 E-value=0.16 Score=65.86 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcccccCCCC
Q 000624 1164 KLKRIMQTILSLGNALNHGTA 1184 (1385)
Q Consensus 1164 ~L~~lL~~IL~lGN~LN~Gt~ 1184 (1385)
..+++-.+|-.|+|||+..++
T Consensus 1469 s~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 355666778899999998754
No 48
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.77 E-value=0.1 Score=60.93 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=32.6
Q ss_pred CcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 000624 119 QNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQ 161 (1385)
Q Consensus 119 ~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~~~~ 161 (1385)
.-.|+|||.+|.+|+ ++++.|||++...+. -++|++++-.+
T Consensus 155 ~~~vlVHC~~GvSRS-at~viAYlM~~~~~~-l~~A~~~vk~~ 195 (285)
T KOG1716|consen 155 GGKVLVHCQAGVSRS-ATLVIAYLMKYEGLS-LEDAYELVKSR 195 (285)
T ss_pred CCeEEEEcCCccchh-HHHHHHHHHHHcCCC-HHHHHHHHHHh
Confidence 557999999999996 888889988877654 45699988433
No 49
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.67 E-value=0.034 Score=61.80 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred hcCCCceEEEecccCCccccccccccccCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCC
Q 000624 54 YFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSL--GHQNVLLMHCERGGW 131 (1385)
Q Consensus 54 ~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~--d~~NVvvvHCk~Gkg 131 (1385)
+|+- -.|.|.+..--. .|.+ .-+.+...+|..||..- .| -.|.-+..+|+.. ..+--|+|||.+|-.
T Consensus 195 k~gI--~yviNVTpnlpn-~fe~---~g~f~YkqipisDh~Sq--nl---s~ffpEAIsfIdeArsk~cgvLVHClaGIS 263 (343)
T KOG1717|consen 195 KYGI--KYVINVTPNLPN-NFEN---NGEFIYKQIPISDHASQ--NL---SQFFPEAISFIDEARSKNCGVLVHCLAGIS 263 (343)
T ss_pred hcCc--eEEEecCCCCcc-hhhc---CCceeEEeeeccchhhh--hh---hhhhHHHHHHHHHhhccCCcEEEeeecccc
Confidence 5555 358898875321 1111 01223556788887554 33 3444444455543 455569999999999
Q ss_pred cchhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000624 132 PVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1385)
Q Consensus 132 r~tg~~ia~yLly~~~~~~~~~al~~~~ 159 (1385)
|+ .|++.+|||-. ..-+-.+|.+++-
T Consensus 264 RS-vTvtvaYLMqk-l~lslndAyd~Vk 289 (343)
T KOG1717|consen 264 RS-VTVTVAYLMQK-LNLSLNDAYDFVK 289 (343)
T ss_pred ch-hHHHHHHHHHH-hccchhhHHHHHH
Confidence 95 99999999854 4456678999884
No 50
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.22 E-value=0.025 Score=63.20 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 103 VHHFLRSSESWLSLG-HQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 103 l~~~c~~~~~WL~~d-~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
|..+|+-+++..... ..+.++|||-||-||| ||.|+--.|.+-
T Consensus 201 i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRT-GTFIalD~ll~~ 244 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRT-GTFIALDILLRM 244 (302)
T ss_pred HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCc-ceeeeHHHHHhc
Confidence 344455555555443 5688999999999995 998887655443
No 51
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.97 E-value=0.029 Score=59.91 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcC
Q 000624 109 SSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1385)
Q Consensus 109 ~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~ 147 (1385)
.+-.+|...+ +-+++||.+||-| ||+++|-+|.-.|.
T Consensus 115 ~~~~~l~~~~-~p~l~HC~aGKDR-TG~~~alll~~lGV 151 (164)
T PF13350_consen 115 KIFELLADAP-GPVLFHCTAGKDR-TGVVAALLLSLLGV 151 (164)
T ss_dssp HHHHHHH-TT---EEEE-SSSSSH-HHHHHHHHHHHTT-
T ss_pred HHHHHhccCC-CcEEEECCCCCcc-HHHHHHHHHHHcCC
Confidence 3334455555 7999999999999 59998888876664
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.96 E-value=5.5 Score=52.58 Aligned_cols=29 Identities=28% Similarity=0.157 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNAD 1308 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1308 (1385)
...+.-..+|+..++.|.+.|+.+++...
T Consensus 1650 ~sa~~~A~~a~q~~~~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1650 GSAKEQALSAEQGLEILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666655443
No 53
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=94.67 E-value=0.45 Score=50.56 Aligned_cols=64 Identities=27% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRS----LALLYSSVGRNADALAQYFGE--DPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1354 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~----L~~~~~~~~~~~~~l~~yFGE--dp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk 1354 (1385)
+|-.++...++.+.+ ..+...+.++...++.+|||. |+.+.- .++..++.|.|.||
T Consensus 143 K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~R------------------F~emLqqkEkeekK 204 (225)
T KOG4848|consen 143 KYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPR------------------FEEMLQQKEKEEKK 204 (225)
T ss_pred HhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHH------------------HHHHHHHHHHHHHH
Confidence 344444444444433 233444566778889999997 544322 23444555666666
Q ss_pred HHHHHHHH
Q 000624 1355 AEKAVENE 1362 (1385)
Q Consensus 1355 ~~keae~e 1362 (1385)
+.|++++.
T Consensus 205 ~~KeaKrk 212 (225)
T KOG4848|consen 205 AVKEAKRK 212 (225)
T ss_pred HHHHHHHH
Confidence 66654443
No 54
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=93.50 E-value=0.53 Score=52.33 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCC--CCCcHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 000624 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC--PLLTMETVHHFLRSSESWLSLGHQNVLLMH 125 (1385)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~--P~p~L~~l~~~c~~~~~WL~~d~~NVvvvH 125 (1385)
..||++-|- +-|.-||.|.|-.....-+...+.+..++...-... -.|.-.+..+.++..-+.|-.-.+.=++||
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lih 154 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIH 154 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEe
Confidence 677887664 446668888653222222333455555554332220 012333344444444444444445569999
Q ss_pred ecCCCCcchhHHHHHHHHHhcCC
Q 000624 126 CERGGWPVLAFMLAALLIYRKQF 148 (1385)
Q Consensus 126 Ck~Gkgr~tg~~ia~yLly~~~~ 148 (1385)
|++||-|+ |++|+|+=-..+++
T Consensus 155 c~rGkhRt-g~lVgclRklq~W~ 176 (249)
T KOG1572|consen 155 CKRGKHRT-GCLVGCLRKLQNWS 176 (249)
T ss_pred cCCCCcch-hhhHHHHHHHhccc
Confidence 99999995 99999997666644
No 55
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=92.37 E-value=0.27 Score=49.11 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=48.7
Q ss_pred CceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCce-EEEecccCCcc------ccccccccccCceeec
Q 000624 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASF-MVFNFREGEHQ------SQIGQVLSEYDMTVMD 87 (1385)
Q Consensus 15 DLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y-~V~NLs~~~~~------~~~~~~~s~~~~~V~~ 87 (1385)
|+..|++++.+. +-++. +++.. |.. . | | .|.|++...-. ..+.......++..++
T Consensus 1 di~~i~~~~~vs--~Q~~~-----------~d~~~-la~-~-G--fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~ 62 (110)
T PF04273_consen 1 DIRQISDDLSVS--GQPSP-----------EDLAQ-LAA-Q-G--FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVH 62 (110)
T ss_dssp --EEEETTEEEE--CS--H-----------HHHHH-HHH-C-T----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE
T ss_pred CCEecCCCeEEC--CCCCH-----------HHHHH-HHH-C-C--CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 788999999998 55542 33332 322 1 2 3 48899754211 1222344568889999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcc
Q 000624 88 YPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPV 133 (1385)
Q Consensus 88 ~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~ 133 (1385)
.|+...+ ++.+.+..|.+.+++ + ++ =|++||+.|. |.
T Consensus 63 iPv~~~~---~~~~~v~~f~~~l~~-~---~~-Pvl~hC~sG~-Ra 99 (110)
T PF04273_consen 63 IPVDGGA---ITEEDVEAFADALES-L---PK-PVLAHCRSGT-RA 99 (110)
T ss_dssp ----TTT-----HHHHHHHHHHHHT-T---TT-SEEEE-SCSH-HH
T ss_pred eecCCCC---CCHHHHHHHHHHHHh-C---CC-CEEEECCCCh-hH
Confidence 9987654 378889888877765 2 22 2899998887 64
No 56
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.34 E-value=1.3 Score=46.84 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=69.2
Q ss_pred cccccCCCCCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCcee
Q 000624 6 KFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTV 85 (1385)
Q Consensus 6 r~~~~~~~lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V 85 (1385)
+++....=-+|+.||+-+|.-. | . ..+.+.|-++++- -+|.|-+-|.-+..+. +.+.
T Consensus 7 ~~~~~~~~~~~SqIt~sLfl~~-G-----v---------aA~~k~~l~~~~I--t~IiNat~E~pn~~l~------~~qy 63 (198)
T KOG1718|consen 7 TLEVQPSIGGMSQITPSLFLSN-G-----V---------AANDKLLLKKRKI--TCIINATTEVPNTSLP------DIQY 63 (198)
T ss_pred ccccCCCccchhhcCcceeEec-c-----c---------cccCHHHHHhcCc--eEEEEcccCCCCccCC------Ccee
Confidence 3344444457999999888751 2 2 2234455566765 6899999886432111 2223
Q ss_pred ecCCCCCCCCCCCcHHHHHHHH-HHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHHHHHHHH
Q 000624 86 MDYPRHYEGCPLLTMETVHHFL-RSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1385)
Q Consensus 86 ~~~P~~d~~~P~p~L~~l~~~c-~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~~al~~~ 158 (1385)
+..+..|+-.- .|..-++.. ..|++--..+. -.+|||.||-.|+ |.++-+||+-.. +-+-.||..++
T Consensus 64 ~kv~~~D~p~~--~l~~hfD~vAD~I~~v~~~gG--~TLvHC~AGVSRS-AsLClAYLmK~~-~msLreAy~~v 131 (198)
T KOG1718|consen 64 MKVPLEDTPQA--RLYDHFDPVADKIHSVIMRGG--KTLVHCVAGVSRS-ASLCLAYLMKYH-CMSLREAYHWV 131 (198)
T ss_pred EEEEcccCCcc--hhhhhhhHHHHHHHHHHhcCC--cEEEEEccccchh-HHHHHHHHHHHc-cchHHHHHHHH
Confidence 33333443221 222222222 22222222232 3889999999996 888888887433 45677888776
No 57
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=92.19 E-value=3.5 Score=53.70 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
+|-+|.+.|+-|+..|+-|=..|..-+.-. ...+....++.+.+.+.|.+.|+.+++.++.|.+=+|||
T Consensus 200 ~ll~L~arm~PLraSLdfLP~Ri~~F~~ra------~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied 268 (683)
T PF08580_consen 200 SLLALFARMQPLRASLDFLPMRIEEFQSRA------ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIED 268 (683)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566677777777765543333221110 112333344555566678888999999999998888886
No 58
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=92.15 E-value=0.27 Score=56.22 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=27.1
Q ss_pred CcEEEEEecCCCCcchhHHHHHHHHHhcCCCCH
Q 000624 119 QNVLLMHCERGGWPVLAFMLAALLIYRKQFTGE 151 (1385)
Q Consensus 119 ~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~ 151 (1385)
+-=|++||++||-|| |+++|||+.+.+.....
T Consensus 136 ~~PvL~HC~~GkdRT-Gl~~al~r~~~~~~~~~ 167 (249)
T COG2365 136 NGPVLIHCTAGKDRT-GLVAALYRKLVGGSDET 167 (249)
T ss_pred cCCEEEecCCCCcch-HHHHHHHHHHhCCchhH
Confidence 456899999999995 99999999998876544
No 59
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=91.76 E-value=2.9 Score=49.67 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=4.5
Q ss_pred cchhhhhhh
Q 000624 1040 RVQLIELRR 1048 (1385)
Q Consensus 1040 ~i~lLD~KR 1048 (1385)
..+||..++
T Consensus 489 vatiLsRRi 497 (518)
T KOG1830|consen 489 VATILSRRI 497 (518)
T ss_pred HHHHHHHHH
Confidence 445555544
No 60
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.72 E-value=0.47 Score=58.12 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCcchhHHHHHHHHHhcCC-----CCHHHHHHHHHHhc
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF-----TGEQKTLDMIYKQA 162 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~-~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~-----~~~~~al~~~~~~~ 162 (1385)
-|.|++.|. ....++.+++. .-+...+ ..=++|||.+|.||+ |++++...+..... ....+.+..+..+|
T Consensus 271 ~WPd~~~p~-~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gRt-gt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR 346 (415)
T KOG0789|consen 271 NWPDHGAPD-SVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGRA-GTLVLIEHALIELQGPEGEPPIDEILREIRYQR 346 (415)
T ss_pred CCccccCCc-chHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCcc-chHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence 345666652 23444444443 2233333 345899999999995 98887664444432 22444444332221
Q ss_pred hhhhhccCCCCCCCCcHHHHHHHHH
Q 000624 163 PRELLQLMSPLNPLPSQLRYLQYVS 187 (1385)
Q Consensus 163 ~~~~~~gv~~~~t~PSQ~RYv~Yf~ 187 (1385)
. ..+ .+.-|-.|++...
T Consensus 347 ~----~~v----qt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 347 P----GAV----QSPLQYLFIYAAT 363 (415)
T ss_pred h----hcc----cchhHHHHHHHHH
Confidence 1 122 6778888877543
No 61
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.18 E-value=11 Score=43.30 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcccccCCCC-CCccceeeccchhhhhccccc--------CCchhHHHHHHHHHHhh--CccccCCcccc
Q 000624 1165 LKRIMQTILSLGNALNHGTA-RGSAVGFRLDSLLKLTDTRAR--------NNKMTLMHYLCKVLAEK--LPELLGFPKDL 1233 (1385)
Q Consensus 1165 L~~lL~~IL~lGN~LN~Gt~-rg~A~GFkL~sL~KL~dtKs~--------d~k~TLLhyl~k~l~ek--~pell~f~~eL 1233 (1385)
.+++|++.-.+-+.++.... .....+|+++.=.|+.|+|.. +.+.+|.+.|.+.+..+ .-..+...-|+
T Consensus 81 VkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~ 160 (267)
T PF10234_consen 81 VKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLEL 160 (267)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCH
Confidence 34444444444444443321 111245555554567776642 45677888887765332 22334455677
Q ss_pred ccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1234 VSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1234 ~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
..++.+-+..++.+..+++.+++.+..+..+-... +.=.++-+.-++.++.+++.|+...=..++.|++
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~L-------e~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEk 229 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANL-------EAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEK 229 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 77887777777777777777777776665443221 1112333444566666666665533333333333
No 62
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=90.65 E-value=22 Score=43.23 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhccC----------CC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1242 IQLKFLAEEMQAISKGLEKVVQELTASEN----------DG-EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1305 (1385)
Q Consensus 1242 v~l~~L~~e~~~l~k~L~kl~~el~~se~----------d~-~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~ 1305 (1385)
-+++.+..||..+.+.|.+++..+....- +. -....|......++.+.++.++++.+-|.-++.
T Consensus 250 ~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq 324 (426)
T smart00806 250 KQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVEQ 324 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888766653210 00 002356666666666666666666555554443
No 63
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.28 E-value=10 Score=48.10 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000624 1113 EQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQT 1171 (1385)
Q Consensus 1113 EqFll~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~ 1171 (1385)
.+..+.-..|-++..-++.|+-+..|.- .+..+.+++..++++.++-+|+..
T Consensus 807 NkI~yRae~v~k~Q~~~Rg~L~rkr~~~-------ri~~~~K~~~l~kns~k~~ei~s~ 858 (1259)
T KOG0163|consen 807 NKIIYRAECVLKAQRIARGYLARKRHRP-------RIAGIRKINALLKNSLKTIEILSR 858 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhch-------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344443344444444555555555543 455566777777777777776654
No 64
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=90.05 E-value=11 Score=42.48 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHH
Q 000624 1250 EMQAISKGLEKVVQELTASENDGEV-SGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVS 1328 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~~se~d~~~-~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~ 1328 (1385)
+++.+.+.|.+.+..+......+.. .+.+ ..+..=+..++.++..++..|+.+.+..+.=+..|-.+. ..+|-.
T Consensus 136 ~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~-~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k----~~d~k~ 210 (236)
T PF09325_consen 136 EYQNAEKELQKKKAQLEKLKASGKNRQDKV-EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEK----VKDFKS 210 (236)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3444444455544444333222111 1222 334455666666666666666666666655555554431 345555
Q ss_pred HHHHHHHHHHHHHHHH
Q 000624 1329 TLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1329 ~l~~Fi~~fkka~een 1344 (1385)
+|.+|+..-....++.
T Consensus 211 ~l~~~~~~~i~~~~~~ 226 (236)
T PF09325_consen 211 MLEEYAESQIEYQKKM 226 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665554444433
No 65
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.10 E-value=11 Score=49.87 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000624 1142 VSDLRTSLNIINSASEEVRNSIKLKRIMQTI 1172 (1385)
Q Consensus 1142 v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~I 1172 (1385)
++.|+..++.+..-++.+|+-..++..++++
T Consensus 204 l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l 234 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERVRERERKKSKIELL 234 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444444
No 66
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=88.81 E-value=0.63 Score=48.42 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=40.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcC-CCcEEEEEecCC--CCcc-hhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000624 92 YEGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERG--GWPV-LAFMLAALLIYRKQFTGEQKTLDMIY 159 (1385)
Q Consensus 92 d~~~P~p~L~~l~~~c~~~~~WL~~d-~~NVvvvHCk~G--kgr~-tg~~ia~yLly~~~~~~~~~al~~~~ 159 (1385)
|-|+ +.|.+|++||..+++-|+.. .++-.||||.+. +.|+ .+++||||++..... ++++|+..+.
T Consensus 40 DFGP--lnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l~ 108 (141)
T PF14671_consen 40 DFGP--LNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPLA 108 (141)
T ss_dssp --------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHT
T ss_pred cCCC--ccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 4454 49999999999999999882 224466666544 3333 689999998866554 6677888773
No 67
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.69 E-value=17 Score=46.67 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVG 1304 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~ 1304 (1385)
..+.-|.+|.+++..+......++
T Consensus 414 ~~kneL~~a~ekld~mgthl~mad 437 (1265)
T KOG0976|consen 414 AAKNELQEALEKLDLMGTHLSMAD 437 (1265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344445555555555544444333
No 68
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.55 E-value=0.35 Score=60.10 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=53.5
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhcCCCCHH-----HHHHHHHHh
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQ-----KTLDMIYKQ 161 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~~~~~~~-----~al~~~~~~ 161 (1385)
-|.++|.|. .-.-|+.|-+.+.+.+..- .--|+|||-+|.||| ||.|..=|+..++..++. .+|+++..+
T Consensus 899 SWp~egvPa-sarslLdFRRKVNK~YRGR-ScpIiVH~sdGaGRT-G~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 899 SWPDEGVPA-SARSLLDFRRKVNKCYRGR-SCPIIVHCSDGAGRT-GTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred cccccCCcc-chHHHHHHHHHhhhhccCC-CCceEEEccCCCCcc-ceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 567888874 6677889999998888654 556999999999995 998887777777766554 467776443
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.17 E-value=17 Score=48.00 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=53.2
Q ss_pred HhhhhhcCCCHHHHHHHHhccCCC--CCcchhHHHHHHHhCCCcHHHHHHHHHH--HHHHH---hhHHHHH-HHHHHHHH
Q 000624 1083 VDNLIKFCPTKEEMEVLKNYNGDK--GNLGKCEQFFLELMKVPRVESKLRVFSF--KIQFQ---TQVSDLR-TSLNIINS 1154 (1385)
Q Consensus 1083 le~Llk~~Pt~EE~~~Lk~y~gd~--~~L~~~EqFll~L~~Iprl~~RL~~l~F--k~~f~---~~v~~l~-~~L~~v~~ 1154 (1385)
|..|+++.+... +.+|.-..|.. .....-|.--..|+.-.+++.|.-++=. ...|. ..+..++ -.-+.+..
T Consensus 525 Va~Li~vkd~~~-~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~ 603 (1174)
T KOG0933|consen 525 VAKLIKVKDRSY-ATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVEL 603 (1174)
T ss_pred HHHHheeCcchH-HHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHH
Confidence 556677766555 44444333321 2233445555556555555554322111 11111 1122222 12357888
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcccccCCC
Q 000624 1155 ASEEVRNSIKLKRIMQTILSLGNALNHGT 1183 (1385)
Q Consensus 1155 A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt 1183 (1385)
|+..|+-+..++..|++| +||++-..+
T Consensus 604 al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 604 ALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred HHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 999999999999999985 788886554
No 70
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.08 E-value=0.45 Score=62.72 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=47.8
Q ss_pred eEEEecccCCccccccccccccCceeecCCCCCCCCC-----CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcch
Q 000624 60 FMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP-----LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVL 134 (1385)
Q Consensus 60 y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P-----~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~t 134 (1385)
|+|-|..++.++ +|.. |++++|| +..-..|..+......|=+...+.=++|||.+|.||+
T Consensus 968 f~i~n~~~~~~r------------~v~q--fq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rs- 1032 (1087)
T KOG4228|consen 968 FGVTNEREKQSR------------TVRQ--FQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRT- 1032 (1087)
T ss_pred heeeeccccCce------------EEEE--EEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcce-
Confidence 777777754332 2222 2445554 2244556666667777777776777999999999996
Q ss_pred hHHHHHHHHHhcC
Q 000624 135 AFMLAALLIYRKQ 147 (1385)
Q Consensus 135 g~~ia~yLly~~~ 147 (1385)
|+.||+-++...+
T Consensus 1033 g~f~ai~~l~e~~ 1045 (1087)
T KOG4228|consen 1033 GTFCAISILLERM 1045 (1087)
T ss_pred eehHHHHHHHHHH
Confidence 8877777665553
No 71
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.32 E-value=16 Score=40.70 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=32.2
Q ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccC
Q 000624 1112 CEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNH 1181 (1385)
Q Consensus 1112 ~EqFll~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~ 1181 (1385)
+|-++..++-+|- ..|...++|+..+...+...-...-.+.-+|--|.--...+++-...=..|+..|.
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~ 79 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANP 79 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence 5666666666555 55555556655554433322222222333333333344445555444444555443
No 72
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=85.08 E-value=35 Score=35.59 Aligned_cols=33 Identities=3% Similarity=0.046 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1308 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1308 (1385)
+.....|.............+....+.+.....
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~ 72 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESNE 72 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777766655443
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.54 E-value=61 Score=39.71 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=25.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcccc
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRNSI-KLKRIMQTILSLGNAL 1179 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~S~-~L~~lL~~IL~lGN~L 1179 (1385)
.+...+..++..|..+....+.|..-+ .=+.+|..+|+.-+.+
T Consensus 84 ~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 84 ETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666666665433 5566666666665554
No 74
>PRK11637 AmiB activator; Provisional
Probab=84.53 E-value=36 Score=42.24 Aligned_cols=22 Identities=9% Similarity=0.336 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 000624 1140 TQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
..+..+...|..+...+.++..
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 75
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.39 E-value=69 Score=35.16 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000624 1279 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1279 ~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een 1344 (1385)
...+..=+..++..++.++..|..+......=+..|-.. ...+|-.+|..|+.......+++
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~----~~~dlk~~l~~~~~~qi~~~~~~ 208 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHEE----RARDLKAALKEFARLQVQYAEKI 208 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777777777766666554444444321 12345555555555554444433
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.21 E-value=78 Score=40.81 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhH
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRNSI 1163 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~S~ 1163 (1385)
...+.+..++..+..+..++++|.++.
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e 131 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESE 131 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888888876653
No 77
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=84.08 E-value=78 Score=35.49 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
..+..=+..++.++..++..|+.+.+..++=+..|-.+- ..+|-..|..|+......
T Consensus 146 ~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r----~~dfk~~l~~~~e~~ie~ 202 (216)
T cd07627 146 NSLLSELEEAERRASELKKEFEEVSELIKSELERFERER----VEDFRNSVEIYLESAIES 202 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345555677777777777777777777766555554431 234444555554444333
No 78
>PLN03188 kinesin-12 family protein; Provisional
Probab=83.85 E-value=90 Score=43.03 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
|-+-+.+.+++...|.+.++++++-..++
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~egi~dv 1140 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEGIDDV 1140 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666555544333
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.61 E-value=28 Score=46.13 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.3
Q ss_pred CCchhHHHHHHHHHHh
Q 000624 1206 NNKMTLMHYLCKVLAE 1221 (1385)
Q Consensus 1206 d~k~TLLhyl~k~l~e 1221 (1385)
.+...+||||++.+.+
T Consensus 713 ~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYE 728 (1018)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4567899999988654
No 80
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=83.39 E-value=49 Score=35.05 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
+..++.++...+..|..+...+..-+..|-+.. ..+|...|..|+......+++..
T Consensus 130 l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~----~~~~~~~L~~~~~~q~~~~~~~~ 185 (194)
T cd07307 130 LAEAEEELQEAKEKYEELREELIEDLNKLEEKR----KELFLSLLLSFIEAQSEFFKEVL 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666666666666666666655555554432 22466677777777655555443
No 81
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.29 E-value=21 Score=44.02 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCCC
Q 000624 1252 QAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLA-----LLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1252 ~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~-----~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
.+|.+++.+.++++..+.-|.-....-.+.+.+.+..+...+.+.. ..+..+...+.+++.-||..+
T Consensus 383 ~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~~~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 383 AELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESGERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHhccccchHHHHHHHHHHHHHHHHhCCCc
Confidence 3444555555555444332221112233445555555555555554 566666666777777777654
No 82
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.11 E-value=7.5 Score=49.92 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
+.+.+.+..|-+.....++.|+.+..++.+.++.+
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777777776666554
No 83
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.05 E-value=16 Score=41.50 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
+.|...|++++..++ .++.|-......+-.|.++.+|.
T Consensus 132 ~~yl~~Lke~~~Y~~-slk~vlK~RdqkQ~d~E~l~E~l 169 (240)
T cd07667 132 EDFLPVLREYILYSE-SMKNVLKKRDQVQAEYEAKLEAV 169 (240)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666766655543 34555556666666666666663
No 84
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.89 E-value=88 Score=41.26 Aligned_cols=32 Identities=9% Similarity=0.292 Sum_probs=15.6
Q ss_pred hhccCCCChhHHHHhHhccCCCCCCHHHHhhh
Q 000624 1055 MLTKVKIPLPDLMGSVLALDDSALDIDQVDNL 1086 (1385)
Q Consensus 1055 ~L~klkl~~~ei~~aIl~lD~~~L~~e~le~L 1086 (1385)
-|.-+++.-.|-...|+++|.-.+..++++..
T Consensus 239 kLetlR~kR~EDk~Kl~ElekmkiqleqlqEf 270 (1243)
T KOG0971|consen 239 KLETLRLKRAEDKAKLKELEKMKIQLEQLQEF 270 (1243)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555544444433
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.61 E-value=78 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.8
Q ss_pred hhccCCCChhHHHHhHhccCCCC
Q 000624 1055 MLTKVKIPLPDLMGSVLALDDSA 1077 (1385)
Q Consensus 1055 ~L~klkl~~~ei~~aIl~lD~~~ 1077 (1385)
.-.+++-..+++++.|.++++..
T Consensus 261 GT~ry~~~I~~~~~rv~~L~e~~ 283 (1293)
T KOG0996|consen 261 GTNRYKEPIEELMRRVERLNEDR 283 (1293)
T ss_pred cccccchhHHHHHHHHHhhhHHH
Confidence 34455556667777777666543
No 86
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=81.38 E-value=63 Score=39.96 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred chhhhhhhhhhhhhhhccCCCChhHHHHhHhccCC
Q 000624 1041 VQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDD 1075 (1385)
Q Consensus 1041 i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~ 1075 (1385)
.+|.|-=-..+|+++...++....++-.+-..+|.
T Consensus 113 ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~ 147 (412)
T PF04108_consen 113 KTLYDFVDEDSVEILRENLKISIDELQAIQEQLDN 147 (412)
T ss_pred CcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666677777766665444444433333443
No 87
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=81.29 E-value=49 Score=37.10 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
+.+|-..-..+-.+..+...+.+....++..+||..
T Consensus 137 i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~ 172 (217)
T PF10147_consen 137 IAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYK 172 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 334444444444445556666777889999999974
No 88
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.97 E-value=7.2 Score=52.00 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHHHHHhhccC-CCC--chhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1251 MQAISKGLEKVVQELTASEN-DGE--VSGNFC------KLLKEFLSYAEGEVRSLALLYSSVGRNA 1307 (1385)
Q Consensus 1251 ~~~l~k~L~kl~~el~~se~-d~~--~~d~F~------~~l~~Fl~~a~~~l~~L~~~~~~~~~~~ 1307 (1385)
|.++...+++++.++.++.+ .|. ..+.|. +.+..-++..+.++..++..++++.+.|
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665433 221 134552 3344444444444444444444444443
No 89
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.61 E-value=40 Score=43.70 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHH
Q 000624 1247 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQ 1325 (1385)
Q Consensus 1247 L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~ee 1325 (1385)
|+-|+.+....++.++..|++++.. -.+|.--+..-+++|..|+++-+.+.....+|+.-|.-|.+++..+.
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekE-------N~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar~Kp~~ 570 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKE-------NQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSARCKPGN 570 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhh-------hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCcc
Confidence 3444444444444444444444432 13566667777889999999999999999999999999998887663
No 90
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.64 E-value=66 Score=40.06 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 000624 1288 YAEGEVRSLALLYSSVGRNADALAQYFGEDPAR 1320 (1385)
Q Consensus 1288 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1320 (1385)
..++++++..+..+.+++..++|+.-||-.-..
T Consensus 620 ~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 620 RLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Confidence 334456666777777888899999999975433
No 91
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=79.60 E-value=1.3 Score=58.57 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=33.7
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHH--hcCCCcEEEEEecCCCCcchhHH
Q 000624 89 PRHYEGCPLLTMETVHHFLRSSESWL--SLGHQNVLLMHCERGGWPVLAFM 137 (1385)
Q Consensus 89 P~~d~~~P~p~L~~l~~~c~~~~~WL--~~d~~NVvvvHCk~Gkgr~tg~~ 137 (1385)
-|.|||.|. .-.-|+.|.+-+..+- .+++ +||||.||-||+ |+.
T Consensus 702 ~Wpd~gvPe-~~t~lL~f~rrvk~~~p~~aGP---iVVHCSAGvGRT-G~f 747 (1087)
T KOG4228|consen 702 AWPDHGVPE-TPTGLLKFRRRVKTFNPPDAGP---IVVHCSAGVGRT-GCF 747 (1087)
T ss_pred cCCCCCCcc-cchHHHHHHHHhccCCCcCCCC---EEEECCCCCCCc-ceE
Confidence 377899884 3345678999888877 5565 899999999996 753
No 92
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=79.52 E-value=1.8 Score=56.10 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
+.|+.|+..+..+|++|+...---.+.-..+..||.++
T Consensus 282 ~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~ 319 (619)
T PF03999_consen 282 QNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDS 319 (619)
T ss_dssp --------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccc
Confidence 35667777777777776665443344444455555443
No 93
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=78.87 E-value=41 Score=44.74 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHhccc
Q 000624 1143 SDLRTSLNIINSASEE------VRNSIKLKRIMQTILSLGNA 1178 (1385)
Q Consensus 1143 ~~l~~~L~~v~~A~~e------Lr~S~~L~~lL~~IL~lGN~ 1178 (1385)
..+..-|.++..+++. ..-.++|..|++.||.-.|.
T Consensus 163 ~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~ 204 (802)
T PF13764_consen 163 NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANS 204 (802)
T ss_pred CCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555 34456777888888877664
No 94
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.48 E-value=35 Score=43.29 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=9.0
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 000624 1156 SEEVRNSIKLKRIMQTILS 1174 (1385)
Q Consensus 1156 ~~eLr~S~~L~~lL~~IL~ 1174 (1385)
-+.|.++++|...++-++.
T Consensus 214 ~~rLsn~ekl~~~~~~a~~ 232 (557)
T COG0497 214 RKRLSNSEKLAEAIQNALE 232 (557)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3344455555555544433
No 95
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=77.43 E-value=47 Score=42.44 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=13.9
Q ss_pred cCCCCCCccceeeccchhhhhc
Q 000624 1180 NHGTARGSAVGFRLDSLLKLTD 1201 (1385)
Q Consensus 1180 N~Gt~rg~A~GFkL~sL~KL~d 1201 (1385)
|.+-.++.-.+|.+++.+|+..
T Consensus 479 nrkp~~~~~k~~D~~~~Lk~sk 500 (661)
T KOG2256|consen 479 NRKPKASSVKPIDFDSTLKLSK 500 (661)
T ss_pred cCCccccccCCCCeeEEeecCH
Confidence 4444444457788888877754
No 96
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.38 E-value=72 Score=34.15 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1292 EVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAE 1356 (1385)
Q Consensus 1292 ~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~ 1356 (1385)
....|.+.+.+..+.++++...+-+--- .-..++..++..+.+-.+|+.++.-.++++.+
T Consensus 79 ~~~~l~d~inE~t~k~~El~~~i~el~~-----~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r 138 (165)
T PF09602_consen 79 TGNSLNDSINEWTDKLNELSAKIQELLL-----SPSKSSFSLLSQISKQYEETVKQLIEQQKLTR 138 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666644211 12335556666666666676665544444433
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.23 E-value=40 Score=48.01 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 000624 1124 RVESKLRVFSFKIQF--QTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSL 1175 (1385)
Q Consensus 1124 rl~~RL~~l~Fk~~f--~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~l 1175 (1385)
.++.-|+.+++..+= ...+++++..|..+....++|+.+.+++.+++-++..
T Consensus 212 ~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~ 265 (1486)
T PRK04863 212 AITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITE 265 (1486)
T ss_pred hHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhh
Confidence 344444444444331 2237899999999999999999999999999766544
No 98
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=76.12 E-value=25 Score=39.50 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000624 1278 FCKLLKEF 1285 (1385)
Q Consensus 1278 F~~~l~~F 1285 (1385)
|.+.+.+|
T Consensus 42 F~~aL~~~ 49 (215)
T cd07604 42 FAEALEKL 49 (215)
T ss_pred HHHHHHHH
Confidence 33333333
No 99
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=75.54 E-value=19 Score=36.39 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=47.6
Q ss_pred EEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-----cccCCEEEE
Q 000624 206 CVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-----HIQGDVVLE 279 (1385)
Q Consensus 206 ~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-----~v~GDV~i~ 279 (1385)
=+.-++++..+..+.|.||++|+-+.. .+.|....+... .|. +.+.|.+.. .-...+.|.
T Consensus 5 V~~A~~L~~~d~~g~~dpYv~v~l~~~----------~~kT~v~~~t~nP~Wn----e~f~F~v~~~~~~~~~~~~l~~~ 70 (126)
T cd08682 5 VLQARGLLCKGKSGTNDAYVIIQLGKE----------KYSTSVKEKTTSPVWK----EECSFELPGLLSGNGNRATLQLT 70 (126)
T ss_pred EEECcCCcCCCCCcCCCceEEEEECCe----------eeeeeeecCCCCCEeC----ceEEEEecCcccCCCcCCEEEEE
Confidence 344456666666678999999986531 233322211111 222 124454433 134467788
Q ss_pred EEecCCcccccceEEEEEeeccccc
Q 000624 280 CISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
||+.+. .++...|.++.|...=+.
T Consensus 71 v~d~~~-~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 71 VMHRNL-LGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred EEEccc-cCCCceeEEEEEEHHHhh
Confidence 998763 345667888888776654
No 100
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=75.11 E-value=84 Score=38.65 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=23.7
Q ss_pred cceeeccchhhhhcc-cccCCchhHHHHHHHHHHhh
Q 000624 1188 AVGFRLDSLLKLTDT-RARNNKMTLMHYLCKVLAEK 1222 (1385)
Q Consensus 1188 A~GFkL~sL~KL~dt-Ks~d~k~TLLhyl~k~l~ek 1222 (1385)
..||-|..|+-+.+. .++|-|.=-|.||.+.-+-|
T Consensus 472 Tf~~il~tLLAIGNfLnGT~~KgFeLsYLeKvsEVK 507 (817)
T KOG1925|consen 472 TFRCILATLLAIGNFLNGTQSKGFELSYLEKVSEVK 507 (817)
T ss_pred hHHHHHHHHHHHhccccCccccceehHhhhhchhhc
Confidence 357778888877664 34566766788987765443
No 101
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=75.04 E-value=8.7 Score=47.76 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC-------CChHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000624 1294 RSLALLYSSVGRNADALAQYFGEDPAR-------CPFEQVVSTLLN----FVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1294 ~~L~~~~~~~~~~~~~l~~yFGEdp~~-------~~~eeff~~l~~----Fi~~fkka~een~k~ 1347 (1385)
+.|-.+++.+.+...++..+||-+++. .++.+++.++.+ |...-+.+.-||.=|
T Consensus 576 K~llkL~~~i~~~sqkI~~~l~~ndkq~~~Fnn~fSlAQl~tI~et~r~Gf~ktC~~cTaeN~~R 640 (802)
T TIGR03031 576 KALLKLIQTIPDISQKIQSHLGHNDKQALIFNNPFSLAQLYTILETKRDGFHKTCVACTAENYWR 640 (802)
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCHHHHHHhcChhhHHHHHHHHhcccccccccchhhhhhhhhh
Confidence 456677888888889999999987643 244556666654 333333444555433
No 102
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.03 E-value=79 Score=35.46 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1342 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~e 1342 (1385)
+..++.+++..+..|.++.+...+-+..|-.. ...+|=.+|.+|+..-...+.
T Consensus 137 i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~----k~~d~K~~l~~fv~~~m~~~~ 189 (211)
T cd07598 137 ISQAESELQKASVDANRSTKELEEQMDNFEKQ----KIRDIKTIFSDFVLIEMLFHA 189 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888887766666543 235566666677766544443
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.68 E-value=70 Score=41.42 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccC
Q 000624 1143 SDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNH 1181 (1385)
Q Consensus 1143 ~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~ 1181 (1385)
++|....+.+...|.+|- .|..=+...|+=.|-+|.
T Consensus 162 ~eIf~~~~~L~nk~~~lt---~~~~q~~tkl~e~~~en~ 197 (1265)
T KOG0976|consen 162 HDIFMIGEDLHDKNEELN---EFNMEFQTKLAEANREKK 197 (1265)
T ss_pred HHHHHHHHHHhhhhhHHh---HHHHHHHHHHHHHHHHHH
Confidence 344444444444444441 244445555555555554
No 104
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=74.13 E-value=1.1e+02 Score=34.45 Aligned_cols=54 Identities=6% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFV 1338 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fk 1338 (1385)
.+..=+..++.++..++..|+.+.+..+.=+..|-.+- ..+|-..|..|+....
T Consensus 153 ~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~er----v~dfk~~l~~~le~~i 206 (224)
T cd07623 153 QAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNR----VKDFKDIIIKYLESLL 206 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666655555554321 2334444444444433
No 105
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=73.94 E-value=20 Score=37.75 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=66.9
Q ss_pred CCceeeccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCcccccccccccc--CceeecCCCC
Q 000624 14 DGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEY--DMTVMDYPRH 91 (1385)
Q Consensus 14 lDLtYIT~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~--~~~V~~~P~~ 91 (1385)
.|..|.-.||+|. . ..|......+|+- .-||-=+.-+.|......+..+- ...+-|.-+.
T Consensus 7 i~~~~f~t~Ivv~--P---------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~ 68 (172)
T COG5350 7 IDFDPFMTRIVVS--P---------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP 68 (172)
T ss_pred cccccceeeeEec--h---------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence 4556666777765 1 3345566667775 35665555455433322222221 1122333445
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchh-HHHHHHHHHhcC
Q 000624 92 YEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLA-FMLAALLIYRKQ 147 (1385)
Q Consensus 92 d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg-~~ia~yLly~~~ 147 (1385)
+.|+-.|.-..+..+..-+++|=..-+ +||||-+|-+|+++ .|++++-++..+
T Consensus 69 ~~g~~ap~e~Hv~~i~DF~~~wp~~ap---llIHC~aGISRStA~A~i~a~ala~~~ 122 (172)
T COG5350 69 DDGWIAPGEAHVRAIIDFADEWPRFAP---LLIHCYAGISRSTAAALIAALALAPDM 122 (172)
T ss_pred CccccCCCHHHHHHHHHHHhcCccccc---eeeeeccccccchHHHHHHHHhhcccc
Confidence 566555566777777777778866555 89999999999865 466666665443
No 106
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.87 E-value=1.2e+02 Score=34.98 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.5
Q ss_pred HHHhcc
Q 000624 1098 VLKNYN 1103 (1385)
Q Consensus 1098 ~Lk~y~ 1103 (1385)
.|+.|.
T Consensus 32 ~L~~~~ 37 (264)
T PF06008_consen 32 QLRSYR 37 (264)
T ss_pred HHHHHh
Confidence 344443
No 107
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.55 E-value=1.5e+02 Score=33.90 Aligned_cols=61 Identities=7% Similarity=0.146 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ 1341 (1385)
|++. .+..=+.+++.++..++..|+++.+..++=+.-|-++- .++|=..|..|+..-..+.
T Consensus 159 dK~~-~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er----~~Dfk~~v~~fles~ie~q 219 (234)
T cd07665 159 DKLQ-QAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEK----SKDFKNHIIKYLETLLHSQ 219 (234)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4443 44555677778888888888887777766556665532 3445555555555444443
No 108
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.33 E-value=1.1e+02 Score=39.32 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1292 EVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1292 ~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
++-.|+..|+.+...|+.++.+|||... ..+++---|.+.-.+|+...++..
T Consensus 905 ~~p~~~~~ledL~qRy~a~LqmyGEk~E--e~EELrlDl~dlK~mYk~QIdeLl 956 (961)
T KOG4673|consen 905 RVPGIKAELEDLRQRYAAALQMYGEKDE--ELEELRLDLVDLKEMYKEQIDELL 956 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455677888888899999999999532 235555555555556655555443
No 109
>PTZ00332 paraflagellar rod protein; Provisional
Probab=73.02 E-value=1.4e+02 Score=37.09 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1292 EVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1292 ~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
+++-.+.+..-+...|.-+..|+.|+.
T Consensus 220 k~ql~Erl~~Li~Dk~~iI~~~~~e~~ 246 (589)
T PTZ00332 220 KVQLQERLIELVADKFRLIGKCEEENK 246 (589)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcc
Confidence 333344444445555666666776654
No 110
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.00 E-value=78 Score=35.19 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~ 1266 (1385)
+..++.++.+|+..|+++.+...
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~ 26 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCS 26 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455555555555555544443
No 111
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.70 E-value=1.1e+02 Score=39.25 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccccC
Q 000624 1147 TSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARN 1206 (1385)
Q Consensus 1147 ~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d 1206 (1385)
..+..++.||+.||.+..+-++-+-+-.+..++-..-.|....-|.|++|++-.|.++.|
T Consensus 149 ~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l~e~~dlsgId 208 (797)
T KOG2211|consen 149 MVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSLLEVLDLSGID 208 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHHHHHhhhcchH
Confidence 357788899999999876666555544433333322234445568899999888888764
No 112
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.99 E-value=1.9e+02 Score=35.63 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000624 1278 FCKLLKEFLSYAEGEVRS 1295 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~ 1295 (1385)
..+.++.|+.+...+++.
T Consensus 456 ~~~~I~~~i~eln~~i~~ 473 (622)
T COG5185 456 INESIKKSILELNDEIQE 473 (622)
T ss_pred chHhHHHHHHHHhHHHHH
Confidence 445677777777666554
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=71.92 E-value=3.1e+02 Score=35.55 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHH
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRNSIK 1164 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~S~~ 1164 (1385)
+..+.++.++..+..+..++++|+.+..
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~ 136 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEE 136 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777788888888888876543
No 114
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.79 E-value=1.6e+02 Score=40.40 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
.++.+...+.++.+.+++.+.+....++ -.+....-+..++.++..|.....+.++.+++...-|
T Consensus 406 ~lK~~~~k~kKleke~ek~~~~~~e~e~-------~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 406 KLKRLTSKIKKLEKEIEKARRKKSELEK-------APEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh-------CchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444333222 1223344445555555555555555555554443333
No 115
>PRK10869 recombination and repair protein; Provisional
Probab=71.52 E-value=81 Score=40.58 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 000624 1150 NIINSASEEVRNSIKLKRIMQTILS 1174 (1385)
Q Consensus 1150 ~~v~~A~~eLr~S~~L~~lL~~IL~ 1174 (1385)
+.+..-.+.|.+..++...++.++.
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~~ 232 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNALQ 232 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544
No 116
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=71.51 E-value=11 Score=42.37 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1288 YAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1288 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
.++++++..++.|.+..+.....+.-|-+... +....|.+|+..
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~-----e~~~~L~~lv~A 189 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKESEA-----DQYRDLTDLLDA 189 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHH
Confidence 35667777777777777777777776666422 345556666554
No 117
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=70.81 E-value=40 Score=43.26 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=15.5
Q ss_pred ccCCCCCCCCcHHHHHHHHHH
Q 000624 168 QLMSPLNPLPSQLRYLQYVSR 188 (1385)
Q Consensus 168 ~gv~~~~t~PSQ~RYv~Yf~~ 188 (1385)
.|-++-+-+-||+--|+|.+.
T Consensus 150 SGESGAGKTEstK~vLrYLce 170 (1259)
T KOG0163|consen 150 SGESGAGKTESTKAVLRYLCE 170 (1259)
T ss_pred ecCCCCCcchhHHHHHHHHHh
Confidence 355566678999988888875
No 118
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.43 E-value=99 Score=38.18 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCC--CChHHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNA-DALAQYFGEDPAR--CPFEQVVSTLLNFVKMF 1337 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~-~~l~~yFGEdp~~--~~~eeff~~l~~Fi~~f 1337 (1385)
|+++++..++.|+.+...+ .+|-..|+..-.. ..|+.|+.+=..|..+.
T Consensus 162 AeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 162 AEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 6777777777777666543 5565666553221 13444554444455544
No 119
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.42 E-value=20 Score=36.48 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1287 SYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1287 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
.....++..|+..+.++...|..++..|||..
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 44456677888888889999999999999953
No 120
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.87 E-value=1.4e+02 Score=38.84 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1121 KVPRVESKLRVFSFKI-QFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1121 ~Iprl~~RL~~l~Fk~-~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
+...+..+|+.|.|++ ++..++.|++-.+.+...+++.+.+.
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q 480 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ 480 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH
Confidence 3344555666666654 34455666665555555555555443
No 121
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.61 E-value=3.2e+02 Score=37.37 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.2
Q ss_pred hhhhhhhhcc
Q 000624 1049 ANNCEIMLTK 1058 (1385)
Q Consensus 1049 a~Ni~I~L~k 1058 (1385)
.--|.|.|+.
T Consensus 109 ~A~IsItL~N 118 (1074)
T KOG0250|consen 109 SAKISITLSN 118 (1074)
T ss_pred ceEEEEEEec
Confidence 3344444443
No 122
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.08 E-value=93 Score=31.76 Aligned_cols=99 Identities=24% Similarity=0.238 Sum_probs=59.2
Q ss_pred CCchhHHHHHHHHHHhhCccccCCccccccHHHHHh------hhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHH
Q 000624 1206 NNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTK------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFC 1279 (1385)
Q Consensus 1206 d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Ask------v~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~ 1279 (1385)
.+...++..+...|+..-.++..+..++..+..... +.+....++++...+.+..++.++.... .=+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~-------~ry 84 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQ-------QRY 84 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 445678888888888877777777777777654322 2222223333444444445555544321 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
..+-..+.+-.+++.+|+....++++.|+..+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777776654
No 123
>PRK10132 hypothetical protein; Provisional
Probab=67.63 E-value=30 Score=34.57 Aligned_cols=74 Identities=8% Similarity=0.174 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
+.+.|..||+.|...++.+-++...... ...+..+.++...+..+..++..+.............+-.|-.|+|
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~--~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAK--GEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566777888887777776544432221 1235778888999999999888888776667777888888999987
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=67.54 E-value=3.7e+02 Score=35.44 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=7.1
Q ss_pred HHHhhcHHHHHHHHH
Q 000624 38 EEYKEYLGGIVGQLR 52 (1385)
Q Consensus 38 ~~YRn~i~~V~~~L~ 52 (1385)
++|..-+.-|.+|.+
T Consensus 38 k~ykhVVqsVeKfi~ 52 (894)
T KOG0132|consen 38 KLYKHVVQSVEKFIK 52 (894)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 125
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.41 E-value=2.9e+02 Score=35.21 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCK--LLKEFLSYAEGEVRSLALLYSSVGRN 1306 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~--~l~~Fl~~a~~~l~~L~~~~~~~~~~ 1306 (1385)
+..+..|-+++.+.|+++..++..... ..|-. .+..|....+.++..+..+..++.-.
T Consensus 334 ve~mn~Er~~l~r~l~~i~~~~d~l~k-----~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 334 VERMNLERNKLKRELNKIQSELDRLSK-----EVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666665555433211 11111 23455555555555555555544433
No 126
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.35 E-value=1.7e+02 Score=38.42 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000624 1279 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1315 (1385)
Q Consensus 1279 ~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1315 (1385)
...+++.+.....++.+|+..+..+......+..+|-
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666555555544443
No 127
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.13 E-value=33 Score=38.41 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 000624 1327 VSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1327 f~~l~~Fi~~fkka~ 1341 (1385)
...|..|...++.++
T Consensus 89 ~epLk~Y~~l~k~~k 103 (211)
T cd07598 89 VQPLALYGTICKHAR 103 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 128
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.07 E-value=1.9e+02 Score=31.52 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
.+..+.+++.++.+.+..+..++....++ ......++...+++++.++..++.+.+.+.++.
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKED-------LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555443221 223346677777777777777777766666654
No 129
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.91 E-value=71 Score=35.54 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
++..+++++.+|+..++++.+..
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~ 25 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLC 25 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555554433
No 130
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.62 E-value=1e+02 Score=40.93 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+++-.+...++++++.+.++.+.+..++++.-++.
T Consensus 591 l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 591 LRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444556777777777777777777776655
No 131
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.58 E-value=4.1e+02 Score=34.95 Aligned_cols=12 Identities=8% Similarity=0.520 Sum_probs=7.5
Q ss_pred cccccccccccc
Q 000624 988 SLWAEAQKSDEA 999 (1385)
Q Consensus 988 TIW~~~~~~~~~ 999 (1385)
+||.--+.+.|.
T Consensus 233 ~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 233 HIWTLSDVDGDG 244 (1118)
T ss_pred hheeeeccCCCC
Confidence 799866544444
No 132
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.57 E-value=2.7e+02 Score=32.92 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 000624 1135 KIQFQTQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1135 k~~f~~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
...|...+++|+..++.+..-++.|..
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~ 61 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQK 61 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555544
No 133
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=66.47 E-value=89 Score=38.67 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1324 EQVVSTLLNFVKMFVLAHEENCRQLE 1349 (1385)
Q Consensus 1324 eeff~~l~~Fi~~fkka~een~k~~e 1349 (1385)
+++......|...|.....|..+|+.
T Consensus 335 ~~L~~~Y~~F~~aY~~LL~Ev~RRr~ 360 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSLLLEVERRRA 360 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666655443
No 134
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=66.45 E-value=67 Score=32.08 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=52.5
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1385)
|+++=+.-++++..+..+.|.||++|+..+ +.+|.|....+...-... +.+.|.+. .....+.|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~t~nP~Wn---e~f~f~v~-~~~~~l~~~v~ 68 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYKNLNPVWD---EKFTLPIE-DVTQPLYIKVF 68 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccCCCCCccc---eeEEEEec-CCCCeEEEEEE
Confidence 445555556778777667899999998653 335555432222221111 12444432 13567888888
Q ss_pred ecCCcccccceEEEEEeeccccc
Q 000624 282 SLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
+.+. ......|.++.|...=+.
T Consensus 69 D~d~-~~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 69 DYDR-GLTDDFMGSAFVDLSTLE 90 (121)
T ss_pred eCCC-CCCCcceEEEEEEHHHcC
Confidence 8763 234567888888776665
No 135
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.32 E-value=1.8e+02 Score=34.47 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
.++.++..+...++++++.-................|..-+.......+.++..++.+++...+.-
T Consensus 44 ~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~ 109 (297)
T KOG0810|consen 44 EIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE 109 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555555544332222222223455666777777776666777777777766665543
No 136
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.20 E-value=51 Score=38.88 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=5.4
Q ss_pred hHHHHHHHHHH
Q 000624 1210 TLMHYLCKVLA 1220 (1385)
Q Consensus 1210 TLLhyl~k~l~ 1220 (1385)
+++|-+.+.++
T Consensus 210 svisa~~eklR 220 (365)
T KOG2391|consen 210 SVISAVREKLR 220 (365)
T ss_pred HHHHHHHHHHH
Confidence 45555544443
No 137
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.17 E-value=1.3e+02 Score=34.76 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 000624 1284 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTL 1330 (1385)
Q Consensus 1284 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l 1330 (1385)
.-+..|+.-...+......+.....++ .+||++....+..++-..+
T Consensus 84 ~t~~~a~~L~~~i~~l~~~i~~l~~~~-~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 84 RTLQRAQDLEQFIQNLQDNIQELIEQV-ESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcccCCCCHHHHHHHH
Confidence 333344333333344444444333333 3555533333333333333
No 138
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.96 E-value=58 Score=37.36 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=13.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 000624 1139 QTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1139 ~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
.+.+.++++.++.+.++|..|
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i 34 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLI 34 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655
No 139
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=65.95 E-value=3.3e+02 Score=33.67 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1283 KEFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1283 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
-+-+.+.+++...|-..++.+++-..+
T Consensus 343 lEqYadLqEk~~~Ll~~Hr~i~egI~d 369 (488)
T PF06548_consen 343 LEQYADLQEKHNDLLARHRRIMEGIED 369 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544333
No 140
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.88 E-value=2.1e+02 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCchhHHHHHHHHHHhhCcccc-CCccccccHHHHHhhhHHHHHHHHHH
Q 000624 1206 NNKMTLMHYLCKVLAEKLPELL-GFPKDLVSLEASTKIQLKFLAEEMQA 1253 (1385)
Q Consensus 1206 d~k~TLLhyl~k~l~ek~pell-~f~~eL~~l~~Askv~l~~L~~e~~~ 1253 (1385)
..+..+++||.++.+-+..|.. +-.++|.-|+.|-.+ |+.|++|+..
T Consensus 54 ~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v-~~~I~~E~~~ 101 (200)
T cd00280 54 LKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMV-LESIEKEFSL 101 (200)
T ss_pred hhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHH-HHHHHHhcCC
Confidence 4566789999888776665532 333457778877654 6667777654
No 141
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.61 E-value=3.8e+02 Score=34.22 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Q 000624 1143 SDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNA 1178 (1385)
Q Consensus 1143 ~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~ 1178 (1385)
..|......+..-+++++....+...+++.-..|+.
T Consensus 197 ~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~ 232 (511)
T PF09787_consen 197 QELEERPKALRHYIEYLRESGELQEQLELLKAEGES 232 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444445556666777777777777777776654
No 142
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.48 E-value=88 Score=41.18 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=11.9
Q ss_pred hhhhhhhhhhhhhhccC
Q 000624 1043 LIELRRANNCEIMLTKV 1059 (1385)
Q Consensus 1043 lLD~KRa~Ni~I~L~kl 1059 (1385)
+||.+|-.|+.+.|-.|
T Consensus 407 fLdaq~IknLt~YLe~L 423 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEAL 423 (933)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 56777777777766554
No 143
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=65.39 E-value=82 Score=36.99 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHhCCCcHHHHHH
Q 000624 1108 NLGKCEQFFLELMKVPRVESKLR 1130 (1385)
Q Consensus 1108 ~L~~~EqFll~L~~Iprl~~RL~ 1130 (1385)
-+...+.|+.+|..|-.++..+.
T Consensus 55 I~~~s~~f~~a~~~v~el~~~l~ 77 (291)
T PF10475_consen 55 ISEKSDSFFQAMSSVQELQDELE 77 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778877777766666553
No 144
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=64.56 E-value=24 Score=39.99 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1288 YAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1288 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
.++.+++..+..|.+..+....++.-+-+.. .+....|.+|+..
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~-----~~~~~~L~~lv~A 210 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISSTH-----ANHLRCLRDFVEA 210 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHH
Confidence 3455555556666666555555555555532 1345566666655
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.42 E-value=4e+02 Score=34.03 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000624 1130 RVFSFKIQFQTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1130 ~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
.+|-.+.++.+.+.+++..+..+..++..|
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666555555554444
No 146
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.28 E-value=4.5e+02 Score=37.38 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=3.8
Q ss_pred ccceeec
Q 000624 1187 SAVGFRL 1193 (1385)
Q Consensus 1187 ~A~GFkL 1193 (1385)
.-+|.+|
T Consensus 582 slyGl~L 588 (1201)
T PF12128_consen 582 SLYGLSL 588 (1201)
T ss_pred ccceeEe
Confidence 4556555
No 147
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=64.06 E-value=57 Score=32.92 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=63.6
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccccccCCEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
|.++-|.-++++. ..+.|.||+.|+..+.. ..+.|........ .|. +.+.|++.- -...+.|+|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~--------~~~kT~v~~~t~nP~Wn----e~f~f~~~~-~~~~l~~~v 65 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP--------QKYQSSTQKNTSNPFWD----EHFLFELSP-NSKELLFEV 65 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC--------cEEEeEEEecCCCCccC----ceEEEEeCC-CCCEEEEEE
Confidence 3455566667776 44679999999874311 1123321111111 221 224555421 245688899
Q ss_pred EecCCcccccceEEEEEeecccccCCeEEeecccCcccccCCCCCCCCcEEEEEEEec
Q 000624 281 ISLDSDQEREEMMFRVMFNTAFIRSNILMLNRDEIDILWNSKDLFSKEFRAEVLFSEM 338 (1385)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~FnT~FI~~n~l~l~k~eLD~~~~~k~~fp~dF~vel~F~~~ 338 (1385)
|+.+. ......|.++.|...-+..+.-...+-.|..-...+....-...++|.|.+.
T Consensus 66 ~d~~~-~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 66 YDNGK-KSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EECCC-CCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 98774 3346778888888877653211111122222111123456667788887654
No 148
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=63.93 E-value=3.7e+02 Score=33.48 Aligned_cols=96 Identities=8% Similarity=0.140 Sum_probs=45.4
Q ss_pred HHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCCC----cHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHH
Q 000624 1081 DQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVP----RVESKLRVFS--FKIQFQTQVSDLRTSLNIINS 1154 (1385)
Q Consensus 1081 e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~Ip----rl~~RL~~l~--Fk~~f~~~v~~l~~~L~~v~~ 1154 (1385)
+.|+.|+.-+|..|..+.-..|......|...+.-+..+..|. .+-++++-+. |..+|...+.|+.=..+++.+
T Consensus 95 ~~i~~l~~~L~~ne~~~L~~~lq~~r~ll~qi~~~v~~~~~v~~~l~~~~~qidWLH~Df~~Els~l~Qe~~WQq~Tlld 174 (673)
T COG4192 95 TAIHALLASLPQNEQAALQQGLQELRQLLQQINDLVSARIDVDRRLALFAEQIDWLHQDFGMELSPLRQELQWQQETLLD 174 (673)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Confidence 4566666666666654433334333333444444444444332 1333333222 444455555555444455554
Q ss_pred HHHH--------HHhhHHHHHHHHHHHHhc
Q 000624 1155 ASEE--------VRNSIKLKRIMQTILSLG 1176 (1385)
Q Consensus 1155 A~~e--------Lr~S~~L~~lL~~IL~lG 1176 (1385)
.+.+ |..++.+...++.+-.+-
T Consensus 175 ~i~q~Q~dn~q~v~q~r~~Qqel~~vy~~~ 204 (673)
T COG4192 175 GITQAQVDNGQRVLQYRLYQQELEEVYNVL 204 (673)
T ss_pred hHhhhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 455556666555554443
No 149
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=63.90 E-value=25 Score=39.12 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1248 AEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1248 ~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
..+|.-+..+|++++-+-....-++..+++|...+..-..+.+++++.|++.+..+...+++
T Consensus 185 ~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 185 EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44566677777776644444444566778888777766666666666666655555444444
No 150
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=63.89 E-value=36 Score=38.96 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHhcccccCCCCC
Q 000624 1170 QTILSLGNALNHGTAR 1185 (1385)
Q Consensus 1170 ~~IL~lGN~LN~Gt~r 1185 (1385)
++.+..|+-++.++..
T Consensus 64 ~~M~~~g~~l~~~s~l 79 (244)
T cd07595 64 QSMLESSKELPDDSLL 79 (244)
T ss_pred HHHHHHHHhcCCCChH
Confidence 4455666666555443
No 151
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.88 E-value=1.4e+02 Score=40.23 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVV 1262 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~ 1262 (1385)
+..|.++++.+.+.++++.
T Consensus 204 l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 204 LNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654
No 152
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.64 E-value=1.8e+02 Score=33.14 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ee 1343 (1385)
.+++.-+..|.+++....+.|+.+...|.+-+..-++.-.... ++-+..|.+++..|.....|
T Consensus 157 ~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~E-e~Rl~~lk~~L~~y~~~~~~ 219 (233)
T cd07649 157 KKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLE-VERIEMIRQHLCQYTQLRHE 219 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555445554444444333333332110000 12345566666666666554
No 153
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.36 E-value=1.2e+02 Score=38.75 Aligned_cols=20 Identities=5% Similarity=-0.069 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000624 1285 FLSYAEGEVRSLALLYSSVG 1304 (1385)
Q Consensus 1285 Fl~~a~~~l~~L~~~~~~~~ 1304 (1385)
.+..++.++..++..+...+
T Consensus 256 ~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 256 ALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444443
No 154
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=63.19 E-value=1e+02 Score=28.13 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1305 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~ 1305 (1385)
+.....++++....|+.....+...+. |...+.|...+..|...+..-++.|.+..+.+..
T Consensus 16 ~~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~ 76 (86)
T PF06013_consen 16 LQAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFEEWNQAFRQLNEALEELSQALRQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666655665 5556888888888877776655555555444433
No 155
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.11 E-value=2.8e+02 Score=37.05 Aligned_cols=20 Identities=10% Similarity=0.337 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 000624 1140 TQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eL 1159 (1385)
++.+.|..-+..+..-+++|
T Consensus 325 ERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 156
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=62.86 E-value=1.1e+02 Score=30.16 Aligned_cols=32 Identities=3% Similarity=0.075 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1277 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1308 (1385)
Q Consensus 1277 ~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1308 (1385)
.....|..-........+++...++.+.+...
T Consensus 43 ~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 43 ELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45556666666666666666666666555443
No 157
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=62.58 E-value=2.7e+02 Score=36.86 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=43.7
Q ss_pred HhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCC-------CcHHHHHHHHHHHHH----HHhhHHHHHHH-HH
Q 000624 1083 VDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKV-------PRVESKLRVFSFKIQ----FQTQVSDLRTS-LN 1150 (1385)
Q Consensus 1083 le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~I-------prl~~RL~~l~Fk~~----f~~~v~~l~~~-L~ 1150 (1385)
|.+|+.+--+.--..+|++... ...|+.+++=+..|-+| -.+..+|.-++-+.. +...|..|+.. +-
T Consensus 357 la~LL~L~~~PTR~~ll~e~v~-~gV~~~v~qe~kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~ 435 (988)
T KOG2072|consen 357 LANLLGLPAPPTRKGLLKEAVR-EGVLSKVDQEVKDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIIL 435 (988)
T ss_pred HHHHhCCCCCccHHHHHHHHHH-hccHhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHH
Confidence 4455544322233334444321 34567777666555443 235555555443332 12223333322 33
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 000624 1151 IINSASEEVRNSIKLKRIMQTIL 1173 (1385)
Q Consensus 1151 ~v~~A~~eLr~S~~L~~lL~~IL 1173 (1385)
.+...+.++-+|-+|.+|++++-
T Consensus 436 RllqQvSqiY~sIs~~~l~~La~ 458 (988)
T KOG2072|consen 436 RLLQQVSQIYESISFERLYKLAP 458 (988)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Confidence 44555666677777777777653
No 158
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.54 E-value=5.5e+02 Score=35.00 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhh
Q 000624 1245 KFLAEEMQAISKGLEKVVQELTA 1267 (1385)
Q Consensus 1245 ~~L~~e~~~l~k~L~kl~~el~~ 1267 (1385)
..+.+.++++.+.|++.+..+..
T Consensus 360 ~~~ke~~~~~s~~~e~~e~~~es 382 (1174)
T KOG0933|consen 360 EKLKEAFQEDSKLLEKAEELVES 382 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667766665554
No 159
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.52 E-value=1.5e+02 Score=33.12 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=4.6
Q ss_pred hhhcccccC
Q 000624 1374 LVQNPLKSS 1382 (1385)
Q Consensus 1374 ~~~~~lk~~ 1382 (1385)
++++.||..
T Consensus 165 aLqa~lkk~ 173 (207)
T PF05010_consen 165 ALQASLKKE 173 (207)
T ss_pred HHHHHHHHH
Confidence 445555543
No 160
>PHA03246 large tegument protein UL36; Provisional
Probab=62.42 E-value=7.9e+02 Score=36.81 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=38.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 000624 1273 EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1319 (1385)
Q Consensus 1273 ~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~ 1319 (1385)
..++.|.+.+.. |..+..++++|+..++..+..+++.+..|+-+-.
T Consensus 1767 GPm~~yaeRIDa-L~~LR~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~ 1812 (3095)
T PHA03246 1767 GPMTIYAERIDA-LVRLENRLAELKSELALAEVAWDDTWSTFIHDKD 1812 (3095)
T ss_pred CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC
Confidence 457889998876 5667789999999999999999999999997643
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=61.71 E-value=2e+02 Score=35.52 Aligned_cols=11 Identities=9% Similarity=0.724 Sum_probs=6.2
Q ss_pred hHHHHHHHHHH
Q 000624 1210 TLMHYLCKVLA 1220 (1385)
Q Consensus 1210 TLLhyl~k~l~ 1220 (1385)
.+||++|..+.
T Consensus 197 gMlhW~V~li~ 207 (622)
T COG5185 197 GMLHWMVRLII 207 (622)
T ss_pred HHHHHHHHHHH
Confidence 35666666543
No 162
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.47 E-value=3.3e+02 Score=32.08 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=8.5
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 000624 1139 QTQVSDLRTSLNIINSASEE 1158 (1385)
Q Consensus 1139 ~~~v~~l~~~L~~v~~A~~e 1158 (1385)
.++|.+++...+.++.-+.+
T Consensus 68 neev~elK~kR~ein~kl~e 87 (294)
T COG1340 68 NEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 163
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.70 E-value=2.3e+02 Score=35.54 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 000624 1298 LLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1298 ~~~~~~~~~~~~l~~yFGE 1316 (1385)
+.++.+...-++++.-+|+
T Consensus 491 ~iL~l~d~lR~~~l~~~g~ 509 (586)
T KOG2007|consen 491 EILELCDTLRDSDLLELGV 509 (586)
T ss_pred HHHHHhHHHHHhhHHHhhh
Confidence 3444444444455555665
No 164
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=60.63 E-value=22 Score=40.06 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
.+++++..++.|.+..+.....+.-|-+... +....|..|+..
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~-----e~~~~L~~lveA 197 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLENDV-----EQVSQLSALVEA 197 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHH
Confidence 3566777777777777777666666666432 345556666554
No 165
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=60.20 E-value=73 Score=32.18 Aligned_cols=120 Identities=10% Similarity=0.084 Sum_probs=59.9
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc--ccc-CCEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC--HIQ-GDVV 277 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~--~v~-GDV~ 277 (1385)
|+++=|.=++++..+..+.|.||++|+-.... ..++++..+ .. .|. +.+.|.+.- .+. --+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~----~rT~v~~~t------~nP~Wn----e~f~f~~~~~~~~~~~~l~ 67 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK----KRTRTKPKD------LNPVWN----EKLVFNVSDPSRLSNLVLE 67 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE----ecceeEcCC------CCCccc----eEEEEEccCHHHccCCeEE
Confidence 45555566677776766779999999865311 122233211 11 121 224454421 121 2356
Q ss_pred EEEEecCCcccccceEEEEEeeccccc-CCeEEeecccCcccccCCCCCCCCcEEEEEEE
Q 000624 278 LECISLDSDQEREEMMFRVMFNTAFIR-SNILMLNRDEIDILWNSKDLFSKEFRAEVLFS 336 (1385)
Q Consensus 278 i~~~h~~~~~~~~~~~Fr~~FnT~FI~-~n~l~l~k~eLD~~~~~k~~fp~dF~vel~F~ 336 (1385)
|.+++.+........|.++.|.-.-+. .+.....+-+|..- ....+..-+..+.+.|.
T Consensus 68 ~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 68 VYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 677775532214567888888776664 33333333444431 11223444555555553
No 166
>PLN02939 transferase, transferring glycosyl groups
Probab=60.00 E-value=3.2e+02 Score=37.46 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=23.4
Q ss_pred CChhHHHHhHhccCCCCCCHHH-----HhhhhhcCCCHHHHH
Q 000624 1061 IPLPDLMGSVLALDDSALDIDQ-----VDNLIKFCPTKEEME 1097 (1385)
Q Consensus 1061 l~~~ei~~aIl~lD~~~L~~e~-----le~Llk~~Pt~EE~~ 1097 (1385)
+..+|++..|.+...++|-..+ |+.|.+++-.+|+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (977)
T PLN02939 128 FQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQ 169 (977)
T ss_pred ccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888887777665444 445566665555544
No 167
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.96 E-value=1.9e+02 Score=32.22 Aligned_cols=11 Identities=18% Similarity=0.024 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 000624 1335 KMFVLAHEENC 1345 (1385)
Q Consensus 1335 ~~fkka~een~ 1345 (1385)
+.|.|+.++.+
T Consensus 110 K~FdK~s~~yd 120 (202)
T cd07606 110 RRFDKASLDYE 120 (202)
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 168
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=59.93 E-value=2.2e+02 Score=33.12 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhh--ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTA--SENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSV 1303 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~--se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~ 1303 (1385)
.|+.+...++.+.++=.++.+.|.. +...-++...|+..+.+++..+-..+..|++.++.+
T Consensus 94 ~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetI 156 (277)
T PF15003_consen 94 ALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETI 156 (277)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666665555555554443 333445677888888888888888888887777655
No 169
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=59.89 E-value=27 Score=41.51 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=58.4
Q ss_pred eeeccceEEEecCCC--CCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCC
Q 000624 17 LEISERVFVFDCCFT--TDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1385)
Q Consensus 17 tYIT~RIiam~~~fP--a~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~ 94 (1385)
.-+...|+.| |+. ..++.+..-.-..+++...|++ + ++.|+-.+... +|. +-+++ |
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~----------E~~--~GhI~----G 146 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDY----------EYE--IGHFE----N 146 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHH----------HHh--cCcCC----C
Confidence 5677778888 774 3344333334555666666653 3 48888877642 111 12222 2
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 95 ~P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
+-.+++..+-.+...+++.+....+.-|||||.+|. | +.++++||.-.|
T Consensus 147 Ai~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~-R--s~~aa~~L~~~G 195 (314)
T PRK00142 147 AIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGI-R--CEKASAWMKHEG 195 (314)
T ss_pred CEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCc-H--HHHHHHHHHHcC
Confidence 222356655555544444454456667999996554 5 455666765433
No 170
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.77 E-value=71 Score=35.50 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 000624 1245 KFLAEEMQAISKGLEKVVQ 1263 (1385)
Q Consensus 1245 ~~L~~e~~~l~k~L~kl~~ 1263 (1385)
..++.++.+|...|+++.+
T Consensus 5 ~~~E~~~~~le~~l~kl~K 23 (200)
T cd07639 5 EEVEAEVSELETRLEKLVK 23 (200)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 171
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.58 E-value=7.4e+02 Score=35.58 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC------CChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1296 LALLYSSVGRNADALAQYFGEDPAR------CPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1296 L~~~~~~~~~~~~~l~~yFGEdp~~------~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
......+......++...|+-+.-. ....+|+..+...+...++..++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1311)
T TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLC 414 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555533211 1245567766666666655554443
No 172
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.57 E-value=4.1e+02 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1277 NFCKLLKEFLSYAEGEVRSLALLYSS 1302 (1385)
Q Consensus 1277 ~F~~~l~~Fl~~a~~~l~~L~~~~~~ 1302 (1385)
..+.+++.--..|+..+..|+..|+.
T Consensus 623 tlrtvlkankqtaevaltnlksKYEn 648 (772)
T KOG0999|consen 623 TLRTVLKANKQTAEVALTNLKSKYEN 648 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHhHhhhhh
Confidence 34444555555555556656555543
No 173
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=3.9e+02 Score=35.13 Aligned_cols=45 Identities=24% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccc
Q 000624 1134 FKIQFQTQVSDLRTSLNIINSASEEVRN-SIKLKRIMQTILSLGNA 1178 (1385)
Q Consensus 1134 Fk~~f~~~v~~l~~~L~~v~~A~~eLr~-S~~L~~lL~~IL~lGN~ 1178 (1385)
+...+..++.+++..++.+..-.+.++. +.+|...|...+.=+|.
T Consensus 84 k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t 129 (698)
T KOG0978|consen 84 KISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT 129 (698)
T ss_pred HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4445666777777777777766666644 66777777777666655
No 174
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.39 E-value=4.2e+02 Score=32.63 Aligned_cols=21 Identities=0% Similarity=0.071 Sum_probs=15.3
Q ss_pred CChhHHHHhHhccCCCCCCHH
Q 000624 1061 IPLPDLMGSVLALDDSALDID 1081 (1385)
Q Consensus 1061 l~~~ei~~aIl~lD~~~L~~e 1081 (1385)
++..||+..|..++-..-+.+
T Consensus 9 L~~aEIv~~l~~~~i~~at~e 29 (446)
T KOG4438|consen 9 LSVAEIVICLKDAQIASATEE 29 (446)
T ss_pred CCHHHHHHHHHhcCcccchhh
Confidence 577889988888876655444
No 175
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=59.35 E-value=25 Score=42.57 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1241 KIQLKFLAEEMQAISKGLEKVVQELTASENDG--EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1241 kv~l~~L~~e~~~l~k~L~kl~~el~~se~d~--~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
..++..|..++..+++.++.... ....++. .....|.+....-+...++.+.++++.|+++..-|.+-.
T Consensus 280 ~~~i~~l~~~~~~~~~~l~~~~~--~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~ 350 (370)
T PF02181_consen 280 EQDIKELEKGLEKIKKELEAIEK--DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDP 350 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCT--TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34678888888888887776655 1112221 134689999999999999999999999999988876533
No 176
>PRK10869 recombination and repair protein; Provisional
Probab=59.24 E-value=1.6e+02 Score=37.99 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=3.1
Q ss_pred HHHHhccC
Q 000624 1097 EVLKNYNG 1104 (1385)
Q Consensus 1097 ~~Lk~y~g 1104 (1385)
+.|..|.|
T Consensus 144 ~lLD~~~~ 151 (553)
T PRK10869 144 TLLDAYAN 151 (553)
T ss_pred HHHHHhcc
Confidence 33444433
No 177
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.81 E-value=2.3e+02 Score=32.48 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1313 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1313 (1385)
.+..+++++++.+++.+..+.+. .+ ..=...+..=+..++++...|.....++.+...++-.+
T Consensus 63 ~~e~ei~~~r~r~~~~e~kl~~v-~~----~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 63 QLESEIQEIRERIKRAEEKLSAV-KD----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444211 11 23334566667777777777777777777776666443
No 178
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=58.66 E-value=85 Score=36.42 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1322 PFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKA 1355 (1385)
Q Consensus 1322 ~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~ 1355 (1385)
.+++||..+.+-+.+|.+...-..+++.+++|++
T Consensus 251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5889999998888888776655444444444443
No 179
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=58.62 E-value=5.7e+02 Score=33.96 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=12.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
+-+.+++.+...|+.+..-|++|
T Consensus 27 ~s~~~v~~l~~~ld~a~~e~d~l 49 (701)
T PF09763_consen 27 ESEKQVNSLMEYLDEALAECDEL 49 (701)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666665555555555
No 180
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=58.49 E-value=85 Score=31.23 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=49.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1385)
|+++-|.-++++..+..+.|.||++|+-.... .....++++..+. + ..|. +.+.|.+......-+.|+|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~-~~~~kT~vv~~t~----n-P~Wn----e~f~f~i~~~~~~~l~v~v~ 71 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS-DEKKRTKTIKNSI----N-PVWN----ETFEFRIQSQVKNVLELTVM 71 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC-CccCccceecCCC----C-Cccc----eEEEEEeCcccCCEEEEEEE
Confidence 34455555667766655678999999864210 0112223332221 0 1121 22445443333334778888
Q ss_pred ecCCcccccceEEEEEeecccccC
Q 000624 282 SLDSDQEREEMMFRVMFNTAFIRS 305 (1385)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI~~ 305 (1385)
+.+.. ....|.++.|...=+..
T Consensus 72 d~d~~--~~~~iG~~~~~l~~l~~ 93 (119)
T cd04036 72 DEDYV--MDDHLGTVLFDVSKLKL 93 (119)
T ss_pred ECCCC--CCcccEEEEEEHHHCCC
Confidence 87642 55678888777765553
No 181
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=57.93 E-value=1.6e+02 Score=38.77 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 000624 1228 GFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEV----RSLALLYSSV 1303 (1385)
Q Consensus 1228 ~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l----~~L~~~~~~~ 1303 (1385)
.+..++..+....+.+...+.++++.|...+..+++..............=...+.....++...+ .+|...-+.+
T Consensus 377 ~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 377 ALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555566677777666666555332110000000000112222222222222 2233333444
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 000624 1304 GRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1342 (1385)
Q Consensus 1304 ~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~e 1342 (1385)
...|..+|.-=|+-|.+ ++.++++..+....
T Consensus 457 AqLYHHVC~cNgeTPnR--------VmLD~yr~~r~~~~ 487 (717)
T PF09730_consen 457 AQLYHHVCMCNGETPNR--------VMLDYYRQGRQTRR 487 (717)
T ss_pred HHHHHHHHHccCCCCcc--------HHHHHHHhhhhhhc
Confidence 55567777777777654 35566666655543
No 182
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=57.86 E-value=66 Score=31.82 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCC
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSL-ALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L-~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
++.|.+|+++|...++++-+.-..... ..-++.+.++..-|.+++.++... ...+.+.....+.+=.|-+|+|
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~~a~--~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGSLAG--DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 366788888888888777554332221 123567778888888888888888 4566677777888889999987
No 183
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=57.72 E-value=42 Score=42.94 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1276 GNFCKLLKEFLS---YAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1276 d~F~~~l~~Fl~---~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+.|...++.+.. .+++-.+-..+.++++.....+++...|.
T Consensus 226 ~~Y~~~l~~~t~~~~s~~ei~~~g~~e~~~~~~em~~~~~~~g~ 269 (549)
T PF05960_consen 226 EYYERLLRYYTTTDMSPEEIHELGLAEVARIRAEMQALAREIGF 269 (549)
T ss_dssp HHHHHHHHHHHSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 556666666665 45555555667777777777778877777
No 184
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.55 E-value=41 Score=37.33 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1241 KIQLKFLAEEMQAISKGLEKVVQELTASENDGEV----SGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1241 kv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~----~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
|-++..++.++.+|+..|+++.+.....-+.|.. ...|...|.+|-..+...- .+...+.+....++++..|+..
T Consensus 1 R~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~-~i~~~l~kF~~~l~el~~~~~~ 79 (200)
T cd07603 1 RASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS-LVQNCLNKFIQALQEMNNFHTI 79 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1317 DPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVEN 1361 (1385)
Q Consensus 1317 dp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ 1361 (1385)
=-.... .-+..-|..|++.=-+..+|.+|+-++..++=.....|
T Consensus 80 L~~q~~-~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k 123 (200)
T cd07603 80 LLDQAQ-RTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVK 123 (200)
T ss_pred HHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 185
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=57.42 E-value=5.9e+02 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhccccc
Q 000624 1165 LKRIMQTILSLGNALN 1180 (1385)
Q Consensus 1165 L~~lL~~IL~lGN~LN 1180 (1385)
+..-.+-...||.|..
T Consensus 394 ~~~R~~kfr~~G~~~e 409 (762)
T PLN03229 394 LKHRMLKFRKIGGFQE 409 (762)
T ss_pred HHHHHHHHHHhCCccc
Confidence 3333444566777643
No 186
>PLN03188 kinesin-12 family protein; Provisional
Probab=57.23 E-value=5.2e+02 Score=36.24 Aligned_cols=58 Identities=22% Similarity=0.185 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1247 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1247 L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
|+.|+..-+.-.++++.||.... ...+.|++-+..|..-...+-+.|.++++.+.+|+
T Consensus 1070 lr~eles~r~l~Ekl~~EL~~eK-------~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll 1127 (1320)
T PLN03188 1070 LRTELDASRALAEKQKHELDTEK-------RCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLL 1127 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554445555666655321 12233333344444444444555555555555554
No 187
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.78 E-value=2.8e+02 Score=32.83 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000624 1139 QTQVSDLRTSLNIINSASEEVRNSIKLKR 1167 (1385)
Q Consensus 1139 ~~~v~~l~~~L~~v~~A~~eLr~S~~L~~ 1167 (1385)
..+...+...|......+.+|+..-.++.
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777888877655554
No 188
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=56.75 E-value=2.5e+02 Score=40.34 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred cCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1227 LGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRN 1306 (1385)
Q Consensus 1227 l~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~ 1306 (1385)
.....||.-|.+. .-.+..+..++..|...+..+..+....++..+.. ......++++|..+...+...
T Consensus 977 ~~~~~Dl~gv~al-qrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Pae----------a~~i~~r~~el~~~w~~l~~~ 1045 (2473)
T KOG0517|consen 977 DRLGNDLAGVMAL-QRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAE----------AQAINARIAELQALWEQLQQR 1045 (2473)
T ss_pred cccCcchHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445566555432 23455666777777777766666655544433210 112234455555555555555
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 000624 1307 ADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1307 ~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ 1341 (1385)
..+...-.+|.- ....|..-+..|..=+.+..
T Consensus 1046 ~~~~~~~l~ea~---~lQ~Fl~dld~f~~Wl~~tq 1077 (2473)
T KOG0517|consen 1046 LQEREERLEEAG---GLQRFLRDLDDFQAWLESTQ 1077 (2473)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 555555555532 23456666666655554443
No 189
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.14 E-value=3.5e+02 Score=37.43 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhCCC
Q 000624 1304 GRNADALAQYFGED 1317 (1385)
Q Consensus 1304 ~~~~~~l~~yFGEd 1317 (1385)
+...+++..++.+.
T Consensus 699 e~~~~e~~~~lsee 712 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEE 712 (1317)
T ss_pred HHHHHHHHHHhccc
Confidence 34455666666654
No 190
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=55.91 E-value=1.6e+02 Score=34.35 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=12.4
Q ss_pred ccCCchhHHHHHHHHHHh
Q 000624 1204 ARNNKMTLMHYLCKVLAE 1221 (1385)
Q Consensus 1204 s~d~k~TLLhyl~k~l~e 1221 (1385)
....+..+++-+|+.+..
T Consensus 120 Pee~~~~IF~Alc~a~g~ 137 (283)
T PLN00047 120 SDEDRDAIFKAYIKALGE 137 (283)
T ss_pred ChHHHHHHHHHHHHHcCC
Confidence 345567788888887654
No 191
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.71 E-value=3.8e+02 Score=35.37 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcccccCCCCCCccceeeccchhhhhcc------c-c-cCCchhHHHHHHHHHHhhCccccCCccccccHH
Q 000624 1166 KRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDT------R-A-RNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLE 1237 (1385)
Q Consensus 1166 ~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dt------K-s-~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~ 1237 (1385)
.++++.+|.+||-++.|. + .+.--++..-..+.+. - + ..+..+.|..+++++.+=...+.+|..+-..+.
T Consensus 176 a~~~~kLl~isnel~~~~-f-~~tka~I~k~~~~lE~~lleeF~~~~R~~n~~~m~~~a~iL~~F~G~v~~y~n~~d~fi 253 (763)
T KOG3745|consen 176 ADRIKKLLLISNELPYGK-F-SETKARIEKKYEVLEQNLLEEFNSAQREENIKKMAEFAKILSEFKGVVRMYLNCVDDFI 253 (763)
T ss_pred HHHHHHHHHHhccCCcch-h-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhcchHHHHHHhHHHHH
Confidence 456677899999999883 1 1111122111111111 0 0 123356677777766553332222322222111
Q ss_pred HHHh-------hh--HHHHHHHHHHHHHhHHHHHHHHhh-ccC--CCCchhhHHHHHHHHHHHHHHH----------HHH
Q 000624 1238 ASTK-------IQ--LKFLAEEMQAISKGLEKVVQELTA-SEN--DGEVSGNFCKLLKEFLSYAEGE----------VRS 1295 (1385)
Q Consensus 1238 ~Ask-------v~--l~~L~~e~~~l~k~L~kl~~el~~-se~--d~~~~d~F~~~l~~Fl~~a~~~----------l~~ 1295 (1385)
++-. ++ +++|-.|+-.+.++-.+..++.-. .+. ..-+.+.|...|+.|+.+.-+. ++.
T Consensus 254 d~~~~~~~~~fi~~~~~di~~D~~~l~~~~sk~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~~~~~l~ylR~ 333 (763)
T KOG3745|consen 254 DSDEFQPEQPFISNILQDIFNDILKLCESESKFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKEGKDFLAYLRD 333 (763)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHhHhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 1101 11 444444444444444433322211 110 0002356777788887766655 456
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000624 1296 LALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1296 L~~~~~~~~~~~~~l~~yF 1314 (1385)
|..+|.++.+..++|..||
T Consensus 334 L~~Lys~~~k~~~~L~~~~ 352 (763)
T KOG3745|consen 334 LYGLYSSTLKLSKDLVDYF 352 (763)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 7788899999999999994
No 192
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.58 E-value=6.6e+02 Score=36.08 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=8.2
Q ss_pred EEEEEecCCCCcc
Q 000624 121 VLLMHCERGGWPV 133 (1385)
Q Consensus 121 VvvvHCk~Gkgr~ 133 (1385)
+.+|.=..|.|.|
T Consensus 30 ~~~I~G~NGaGKT 42 (1311)
T TIGR00606 30 LTILVGPNGAGKT 42 (1311)
T ss_pred eEEEECCCCCCHH
Confidence 4566666677764
No 193
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.34 E-value=2.8e+02 Score=30.93 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHH
Q 000624 1242 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLS 1287 (1385)
Q Consensus 1242 v~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~ 1287 (1385)
.+++.|...+.+|.|....+......... ....|...|.+|-.
T Consensus 9 ~~~~~le~~l~kl~K~~k~~~~agk~~~~---a~~~F~~~L~~f~~ 51 (200)
T cd07639 9 AEVSELETRLEKLVKLGSGMLEGGRHYCA---ASRAFVDGLCDLAH 51 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 36677777777777776665544332211 12467777777654
No 194
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.98 E-value=3.1e+02 Score=37.03 Aligned_cols=204 Identities=19% Similarity=0.240 Sum_probs=110.3
Q ss_pred hcCCCHHHHHHHHh----c-------cCCCCCcchhHHHHHHHhCCCcHHHHH-HHHHHHHHHHhhH----------HHH
Q 000624 1088 KFCPTKEEMEVLKN----Y-------NGDKGNLGKCEQFFLELMKVPRVESKL-RVFSFKIQFQTQV----------SDL 1145 (1385)
Q Consensus 1088 k~~Pt~EE~~~Lk~----y-------~gd~~~L~~~EqFll~L~~Iprl~~RL-~~l~Fk~~f~~~v----------~~l 1145 (1385)
-+|.++++.+.+.+ | -+|...=..+-++|+..+...|-++.| .++.|..+...+. ...
T Consensus 356 lmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqk 435 (1010)
T KOG1991|consen 356 LMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQK 435 (1010)
T ss_pred hcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhh
Confidence 45677777776654 1 134445566777777777666633333 4555655544322 223
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cCCCCCCccceeeccchhhhh--cccccCCchhHHHHHHH
Q 000624 1146 RTSLNIINSASEEVRNSIKLKRIMQTILSLGNAL------NHGTARGSAVGFRLDSLLKLT--DTRARNNKMTLMHYLCK 1217 (1385)
Q Consensus 1146 ~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~L------N~Gt~rg~A~GFkL~sL~KL~--dtKs~d~k~TLLhyl~k 1217 (1385)
..+|..+..-|+-|++..-++..|+..|. |++ |.|.-|..| ...|.+++ |.|+.++-.+.||.+.+
T Consensus 436 dGAL~~vgsl~~~L~K~s~~~~~mE~flv--~hVfP~f~s~~g~Lrara----c~vl~~~~~~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 436 DGALRMVGSLASILLKKSPYKSQMEYFLV--NHVFPEFQSPYGYLRARA----CWVLSQFSSIDFKDPNNLSEALELTHN 509 (1010)
T ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHH--HHhhHhhcCchhHHHHHH----HHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 45788888888888888889999988776 232 223222111 22355555 45566666677887777
Q ss_pred HHHhhCccccCCccccc-cHHHHHhhh--------H-HHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHH
Q 000624 1218 VLAEKLPELLGFPKDLV-SLEASTKIQ--------L-KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLS 1287 (1385)
Q Consensus 1218 ~l~ek~pell~f~~eL~-~l~~Askv~--------l-~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~ 1287 (1385)
.+.+ . ++|. .|++|-.++ . ..+..-+..+-+.|-++.++.+ + |.....|+.|+.
T Consensus 510 ~l~~-d-------~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E---n-----d~Lt~vme~iV~ 573 (1010)
T KOG1991|consen 510 CLLN-D-------NELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE---N-----DDLTNVMEKIVC 573 (1010)
T ss_pred Hhcc-C-------CcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc---h-----hHHHHHHHHHHH
Confidence 7653 1 1221 123222111 1 1123333333344444444432 2 344556777777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000624 1288 YAEGEVRSLA-LLYSSVGRNADALAQY 1313 (1385)
Q Consensus 1288 ~a~~~l~~L~-~~~~~~~~~~~~l~~y 1313 (1385)
...+++.-.. ++...+.+.|-+++.-
T Consensus 574 ~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 574 KFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 6666665543 3445555666666654
No 195
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=54.91 E-value=3.2e+02 Score=29.85 Aligned_cols=48 Identities=6% Similarity=0.103 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 000624 1290 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVV-STLLNFVKMFVLAHE 1342 (1385)
Q Consensus 1290 ~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff-~~l~~Fi~~fkka~e 1342 (1385)
++++++.+..|..+...+..-+.-|... ..+++ ..|..|+......++
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~-----~~~~l~~~l~~~i~~q~~~~~ 215 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAK-----RQDILEPCLQSFIEAQLQYFQ 215 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554433333321 12333 555566555444443
No 196
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=54.81 E-value=4.2e+02 Score=31.25 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
..|...+...|..--.+..++++......-.|+.+..-|..
T Consensus 177 ~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 177 KEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555555554444444554444444445555554543
No 197
>smart00721 BAR BAR domain.
Probab=54.61 E-value=3.5e+02 Score=30.20 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVL 1339 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkk 1339 (1385)
+..++++++..++.|+.+...+..-+..|-.... +.+...|..|+..-..
T Consensus 172 l~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~----~~~~~~l~~~~~aq~~ 221 (239)
T smart00721 172 LAKAEEELRKAKQEFEESNAQLVEELPQLVASRV----DFFVNCLQALIEAQLN 221 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHH
Confidence 4557777777777777766665554444433221 2244455555554333
No 198
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.47 E-value=3.4e+02 Score=35.17 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000624 1286 LSYAEGEVRSLALLYSS 1302 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~ 1302 (1385)
+..++.+++.+......
T Consensus 411 va~lEkKvqa~~kERDa 427 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDA 427 (961)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 34445555444443333
No 199
>PRK01415 hypothetical protein; Validated
Probab=54.39 E-value=41 Score=38.57 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=57.9
Q ss_pred eeccceEEEecCCCCCCcc--hHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCC
Q 000624 18 EISERVFVFDCCFTTDILE--EEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1385)
Q Consensus 18 YIT~RIiam~~~fPa~~~~--e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~ 95 (1385)
=|-..|+.| |.+..... -+.| -.-+++.++|+. + .+.|...++.. +| .+-+++ |+
T Consensus 91 r~k~eiV~~--g~~~~~~~~~~g~~-i~p~e~~~ll~~---~-~~vvIDVRn~~----------E~--~~Ghi~----gA 147 (247)
T PRK01415 91 RLKKEIVAM--NVDDLNVDLFKGEY-IEPKDWDEFITK---Q-DVIVIDTRNDY----------EV--EVGTFK----SA 147 (247)
T ss_pred EeeceEEec--CCCCCCccccCccc-cCHHHHHHHHhC---C-CcEEEECCCHH----------HH--hcCCcC----CC
Confidence 356678888 66543221 1222 333456677763 3 37888887742 11 122222 33
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 96 P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
-.+++..+-.|...++.++..+.+.-++|+|.+|. | +..+|++|.-.|
T Consensus 148 inip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-R--s~kAa~~L~~~G 195 (247)
T PRK01415 148 INPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGI-R--CEKSTSLLKSIG 195 (247)
T ss_pred CCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCCh-H--HHHHHHHHHHcC
Confidence 22366666555554545555566677999996553 5 667777776554
No 200
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=54.30 E-value=1.9e+02 Score=33.12 Aligned_cols=48 Identities=31% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhc
Q 000624 1330 LLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQN 1377 (1385)
Q Consensus 1330 l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~ 1377 (1385)
|..|...-..++++.++|.+.|+.+++..+.++-.+.-+.+-+++.++
T Consensus 379 llkf~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~a 426 (445)
T KOG2891|consen 379 LLKFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLA 426 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555677777888888877766554444333333333444433
No 201
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=54.18 E-value=2.5e+02 Score=30.31 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHhhc
Q 000624 1249 EEMQAISKGLEKVVQELTAS 1268 (1385)
Q Consensus 1249 ~e~~~l~k~L~kl~~el~~s 1268 (1385)
.+++++++.|..++.|+...
T Consensus 28 ~~L~~l~~~L~~L~~EI~y~ 47 (170)
T PF09548_consen 28 RQLRELRRALQLLETEIRYG 47 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 35566666777777777654
No 202
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=54.06 E-value=92 Score=31.35 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=50.0
Q ss_pred CcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEccccc-ccCCE
Q 000624 199 DRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQGDV 276 (1385)
Q Consensus 199 ~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~-v~GDV 276 (1385)
...|.++=|.-++++..+ .+.|.||++||-.... .......|....+... .|. +.|.|++.-. +.--+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~-----~~~~~~kT~v~~~t~~P~~n----E~F~f~v~~~~~~~~l 80 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDK-----EVRFRQKTSTVPDSANPLFH----ETFSFDVNERDYQKRL 80 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCC-----CCcceEeCccccCCCCCccc----cEEEEEcChHHhCCEE
Confidence 356888888888888887 6789999999965311 1111222322111111 221 2366654221 22235
Q ss_pred EEEEEecCCcccccceEEEEEeecccc
Q 000624 277 VLECISLDSDQEREEMMFRVMFNTAFI 303 (1385)
Q Consensus 277 ~i~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1385)
+|.+++.+....++..|-++.|.-.=+
T Consensus 81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 81 LVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred EEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 566666653222345666666655433
No 203
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.63 E-value=6.3e+02 Score=32.94 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~ 1347 (1385)
+.....+++++......-++.+++|..-|---++..+......-|.+++..++|-.+|..|-
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KI 510 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKI 510 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555555555555544444555666778888999999999988887763
No 204
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=53.23 E-value=94 Score=32.11 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=49.7
Q ss_pred cceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEE
Q 000624 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLE 279 (1385)
Q Consensus 200 ~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~ 279 (1385)
..|.+.-+.-++++..+..+.|.||++|+-+. ..+.|....+...-...+ .+.|.+.-.....+.|+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~----------~~~kT~vi~~t~nP~Wne---~f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS----------QEHKTKVVSDTLNPKWNS---SMQFFVKDLEQDVLCIT 81 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EeeeccccCCCCCCccCc---eEEEEecCccCCEEEEE
Confidence 34666666667788777667899999998753 234443322222222222 24444322223457788
Q ss_pred EEecCCcccccceEEEEEeecc
Q 000624 280 CISLDSDQEREEMMFRVMFNTA 301 (1385)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~ 301 (1385)
||+.+. ......|.++.|.-.
T Consensus 82 V~D~d~-~~~d~~lG~~~i~l~ 102 (136)
T cd08375 82 VFDRDF-FSPDDFLGRTEIRVA 102 (136)
T ss_pred EEECCC-CCCCCeeEEEEEEHH
Confidence 998763 334556777776543
No 205
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=53.20 E-value=38 Score=34.44 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=27.5
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
.....|+++=|.-++++..+..+.|.||++|+-.
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~ 43 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLK 43 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEE
Confidence 3456788888888889888877889999999864
No 206
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.18 E-value=7.9e+02 Score=33.91 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=8.7
Q ss_pred HHHHHHHhhccCcCC
Q 000624 363 FAKVQEIFSNVDWLD 377 (1385)
Q Consensus 363 ~~~~~~~~~~~~~~~ 377 (1385)
-+.|++||+..+..+
T Consensus 165 PRal~~IFd~Le~~~ 179 (1041)
T KOG0243|consen 165 PRALRQIFDTLEAQG 179 (1041)
T ss_pred hHHHHHHHHHHHhcC
Confidence 455666666655544
No 207
>PRK13266 Thf1-like protein; Reviewed
Probab=53.15 E-value=45 Score=37.59 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1275 SGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1275 ~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
+..|.-=|-..++.+...+. ..-++..+...+++..+|-..
T Consensus 141 SRl~AIGL~~LLe~a~~~~~---~d~~~~~~~l~~l~~~L~ls~ 181 (225)
T PRK13266 141 SRLFAIGLYTLLEEAQPDLV---KDEEKLNEALKDISEGLGLSK 181 (225)
T ss_pred HHHHHHHHHHHHHhcCcccc---cCHHHHHHHHHHHHHHcCCCH
Confidence 34444445555665554221 222234455677777777754
No 208
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=53.01 E-value=19 Score=34.80 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 100 METVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 100 L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
++.+..+...+..++..+.+.-+||||..|. |+ ...|.+|...|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~-rs--~~a~~~L~~~G 85 (101)
T cd01518 42 VDTFREFPFWLDENLDLLKGKKVLMYCTGGI-RC--EKASAYLKERG 85 (101)
T ss_pred cccHhHhHHHHHhhhhhcCCCEEEEECCCch-hH--HHHHHHHHHhC
Confidence 3334344444444454466677999997664 53 34455554433
No 209
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=52.90 E-value=39 Score=37.55 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 000624 1335 KMFVLAHEENC 1345 (1385)
Q Consensus 1335 ~~fkka~een~ 1345 (1385)
+.|.|+.+|.+
T Consensus 111 K~FdK~~kDye 121 (215)
T cd07641 111 KPFDKAWKDYE 121 (215)
T ss_pred hHHHHHHHHHH
Confidence 34555555543
No 210
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=52.83 E-value=1.3e+02 Score=27.15 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.2
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcc-eeeecccCceeEEEcccccccCCEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKL-VRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~-~~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
|.++-+..++++..+..+.+.||++|+..+.. ...+.|...... .-.|. ..+.|.+...-..+|.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~----e~~~~~~~~~~~~~l~~~V 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKNTSNPVWN----EEFEFPLDDPDLDSLSFEV 69 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSSBSSEEEE----EEEEEEESHGCGTEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeeccccceee----eeeeeeeecccccceEEEE
Confidence 45566667778877766789999999987521 133444422211 12232 2355655444555699999
Q ss_pred EecCC
Q 000624 281 ISLDS 285 (1385)
Q Consensus 281 ~h~~~ 285 (1385)
++.+.
T Consensus 70 ~~~~~ 74 (85)
T PF00168_consen 70 WDKDS 74 (85)
T ss_dssp EEETS
T ss_pred EECCC
Confidence 98874
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.75 E-value=2.8e+02 Score=29.74 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP 1322 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~ 1322 (1385)
++..|.+++.++.+.+..++.++........ .+++...+.+|++..+.++.....+.. |. ..++
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t------------~~el~~~i~~l~~e~~~l~~kL~~l~~--~~--~~vs 143 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPT------------NEELREEIEELEEEIEELEEKLEKLRS--GS--KPVS 143 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHh--CC--CCCC
Confidence 4666777777777777777777765443321 123344455555555555555555544 22 2244
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1323 FEQVVSTLLNFVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1323 ~eeff~~l~~Fi~~fkka~een~k~ 1347 (1385)
.++ +......|++.+++-.+|
T Consensus 144 ~ee----~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 144 PEE----KEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHH----HHHHHHHHHHHHHHHHHH
Confidence 443 333445555555444443
No 212
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=52.70 E-value=2.5e+02 Score=37.72 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1121 KVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1121 ~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
+.+++++.+. .|.+.+..+...++.+..++..+-++
T Consensus 15 dsp~fr~~~~------~~ee~~~~~~~~l~k~~~~~~~~~~~ 50 (785)
T KOG0521|consen 15 DSPQFRSTLD------VFEEDAGTLEKYLNKLLKAMTRKYDA 50 (785)
T ss_pred cChhHHHHHH------HHHHHHHhhhhhHHHHHHHHHhhhcc
Confidence 5666666554 45556666666677777766666543
No 213
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=52.67 E-value=2.1e+02 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=22.6
Q ss_pred cccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 000624 1231 KDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQE 1264 (1385)
Q Consensus 1231 ~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~e 1264 (1385)
-+|..+++.-++-++.+...++.++..|+.+..+
T Consensus 101 lel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasd 134 (338)
T KOG3647|consen 101 LELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASD 134 (338)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3566666666667777777777777777766543
No 214
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=52.25 E-value=5.4e+02 Score=31.71 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1292 EVRSLALLYSSVGRNADALAQ---YFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1292 ~l~~L~~~~~~~~~~~~~l~~---yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
.+..|+.+|....+.+..... -|--|. ...+++|..+.+=+.+
T Consensus 416 ~ivDlenmy~~~r~~~~~~~~~~qis~~d~--~~vdei~~~~~Ek~eE 461 (590)
T COG5104 416 FIVDLENMYGFARRSYERETRTGQISPTDR--RAVDEIFEAIAEKKEE 461 (590)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccCCCccc--cchHHHHHHHHHHHhh
Confidence 356677777766666654432 232332 2356777776665543
No 215
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.14 E-value=3.9e+02 Score=31.94 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=7.4
Q ss_pred HHHHHHHh-CCCcHH
Q 000624 1113 EQFFLELM-KVPRVE 1126 (1385)
Q Consensus 1113 EqFll~L~-~Iprl~ 1126 (1385)
++++.++. .+|.++
T Consensus 57 ~~~~~A~~~~~P~Le 71 (325)
T PF08317_consen 57 EDYVVAGYCTVPMLE 71 (325)
T ss_pred HHHHHHhccCChHHH
Confidence 34444443 677664
No 216
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=52.12 E-value=2.5e+02 Score=31.49 Aligned_cols=46 Identities=4% Similarity=0.020 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1293 VRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1346 (1385)
Q Consensus 1293 l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k 1346 (1385)
+.++...++.++.....+...|-+ +|..-|...++.+++...+..|
T Consensus 60 L~~~s~~~r~i~~~~~~~~~~~~~--------~li~pLe~~~e~d~k~i~~~~K 105 (219)
T PF08397_consen 60 LMQISEVHRRIENELEEVFKAFHS--------ELIQPLEKKLEEDKKYITQLEK 105 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444455445555444443 2333344444444444444433
No 217
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=52.09 E-value=3e+02 Score=28.99 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 000624 1251 MQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTL 1330 (1385)
Q Consensus 1251 ~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l 1330 (1385)
+.+-.+.|..+..+|+...+ ....=+..++.-++.+..+++-|...+.+-++.|++.+.-|.|.... -..+.+.|
T Consensus 61 veEetkrLa~ireeLE~l~d---P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke--K~~Lv~~L 135 (159)
T PF04949_consen 61 VEEETKRLAEIREELEVLAD---PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE--KAQLVTRL 135 (159)
T ss_pred HHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 34445566666666664321 23455678889999999999999999999999999999999985432 24567777
Q ss_pred HHHHHHHHHHH
Q 000624 1331 LNFVKMFVLAH 1341 (1385)
Q Consensus 1331 ~~Fi~~fkka~ 1341 (1385)
.+.+..+.+.+
T Consensus 136 ~eLv~eSE~~r 146 (159)
T PF04949_consen 136 MELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 218
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=51.96 E-value=1.1e+02 Score=36.11 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=24.2
Q ss_pred hcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCCCcH
Q 000624 1088 KFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRV 1125 (1385)
Q Consensus 1088 k~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~Iprl 1125 (1385)
..-||+||.+...... +.|..+++++..|-.....
T Consensus 9 na~Pt~~E~ev~~~v~---~VL~~~~~iL~~L~~Yrga 43 (303)
T PF07159_consen 9 NAQPTEEEREVYNEVN---EVLEEGEQILQDLYTYRGA 43 (303)
T ss_pred CCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccCc
Confidence 4468888888776642 4577788888877665443
No 219
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=51.78 E-value=4.5e+02 Score=35.16 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Q 000624 1135 KIQFQTQVSDLRTSLNIINSASEEV-RNSIKLKRIMQTILSL 1175 (1385)
Q Consensus 1135 k~~f~~~v~~l~~~L~~v~~A~~eL-r~S~~L~~lL~~IL~l 1175 (1385)
..+|..++.++...++......++- .+.+.|+.-+..+++.
T Consensus 360 ~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~ 401 (980)
T KOG0980|consen 360 IEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLAS 401 (980)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555555444433 3345677766666654
No 220
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=51.76 E-value=49 Score=32.97 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=26.0
Q ss_pred CCcceEEeEEEEeeccccC-CCCcceeEEEEEec
Q 000624 198 LDRALTLDCVILRVIPNFD-GEGGCCPIFRIYGQ 230 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~-~~~gcrP~~~Iy~~ 230 (1385)
....|.+.-|.-++++..+ ..+.|.||++||..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~ 45 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEe
Confidence 4466888888888898877 46779999999963
No 221
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=51.66 E-value=3.2e+02 Score=32.57 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCCChhHHHHhHhccCCCCCCHHHH-hhhhhcCCCHHH
Q 000624 1059 VKIPLPDLMGSVLALDDSALDIDQV-DNLIKFCPTKEE 1095 (1385)
Q Consensus 1059 lkl~~~ei~~aIl~lD~~~L~~e~l-e~Llk~~Pt~EE 1095 (1385)
-|.+.+++...|.+.+...+....+ ..|..++=..+.
T Consensus 15 ~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~ 52 (335)
T PF08429_consen 15 PKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAES 52 (335)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3455666666666666555554444 777766644433
No 222
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=51.65 E-value=3.1e+02 Score=29.90 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000624 1326 VVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1326 ff~~l~~Fi~~fkka~ 1341 (1385)
|+.-|.+|+..|+.+.
T Consensus 119 vi~pl~~~~~~~~~i~ 134 (229)
T PF03114_consen 119 VIDPLKEFLKEFKEIK 134 (229)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4444455554444443
No 223
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=51.60 E-value=2.4e+02 Score=37.48 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHHHhhc----------cCCC---------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1249 EEMQAISKGLEKVVQELTAS----------ENDG---------EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1249 ~e~~~l~k~L~kl~~el~~s----------e~d~---------~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
+|+++|.+.|+.+++.+-.. ++.. .....+....+.|-+-++..|..+.++++.+.+.+..
T Consensus 161 ~d~~~le~NL~~a~~NM~~~~~l~l~~~~~~N~~LVn~~NKLvYLGrli~av~~SW~~Le~kcl~rI~el~~~L~~elr~ 240 (839)
T PF06070_consen 161 EDVQELEENLRAARSNMFWYTPLKLNLDRHENGPLVNAINKLVYLGRLIVAVSTSWEELEEKCLSRINELCKRLVKELRR 240 (839)
T ss_pred HHHHHHHHHHHHHHhccEEEEeeecccccccCccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777776554331 1110 0124567777888888888888888877777777665
Q ss_pred HHHH---hCCC----C-CCCChHHHHHHHHHHHHHHHHH
Q 000624 1310 LAQY---FGED----P-ARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1310 l~~y---FGEd----p-~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
...| ||-+ + .....+.|+.+|.+=...|+.+
T Consensus 241 ~~~F~~~Y~~niLk~~Vdg~s~~~lL~~L~EDf~Iye~a 279 (839)
T PF06070_consen 241 NRSFESNYCRNILKHPVDGESVDSLLEMLTEDFEIYEDA 279 (839)
T ss_pred CCcHHHHHHHHHHhCcCCcccHHHHHHHHHHHHHHHHhh
Confidence 4222 2211 1 1224567888888877777777
No 224
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=51.56 E-value=2.2e+02 Score=37.10 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1324 EQVVSTLLNFVKMFVLAHEENCRQLEFE 1351 (1385)
Q Consensus 1324 eeff~~l~~Fi~~fkka~een~k~~e~E 1351 (1385)
..+..-+..|.+.+++...|.+|++|+|
T Consensus 406 kr~~Rem~~fwKk~er~~rd~rKK~EkE 433 (1185)
T KOG0388|consen 406 KRIYREMYGFWKKNERNMRDLRKKAEKE 433 (1185)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566677788888888877777655543
No 225
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=51.48 E-value=4.1e+02 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+++..-+..+...+...++.|....+.++.+...|-+
T Consensus 153 eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~ 189 (236)
T cd07651 153 EKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNR 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777777777666555544
No 226
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.42 E-value=5.7e+02 Score=31.73 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 000624 1136 IQFQTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1136 ~~f~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
.++...+.+++..+..+..++.+.
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544443
No 227
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.64 E-value=1.6e+02 Score=30.86 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1295 SLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQL 1348 (1385)
Q Consensus 1295 ~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~ 1348 (1385)
.|+....++++.-..++.-|.+.. ..+.+|++.|+..+.....|+
T Consensus 100 ~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 100 RLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666665531 247889999998887766544
No 228
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=50.56 E-value=1.7e+02 Score=35.07 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=42.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Q 000624 1271 DGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVK 1335 (1385)
Q Consensus 1271 d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~ 1335 (1385)
|..++..-.++|++-++.++.+++.-++.|+++...+.+..--|.|| ++++|....+|-.
T Consensus 171 DsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~-----MeqvFe~CQ~fE~ 230 (472)
T KOG2856|consen 171 DSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMED-----MEQVFEQCQQFEE 230 (472)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHHHHH
Confidence 44455667788888899999999888888888766666655556664 5666666555543
No 229
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.54 E-value=4.3e+02 Score=34.10 Aligned_cols=244 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhC-CCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000624 1081 DQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMK-VPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1081 e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~-Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
++++.|..+.-..+..+.++. -...+....+=+.++.. .-..+.+++.+.|..+=.+.++--..-.+.+..-.+.|
T Consensus 145 ~~~~lLD~~~~~~~~~~~~~~---~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 145 EQRQLLDTFAGANEKVKAYRE---LYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHhcCchHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHhcccccCCCCCC-ccceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHH
Q 000624 1160 RNSIKLKRIMQTILSLGNALNHGTARG-SAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEA 1238 (1385)
Q Consensus 1160 r~S~~L~~lL~~IL~lGN~LN~Gt~rg-~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~ 1238 (1385)
.+..++...++.++.+= -+.....+ ++..-=-..+..|..+ .|.. +.-+.+.+.+-.-++.+...+|.....
T Consensus 222 ~n~e~i~~~~~~~~~~L--~~~~~~~~~~~~~~l~~~~~~l~~~--~d~~---~~~~~~~l~~~~~~l~d~~~~l~~~~~ 294 (563)
T TIGR00634 222 SNLEKLRELSQNALAAL--RGDVDVQEGSLLEGLGEAQLALASV--IDGS---LRELAEQVGNALTEVEEATRELQNYLD 294 (563)
T ss_pred hCHHHHHHHHHHHHHHH--hCCccccccCHHHHHHHHHHHHHHh--hhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1239 STKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1239 Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
.-..| -+.+.++...|..+.+...+...+ .+.+..|++.++.++..+...-..+++.-+++
T Consensus 295 ~l~~d----p~~L~ele~RL~~l~~LkrKyg~s-------~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el-------- 355 (563)
T TIGR00634 295 ELEFD----PERLNEIEERLAQIKRLKRKYGAS-------VEEVLEYAEKIKEELDQLDDSDESLEALEEEV-------- 355 (563)
T ss_pred hCCCC----HHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--------
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1319 ARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKA 1358 (1385)
Q Consensus 1319 ~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~ke 1358 (1385)
++....+........+.+++..++.+.+-.+..+.
T Consensus 356 -----~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 356 -----DKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 230
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.50 E-value=2.3e+02 Score=36.24 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=6.9
Q ss_pred CCCCCCccceeecc
Q 000624 1181 HGTARGSAVGFRLD 1194 (1385)
Q Consensus 1181 ~Gt~rg~A~GFkL~ 1194 (1385)
.|.-+|...-|.+.
T Consensus 98 ~g~V~G~S~pFqf~ 111 (546)
T PF07888_consen 98 KGEVRGASTPFQFR 111 (546)
T ss_pred CccEEEecCCcccC
Confidence 34455555555543
No 231
>PRK02224 chromosome segregation protein; Provisional
Probab=50.32 E-value=3e+02 Score=37.55 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLAL 1298 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~ 1298 (1385)
..+..-+..+..++..++.
T Consensus 415 ~~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 415 EELREERDELREREAELEA 433 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 232
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=50.14 E-value=77 Score=32.10 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCcceEEeEEEEeeccccCCC-CcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-cccC
Q 000624 198 LDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG 274 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-~v~G 274 (1385)
....|.++-|.-++++..+.. ++|.||++||-.... ...-.+.|....+.+. .|. +.+.|++.. .+.+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~~n----E~f~f~v~~~~l~~ 83 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK-----SNRGKRKTSVKKKTLNPVFN----ETLRYKVEREELPT 83 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC-----CccccccCccCcCCCCCccC----ceEEEECCHHHhCC
Confidence 446788888889999988865 789999999874211 0001122221111111 221 235565432 2443
Q ss_pred -CEEEEEEecCCcccccceEEEEEeeccccc
Q 000624 275 -DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 275 -DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
.+.|.|++.+. ..+...|.++.|.-+.+.
T Consensus 84 ~~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 84 RVLNLSVWHRDS-LGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred CEEEEEEEeCCC-CCCCcEeEEEEEecCccc
Confidence 46678888653 344556666666655543
No 233
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=50.01 E-value=55 Score=38.83 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhh
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTA 1267 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~ 1267 (1385)
+++.|...|++|.+-|+.++..+..
T Consensus 266 Sveqiq~kmqeln~~le~~r~sfdg 290 (503)
T PF03249_consen 266 SVEQIQNKMQELNDILEELRESFDG 290 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4667888999999888888776643
No 234
>PRK10404 hypothetical protein; Provisional
Probab=50.00 E-value=90 Score=30.89 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCC
Q 000624 1245 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS-SVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1245 ~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~-~~~~~~~~l~~yFGEdp 1318 (1385)
+.|.+||+.|...++.+-...... .+...+..+..+...+..+..++..+...+. +.......+-.|-.|+|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~--a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDP--ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456677777777777765443322 1122367788888888888888887776433 36666777888888876
No 235
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=49.85 E-value=1.2e+02 Score=34.13 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
++.+++..+..|.+-.+....++.-+-+... +-+..|.+|+..
T Consensus 159 ae~elr~A~~kf~~~~E~a~~~M~~il~~~~-----e~l~~L~~lv~A 201 (220)
T cd07617 159 AEHELRVAQTEFDRQAEVTRLLLEGISSTHV-----NHLRCLHEFVEA 201 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHH
Confidence 4566777777776666666665665555421 234556666655
No 236
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=49.84 E-value=1.4e+02 Score=34.25 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=19.3
Q ss_pred HHHHHHhcccccCCCCCCccceeeccchhhhhcccc
Q 000624 1169 MQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRA 1204 (1385)
Q Consensus 1169 L~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs 1204 (1385)
=++++..|+-|..++..|.+..--=+.+.+|.+.+.
T Consensus 63 gq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~ 98 (246)
T cd07618 63 AQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELS 98 (246)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777776544332211134555555543
No 237
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.67 E-value=3.2e+02 Score=30.82 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCc----hhhHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEV----SGNFCKLLKEF-----------------LSYAEGEVRSLALLYSS 1302 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~----~d~F~~~l~~F-----------------l~~a~~~l~~L~~~~~~ 1302 (1385)
+..+++++.+|.+.++++.+.....-+.+.. ...|...+.+| +......+++|.+.+..
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~ 83 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHST 83 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhcc
Q 000624 1303 VGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNP 1378 (1385)
Q Consensus 1303 ~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~~ 1378 (1385)
+......+ +..-|.+|++.--+..+|.+|+-+++-..-+...+|--.-..+.+.+...+.+
T Consensus 84 L~~q~~~~---------------l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea 144 (215)
T cd07601 84 LSSQLADT---------------VLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEV 144 (215)
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHH
No 238
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.65 E-value=2.8e+02 Score=33.91 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=10.5
Q ss_pred CCChhHHHHhHhccCCC
Q 000624 1060 KIPLPDLMGSVLALDDS 1076 (1385)
Q Consensus 1060 kl~~~ei~~aIl~lD~~ 1076 (1385)
|+.++.|...=..||++
T Consensus 64 klg~EAir~iHrqmDDD 80 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDD 80 (575)
T ss_pred hhhHHHHHHHHHhcccc
Confidence 34566666666667765
No 239
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=49.57 E-value=1.1e+02 Score=33.08 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHH
Q 000624 1239 STKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEV 1293 (1385)
Q Consensus 1239 Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l 1293 (1385)
+.+.++..+.+++..|.+.+.++-..|+... ...|...+.+..-+..-.+.+
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~---~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILELLEGQQ---KTQDELKETIQKQIKTQGEQL 162 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHhhhHHHH
Confidence 4467888888888888888888776665432 223566666665555444433
No 240
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=49.56 E-value=1.7e+02 Score=36.84 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCC------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1287 SYAEGEVRSLALLYSSVGRNADALAQY-FGEDPA------RCPFEQVVSTLLNFVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1287 ~~a~~~l~~L~~~~~~~~~~~~~l~~y-FGEdp~------~~~~eeff~~l~~Fi~~fkka~een~k~ 1347 (1385)
..+++++..|++..+++...|+.|+.- |.+... ...++.++.=|.+=+..|++.+++..+.
T Consensus 95 ~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 95 QHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555332 222111 1234556666677777777777766543
No 241
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.48 E-value=71 Score=34.21 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCK--LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~--~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
....+..++++.+.++++|+..-... |+|.+ +++.-++.++++++++++........++....++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~q----DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQ----DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TT----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777787777653322 56665 4566666667777766666666555555555443
No 242
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=49.31 E-value=35 Score=34.20 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=27.1
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
+....|.+.-+.-++++..+..+.|.||++|+..
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~ 46 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC
Confidence 3456688888888888887777889999999873
No 243
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=49.11 E-value=1.3e+02 Score=33.69 Aligned_cols=132 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q 000624 1241 KIQLKFLAEEMQAISKGLEKVVQELTASENDGEV----SGNFCKLLKEFLSYA------------EGEVRSLALLYSSVG 1304 (1385)
Q Consensus 1241 kv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~----~d~F~~~l~~Fl~~a------------~~~l~~L~~~~~~~~ 1304 (1385)
+-++...+.++....+.|+++.+......+.+.. ...|...+.+|-..+ ..-++++.+.+.++.
T Consensus 1 r~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~ 80 (207)
T cd07635 1 RERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLE 80 (207)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhccCcchhhhhcc
Q 000624 1305 RNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVEN------EKLKTQKGQSEHLVQNP 1378 (1385)
Q Consensus 1305 ~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~------ek~~~~k~~~~~~~~~~ 1378 (1385)
+....|+.--.. .+..-|.+|++.--+...|.+|+-+++-.+-....+| .|.+.+..|.++.+.+.
T Consensus 81 d~r~~L~~~~~~--------~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~ 152 (207)
T cd07635 81 EQREIMALNVTE--------TLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQN 152 (207)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHH
Q ss_pred cc
Q 000624 1379 LK 1380 (1385)
Q Consensus 1379 lk 1380 (1385)
.+
T Consensus 153 r~ 154 (207)
T cd07635 153 RQ 154 (207)
T ss_pred HH
No 244
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=48.68 E-value=1.3e+02 Score=39.02 Aligned_cols=49 Identities=22% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLN 1332 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~ 1332 (1385)
-.++|+.-|.+-++.|+.--+++.+...+ -||.-.+...+.+++.+|.+
T Consensus 919 ~aREWMRIcfeLlelLkahkK~iRRaa~n---TfG~IakaIGPqdVLatLln 967 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAHKKEIRRAAVN---TFGYIAKAIGPQDVLATLLN 967 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHhcCHHHHHHHHHh
Confidence 45788888877777777666555554443 45554445556666655443
No 245
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=5e+02 Score=30.21 Aligned_cols=6 Identities=33% Similarity=0.844 Sum_probs=2.6
Q ss_pred hHHHHH
Q 000624 1323 FEQVVS 1328 (1385)
Q Consensus 1323 ~eeff~ 1328 (1385)
|.||.+
T Consensus 129 fsD~Is 134 (265)
T COG3883 129 FSDLIS 134 (265)
T ss_pred HHHHHH
Confidence 444443
No 246
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=48.27 E-value=89 Score=32.10 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-cc
Q 000624 195 WPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HI 272 (1385)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-~v 272 (1385)
+.+....|.++-|.-++++..+..+.|.||++|+-.... +.. ..+.|....+... .|. +.+.|++.. .+
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~----~~~-~~~kT~v~~~t~nP~wn----E~F~f~i~~~~l 79 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGL----KLI-KTKKTSCMRGTIDPFYN----ESFSFKVPQEEL 79 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCC----ccc-ceEcCccccCCCCCccc----eeEEEeCCHHHh
Confidence 334556788888888888888777789999999853210 000 0112211111111 121 235565422 23
Q ss_pred cCC-EEEEEEecCCcccccceEEEEEeeccccc
Q 000624 273 QGD-VVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 273 ~GD-V~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
... +.|.||+.+. ..+...|.++.|....+.
T Consensus 80 ~~~~l~~~V~d~d~-~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 80 ENVSLVFTVYGHNV-KSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCEEEEEEEeCCC-CCCCcEEEEEEEcCccCC
Confidence 322 6678888653 345677888887765443
No 247
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=48.22 E-value=3.9e+02 Score=32.62 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNA-DALAQYFGED 1317 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~-~~l~~yFGEd 1317 (1385)
..++..++..+.+|..|+..+..+++.+ .++++|-.|.
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999998887 5677777764
No 248
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=48.16 E-value=2.3e+02 Score=34.17 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCchhHHHHHHHHHHhhCccccCCccccccHHH
Q 000624 1206 NNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEA 1238 (1385)
Q Consensus 1206 d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~ 1238 (1385)
.++++||+-|...+-+. ++..|.+++..+++
T Consensus 91 fG~~sLlQrifs~~L~~--d~~~~~k~i~~le~ 121 (341)
T PF12825_consen 91 FGGRSLLQRIFSMVLND--DIKEFEKEIDKLEK 121 (341)
T ss_pred CCcCcHHHHHHHHHHhh--hHHHHHHHHHHHHH
Confidence 44779999888776542 33445555555543
No 249
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.94 E-value=5.2e+02 Score=35.93 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.1
Q ss_pred hhccccccc
Q 000624 383 AVNMLQHFT 391 (1385)
Q Consensus 383 ~~~~~~~~~ 391 (1385)
|++.++++.
T Consensus 187 AldslH~mg 195 (1317)
T KOG0612|consen 187 ALDSLHSMG 195 (1317)
T ss_pred HHHHHHhcc
Confidence 344444443
No 250
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.86 E-value=1.1e+02 Score=41.21 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLL---KEFLSYAEGEVRSLALLYSSVGR-NADALAQYFG 1315 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l---~~Fl~~a~~~l~~L~~~~~~~~~-~~~~l~~yFG 1315 (1385)
.+..+..++..+++.|+..++|+...++.. +.|...+ ..-++..+..+++|+....++++ .|+.+|.-.|
T Consensus 691 ~~~~~~~~~~~~k~~l~~~~~El~~~~~~i---~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig 764 (1141)
T KOG0018|consen 691 RLKYSKLDLEQLKRSLEQNELELQRTESEI---DEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG 764 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 344455666666777776666666554332 2333332 23444555555555555444443 2444444444
No 251
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.50 E-value=4.6e+02 Score=32.80 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000624 1077 ALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQ 1139 (1385)
Q Consensus 1077 ~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~Iprl~~RL~~l~Fk~~f~ 1139 (1385)
.++...+.+|.+++-..||. +..+-|-+++++.-.+.+.|+-+|....+|.
T Consensus 22 ~~~p~~~k~lkkiv~~sdee------------~~~~~~~L~~~~~~~h~~vR~l~lqii~elF 72 (661)
T KOG2374|consen 22 EVDPRLLKALKKIVRYSDEE------------VRLSSQTLMELMRHNHSQVRYLTLQIIDELF 72 (661)
T ss_pred ccChHHHHHHHHHHhccHHH------------HHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 46777788888777654432 3345667777777777776766555444443
No 252
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.26 E-value=4.9e+02 Score=29.76 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1241 KIQLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1241 kv~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
.-+|+.|.....++.....++..|+
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555444444444444444443
No 253
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.26 E-value=2.5e+02 Score=35.86 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHhhhHHHHHHHHHHHHHhHHHH
Q 000624 1238 ASTKIQLKFLAEEMQAISKGLEKV 1261 (1385)
Q Consensus 1238 ~Askv~l~~L~~e~~~l~k~L~kl 1261 (1385)
.+.++.+..+.++++.++..|+.+
T Consensus 112 a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 112 AVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777666
No 254
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=47.15 E-value=1e+02 Score=30.79 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=52.9
Q ss_pred CCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-cccC-
Q 000624 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQG- 274 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-~v~G- 274 (1385)
....|.+.-+.-++++..+..+.|.||++|+.... .+.++.|....+... .|. +.+.|.+.. .+.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-------~~~~~kT~v~~~t~~P~wn----e~f~f~v~~~~l~~~ 82 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-------RSNTKQSKIHKKTLNPEFD----ESFVFEVPPQELPKR 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-------CCCcEeCceEcCCCCCCcc----cEEEEeCCHHHhCCC
Confidence 34567888888888988777788999999997311 011333332111111 121 235554422 1333
Q ss_pred CEEEEEEecCCcccccceEEEEEeeccccc
Q 000624 275 DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
-+.|+|++.+. ..++..|.++.|..+-+.
T Consensus 83 ~l~i~V~d~~~-~~~~~~iG~~~i~l~~~~ 111 (124)
T cd08387 83 TLEVLLYDFDQ-FSRDECIGVVELPLAEVD 111 (124)
T ss_pred EEEEEEEECCC-CCCCceeEEEEEeccccc
Confidence 46677777653 334556666666665554
No 255
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.05 E-value=1.4e+02 Score=38.67 Aligned_cols=7 Identities=29% Similarity=0.895 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 000624 1308 DALAQYF 1314 (1385)
Q Consensus 1308 ~~l~~yF 1314 (1385)
+.+.+||
T Consensus 75 ~~~~k~~ 81 (611)
T KOG2398|consen 75 KDVAKYY 81 (611)
T ss_pred HHHHHHH
Confidence 3333333
No 256
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=46.70 E-value=5.1e+02 Score=34.30 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCCC-----CChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYS---SVGRNADALAQYFGEDPAR-----CPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~---~~~~~~~~l~~yFGEdp~~-----~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
..|-..|+.|++.+..--.++-+.+. ++++.+.+++.-.+||..+ +.+-++=+++.+|+..+.+...+..
T Consensus 455 ~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l 532 (677)
T PF05664_consen 455 SCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERL 532 (677)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888876543333333333 3334444444334555433 2334566777888888876665543
No 257
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.56 E-value=3.8e+02 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=8.3
Q ss_pred hHHHHHH-HhCCCcHH
Q 000624 1112 CEQFFLE-LMKVPRVE 1126 (1385)
Q Consensus 1112 ~EqFll~-L~~Iprl~ 1126 (1385)
-++|+.+ .+.||.++
T Consensus 51 l~~~v~A~~~~iP~LE 66 (312)
T smart00787 51 LDQYVVAGYCTVPLLE 66 (312)
T ss_pred HHHHHHHhcCCCcHHH
Confidence 4455554 45666664
No 258
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=46.45 E-value=79 Score=32.23 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEccccc-ccC
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-IQG 274 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~-v~G 274 (1385)
+....|.+.-+.-++++..+..+.|.||++|+-.... .....+.|....+... .|. ..+.|.+... +..
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~-----~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~~~~ 81 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEG-----RRLKKKKTSVKKNTLNPTYN----EALVFDVPPENVDN 81 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCC-----cccceecCCcccCCCCCccc----ceEEEECCHHHhCC
Confidence 3446688888888889988877889999999853210 0001122221111111 121 2244544221 222
Q ss_pred -CEEEEEEecCCcccccceEEEEEeecc
Q 000624 275 -DVVLECISLDSDQEREEMMFRVMFNTA 301 (1385)
Q Consensus 275 -DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1385)
.+.|+|++.+. .+..+.|.++.|...
T Consensus 82 ~~l~~~v~d~~~-~~~~~~IG~~~l~~~ 108 (134)
T cd08403 82 VSLIIAVVDYDR-VGHNELIGVCRVGPN 108 (134)
T ss_pred CEEEEEEEECCC-CCCCceeEEEEECCC
Confidence 36778888663 344567778877543
No 259
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.43 E-value=2.8e+02 Score=34.38 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=12.8
Q ss_pred CCcCCCCCCCCCccccccc
Q 000624 963 RLQSQPRKNNLKPYHWLKL 981 (1385)
Q Consensus 963 ~~~~~~pk~klK~LhW~kI 981 (1385)
.......--.++++||...
T Consensus 84 sisslrqfEpiCKFH~~Ea 102 (527)
T PF15066_consen 84 SISSLRQFEPICKFHWTEA 102 (527)
T ss_pred ccccccccCcchhhhhhhh
Confidence 3344456667888999875
No 260
>PRK11519 tyrosine kinase; Provisional
Probab=46.02 E-value=2.7e+02 Score=37.12 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1242 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1242 v~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
-.++.|.+.+.++++.|+..+..+..........+ ..... ...-+.+.+++.++.+++....++...||++.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd-~~~ea----~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~h 338 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD-LPLEA----KAVLDSMVNIDAQLNELTFKEAEISKLYTKEH 338 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-chHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34556777788888888877766665332211111 00111 11223345566666667777777888899864
No 261
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=45.93 E-value=5.4e+02 Score=31.52 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-h-HHHHHHHHHHHHHHHHHHHHHH
Q 000624 1278 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP-F-EQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~-~-eeff~~l~~Fi~~fkka~een~ 1345 (1385)
+.++|..++..++...++|+. ++..++-.+..... . -+++..+..|+..+++.+-|..
T Consensus 177 ~~~~L~~yI~agel~~eel~~----------~i~~~~~~ka~~~~q~~v~~v~~~~~~~~~L~qRv~Dl~ 236 (386)
T COG3853 177 YFEHLEKYIAAGELKDEELET----------EIIPELKTKAESGNQMDVQQVNELTLFINRLEQRVYDLL 236 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HhhHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444432 34444444433322 1 2356777888888887777664
No 262
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=45.90 E-value=90 Score=30.89 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=48.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1385)
|.+.=+.-++++..+..+.|.||++|+-.+.. ..++++.....+ ..|. +.+.|.+.....-.+.|+||
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~~~n----P~Wn----e~f~f~v~~~~~~~l~i~v~ 70 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT----KKTKTDFRGGQH----PEWD----EELRFEITEDKKPILKVAVF 70 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCc----cccccccCCCCC----CccC----ceEEEEecCCCCCEEEEEEE
Confidence 55555666677776666789999999876421 122223221100 1121 22445443333345788899
Q ss_pred ecCCcccccceEEEEEeeccc
Q 000624 282 SLDSDQEREEMMFRVMFNTAF 302 (1385)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~F 302 (1385)
+.+.. . ...|.++.|...=
T Consensus 71 d~~~~-~-~~~iG~~~~~l~~ 89 (118)
T cd08681 71 DDDKR-K-PDLIGDTEVDLSP 89 (118)
T ss_pred eCCCC-C-CcceEEEEEecHH
Confidence 87642 2 5667777776553
No 263
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=45.87 E-value=3.7e+02 Score=27.95 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1277 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1346 (1385)
Q Consensus 1277 ~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k 1346 (1385)
.|...+...+..-+.++..+++.-+.+.+.|..-...|... ++.-.+=+..|.+....|.+..++.++
T Consensus 43 ~ys~q~~~l~~qw~~D~qk~ke~eEkl~n~~~qqQK~~qq~--r~~q~Qrlk~iK~l~eqflK~le~le~ 110 (130)
T PF04803_consen 43 EYSQQFSTLFQQWEADVQKFKEQEEKLSNIFQQQQKLFQQA--RIVQNQRLKAIKELHEQFLKSLEDLEK 110 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555666666566666665555555432 111223445555666666666655544
No 264
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=45.84 E-value=4.2e+02 Score=28.71 Aligned_cols=65 Identities=8% Similarity=0.097 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCCchhhHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCC
Q 000624 1250 EMQAISKGLEKVVQELTASENDGEVSGNFC-------KLLKEFLSYAEGEVRSL--ALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~~se~d~~~~d~F~-------~~l~~Fl~~a~~~l~~L--~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+++++++.|..++.|+...... ..+.|. ..+..|+..+.+++.+- ...++.+++.+++....++-
T Consensus 30 ~L~~l~~~l~~L~~EI~Y~~tp--L~ea~~~i~~~~~~~~~~~f~~~a~~L~~~~g~s~~eaw~~~~~~~~~~~~L 103 (171)
T PRK08307 30 QLRELKAALQSLEAEIMYGHTP--LPEALENIAKQSPKPISTLFQRFSERLESGEGETAYEAWEKALEENWKNTAL 103 (171)
T ss_pred HHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHccchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCC
Confidence 4556666666777776654321 112222 23556666665555442 23344444444444444443
No 265
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.83 E-value=2.9e+02 Score=36.58 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000624 1287 SYAEGEVRSLALLYSSVGRNA 1307 (1385)
Q Consensus 1287 ~~a~~~l~~L~~~~~~~~~~~ 1307 (1385)
..++.++.+.......+++.+
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433343333
No 266
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=45.79 E-value=4.3e+02 Score=35.08 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1290 EGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1290 ~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+..+..+...++...+..+.+..+++.
T Consensus 728 k~Ri~~~~ae~e~~vk~k~~l~rm~~d 754 (988)
T KOG2072|consen 728 KQRIEAAIAERESAVKDKKRLSRMYDD 754 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444455555555555555555553
No 267
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=45.67 E-value=3.1e+02 Score=36.89 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=23.5
Q ss_pred ceeeccchhhhhc-ccccCCchhHHHHH---------HHHHHhhCcccc
Q 000624 1189 VGFRLDSLLKLTD-TRARNNKMTLMHYL---------CKVLAEKLPELL 1227 (1385)
Q Consensus 1189 ~GFkL~sL~KL~d-tKs~d~k~TLLhyl---------~k~l~ek~pell 1227 (1385)
.-|.|+.+.++.+ ++.+.++.+|-++| ++++.+++|.+.
T Consensus 288 ~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~ 336 (802)
T PF13764_consen 288 EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLK 336 (802)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccc
Confidence 3577888887755 55555555555554 344566677653
No 268
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.64 E-value=4.1e+02 Score=35.46 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
.++.|.+.+.++++.|+.++.++..........+. ..... ..-.++.+|+.++..+.....++...||++.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~-~~ea~----~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~h 338 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL-NLEAK----AVLEQIVNVDNQLNELTFREAEISQLYKKDH 338 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45567777777777777777666553222111110 00111 1122345566666666777777888888864
No 269
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.59 E-value=2.4e+02 Score=32.57 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ee 1343 (1385)
+..-+..|...++...+.|..+...|.+-+...++.-.... ++=+..|.+++..|..++.+
T Consensus 155 ~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~E-e~Ri~~lk~~L~~~~~~~~~ 215 (261)
T cd07674 155 AELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIE-ETHLRHMKLLIKGYSHSVED 215 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555554444433333333111110 22344556666666554433
No 270
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.55 E-value=3.3e+02 Score=32.45 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 000624 1149 LNIINSASEEVRN 1161 (1385)
Q Consensus 1149 L~~v~~A~~eLr~ 1161 (1385)
|+.+.-+|++|++
T Consensus 65 LElY~~sC~EL~~ 77 (312)
T smart00787 65 LELYQFSCKELKK 77 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555543
No 271
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=45.35 E-value=1.4e+02 Score=33.47 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000624 1324 EQVVSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1324 eeff~~l~~Fi~~fkka~een 1344 (1385)
+.+..-+.+|+..|....+-.
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~I 110 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKRI 110 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777766554443
No 272
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=45.22 E-value=1e+02 Score=35.96 Aligned_cols=8 Identities=25% Similarity=0.073 Sum_probs=3.7
Q ss_pred CchhHHHH
Q 000624 1207 NKMTLMHY 1214 (1385)
Q Consensus 1207 ~k~TLLhy 1214 (1385)
...||+++
T Consensus 105 ~g~tl~~~ 112 (366)
T KOG1118|consen 105 FGHTLIDA 112 (366)
T ss_pred ccHHHHHH
Confidence 34455544
No 273
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.01 E-value=1.2e+02 Score=38.38 Aligned_cols=39 Identities=13% Similarity=0.336 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
+.|...+..|.+....+..+.-..|+++.+..++|.+||
T Consensus 218 ~gi~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~ 256 (491)
T KOG0251|consen 218 DGIINLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFL 256 (491)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666677777777777777766666665
No 274
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.99 E-value=1.4e+02 Score=29.80 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=49.3
Q ss_pred HHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1239 STKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1312 (1385)
Q Consensus 1239 Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1312 (1385)
|.+-+++.+.+.+....+.+..+++++...-+. +.+ ..++--+.+.+.+++.+...++.+....+-|++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~----~dv-~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTR----DDV-HDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888899988888764322 233 466777788888888888887777666655544
No 275
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.98 E-value=4.9e+02 Score=32.95 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=43.0
Q ss_pred ChhHHHHhHhccCCCC-CCHHHHhhhhhcCCCHHHHHHHH--hccCCCC--CcchhHHHHHHHhCCCcHHHHHHHHHHHH
Q 000624 1062 PLPDLMGSVLALDDSA-LDIDQVDNLIKFCPTKEEMEVLK--NYNGDKG--NLGKCEQFFLELMKVPRVESKLRVFSFKI 1136 (1385)
Q Consensus 1062 ~~~ei~~aIl~lD~~~-L~~e~le~Llk~~Pt~EE~~~Lk--~y~gd~~--~L~~~EqFll~L~~Iprl~~RL~~l~Fk~ 1136 (1385)
...|+++.=..+|+.. .-.+.++.|+.+.-..|..+.+. ++.|... .-.++-+|+++...+.- ++.-..
T Consensus 224 ~i~Elmq~r~~~dee~~~~~~svd~lis~~t~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~------~l~q~~ 297 (593)
T KOG2460|consen 224 FIDELMQSREQKDEELVKLLESVDFLISIQTSTESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEP------ALAQIT 297 (593)
T ss_pred hHHHHHHhhccCCchhhhhhhccchhhhcchhhhhhcceeEEEecCcccccccHHHHHHHHHHHhhcH------HhccCC
Confidence 4556666656665552 22345555555321112222222 2344433 34566788887765531 011122
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
+++..+.-++..+.....|++.+++
T Consensus 298 t~~~K~~llEkala~~edaI~~v~D 322 (593)
T KOG2460|consen 298 TYDQKLSLLEKALARCEDAIQNVRD 322 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444445555555555555544
No 276
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=44.76 E-value=4.2e+02 Score=31.35 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHhcc
Q 000624 1129 LRVFSFKIQFQT-QVSDLRTSLNIINSAS---EEVRNSIKLKRIMQTILSLGN 1177 (1385)
Q Consensus 1129 L~~l~Fk~~f~~-~v~~l~~~L~~v~~A~---~eLr~S~~L~~lL~~IL~lGN 1177 (1385)
|..+.|...|.. .+.-+++.|+.=+.++ +.=.++..|++++..|..+-|
T Consensus 125 LNlin~Cd~F~~~d~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~ 177 (307)
T PF15112_consen 125 LNLINSCDHFKKYDRKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLN 177 (307)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHH
Confidence 445555555544 3333444333322222 112335668888887777665
No 277
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.70 E-value=4.3e+02 Score=30.42 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000624 1327 VSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1327 f~~l~~Fi~~fkka~een 1344 (1385)
+..|.+++..|.....+.
T Consensus 199 i~~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 199 LRQMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455555555554443
No 278
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=44.70 E-value=86 Score=31.60 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
+....|.+.-+.-++++..+..+.+.||++|+-.
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~ 44 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL 44 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEE
Confidence 3445677777778888887766778999999864
No 279
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=44.67 E-value=82 Score=31.58 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
+....|.+.-+.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~ 46 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLL 46 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEE
Confidence 3456788888888999988877889999999964
No 280
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.55 E-value=9e+02 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1237 EASTKIQLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1237 ~~Askv~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
..|+...+..-.+++.+++..+++..-+.
T Consensus 917 keasicl~eeKDqei~EleailekQNca~ 945 (1424)
T KOG4572|consen 917 KEASICLIEEKDQEIEELEAILEKQNCAH 945 (1424)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhhhhH
Confidence 34444444444556666666666543333
No 281
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=44.31 E-value=1.7e+02 Score=37.23 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Q 000624 1287 SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1287 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
.++..+..++......+.+.|.+.|+-||-.-.+. -.++...+.+.=..|.++
T Consensus 141 ~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~ni-r~ELl~l~~~LP~~~~~i 193 (507)
T PF05600_consen 141 EDLDKKEEELQRSAAEARERYKKACKQLGIKGENI-REELLELVKELPSLFDEI 193 (507)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchh-HHHHHHHHHhhHHHHHHH
Confidence 33444445555555566666777777777654443 233444443333333333
No 282
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=44.27 E-value=3.3e+02 Score=29.51 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHhhc
Q 000624 1250 EMQAISKGLEKVVQELTAS 1268 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~~s 1268 (1385)
+++++++.|..++.|+...
T Consensus 29 ~L~~l~~~l~~L~~EI~Y~ 47 (170)
T TIGR02833 29 QLRQLINALQSLEAEIVYG 47 (170)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666654
No 283
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.21 E-value=5.2e+02 Score=34.68 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 000624 1125 VESKLRVFSFKIQFQTQVSDLRT 1147 (1385)
Q Consensus 1125 l~~RL~~l~Fk~~f~~~v~~l~~ 1147 (1385)
+++....+..+..+...+.+|++
T Consensus 938 l~~~ks~~Kl~kr~eKeL~~LrK 960 (1189)
T KOG1265|consen 938 LREHKSFVKLLKRHEKELRDLRK 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555544
No 284
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.17 E-value=1.2e+03 Score=33.32 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhh
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTA 1267 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~ 1267 (1385)
.++.+..++..++..|+.++.....
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ 338 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKD 338 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444333
No 285
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.10 E-value=90 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecC
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1385)
+++.-|.-++++..+..+.|.||++|+..+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~ 31 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGK 31 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECC
Confidence 345555556777777667899999999764
No 286
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=44.01 E-value=2.5e+02 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHHHH
Q 000624 1321 CPFEQVVSTLLNFVKMFV 1338 (1385)
Q Consensus 1321 ~~~eeff~~l~~Fi~~fk 1338 (1385)
.++++.|.+|..|-..+.
T Consensus 326 ~s~~~~~~ll~~f~~L~~ 343 (579)
T PF08385_consen 326 SSPEEAFRLLQKFKSLLN 343 (579)
T ss_pred CCHHHHHHHHHHHHhHhc
Confidence 356788888888877664
No 287
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.97 E-value=7.6e+02 Score=32.80 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHhhccCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1253 AISKGLEKVVQELTASENDGEV-----SGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1253 ~l~k~L~kl~~el~~se~d~~~-----~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
+|+..++.++.|+....+.... -+.....+++-+.+|-. ..+|++.|+++.....+....-
T Consensus 670 ~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~-~~~lkek~e~l~~e~~~~~~~~ 735 (762)
T PLN03229 670 DLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALN-SSELKEKFEELEAELAAARETA 735 (762)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHhHHHHHHHHHHHHHHhhccc
Confidence 3555666666666544332111 12223333333333322 1346666666666655544443
No 288
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.91 E-value=6.5e+02 Score=32.56 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
-..-..++..|++.|+.+.+.+.+-..-||..
T Consensus 131 e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a 162 (560)
T PF06160_consen 131 EEKNREEIEELKEKYRELRKELLAHSFSYGPA 162 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Confidence 34455667777777777777777777777763
No 289
>PRK05320 rhodanese superfamily protein; Provisional
Probab=43.85 E-value=46 Score=38.46 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=54.6
Q ss_pred eccceEEEecCCCCCCcchHHH-hhcHHHHHHHHHHhcC--CCceEEEecccCCccccccccccccCceeecCCCCCCCC
Q 000624 19 ISERVFVFDCCFTTDILEEEEY-KEYLGGIVGQLREYFP--EASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1385)
Q Consensus 19 IT~RIiam~~~fPa~~~~e~~Y-Rn~i~~V~~~L~~~h~--~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~ 95 (1385)
+-+-|++| |+++.+..+... .-...++.++|+..+. +....|...++.. +|. .-+++ |+
T Consensus 90 ~k~eiv~~--g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~----------E~~--~Ghi~----GA 151 (257)
T PRK05320 90 LKREIITM--KRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF----------EVD--VGTFD----GA 151 (257)
T ss_pred hhhHHhhc--CCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH----------HHc--cCccC----CC
Confidence 44556666 565443212211 1334566666765431 1137788777752 121 12221 22
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 96 PLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 96 P~p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
=.++++.+-.+...+..++....+.-|+|+|.+|. | +..++.+|...|
T Consensus 152 iniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-R--s~~Aa~~L~~~G 199 (257)
T PRK05320 152 LDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGI-R--CEKAAIHMQEVG 199 (257)
T ss_pred EeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCH-H--HHHHHHHHHHcC
Confidence 22356666665554445444334556999997664 5 566677775433
No 290
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=43.76 E-value=2.2e+02 Score=33.29 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=18.3
Q ss_pred CccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 000624 1229 FPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1229 f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~ 1266 (1385)
++-|..+|-..++++ .|...++.|----.|++.||.
T Consensus 210 vVpDvrsVVtt~RMq--vlkrQv~SL~~HQ~KLEaEL~ 245 (410)
T KOG4715|consen 210 VVPDVRSVVTTARMQ--VLKRQVQSLMVHQRKLEAELL 245 (410)
T ss_pred cccchhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444443 355555555555555555553
No 291
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=43.73 E-value=6e+02 Score=34.80 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhccCc
Q 000624 361 EAFAKVQEIFSNVDW 375 (1385)
Q Consensus 361 e~~~~~~~~~~~~~~ 375 (1385)
.|=..||+||.|-|-
T Consensus 604 AAA~IIqqImANPd~ 618 (1439)
T PF12252_consen 604 AAARIIQQIMANPDC 618 (1439)
T ss_pred HHHHHHHHHhcCCcc
Confidence 377889999988765
No 292
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=43.56 E-value=3.5e+02 Score=27.35 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=60.0
Q ss_pred cceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEE
Q 000624 200 RALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLE 279 (1385)
Q Consensus 200 ~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~ 279 (1385)
+.|.+.-|.=++++. .+.|.||++|+-.+. ....|......-..|. +.+.|+..-.-...+.|.
T Consensus 4 ~~L~V~Vi~A~~L~~---~~~~DPYv~v~l~~~---------~~~kT~v~~~~nP~Wn----E~f~f~~~~~~~~~l~v~ 67 (126)
T cd08400 4 RSLQLNVLEAHKLPV---KHVPHPYCVISLNEV---------KVARTKVREGPNPVWS----EEFVFDDLPPDVNSFTIS 67 (126)
T ss_pred eEEEEEEEEeeCCCC---CCCCCeeEEEEECCE---------eEEEeecCCCCCCccC----CEEEEecCCCCcCEEEEE
Confidence 346666666667765 356899999987531 1222221110001121 225554311111346677
Q ss_pred EEecCCcccccceEEEEEeecccccCCeEEeecccCcccccCCCCCCCCcEEEEEEEe
Q 000624 280 CISLDSDQEREEMMFRVMFNTAFIRSNILMLNRDEIDILWNSKDLFSKEFRAEVLFSE 337 (1385)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~~n~l~l~k~eLD~~~~~k~~fp~dF~vel~F~~ 337 (1385)
+++.+. ..+...|-++.+.-+.+..+...=.+-+|......+.+-.-+.++.|.|.+
T Consensus 68 v~d~~~-~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 68 LSNKAK-RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEECCC-CCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 887653 345667888888765555332222233444321112233345666666654
No 293
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=43.54 E-value=1.9e+02 Score=29.88 Aligned_cols=66 Identities=8% Similarity=0.113 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ----YFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~----yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~ 1347 (1385)
+.+...|..|++..+.+++.|+.....+++....... |++. +=.-|..+..|..++.+...-.++.
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~n------PlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSN------PLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc------HHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 4567788889999999998888888888777665543 3322 3456888888888887775544443
No 294
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.49 E-value=44 Score=38.49 Aligned_cols=14 Identities=21% Similarity=0.653 Sum_probs=10.1
Q ss_pred chhHHHHHHHHHHh
Q 000624 1208 KMTLMHYLCKVLAE 1221 (1385)
Q Consensus 1208 k~TLLhyl~k~l~e 1221 (1385)
+..+|+.||.++.+
T Consensus 124 RS~yLe~Lc~IIqe 137 (269)
T PF05278_consen 124 RSYYLECLCDIIQE 137 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 45778888887765
No 295
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=43.26 E-value=8.2e+02 Score=31.28 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCcccee
Q 000624 1134 FKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGF 1191 (1385)
Q Consensus 1134 Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GF 1191 (1385)
....|.+.+......+....+++..+.. .-..++..++.+...++.+.......++
T Consensus 101 e~~~~~~el~~~~r~~k~~e~~~~~~~~--~~~hl~~~~~~~~~~l~ea~~~~e~~~~ 156 (508)
T KOG1840|consen 101 EGEWLEDELALTQRALKQSERSVAQLEE--EKLHLLAAIQALLLQLDEAEQGQEQAAV 156 (508)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 3344566666666666666666666654 1123334444455566665544444443
No 296
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=43.12 E-value=1.6e+02 Score=28.70 Aligned_cols=85 Identities=6% Similarity=-0.036 Sum_probs=45.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECI 281 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1385)
|++.-+.-++++..+..+.|.||++|+-++ ..+.|....+...-... +.+.|.+.-.-...+.|+|+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----------~~~kT~v~~~t~nP~Wn---e~f~f~v~~~~~~~l~v~v~ 68 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK----------TTQKSKVKERTNNPVWE---EGFTFLVRNPENQELEIEVK 68 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC----------EEEeCccccCCCCCccc---ceEEEEeCCCCCCEEEEEEE
Confidence 444555556777766667799999998764 12333222111111111 12445443222335777787
Q ss_pred ecCCcccccceEEEEEeecccc
Q 000624 282 SLDSDQEREEMMFRVMFNTAFI 303 (1385)
Q Consensus 282 h~~~~~~~~~~~Fr~~FnT~FI 303 (1385)
..+. ...|.++.|+-.-+
T Consensus 69 d~~~----~~~iG~~~i~l~~l 86 (105)
T cd04050 69 DDKT----GKSLGSLTLPLSEL 86 (105)
T ss_pred ECCC----CCccEEEEEEHHHh
Confidence 7653 34566766665544
No 297
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=43.07 E-value=1e+02 Score=34.58 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=11.7
Q ss_pred ccCCchhHHHHHHHHHHh
Q 000624 1204 ARNNKMTLMHYLCKVLAE 1221 (1385)
Q Consensus 1204 s~d~k~TLLhyl~k~l~e 1221 (1385)
....+..+++-+|+.+..
T Consensus 64 p~~~~~~If~Alc~a~~~ 81 (216)
T PF11264_consen 64 PEEDKDSIFNALCQALGF 81 (216)
T ss_pred ChhHHHHHHHHHHHHcCC
Confidence 334566778888877643
No 298
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.02 E-value=1.7e+02 Score=36.76 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHH
Q 000624 1242 IQLKFLAEEMQAISKGLEKVVQ 1263 (1385)
Q Consensus 1242 v~l~~L~~e~~~l~k~L~kl~~ 1263 (1385)
+-++.+.+.++.+.++|..++.
T Consensus 375 ~~yS~lq~~l~~~~~~l~~i~~ 396 (570)
T COG4477 375 VAYSELQDNLEEIEKALTDIED 396 (570)
T ss_pred ccHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555543
No 299
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.68 E-value=5.2e+02 Score=28.83 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHh
Q 000624 1136 IQFQTQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1136 ~~f~~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
.++.+.+.+|+..++.+.++|..+.+
T Consensus 5 ~~~E~d~~~Le~~l~Kl~K~~~~~~d 30 (200)
T cd07638 5 EDVEGDVAELELKLDKLVKLCIGMID 30 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999998877
No 300
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=42.35 E-value=2.7e+02 Score=34.09 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHhcccccCCC--CCCccceeeccchhhhhcccccCCchhHHHHHHHHHHhh
Q 000624 1161 NSIKLKRIMQTILSLGNALNHGT--ARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEK 1222 (1385)
Q Consensus 1161 ~S~~L~~lL~~IL~lGN~LN~Gt--~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek 1222 (1385)
+.+++.-|-+++--+|-++|+-. -+..-+-|-+.-|.-|...|+...-.-=|.|.+.+..+|
T Consensus 229 Ete~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveK 292 (457)
T KOG2085|consen 229 ETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEK 292 (457)
T ss_pred cccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeecc
Confidence 34444444444555677788543 122233344455666666666544333344444333333
No 301
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=42.27 E-value=2.2e+02 Score=33.05 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Q 000624 1284 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1284 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
.|......-+..-++.+.++.+....+...+.+... .+..++..+..|...|..+
T Consensus 105 ~~a~~~~~~l~~n~~~L~~~~~~L~p~~~lL~~~~p--~l~c~L~~l~~~~~~~~~~ 159 (267)
T PF11887_consen 105 GLADTGTDFLADNRDNLIRALDDLRPTTDLLAKYSP--ELPCTLQGLAPFAPAFADA 159 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333344444444444444321 2344555555555544443
No 302
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=42.26 E-value=1.3e+02 Score=34.88 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
|-|..-| .|+..|...+.+.--.+.++.=.|..=..||.|
T Consensus 135 DDf~REl-aFYkQa~~aVl~A~~rL~elgV~~~RP~DYfAE 174 (328)
T KOG3080|consen 135 DDFAREL-AFYKQALSAVLEAFPRLHELGVPFLRPTDYFAE 174 (328)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHH
Confidence 3344333 455555555555444444454455555666666
No 303
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=42.15 E-value=84 Score=32.14 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCCCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-cc
Q 000624 195 WPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HI 272 (1385)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-~v 272 (1385)
+.+....|.+.-|.-++++..+..+.|.||++|+-.... .....+.|....+... .|. ..+.|++.. .+
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~-----~~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l 80 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG-----KRLKKKKTTIKKRTLNPYYN----ESFSFEVPFEQI 80 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC-----cccceeeccceeCCCCCccc----ceEEEECCHHHh
Confidence 434556688888888888888777779999999864210 0011222221111111 121 224454421 23
Q ss_pred cC-CEEEEEEecCCcccccceEEEEEeec
Q 000624 273 QG-DVVLECISLDSDQEREEMMFRVMFNT 300 (1385)
Q Consensus 273 ~G-DV~i~~~h~~~~~~~~~~~Fr~~FnT 300 (1385)
++ .+.|++++.+. .+..+.|.++.|--
T Consensus 81 ~~~~l~~~v~d~~~-~~~~~~iG~~~i~~ 108 (136)
T cd08402 81 QKVHLIVTVLDYDR-IGKNDPIGKVVLGC 108 (136)
T ss_pred CCCEEEEEEEeCCC-CCCCceeEEEEECC
Confidence 32 46778887663 33445666665543
No 304
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.09 E-value=4.8e+02 Score=31.51 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1242 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1242 v~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
-.+..+.+++.++++.|++.+..+..-.+....-+ ...-.......+.+|+..+.+++..+.++..||+++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d-----~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~ 240 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD-----PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQ 240 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 34556778888888888888777665433221111 011112233456677777777778888888899994
No 305
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=41.99 E-value=62 Score=34.85 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=66.6
Q ss_pred ccceEEEecCCCCCCcchHHHhhcHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCC----
Q 000624 20 SERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC---- 95 (1385)
Q Consensus 20 T~RIiam~~~fPa~~~~e~~YRn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~---- 95 (1385)
..+|+|. +|=+...-...|. ...+.++.|++. +. -.+|++-.......+......||-.|..||..-.+.
T Consensus 21 ~~~l~AT--s~ds~~~l~~kY~-~~~~nl~~L~~~--g~-~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~ 94 (166)
T PF10354_consen 21 ATNLVAT--SYDSEEELLQKYP-DAEENLEELREL--GV-TVLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGK 94 (166)
T ss_pred CCeEEEe--ecCchHHHHHhcc-cHHHHHHHHhhc--CC-ccccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchh
Confidence 5689999 7776533344454 345777778433 33 567888777655444223466888899998543111
Q ss_pred -CC-CcHHHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 000624 96 -PL-LTMETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1385)
Q Consensus 96 -P~-p~L~~l~~~c~~~~~WL~~d~~NVvvvHCk~ 128 (1385)
.. ..-++|..|++++..-|.. ...|.|-||.+
T Consensus 95 ~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~ 128 (166)
T PF10354_consen 95 RNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDG 128 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 00 1347899999999998877 45699999964
No 306
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.95 E-value=1.4e+03 Score=33.65 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=26.1
Q ss_pred cHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1124 RVESKLRVFSF-KIQFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1124 rl~~RL~~l~F-k~~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
.+..+++-+-| ...|...+.+++..+..+....+-|+..
T Consensus 1247 El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1247 ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444 3466777888888888888888777663
No 307
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.83 E-value=5.7e+02 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1283 KEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1283 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
+.|+..-+.-+..|++.++++...|..+-.+.
T Consensus 291 QqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 291 QQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555655555554443
No 308
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.79 E-value=1.2e+02 Score=37.49 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhc-------cC---C-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTAS-------EN---D-GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNA 1307 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~s-------e~---d-~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~ 1307 (1385)
+++.+..+|..+.+.|.+++..+... |. + .-....|+......+.+++++++.+.+-|..++...
T Consensus 247 qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 247 QLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555444321 00 0 001257888888999999999998888887776543
No 309
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=41.73 E-value=2e+02 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSS 1302 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~ 1302 (1385)
..|+..+.+|+...-..+. -..+|..
T Consensus 16 k~Fr~~~~~F~~~lv~~~~-~~~Lyd~ 41 (118)
T PF08514_consen 16 KKFRKNFCEFFDQLVEQCH-SSILYDD 41 (118)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccccccH
Confidence 5677777777777666655 3444543
No 310
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=41.72 E-value=1.5e+02 Score=29.69 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccc-ccc-C
Q 000624 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHC-HIQ-G 274 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~-~v~-G 274 (1385)
....|.+.-+.-++++..+..+.|.||++|+-... .+.++.|........ .|. +.+.|.+.. .+. .
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-------~~~~~kT~v~~~t~nP~wn----e~f~f~i~~~~l~~~ 82 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-------KKKKFETKVHRKTLNPVFN----ETFTFKVPYSELGNK 82 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-------CCCceecccCcCCCCCcee----eeEEEeCCHHHhCCC
Confidence 44668888888888887776678999999986421 112344432211111 221 235555432 233 3
Q ss_pred CEEEEEEecCCcccccceEEEEEeecccc
Q 000624 275 DVVLECISLDSDQEREEMMFRVMFNTAFI 303 (1385)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1385)
-+.|++++.+. ......|-++.|.-.-+
T Consensus 83 ~l~~~V~d~d~-~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 83 TLVFSVYDFDR-FSKHDLIGEVRVPLLTV 110 (124)
T ss_pred EEEEEEEeCCC-CCCCceeEEEEEecCcc
Confidence 46777887653 33445566666555444
No 311
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=41.71 E-value=9.9e+02 Score=31.77 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 000624 105 HFLRSSESWLS 115 (1385)
Q Consensus 105 ~~c~~~~~WL~ 115 (1385)
||+.+|++|..
T Consensus 42 hVVqsVeKfi~ 52 (894)
T KOG0132|consen 42 HVVQSVEKFIK 52 (894)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 312
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.61 E-value=2.4e+02 Score=31.79 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000624 1329 TLLNFVKMFVLAH 1341 (1385)
Q Consensus 1329 ~l~~Fi~~fkka~ 1341 (1385)
.|.+|+..+-++.
T Consensus 182 ~ly~~ia~~ik~s 194 (230)
T PF03904_consen 182 HLYKAIASKIKAS 194 (230)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444433
No 313
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=41.49 E-value=1.2e+02 Score=38.42 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHH
Q 000624 1215 LCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVR 1294 (1385)
Q Consensus 1215 l~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~ 1294 (1385)
|..+.+.....+....++...-..-..+++..|.+++.++++.|++..+.......+......-...+..=+..++.+++
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1295 SLALLYSSVGRNADALAQYFGE-----DPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKA 1358 (1385)
Q Consensus 1295 ~L~~~~~~~~~~~~~l~~yFGE-----dp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~ke 1358 (1385)
.|+.....+...-..+..-++. |....-.-++-..+.+.+..+.-....+....+.++++.+++
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
No 314
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.37 E-value=3.3e+02 Score=31.13 Aligned_cols=197 Identities=17% Similarity=0.270 Sum_probs=93.1
Q ss_pred hcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhCCCc--HHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHhhH
Q 000624 1088 KFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPR--VESKLRVFSFKIQFQTQV--SDLRTSLNIINSASEEVRNSI 1163 (1385)
Q Consensus 1088 k~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~Ipr--l~~RL~~l~Fk~~f~~~v--~~l~~~L~~v~~A~~eLr~S~ 1163 (1385)
..-||+||.+.... ..+.|.++|..+..+..+.+ ++.|-.+ +..-+.++ ..+...+-.|.+.++....+.
T Consensus 24 naqpt~eerei~n~---~~evl~d~~~vl~d~~~y~~~~~~~r~~i---q~~~d~q~~ekaw~av~PlV~r~k~~ye~~~ 97 (321)
T KOG3951|consen 24 NAQPTDEEREIYNM---AEEVLQDADLVLADVSSYGNGCYAERNAI---QNPADEQLQEKAWGAVVPLVGRTKSYYEHVA 97 (321)
T ss_pred ccCCChHHHHHHHH---HHHHHHhhHHHHHHHHHHhcccHHHHHHh---hCCCcHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34477777665544 23456666666666655433 2222111 00111111 112233445566666677777
Q ss_pred HHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhh
Q 000624 1164 KLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQ 1243 (1385)
Q Consensus 1164 ~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~ 1243 (1385)
++.+++..+|- -|+.|- |..-..| .++ +.+.++|.+++.|.-++..+. .-
T Consensus 98 ~lek~v~~llg---~L~~~p---------l~~~~~l------~~~--------QalaKQfAeil~F~LrFDelK----M~ 147 (321)
T KOG3951|consen 98 KIEKIVPIILG---SLSSGP---------LPLEEQL------ANK--------QALAKQFAEILHFTLRFDELK----MR 147 (321)
T ss_pred HHHHHHHHHHH---hhcCCC---------CCchHHH------HHH--------HHHHHHHHHHHHheehhhhhh----cc
Confidence 78888777765 244432 1111111 112 223333444555544433332 11
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCh
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1323 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~ 1323 (1385)
-..|.+|+.=.++.+.+..-.. ... ..+..+....|+-|+.+|..-++.|.+. +..|..|+. ..+.
T Consensus 148 tpaIqNDfSYYRRt~sr~rv~~--~~~-~ev~~ELanrmslFyaeatPMLKtLs~a----------t~kfvsenk-~lpI 213 (321)
T KOG3951|consen 148 TPAIQNDFSYYRRTLSRMRVYQ--DPA-NEVNNELANRMSLFYAEATPMLKTLSNA----------TTKFVSENK-NLPI 213 (321)
T ss_pred ChhhccchHHHHHHHHHHHhcc--Chh-hhccHHHHhHHHHHHhccCHHHHHHHHH----------HHHHHhccC-CCCc
Confidence 1224444444445444433111 111 1233567778999999998877665543 455666653 2222
Q ss_pred ---HHHHHHHHHHH
Q 000624 1324 ---EQVVSTLLNFV 1334 (1385)
Q Consensus 1324 ---eeff~~l~~Fi 1334 (1385)
.+.|+++..-+
T Consensus 214 eNTTd~l~TmasVC 227 (321)
T KOG3951|consen 214 ENTTDCLSTMASVC 227 (321)
T ss_pred cchhHHHHHHHHHH
Confidence 34566555544
No 315
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=41.21 E-value=1.6e+02 Score=31.17 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDG-EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~-~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
++..+.+++..|.+.++.++...+.-.++- ...+......+.-+++..+.+.+|+..++.+.+..+.+
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 345556666666666666655554433221 12233333444456666777777777766665555444
No 316
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.20 E-value=9.8e+02 Score=35.54 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEE
Q 000624 102 TVHHFLRSSESWLSLGHQNVLL 123 (1385)
Q Consensus 102 ~l~~~c~~~~~WL~~d~~NVvv 123 (1385)
.|+.+-...|..|-.+-+|--.
T Consensus 150 HIfavad~AYr~mL~~renQSi 171 (1930)
T KOG0161|consen 150 HIFAVADEAYRNMLQDRENQSI 171 (1930)
T ss_pred hHHHHHHHHHHHHHhcCCCceE
Confidence 4777777777777766665433
No 317
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=41.04 E-value=5.5e+02 Score=35.06 Aligned_cols=266 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHH------HHHHHhccCCCCCcchhHHHH
Q 000624 1043 LIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEE------MEVLKNYNGDKGNLGKCEQFF 1116 (1385)
Q Consensus 1043 lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE------~~~Lk~y~gd~~~L~~~EqFl 1116 (1385)
+||....+|++|+...+.-..+--+-..++--.+.+..-.+. .=.+.|..+- ..++.-...+...+.....++
T Consensus 539 vlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk-~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l 617 (1125)
T KOG0217|consen 539 VLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLK-TWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETL 617 (1125)
T ss_pred eecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHH-HHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q ss_pred HHHhCCCcHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHhcc-----------------
Q 000624 1117 LELMKVPRVESKLRVFSFK-IQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTI-LSLGN----------------- 1177 (1385)
Q Consensus 1117 l~L~~Iprl~~RL~~l~Fk-~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~I-L~lGN----------------- 1177 (1385)
..|-++.|+-.|+..-.-+ ..=...+....+.++.+..++..+++-.+....+++| +.++|
T Consensus 618 ~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r 697 (1125)
T KOG0217|consen 618 KKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDR 697 (1125)
T ss_pred hhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q ss_pred --cccCCCCCCccceeeccchhhhhcccccCCchhHHHHHHHHHHh------------------hCccccCCccccccHH
Q 000624 1178 --ALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAE------------------KLPELLGFPKDLVSLE 1237 (1385)
Q Consensus 1178 --~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~e------------------k~pell~f~~eL~~l~ 1237 (1385)
.+|.|----.+ ||.-+.=.-+..++...+- |+.||.++-.. ..|+-......+.-+.
T Consensus 698 ~~a~~eg~i~P~~-Gfd~eyD~a~k~~~e~e~~--L~~~L~~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~ 774 (1125)
T KOG0217|consen 698 VKAVKEGVIVPLE-GFDEEYDEAMKRVDEAENE--LLAYLEEYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYEL 774 (1125)
T ss_pred HHHhhcCccCCCc-cccHHHHHHhhHHHHHHHH--HHHHHHHHHHhcCCCceeEeecCceEEEEecCcccCCCCchHHHH
Q ss_pred HHHhhhHHHH-HHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1238 ASTKIQLKFL-AEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1238 ~Askv~l~~L-~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
.+++--+... ..++.++.+.|..++.+...+.+|+. ..|...|.+-+..-.+.++.+... ++--.+..+.+++|+
T Consensus 775 ~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~--~r~~~~f~~~~~~w~~tv~~~a~i--D~l~sla~~s~~~~~ 850 (1125)
T KOG0217|consen 775 MSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLK--RRLIVRFDEHYIIWQATVKALASI--DCLLSLAETSKGLGG 850 (1125)
T ss_pred HHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHhhccCCC
No 318
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.99 E-value=9.8e+02 Score=31.52 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1323 FEQVVSTLLNFVKMFVLAHEENCR 1346 (1385)
Q Consensus 1323 ~eeff~~l~~Fi~~fkka~een~k 1346 (1385)
.++-+..|...+..|+..+.++.+
T Consensus 224 s~etl~~L~~~v~~l~~~k~qr~~ 247 (660)
T KOG4302|consen 224 SDETLDRLDKMVKKLKEEKKQRLQ 247 (660)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777666655543
No 319
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=40.93 E-value=1.5e+02 Score=29.00 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=19.0
Q ss_pred EeEEEEeeccccCCCCcceeEEEEEecC
Q 000624 204 LDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1385)
Q Consensus 204 L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1385)
|.=|.-++++..+..+.|.||++|+..+
T Consensus 3 v~vi~a~~L~~~~~~~~~dpyv~v~~~~ 30 (115)
T cd04040 3 VDVISAENLPSADRNGKSDPFVKFYLNG 30 (115)
T ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEECC
Confidence 3334445667666556789999998753
No 320
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.87 E-value=1.3e+03 Score=32.84 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=6.3
Q ss_pred CHHHHhhhhhcCC
Q 000624 1079 DIDQVDNLIKFCP 1091 (1385)
Q Consensus 1079 ~~e~le~Llk~~P 1091 (1385)
.-..|+.++.+-|
T Consensus 142 ~QG~V~~i~~~kp 154 (1163)
T COG1196 142 SQGKVEEIINAKP 154 (1163)
T ss_pred ecccHHHHHcCCH
Confidence 3344555555543
No 321
>PF13166 AAA_13: AAA domain
Probab=40.71 E-value=4.4e+02 Score=34.91 Aligned_cols=206 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHhC--CCcHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000624 1073 LDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMK--VPRVESKLRVFSFKIQFQTQVSDLRTSLN 1150 (1385)
Q Consensus 1073 lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~~--Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~ 1150 (1385)
|....++.+..+.|.+++ .++.+.+.+ .|...-+-+..... +..+...+..-.+...|...+.++...+.
T Consensus 261 C~q~~l~~~~~~~l~~~f--~~~~~~~~~------~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (712)
T PF13166_consen 261 CQQEPLSEERKERLEKYF--DEEYEKLIE------ELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIE 332 (712)
T ss_pred CCCcCCcHHHHHHHHHHH--HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCc
Q 000624 1151 IINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFP 1230 (1385)
Q Consensus 1151 ~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~ 1230 (1385)
.+...++.++. .|.+-.+.-.. -+.++.+.... +.-.+.+.-+...+.+....+.++.
T Consensus 333 ~l~~~l~~l~~------------~L~~K~~~~~~-----~~~~~~~~~~~-----~~l~~~i~~~n~~i~~~n~~~~~~~ 390 (712)
T PF13166_consen 333 ALKEELEELKK------------ALEKKIKNPSS-----PIELEEINEDI-----DELNSIIDELNELIEEHNEKIDNLK 390 (712)
T ss_pred HHHHHHHHHHH------------HHHHHHhcccc-----cccccchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccHHHHH-hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000624 1231 KDLVSLEAST-KIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALL---YSSVGRN 1306 (1385)
Q Consensus 1231 ~eL~~l~~As-kv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~---~~~~~~~ 1306 (1385)
.++..+.... ..-+..+..++..+.+.+..+++.+...... ...+..-+...+.++.+|+.. .....+.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 463 (712)
T PF13166_consen 391 KEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKK-------LKKAKEEIKKIEKEIKELEAQLKNTEPAADR 463 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHhC
Q 000624 1307 ADALAQYFG 1315 (1385)
Q Consensus 1307 ~~~l~~yFG 1315 (1385)
+++.+..||
T Consensus 464 iN~~L~~~g 472 (712)
T PF13166_consen 464 INEELKRLG 472 (712)
T ss_pred HHHHHHHhC
No 322
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=40.68 E-value=2.7e+02 Score=35.38 Aligned_cols=132 Identities=8% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhCccccCCccccccHHHHHhhhH-HHHHHHHHHHHHhHHHHHHHHhhccCCCCchhh-HHHHHHHHHHH
Q 000624 1211 LMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQL-KFLAEEMQAISKGLEKVVQELTASENDGEVSGN-FCKLLKEFLSY 1288 (1385)
Q Consensus 1211 LLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l-~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~-F~~~l~~Fl~~ 1288 (1385)
|..-|-+++..-...+..|.+-...+..|..++- +.++.||..-+|.|.+++.+++.=.+...+.|+ -.-..+..++.
T Consensus 6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~ 85 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQ 85 (575)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH
Confidence 4444444443323334444444455555554433 346666666666777777666652222122232 11112223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFG--EDPARCPFEQVVSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFG--Edp~~~~~eeff~~l~~Fi~~fkka~een 1344 (1385)
..++++.++...+. +.|-+...--. -|++...-.+....|.+-+..+.+..+..
T Consensus 86 ~MErfK~vEke~Kt--Ka~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ 141 (575)
T KOG2150|consen 86 RMERFKAVEKEMKT--KAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSF 141 (575)
T ss_pred HHHHHHHHHHHhhc--cccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322110 11111111000 14443334567777777777777666543
No 323
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=40.67 E-value=1.2e+02 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.073 Sum_probs=22.0
Q ss_pred eEEeEEEEeeccccCCC-CcceeEEEEEec
Q 000624 202 LTLDCVILRVIPNFDGE-GGCCPIFRIYGQ 230 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1385)
|.++-+.-++++..+.. +.|.||++|+-.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~ 32 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFA 32 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEc
Confidence 55666666778877766 789999999864
No 324
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.62 E-value=4.7e+02 Score=28.69 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 000624 1210 TLMHYLC 1216 (1385)
Q Consensus 1210 TLLhyl~ 1216 (1385)
.|+.++.
T Consensus 61 pll~~~~ 67 (204)
T PF04740_consen 61 PLLQGLI 67 (204)
T ss_pred HHHHHHH
Confidence 3444433
No 325
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.61 E-value=47 Score=40.84 Aligned_cols=13 Identities=23% Similarity=0.352 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 000624 1326 VVSTLLNFVKMFV 1338 (1385)
Q Consensus 1326 ff~~l~~Fi~~fk 1338 (1385)
+...|.+|+..|.
T Consensus 110 vl~pl~~~~~~fp 122 (460)
T KOG3771|consen 110 VLLPLDTYLGQFP 122 (460)
T ss_pred hhhhHHHhhhhch
Confidence 3344444444443
No 326
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=40.48 E-value=1.6e+02 Score=34.38 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 000624 1149 LNIINSASEEVRNSIKLKRIMQTILSL 1175 (1385)
Q Consensus 1149 L~~v~~A~~eLr~S~~L~~lL~~IL~l 1175 (1385)
++.+...+.++.+...-.++-.++-.+
T Consensus 132 l~~ll~~~~~ll~~~~~~~l~~~l~~l 158 (291)
T TIGR00996 132 IDDLLGSLTRLLNGLDPEKLNAILNAL 158 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444555555554443333333333333
No 327
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=40.46 E-value=36 Score=42.41 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcchhHHHHHHHHH
Q 000624 101 ETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIY 144 (1385)
Q Consensus 101 ~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~tg~~ia~yLly 144 (1385)
..|-.+|..+..+|..+...=++|||..||-...|+++|.|-.|
T Consensus 358 ~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~ 401 (451)
T PF04179_consen 358 KALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKL 401 (451)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHh
Confidence 45567777888888887778899999999977666665554433
No 328
>PHA03378 EBNA-3B; Provisional
Probab=40.44 E-value=3e+02 Score=35.53 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHH
Q 000624 99 TMETVHHFLRSS 110 (1385)
Q Consensus 99 ~L~~l~~~c~~~ 110 (1385)
-+++++.+|.+|
T Consensus 107 viqL~hAaydA~ 118 (991)
T PHA03378 107 VIQLVHAVYDSM 118 (991)
T ss_pred HHHHHHHHHHHh
Confidence 577777777765
No 329
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=40.23 E-value=3.5e+02 Score=28.50 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=61.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCc-cee-eecccCceeEEEcccccccCCEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSK-LVR-HYKQADCELVKIDIHCHIQGDVVLE 279 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~-~~~-~y~~~d~~~i~~~~~~~v~GDV~i~ 279 (1385)
|.+.=+.-++++..+..+.|.||++|+-++. .+.|..... ... .|. +.|.|.+.-...--+.|+
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~----------~~kTk~~~~~t~nP~WN----E~F~f~v~~~~~~~l~v~ 67 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ----------VLRTRPSQTRNGNPSWN----EELMFVAAEPFEDHLILS 67 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCE----------EeeeEeccCCCCCCccc----CcEEEEecCccCCeEEEE
Confidence 4455566677777777778999999987641 222221111 111 221 224454321122356677
Q ss_pred EEecCCcccccceEEEEEeecccccCC---------eEEeecccCcccc--cCCCCCCCCcEEEEEEEe
Q 000624 280 CISLDSDQEREEMMFRVMFNTAFIRSN---------ILMLNRDEIDILW--NSKDLFSKEFRAEVLFSE 337 (1385)
Q Consensus 280 ~~h~~~~~~~~~~~Fr~~FnT~FI~~n---------~l~l~k~eLD~~~--~~k~~fp~dF~vel~F~~ 337 (1385)
+++.+. ..++..|.++.|.-.-|..+ -+.|.+. .++. +.+.+......|+|.|..
T Consensus 68 V~d~~~-~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~--~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 68 VEDRVG-PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP--GGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEecC-CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC--CCcccccccCcccccEEEEEEecC
Confidence 777543 23456677777776655321 1222211 1110 122466777888888874
No 330
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=40.20 E-value=6e+02 Score=28.81 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
+|++.+.++...++....+++.|..
T Consensus 14 eld~df~~l~~~~D~tk~~~~~i~~ 38 (220)
T cd07617 14 ELDAHFENLLARADSTKNWTEKILR 38 (220)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776666533
No 331
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=40.14 E-value=2.8e+02 Score=25.04 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ 1341 (1385)
.|..+..........|+..+.++......+...+..+ +. +.|...+.+|...|.+..
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~-a~---~af~~~~~~~~~~~~~~~ 64 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGE-AA---DAFQDKFEEWNQAFRQLN 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSS-TS---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-HH---HHHHHHHHHHHHHHHHHH
Confidence 4555556666666667777777777777776555433 22 334444444444444443
No 332
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=40.11 E-value=2.7e+02 Score=31.73 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHH----HHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHH
Q 000624 1210 TLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAE----EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEF 1285 (1385)
Q Consensus 1210 TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~----e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~F 1285 (1385)
-+++-|-..|..-||....+.+ =..+..+.+.=+..+.+ .+..++.|++.+++. + ..|.-....|
T Consensus 38 ~~vd~lF~~L~aifPa~~a~~~-~~~~~~aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~----~------spF~PS~GqF 106 (233)
T PF06992_consen 38 KLVDRLFRQLKAIFPAWRANPD-QEELNEAKRQWIKAFAENGITTMEQVRAGMRRARAS----E------SPFWPSPGQF 106 (233)
T ss_pred HHHHHHHHHHHHhCchhccCCC-HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----C------CCCCCChhHH
Confidence 3667777777777887544422 22233343333333332 246677777776543 2 3477888899
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCC
Q 000624 1286 LSYAEGEVRSLALL--YSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~--~~~~~~~~~~l~~yFGE 1316 (1385)
+.-|+..--..--+ .+++.+.+.+.+.|+|.
T Consensus 107 I~WCk~~~~~~lGLP~~del~~~~~~y~~~rg~ 139 (233)
T PF06992_consen 107 IAWCKPGDYEALGLPSVDELYQRYKRYCRYRGF 139 (233)
T ss_pred HHHHhcchHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 99997543221111 22333445556666564
No 333
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=40.10 E-value=1.1e+02 Score=31.88 Aligned_cols=101 Identities=10% Similarity=0.134 Sum_probs=55.2
Q ss_pred cCCCCCCCCcceEEeEEEEeeccccCCCCcceeEEEEEecC--CccccCCCCcEEEeCCCCCccee-eecccCceeEEEc
Q 000624 191 VGSEWPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQD--PLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKID 267 (1385)
Q Consensus 191 ~~~~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~--~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~ 267 (1385)
.+..+.|....|++.=+.=++++.+...++-.||++|+-.. ..+ ..+.+.++..+. .. .|. +.|.|+
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~-~KkKT~v~k~t~-----~~P~fN----EsF~Fd 74 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLL-YKKKTRLVKSSN-----GQVKWG----ETMIFP 74 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcc-eeecCccEECCC-----CCceec----ceEEEe
Confidence 34445566677888777778888875445567999986532 111 001111111110 11 132 347787
Q ss_pred ccccccCCEEE--EEEecCCcccccceEEEEEeecccc
Q 000624 268 IHCHIQGDVVL--ECISLDSDQEREEMMFRVMFNTAFI 303 (1385)
Q Consensus 268 ~~~~v~GDV~i--~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1385)
+..... ||.+ ++++.+. ..+.+.|.++.|-..-.
T Consensus 75 v~~~~~-~v~l~v~v~d~~~-~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 75 VTQQEH-GIQFLIKLYSRSS-VRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCchhh-eeEEEEEEEeCCC-CcCCceEEEEEECCccC
Confidence 765554 4555 4555432 44567788888876543
No 334
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=40.09 E-value=2.1e+02 Score=28.14 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=47.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccccccCCEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
+++.-+.-++++..+..+.|.||++|+-.+ ..+.|....+... .|. ..+.|.+.-.-..-+.|+|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~----------~~~kT~v~~~t~nP~Wn----e~f~f~~~~~~~~~l~v~v 67 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN----------EKYKSKVCSKTLNPQWL----EQFDLHLFDDQSQILEIEV 67 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC----------EeEecccccCCCCCcee----EEEEEEecCCCCCEEEEEE
Confidence 344555556777766667799999999753 1233322111111 121 2244543222234566677
Q ss_pred EecCCcccccceEEEEEeeccccc
Q 000624 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
++.+. ......|.++.|+-+-+.
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~l~ 90 (116)
T cd08376 68 WDKDT-GKKDEFIGRCEIDLSALP 90 (116)
T ss_pred EECCC-CCCCCeEEEEEEeHHHCC
Confidence 87653 334567777777755444
No 335
>PHA02562 46 endonuclease subunit; Provisional
Probab=40.02 E-value=9.1e+02 Score=30.84 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYS 1301 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~ 1301 (1385)
+..-+...+.+++.++....
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 336
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=39.94 E-value=9.2e+02 Score=30.90 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000624 1323 FEQVVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1323 ~eeff~~l~~Fi~~fkka~ 1341 (1385)
+.++...|.........+.
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444443
No 337
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=39.85 E-value=5.2e+02 Score=28.62 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 000624 1294 RSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLN--FVKMFVLAHEENCRQLEFERKK 1354 (1385)
Q Consensus 1294 ~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~--Fi~~fkka~een~k~~e~Ekkk 1354 (1385)
++++..+.++....+.+..- .-..||..-.+ |-..+++..++..++++.+++.
T Consensus 121 Ke~E~El~eVv~EAn~l~pg--------Wgq~IF~~A~Ei~~N~~lr~r~~~i~~~~e~~~~~ 175 (190)
T PF09802_consen 121 KEMEEELKEVVQEANALKPG--------WGQTIFQSANEICFNEALRRRLEEIQKRKEEEKEW 175 (190)
T ss_pred HHHHHHHHHHHHHHHhcccC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555545554322 22347776666 3334555555555544444433
No 338
>PHA00728 hypothetical protein
Probab=39.83 E-value=1e+02 Score=31.02 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHH--HHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLAL-----------LYSSV--GRNADA 1309 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~-----------~~~~~--~~~~~~ 1309 (1385)
.+..|+.+-.+|++.|.+++..+.....+. +.=...+..=+....+.+.+|-+ +..-+ .=.|..
T Consensus 6 eveql~keneelkkkla~leal~nn~~~~~---~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnqisLILtAfEfar 82 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNNESAEE---DEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQISLILTAFEFAR 82 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCchh---hhhHHHhcCCceehhHHHHHhcCCccceEEecCCchhhHHHHHHHhh
Confidence 456677777888888888776665432111 11111222222222333333221 11111 124678
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 000624 1310 LAQYFGEDPARCPFEQVVSTLLNFVKMFV 1338 (1385)
Q Consensus 1310 l~~yFGEdp~~~~~eeff~~l~~Fi~~fk 1338 (1385)
|-.||||.+.. -|.+|...++
T Consensus 83 LP~YFgEePv~--------ELae~A~kLK 103 (151)
T PHA00728 83 LPAYFGEEPVT--------ELAEFAHKLK 103 (151)
T ss_pred chhhhCCccHH--------HHHHHHHHHH
Confidence 89999998732 4666666654
No 339
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=39.78 E-value=69 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCCcceEEeEEEEeeccccCCC-CcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1385)
.....|+++=|.-++++..+.. +.|.||++|+-.
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~ 47 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL 47 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe
Confidence 3456788888888999988875 779999999753
No 340
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.75 E-value=6.3e+02 Score=28.89 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMF 1337 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~f 1337 (1385)
.++.=+..++.++...+..|+++.+..+.=+.-|-.+ ..++|-..|..|+..-
T Consensus 163 ~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~e----r~~dfk~~l~~fles~ 215 (234)
T cd07664 163 QAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKE----RVKDFKTVIIKYLESL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777766655555432 1234444444444443
No 341
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.72 E-value=2.7e+02 Score=36.90 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred cHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1235 SLEASTKIQLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1235 ~l~~Askv~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
+-+...+.+|..++.+.+.|+..+..+.+..
T Consensus 453 ~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR 483 (697)
T PF09726_consen 453 NNERSLKSELSQLRQENEQLQNKLQNLVQAR 483 (697)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777776666655443
No 342
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=39.71 E-value=6.2e+02 Score=28.81 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhhCccccCCccc
Q 000624 1210 TLMHYLCKVLAEKLPELLGFPKD 1232 (1385)
Q Consensus 1210 TLLhyl~k~l~ek~pell~f~~e 1232 (1385)
+|++-|+.-+...+|.+.+|..-
T Consensus 8 ~l~q~~~~d~k~s~P~~~d~v~k 30 (231)
T cd07643 8 GLFQAIINDMKGSYPLWEDFVSK 30 (231)
T ss_pred HHHHHHHHHhccCCccHHHHHHH
Confidence 45555555555556666555443
No 343
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=39.41 E-value=1.8e+02 Score=29.24 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=46.1
Q ss_pred eEEeEEEEeeccccCC-CCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEE
Q 000624 202 LTLDCVILRVIPNFDG-EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
|.+.-+.-++++..+. .+.|.||+.|+-.+ +.++.|....+.+.-... +.+.|++... ...+.|.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~kt~~P~Wn---E~F~f~v~~~-~~~l~~~v 68 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEKSLCPFFG---EDFYFEIPRT-FRHLSFYI 68 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEECCCCCccC---CeEEEEcCCC-CCEEEEEE
Confidence 3445455566776532 35689999998743 224444322222221111 2355554321 23566777
Q ss_pred EecCCcccccceEEEEEeeccccc
Q 000624 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
++.+. ..+...|-++-|...-+.
T Consensus 69 ~d~~~-~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 69 YDRDV-LRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred EECCC-CCCCceEEEEEEEHHHcc
Confidence 77653 334456667666655544
No 344
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=39.40 E-value=71 Score=30.83 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000624 1343 ENCRQLEFERKKAEKAVENEKLKT 1366 (1385)
Q Consensus 1343 en~k~~e~Ekkk~~keae~ek~~~ 1366 (1385)
|.+...|+|++++++|.++||++-
T Consensus 50 EER~K~E~~~q~r~rES~~Er~K~ 73 (121)
T PF10669_consen 50 EERSKKEEKRQKRNRESKRERQKF 73 (121)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhH
Confidence 333334444444555555555544
No 345
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.24 E-value=5.9e+02 Score=30.92 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 000624 1291 GEVRSLALLYSSVGR 1305 (1385)
Q Consensus 1291 ~~l~~L~~~~~~~~~ 1305 (1385)
.++..|.+.+.+++.
T Consensus 151 trl~~l~~qr~ql~a 165 (499)
T COG4372 151 TRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 346
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.17 E-value=7e+02 Score=33.69 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.1
Q ss_pred ccccccc
Q 000624 975 PYHWLKL 981 (1385)
Q Consensus 975 ~LhW~kI 981 (1385)
.|-|.+|
T Consensus 8 ~Le~~~i 14 (782)
T PRK00409 8 VLEFNKI 14 (782)
T ss_pred hCCHHHH
Confidence 3444444
No 347
>PF15605 Toxin_52: Putative toxin 52
Probab=39.16 E-value=1.3e+02 Score=29.62 Aligned_cols=53 Identities=25% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1248 AEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLY 1300 (1385)
Q Consensus 1248 ~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~ 1300 (1385)
.+||++..+||.++...++.+-.+...++.-++.+..-+.+|..-++.+++++
T Consensus 49 lqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 49 LQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888899998888888777766566666666666666665555555443
No 348
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=39.13 E-value=1.1e+02 Score=31.18 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 198 LDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
....|.+.-|.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~ 45 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLY 45 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEE
Confidence 345688888888889888777789999999864
No 349
>PRK14155 heat shock protein GrpE; Provisional
Probab=38.83 E-value=4e+02 Score=29.93 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQE 1264 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~e 1264 (1385)
.+.+++.+++..+.++..+
T Consensus 24 ~le~e~~elkd~~lR~~Ae 42 (208)
T PRK14155 24 ALKAEVAALKDQALRYAAE 42 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 350
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=38.65 E-value=5.7e+02 Score=32.94 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000624 1130 RVFSFKIQFQ----TQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILS 1174 (1385)
Q Consensus 1130 ~~l~Fk~~f~----~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~ 1174 (1385)
+|+.|...+. .+-.++.+.|..+-.|+..|.+=..--.+.++.|.
T Consensus 195 rcI~~GR~y~~g~~g~~~dl~EAlR~LG~aLHtLEDf~AHSNy~ELaL~ 243 (606)
T PF07217_consen 195 RCIHLGRRYTSGRSGNEEDLYEALRLLGQALHTLEDFSAHSNYCELALI 243 (606)
T ss_pred HHHHHhhhhcccccCCchhHHHHHHHHHhhHhHHhhhhhhhhHHHHHHH
Confidence 5566666655 33456777777777777777664444444444443
No 351
>PF14678 FANCI_S4: FANCI solenoid 4; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=38.61 E-value=79 Score=36.53 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1271 DGEVSGNFCKLLKEFLSYAEGEVRSLALLYS----SVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1271 d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~----~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
.|...|.|.+.+..|+.....-++-.-..+. ..-..|.+|++.-|- ++...+..|+.-......|+.
T Consensus 114 ~G~~~d~lLK~l~klY~~Lt~l~K~~~~~~~~~~~~~~~~FekLvklsg~--------~Lt~~~Y~fItyvq~~~~e~~ 184 (256)
T PF14678_consen 114 PGSCSDKLLKLLTKLYTLLTNLVKYYIQVCSSKQGAPSPKFEKLVKLSGK--------HLTPNVYSFITYVQENQNEEL 184 (256)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-----HHHHHHHTTHHH--------HTHHHHHHHHHHHHHHH----
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHhcc--------cccHHHHHHHHHHHHhhhccc
Confidence 3444566666665555554333332222211 233444555444332 355667777777665554443
No 352
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=38.37 E-value=1.4e+02 Score=29.82 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=46.5
Q ss_pred EEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccccccCCEEEEEEecC
Q 000624 206 CVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLD 284 (1385)
Q Consensus 206 ~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~ 284 (1385)
.|.-++++..+..+.|.||++|+-..... .....++.|....++.. .|. ..+.|+......-.+.|+||+.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~wn----e~f~f~~~~~~~~~l~~~V~d~d 78 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDFV----TTFTVDYYFEEVQKLRFEVYDVD 78 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCce----EEEEEEEEeEeeeEEEEEEEEec
Confidence 35556677666667899999999764210 00111222221111111 111 12444432233346888888876
Q ss_pred C---cccccceEEEEEeeccccc
Q 000624 285 S---DQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 285 ~---~~~~~~~~Fr~~FnT~FI~ 304 (1385)
. ..+....|.++.+...-+.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~ 101 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIV 101 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHh
Confidence 4 1344556666666555443
No 353
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=38.29 E-value=6.2e+02 Score=28.45 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSL 1296 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L 1296 (1385)
..+++++.+.+.|+.-+.++...... .-+.|-..++............+
T Consensus 46 k~rA~LNKl~k~id~~RK~ikk~~~~--P~~~Fe~~~K~l~~~i~~~~~~I 94 (215)
T PF07083_consen 46 KDRAELNKLKKAIDDKRKEIKKEYSK--PIKEFEAKIKELIAPIDEASDKI 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665543332 22455555554444443333333
No 354
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.26 E-value=5.5e+02 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 000624 1248 AEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1248 ~~e~~~l~k~L~kl~~el 1265 (1385)
..++.+.++.+..+.+++
T Consensus 80 ~~e~~~~~~~l~~l~~el 97 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEEL 97 (191)
T ss_pred hhhHHhHHHHHHHHHHHH
Confidence 334444444444444444
No 355
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=38.14 E-value=64 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 000624 1163 IKLKRIMQTILSLGNALNHG 1182 (1385)
Q Consensus 1163 ~~L~~lL~~IL~lGN~LN~G 1182 (1385)
..+..+..-|..|=|.|+..
T Consensus 228 ~~~~~l~~~i~~LW~~L~~~ 247 (619)
T PF03999_consen 228 EKLQELREKIEELWNRLDVP 247 (619)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 34666666666666776644
No 356
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.11 E-value=5.7e+02 Score=27.97 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
|+.+...+..+..++.++...+. ..|...|++++..+.. ++.+-.......-.|..+..|.
T Consensus 63 l~~~~~~~~~~s~~~~~l~~~~~---------~~f~~~Lkd~~~y~~s-~k~~lk~R~~kq~d~e~l~e~l 123 (185)
T cd07628 63 FKIFSESLSQFSTSLRVLNKYTD---------ENYLTSLKDLLHYILS-LKNLIKLRDQKQLDYEELSDYL 123 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 33444445555555555443322 4577777777666643 4555566666667777787777
No 357
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=38.04 E-value=7e+02 Score=28.97 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000624 1330 LLNFVKMFVLAH 1341 (1385)
Q Consensus 1330 l~~Fi~~fkka~ 1341 (1385)
|.+.+..|....
T Consensus 274 L~~~~~~l~~~~ 285 (296)
T PF13949_consen 274 LLEILNKLQQKV 285 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 358
>PHA03246 large tegument protein UL36; Provisional
Probab=38.02 E-value=1.8e+03 Score=33.63 Aligned_cols=16 Identities=6% Similarity=-0.222 Sum_probs=10.6
Q ss_pred cccccCCEEEEEEecC
Q 000624 269 HCHIQGDVVLECISLD 284 (1385)
Q Consensus 269 ~~~v~GDV~i~~~h~~ 284 (1385)
++...||.+..|=-.+
T Consensus 219 avyr~gD~~YIFDPHg 234 (3095)
T PHA03246 219 GVYRSEDGIYIFDPHG 234 (3095)
T ss_pred EEEEcCCeeEEeCCCC
Confidence 5566788887775444
No 359
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=38.01 E-value=2.5e+02 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=7.4
Q ss_pred HHHHHHHHhCCCC
Q 000624 1306 NADALAQYFGEDP 1318 (1385)
Q Consensus 1306 ~~~~l~~yFGEdp 1318 (1385)
.+..+..|-..||
T Consensus 7 w~~~~v~~vAkdP 19 (74)
T PF15086_consen 7 WASYIVEWVAKDP 19 (74)
T ss_pred HHHHHHHHHHcCh
Confidence 3444566666665
No 360
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.97 E-value=3.8e+02 Score=28.67 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
.+...+.+.+..+++.+....++.+..++.
T Consensus 53 eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~ 82 (154)
T PRK06568 53 DAALLFEQTNAQIKKLETLRSQMIEESNEV 82 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444444444333
No 361
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.90 E-value=8.9e+02 Score=30.14 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEF-ERKKAEKAVENEKLKT 1366 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~-Ekkk~~keae~ek~~~ 1366 (1385)
.+..+..+.+..++-++.++.|..-..--+..........-+.+|+...+|-.+|..|-.+. .+-++++..+.++..+
T Consensus 350 leqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 350 LEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444433333444443333332333445667778899999999998888774332 2223344444455544
No 362
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.80 E-value=2.8e+02 Score=31.58 Aligned_cols=23 Identities=13% Similarity=-0.081 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVG 1304 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~ 1304 (1385)
-..||.++..++..|...+..-.
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~ 52 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHV 52 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555444333
No 363
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=37.71 E-value=5.6e+02 Score=34.39 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
.+.+++++++.|.++...-.+++.-|++
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~~d 449 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKYDD 449 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555544
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.67 E-value=7.7e+02 Score=34.37 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000624 1278 FCKLLKEFLSYAEGEVRSLALL 1299 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~L~~~ 1299 (1385)
..+++.+|+.+.++.+..|.+.
T Consensus 1018 Aa~il~e~~sd~~~av~ll~ka 1039 (1265)
T KOG1920|consen 1018 AAKILLEYLSDPEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHHhcCHHHHHHHHhhH
Confidence 3456777777777766665543
No 365
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.60 E-value=5.6e+02 Score=30.65 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
..++.=+.....++...+..+.+++....++
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l 242 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEEL 242 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444444444433333
No 366
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=37.51 E-value=3.7e+02 Score=30.64 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNA 1307 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~ 1307 (1385)
+...+++.+..|...-+.+
T Consensus 123 a~~~leKAK~~Y~~~c~e~ 141 (234)
T cd07652 123 AEAAAEKAKARYDSLADDL 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 367
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=37.41 E-value=1e+03 Score=30.58 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000624 1329 TLLNFVKMFVLAHEENCRQ 1347 (1385)
Q Consensus 1329 ~l~~Fi~~fkka~een~k~ 1347 (1385)
.|..-+..|+..|++..++
T Consensus 258 ~~~~~~~~~~~qh~~~~q~ 276 (757)
T KOG4368|consen 258 AFQQQIQTLKTQHEEFVQQ 276 (757)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666543
No 368
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.32 E-value=3.6e+02 Score=35.15 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=15.2
Q ss_pred ccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1226 LLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1226 ll~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
...+..++..++.+ ++...++++.+...++++..+.
T Consensus 134 ~~k~~~~~~k~~~~----i~~~~~~y~~~~~~~~~vr~~w 169 (611)
T KOG2398|consen 134 KEKRKKELAKAELK----IKEAREEYRSLVAKLEKVRKDW 169 (611)
T ss_pred ccchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444332 2333344444444444444443
No 369
>PRK04654 sec-independent translocase; Provisional
Probab=37.26 E-value=2e+02 Score=32.16 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp 1318 (1385)
+.+++.|+.+....+..-.+|++...+++...+.+..|++.+.
T Consensus 57 ~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~~~ 99 (214)
T PRK04654 57 EELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSRDI 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3445555555444444444555555666666666667777654
No 370
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.09 E-value=2.5e+02 Score=29.70 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1284 EFLSYAEGEVRSLALLYSSVGRNADALAQ 1312 (1385)
Q Consensus 1284 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1312 (1385)
.-+..+..++..|++.++.++..|..+..
T Consensus 72 k~~~~~~eelerLe~~iKdl~~lye~Vs~ 100 (157)
T COG3352 72 KQLQDIKEELERLEENIKDLVSLYELVSR 100 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777766666666543
No 371
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=8.3e+02 Score=30.78 Aligned_cols=239 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCcchhhhhhhhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHH
Q 000624 1037 KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFF 1116 (1385)
Q Consensus 1037 k~~~i~lLD~KRa~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFl 1116 (1385)
....+.+.-..+.++..=-+..+.-.+.|...+.+ .+..+.......+..+.....+.+.+-.-.-+--.=...+|-+
T Consensus 242 ~q~q~~i~~~~k~~~~~a~~~~~p~~~~~~~q~~~--~~~~~n~~~t~~~afv~~~~~q~e~~L~~kP~gVd~~~W~QA~ 319 (508)
T KOG3091|consen 242 SQQQQVIYPIAKTQGFVAGRIPAPQSLNDQVQKTL--KEWLLNTPKTRVLAFVYLSVAQTEAYLETKPAGVDQRIWRQAM 319 (508)
T ss_pred cccceEeechhhcccccccCCCcchhHHHHHHHHH--HHHhhcCCcchhhhhhccCHHHHHHHhcCCCCCcCHHHHHHHh
Q ss_pred -----------HHHhCCCcHHHHHHHHHH-HHHHHhhHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHhcccc
Q 000624 1117 -----------LELMKVPRVESKLRVFSF-KIQFQTQVSDLRTSLNIIN-----SASEEVRNSIKLKRIMQTILSLGNAL 1179 (1385)
Q Consensus 1117 -----------l~L~~Iprl~~RL~~l~F-k~~f~~~v~~l~~~L~~v~-----~A~~eLr~S~~L~~lL~~IL~lGN~L 1179 (1385)
.-|...+.+..|+++-.- ..++..+|+.|.+.+..+. .+.+.++--.++.+|=+-||.++=.+
T Consensus 320 ~dnp~s~kliPVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 320 KDNPPSNKLIPVPVVGFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred hcCCCcccccceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCccceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHH
Q 000624 1180 NHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLE 1259 (1385)
Q Consensus 1180 N~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~ 1259 (1385)
-.-..| ||.|.-=. +.|+.|+-.|+.-.++= .+|...++.|...++
T Consensus 400 eilr~~----G~~L~~~E-------------------E~Lr~Kldtll~~ln~P-----------nq~k~Rl~~L~e~~r 445 (508)
T KOG3091|consen 400 EILRKR----GYALTPDE-------------------EELRAKLDTLLAQLNAP-----------NQLKARLDELYEILR 445 (508)
T ss_pred HHHhcc----CCcCCccH-------------------HHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1260 KVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1312 (1385)
Q Consensus 1260 kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1312 (1385)
... .-........+++.-...|++++..-++.+..|-+.++...+..+..+.
T Consensus 446 ~q~-~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~l~ 497 (508)
T KOG3091|consen 446 MQN-SQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIKHQLI 497 (508)
T ss_pred hhc-chhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 372
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.86 E-value=5.4e+02 Score=33.87 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhc
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTAS 1268 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~s 1268 (1385)
+..+.+++.++...+..+.+.+...
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444555555555565555555543
No 373
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=36.74 E-value=4e+02 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1255 SKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS 1301 (1385)
Q Consensus 1255 ~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~ 1301 (1385)
...|+++...++.. .| ...+++.|..-...+...++++.+.+.
T Consensus 12 v~~l~k~~~~lGt~-~D---s~~lR~~i~~~~~~~~~l~k~~~~~l~ 54 (102)
T PF14523_consen 12 VSQLEKLVNQLGTP-RD---SQELREKIHQLIQKTNQLIKEISELLK 54 (102)
T ss_dssp HHHHHHHHHHH-SS-S-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-cc---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555533 22 256666666555555544444444433
No 374
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.71 E-value=9.4e+02 Score=32.19 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=37.6
Q ss_pred CCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCC----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1228 GFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDG----EVSGNFCKLLKEFLSYAEGEVRSLALLYSSV 1303 (1385)
Q Consensus 1228 ~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~----~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~ 1303 (1385)
+|.+||..+.. .++.|+..++++++.+++.+..+....+.. ...+.=.+.+++-|..-.++++++-+..+++
T Consensus 636 ~~~~EL~~~~~----~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 636 EFKKELERMKD----QLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544433 356677777777777777665555322111 1234444555555555555555544444443
No 375
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=36.56 E-value=5e+02 Score=26.85 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1313 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1313 (1385)
.+..+++.|...++.+.+.=. ..| ...+.-.+.|+.++.++.++|..+.+.+..+..-
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~---------~r~-~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEE---------ARY-NEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 345556666666666554311 122 3445556788889999999999888888777543
No 376
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=36.48 E-value=1.2e+02 Score=31.54 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCCCCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEE--EeCCCCCccee-eecccCceeEEEcccc
Q 000624 194 EWPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVL--FSTPKRSKLVR-HYKQADCELVKIDIHC 270 (1385)
Q Consensus 194 ~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l--~st~~~~~~~~-~y~~~d~~~i~~~~~~ 270 (1385)
.+-.....|.+.=|..++++..+..+.|.||++|+-... .++.+ +.|....+... .|. +.|.|++..
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~------~~~~~~~~kT~v~~~t~nPvfn----EtF~f~i~~ 78 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS------DGQEISKSKTSIRRGQPDPEFK----ETFVFQVAL 78 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC------CCcceeeccceeecCCCCCcEe----eeEEEECCH
Confidence 333455678888888899988887788999999987421 11112 11211111111 221 335565532
Q ss_pred c-ccC-CEEEEEEecCCcccccceEEEEEeecc
Q 000624 271 H-IQG-DVVLECISLDSDQEREEMMFRVMFNTA 301 (1385)
Q Consensus 271 ~-v~G-DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1385)
. +.. .+.|.+++.+. ..+++.|.++.|.-.
T Consensus 79 ~~l~~~~L~~~V~~~~~-~~~~~~iG~v~l~~~ 110 (138)
T cd08408 79 FQLSEVTLMFSVYNKRK-MKRKEMIGWFSLGLN 110 (138)
T ss_pred HHhCccEEEEEEEECCC-CCCCcEEEEEEECCc
Confidence 2 221 34456677653 445667777766543
No 377
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=36.43 E-value=3.8e+02 Score=26.87 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=56.4
Q ss_pred EEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEccccc--ccCCEEEEEEecC
Q 000624 208 ILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH--IQGDVVLECISLD 284 (1385)
Q Consensus 208 ~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~--v~GDV~i~~~h~~ 284 (1385)
..++++. ..+.|.||++|+-.+. .+.|....+... .|. +.+.|.+.-. -...+.|+||+.+
T Consensus 4 ~a~~L~~--~~g~~Dpyv~v~~~~~----------~~kT~v~~~~~nP~Wn----e~f~f~~~~~~~~~~~l~~~v~d~~ 67 (127)
T cd08373 4 SLKNLPG--LKGKGDRIAKVTFRGV----------KKKTRVLENELNPVWN----ETFEWPLAGSPDPDESLEIVVKDYE 67 (127)
T ss_pred EeeCCcc--cCCCCCCEEEEEECCE----------eeecceeCCCcCCccc----ceEEEEeCCCcCCCCEEEEEEEECC
Confidence 3455555 2467999999987541 122221111111 121 2245544221 2345677788765
Q ss_pred CcccccceEEEEEeecccccCCeEEeeccc-CcccccCCCCCCCCcEEEEEEEecCCCC
Q 000624 285 SDQEREEMMFRVMFNTAFIRSNILMLNRDE-IDILWNSKDLFSKEFRAEVLFSEMDAAT 342 (1385)
Q Consensus 285 ~~~~~~~~~Fr~~FnT~FI~~n~l~l~k~e-LD~~~~~k~~fp~dF~vel~F~~~~~~~ 342 (1385)
. ......|.++.|.-.=+..+.....+.. +|. ..+.......+++.|.+.+...
T Consensus 68 ~-~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 68 K-VGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS---NGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred C-CCCCceEEEEEEEhhHcccCCceEEEEeCcCC---CCCcccEEEEEEEEEeCCCCcc
Confidence 3 2344567777777554432221111111 121 1122345677788887776543
No 378
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.37 E-value=6.6e+02 Score=33.86 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1284 EFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1284 ~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
....+++...++|++.++++++..++
T Consensus 536 ~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 536 KLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433333
No 379
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=36.31 E-value=7.3e+02 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=17.3
Q ss_pred HHHHHHhcccccCCCCCCccceeeccc-hhhh
Q 000624 1169 MQTILSLGNALNHGTARGSAVGFRLDS-LLKL 1199 (1385)
Q Consensus 1169 L~~IL~lGN~LN~Gt~rg~A~GFkL~s-L~KL 1199 (1385)
+.+.=-++-.+..+..-|.+.||=|.. ++.+
T Consensus 223 ~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~ 254 (764)
T TIGR02865 223 FGFAGLLGGIFKELGKIGTGIGYLVGFLILAF 254 (764)
T ss_pred HHHHHHHHHhhccCCcceeeHHHHHHHHHHHH
Confidence 333333444445555567788887776 3344
No 380
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=36.28 E-value=1.3e+02 Score=33.66 Aligned_cols=66 Identities=30% Similarity=0.331 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHhh---ccCcchh
Q 000624 1303 VGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEEN-CRQLEFERKK-AEKAVENEKLKT---QKGQSEH 1373 (1385)
Q Consensus 1303 ~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een-~k~~e~Ekkk-~~keae~ek~~~---~k~~~~~ 1373 (1385)
+.+.+.+-+.-||-. .|++--+-.+|-++|.+|.|.- ..|.|+|+-| --++++.+|+.+ ..|++++
T Consensus 150 v~~~lt~rA~~Fgl~-----LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~a 220 (271)
T KOG3083|consen 150 VSNDLTERAATFGLI-----LDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKA 220 (271)
T ss_pred HHHHHHHHHHhhCee-----echhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHH
Confidence 444455556667764 3455557778999999998642 1233344433 223344444433 4455443
No 381
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=36.19 E-value=3.9e+02 Score=35.23 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhCC
Q 000624 1301 SSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1301 ~~~~~~~~~l~~yFGE 1316 (1385)
..+...+..++.-||-
T Consensus 448 ~~v~~~l~~~l~ILGl 463 (651)
T PTZ00399 448 RSVAQYVTKILSIFGL 463 (651)
T ss_pred HHHHHHHHHHHhcccC
Confidence 3455556666667775
No 382
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.18 E-value=6.6e+02 Score=28.09 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1136 IQFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1136 ~~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
..+.+.+.+|+..++++.+.|..+.++
T Consensus 4 ~~~E~~~~~l~~~~~Kl~K~~~~~~~a 30 (202)
T cd07606 4 QELEGSADELRDRSLKLYKGCRKYRDA 30 (202)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888887653
No 383
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.16 E-value=7.5e+02 Score=28.74 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1315 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1315 (1385)
..|.+++..-+...+..+..|+....++.+...-|..|--
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD 112 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD 112 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677777777777778888887777777777777764
No 384
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=36.05 E-value=8.4e+02 Score=29.47 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000624 1125 VESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1125 l~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eL 1159 (1385)
++.-++++-|...+...+...+..-..+..+++.+
T Consensus 72 Fd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~ 106 (336)
T PF05055_consen 72 FDSSLEASDFCEALLKCIHRARDNYLPIRRALKQF 106 (336)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 45555666666666666666666666666666655
No 385
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=36.04 E-value=6.7e+02 Score=28.19 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVVQE 1264 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~e 1264 (1385)
+...+.++.++.+.++++.+.
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ 24 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKE 24 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554433
No 386
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.73 E-value=3.3e+02 Score=39.36 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Q 000624 1133 SFKIQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNA 1178 (1385)
Q Consensus 1133 ~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~ 1178 (1385)
++-.+|.+++.++...|.....|-..+.+-..-..-|+-.|..=||
T Consensus 887 l~~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~ 932 (1486)
T PRK04863 887 LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQS 932 (1486)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455688889999999988888887776655555555555554333
No 387
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=35.69 E-value=28 Score=40.73 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 000624 101 ETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1385)
Q Consensus 101 ~~l~~~c~~~~~WL~~d~~NVvvvHCk~ 128 (1385)
..+-.++++|.+||.++++-||+|+++.
T Consensus 77 ~~l~~~L~~i~~FL~~~p~EvVil~~~~ 104 (281)
T cd08620 77 QGFDTFLQDVVTFLKANPTEIVVVHITW 104 (281)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 4577999999999999999999999974
No 388
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=35.59 E-value=9e+02 Score=29.53 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhCCCCC
Q 000624 1293 VRSLALLYSSVGRNA-DALAQYFGEDPA 1319 (1385)
Q Consensus 1293 l~~L~~~~~~~~~~~-~~l~~yFGEdp~ 1319 (1385)
..++++.+.+..+.| +...+|..+|..
T Consensus 347 ~~e~Eekl~E~nee~~~r~ee~~a~dea 374 (672)
T KOG4722|consen 347 DAEVEEKLLEKNEEFLNRFEEFLAEDEA 374 (672)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344444444444444 336666777653
No 389
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=35.47 E-value=2.3e+02 Score=30.24 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred CcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcc--cccccC-
Q 000624 199 DRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDI--HCHIQG- 274 (1385)
Q Consensus 199 ~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~--~~~v~G- 274 (1385)
...|.++-+.-++++..+..+.|.||++|+-... ......+.|....+... .|. ..|.|.. ...+..
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-----~~~~~~~kT~vi~~t~nP~Wn----E~f~f~~~~~~~l~~~ 96 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-----KSKKSKQKTPVVKKSVNPVWN----HTFVYDGVSPEDLSQA 96 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-----CCCCcceeCCccCCCCCCCCC----CEEEEecCCHHHhCCC
Confidence 3568888888888988877778999999975321 11122333432222221 221 2245542 112333
Q ss_pred CEEEEEEecCCcccccceEEEEEeeccccc
Q 000624 275 DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
.+.|.|++.+. ..+...|.++.|+-+=+.
T Consensus 97 ~L~i~V~d~d~-~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 97 CLELTVWDHDK-LSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEeCCccc
Confidence 36778888764 344667888877765544
No 390
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=35.44 E-value=7.2e+02 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1281 LLKEFLSYAEGEVRSLALLYSSVGRN 1306 (1385)
Q Consensus 1281 ~l~~Fl~~a~~~l~~L~~~~~~~~~~ 1306 (1385)
.|..-++.|...+..++..|+.....
T Consensus 408 ~L~~~l~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 408 KLKEHLEKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544433
No 391
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.43 E-value=6.3e+02 Score=27.66 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHHHh
Q 000624 1250 EMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~ 1266 (1385)
.++++..+|+.+++.+.
T Consensus 18 ~~~~~~~~l~~l~~ai~ 34 (204)
T PF04740_consen 18 SLKELKEQLESLQKAIN 34 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 392
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=35.36 E-value=3.1e+02 Score=36.45 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1293 VRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1293 l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
++.|...|..+.+..++|..+++.
T Consensus 254 Lr~l~~~y~~t~~lv~~L~~~~~~ 277 (710)
T PF07393_consen 254 LRTLHGLYSQTKKLVDDLKEFFSG 277 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556777888888888888888554
No 393
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=35.25 E-value=2.6e+02 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=21.0
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecC
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQD 231 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~ 231 (1385)
|++.-|.-++++..+..+.|.||++|+..+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~ 31 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG 31 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC
Confidence 455555556676666556799999999753
No 394
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=35.19 E-value=2e+02 Score=28.89 Aligned_cols=29 Identities=14% Similarity=-0.102 Sum_probs=20.3
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
|.++-+.-++++..+..+.|.||++|+-.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~ 30 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD 30 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC
Confidence 44555555667766655779999999964
No 395
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.14 E-value=1.4e+03 Score=31.63 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1246 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1246 ~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
....+..++.+.+.+++..|....+. -.+.=++.+..+++..+.+++.++..-..+.+..+++
T Consensus 778 ~~a~k~~ef~~q~~~l~~~l~fe~~~--d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 778 EFAKKRLEFENQKAKLENQLDFEKQK--DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheecc--cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 34445556666666666555433221 1133456777777777777777766555555554444
No 396
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=34.90 E-value=1.3e+02 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=26.5
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEe
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYG 229 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~ 229 (1385)
+....|.+.-+.-++++..+..+.|.||++|+-
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l 44 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWL 44 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEE
Confidence 345668888888888888776778999999985
No 397
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=34.89 E-value=92 Score=35.23 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHh---------------hH-----HHH------HHH-HHHHHhcccccCCCCCCcc
Q 000624 1136 IQFQTQVSDLRTSLNIINSASEEVRN---------------SI-----KLK------RIM-QTILSLGNALNHGTARGSA 1188 (1385)
Q Consensus 1136 ~~f~~~v~~l~~~L~~v~~A~~eLr~---------------S~-----~L~------~lL-~~IL~lGN~LN~Gt~rg~A 1188 (1385)
.+...+++..+..+..|.....++.. ++ +.. .+| ++.+..|+-+..++.-|.|
T Consensus 10 ~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~G~a 89 (223)
T cd07614 10 KEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESNFGDA 89 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCChHHHH
Q ss_pred ceeeccchhhhhccccc---CCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHH-HHHHhHHHHHHH
Q 000624 1189 VGFRLDSLLKLTDTRAR---NNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQ-AISKGLEKVVQE 1264 (1385)
Q Consensus 1189 ~GFkL~sL~KL~dtKs~---d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~-~l~k~L~kl~~e 1264 (1385)
-.--=+...||.+.+.. .-+.++|+-|...+...+.++..-.+.|. ..+++++..+.... .....|+..+.+
T Consensus 90 L~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe----~rRLdyD~~K~r~~k~~eeelr~a~ek 165 (223)
T cd07614 90 LLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLE----GRRLDFDYKKKRQGKIPDEELRQAMEK 165 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCCchHHHHHHHHH
Q ss_pred HhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1265 LTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1265 l~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+..+. +.....|..|++.=-+.++.|.++.+.-.+-++...+++.+
T Consensus 166 Fees~------E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~ 211 (223)
T cd07614 166 FEESK------EVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDE 211 (223)
T ss_pred HHHHH------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 398
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.85 E-value=2.3e+02 Score=34.97 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCC----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1248 AEEMQAISKGLEKVVQELTASEND----GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1248 ~~e~~~l~k~L~kl~~el~~se~d----~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
...++++...++++.+++...... ....+....++++-.+..++.+.+.+++..++++..+.|+-|+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 344555555565555554432110 0012445555555555555555555666666666666665544
No 399
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.79 E-value=1.4e+03 Score=31.55 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=12.5
Q ss_pred HHHHHHHHhhccCcchhhhhccc
Q 000624 1357 KAVENEKLKTQKGQSEHLVQNPL 1379 (1385)
Q Consensus 1357 keae~ek~~~~k~~~~~~~~~~l 1379 (1385)
-+.-++....+|-+-..++...-
T Consensus 1401 l~~fk~~Lnndk~di~qLi~~La 1423 (1439)
T PF12252_consen 1401 LARFKTDLNNDKYDIDQLISKLA 1423 (1439)
T ss_pred HHHHHHhhccCcccHHHHHHHHH
Confidence 33344555556666666665433
No 400
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=34.76 E-value=7e+02 Score=27.98 Aligned_cols=11 Identities=9% Similarity=-0.097 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 000624 1149 LNIINSASEEV 1159 (1385)
Q Consensus 1149 L~~v~~A~~eL 1159 (1385)
-..+..|+..+
T Consensus 19 ~~kY~~al~~~ 29 (219)
T PF08397_consen 19 GKKYQKALRAM 29 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 401
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=34.67 E-value=55 Score=34.14 Aligned_cols=22 Identities=5% Similarity=0.082 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000624 1329 TLLNFVKMFVLAHEENCRQLEF 1350 (1385)
Q Consensus 1329 ~l~~Fi~~fkka~een~k~~e~ 1350 (1385)
.-.+|+.-|.+...+-++.+..
T Consensus 19 ~R~eyLTGFhKRK~~Rrk~Aqe 40 (137)
T PF09805_consen 19 ARREYLTGFHKRKKQRRKKAQE 40 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888898887666554433
No 402
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=34.53 E-value=1.2e+03 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=15.8
Q ss_pred HHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHHHHHHH
Q 000624 1308 DALAQYFGEDPARCPFE---QVVSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1308 ~~l~~yFGEdp~~~~~e---eff~~l~~Fi~~fkka~een 1344 (1385)
..++.+|+..-....++ .+|..+..|....--.+++.
T Consensus 200 ~~~~~k~n~~q~~~~~q~iP~i~d~~~~l~~~~~l~~~~i 239 (640)
T KOG3565|consen 200 LSLLRKFNHVQKQYYFQFIPLIVDSLQRLEERRGLRLEGI 239 (640)
T ss_pred HHHHHHhcCccccCCcccccHHHHHHHHHHHHhhhhhHHH
Confidence 34455555443322211 34555555555443334443
No 403
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=34.46 E-value=1.8e+02 Score=29.60 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=47.6
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEccccc-c-cC
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCH-I-QG 274 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~-v-~G 274 (1385)
+....|.+.-|.-++++ ..++|-||++||-... .+ +.-+.|....+.+.-+-. +.+.|++... + ..
T Consensus 11 ~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~----~k--~~k~kT~v~rktlnPvfn---E~f~F~v~~~~l~~~ 78 (118)
T cd08677 11 KQKAELHVNILEAENIS---VDAGCECYISGCVSVS----EG--QKEAQTALKKLALHTQWE---EELVFPLPEEESLDG 78 (118)
T ss_pred CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCC----cC--ccEEEcceecCCCCCccc---cEEEEeCCHHHhCCc
Confidence 44566777777777887 2467999999997421 11 111234333333322211 3366665322 2 22
Q ss_pred CEEEEEEecCCcccccceEEEEEeecc
Q 000624 275 DVVLECISLDSDQEREEMMFRVMFNTA 301 (1385)
Q Consensus 275 DV~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1385)
.+.|.+++.+. .++...|.++.+..+
T Consensus 79 tL~~~V~d~Dr-fs~~d~IG~v~l~l~ 104 (118)
T cd08677 79 TLTLTLRCCDR-FSRHSTLGELRLKLA 104 (118)
T ss_pred EEEEEEEeCCC-CCCCceEEEEEEccc
Confidence 45556666552 344455555555443
No 404
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=34.45 E-value=2.4e+02 Score=27.75 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCCceEEEecccC
Q 000624 44 LGGIVGQLREYFPEASFMVFNFREG 68 (1385)
Q Consensus 44 i~~V~~~L~~~h~~~~y~V~NLs~~ 68 (1385)
.+++.+.++.... +..|+.++..
T Consensus 6 ~~~l~~~~~~~~~--~~~iiDvR~~ 28 (113)
T cd01531 6 PAQLKGWIRNGRP--PFQVVDVRDE 28 (113)
T ss_pred HHHHHHHHHcCCC--CEEEEEcCCc
Confidence 4566666654322 3788888875
No 405
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=34.42 E-value=7.4e+02 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1290 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1290 ~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
+++++..+..|.+..+.....+.-|=++.. +....|.+|+..
T Consensus 156 eeElr~A~~kFees~E~a~~~M~n~l~~e~-----e~~~~L~~fveA 197 (223)
T cd07613 156 DEELRQALEKFDESKEIAESSMFNLLEMDI-----EQVSQLSALVQA 197 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----hHHHHHHHHHHH
Confidence 666666677777766666665555555432 334455555544
No 406
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.12 E-value=1.3e+03 Score=31.03 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=10.2
Q ss_pred chhhHHHHhhhcC
Q 000624 1006 DMSELESLFSAAA 1018 (1385)
Q Consensus 1006 D~~eLE~lF~~k~ 1018 (1385)
||-|+|+|-+...
T Consensus 384 DFlEmEkLA~~s~ 396 (769)
T PF05911_consen 384 DFLEMEKLAALSR 396 (769)
T ss_pred HHHHHHHHHhcCC
Confidence 6889999888654
No 407
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.11 E-value=7e+02 Score=27.78 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000624 1288 YAEGEVRSLALLYSSVGRNAD 1308 (1385)
Q Consensus 1288 ~a~~~l~~L~~~~~~~~~~~~ 1308 (1385)
..+.++..|+-.++.+...|.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~ 117 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFE 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 408
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=34.06 E-value=8.5e+02 Score=30.33 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1247 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1311 (1385)
Q Consensus 1247 L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1311 (1385)
|+.|+..-+...++++.++.... .-.+-|.+-+..|-.-...+-+.|.++++.+..|+
T Consensus 300 LR~dle~~r~~aek~~~EL~~Ek-------~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll 357 (488)
T PF06548_consen 300 LRVDLESSRSLAEKLEMELDSEK-------KCTEELDDALQRAMEGHARMLEQYADLQEKHNDLL 357 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666655321 11222333333333333344445555555555543
No 409
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=34.03 E-value=1.1e+03 Score=30.09 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHh
Q 000624 1209 MTLMHYLCKVLAE 1221 (1385)
Q Consensus 1209 ~TLLhyl~k~l~e 1221 (1385)
..||..|+..+..
T Consensus 148 ~~Ll~~isn~ii~ 160 (579)
T PF08385_consen 148 TSLLEKISNQIIQ 160 (579)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666555444
No 410
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=33.90 E-value=1.5e+03 Score=31.69 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCC
Q 000624 648 ETSPSPMFEHSSTTSTLPPPPPPPPHSFPGMSQSFVVNNSFSIPPPPPPPPPPHSFPGMAQSFVVNNSFSIPPPSSPPSF 727 (1385)
Q Consensus 648 ~~~~~p~~~~~~~~~~~~~pppppppp~~~~~~~~~~~~~~~~~~~p~~ppp~~~~~~~~~~~~~~~~~~~pp~~ppp~~ 727 (1385)
+.+|...-+++++.++-.+-=-|-.|--.+++++.|+....=+|..|.=.|-.|+-++.+..-.+.+++--|..|.=.|.
T Consensus 1439 ~~sp~~s~~ssp~~s~tsp~ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsyspt 1518 (1605)
T KOG0260|consen 1439 PASPGSSYSSSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1518 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000624 728 SRISSTSSSDKNSFSAPSPPPQPPSLSGISPTSSAKNLFSTPPPPPPPPPPSPSPFSVTSPSTSVKNSFPNPPPPPPPPS 807 (1385)
Q Consensus 728 ~~~~~~~~~~~~~~~~~pPpppppp~~~~~~~~~~~~~~~~pppppppp~p~ppp~~p~~p~~~~~~~~~~ppppppppp 807 (1385)
+.+.+|.+++..++++.=.|..|.=.+.++.=+...+.++ |..|.=.|..|.-+|.+|+-+ ..+.=.|..|.=.|.
T Consensus 1519 spsysptspsysptspsysptspsysptspsysptspsys---ptsp~ysptspsysptspsys-~~~~ysp~sp~yspt 1594 (1605)
T KOG0260|consen 1519 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYS-TSPSYSPTSPSYSPT 1594 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCcc-CCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCC
Q 000624 808 PPPSFLGTS 816 (1385)
Q Consensus 808 ppp~~~~~~ 816 (1385)
.|...+..+
T Consensus 1595 sp~ysp~sp 1603 (1605)
T KOG0260|consen 1595 SPSYSPTSP 1603 (1605)
T ss_pred CCCCCCCCC
No 411
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=33.84 E-value=4.8e+02 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=20.2
Q ss_pred eEEeEEEEeeccccCC--CCcceeEEEEEec
Q 000624 202 LTLDCVILRVIPNFDG--EGGCCPIFRIYGQ 230 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~--~~gcrP~~~Iy~~ 230 (1385)
|++.-+.-++++..+. .+.|.||+.|+..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~ 33 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVG 33 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEEC
Confidence 4455555556776665 5679999999864
No 412
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.82 E-value=4.5e+02 Score=36.50 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1275 SGNFCKLLKEFLSYAEGEVRSLAL-----LYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1275 ~d~F~~~l~~Fl~~a~~~l~~L~~-----~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
...|-.-+...+...++.+.+|-. -...+.+....||.|||-..++ |-+++.|-+|+.+
T Consensus 565 ~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN---D~iLshLiTfLND 628 (1431)
T KOG1240|consen 565 EQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN---DVILSHLITFLND 628 (1431)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc---cchHHHHHHHhcC
Confidence 345555566666666666666543 2223455689999999976544 2355666666544
No 413
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=33.49 E-value=1.5e+03 Score=31.52 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.6
Q ss_pred HHHHhhhhhc
Q 000624 1080 IDQVDNLIKF 1089 (1385)
Q Consensus 1080 ~e~le~Llk~ 1089 (1385)
-+.+..++.+
T Consensus 143 q~~~~~~~~~ 152 (1179)
T TIGR02168 143 QGKISEIIEA 152 (1179)
T ss_pred cccHHHHHcC
Confidence 3444455544
No 414
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=33.47 E-value=1e+03 Score=29.49 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 000624 1275 SGNFCKLLKEFL 1286 (1385)
Q Consensus 1275 ~d~F~~~l~~Fl 1286 (1385)
.|.|+..|+...
T Consensus 363 rd~FrtLLr~l~ 374 (590)
T COG5104 363 RDEFRTLLRKLY 374 (590)
T ss_pred HHHHHHHHHHhh
Confidence 366766555543
No 415
>PHA03378 EBNA-3B; Provisional
Probab=33.37 E-value=5.5e+02 Score=33.34 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHHH
Q 000624 99 TMETVHHFLRSSES 112 (1385)
Q Consensus 99 ~L~~l~~~c~~~~~ 112 (1385)
.-.-+++|+..++.
T Consensus 103 ~qa~viqL~hAayd 116 (991)
T PHA03378 103 TQAPVIQLVHAVYD 116 (991)
T ss_pred ccchHHHHHHHHHH
Confidence 55666677777655
No 416
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=33.14 E-value=7.8e+02 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
++.+++.+++.|.+..+....++.-+-+.. -++...|.+|+..
T Consensus 168 ~e~elr~ae~efees~E~a~~~m~~i~~~~-----~e~~~~L~~lv~A 210 (229)
T cd07616 168 AEQELRITQSEFDRQAEITRLLLEGISSTH-----AHHLRCLNDFVEA 210 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----hHHHHHHHHHHHH
Confidence 466777777777777777766666555422 2456667777665
No 417
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.89 E-value=8.1e+02 Score=29.35 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=16.0
Q ss_pred HhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHH
Q 000624 1256 KGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEV 1293 (1385)
Q Consensus 1256 k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l 1293 (1385)
+.++++.+++......+..-+.+.+.+..+++.|++.+
T Consensus 208 ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~ 245 (320)
T TIGR01834 208 KSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAY 245 (320)
T ss_pred HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHH
Confidence 44444444444433332222334444444444444433
No 418
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.66 E-value=2.2e+02 Score=36.62 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCCCC
Q 000624 1304 GRNADALAQYFGEDPAR 1320 (1385)
Q Consensus 1304 ~~~~~~l~~yFGEdp~~ 1320 (1385)
++.++.|...|+-+...
T Consensus 261 ~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 261 QNDLKRLENKYAIKSGD 277 (555)
T ss_pred HhHHHHHHHHhCCCccc
Confidence 45678888888876543
No 419
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.52 E-value=3.4e+02 Score=31.26 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 000624 1140 TQVSDLRTSLNIINSASEEV 1159 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eL 1159 (1385)
+.+.++...++.+..+++.|
T Consensus 15 ~~~~~le~r~D~~k~~~~~i 34 (248)
T cd07619 15 EDLLQVEKRLELVKQVSHST 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 420
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=32.50 E-value=3.3e+02 Score=32.28 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCCc
Q 000624 1250 EMQAISKGLEKVVQELTASENDGEV 1274 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~~se~d~~~ 1274 (1385)
.+..|...++++.++++.....|.+
T Consensus 123 ~v~~l~e~I~~~l~~~E~LG~eG~V 147 (319)
T KOG0796|consen 123 KVHELEEKIGKLLEKAEELGEEGNV 147 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 3444444555554444444444433
No 421
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.48 E-value=5.7e+02 Score=30.71 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHh
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~ 1266 (1385)
+++.|..+-+.|......+..++.
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~ 31 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQ 31 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544
No 422
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=32.44 E-value=92 Score=31.04 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
+....|.+.-|.-++++..+..+.|.||++|+-.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~ 46 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLL 46 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEc
Confidence 3446678887888888887777789999999975
No 423
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=32.28 E-value=2.2e+02 Score=34.61 Aligned_cols=10 Identities=10% Similarity=0.169 Sum_probs=4.0
Q ss_pred ChhHHHHhHh
Q 000624 1062 PLPDLMGSVL 1071 (1385)
Q Consensus 1062 ~~~ei~~aIl 1071 (1385)
+.+|...+++
T Consensus 471 tkDDaY~~FM 480 (487)
T KOG4672|consen 471 TKDDAYNAFM 480 (487)
T ss_pred cchHHHHHHH
Confidence 3344444433
No 424
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=32.26 E-value=7.8e+02 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHhccc
Q 000624 1146 RTSLNIINSASEEVRNSIK-----LKRIMQTILSLGNA 1178 (1385)
Q Consensus 1146 ~~~L~~v~~A~~eLr~S~~-----L~~lL~~IL~lGN~ 1178 (1385)
+..|..+.++|+.|.+|.+ -..+...+-.+|+.
T Consensus 15 ~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~ 52 (215)
T cd07642 15 RTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSN 52 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555566666555432 34455566677773
No 425
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=32.25 E-value=4.5e+02 Score=25.74 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=45.7
Q ss_pred eEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEcccccccCCEEEEE
Q 000624 202 LTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 202 l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
|.+.-+.=++++..+..+.|.||++|+..+. .+.|....+... .|. ..+.|.+. .+..-+.|+|
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~----------~~~T~~~~~t~nP~W~----e~f~~~~~-~~~~~l~~~v 67 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNA----------RLQTHTIYKTLNPEWN----KIFTFPIK-DIHDVLEVTV 67 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCE----------eeecceecCCcCCccC----cEEEEEec-CcCCEEEEEE
Confidence 4444455556777666677999999987531 122221111111 111 12334332 1234566777
Q ss_pred EecCCcccccceEEEEEeeccccc
Q 000624 281 ISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
++.+. ......|.++.|...-+.
T Consensus 68 ~d~~~-~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 68 YDEDK-DKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred EECCC-CCCCceeeEEEEEHHHCC
Confidence 87653 234566777777765554
No 426
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=32.17 E-value=1.5e+02 Score=30.34 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.1
Q ss_pred CCCcceEEeEEEEeeccccCCC-CcceeEEEEEec
Q 000624 197 PLDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQ 230 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~ 230 (1385)
.....|.+.-+..++++..+.. +.|.||++||-.
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~ll 46 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLL 46 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEE
Confidence 3456788888888899887764 789999999964
No 427
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=32.08 E-value=5.8e+02 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=11.5
Q ss_pred cHHHHHhhhHHHHHHHHHHHHHhHHHH
Q 000624 1235 SLEASTKIQLKFLAEEMQAISKGLEKV 1261 (1385)
Q Consensus 1235 ~l~~Askv~l~~L~~e~~~l~k~L~kl 1261 (1385)
.+..+..-.+..+..||..+...+.+.
T Consensus 6 ~v~d~~~~~~~~~~~Dl~~i~e~~~~~ 32 (289)
T PF05149_consen 6 AVIDYKRRQKQACEEDLERIKEKIQNT 32 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444443
No 428
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=32.00 E-value=4.7e+02 Score=28.85 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000624 1326 VVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1326 ff~~l~~Fi~~fkka~ 1341 (1385)
+..-+.+++..|....
T Consensus 90 V~~Pl~~~~~~~~~~~ 105 (195)
T cd07589 90 VIEPLSSLLKLFSGPQ 105 (195)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 4444444555444433
No 429
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=31.97 E-value=8.1e+02 Score=30.78 Aligned_cols=260 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhhhhhccCCCChhHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccC----CCCCcchhHHHHHHHhCCC
Q 000624 1048 RANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNG----DKGNLGKCEQFFLELMKVP 1123 (1385)
Q Consensus 1048 Ra~Ni~I~L~klkl~~~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~g----d~~~L~~~EqFll~L~~Ip 1123 (1385)
+|.-+.--+.-+.-...+|.+++..+.....+......++..+=...|...=-.-.| +......-|+-+..+.+--
T Consensus 75 ~a~~L~~Q~~iI~~~a~~ll~~~~~~~~~~~s~~~a~~~L~~~~~~~~~d~~L~~~Gf~~~~~~~~~~~EK~Y~~~L~~~ 154 (445)
T PF13608_consen 75 RADTLVEQLQIIEESAPQLLEALDDGFQPSHSYQLALDLLTVMMERSESDKELLENGFRTLNDKLYELMEKIYQDLLEES 154 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhhchHHHHhCCcccchHHHHHHHHHHHHHHHHHH
Q ss_pred ----cHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccce
Q 000624 1124 ----RVESKLRVFSFKIQFQ---------TQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVG 1190 (1385)
Q Consensus 1124 ----rl~~RL~~l~Fk~~f~---------~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~G 1190 (1385)
.+.+|+.+..+...+. ....+++........+|-.-........+-.+.-.+.++.+...
T Consensus 155 W~eLsl~eK~~~~~~s~k~~~~~~~~l~~~~~~dl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 227 (445)
T PF13608_consen 155 WRELSLLEKLSAIWRSRKFRKRSEKCLIPKAAADLKGRYSISVKACFGKAKQHLKSARSSIVRKCKSSVSSVV------- 227 (445)
T ss_pred HHhCcHHHHHHHHHHHHhhHHhhcccccccccccccChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred eeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCcccc--------------ccHHHHHhhhHHHHHHHHHHHHH
Q 000624 1191 FRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDL--------------VSLEASTKIQLKFLAEEMQAISK 1256 (1385)
Q Consensus 1191 FkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL--------------~~l~~Askv~l~~L~~e~~~l~k 1256 (1385)
..+..+++..+...+||+..|.+-| ..+..-.+........+.++..+
T Consensus 228 ------------------~~~~~~~~~~i~~~~pDi~~~invl~v~slLl~i~~~~~~ii~~~r~~K~~~~~~~~~~~~~ 289 (445)
T PF13608_consen 228 ------------------RKVVNKALSTIKRCFPDIFKFINVLLVISLLLQIANTIRNIINEHRQLKRRAAEEKEEKEED 289 (445)
T ss_pred ------------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 000624 1257 GLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVR--------------SLALLYSSVGRNADALAQYFGEDPARCP 1322 (1385)
Q Consensus 1257 ~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~--------------~L~~~~~~~~~~~~~l~~yFGEdp~~~~ 1322 (1385)
.+..+- .+....++.+..++|.+.+++...+....++ .-+..++++..-..-++-.|.-+-.+|
T Consensus 290 ~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD~ERSD~- 367 (445)
T PF13608_consen 290 EIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFDAERSDC- 367 (445)
T ss_pred HHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhCchhhHH-
Q ss_pred hHHHHHHHHHHHHHH
Q 000624 1323 FEQVVSTLLNFVKMF 1337 (1385)
Q Consensus 1323 ~eeff~~l~~Fi~~f 1337 (1385)
+|++|+.|-.-|
T Consensus 368 ---VyKiLnKlK~v~ 379 (445)
T PF13608_consen 368 ---VYKILNKLKGVF 379 (445)
T ss_pred ---HHHHHHHHHHHH
No 430
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.97 E-value=1.6e+02 Score=28.35 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC
Q 000624 1247 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLAL-LYSSVGRNADALAQYFGEDP 1318 (1385)
Q Consensus 1247 L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~-~~~~~~~~~~~l~~yFGEdp 1318 (1385)
|.+++..+...++.+.........+ ..+.....+...++.+..++.++.. ...++.+....+-.|-.|+|
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~--~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGE--KADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4455555555555554443322111 1244556666666666666665543 33344455566666666665
No 431
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=31.87 E-value=1.9e+02 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCcceEEeEEEEeeccccC-CCCcceeEEEEEec
Q 000624 198 LDRALTLDCVILRVIPNFD-GEGGCCPIFRIYGQ 230 (1385)
Q Consensus 198 ~~~~l~L~~I~l~~iP~f~-~~~gcrP~~~Iy~~ 230 (1385)
....|.+.-+.-++++..+ ..+.|.||++|+-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~ 45 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEe
Confidence 3456777777788888877 56789999999864
No 432
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.84 E-value=3.9e+02 Score=31.59 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCChHHHHHHHHHHHHHHH
Q 000624 1278 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA----RCPFEQVVSTLLNFVKMFV 1338 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~----~~~~eeff~~l~~Fi~~fk 1338 (1385)
...+|.+-+-.-...+.-+......+.++.++--+..|.-.. ...+-=||-++..|+-.|-
T Consensus 247 Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 247 LQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 344445555555566666655555555554444444443111 1112234555556666553
No 433
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=31.80 E-value=6.2e+02 Score=26.47 Aligned_cols=13 Identities=15% Similarity=-0.120 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000624 1331 LNFVKMFVLAHEE 1343 (1385)
Q Consensus 1331 ~~Fi~~fkka~ee 1343 (1385)
.+..+.|.++..+
T Consensus 97 ~~~~k~~~~~~~~ 109 (194)
T cd07307 97 KKRRKKLDKARLD 109 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 434
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans. Some proteins containing this domain are described as coiled-coil domain-containing protein 55, but the function is unknown.
Probab=31.78 E-value=4.9e+02 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1335 KMFVLAHEENCRQLEFERKKAEKAVEN 1361 (1385)
Q Consensus 1335 ~~fkka~een~k~~e~Ekkk~~keae~ 1361 (1385)
..|++-++|+.+..+.|+++++.++.+
T Consensus 93 ~AYKkkleE~k~~eeee~~~e~~e~~~ 119 (127)
T PF09745_consen 93 SAYKKKLEERKKWEEEEKRREELEEKN 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888777766666666655443
No 435
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=31.63 E-value=1.2e+02 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCCCCCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 193 SEWPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 193 ~~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
..+.+....|.+.-|.-++++..+..+.|.||++||-.
T Consensus 8 L~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~ 45 (136)
T cd08406 8 LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLL 45 (136)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE
Confidence 34445667799999999999988877889999999874
No 436
>PF13514 AAA_27: AAA domain
Probab=31.54 E-value=1.7e+03 Score=31.45 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000624 1289 AEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343 (1385)
Q Consensus 1289 a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ee 1343 (1385)
...++..++.....+...+..++.-++.+......++.+..|...+...+...++
T Consensus 748 ~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~ 802 (1111)
T PF13514_consen 748 LRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEE 802 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777788888887665555556666666666666555433
No 437
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=31.50 E-value=2.1e+02 Score=31.64 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCCCcc--hhHHHHHHHHHhc
Q 000624 104 HHFLRSSESWLSLGHQNVLLMHCERGGWPV--LAFMLAALLIYRK 146 (1385)
Q Consensus 104 ~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr~--tg~~ia~yLly~~ 146 (1385)
.++++.+..++....++- ++=|..||.|. .|+++||+|.-.+
T Consensus 72 ~~~~~~v~~~i~~~~~~~-v~vnlsgG~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR-VIINLSGGMRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc-EEEEcCCCchHHHHHHHHHHHhcccc
Confidence 466777777777655443 44466777674 3567777776443
No 438
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.41 E-value=8.9e+02 Score=28.19 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000624 1327 VSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1327 f~~l~~Fi~~fkka~een 1344 (1385)
+..|.+++..|..+...+
T Consensus 206 i~~~k~~l~~y~~~~s~~ 223 (269)
T cd07673 206 LIRIKEIIGSYSNSVKEI 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555555544444
No 439
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=31.34 E-value=3.1e+02 Score=27.72 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=52.5
Q ss_pred CCCcceEEeEEEEeeccccCCC-CcceeEEEEEecCCccccCCCCcEEEeCCCCCcce-eeecccCceeEEEcccc-ccc
Q 000624 197 PLDRALTLDCVILRVIPNFDGE-GGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-HIQ 273 (1385)
Q Consensus 197 p~~~~l~L~~I~l~~iP~f~~~-~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~-~~y~~~d~~~i~~~~~~-~v~ 273 (1385)
+....|.++-|.-++++..+.. +.|.||++||..... .....+.|....... -.|. +.+.|++.. .+.
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~wn----E~f~f~i~~~~l~ 82 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK-----SRQSKRKTSIKRNTTNPVYN----ETLKYSISHSQLE 82 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC-----ccccceEeeeeeCCCCCccc----ceEEEECCHHHhC
Confidence 3456688888888888876543 669999999874211 000011111111111 1222 235565432 233
Q ss_pred C-CEEEEEEecCCcccccceEEEEEeeccccc
Q 000624 274 G-DVVLECISLDSDQEREEMMFRVMFNTAFIR 304 (1385)
Q Consensus 274 G-DV~i~~~h~~~~~~~~~~~Fr~~FnT~FI~ 304 (1385)
+ -+.|.|++.+. .++...|..+.|.-+-+.
T Consensus 83 ~~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 83 TRTLQLSVWHYDR-FGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CCEEEEEEEECCC-CCCCcEEEEEEEeCCccc
Confidence 3 37778888663 345566777777665543
No 440
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.23 E-value=7.6e+02 Score=27.33 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 000624 1245 KFLAEEMQAISKGLEKVVQE 1264 (1385)
Q Consensus 1245 ~~L~~e~~~l~k~L~kl~~e 1264 (1385)
..+...|.+|...+..++.+
T Consensus 127 ~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQ 146 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 441
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=31.03 E-value=1.7e+02 Score=29.55 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCCCcceEEeEEEEeeccccCCCCcceeEEEEEec
Q 000624 196 PPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQ 230 (1385)
Q Consensus 196 ~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~ 230 (1385)
-+....|.++-|..++++..+..+.|.+|++++..
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll 46 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL 46 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc
Confidence 34557789999999999988877778899998764
No 442
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.00 E-value=8.5e+02 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
.++.+.++-+++...++.+..++... ..+.+.+...+...+.++.+|+...+.+.+...++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L-------~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENL-------EVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665432 34667778888888888888888777776665555
No 443
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=30.97 E-value=2.4e+02 Score=32.01 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 000624 1290 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1336 (1385)
Q Consensus 1290 ~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~ 1336 (1385)
+.+++..+..|++..+.+...+.-|=+... +....|.+|+..
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~le~e~-----e~~~~L~~lv~A 197 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFLENDV-----EQVSQLSVLIEA 197 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-----HHHHHHHHHHHH
Confidence 556666666666666666666666655432 334455555554
No 444
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=30.94 E-value=44 Score=39.31 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCCCC
Q 000624 102 TVHHFLRSSESWLSLGHQNVLLMHCERGGW 131 (1385)
Q Consensus 102 ~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkg 131 (1385)
.+-.++.+|.+||.++++.||+|+|+...+
T Consensus 98 ~~~~~L~~i~~fl~~~p~Evvil~~~~~~~ 127 (290)
T cd08616 98 LVKEILEEINDFLTEHPKEVVILDFNHFYG 127 (290)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 677899999999999999999999976443
No 445
>PRK02224 chromosome segregation protein; Provisional
Probab=30.91 E-value=1e+03 Score=32.38 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1282 LKEFLSYAEGEVRSLALLYSSVG 1304 (1385)
Q Consensus 1282 l~~Fl~~a~~~l~~L~~~~~~~~ 1304 (1385)
+...+..++.++..+.+.+..+.
T Consensus 410 ~e~~l~~l~~~~~~l~~~~~~~~ 432 (880)
T PRK02224 410 AEDFLEELREERDELREREAELE 432 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433
No 446
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=30.82 E-value=1.4e+02 Score=37.13 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1283 KEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1283 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
...|..+...-+.+....+++++.|.+++..|.|
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555555555544
No 447
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=30.78 E-value=2.2e+02 Score=30.67 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 000624 1290 EGEVRSLALLYSSVGRNADALAQYFGEDPAR 1320 (1385)
Q Consensus 1290 ~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~ 1320 (1385)
.....+|+.+.+.+..+|-+|+.-.+.++..
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl~~l~~~P~~ 101 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELLDILSKNPSQ 101 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS---CCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3445667777777777788888777777754
No 448
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=30.53 E-value=1e+03 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=32.2
Q ss_pred hHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHHHHHhccCCCCCcchhHHHHHHHh
Q 000624 1064 PDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELM 1120 (1385)
Q Consensus 1064 ~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~~Lk~y~gd~~~L~~~EqFll~L~ 1120 (1385)
+.|-+||. ....+.|..+.++-+|-..-|+-+|.+|.... .=...+.|.++|+
T Consensus 25 ~~lsral~---ag~~spdf~~~i~wl~~Elr~L~k~eE~V~q~-~~~~~~eF~~elS 77 (465)
T KOG3973|consen 25 ENLSRALM---AGGISPDFANQIIWLCAELRELYKIEEYVRQP-NDHNLLEFLYELS 77 (465)
T ss_pred hhHHHHHH---cCCCChhHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHH
Confidence 44555554 34566777777777775555666666664332 3345677777765
No 449
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=30.45 E-value=8.7e+02 Score=29.22 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLAL----LYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1341 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~----~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ 1341 (1385)
+.|.+.|+..++.....|.+... +..++.....+++.-+..+......+.++..|......|+...
T Consensus 239 ~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~ 308 (339)
T cd09235 239 AISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELT 308 (339)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555554433333333333333 3333333344443333333332344566666666666665444
No 450
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=2.4e+02 Score=34.41 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 000624 1291 GEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQ 1370 (1385)
Q Consensus 1291 ~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~ 1370 (1385)
..+..+..++.-+.-..+....||--...+...+. ....+...|.|.....+..+++++|.+.+++++|+.++. ++
T Consensus 336 k~me~iv~i~~li~ylid~~~~~~lS~~~k~kt~~---~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~a~-~d 411 (440)
T KOG2357|consen 336 KDMEDIVEILNLIFYLIDKAKKLFLSKDAKAKTDK---NRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLKAS-GD 411 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q ss_pred chhhhh
Q 000624 1371 SEHLVQ 1376 (1385)
Q Consensus 1371 ~~~~~~ 1376 (1385)
.+++.+
T Consensus 412 ~Ek~rr 417 (440)
T KOG2357|consen 412 PEKQRR 417 (440)
T ss_pred HHHHHH
No 451
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=30.35 E-value=3e+02 Score=36.70 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1297 ALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1346 (1385)
Q Consensus 1297 ~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k 1346 (1385)
..+|.++++..+.+...|..|.. -|+++..-|..|+....+..+.+++
T Consensus 426 ~~l~~~i~~~V~~i~~~f~~d~~--vf~~~l~el~~~~~~~~~~~~~~~~ 473 (729)
T PF07793_consen 426 DPLYQKIEEVVDRILQEFEGDPA--VFEELLQELEAFLEQERRRAQRNER 473 (729)
T ss_pred hHHHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999999988753 2455556666666655555544443
No 452
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=30.25 E-value=6.8e+02 Score=28.65 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Q 000624 1277 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLA 1340 (1385)
Q Consensus 1277 ~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka 1340 (1385)
.|...+..|+..++.-++.++. .-.....|+--+....+++.+...+.+.+..|.+.
T Consensus 219 ~~~~~~~~~~~~~~~~i~~vr~-------~~~~~~~~~~~~~~~~~~~~l~~~yn~lI~~yN~~ 275 (276)
T PF12889_consen 219 SFMSSADSFKSSAKSFIRRVRD-------LQQSESNWMSGEPTEGSPEKLLKSYNDLISDYNRL 275 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------------HCTTSS--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hcchhhhhhcccCCCCCHHHHHHHHHHHHHHhccC
Confidence 5666666666666666665555 11112222222222335667888888888888754
No 453
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.05 E-value=3.2e+02 Score=33.19 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1278 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1278 F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
+...+..++.......+.|......+......+..+|.|.
T Consensus 223 ~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~ 262 (359)
T COG1463 223 LLDNLATLTAALAARRDALDDALAALSALAATVNDLLAEN 262 (359)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444333333555555555555566666666664
No 454
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=29.93 E-value=4e+02 Score=27.92 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 000624 1244 LKFLAEEMQAISKGLEKVV 1262 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~ 1262 (1385)
+..|.+.+..|++.++++.
T Consensus 73 i~Sl~~~f~~lk~~l~~C~ 91 (137)
T smart00188 73 VNSLGEKLKTLRLRLRRCH 91 (137)
T ss_pred HHHHHHHHHHHHHHHHHCc
Confidence 4456666666666666654
No 455
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.86 E-value=6.2e+02 Score=29.92 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 000624 1140 TQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
+.+.+++..-+.++.-+.++++
T Consensus 55 e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 55 EKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 456
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=29.83 E-value=1.5e+02 Score=30.89 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=51.4
Q ss_pred CCCCCcceEEeEEEEeeccccC--CCCcceeEEEEEecCCcccc-CCCCcEEEeCCCCCcceeeecccCceeEEEccccc
Q 000624 195 WPPLDRALTLDCVILRVIPNFD--GEGGCCPIFRIYGQDPLMVA-DRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCH 271 (1385)
Q Consensus 195 ~~p~~~~l~L~~I~l~~iP~f~--~~~gcrP~~~Iy~~~~~~~~-~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~ 271 (1385)
|.+....|.+.-+.-++++..+ ..+||.||++||-....-+. .+.+++...+. --.| ++.|.|++.-.
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~-----nPvf----NE~f~F~v~~~ 80 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKI-----NPVW----NEMIMFELPSE 80 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCC-----CCcc----ccEEEEECCHH
Confidence 4455677888888888888776 34679999999864311000 00111111110 0122 13466665433
Q ss_pred ccCC--EEEEEEecCCcccccceEEEEEeecc
Q 000624 272 IQGD--VVLECISLDSDQEREEMMFRVMFNTA 301 (1385)
Q Consensus 272 v~GD--V~i~~~h~~~~~~~~~~~Fr~~FnT~ 301 (1385)
-..+ +.|.+++.+. .++...|-++.|...
T Consensus 81 ~L~~~~L~~~V~d~d~-~~~~d~iG~v~lg~~ 111 (138)
T cd08407 81 LLAASSVELEVLNQDS-PGQSLPLGRCSLGLH 111 (138)
T ss_pred HhCccEEEEEEEeCCC-CcCcceeceEEecCc
Confidence 3233 5556666543 344556667666654
No 457
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=29.82 E-value=8.4e+02 Score=27.40 Aligned_cols=26 Identities=0% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1137 QFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1137 ~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
.....++++...|..|.+.|+.++++
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~a 31 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLISA 31 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888877663
No 458
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=29.80 E-value=3.1e+02 Score=26.83 Aligned_cols=87 Identities=10% Similarity=0.169 Sum_probs=44.9
Q ss_pred EEeEEEEeeccccCC-CCcceeEEEEEecCCccccCCCCcEEEeCCCCCccee-eecccCceeEEEccccc-c-cCCEEE
Q 000624 203 TLDCVILRVIPNFDG-EGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCH-I-QGDVVL 278 (1385)
Q Consensus 203 ~L~~I~l~~iP~f~~-~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~-~y~~~d~~~i~~~~~~~-v-~GDV~i 278 (1385)
.++=+.-++++..+. .+.|.||++|+-+. ..+.|....+... .|.. +.+.|.+... + ..-+.|
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~~~nP~W~n---e~f~f~i~~~~l~~~~l~i 68 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKKSLNPVWNS---EWFRFEVDDEELQDEPLQI 68 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecCCCCCcccC---cEEEEEcChHHcCCCeEEE
Confidence 444555667777764 46689999999753 2233322222221 2211 2244544221 2 235778
Q ss_pred EEEecCCcccccceEEEEEeecccc
Q 000624 279 ECISLDSDQEREEMMFRVMFNTAFI 303 (1385)
Q Consensus 279 ~~~h~~~~~~~~~~~Fr~~FnT~FI 303 (1385)
+|++.+. ..+...|.++.+.-.-+
T Consensus 69 ~V~d~d~-~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 69 RVMDHDT-YSANDAIGKVYIDLNPL 92 (110)
T ss_pred EEEeCCC-CCCCCceEEEEEeHHHh
Confidence 8888653 23344566655554443
No 459
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=29.80 E-value=8.8e+02 Score=27.64 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=7.9
Q ss_pred HHHhhHHHHHHHHHH
Q 000624 1158 EVRNSIKLKRIMQTI 1172 (1385)
Q Consensus 1158 eLr~S~~L~~lL~~I 1172 (1385)
|-.-++.|.++-.-.
T Consensus 35 E~~YAK~L~kLa~k~ 49 (239)
T cd07658 35 ELNYAKGLSKLSGKL 49 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334456666665443
No 460
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=29.72 E-value=1.6e+02 Score=29.69 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1316 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1316 (1385)
+.|..|++..++.+.....-.+++...+.....||.+
T Consensus 3 ~~~~~~~~~i~~~~~~~~~~~ekL~~~i~~~~~~~~~ 39 (133)
T PF08359_consen 3 EKMNRFLERIEEAIADESSPEEKLRALIEAHLDFLEE 39 (133)
T ss_dssp HHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433333333333333333344433
No 461
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.72 E-value=6.1e+02 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=16.1
Q ss_pred HHhcccccCCCCCCccceeeccchhh
Q 000624 1173 LSLGNALNHGTARGSAVGFRLDSLLK 1198 (1385)
Q Consensus 1173 L~lGN~LN~Gt~rg~A~GFkL~sL~K 1198 (1385)
-.+|--||... .|.||+-++..+
T Consensus 34 eEvg~~L~RTs---AACGFRWNs~VR 56 (161)
T TIGR02894 34 EEVGRALNRTA---AACGFRWNAYVR 56 (161)
T ss_pred HHHHHHHcccH---HHhcchHHHHHH
Confidence 34566777754 488999887664
No 462
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.68 E-value=1.3e+03 Score=29.52 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=52.0
Q ss_pred chhhhhhhhhhhhhhhccCCCChhHHH-HhHhccCCC-----CCCHHHHhhhhhcCCCHHHHHHHHh--------ccCCC
Q 000624 1041 VQLIELRRANNCEIMLTKVKIPLPDLM-GSVLALDDS-----ALDIDQVDNLIKFCPTKEEMEVLKN--------YNGDK 1106 (1385)
Q Consensus 1041 i~lLD~KRa~Ni~I~L~klkl~~~ei~-~aIl~lD~~-----~L~~e~le~Llk~~Pt~EE~~~Lk~--------y~gd~ 1106 (1385)
-+..+.-|..+..|....|- +.++.+ +|=...|.. .-..++++.++..+ .+.++.+.+ +..+.
T Consensus 62 e~~Fe~Wrq~W~di~~~~fa-dvEE~lfeAE~~~dkfrF~kA~~~i~~ie~~l~~i--E~~i~~il~~l~~Lv~sEekN~ 138 (570)
T COG4477 62 ETKFEEWRQKWDDIVTNSFA-DVEEHLFEAEALADKFRFNKAKHEIDDIEQQLTLI--EEDIEQILEDLNELVESEEKNS 138 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhhhhhHHhhhhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhH
Confidence 35778888999999988875 444432 222222211 22344555555443 233333322 22222
Q ss_pred CCcchhHHHHHHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000624 1107 GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEE 1158 (1385)
Q Consensus 1107 ~~L~~~EqFll~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~e 1158 (1385)
+..+.+---+ -+.|-+++.-..+|.+.+..+.+.|+.+...+.+
T Consensus 139 ~~i~~~~ely--------~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~q 182 (570)
T COG4477 139 EEIDHVLELY--------EELRRDVLANRHQYGEAAPELEKKLENIEEELSQ 182 (570)
T ss_pred HHHHHHHHHH--------HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2222211111 1223345556666777777777666666554443
No 463
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=29.65 E-value=9e+02 Score=27.72 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC----CCCChHHHHHHHHHHHHHHHH
Q 000624 1294 RSLALLYSSVGRNADALAQYFGEDP----ARCPFEQVVSTLLNFVKMFVL 1339 (1385)
Q Consensus 1294 ~~L~~~~~~~~~~~~~l~~yFGEdp----~~~~~eeff~~l~~Fi~~fkk 1339 (1385)
..+...++++...++.+..-..+-. +..+.-++..++..-+..+..
T Consensus 181 ~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqw 230 (254)
T KOG2196|consen 181 ENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQW 230 (254)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443311 112344666776666665543
No 464
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.55 E-value=7.5e+02 Score=35.69 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=6.9
Q ss_pred cCCCChhHHHHhHh
Q 000624 1058 KVKIPLPDLMGSVL 1071 (1385)
Q Consensus 1058 klkl~~~ei~~aIl 1071 (1385)
+..++..++...|.
T Consensus 140 ~~plt~~~l~~~l~ 153 (1353)
T TIGR02680 140 GIPLTRDRLKEALG 153 (1353)
T ss_pred CccCCHHHHHHHhC
Confidence 34445555555554
No 465
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.52 E-value=9.2e+02 Score=27.75 Aligned_cols=13 Identities=0% Similarity=-0.033 Sum_probs=6.6
Q ss_pred HhhHHHHHHHHHH
Q 000624 1160 RNSIKLKRIMQTI 1172 (1385)
Q Consensus 1160 r~S~~L~~lL~~I 1172 (1385)
..+..|+.||..-
T Consensus 5 s~~~~f~~FLts~ 17 (240)
T cd07667 5 SFNEHFNVFLTAK 17 (240)
T ss_pred ccChHHHHHHcch
Confidence 3455555555444
No 466
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=29.41 E-value=9e+02 Score=27.61 Aligned_cols=206 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccccCCchhHHH
Q 000624 1140 TQVSDLRTSLNIINSASEEV------RNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMH 1213 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eL------r~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLh 1213 (1385)
..+.-|...+..+..-++.- ....+|..|-..|..+-..|+.-+.+ ..-..+
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~----------------------R~E~~~ 62 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKR----------------------RVESNK 62 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHH
Q ss_pred HHHHHHHhhCcccc-CCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHH
Q 000624 1214 YLCKVLAEKLPELL-GFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGE 1292 (1385)
Q Consensus 1214 yl~k~l~ek~pell-~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~ 1292 (1385)
-|...+......+. .+...+......-...++.|...+..|.+.+..-+.++. ..+......+.....+-
T Consensus 63 ~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~---------~~ie~~~~~l~~~l~~l 133 (247)
T PF06705_consen 63 KLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERP---------QDIEELNQELVRELNEL 133 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1293 VRSLALLYSSVGRNADALAQYFGEDPARC-------------PFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAV 1359 (1385)
Q Consensus 1293 l~~L~~~~~~~~~~~~~l~~yFGEdp~~~-------------~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~kea 1359 (1385)
...++.....-.+.-..++.-+|++.... ...++...|.+.+ ......++.-+..-.+.-..-+.+
T Consensus 134 ~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~-~~~~~~~e~f~~~v~~Ei~~lk~~ 212 (247)
T PF06705_consen 134 QEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVK-RRREKGDEQFQNFVLEEIAALKNA 212 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhccCcchhhhhc
Q 000624 1360 ENEKLKTQKGQSEHLVQN 1377 (1385)
Q Consensus 1360 e~ek~~~~k~~~~~~~~~ 1377 (1385)
-....+..+...+..|++
T Consensus 213 l~~e~~~R~~~Dd~Iv~a 230 (247)
T PF06705_consen 213 LALESQEREQSDDDIVQA 230 (247)
T ss_pred HHHHHHHHHhhhhHHHHH
No 467
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.27 E-value=1.5e+03 Score=30.05 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCcchhHHHHHHHhC-CCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 000624 1107 GNLGKCEQFFLELMK-VPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEEVRNS 1162 (1385)
Q Consensus 1107 ~~L~~~EqFll~L~~-Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~A~~eLr~S 1162 (1385)
+.|.+++.-+.+|.+ |-.++.|- .+-+..|.++.+.|..+.-|=+.|-.|
T Consensus 72 e~l~da~~ai~eL~~~i~eiks~a------e~Te~~V~eiTrdIKqLD~AKkNLTtS 122 (793)
T KOG2180|consen 72 ENLADAQAAIEELFQKIQEIKSVA------ESTEAMVQEITRDIKQLDFAKKNLTTS 122 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHhhhHHHhhHHHH
Confidence 456666666655542 33333322 122233444444444444444444443
No 468
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.26 E-value=2.3e+02 Score=30.36 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000624 1325 QVVSTLLNFVKMFVLAHEEN 1344 (1385)
Q Consensus 1325 eff~~l~~Fi~~fkka~een 1344 (1385)
.|=..+.+.+....++.++.
T Consensus 96 ~lQ~~vq~l~~E~qk~~k~v 115 (155)
T PF07464_consen 96 KLQSAVQSLVQESQKLAKEV 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 469
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=29.06 E-value=3e+02 Score=34.34 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 000624 1303 VGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1343 (1385)
Q Consensus 1303 ~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~ee 1343 (1385)
...-|+.|+.-|-+.-.....+.+|+.|...+..+.+...+
T Consensus 149 ~~~pYdaLld~yEpG~t~~~i~~vF~~Lk~~L~~ll~kv~~ 189 (497)
T COG2317 149 EEHPYDALLDLYEPGLTVRDVDRVFAELKKELVPLLDKVLE 189 (497)
T ss_pred ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555566665555444445677888887777766555443
No 470
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.99 E-value=2.7e+02 Score=27.88 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1250 EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1305 (1385)
Q Consensus 1250 e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~ 1305 (1385)
.++.|.+++++++..+..||+.. +.-+..|..-+++...++..|+.....+++
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrs---a~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRS---AASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444321 233334444455555555555444444433
No 471
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=28.91 E-value=4.9e+02 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhcccccC
Q 000624 1327 VSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPLKSS 1382 (1385)
Q Consensus 1327 f~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~~lk~~ 1382 (1385)
..+|.-..+.|.++.++...+++. -..+...-+.++..+.++++-.-+..|-+|
T Consensus 207 meTlDPnAk~y~~~~~dl~~~~~e--v~~~I~~l~~~~~~~~~~f~pte~~ll~ag 260 (289)
T PF05149_consen 207 METLDPNAKKYSKEKKDLLEQREE--VEQEINLLRDKQAKALEDFEPTEQLLLAAG 260 (289)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcchHHHHHHHcC
Confidence 445556677888888776543322 112222333344444455554444444444
No 472
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=28.83 E-value=5e+02 Score=36.50 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhcccccCC
Q 000624 1162 SIKLKRIMQTILSLGNALNHG 1182 (1385)
Q Consensus 1162 S~~L~~lL~~IL~lGN~LN~G 1182 (1385)
...+..+|+.|..+||--.++
T Consensus 77 ~~~i~~~~~~IRk~GN~AaH~ 97 (1123)
T PRK11448 77 PDEILDVFHKLRKIGNKAVHE 97 (1123)
T ss_pred CHHHHHHHHHHHHhChhhhcC
Confidence 356788899999999987764
No 473
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=28.81 E-value=1e+03 Score=30.59 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHhh
Q 000624 1324 EQVVSTLLNFVKMFVLAHEEN--C-RQLEFERKKAEKAVENEKLKT 1366 (1385)
Q Consensus 1324 eeff~~l~~Fi~~fkka~een--~-k~~e~Ekkk~~keae~ek~~~ 1366 (1385)
+++|....+.++.-..+...+ + .++-.|+|++-++.||+-.|+
T Consensus 445 ~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~~k~ 490 (533)
T COG1283 445 DALFALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRSSKR 490 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554444444433332211 1 223334444444444443333
No 474
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.73 E-value=3.2e+02 Score=28.66 Aligned_cols=119 Identities=14% Similarity=0.236 Sum_probs=0.0
Q ss_pred cceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhh
Q 000624 1188 AVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTA 1267 (1385)
Q Consensus 1188 A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~ 1267 (1385)
+.||-=..+.-.......++-..++..|-..|.... ....+.++|..-.....-++..+...+..|+..++.++.++..
T Consensus 13 s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~-r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~ 91 (151)
T PF11559_consen 13 SRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRD-RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELAS 91 (151)
T ss_pred HCCCCCCCccCcccccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000624 1268 SENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1314 (1385)
Q Consensus 1268 se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1314 (1385)
.+.+ ...+..=+..+...++..++.+.++...+.....-|
T Consensus 92 ~~~~-------~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 92 AEEK-------ERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=28.72 E-value=9.5e+02 Score=29.06 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 000624 1332 NFVKMFVLAHEEN 1344 (1385)
Q Consensus 1332 ~Fi~~fkka~een 1344 (1385)
.-+.+|.+|.+-|
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 3455566665443
No 476
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=28.64 E-value=1.3e+03 Score=29.18 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSV 1303 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~ 1303 (1385)
..|...+.......+..+..+...+++.
T Consensus 308 ~~~~plv~~~q~~~e~~le~l~~~~E~~ 335 (473)
T PF14643_consen 308 PEFLPLVGELQSEFEEELEKLDKSFEEL 335 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444433
No 477
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=28.63 E-value=2e+02 Score=32.06 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=23.6
Q ss_pred cccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHh
Q 000624 1225 ELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1225 ell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~ 1266 (1385)
++..|.++|.+++.. .+..|..+..+++..|+++++.+.
T Consensus 102 ~f~kiRsel~S~e~s---EF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 102 DFAKIRSELVSIERS---EFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666655543 455566677777777777665554
No 478
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=7.4e+02 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1280 KLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1310 (1385)
Q Consensus 1280 ~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1310 (1385)
..+..|+...+..+.........+.+..+..
T Consensus 67 ~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~ 97 (148)
T COG2882 67 QNYQQFISQLEVAIDQQQSQLSKLRKQVEQK 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788877777776666555554444444
No 479
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=28.62 E-value=1.7e+02 Score=31.26 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=29.1
Q ss_pred hHHHHhHhccCCCCCCHHHHhhhhhcCCCHHHHH-HHHhccCCCCCcchhHHHHH
Q 000624 1064 PDLMGSVLALDDSALDIDQVDNLIKFCPTKEEME-VLKNYNGDKGNLGKCEQFFL 1117 (1385)
Q Consensus 1064 ~ei~~aIl~lD~~~L~~e~le~Llk~~Pt~EE~~-~Lk~y~gd~~~L~~~EqFll 1117 (1385)
-|+...|+ |...|++..-|.+++|.-+.+--+ .+..|..+-..|.+--.-+.
T Consensus 54 yD~~~~il--~~~~l~VNl~Es~LRm~~~~d~ney~v~r~E~~fqeLn~ka~aLk 106 (207)
T KOG4025|consen 54 YDFTKVIL--DDSELSVNLQESYLRMHDTSDTNEYIVSRYEQDFQELNKKAIALK 106 (207)
T ss_pred HHHHHHHH--hhhccccchHHHHHHhhcccchhhHhhcCCCccHHHHHHHHHHHH
Confidence 45666665 566788888888888873332222 34445544445554444333
No 480
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.54 E-value=1.7e+03 Score=30.59 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhccccc--CCchhHHHHHHH
Q 000624 1140 TQVSDLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAR--NNKMTLMHYLCK 1217 (1385)
Q Consensus 1140 ~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~--d~k~TLLhyl~k 1217 (1385)
+++..+...|..+..-...|+....= ++..+-++-+.||..=.+ +++.| ...+.+. +...+-|.-...
T Consensus 785 e~l~kLn~eI~~l~~kl~~~~~er~~--~~~rk~~le~~l~~kL~~------r~~~l--~~ei~~~~d~~~~~el~~~~~ 854 (1200)
T KOG0964|consen 785 ERLSKLNKEINKLSVKLRALREERID--IETRKTALEANLNTKLYK------RVNEL--EQEIGDLNDSSRRSELELEKS 854 (1200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh------hhhHH--HHHhhhcccccchhhhhHHHH
Q ss_pred HHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 000624 1218 VLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLA 1297 (1385)
Q Consensus 1218 ~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~ 1297 (1385)
.+.. +..--.++...+..|.+.|+..+.++.+++.+++.. ..|......+ .....++..+.
T Consensus 855 el~~-----------~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~-------~~lek~~~~~-~~~dKe~Ek~~ 915 (1200)
T KOG0964|consen 855 ELES-----------EEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKA-------KNLEKEKKDN-INFDKELEKLV 915 (1200)
T ss_pred HHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhh-hhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh---C-------CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 000624 1298 LLYSSVGRNADALAQYF---G-------EDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEF----ERKKAEKAVENEK 1363 (1385)
Q Consensus 1298 ~~~~~~~~~~~~l~~yF---G-------Edp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~----Ekkk~~keae~ek 1363 (1385)
.....+.+.-.+++++. | +...+...++++.-|.......++-.--|.|..++ -.+|..-.+++++
T Consensus 916 ~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eE 995 (1200)
T KOG0964|consen 916 RRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEE 995 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhccCcchhhh
Q 000624 1364 LKTQKGQSEHLV 1375 (1385)
Q Consensus 1364 ~~~~k~~~~~~~ 1375 (1385)
.++.+.--.+++
T Consensus 996 Ld~s~~sI~eLi 1007 (1200)
T KOG0964|consen 996 LDRSKDSILELI 1007 (1200)
T ss_pred hccchhHHHHHH
No 481
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=28.43 E-value=1.4e+02 Score=36.10 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCCcchhHHHHHHHHH-hcCCCCHHHHHHHH
Q 000624 118 HQNVLLMHCERGGWPVLAFMLAALLIY-RKQFTGEQKTLDMI 158 (1385)
Q Consensus 118 ~~NVvvvHCk~Gkgr~tg~~ia~yLly-~~~~~~~~~al~~~ 158 (1385)
.+.-|+|||..|--|| +.+.+--.|. -..|.|.+-=+.++
T Consensus 230 ~~~~Vlvh~~dGwDrt-~q~~sL~ql~lDpyyRTi~GF~~LI 270 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRT-SQLSSLAQLLLDPYYRTIEGFQVLI 270 (353)
T ss_dssp T--EEEEECTTSSSHH-HHHHHHHHHHH-CGGGSHHHHHHHH
T ss_pred cCceEEEEcCCCCccc-HHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5677889999887774 5543333332 23344554333333
No 482
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=28.37 E-value=9.2e+02 Score=27.41 Aligned_cols=24 Identities=8% Similarity=0.342 Sum_probs=15.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Q 000624 1138 FQTQVSDLRTSLNIINSASEEVRN 1161 (1385)
Q Consensus 1138 f~~~v~~l~~~L~~v~~A~~eLr~ 1161 (1385)
+++.+.++...++....+++.|..
T Consensus 5 ld~~f~~le~~~d~t~~~~~~l~~ 28 (223)
T cd07615 5 LDDDFQEMERKIDVTNKVVAELLS 28 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777776666544
No 483
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=28.33 E-value=94 Score=30.93 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=18.9
Q ss_pred cCCCcEEEEEecCCCCcchhHHHHHHHHHhc
Q 000624 116 LGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1385)
Q Consensus 116 ~d~~NVvvvHCk~Gkgr~tg~~ia~yLly~~ 146 (1385)
.+.+..|||+|..|+ +. +..++.+|.+.|
T Consensus 76 ~~~~~~vv~~c~~g~-~~-a~~~~~~l~~~G 104 (122)
T cd01448 76 ISNDDTVVVYDDGGG-FF-AARAWWTLRYFG 104 (122)
T ss_pred CCCCCEEEEECCCCC-cc-HHHHHHHHHHcC
Confidence 356678999998763 33 555566666555
No 484
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=28.21 E-value=1.2e+02 Score=29.89 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCc
Q 000624 100 METVHHFLRSSESWLSLGHQNVLLMHCERGGWP 132 (1385)
Q Consensus 100 L~~l~~~c~~~~~WL~~d~~NVvvvHCk~Gkgr 132 (1385)
+..+...+..+..++..+....||+||..|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~r 79 (113)
T cd01443 47 AQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGR 79 (113)
T ss_pred hhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcc
Confidence 333333333333334334556899999876556
No 485
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=28.17 E-value=6.6e+02 Score=30.03 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000624 1286 LSYAEGEVRSLALLYSSVGRNADALAQYFGED 1317 (1385)
Q Consensus 1286 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1317 (1385)
++.++.+++..+..++.+.+.|+.....|..+
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g 147 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAKG 147 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34556666777777777777777777777654
No 486
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.15 E-value=1.6e+03 Score=30.06 Aligned_cols=211 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcccccCCCCCCccceeeccchhhhhcccccCCchhHHHHH
Q 000624 1139 QTQVSDLRTSLNIINSASEEVRN---SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYL 1215 (1385)
Q Consensus 1139 ~~~v~~l~~~L~~v~~A~~eLr~---S~~L~~lL~~IL~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TLLhyl 1215 (1385)
...++.....+.++.--+.+|+. ...--++.++|-.+...+-.=-+-.+..-...+.=+-|--+|+-|.. |.-=
T Consensus 326 ~~n~~kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaq---LrRr 402 (861)
T PF15254_consen 326 AKNPNKTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQ---LRRR 402 (861)
T ss_pred hhCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHH---HHHH
Q ss_pred HHHHHhhCccccCCccccc----cHHHHHhhhHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHH
Q 000624 1216 CKVLAEKLPELLGFPKDLV----SLEASTKIQLKF-LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAE 1290 (1385)
Q Consensus 1216 ~k~l~ek~pell~f~~eL~----~l~~Askv~l~~-L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~ 1290 (1385)
.+++..++-|-..-.+.-. +++.++--++.. |...+++..++++.++.. .+.|..-++..+
T Consensus 403 Lrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~k--------------neellk~~e~q~ 468 (861)
T PF15254_consen 403 LRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSK--------------NEELLKVIENQK 468 (861)
T ss_pred HHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHh--------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 000624 1291 GEVRSLALLYSSVGRNADALAQYFGEDPARC--PFEQVVSTLLNFVKMFVLAHEENCR-QLEFERKKAEKAVENEKLKT 1366 (1385)
Q Consensus 1291 ~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~--~~eeff~~l~~Fi~~fkka~een~k-~~e~Ekkk~~keae~ek~~~ 1366 (1385)
++-+.+.+++.+-+..+.+...-|-.+-.++ ..++-+..+..|-..++.+.+||.- .....+|-+|.++-+|-.|.
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
No 487
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.02 E-value=7.6e+02 Score=31.94 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred cccccHHHHHhhhHHHHHHHHHHHHHhHHH-HHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1231 KDLVSLEASTKIQLKFLAEEMQAISKGLEK-VVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1309 (1385)
Q Consensus 1231 ~eL~~l~~Askv~l~~L~~e~~~l~k~L~k-l~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1309 (1385)
.++..+....+..+..|..++.+++...++ +++.|..... +.|...-..+...++.++.++.+.+
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~-----e~~~~~~~~~~~~le~~~~~~~~~~--------- 312 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE-----ELLSKLREELEQELEEKRAELEEEL--------- 312 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhccc
Q 000624 1310 LAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPL 1379 (1385)
Q Consensus 1310 l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~~l 1379 (1385)
..+|-....+....|+..++...++.+.+-..+.+++.++.....+.++.+.|...+
T Consensus 313 -------------~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v 369 (582)
T PF09731_consen 313 -------------REEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKV 369 (582)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=27.96 E-value=9.3e+02 Score=27.31 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCh
Q 000624 1244 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1323 (1385)
Q Consensus 1244 l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~ 1323 (1385)
|..|..++..+.+.-..+...+. ......+..|..+.+...+.+.+.+.++.+.+..+
T Consensus 67 w~~i~~e~~~~a~~H~~~a~~l~---------~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~------------- 124 (251)
T cd07653 67 FRSILNEVNDIAGQHELIAENLN---------SNVCKELKTLISELRQERKKHLSEGSKLQQKLESS------------- 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhccCcchhh
Q 000624 1324 EQVVSTLLNFVKMFVLAHEENCRQLEFERKK--------AEKAVENEKLKTQKGQSEHL 1374 (1385)
Q Consensus 1324 eeff~~l~~Fi~~fkka~een~k~~e~Ekkk--------~~keae~ek~~~~k~~~~~~ 1374 (1385)
+..+...-+.|.++.+|..+......+. ++.++.+++..+.+.+.+++
T Consensus 125 ---~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a 180 (251)
T cd07653 125 ---IKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEA 180 (251)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH
No 489
>PRK09866 hypothetical protein; Provisional
Probab=27.89 E-value=1.3e+03 Score=30.46 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred hHHHHHHHhCCCc-HHHHHHHHH--HHHHHHhhHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCC
Q 000624 1112 CEQFFLELMKVPR-VESKLRVFS--FKIQFQTQVS---DLRTSLNIINSASEEVRNSIKLKRIMQTILSLGNALNHGTAR 1185 (1385)
Q Consensus 1112 ~EqFll~L~~Ipr-l~~RL~~l~--Fk~~f~~~v~---~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL~lGN~LN~Gt~r 1185 (1385)
.+.++.+|.+-++ -+.+-..|. |+..+..+.. ++.. ++.+..+.+.+-+...|..+++-++... +-|.+
T Consensus 341 id~LLdeI~~~~~l~~~~~~~wv~dfa~~~~gr~w~e~d~~d-~e~l~~~A~~lwedS~~~~~i~~~i~~~-~~~a~--- 415 (741)
T PRK09866 341 ANRARHELANNGKLPPPEQQRWVEDFAHAALGRRWRHADLAD-LEHIRHAADQLWEDSLFAQPIQALLHAA-YANAS--- 415 (741)
T ss_pred HHHHHHHHHhCCCCCchhhhHHHHHHHHHHhccccccccccc-hHHHHHHHHHHHHhcCccHHHHHHHHHH-HHhhH---
Q ss_pred CccceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 000624 1186 GSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQEL 1265 (1385)
Q Consensus 1186 g~A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el 1265 (1385)
+-.|-..+..-..-.....++|..-..+-.++.+.|+.++.++...++.++..
T Consensus 416 --------------------------~~al~sa~~kl~~~a~~~~d~l~~r~~gl~~~~~~L~~~I~~~e~d~~~l~~~- 468 (741)
T PRK09866 416 --------------------------LYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLN- 468 (741)
T ss_pred --------------------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1266 TASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC 1345 (1385)
Q Consensus 1266 ~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~ 1345 (1385)
...+++.....|..-+..+...+..-++.. ...+..||-.+.. +++.+..-|...--+.+++.
T Consensus 469 -----q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~~~~~------~~~~~~~~~~~~~~~~~~~~ 531 (741)
T PRK09866 469 -----QAQVSGEIKHEIELALTSANHFLRQQQDAV------NAQLAALFQDDSE------PLSEIRTRCETLLQTAQNTI 531 (741)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhcccc------hHHHHhhhhHHHHHHhhhhh
Q ss_pred HH
Q 000624 1346 RQ 1347 (1385)
Q Consensus 1346 k~ 1347 (1385)
-|
T Consensus 532 ~~ 533 (741)
T PRK09866 532 SR 533 (741)
T ss_pred hh
No 490
>PHA01732 proline-rich protein
Probab=27.87 E-value=76 Score=30.15 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000624 854 SAITSRPPPPPPPPLHSRGSTSMSLARPPPQ 884 (1385)
Q Consensus 854 ~~~~~pppPppppp~p~~~~~~~pp~PppPp 884 (1385)
.....+.++++++|.+.++..+.+++|.+++
T Consensus 5 gAP~~p~ppPpPpP~P~PpPpPppppP~p~p 35 (94)
T PHA01732 5 RAPKPPEPPAPLPPAPVPPPPPAPPAPVPEP 35 (94)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 491
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.81 E-value=9.1e+02 Score=27.15 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHH-HhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 000624 1243 QLKFLAEEMQAISKGLEKVVQE-LTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC 1321 (1385)
Q Consensus 1243 ~l~~L~~e~~~l~k~L~kl~~e-l~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~ 1321 (1385)
.+..-..+|..+..++++.... +...+.+......=...+..=-+.+...+.+++..|.++-+.|.++
T Consensus 34 e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~----------- 102 (207)
T PF05010_consen 34 ELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ----------- 102 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH-----------
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccCcchhhhhcc
Q 000624 1322 PFEQVVSTLLNFVKMFVLAHEENCRQLEFERKK--AEKAVENEKLKTQKGQSEHLVQNP 1378 (1385)
Q Consensus 1322 ~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk--~~keae~ek~~~~k~~~~~~~~~~ 1378 (1385)
.+++..+..==..++++.++...+...+.+| +.|.-..++......+-+.++...
T Consensus 103 --K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~ 159 (207)
T PF05010_consen 103 --KEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH 159 (207)
T ss_pred --HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=27.79 E-value=2.2e+02 Score=32.99 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCccccCCccccccHHHHHhhhHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHH
Q 000624 1211 LMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKF-LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYA 1289 (1385)
Q Consensus 1211 LLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~-L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a 1289 (1385)
+|.||..+|.+-.-.+..=..-|..-.......... -.+.|.+|...+.++..+.+.....|.+.+.. .+-.-++..
T Consensus 84 ~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~--~~~~~~e~L 161 (254)
T PF03194_consen 84 FLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQ--KLMEEVEKL 161 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHH
Q ss_pred HHHHHHHHH---HHHHHHHHHH-------HHHHHhC-----CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1290 EGEVRSLAL---LYSSVGRNAD-------ALAQYFG-----EDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1354 (1385)
Q Consensus 1290 ~~~l~~L~~---~~~~~~~~~~-------~l~~yFG-----Edp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk 1354 (1385)
+.+..+|+. .+........ ++|.-.| -|...---+-|.+-+.-=...++..+++..++.+..+++
T Consensus 162 k~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~~~~~~~~ 241 (254)
T PF03194_consen 162 KEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEKREERREK 241 (254)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 000624 1355 AEKAVENEKLK 1365 (1385)
Q Consensus 1355 ~~keae~ek~~ 1365 (1385)
.+.+.+.++.+
T Consensus 242 ~R~~~~~~~~R 252 (254)
T PF03194_consen 242 ERRRRELRKQR 252 (254)
T ss_pred hHhhhhhhhcc
No 493
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=27.78 E-value=94 Score=30.26 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhccc
Q 000624 1310 LAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPL 1379 (1385)
Q Consensus 1310 l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~~l 1379 (1385)
++..|| +++.+ ++...+..+++.|+++..+.....+.+.+.+..+.++.+.+.+..+..+..+.+.
T Consensus 16 ~lllfG--pkKLP--~l~r~~G~~i~~fKk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (94)
T COG1826 16 ALLVFG--PKKLP--EAGRDLGKAIREFKKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLA 81 (94)
T ss_pred HHHhcC--cchhH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcccchHHHhcccccchhh
No 494
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.75 E-value=1.1e+03 Score=30.19 Aligned_cols=141 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHhhCccccCCccccccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 000624 1216 CKVLAEKLPELLGFPKDLVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRS 1295 (1385)
Q Consensus 1216 ~k~l~ek~pell~f~~eL~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~ 1295 (1385)
++.|....-+||+..+-|..|..----.+++|.-+-.-|+..|+.+++. ..+|.+-+.+.+++++.
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqa--------------k~Klee~i~elEEElk~ 368 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQA--------------KLKLEEKIRELEEELKK 368 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCcchh
Q 000624 1296 LALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVEN--EKLKTQKGQSEH 1373 (1385)
Q Consensus 1296 L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~~keae~--ek~~~~k~~~~~ 1373 (1385)
+++........ |.+.+..+++. ....=+....-++--.++..-+|+..+.+|+-| |-+++.|...
T Consensus 369 ~k~ea~~ar~~------~~~~e~ddiPm-----AqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~p-- 435 (832)
T KOG2077|consen 369 AKAEAEDARQK------AKDDEDDDIPM-----AQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENP-- 435 (832)
T ss_pred HHHHHHHHHHh------hcccccccccH-----HHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcCc--
Q ss_pred hhhcccccCCC
Q 000624 1374 LVQNPLKSSTI 1384 (1385)
Q Consensus 1374 ~~~~~lk~~~~ 1384 (1385)
.| ..-|+|.|
T Consensus 436 ~v-qeKK~s~I 445 (832)
T KOG2077|consen 436 AV-QEKKRSSI 445 (832)
T ss_pred hh-hhhccccH
No 495
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=27.67 E-value=2.4e+02 Score=28.72 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred HhhcCCCCCCCCcceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEc
Q 000624 188 RRNVGSEWPPLDRALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKID 267 (1385)
Q Consensus 188 ~ll~~~~~~p~~~~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~ 267 (1385)
+++.+..+-+....|.+.=+.-++++..+..+.|.||++||-.. ..+..+..+.|....+.....-.+. |.|+
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp----~~~~~~~~~kT~v~~~t~nPvfnE~---F~f~ 74 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLP----CSSSTSCLFRTKALEDQDKPVFNEV---FRVP 74 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEcc----CCCCCCceEEcCccCCCCCCccccE---EEEE
Q ss_pred ccccccCCEEEEEEecCCccc-ccceEEEEEee
Q 000624 268 IHCHIQGDVVLECISLDSDQE-REEMMFRVMFN 299 (1385)
Q Consensus 268 ~~~~v~GDV~i~~~h~~~~~~-~~~~~Fr~~Fn 299 (1385)
+...=-++..|++.-.+.+.. +++.|..+.|.
T Consensus 75 v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~ 107 (124)
T cd08680 75 ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQIS 107 (124)
T ss_pred CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEE
No 496
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=27.60 E-value=1.9e+02 Score=27.77 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhcCCCceEEEecccCCccccccccccccCceeecCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEE
Q 000624 43 YLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVL 122 (1385)
Q Consensus 43 ~i~~V~~~L~~~h~~~~y~V~NLs~~~~~~~~~~~~s~~~~~V~~~P~~d~~~P~p~L~~l~~~c~~~~~WL~~d~~NVv 122 (1385)
..+++...|++.+.+ ..|..++.. .+|+.. +.| |+-..++..+..+...+..+ +.+..+
T Consensus 3 ~~~~l~~~~~~~~~~--~~iiDvR~~----------~e~~~~--hI~----ga~~ip~~~~~~~~~~~~~~---~~~~~v 61 (101)
T cd01528 3 SVAELAEWLADEREE--PVLIDVREP----------EELEIA--FLP----GFLHLPMSEIPERSKELDSD---NPDKDI 61 (101)
T ss_pred CHHHHHHHHhcCCCC--CEEEECCCH----------HHHhcC--cCC----CCEecCHHHHHHHHHHhccc---CCCCeE
Q ss_pred EEEecCCCCcchhHHHHHHHHHhcC
Q 000624 123 LMHCERGGWPVLAFMLAALLIYRKQ 147 (1385)
Q Consensus 123 vvHCk~Gkgr~tg~~ia~yLly~~~ 147 (1385)
||+|..|. | +..++.+|...|.
T Consensus 62 v~~c~~g~-r--s~~~~~~l~~~G~ 83 (101)
T cd01528 62 VVLCHHGG-R--SMQVAQWLLRQGF 83 (101)
T ss_pred EEEeCCCc-h--HHHHHHHHHHcCC
No 497
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=27.55 E-value=1.4e+03 Score=29.17 Aligned_cols=252 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHhccccc--CCCCCCc
Q 000624 1116 FLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINS------ASEEVRNSIKLKRIMQTILSLGNALN--HGTARGS 1187 (1385)
Q Consensus 1116 ll~L~~Iprl~~RL~~l~Fk~~f~~~v~~l~~~L~~v~~------A~~eLr~S~~L~~lL~~IL~lGN~LN--~Gt~rg~ 1187 (1385)
....+++.++..+|..+ =...+......++..+..+.. .-++-.+-.-|+.+++..+..-.+.. ....-..
T Consensus 4 ~At~~G~~~~~~~L~d~-S~~~~~~~~~~~~~~l~~L~~id~~~Ls~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 82 (549)
T PF05960_consen 4 SATYLGIHEYDDRLGDL-SPEAIEQRLAELRKLLKRLEAIDRASLSPEQQIDYDILRYLLERLLEGDEFEYWPYRYPLNY 82 (549)
T ss_dssp HHHHCT--S-TT------SHHHHHHHHHHHHHHHHHHHTS-GSC-SHHHHHHHHHHHHHHHHHHHHHTCSHCECCGCS-S
T ss_pred ccccccccccccCCCCC-CHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHhhcccccccCCccc
Q ss_pred cceeeccchhhhhcccccCCchhHHHHHHHHHHhhCccccCCccccccHHHHHhhhHHH-HHHHHHHHHHhHHHHHHHHh
Q 000624 1188 AVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKDLVSLEASTKIQLKF-LAEEMQAISKGLEKVVQELT 1266 (1385)
Q Consensus 1188 A~GFkL~sL~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~eL~~l~~Askv~l~~-L~~e~~~l~k~L~kl~~el~ 1266 (1385)
..|+......-|......++...+-+|+..+ .++..+-....-+++. ++..+-.-...++.+...+.
T Consensus 83 ~~g~~~~l~~~l~~~~~~~~~~d~~~~~~rL------------~~ip~~l~~~~~~l~~~~~~g~~~p~~~~e~~i~q~~ 150 (549)
T PF05960_consen 83 LSGAQAQLPSLLSEYHPFETEEDAEDYLARL------------AAIPAYLDQAIANLKEGAKKGLTPPREWVERAIAQLR 150 (549)
T ss_dssp SSSHHHHHHHHHCHTS-HSSHHHHHHHHHHH------------TTHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHhHHHcCCCCcHHHHHHHHHHHH
Q ss_pred hccCCCCchhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HHHHHHHHhCCCCCCC----------ChHHHHHH
Q 000624 1267 ASENDGEVSGNFCKLLKEFLS--YAEGEVRSLALLYSSVGR-----NADALAQYFGEDPARC----------PFEQVVST 1329 (1385)
Q Consensus 1267 ~se~d~~~~d~F~~~l~~Fl~--~a~~~l~~L~~~~~~~~~-----~~~~l~~yFGEdp~~~----------~~eeff~~ 1329 (1385)
...+.......|.+.+..++. .....-+.+.+...++.. .+.++..|+...-... .=++.+..
T Consensus 151 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~ai~~~v~pA~~~~~~~L~~~~~~~~~~~G~~~~~~G~~~Y~~ 230 (549)
T PF05960_consen 151 GFIDADPEESFLYEDFPERLAASLSEEQKEALIAQAREAIEEYVIPAYERLRDFLESEYLPAANSSGLSDLPNGKEYYER 230 (549)
T ss_dssp HHCSS-GGCTCHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCCSHHSGCGSTTHHHHHHH
T ss_pred HHHccCcccchHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccCCCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhcccc
Q 000624 1330 LLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPLK 1380 (1385)
Q Consensus 1330 l~~Fi~~fkka~een~k~~e~Ekkk~~keae~ek~~~~k~~~~~~~~~~lk 1380 (1385)
+..+...-...-+|..+..++|-++-..+..+...+...+..-..+...|+
T Consensus 231 ~l~~~t~~~~s~~ei~~~g~~e~~~~~~em~~~~~~~g~~~~~~~~~~~l~ 281 (549)
T PF05960_consen 231 LLRYYTTTDMSPEEIHELGLAEVARIRAEMQALAREIGFDGDWQEFLERLK 281 (549)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
No 498
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=27.54 E-value=3.7e+02 Score=26.86 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred ceEEeEEEEeeccccCCCCcceeEEEEEecCCccccCCCCcEEEeCCCCCcceeeecccCceeEEEcccccccCCEEEEE
Q 000624 201 ALTLDCVILRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLEC 280 (1385)
Q Consensus 201 ~l~L~~I~l~~iP~f~~~~gcrP~~~Iy~~~~~~~~~~~~k~l~st~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1385)
.|+++=|.-++++..+..+.|.||+.|+..+ +.++.|....+...-...+. +.|.+.-.-+ -+.|+|
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---------~~~~kT~v~~~t~nP~Wne~---f~~~~~~~~~-~l~v~v 67 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN---------EVIIRTATVWKTLNPFWGEE---YTVHLPPGFH-TVSFYV 67 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC---------EeeeeeeeEcCCCCCcccce---EEEeeCCCCC-EEEEEE
Q ss_pred EecCCcccccceEEEEEee
Q 000624 281 ISLDSDQEREEMMFRVMFN 299 (1385)
Q Consensus 281 ~h~~~~~~~~~~~Fr~~Fn 299 (1385)
++.+. .+....|.++.|.
T Consensus 68 ~d~~~-~~~d~~iG~~~~~ 85 (121)
T cd04054 68 LDEDT-LSRDDVIGKVSLT 85 (121)
T ss_pred EECCC-CCCCCEEEEEEEc
No 499
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.42 E-value=3.6e+02 Score=31.39 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHH-HHHHHhcccccCCCCCCccceeeccc-hhhhhcccccCCchhHHHHHHHHHHhhCccccCCccc
Q 000624 1155 ASEEVRNSIKLKRIM-QTILSLGNALNHGTARGSAVGFRLDS-LLKLTDTRARNNKMTLMHYLCKVLAEKLPELLGFPKD 1232 (1385)
Q Consensus 1155 A~~eLr~S~~L~~lL-~~IL~lGN~LN~Gt~rg~A~GFkL~s-L~KL~dtKs~d~k~TLLhyl~k~l~ek~pell~f~~e 1232 (1385)
|.+...+|..||..+ ++|+.|---|+..+.+ +-.+.+|.. +..|.|+++.+=+..-|+-....+.+.. +..+-.+.
T Consensus 113 AsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~-~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~-e~~~~~~~ 190 (269)
T PF05278_consen 113 ASNCKLKSQQFRSYYLECLCDIIQELQSTPLK-ELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAK-EIYDQHET 190 (269)
T ss_pred hhccccCcHHHHHHHHHHHHHHHHHHhcCcHh-hhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred cccHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000624 1233 LVSLEASTKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR----NAD 1308 (1385)
Q Consensus 1233 L~~l~~Askv~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~----~~~ 1308 (1385)
........+-.+.....++..+...|.+.++++. .++.-+.++..++.+|+....++.+ .--
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~--------------e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVK--------------EIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCC
Q 000624 1309 ALAQYFGE 1316 (1385)
Q Consensus 1309 ~l~~yFGE 1316 (1385)
++-.|-|.
T Consensus 257 KV~kf~~~ 264 (269)
T PF05278_consen 257 KVEKFHGK 264 (269)
T ss_pred HHHHhcCC
No 500
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.40 E-value=8.3e+02 Score=31.64 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcccccCCCCCCccceeeccchhhhhcccccCCchhH---
Q 000624 1136 IQFQTQVSDLRTSLNIINSASEEVRNSIKLKRIMQTIL-SLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTL--- 1211 (1385)
Q Consensus 1136 ~~f~~~v~~l~~~L~~v~~A~~eLr~S~~L~~lL~~IL-~lGN~LN~Gt~rg~A~GFkL~sL~KL~dtKs~d~k~TL--- 1211 (1385)
.+..+.+..++..+..+...++.| ..|-.-++..+ .--+=|-.|...--..||.|+.+.--.++.....+..-
T Consensus 194 ~~A~e~l~~l~~~~~~l~~~~~~i---P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 194 VEAREILDQLEEELAALEQIMEEI---PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHhhCccccCCccccccHHHHHh----------hhHHHHHHHHHHHHHhHHHHHHHHhhccCCCCch
Q 000624 1212 ------MHYLCKVLAEKLPELLGFPKDLVSLEASTK----------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVS 1275 (1385)
Q Consensus 1212 ------Lhyl~k~l~ek~pell~f~~eL~~l~~Ask----------v~l~~L~~e~~~l~k~L~kl~~el~~se~d~~~~ 1275 (1385)
|.-+...+..-.-++-.+.+.|..-..|.+ -.+..+.+....+...+..+.+.+.-.+++
T Consensus 271 ~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e---- 346 (569)
T PRK04778 271 LLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE---- 346 (569)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh----
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000624 1276 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKA 1355 (1385)
Q Consensus 1276 d~F~~~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEdp~~~~~eeff~~l~~Fi~~fkka~een~k~~e~Ekkk~ 1355 (1385)
-.....+..-+...+..+..+..........|..+..-+-+ ..+-...|..-...+.....+.++....-+.+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee------l~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE------ILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 000624 1356 EKAVEN 1361 (1385)
Q Consensus 1356 ~keae~ 1361 (1385)
++-..+
T Consensus 421 ~~~~~~ 426 (569)
T PRK04778 421 ERYRNK 426 (569)
T ss_pred HHHHHH
Done!