Query 000625
Match_columns 1384
No_of_seqs 759 out of 4497
Neff 6.2
Searched_HMMs 46136
Date Mon Apr 1 20:51:46 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1144 Translation initiation 100.0 5E-185 1E-189 1609.6 69.4 858 500-1384 202-1064(1064)
2 TIGR00491 aIF-2 translation in 100.0 5E-108 1E-112 1008.3 59.1 575 791-1379 1-580 (590)
3 PRK04004 translation initiatio 100.0 1E-104 2E-109 983.9 60.1 577 790-1380 2-583 (586)
4 PRK14845 translation initiatio 100.0 5E-105 1E-109 1017.5 57.2 565 797-1378 468-1037(1049)
5 COG0532 InfB Translation initi 100.0 8.5E-99 2E-103 884.8 46.6 500 791-1359 2-508 (509)
6 KOG1145 Mitochondrial translat 100.0 1.1E-87 2.4E-92 776.3 39.7 483 785-1353 144-671 (683)
7 TIGR00487 IF-2 translation ini 100.0 2.9E-81 6.2E-86 773.2 47.1 474 790-1351 83-579 (587)
8 PRK05306 infB translation init 100.0 5.1E-80 1.1E-84 776.2 49.4 472 790-1351 286-781 (787)
9 CHL00189 infB translation init 100.0 3.4E-78 7.3E-83 753.3 46.3 474 791-1350 241-734 (742)
10 COG5256 TEF1 Translation elong 100.0 1.7E-32 3.7E-37 314.7 21.7 261 793-1114 6-316 (428)
11 KOG0462 Elongation factor-type 100.0 8E-32 1.7E-36 314.1 16.6 224 790-1069 58-297 (650)
12 PTZ00141 elongation factor 1- 100.0 5.4E-31 1.2E-35 318.9 23.5 260 794-1113 7-317 (446)
13 PLN00043 elongation factor 1-a 100.0 1.4E-30 3.1E-35 315.1 23.6 259 795-1113 8-317 (447)
14 PRK10512 selenocysteinyl-tRNA- 100.0 1.9E-30 4.2E-35 324.0 25.4 251 795-1113 1-259 (614)
15 TIGR00475 selB selenocysteine- 100.0 2.6E-30 5.6E-35 322.0 26.0 254 795-1114 1-261 (581)
16 PRK12736 elongation factor Tu; 100.0 8.6E-30 1.9E-34 305.0 24.8 257 794-1113 12-296 (394)
17 KOG0460 Mitochondrial translat 100.0 2E-30 4.3E-35 287.6 16.9 260 793-1115 53-342 (449)
18 PLN03127 Elongation factor Tu; 100.0 1.6E-29 3.4E-34 305.8 26.1 259 792-1113 59-349 (447)
19 COG0050 TufB GTPases - transla 100.0 2.9E-30 6.3E-35 281.8 17.6 257 795-1114 13-297 (394)
20 PLN03126 Elongation factor Tu; 100.0 1.4E-29 3.1E-34 307.7 24.5 257 794-1113 81-375 (478)
21 PTZ00327 eukaryotic translatio 100.0 2.1E-29 4.5E-34 304.2 23.4 227 792-1054 32-288 (460)
22 TIGR01394 TypA_BipA GTP-bindin 100.0 2.2E-29 4.7E-34 313.2 23.6 257 792-1109 1-285 (594)
23 CHL00071 tufA elongation facto 100.0 3.5E-29 7.6E-34 301.2 24.6 257 794-1113 12-306 (409)
24 PRK12735 elongation factor Tu; 100.0 7.3E-29 1.6E-33 297.2 26.1 257 794-1113 12-298 (396)
25 PRK12317 elongation factor 1-a 100.0 3.2E-29 6.9E-34 303.4 22.8 259 794-1113 6-309 (425)
26 PRK00049 elongation factor Tu; 100.0 8.8E-29 1.9E-33 296.4 25.6 257 793-1112 11-297 (396)
27 TIGR00485 EF-Tu translation el 100.0 6.1E-29 1.3E-33 297.9 23.9 258 793-1111 11-294 (394)
28 COG0481 LepA Membrane GTPase L 100.0 2.6E-29 5.6E-34 288.9 19.3 229 789-1070 6-249 (603)
29 COG1217 TypA Predicted membran 100.0 9.4E-29 2E-33 283.4 20.4 272 790-1109 3-289 (603)
30 TIGR00483 EF-1_alpha translati 100.0 3.3E-28 7.2E-33 294.5 23.1 258 795-1113 8-311 (426)
31 COG3276 SelB Selenocysteine-sp 100.0 4.9E-28 1.1E-32 280.0 22.2 249 795-1114 1-256 (447)
32 PRK10218 GTP-binding protein; 100.0 4E-28 8.7E-33 301.4 22.5 259 790-1109 3-289 (607)
33 TIGR02034 CysN sulfate adenyly 99.9 3.5E-27 7.6E-32 283.5 22.1 236 796-1065 2-264 (406)
34 COG0480 FusA Translation elong 99.9 1.1E-26 2.4E-31 289.9 26.0 350 789-1160 7-465 (697)
35 PRK05433 GTP-binding protein L 99.9 6.8E-27 1.5E-31 291.8 22.9 213 790-1055 5-232 (600)
36 TIGR03680 eif2g_arch translati 99.9 9.5E-27 2.1E-31 279.9 23.1 225 794-1054 4-251 (406)
37 TIGR01393 lepA GTP-binding pro 99.9 1E-26 2.2E-31 290.1 22.0 212 791-1055 2-228 (595)
38 PRK05124 cysN sulfate adenylyl 99.9 2.1E-26 4.6E-31 281.0 23.1 232 794-1055 27-284 (474)
39 COG2895 CysN GTPases - Sulfate 99.9 1.5E-26 3.3E-31 258.9 17.7 225 795-1068 7-273 (431)
40 PRK04000 translation initiatio 99.9 6E-26 1.3E-30 273.0 23.2 227 793-1055 8-257 (411)
41 KOG0458 Elongation factor 1 al 99.9 8.4E-26 1.8E-30 267.3 23.1 227 793-1066 176-453 (603)
42 PF00009 GTP_EFTU: Elongation 99.9 2.5E-26 5.5E-31 248.1 14.3 165 795-1004 4-187 (188)
43 PRK05506 bifunctional sulfate 99.9 3.3E-25 7.3E-30 280.3 21.9 238 795-1065 25-288 (632)
44 COG5258 GTPBP1 GTPase [General 99.9 1.7E-25 3.7E-30 251.5 16.5 284 794-1113 117-436 (527)
45 PRK00007 elongation factor G; 99.9 6.6E-25 1.4E-29 279.6 24.2 285 788-1109 6-391 (693)
46 PRK13351 elongation factor G; 99.9 1.2E-24 2.6E-29 277.9 26.4 298 789-1109 5-387 (687)
47 PRK12739 elongation factor G; 99.9 9.9E-25 2.2E-29 278.2 24.2 284 789-1109 5-388 (691)
48 PRK07560 elongation factor EF- 99.9 1.4E-24 3.1E-29 278.1 23.4 288 789-1109 17-372 (731)
49 TIGR00484 EF-G translation elo 99.9 2.2E-24 4.8E-29 275.1 24.8 285 788-1109 6-389 (689)
50 PRK00741 prfC peptide chain re 99.9 1.6E-24 3.5E-29 266.6 21.9 296 790-1109 8-377 (526)
51 TIGR00503 prfC peptide chain r 99.9 1.6E-23 3.4E-28 258.0 25.3 295 790-1109 9-378 (527)
52 KOG0465 Mitochondrial elongati 99.9 2.4E-24 5.1E-29 254.1 16.1 276 789-1109 36-418 (721)
53 KOG0461 Selenocysteine-specifi 99.9 6.5E-24 1.4E-28 235.5 18.0 242 794-1089 7-259 (522)
54 cd01884 EF_Tu EF-Tu subfamily. 99.9 8.3E-24 1.8E-28 230.2 15.4 154 795-994 3-173 (195)
55 PRK12740 elongation factor G; 99.9 1.9E-22 4.1E-27 257.4 26.5 289 800-1109 1-370 (668)
56 COG5257 GCD11 Translation init 99.9 2.1E-23 4.6E-28 231.0 14.7 224 794-1053 10-256 (415)
57 TIGR00490 aEF-2 translation el 99.9 6.3E-23 1.4E-27 262.4 18.3 280 789-1109 16-371 (720)
58 KOG0463 GTP-binding protein GP 99.9 7.8E-24 1.7E-28 236.3 7.4 291 791-1114 130-456 (641)
59 PLN00116 translation elongatio 99.9 2.4E-22 5.2E-27 260.5 19.6 133 788-922 15-163 (843)
60 KOG0464 Elongation factor G [T 99.9 3.9E-23 8.6E-28 232.6 7.3 292 784-1112 29-419 (753)
61 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.8E-22 1.9E-26 206.5 16.9 165 795-1003 1-165 (168)
62 COG4108 PrfC Peptide chain rel 99.9 4.3E-21 9.4E-26 220.3 19.4 247 796-1054 14-335 (528)
63 PTZ00416 elongation factor 2; 99.9 4.9E-21 1.1E-25 248.0 21.3 126 789-922 16-157 (836)
64 cd01886 EF-G Elongation factor 99.9 3.6E-21 7.8E-26 219.5 17.4 125 796-922 1-129 (270)
65 PF11987 IF-2: Translation-ini 99.9 2.8E-22 6.1E-27 197.0 6.8 92 1137-1234 14-108 (108)
66 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.1E-21 2.3E-26 215.7 11.8 188 797-1015 2-205 (208)
67 cd04165 GTPBP1_like GTPBP1-lik 99.9 3.2E-21 6.9E-26 214.3 15.6 184 797-1001 2-220 (224)
68 cd01888 eIF2_gamma eIF2-gamma 99.9 3.4E-21 7.4E-26 211.0 15.1 175 796-1003 2-198 (203)
69 cd01883 EF1_alpha Eukaryotic e 99.9 1.8E-21 3.8E-26 215.7 12.0 174 796-1013 1-214 (219)
70 cd01889 SelB_euk SelB subfamil 99.9 8.4E-21 1.8E-25 205.6 16.2 180 796-1006 2-188 (192)
71 cd04168 TetM_like Tet(M)-like 99.8 5.4E-21 1.2E-25 214.3 15.0 196 796-1004 1-235 (237)
72 cd04171 SelB SelB subfamily. 99.8 1.7E-20 3.6E-25 195.5 16.9 157 796-1000 2-162 (164)
73 cd01885 EF2 EF2 (for archaea a 99.8 7.3E-21 1.6E-25 210.9 13.2 120 797-922 3-138 (222)
74 KOG0468 U5 snRNP-specific prot 99.8 1E-20 2.2E-25 223.5 14.9 185 725-922 53-262 (971)
75 KOG0459 Polypeptide release fa 99.8 5.3E-21 1.1E-25 217.3 11.8 278 793-1115 78-391 (501)
76 cd01890 LepA LepA subfamily. 99.8 1.4E-20 3E-25 200.1 13.5 161 793-1003 1-176 (179)
77 cd04169 RF3 RF3 subfamily. Pe 99.8 2E-20 4.3E-25 213.2 15.4 129 792-922 2-136 (267)
78 KOG1143 Predicted translation 99.8 2.1E-20 4.4E-25 209.4 14.7 282 796-1114 169-491 (591)
79 cd01891 TypA_BipA TypA (tyrosi 99.8 5.4E-20 1.2E-24 199.6 14.8 157 792-996 2-174 (194)
80 cd03703 aeIF5B_II aeIF5B_II: T 99.8 5E-20 1.1E-24 179.5 10.4 108 1017-1124 1-108 (110)
81 cd00881 GTP_translation_factor 99.8 2.6E-19 5.7E-24 190.9 14.0 169 797-1003 2-186 (189)
82 cd04167 Snu114p Snu114p subfam 99.8 3.9E-19 8.4E-24 196.1 13.3 173 793-993 1-192 (213)
83 COG1159 Era GTPase [General fu 99.8 3.1E-18 6.6E-23 191.8 19.4 215 791-1059 3-252 (298)
84 cd04170 EF-G_bact Elongation f 99.8 8.3E-19 1.8E-23 200.2 14.0 125 796-922 1-129 (268)
85 PRK15494 era GTPase Era; Provi 99.8 4.5E-18 9.7E-23 200.3 20.3 215 792-1063 50-300 (339)
86 PRK00089 era GTPase Era; Revie 99.8 1.1E-17 2.5E-22 193.0 22.1 217 791-1063 2-253 (292)
87 TIGR00436 era GTP-binding prot 99.8 1E-17 2.2E-22 191.6 21.4 210 796-1062 2-247 (270)
88 cd01894 EngA1 EngA1 subfamily. 99.7 8.5E-18 1.8E-22 173.7 13.8 147 798-1002 1-156 (157)
89 cd04124 RabL2 RabL2 subfamily. 99.7 2.5E-17 5.4E-22 173.2 17.2 153 796-1003 2-157 (161)
90 TIGR03594 GTPase_EngA ribosome 99.7 4.2E-17 9E-22 198.1 20.7 162 793-1004 171-344 (429)
91 PF02421 FeoB_N: Ferrous iron 99.7 6.9E-18 1.5E-22 176.5 11.8 147 796-999 2-156 (156)
92 TIGR03598 GTPase_YsxC ribosome 99.7 3.3E-17 7.2E-22 175.5 15.8 149 792-993 16-179 (179)
93 cd01897 NOG NOG1 is a nucleola 99.7 4.3E-17 9.3E-22 171.4 16.3 152 795-1002 1-166 (168)
94 cd01864 Rab19 Rab19 subfamily. 99.7 2.1E-17 4.6E-22 173.7 13.5 157 795-1002 4-164 (165)
95 PRK00093 GTP-binding protein D 99.7 8.4E-17 1.8E-21 195.9 20.7 160 794-1004 173-344 (435)
96 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.8E-17 3.9E-22 174.1 12.5 153 797-1000 2-165 (167)
97 cd01895 EngA2 EngA2 subfamily. 99.7 5.8E-17 1.3E-21 169.6 15.3 160 794-1002 2-173 (174)
98 cd04113 Rab4 Rab4 subfamily. 99.7 5.3E-17 1.1E-21 169.7 14.4 154 796-1001 2-159 (161)
99 cd04154 Arl2 Arl2 subfamily. 99.7 4.3E-17 9.3E-22 173.2 13.8 154 793-1000 13-171 (173)
100 KOG0467 Translation elongation 99.7 1.9E-17 4.2E-22 200.0 12.2 117 788-922 5-137 (887)
101 cd01861 Rab6 Rab6 subfamily. 99.7 5.5E-17 1.2E-21 169.2 14.1 155 796-1002 2-160 (161)
102 cd04145 M_R_Ras_like M-Ras/R-R 99.7 6.4E-17 1.4E-21 169.0 14.5 156 795-1003 3-163 (164)
103 cd01862 Rab7 Rab7 subfamily. 99.7 7.2E-17 1.6E-21 169.9 15.0 158 796-1004 2-167 (172)
104 cd04114 Rab30 Rab30 subfamily. 99.7 7.4E-17 1.6E-21 169.8 14.7 157 794-1002 7-167 (169)
105 cd04106 Rab23_lke Rab23-like s 99.7 8.2E-17 1.8E-21 168.0 14.5 156 796-1001 2-160 (162)
106 smart00175 RAB Rab subfamily o 99.7 1.8E-16 3.8E-21 165.5 16.5 156 796-1003 2-161 (164)
107 cd01879 FeoB Ferrous iron tran 99.7 5.9E-17 1.3E-21 168.0 12.8 147 799-1002 1-155 (158)
108 cd04119 RJL RJL (RabJ-Like) su 99.7 1E-16 2.3E-21 167.4 14.7 155 796-1002 2-165 (168)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.1E-16 2.4E-21 172.2 15.3 163 794-1004 3-170 (183)
110 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.2E-16 4.8E-21 172.3 17.8 160 796-1005 2-169 (201)
111 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.3E-16 2.9E-21 165.6 15.1 153 796-1002 3-160 (162)
112 PRK03003 GTP-binding protein D 99.7 2.3E-16 4.9E-21 193.9 19.7 161 793-1004 210-382 (472)
113 cd04151 Arl1 Arl1 subfamily. 99.7 1.1E-16 2.4E-21 167.3 14.4 151 797-1001 2-157 (158)
114 cd04126 Rab20 Rab20 subfamily. 99.7 3E-16 6.6E-21 174.1 18.5 201 796-1021 2-207 (220)
115 cd04120 Rab12 Rab12 subfamily. 99.7 1.7E-16 3.7E-21 174.0 15.6 157 796-1003 2-162 (202)
116 cd04157 Arl6 Arl6 subfamily. 99.7 1.1E-16 2.5E-21 166.8 13.6 152 797-1000 2-160 (162)
117 PTZ00369 Ras-like protein; Pro 99.7 2.1E-16 4.7E-21 170.8 16.1 162 794-1008 5-171 (189)
118 smart00173 RAS Ras subfamily o 99.7 2E-16 4.4E-21 165.6 15.2 155 796-1003 2-161 (164)
119 cd01866 Rab2 Rab2 subfamily. 99.7 1.8E-16 4E-21 167.6 14.9 157 795-1003 5-165 (168)
120 COG1160 Predicted GTPases [Gen 99.7 9.8E-17 2.1E-21 188.6 14.1 152 795-1004 4-165 (444)
121 cd01867 Rab8_Rab10_Rab13_like 99.7 2E-16 4.3E-21 167.1 14.4 157 795-1003 4-164 (167)
122 cd01898 Obg Obg subfamily. Th 99.7 1.9E-16 4E-21 166.7 14.1 151 796-1002 2-169 (170)
123 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.1E-16 4.6E-21 166.1 14.5 156 796-1003 4-163 (166)
124 cd04122 Rab14 Rab14 subfamily. 99.7 2.5E-16 5.4E-21 166.0 14.8 155 796-1002 4-162 (166)
125 PRK04213 GTP-binding protein; 99.7 2.3E-16 4.9E-21 171.8 14.9 158 793-1003 8-191 (201)
126 PRK03003 GTP-binding protein D 99.7 1.8E-16 3.8E-21 194.9 15.5 152 794-1003 38-198 (472)
127 cd00877 Ran Ran (Ras-related n 99.7 2.3E-16 5E-21 167.0 14.2 154 796-1003 2-158 (166)
128 PF14578 GTP_EFTU_D4: Elongati 99.7 5.5E-17 1.2E-21 149.8 8.2 80 1252-1348 2-81 (81)
129 cd01860 Rab5_related Rab5-rela 99.7 2.5E-16 5.5E-21 164.5 14.1 157 795-1003 2-162 (163)
130 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.4E-16 7.4E-21 166.9 15.1 156 795-1003 3-163 (172)
131 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.7E-16 3.7E-21 165.5 12.5 153 797-1001 2-159 (160)
132 cd04136 Rap_like Rap-like subf 99.7 3.1E-16 6.7E-21 163.7 14.3 155 795-1002 2-161 (163)
133 cd04175 Rap1 Rap1 subgroup. T 99.7 3.5E-16 7.5E-21 164.2 14.7 156 795-1003 2-162 (164)
134 cd04132 Rho4_like Rho4-like su 99.7 7.2E-16 1.6E-20 165.6 17.5 163 796-1005 2-168 (187)
135 TIGR03594 GTPase_EngA ribosome 99.7 1.9E-16 4.2E-21 192.4 14.6 150 796-1003 1-159 (429)
136 cd04127 Rab27A Rab27a subfamil 99.7 3.7E-16 8.1E-21 166.5 15.0 167 795-1003 5-176 (180)
137 cd04116 Rab9 Rab9 subfamily. 99.7 4.1E-16 8.9E-21 164.6 14.9 155 795-1001 6-168 (170)
138 TIGR00231 small_GTP small GTP- 99.7 3E-16 6.6E-21 160.1 13.4 151 795-999 2-159 (161)
139 cd04159 Arl10_like Arl10-like 99.7 3.3E-16 7.2E-21 161.1 13.8 152 797-1001 2-158 (159)
140 cd01863 Rab18 Rab18 subfamily. 99.7 3.4E-16 7.4E-21 163.4 14.0 153 796-1001 2-159 (161)
141 cd04140 ARHI_like ARHI subfami 99.7 4.3E-16 9.4E-21 164.1 14.8 154 796-1002 3-163 (165)
142 cd04144 Ras2 Ras2 subfamily. 99.7 3.8E-16 8.3E-21 169.0 14.7 155 797-1004 2-163 (190)
143 cd01865 Rab3 Rab3 subfamily. 99.7 4.7E-16 1E-20 163.9 15.0 156 796-1003 3-162 (165)
144 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.5E-16 5.3E-21 164.1 12.7 151 797-1001 2-157 (158)
145 cd04115 Rab33B_Rab33A Rab33B/R 99.7 4.6E-16 9.9E-21 164.9 14.6 158 793-1002 1-167 (170)
146 cd01874 Cdc42 Cdc42 subfamily. 99.7 6.5E-16 1.4E-20 165.3 15.9 166 796-1001 3-172 (175)
147 cd04163 Era Era subfamily. Er 99.7 8.8E-16 1.9E-20 158.9 16.4 157 793-1002 2-167 (168)
148 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 4.2E-16 9.2E-21 166.2 14.0 152 795-1000 16-172 (174)
149 PLN03071 GTP-binding nuclear p 99.7 6.8E-16 1.5E-20 171.3 15.8 158 792-1003 11-171 (219)
150 cd00879 Sar1 Sar1 subfamily. 99.7 3.6E-16 7.8E-21 168.4 13.2 167 792-1002 17-189 (190)
151 cd04110 Rab35 Rab35 subfamily. 99.7 5.3E-16 1.2E-20 169.3 14.6 157 795-1003 7-166 (199)
152 cd01868 Rab11_like Rab11-like. 99.7 6E-16 1.3E-20 162.4 14.3 156 795-1002 4-163 (165)
153 cd01878 HflX HflX subfamily. 99.7 5.5E-16 1.2E-20 169.3 14.4 150 794-1002 41-203 (204)
154 cd04149 Arf6 Arf6 subfamily. 99.7 4.9E-16 1.1E-20 165.1 13.6 153 794-1000 9-166 (168)
155 KOG0466 Translation initiation 99.7 3.6E-17 7.9E-22 179.9 5.0 224 794-1053 38-295 (466)
156 cd04150 Arf1_5_like Arf1-Arf5- 99.7 6E-16 1.3E-20 162.7 14.0 151 796-1000 2-157 (159)
157 cd04112 Rab26 Rab26 subfamily. 99.7 7.3E-16 1.6E-20 166.9 15.1 158 796-1005 2-164 (191)
158 cd04135 Tc10 TC10 subfamily. 99.7 9.6E-16 2.1E-20 162.3 15.5 166 796-1001 2-171 (174)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1E-15 2.2E-20 157.8 15.2 144 796-1002 3-155 (157)
160 cd00154 Rab Rab family. Rab G 99.7 9.5E-16 2.1E-20 157.5 14.8 153 796-1000 2-158 (159)
161 cd04134 Rho3 Rho3 subfamily. 99.7 6.2E-16 1.3E-20 167.3 14.0 168 796-1003 2-173 (189)
162 PRK00454 engB GTP-binding prot 99.7 1.6E-15 3.5E-20 163.9 17.1 156 793-1003 23-193 (196)
163 PRK00093 GTP-binding protein D 99.7 5.6E-16 1.2E-20 188.7 15.2 149 795-1001 2-159 (435)
164 smart00174 RHO Rho (Ras homolo 99.7 1.3E-15 2.9E-20 161.2 16.1 166 797-1002 1-170 (174)
165 cd01893 Miro1 Miro1 subfamily. 99.7 1.7E-15 3.6E-20 160.0 16.7 157 796-1002 2-162 (166)
166 cd04176 Rap2 Rap2 subgroup. T 99.7 8.2E-16 1.8E-20 161.1 13.9 154 796-1002 3-161 (163)
167 smart00178 SAR Sar1p-like memb 99.7 1E-15 2.2E-20 165.0 14.8 162 793-1001 16-182 (184)
168 cd04139 RalA_RalB RalA/RalB su 99.7 1.2E-15 2.7E-20 158.9 15.0 155 796-1003 2-161 (164)
169 smart00177 ARF ARF-like small 99.7 1.2E-15 2.6E-20 163.0 15.2 155 794-1002 13-172 (175)
170 cd04123 Rab21 Rab21 subfamily. 99.7 1E-15 2.2E-20 159.0 14.2 155 796-1002 2-160 (162)
171 cd04158 ARD1 ARD1 subfamily. 99.7 9.5E-16 2.1E-20 162.6 14.1 153 797-1002 2-159 (169)
172 cd04147 Ras_dva Ras-dva subfam 99.7 1E-15 2.2E-20 166.8 14.6 157 797-1004 2-163 (198)
173 PRK15467 ethanolamine utilizat 99.7 5E-16 1.1E-20 163.7 11.7 142 796-1005 3-148 (158)
174 cd01875 RhoG RhoG subfamily. 99.6 1.5E-15 3.3E-20 164.8 15.6 171 793-1003 2-176 (191)
175 PLN00223 ADP-ribosylation fact 99.6 1.6E-15 3.4E-20 163.3 15.6 156 794-1003 17-177 (181)
176 cd04142 RRP22 RRP22 subfamily. 99.6 1.1E-15 2.4E-20 167.1 14.3 156 796-1002 2-172 (198)
177 COG1160 Predicted GTPases [Gen 99.6 3.3E-15 7.2E-20 175.8 18.6 163 793-1004 177-351 (444)
178 cd04109 Rab28 Rab28 subfamily. 99.6 1.6E-15 3.5E-20 167.6 15.1 158 796-1004 2-166 (215)
179 PRK09518 bifunctional cytidyla 99.6 1.4E-15 3.1E-20 195.2 16.6 152 794-1003 275-435 (712)
180 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.3E-15 4.9E-20 160.3 15.3 159 796-1004 2-165 (170)
181 cd04137 RheB Rheb (Ras Homolog 99.6 2.3E-15 5.1E-20 160.5 15.5 156 796-1004 3-163 (180)
182 cd04121 Rab40 Rab40 subfamily. 99.6 2.2E-15 4.7E-20 163.6 15.3 157 795-1003 7-166 (189)
183 cd00157 Rho Rho (Ras homology) 99.6 2.4E-15 5.1E-20 158.3 15.1 165 796-1001 2-170 (171)
184 PTZ00133 ADP-ribosylation fact 99.6 2E-15 4.2E-20 162.7 14.8 159 795-1007 18-181 (182)
185 PLN03110 Rab GTPase; Provision 99.6 3.9E-15 8.5E-20 164.8 17.3 160 795-1006 13-176 (216)
186 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.2E-15 4.9E-20 157.7 14.6 156 796-1002 2-162 (164)
187 PLN03118 Rab family protein; P 99.6 3.2E-15 7E-20 164.5 16.6 157 794-1003 14-176 (211)
188 smart00176 RAN Ran (Ras-relate 99.6 1.6E-15 3.5E-20 166.1 14.0 150 800-1003 1-153 (200)
189 cd01870 RhoA_like RhoA-like su 99.6 1.7E-15 3.7E-20 160.6 13.7 167 796-1002 3-173 (175)
190 cd01871 Rac1_like Rac1-like su 99.6 2.7E-15 5.8E-20 160.4 15.3 167 795-1001 2-172 (174)
191 PRK09518 bifunctional cytidyla 99.6 1.8E-15 3.9E-20 194.3 16.6 160 794-1004 450-621 (712)
192 cd04128 Spg1 Spg1p. Spg1p (se 99.6 3.8E-15 8.2E-20 160.6 16.2 160 796-1003 2-165 (182)
193 cd00880 Era_like Era (E. coli 99.6 2.6E-15 5.7E-20 153.2 14.3 154 799-1002 1-162 (163)
194 cd04155 Arl3 Arl3 subfamily. 99.6 1.3E-15 2.7E-20 161.2 12.2 156 792-1001 12-172 (173)
195 cd04118 Rab24 Rab24 subfamily. 99.6 2.6E-15 5.6E-20 162.3 14.7 161 796-1004 2-166 (193)
196 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1E-15 2.2E-20 161.8 11.2 108 797-922 2-112 (164)
197 cd04143 Rhes_like Rhes_like su 99.6 1.6E-15 3.6E-20 171.2 13.5 156 796-1003 2-170 (247)
198 TIGR03156 GTP_HflX GTP-binding 99.6 2.4E-15 5.3E-20 177.7 14.6 148 795-1002 190-350 (351)
199 cd04146 RERG_RasL11_like RERG/ 99.6 3E-15 6.6E-20 157.4 13.8 154 797-1003 2-163 (165)
200 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.8E-15 6E-20 158.9 13.5 153 797-1000 2-165 (167)
201 TIGR02528 EutP ethanolamine ut 99.6 1.7E-15 3.7E-20 155.3 11.4 135 796-1000 2-141 (142)
202 cd04133 Rop_like Rop subfamily 99.6 5E-15 1.1E-19 159.0 15.4 164 796-1003 3-172 (176)
203 cd04125 RabA_like RabA-like su 99.6 5.6E-15 1.2E-19 159.3 15.9 158 796-1005 2-163 (188)
204 KOG0469 Elongation factor 2 [T 99.6 7.3E-16 1.6E-20 178.0 9.4 132 789-922 16-163 (842)
205 cd04177 RSR1 RSR1 subgroup. R 99.6 4.5E-15 9.7E-20 156.9 14.3 156 796-1003 3-163 (168)
206 cd04117 Rab15 Rab15 subfamily. 99.6 5.3E-15 1.1E-19 155.6 14.6 155 796-1002 2-160 (161)
207 PLN03108 Rab family protein; P 99.6 6.2E-15 1.3E-19 162.4 15.6 158 795-1004 7-168 (210)
208 cd04111 Rab39 Rab39 subfamily. 99.6 8.3E-15 1.8E-19 161.6 16.5 161 795-1006 3-168 (211)
209 COG0218 Predicted GTPase [Gene 99.6 1.1E-14 2.4E-19 155.8 16.6 160 793-1004 23-197 (200)
210 cd00876 Ras Ras family. The R 99.6 5.4E-15 1.2E-19 153.2 13.3 153 797-1002 2-159 (160)
211 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.2E-14 2.6E-19 156.8 16.4 167 795-1001 6-177 (182)
212 KOG1423 Ras-like GTPase ERA [C 99.6 1.1E-14 2.4E-19 161.8 16.0 187 789-1003 67-270 (379)
213 COG2229 Predicted GTPase [Gene 99.6 1.4E-14 3E-19 151.8 15.1 157 790-1001 6-175 (187)
214 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.1E-14 2.5E-19 154.7 14.8 165 796-1000 2-170 (173)
215 cd04131 Rnd Rnd subfamily. Th 99.6 1.8E-14 3.8E-19 154.9 16.4 166 796-1001 3-173 (178)
216 PRK09554 feoB ferrous iron tra 99.6 8.1E-15 1.7E-19 187.8 16.1 154 793-1003 2-167 (772)
217 PRK12299 obgE GTPase CgtA; Rev 99.6 1.9E-14 4.1E-19 169.0 17.8 153 797-1004 161-328 (335)
218 cd04105 SR_beta Signal recogni 99.6 9.5E-15 2.1E-19 160.3 14.1 187 795-1000 1-201 (203)
219 cd01881 Obg_like The Obg-like 99.6 8.8E-15 1.9E-19 154.5 13.1 151 799-1002 1-175 (176)
220 PRK05291 trmE tRNA modificatio 99.6 7E-15 1.5E-19 179.3 14.1 146 794-1003 215-369 (449)
221 PRK11058 GTPase HflX; Provisio 99.6 2.9E-14 6.2E-19 172.4 18.5 153 794-1004 197-362 (426)
222 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.5E-14 5.3E-19 160.0 16.6 170 794-1003 13-187 (232)
223 cd01892 Miro2 Miro2 subfamily. 99.6 8.2E-15 1.8E-19 155.8 12.0 158 795-1003 5-165 (169)
224 KOG0092 GTPase Rab5/YPT51 and 99.6 9.1E-15 2E-19 153.8 11.4 162 792-1005 3-168 (200)
225 TIGR02729 Obg_CgtA Obg family 99.6 1.9E-14 4.2E-19 168.7 15.5 152 796-1003 159-328 (329)
226 cd01876 YihA_EngB The YihA (En 99.6 3.5E-14 7.6E-19 147.5 15.8 153 797-1002 2-169 (170)
227 KOG1144 Translation initiation 99.6 5.2E-14 1.1E-18 169.2 19.1 88 507-599 216-305 (1064)
228 PF00025 Arf: ADP-ribosylation 99.6 1.3E-14 2.8E-19 155.4 12.7 157 793-1002 13-174 (175)
229 KOG0394 Ras-related GTPase [Ge 99.6 7.7E-15 1.7E-19 152.7 10.3 160 795-1003 10-177 (210)
230 PRK12298 obgE GTPase CgtA; Rev 99.6 3.2E-14 7E-19 170.1 16.2 156 797-1004 162-333 (390)
231 KOG0084 GTPase Rab1/YPT1, smal 99.6 3.1E-14 6.7E-19 150.4 13.8 162 794-1007 9-175 (205)
232 PRK12296 obgE GTPase CgtA; Rev 99.6 3.5E-14 7.6E-19 172.7 16.4 155 796-1005 161-341 (500)
233 KOG0098 GTPase Rab2, small G p 99.6 2.8E-14 6.1E-19 148.8 13.0 156 796-1003 8-167 (216)
234 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.9E-14 6.3E-19 158.5 14.0 112 796-922 3-118 (222)
235 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 5.6E-14 1.2E-18 147.7 14.9 164 790-1005 18-186 (221)
236 PRK12297 obgE GTPase CgtA; Rev 99.5 6.8E-14 1.5E-18 168.3 17.1 152 796-1004 160-327 (424)
237 PF10662 PduV-EutP: Ethanolami 99.5 2.3E-14 5.1E-19 147.2 11.1 135 797-1000 4-142 (143)
238 cd04148 RGK RGK subfamily. Th 99.5 5.3E-14 1.2E-18 156.4 14.5 154 796-1003 2-162 (221)
239 cd00882 Ras_like_GTPase Ras-li 99.5 4.3E-14 9.3E-19 142.1 12.2 151 799-1000 1-156 (157)
240 TIGR00450 mnmE_trmE_thdF tRNA 99.5 7.1E-14 1.5E-18 169.8 16.3 148 795-1004 204-360 (442)
241 cd04129 Rho2 Rho2 subfamily. 99.5 1.3E-13 2.8E-18 148.9 15.7 165 796-1002 3-171 (187)
242 KOG0078 GTP-binding protein SE 99.5 1.1E-13 2.4E-18 148.2 14.0 161 793-1005 11-175 (207)
243 PTZ00132 GTP-binding nuclear p 99.5 1.6E-13 3.4E-18 151.6 15.7 156 793-1002 8-166 (215)
244 KOG1532 GTPase XAB1, interacts 99.5 5.9E-14 1.3E-18 153.7 11.4 200 789-1006 14-266 (366)
245 PF00071 Ras: Ras family; Int 99.5 1.8E-13 4E-18 143.0 14.6 155 797-1003 2-160 (162)
246 COG5192 BMS1 GTP-binding prote 99.5 2.7E-14 5.9E-19 166.5 7.4 237 778-1071 52-307 (1077)
247 TIGR00437 feoB ferrous iron tr 99.5 1.2E-13 2.7E-18 173.2 13.2 146 801-1003 1-154 (591)
248 cd04103 Centaurin_gamma Centau 99.5 3.1E-13 6.8E-18 142.4 13.8 148 796-1001 2-156 (158)
249 cd01882 BMS1 Bms1. Bms1 is an 99.4 1E-12 2.2E-17 146.6 15.2 112 789-922 34-146 (225)
250 cd01873 RhoBTB RhoBTB subfamil 99.4 1.9E-12 4E-17 141.4 16.2 121 796-922 4-133 (195)
251 cd04104 p47_IIGP_like p47 (47- 99.4 4.2E-12 9.2E-17 138.7 18.0 176 795-1005 2-185 (197)
252 COG0370 FeoB Fe2+ transport sy 99.4 1.1E-12 2.3E-17 161.0 14.5 153 795-1004 4-164 (653)
253 cd01896 DRG The developmentall 99.4 2.2E-12 4.9E-17 144.6 15.8 82 796-893 2-90 (233)
254 KOG0086 GTPase Rab4, small G p 99.4 1.3E-12 2.7E-17 131.8 12.2 153 797-1001 12-168 (214)
255 KOG0093 GTPase Rab3, small G p 99.4 1.3E-12 2.7E-17 131.3 12.1 165 796-1012 23-191 (193)
256 COG0486 ThdF Predicted GTPase 99.4 1.1E-12 2.3E-17 155.3 13.3 149 796-1004 219-376 (454)
257 PRK09866 hypothetical protein; 99.4 4E-12 8.7E-17 155.0 17.4 113 857-1001 230-350 (741)
258 KOG0080 GTPase Rab18, small G 99.4 1.5E-12 3.3E-17 132.5 11.0 158 794-1003 11-173 (209)
259 KOG0095 GTPase Rab30, small G 99.4 3.4E-12 7.3E-17 128.2 12.8 156 796-1003 9-168 (213)
260 cd03692 mtIF2_IVc mtIF2_IVc: t 99.4 1.6E-12 3.5E-17 122.9 9.3 75 1264-1348 8-84 (84)
261 KOG0079 GTP-binding protein H- 99.4 2.4E-12 5.2E-17 129.3 10.9 156 797-1004 11-169 (198)
262 COG1100 GTPase SAR1 and relate 99.4 6.8E-12 1.5E-16 138.2 15.5 115 795-923 6-125 (219)
263 KOG0087 GTPase Rab11/YPT3, sma 99.4 3.6E-12 7.9E-17 136.1 12.5 161 797-1009 17-181 (222)
264 PF01926 MMR_HSR1: 50S ribosom 99.4 2.8E-12 6E-17 127.7 10.9 105 797-918 2-116 (116)
265 KOG0073 GTP-binding ADP-ribosy 99.3 1E-11 2.2E-16 127.6 13.0 157 793-1002 15-176 (185)
266 COG1084 Predicted GTPase [Gene 99.3 2.2E-11 4.7E-16 138.2 14.6 159 792-1007 166-339 (346)
267 cd04102 RabL3 RabL3 (Rab-like3 99.3 1.3E-11 2.9E-16 135.5 12.4 118 796-922 2-142 (202)
268 PRK13768 GTPase; Provisional 99.3 2E-11 4.2E-16 138.7 13.2 127 857-1003 97-246 (253)
269 COG3596 Predicted GTPase [Gene 99.3 2.2E-11 4.8E-16 135.3 12.1 175 791-1004 36-222 (296)
270 KOG0070 GTP-binding ADP-ribosy 99.3 1.3E-11 2.7E-16 130.1 9.1 155 796-1004 19-178 (181)
271 PLN00023 GTP-binding protein; 99.3 2.3E-11 5E-16 140.5 12.0 130 792-922 19-164 (334)
272 KOG1489 Predicted GTP-binding 99.3 3E-11 6.5E-16 135.8 12.2 148 797-1001 199-364 (366)
273 KOG0088 GTPase Rab21, small G 99.2 2E-11 4.3E-16 124.0 9.1 156 795-1002 14-173 (218)
274 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 9.7E-11 2.1E-15 127.8 15.3 110 796-922 2-129 (196)
275 COG2262 HflX GTPases [General 99.2 4.9E-11 1.1E-15 139.1 13.2 153 793-1005 191-357 (411)
276 KOG0076 GTP-binding ADP-ribosy 99.2 2.3E-11 5E-16 126.1 9.3 163 795-1005 18-188 (197)
277 PF09439 SRPRB: Signal recogni 99.2 3.2E-11 7E-16 129.3 10.5 112 793-922 2-125 (181)
278 PF08477 Miro: Miro-like prote 99.2 1.8E-11 3.8E-16 121.8 7.8 105 797-920 2-119 (119)
279 cd01850 CDC_Septin CDC/Septin. 99.2 1.2E-10 2.6E-15 133.9 15.3 113 795-922 5-156 (276)
280 KOG0097 GTPase Rab14, small G 99.2 8E-11 1.7E-15 117.3 11.0 150 797-998 14-167 (215)
281 KOG0395 Ras-related GTPase [Ge 99.2 7.8E-11 1.7E-15 128.7 11.0 160 793-1005 2-166 (196)
282 PF03029 ATP_bind_1: Conserved 99.2 4.8E-11 1E-15 134.2 9.3 132 858-1003 92-236 (238)
283 KOG0091 GTPase Rab39, small G 99.2 1.5E-10 3.3E-15 118.5 12.0 160 796-1006 10-175 (213)
284 KOG0075 GTP-binding ADP-ribosy 99.2 6.9E-11 1.5E-15 119.1 9.3 154 797-1003 23-181 (186)
285 COG0536 Obg Predicted GTPase [ 99.1 3.3E-10 7.2E-15 129.1 14.2 157 797-1007 162-336 (369)
286 PTZ00099 rab6; Provisional 99.1 1.9E-10 4.2E-15 123.7 11.5 109 858-1004 30-142 (176)
287 KOG0090 Signal recognition par 99.1 3.2E-10 7E-15 121.5 13.0 173 795-1001 39-236 (238)
288 cd01899 Ygr210 Ygr210 subfamil 99.1 4E-10 8.6E-15 131.7 14.8 95 797-891 1-110 (318)
289 KOG0081 GTPase Rab27, small G 99.1 8.4E-11 1.8E-15 119.5 7.8 170 797-1009 12-186 (219)
290 COG1163 DRG Predicted GTPase [ 99.1 5.9E-10 1.3E-14 126.1 13.4 81 796-892 65-152 (365)
291 KOG1191 Mitochondrial GTPase [ 99.1 7.2E-10 1.6E-14 131.0 12.4 159 794-1003 268-449 (531)
292 PRK09435 membrane ATPase/prote 99.1 6.7E-10 1.5E-14 130.0 12.2 113 856-1004 148-260 (332)
293 KOG0072 GTP-binding ADP-ribosy 99.1 3.9E-10 8.4E-15 113.5 8.2 158 793-1004 17-179 (182)
294 TIGR00073 hypB hydrogenase acc 99.0 6E-10 1.3E-14 122.8 10.1 167 793-1002 21-205 (207)
295 smart00053 DYNc Dynamin, GTPas 99.0 1.9E-09 4.1E-14 121.1 13.9 132 791-922 23-205 (240)
296 KOG0083 GTPase Rab26/Rab37, sm 99.0 1.5E-10 3.3E-15 114.5 3.7 152 799-1001 2-157 (192)
297 KOG4252 GTP-binding protein [S 99.0 6.8E-10 1.5E-14 115.1 7.2 208 791-1053 17-228 (246)
298 PRK09602 translation-associate 99.0 5.1E-09 1.1E-13 126.0 14.6 97 795-891 2-113 (396)
299 KOG0071 GTP-binding ADP-ribosy 98.9 3.6E-09 7.8E-14 106.1 10.2 151 797-1003 20-177 (180)
300 COG4917 EutP Ethanolamine util 98.9 2.6E-09 5.6E-14 105.6 8.3 136 797-1001 4-143 (148)
301 TIGR00750 lao LAO/AO transport 98.9 5.5E-09 1.2E-13 121.7 12.6 113 855-1003 125-237 (300)
302 KOG0393 Ras-related small GTPa 98.9 3.6E-09 7.9E-14 114.3 8.8 171 793-1002 3-177 (198)
303 KOG0074 GTP-binding ADP-ribosy 98.9 4E-09 8.6E-14 105.9 8.1 155 793-1000 16-175 (185)
304 KOG0410 Predicted GTP binding 98.9 9.5E-09 2.1E-13 115.9 11.2 148 791-1002 175-339 (410)
305 KOG2486 Predicted GTPase [Gene 98.9 4.3E-09 9.2E-14 117.0 8.1 165 792-1002 134-314 (320)
306 PF05049 IIGP: Interferon-indu 98.8 3.4E-08 7.4E-13 116.7 14.4 170 795-1004 36-218 (376)
307 PF00350 Dynamin_N: Dynamin fa 98.8 1.2E-08 2.7E-13 107.7 9.8 64 856-919 100-168 (168)
308 cd01853 Toc34_like Toc34-like 98.8 6.8E-08 1.5E-12 109.5 16.3 116 791-922 28-162 (249)
309 TIGR00101 ureG urease accessor 98.8 2.2E-08 4.7E-13 110.0 10.5 101 857-1002 92-194 (199)
310 cd03702 IF2_mtIF2_II This fami 98.8 2.3E-08 5E-13 96.7 9.0 89 1018-1122 2-91 (95)
311 KOG1490 GTP-binding protein CR 98.8 1.9E-08 4.2E-13 118.8 9.2 156 793-1000 167-337 (620)
312 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 1.6E-07 3.5E-12 105.1 16.1 149 797-989 2-162 (232)
313 KOG0077 Vesicle coat complex C 98.7 1.7E-08 3.7E-13 104.3 7.1 110 795-923 21-135 (193)
314 PTZ00258 GTP-binding protein; 98.7 1.2E-07 2.6E-12 113.3 15.2 99 792-891 19-126 (390)
315 TIGR00991 3a0901s02IAP34 GTP-b 98.7 3.7E-07 7.9E-12 105.6 18.4 115 792-922 36-166 (313)
316 PRK10463 hydrogenase nickel in 98.7 2.7E-08 5.8E-13 114.1 8.3 166 793-1001 103-286 (290)
317 PF03308 ArgK: ArgK protein; 98.6 5.1E-08 1.1E-12 109.0 7.1 173 792-1004 27-230 (266)
318 PF00735 Septin: Septin; Inte 98.6 3E-07 6.5E-12 106.1 13.3 115 795-922 5-155 (281)
319 COG1703 ArgK Putative periplas 98.6 1.9E-07 4.2E-12 105.6 10.8 178 790-1004 47-254 (323)
320 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 1.1E-07 2.5E-12 100.3 7.9 154 795-1002 11-167 (216)
321 cd03701 IF2_IF5B_II IF2_IF5B_I 98.6 2.5E-07 5.3E-12 89.8 9.7 87 1018-1121 2-90 (95)
322 KOG1954 Endocytosis/signaling 98.6 1.2E-06 2.6E-11 100.3 16.4 134 789-922 53-224 (532)
323 KOG0052 Translation elongation 98.6 2.7E-08 5.8E-13 116.0 2.7 66 857-922 82-155 (391)
324 KOG3883 Ras family small GTPas 98.5 6.2E-07 1.3E-11 91.6 11.9 117 793-922 8-131 (198)
325 KOG1707 Predicted Ras related/ 98.5 1.7E-07 3.7E-12 113.1 8.9 118 791-924 6-130 (625)
326 COG0378 HypB Ni2+-binding GTPa 98.5 1E-07 2.2E-12 102.1 6.0 163 795-1002 14-199 (202)
327 TIGR02836 spore_IV_A stage IV 98.5 4E-07 8.6E-12 107.3 10.6 121 795-921 18-192 (492)
328 PF04548 AIG1: AIG1 family; I 98.5 1.8E-06 4E-11 95.7 14.9 110 796-922 2-129 (212)
329 cd01859 MJ1464 MJ1464. This f 98.4 9.2E-07 2E-11 92.9 9.5 95 870-1004 2-96 (156)
330 PRK14974 cell division protein 98.4 8.9E-07 1.9E-11 104.3 9.3 63 857-922 223-292 (336)
331 COG5019 CDC3 Septin family pro 98.4 3.2E-06 7E-11 98.3 12.9 116 792-922 21-175 (373)
332 PRK14722 flhF flagellar biosyn 98.3 1.6E-06 3.4E-11 103.3 9.8 130 793-922 136-294 (374)
333 KOG4423 GTP-binding protein-li 98.3 1.3E-07 2.9E-12 99.3 0.6 163 789-1002 22-192 (229)
334 PRK10416 signal recognition pa 98.2 3.7E-06 8E-11 98.8 10.4 65 856-922 196-272 (318)
335 cd01900 YchF YchF subfamily. 98.2 1.5E-06 3.2E-11 99.9 6.8 95 797-892 1-104 (274)
336 PRK09601 GTP-binding protein Y 98.2 3.7E-06 8.1E-11 99.7 9.0 97 795-892 3-108 (364)
337 TIGR00157 ribosome small subun 98.2 4.2E-06 9.1E-11 95.0 9.1 95 868-1001 24-120 (245)
338 TIGR00064 ftsY signal recognit 98.2 5.4E-06 1.2E-10 95.5 10.0 64 856-922 154-230 (272)
339 cd03112 CobW_like The function 98.2 5.6E-06 1.2E-10 87.7 9.3 63 856-921 86-158 (158)
340 cd01855 YqeH YqeH. YqeH is an 98.1 4.9E-06 1.1E-10 90.4 8.1 104 865-1003 19-124 (190)
341 TIGR01425 SRP54_euk signal rec 98.1 6.3E-06 1.4E-10 99.7 9.7 65 856-922 182-252 (429)
342 KOG1547 Septin CDC10 and relat 98.1 1.6E-05 3.6E-10 86.8 11.4 115 795-922 47-197 (336)
343 TIGR00993 3a0901s04IAP86 chlor 98.1 2.7E-05 5.8E-10 96.8 14.4 111 795-922 119-249 (763)
344 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.1E-05 2.4E-10 85.0 9.5 88 876-1002 4-93 (157)
345 KOG3905 Dynein light intermedi 98.1 7.6E-05 1.7E-09 84.7 16.1 67 908-1001 221-287 (473)
346 cd01856 YlqF YlqF. Proteins o 98.1 1.1E-05 2.4E-10 86.3 8.8 99 864-1004 2-101 (171)
347 KOG2655 Septin family protein 98.1 2.5E-05 5.4E-10 91.7 12.0 116 794-922 21-171 (366)
348 KOG1487 GTP-binding protein DR 98.0 1.1E-05 2.4E-10 89.1 8.3 81 796-894 61-150 (358)
349 cd01849 YlqF_related_GTPase Yl 98.0 3.5E-05 7.6E-10 81.1 12.0 83 882-1003 1-84 (155)
350 PRK00771 signal recognition pa 98.0 1.5E-05 3.2E-10 97.2 10.2 63 857-922 176-245 (437)
351 PF05783 DLIC: Dynein light in 98.0 7.9E-05 1.7E-09 91.5 16.3 87 792-893 23-113 (472)
352 PRK12289 GTPase RsgA; Reviewed 98.0 2.2E-05 4.9E-10 93.3 11.0 88 875-1002 84-173 (352)
353 KOG1673 Ras GTPases [General f 98.0 3.5E-05 7.6E-10 79.2 10.2 164 790-1000 16-182 (205)
354 PF00448 SRP54: SRP54-type pro 98.0 1.2E-05 2.7E-10 88.2 7.4 64 857-922 84-153 (196)
355 KOG1486 GTP-binding protein DR 98.0 4.1E-05 9E-10 84.2 11.2 80 796-893 64-152 (364)
356 PRK11889 flhF flagellar biosyn 98.0 2.6E-05 5.7E-10 92.6 10.5 64 857-922 321-390 (436)
357 TIGR03596 GTPase_YlqF ribosome 98.0 2E-05 4.4E-10 91.0 9.4 99 865-1005 5-104 (276)
358 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.4E-05 3.1E-10 84.2 6.9 55 794-867 102-157 (157)
359 PRK12726 flagellar biosynthesi 98.0 3.4E-05 7.4E-10 91.4 10.7 25 792-816 204-228 (407)
360 cd04178 Nucleostemin_like Nucl 97.9 1.5E-05 3.3E-10 85.7 6.9 56 793-867 116-172 (172)
361 PRK12727 flagellar biosynthesi 97.9 4.2E-05 9.1E-10 94.0 11.1 126 793-922 349-497 (559)
362 cd03696 selB_II selB_II: this 97.9 2.7E-05 5.8E-10 73.6 6.9 75 1264-1348 8-83 (83)
363 COG0523 Putative GTPases (G3E 97.9 8.7E-05 1.9E-09 87.2 12.3 126 795-923 2-159 (323)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.6E-05 7.8E-10 79.8 7.9 50 873-922 4-55 (141)
365 PRK00098 GTPase RsgA; Reviewed 97.8 4.9E-05 1.1E-09 88.8 9.3 84 878-1000 78-163 (298)
366 PF03193 DUF258: Protein of un 97.8 1.3E-05 2.7E-10 85.0 3.7 29 790-818 31-59 (161)
367 COG0012 Predicted GTPase, prob 97.8 3.7E-05 8E-10 90.2 7.8 98 795-892 3-109 (372)
368 PRK10867 signal recognition pa 97.8 6.3E-05 1.4E-09 91.7 10.1 63 856-921 183-252 (433)
369 PRK09563 rbgA GTPase YlqF; Rev 97.8 5.1E-05 1.1E-09 88.2 8.9 100 864-1005 7-107 (287)
370 cd03115 SRP The signal recogni 97.8 7.5E-05 1.6E-09 79.9 9.4 64 856-922 82-152 (173)
371 cd01849 YlqF_related_GTPase Yl 97.8 3.8E-05 8.3E-10 80.8 6.8 56 793-867 99-155 (155)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 3.7E-05 8.1E-10 79.7 6.5 53 796-867 85-138 (141)
373 TIGR00959 ffh signal recogniti 97.8 8.4E-05 1.8E-09 90.5 10.4 63 856-921 182-251 (428)
374 cd00066 G-alpha G protein alph 97.7 7.5E-05 1.6E-09 88.0 9.1 68 855-922 159-241 (317)
375 PRK12724 flagellar biosynthesi 97.7 0.00016 3.4E-09 87.2 11.8 128 792-922 221-372 (432)
376 cd01851 GBP Guanylate-binding 97.7 8.1E-05 1.7E-09 83.5 8.9 84 796-892 9-103 (224)
377 cd03693 EF1_alpha_II EF1_alpha 97.7 0.00013 2.8E-09 70.3 8.7 84 1015-1114 3-89 (91)
378 cd01855 YqeH YqeH. YqeH is an 97.7 5.2E-05 1.1E-09 82.4 6.5 54 795-867 128-190 (190)
379 cd03114 ArgK-like The function 97.7 8E-05 1.7E-09 78.2 7.3 58 856-920 91-148 (148)
380 PRK12288 GTPase RsgA; Reviewed 97.7 0.00033 7.1E-09 83.5 13.1 87 878-1001 118-205 (347)
381 PRK06731 flhF flagellar biosyn 97.7 0.00019 4.1E-09 82.6 10.6 128 793-922 74-224 (270)
382 PRK12723 flagellar biosynthesi 97.7 0.00025 5.4E-09 85.4 12.1 128 792-922 172-325 (388)
383 PRK14721 flhF flagellar biosyn 97.7 0.00031 6.8E-09 85.2 12.8 127 793-922 190-339 (420)
384 PRK09563 rbgA GTPase YlqF; Rev 97.6 8.5E-05 1.8E-09 86.4 7.4 56 793-867 120-176 (287)
385 PRK05703 flhF flagellar biosyn 97.6 0.00037 8E-09 85.2 12.8 126 794-922 221-370 (424)
386 TIGR03596 GTPase_YlqF ribosome 97.6 0.00013 2.7E-09 84.5 7.8 56 793-867 117-173 (276)
387 PRK01889 GTPase RsgA; Reviewed 97.6 0.00018 4E-09 86.1 9.4 82 878-999 110-192 (356)
388 TIGR03597 GTPase_YqeH ribosome 97.6 4.7E-05 1E-09 91.2 4.3 108 796-922 156-279 (360)
389 cd01856 YlqF YlqF. Proteins o 97.6 0.00013 2.9E-09 78.1 7.3 56 793-867 114-170 (171)
390 TIGR03348 VI_IcmF type VI secr 97.6 0.00035 7.6E-09 95.4 12.8 120 790-924 107-258 (1169)
391 PRK06995 flhF flagellar biosyn 97.6 0.00036 7.8E-09 85.9 11.6 24 794-817 256-279 (484)
392 PF02492 cobW: CobW/HypB/UreG, 97.6 5.7E-05 1.2E-09 81.6 4.1 125 795-922 1-154 (178)
393 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00054 1.2E-08 84.9 12.5 130 793-922 108-274 (749)
394 cd03110 Fer4_NifH_child This p 97.5 0.00055 1.2E-08 73.6 11.1 66 855-922 91-156 (179)
395 TIGR02475 CobW cobalamin biosy 97.5 0.00083 1.8E-08 80.0 13.5 25 793-817 3-27 (341)
396 TIGR00092 GTP-binding protein 97.5 0.00018 3.8E-09 85.7 7.7 97 795-892 3-109 (368)
397 PRK14723 flhF flagellar biosyn 97.5 0.0004 8.7E-09 89.2 11.2 126 794-922 185-336 (767)
398 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00034 7.4E-09 81.4 9.0 83 878-1000 76-160 (287)
399 TIGR03597 GTPase_YqeH ribosome 97.4 0.00043 9.4E-09 83.0 9.9 101 867-1001 50-150 (360)
400 KOG1534 Putative transcription 97.4 0.00032 7E-09 75.9 7.7 66 858-923 99-178 (273)
401 cd03693 EF1_alpha_II EF1_alpha 97.4 0.0004 8.8E-09 66.9 7.7 75 1263-1348 11-87 (91)
402 PRK12288 GTPase RsgA; Reviewed 97.4 0.00015 3.2E-09 86.4 5.7 25 794-818 205-229 (347)
403 PRK12289 GTPase RsgA; Reviewed 97.4 0.00017 3.7E-09 86.0 6.0 27 792-818 170-196 (352)
404 COG1419 FlhF Flagellar GTP-bin 97.4 0.00057 1.2E-08 81.5 10.2 122 794-922 203-351 (407)
405 cd03697 EFTU_II EFTU_II: Elong 97.4 0.00052 1.1E-08 65.6 8.0 82 1017-1112 1-85 (87)
406 KOG3886 GTP-binding protein [S 97.4 0.00039 8.5E-09 76.2 7.8 113 796-923 6-130 (295)
407 COG1161 Predicted GTPases [Gen 97.4 0.00035 7.5E-09 82.6 7.5 57 792-867 130-187 (322)
408 cd03694 GTPBP_II Domain II of 97.3 0.00073 1.6E-08 64.6 8.2 81 1017-1111 1-86 (87)
409 cd03698 eRF3_II_like eRF3_II_l 97.3 0.00092 2E-08 63.3 8.1 78 1016-1110 1-81 (83)
410 KOG0447 Dynamin-like GTP bindi 97.3 0.0025 5.4E-08 76.6 13.3 64 857-922 412-492 (980)
411 COG1162 Predicted GTPases [Gen 97.3 0.00028 6.1E-09 81.3 5.4 28 789-816 159-186 (301)
412 cd02038 FleN-like FleN is a me 97.3 0.0014 2.9E-08 68.1 9.8 106 796-921 2-109 (139)
413 cd01859 MJ1464 MJ1464. This f 97.2 0.00061 1.3E-08 71.6 7.1 54 795-867 102-156 (156)
414 KOG1491 Predicted GTP-binding 97.2 0.00061 1.3E-08 78.6 7.3 100 793-892 19-126 (391)
415 TIGR00157 ribosome small subun 97.2 0.00041 9E-09 78.9 6.0 26 792-817 118-143 (245)
416 cd02036 MinD Bacterial cell di 97.2 0.001 2.2E-08 70.9 8.6 63 858-922 64-127 (179)
417 PRK11537 putative GTP-binding 97.2 0.00077 1.7E-08 79.5 7.6 124 793-922 3-163 (318)
418 cd01342 Translation_Factor_II_ 97.1 0.0019 4.2E-08 58.7 8.2 70 1268-1347 13-82 (83)
419 KOG2485 Conserved ATP/GTP bind 97.1 0.00085 1.8E-08 76.9 6.8 56 795-866 144-205 (335)
420 COG0541 Ffh Signal recognition 97.1 0.0013 2.7E-08 78.7 8.2 123 793-921 99-251 (451)
421 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0008 1.7E-08 78.3 6.4 28 791-818 158-185 (287)
422 cd04089 eRF3_II eRF3_II: domai 97.0 0.0027 5.9E-08 59.9 8.2 77 1016-1110 1-80 (82)
423 PRK00098 GTPase RsgA; Reviewed 97.0 0.001 2.2E-08 77.9 6.2 27 792-818 162-188 (298)
424 KOG3887 Predicted small GTPase 97.0 0.0031 6.7E-08 69.6 9.4 113 795-922 28-148 (347)
425 smart00275 G_alpha G protein a 97.0 0.0024 5.2E-08 76.2 9.3 136 856-1003 183-333 (342)
426 COG3640 CooC CO dehydrogenase 96.9 0.0021 4.6E-08 71.3 7.8 62 857-921 134-197 (255)
427 cd03696 selB_II selB_II: this 96.9 0.0035 7.5E-08 59.3 8.3 68 1017-1100 1-71 (83)
428 cd03694 GTPBP_II Domain II of 96.9 0.0024 5.1E-08 61.1 7.2 76 1264-1347 8-86 (87)
429 cd03698 eRF3_II_like eRF3_II_l 96.9 0.0031 6.8E-08 59.6 7.9 73 1264-1347 9-82 (83)
430 PRK13796 GTPase YqeH; Provisio 96.9 0.0011 2.4E-08 79.8 5.8 55 795-868 161-221 (365)
431 cd04089 eRF3_II eRF3_II: domai 96.9 0.0035 7.6E-08 59.2 8.0 73 1263-1347 8-81 (82)
432 KOG3859 Septins (P-loop GTPase 96.9 0.003 6.6E-08 70.8 8.4 118 790-922 38-189 (406)
433 KOG1424 Predicted GTP-binding 96.9 0.00066 1.4E-08 82.0 3.5 59 795-872 315-376 (562)
434 smart00010 small_GTPase Small 96.9 0.0023 4.9E-08 63.6 6.9 86 796-922 2-90 (124)
435 cd02037 MRP-like MRP (Multiple 96.8 0.0045 9.8E-08 66.1 9.2 67 856-922 67-134 (169)
436 COG3523 IcmF Type VI protein s 96.8 0.0069 1.5E-07 81.1 12.0 117 793-925 124-272 (1188)
437 PRK13796 GTPase YqeH; Provisio 96.7 0.0058 1.3E-07 73.6 10.2 99 868-1002 57-157 (365)
438 cd03695 CysN_NodQ_II CysN_NodQ 96.7 0.0068 1.5E-07 57.2 8.1 39 1017-1055 1-39 (81)
439 KOG1029 Endocytic adaptor prot 96.7 0.016 3.4E-07 72.1 13.1 12 1165-1176 958-969 (1118)
440 cd03697 EFTU_II EFTU_II: Elong 96.7 0.0033 7.1E-08 60.1 5.8 76 1263-1347 7-84 (87)
441 cd03111 CpaE_like This protein 96.6 0.0059 1.3E-07 60.4 7.7 59 858-918 44-106 (106)
442 KOG1533 Predicted GTPase [Gene 96.6 0.0043 9.2E-08 68.6 7.1 67 857-923 97-177 (290)
443 cd03691 BipA_TypA_II BipA_TypA 96.6 0.01 2.2E-07 56.4 8.9 83 1017-1108 1-84 (86)
444 KOG0082 G-protein alpha subuni 96.6 0.005 1.1E-07 72.8 8.1 71 852-922 190-275 (354)
445 KOG2743 Cobalamin synthesis pr 96.6 0.024 5.3E-07 64.7 12.9 30 787-816 50-79 (391)
446 PRK13695 putative NTPase; Prov 96.6 0.0069 1.5E-07 65.0 8.5 43 876-920 92-137 (174)
447 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.0069 1.5E-07 57.0 7.5 94 796-917 1-99 (99)
448 cd03690 Tet_II Tet_II: This su 96.5 0.0087 1.9E-07 57.0 7.6 82 1015-1108 2-83 (85)
449 cd02042 ParA ParA and ParB of 96.5 0.008 1.7E-07 58.7 7.3 73 796-893 1-74 (104)
450 COG0552 FtsY Signal recognitio 96.4 0.0082 1.8E-07 70.1 8.4 27 791-817 136-162 (340)
451 KOG1029 Endocytic adaptor prot 96.4 0.028 6.1E-07 70.1 13.0 18 537-554 383-400 (1118)
452 cd04178 Nucleostemin_like Nucl 96.4 0.0073 1.6E-07 65.1 7.0 41 882-922 1-43 (172)
453 PF03144 GTP_EFTU_D2: Elongati 96.3 0.0078 1.7E-07 55.3 6.1 69 1031-1108 1-73 (74)
454 cd03695 CysN_NodQ_II CysN_NodQ 96.3 0.012 2.7E-07 55.5 7.4 64 1272-1347 17-80 (81)
455 PF03144 GTP_EFTU_D2: Elongati 96.3 0.008 1.7E-07 55.2 6.0 70 1270-1347 1-74 (74)
456 COG1162 Predicted GTPases [Gen 96.3 0.021 4.6E-07 66.2 10.4 123 878-1039 77-212 (301)
457 PF03205 MobB: Molybdopterin g 96.3 0.002 4.4E-08 67.1 2.1 23 795-817 1-23 (140)
458 TIGR01969 minD_arch cell divis 96.3 0.011 2.4E-07 66.7 8.1 64 856-921 108-172 (251)
459 KOG1707 Predicted Ras related/ 96.2 0.014 3E-07 71.9 8.9 107 797-922 428-539 (625)
460 PTZ00266 NIMA-related protein 96.2 0.028 6.1E-07 74.8 12.5 30 1200-1229 978-1008(1021)
461 cd04088 EFG_mtEFG_II EFG_mtEFG 96.2 0.016 3.5E-07 54.6 7.4 80 1018-1108 2-81 (83)
462 PF13401 AAA_22: AAA domain; P 96.1 0.004 8.6E-08 62.9 3.1 116 795-918 5-125 (131)
463 PHA02518 ParA-like protein; Pr 96.1 0.015 3.2E-07 63.9 7.9 63 857-921 77-145 (211)
464 KOG0066 eIF2-interacting prote 96.1 0.0036 7.8E-08 73.8 2.8 22 796-817 615-636 (807)
465 KOG0781 Signal recognition par 96.0 0.013 2.9E-07 70.4 7.3 132 791-922 375-543 (587)
466 PRK13849 putative crown gall t 96.0 0.0092 2E-07 67.4 5.7 63 856-920 83-151 (231)
467 PRK12736 elongation factor Tu; 96.0 0.028 6E-07 68.5 10.1 84 1254-1348 210-295 (394)
468 cd01342 Translation_Factor_II_ 95.8 0.048 1E-06 49.4 8.7 50 1017-1066 1-50 (83)
469 KOG0780 Signal recognition par 95.8 0.011 2.4E-07 69.4 5.3 27 790-816 97-123 (483)
470 cd04092 mtEFG2_II_like mtEFG2_ 95.8 0.032 6.9E-07 52.7 7.5 80 1018-1109 2-82 (83)
471 KOG4181 Uncharacterized conser 95.8 0.021 4.6E-07 66.1 7.3 24 795-818 189-212 (491)
472 cd02032 Bchl_like This family 95.8 0.043 9.4E-07 63.0 10.0 64 857-921 116-184 (267)
473 PLN03126 Elongation factor Tu; 95.6 0.021 4.6E-07 71.0 7.4 77 1263-1348 296-374 (478)
474 PRK10751 molybdopterin-guanine 95.6 0.04 8.6E-07 59.6 8.4 26 792-817 4-29 (173)
475 KOG0163 Myosin class VI heavy 95.6 0.087 1.9E-06 65.7 12.0 14 908-921 1190-1203(1259)
476 PRK12735 elongation factor Tu; 95.6 0.05 1.1E-06 66.4 10.3 77 1263-1348 219-297 (396)
477 KOG0446 Vacuolar sorting prote 95.5 0.015 3.2E-07 74.7 5.6 133 789-922 24-212 (657)
478 PRK00049 elongation factor Tu; 95.5 0.031 6.6E-07 68.2 7.9 78 1263-1349 219-298 (396)
479 KOG2484 GTPase [General functi 95.4 0.011 2.4E-07 69.8 3.6 58 791-867 249-307 (435)
480 TIGR00483 EF-1_alpha translati 95.4 0.032 6.9E-07 68.7 7.7 82 1254-1348 227-310 (426)
481 PF01656 CbiA: CobQ/CobB/MinD/ 95.4 0.017 3.8E-07 62.2 4.7 64 857-922 95-161 (195)
482 TIGR00485 EF-Tu translation el 95.3 0.077 1.7E-06 64.7 10.5 76 1264-1348 218-295 (394)
483 cd01120 RecA-like_NTPases RecA 95.3 0.032 7E-07 57.7 6.4 22 796-817 1-22 (165)
484 PF13671 AAA_33: AAA domain; P 95.3 0.014 3E-07 60.0 3.4 20 796-815 1-20 (143)
485 cd04091 mtEFG1_II_like mtEFG1_ 95.2 0.07 1.5E-06 50.2 7.7 79 1017-1108 1-79 (81)
486 COG1618 Predicted nucleotide k 95.2 0.24 5.1E-06 52.7 12.1 121 796-921 7-142 (179)
487 TIGR03499 FlhF flagellar biosy 95.2 0.016 3.4E-07 67.5 4.0 25 793-817 193-217 (282)
488 smart00382 AAA ATPases associa 95.2 0.069 1.5E-06 52.9 8.1 25 794-818 2-26 (148)
489 PLN00043 elongation factor 1-a 95.1 0.043 9.4E-07 67.9 7.7 75 1263-1348 240-316 (447)
490 PRK01889 GTPase RsgA; Reviewed 95.1 0.019 4.1E-07 69.0 4.5 23 795-817 196-218 (356)
491 cd03689 RF3_II RF3_II: this su 95.1 0.076 1.7E-06 50.6 7.7 79 1020-1109 2-83 (85)
492 CHL00071 tufA elongation facto 95.0 0.058 1.3E-06 66.1 8.2 75 1264-1348 228-305 (409)
493 PRK12337 2-phosphoglycerate ki 95.0 0.13 2.7E-06 63.3 10.9 25 793-817 254-278 (475)
494 cd03688 eIF2_gamma_II eIF2_gam 95.0 0.12 2.6E-06 51.6 8.7 39 1014-1052 3-49 (113)
495 TIGR01281 DPOR_bchL light-inde 95.0 0.1 2.2E-06 60.0 9.7 65 856-921 115-184 (268)
496 PRK12317 elongation factor 1-a 95.0 0.049 1.1E-06 67.0 7.5 82 1254-1348 225-308 (425)
497 cd02117 NifH_like This family 94.9 0.093 2E-06 58.3 8.9 66 856-921 116-187 (212)
498 PRK10512 selenocysteinyl-tRNA- 94.9 0.064 1.4E-06 68.9 8.5 103 1229-1348 154-258 (614)
499 TIGR03371 cellulose_yhjQ cellu 94.9 0.072 1.6E-06 60.1 8.0 124 795-920 2-179 (246)
500 COG3276 SelB Selenocysteine-sp 94.8 0.074 1.6E-06 64.1 8.1 103 1229-1348 150-254 (447)
No 1
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-185 Score=1609.63 Aligned_cols=858 Identities=69% Similarity=1.038 Sum_probs=722.5
Q ss_pred CCCCCCcchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000625 500 DGKSKGPEKKMSKQVREMQEALARRKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKEKLLKKKQEGK 579 (1384)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ee~~~~eEEE~~~~eeEe~~~~eeeer~~~e~~~~k~~~~kek~~~~k~e~~ 579 (1384)
....+...++....++.||+.++++++++|+++|++||+.|+++|++++++++|++.+|.++++++++++++++++++|+
T Consensus 202 ~ak~Kk~~kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGk 281 (1064)
T KOG1144|consen 202 EAKGKKAEKKKPKGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGK 281 (1064)
T ss_pred chhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34445556667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHcC--CCCCCCCCCccccCCcccccccccccccCCCCCCcccchhhhhhHHhhhhhhhc
Q 000625 580 LLTGKQKEEARRLEAMRNQFLAKG--IPLPTGDKEAASKRPKYQTKKKSAHHQANGAVPLKEDSIESKEKEQEKQETLLE 657 (1384)
Q Consensus 580 ~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1384)
+|+.+|+++++++++++++++++| ..++.. ....++||+|.+++++..+.....+++.....-++ .+..+ .+
T Consensus 282 lLTakQK~~~a~aea~l~~ll~sg~~~~va~k-dg~~kKrpiY~nKKk~~rq~~~~~~s~~~~~~~~~-~e~~~----~~ 355 (1064)
T KOG1144|consen 282 LLTAKQKEEAALAEAFLKQLLASGGGLPVADK-DGDSKKRPIYANKKKKARQKGNDRTSVEKLGEVEA-KENHA----GD 355 (1064)
T ss_pred cchHhhHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCcccCcccccccccccccccchhhhhhcccCch-hhhcc----CC
Confidence 999999999999999999999997 333332 23377899999988865444332111110000000 00000 00
Q ss_pred cccccchhccccccccccCCcc-ccCCCCCccccCCCCCcchhhhcccccccccccCCCCCccccCCCCCchhhhhcccc
Q 000625 658 VDVGETEKVEEGESLTVEEKPE-IADAPKENEVEEEDDDDDEEWDAKSWDDVNLNVKGAFDDEEADSEPEPLVKKEIKSA 736 (1384)
Q Consensus 658 ~~~~e~~~~~~~~~~~~~e~~~-~~~~~~e~~~eeEded~~DdwE~~s~d~~~~~~~~~~~deeee~e~~~~~~~e~k~~ 736 (1384)
+.+.+.+.++..+.+...+... +.+.+++.. ...++|++.. +.....+.++.++ +...+..++.+..
T Consensus 356 ~~~~d~~~~~~~e~~~~~e~e~~~~dv~~e~g------~~e~~~~~k~----~~~~~~d~dd~ee--~~~e~~~~e~~e~ 423 (1064)
T KOG1144|consen 356 VGSVDTEEVDLEEDSNTDEKEGTPEDVDQEEG------EEEDDWDAKV----DLAIDGDDDDDEE--ELQEEVDKELKEA 423 (1064)
T ss_pred CCCCcchhhccccccCCcccccCCCChhhhhc------ccchhhhccc----cccccccccchhh--hhchhhhhccccc
Confidence 0111111111112222222211 111111111 1123366531 1111111111111 1111111110000
Q ss_pred CCCCCcccCCchhhccccCCCCCCCchhhhhhccccccccCCCccCCCCccccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000625 737 IPSPRDAAEKPAVAVKKAIPEQPLKSQDAVTRKKEPAAKSKEPEVDATPKQAEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 737 ~~~~~e~~~~~~~~~~~~~~~~~~e~ed~~~qkee~a~k~~~r~~sa~a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.....+.......+ .....+ ..++..++.+. .+...+.......++..++|+||||||||||+|||.||++|++
T Consensus 424 ~~~~e~s~~~~~~a---~~k~~~-~~~d~~t~~~~--~~~~~~~~~~~~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~ 497 (1064)
T KOG1144|consen 424 EEEEEDSEKPTEDA---AVKAIS-KVEDAATRTKR--AKIAKRATNESANESTENLRSPICCILGHVDTGKTKLLDKIRG 497 (1064)
T ss_pred ccchhhcccccccc---cccccc-ccchhhhhhhh--cchhccCchhhccccchhcCCceEEEeecccccchHHHHHhhc
Confidence 00000000000000 000000 11121111111 1223333444556778899999999999999999999999999
Q ss_pred CcccccccCceeEeeeeeEecccccccchhhcccccc--cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC
Q 000625 817 TNVQEGEAGGITQQIGATYFPAENIRERTRELKANAT--LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL 894 (1384)
Q Consensus 817 t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~--~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv 894 (1384)
+||+.|++|||||+||++|||..+|+.++..+..... ++.|+|++||||||++|+|+|+||+++||+||||||++||+
T Consensus 498 tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGl 577 (1064)
T KOG1144|consen 498 TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGL 577 (1064)
T ss_pred cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccC
Confidence 9999999999999999999999999999988877654 88999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccC
Q 000625 895 EPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKD 974 (1384)
Q Consensus 895 ~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d 974 (1384)
.|||+++|++|+.+++||||++|||||+|+|.++++++|..+|.+|..+++++|..|+..|+.+|.++|||..+||.|.+
T Consensus 578 epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~ 657 (1064)
T KOG1144|consen 578 EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKE 657 (1064)
T ss_pred CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccC
Q 000625 975 RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 975 ~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
++.+|++||+||++|+||++|+.+|++|+|.+|..+|.|.+.++|+||+|+.++|+|+||+++|.||+||.||.|||||+
T Consensus 658 ~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 658 MGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred ccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceEEeCCCccHHHHHHHHHHHHHHHHhh
Q 000625 1055 QGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPDDDLEDVKEEAMEDMKSVMSR 1134 (1384)
Q Consensus 1055 ~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e~~~~~~~~~~~~~~~~~~~~ 1134 (1384)
+|||+|+||+||+|+||+++||++.|+||++|++|+||+|++.||+++++|++|+||+++++++.++..+|++|.++|++
T Consensus 738 ~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~ 817 (1064)
T KOG1144|consen 738 QGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSR 817 (1064)
T ss_pred CCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHH
Q 000625 1135 IDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEE 1214 (1384)
Q Consensus 1135 i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~ 1214 (1384)
|++++.||||||+|||||||||+||++ ++|||.++||||||++|||.|++|+++.+.||+||||+|+|..+|+.+|.+
T Consensus 818 Id~sgeGv~vqastlgslealleflk~--~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~ 895 (1064)
T KOG1144|consen 818 IDKSGEGVYVQASTLGSLEALLEFLKT--VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADE 895 (1064)
T ss_pred hhccCCceEEEecccchHHHHHHHHhh--cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccccCCCCeEEEEEEeeceEecCCCEeecCCc
Q 000625 1215 LGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRD 1294 (1384)
Q Consensus 1215 ~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v~~~~ 1294 (1384)
+||+||+++|||||||.|+.|+..+++.++++..+.|||||+|+|||+||||+++|+|+||.|..|+|++||||||+..+
T Consensus 896 ~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~ 975 (1064)
T KOG1144|consen 896 MGVKIFCADIIYHLFDAFTKYIEEIKEEKKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPKRE 975 (1064)
T ss_pred hCceeeehhHHHHHHHHHHHHHHHHHHHHHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecchhhHHHHHHHhhccCCHHHHHHH
Q 000625 1295 FIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLL 1374 (1384)
Q Consensus 1295 ~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~~~~~~~l~~~~~~~~~~~~~~~~ 1374 (1384)
+|++|+|+||++||++|+.|++|++|||+|++.| ..+|+||||||++.|+|||+|||+|||+|+.|||++||.++|+||
T Consensus 976 ~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~~~-~e~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr~el~~~dw~Lv 1054 (1064)
T KOG1144|consen 976 FIDLGRVASIENNHKPVDYAKKGQEVAIKIEASN-GEEQKMFGRHFDMEDILYSHISRRSIDILKKAFRDELTKDDWQLV 1054 (1064)
T ss_pred eeeeeeeeeecccCcccchhhcCCeEEEEEecCC-CCCcchhhcccCccchHHHHhhHhhHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999876 567899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCC
Q 000625 1375 VKLKNLFKIQ 1384 (1384)
Q Consensus 1375 ~~lk~~~~i~ 1384 (1384)
++||++|+|+
T Consensus 1055 ~~Lk~~f~I~ 1064 (1064)
T KOG1144|consen 1055 VKLKKLFGII 1064 (1064)
T ss_pred HHHHHHhccC
Confidence 9999999995
No 2
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=5.4e-108 Score=1008.31 Aligned_cols=575 Identities=40% Similarity=0.705 Sum_probs=522.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhc--ccccccCCCCEEEEeCCCCc
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL--KANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i--~~~~~~~~~~i~~IDTPGHe 868 (1384)
.+|+|+|+||||+||||||||++|+++.+..++.+|+|+++|++++++......+... .....++.++|+|||||||+
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4799999999999999999999999999999999999999999999876543211111 11122344579999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.|..++.++++.+|++|||||+++|+++||.+++.+++..++|+|||+||+|+..+|....+.+|.+++..+...+...|
T Consensus 81 ~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 81 AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989998889999999999988898999
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEE
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1026 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk~ 1026 (1384)
...+..++.+|.++||..++|+...+|++.+++|||||+||+||++|+.+|..+++..|...|. +..+++|+|++++.
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~ 240 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKE 240 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEE
Confidence 8899999999999999999999888999999999999999999999999999888887765553 45789999999999
Q ss_pred EcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece-eeechhhhcccccceeeccccccccCC
Q 000625 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1384)
Q Consensus 1027 ~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~-~~~~~kev~aa~gv~i~~~gL~~~~aG 1105 (1384)
+.|+|++++++|++|+|++||+|++++++||++++||+|++|.|++++|..+ .|.++.++.+++|++|.+.||+.+.+|
T Consensus 241 ~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG 320 (590)
T TIGR00491 241 ETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAG 320 (590)
T ss_pred cCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999764 578899999999999999999999999
Q ss_pred CceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHH
Q 000625 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1384)
Q Consensus 1106 ~~l~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~ 1185 (1384)
+.|++++ ++++..+++.++.++..+ .+.....||||||||+||||||+++|.. ..|||++++||+||++||++|+
T Consensus 321 ~~~~~~~-~e~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAl~~~l~~--~~i~i~~~~vG~it~~Dv~~A~ 395 (590)
T TIGR00491 321 SPIRVVT-DEEIEKVKEEILKEVEEI--KIDTDEEGVVVKADTLGSLEALVNELRD--MGVPIKKADIGDVSKRDVVEAG 395 (590)
T ss_pred CEEEEcC-cHHHHHHHHHHHHHhhhc--ccccccccEEEEecCcchHHHHHHHHHh--CCCcEEEecCCCCcHhHHHHHh
Confidence 9997774 445666666666555443 3556778999999999999999999997 5699999999999999999999
Q ss_pred hhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccc
Q 000625 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1384)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf 1265 (1384)
++.++++.||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++..++....+++||.++|+|++||
T Consensus 396 ~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~~~~~~a~v~il~~~vf 475 (590)
T TIGR00491 396 IAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKKRKWMEAIIKPAKIRLIPKLVF 475 (590)
T ss_pred hcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchhhhhcceeEEEEEEEEeeheee
Confidence 99988999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred cCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCe
Q 000625 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1345 (1384)
Q Consensus 1266 ~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~ 1345 (1384)
++++|+||||+|++|+|++|++||.+++.++ |+|.||+|++++|++|++|+||||+|++| ||||||++||+
T Consensus 476 ~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD~ 546 (590)
T TIGR00491 476 RQSKPAIVGVEVLTGVIRQGYPLMKDDGETV--GTVRSMQDKGENVKSASAGQEVAIAIKDV-------VYGRTIHEGDT 546 (590)
T ss_pred eCCCCeEEEEEEecCEEecCCeEEecCCEEE--EEEchhcccCccccEECCCCEEEEEEeCc-------cccCCCCCCCE
Confidence 9999999999999999999999976666443 99999999999999999999999999986 89999999999
Q ss_pred EEEecchhhHHHHHHHhhccCCHHHHHHHHHHhh
Q 000625 1346 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKN 1379 (1384)
Q Consensus 1346 l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~ 1379 (1384)
|||+|||+|||+|+++||++||.++|+||.++-.
T Consensus 547 l~~~i~~~~~~~l~~~~~~~l~~~~~~~~~ei~~ 580 (590)
T TIGR00491 547 LYVDVPENHYHILKEQLSDDLTDEEKDAMDKIAE 580 (590)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999976543
No 3
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=9.5e-105 Score=983.93 Aligned_cols=577 Identities=45% Similarity=0.730 Sum_probs=526.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhc-c-cccccCCCCEEEEeCCCC
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTREL-K-ANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i-~-~~~~~~~~~i~~IDTPGH 867 (1384)
..+|+|+|+||||+||||||||++|+++++..++.++||+++|++++++.......... . ....+..++|+|||||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 46899999999999999999999999999999999999999999998875432111100 0 012234467999999999
Q ss_pred cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 868 ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++|..++.++++.||++|||||+++|+++||++++.++...++|+|||+||||+++.|....+..|..++..+...+...
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~ 161 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQE 161 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899888899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEE
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVK 1025 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk 1025 (1384)
|...+..+..+|..+||+.++|+...+|+..+++||+||+||+||.+|+..|..+++..|...+. ...+++|+|++++
T Consensus 162 f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~ 241 (586)
T PRK04004 162 LEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241 (586)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEE
Confidence 99999999999999999999998888899999999999999999999999998877777765554 3567999999999
Q ss_pred EEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccce-eceeeechhhhcccccceeeccccccccC
Q 000625 1026 VIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1384)
Q Consensus 1026 ~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~r-vk~~~~~~kev~aa~gv~i~~~gL~~~~a 1104 (1384)
.++|+|++++++|.+|+|++||.|++++.++++.++||+|++|.|++++| +.+.|.+++++.+++|++|.+.||+.+.+
T Consensus 242 ~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~ 321 (586)
T PRK04004 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALA 321 (586)
T ss_pred EeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCC
Confidence 99999999999999999999999999999889999999999999999999 77788999999999999999999999999
Q ss_pred CCceEEeCCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHH
Q 000625 1105 GTGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRA 1184 (1384)
Q Consensus 1105 G~~l~v~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A 1184 (1384)
|+.|+++.+ +++..+...++.++..+ .+.....||||||||+||||||+++|.. .+|||++++||+||++||++|
T Consensus 322 g~~~~v~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~vivkad~~Gs~EAi~~~l~~--~~i~i~~~~vG~it~~Dv~lA 396 (586)
T PRK04004 322 GSPLRVVRD-EDVEEVKEEVEEEIEEI--RIETDEEGVVVKADTLGSLEALVNELRE--EGIPIRKADVGDISKRDVIEA 396 (586)
T ss_pred CCeEEEeCc-HHHHHHHHHHHHHHHhc--cccccccCEEEEeCCccHHHHHHHHHHh--CCCCEEEeccCCCCHHHHHHH
Confidence 999999987 55666666666665554 2456678999999999999999999987 689999999999999999999
Q ss_pred HhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeeccccc
Q 000625 1185 SVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCV 1264 (1384)
Q Consensus 1185 ~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~v 1264 (1384)
++|++++|.||+||||||+++++|+++|++.||+|++|+|||||||+|++||.+++++...+....+++||.++|+|++|
T Consensus 397 ~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~~~~~~~~g~a~v~il~~~v 476 (586)
T PRK04004 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKEKILEKIVRPAKIRILPGYV 476 (586)
T ss_pred HhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhhhhhheeeceEEEEEcccee
Confidence 99999999999999999999999999999999999999999999999999999999988887788899999999999999
Q ss_pred ccCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCC
Q 000625 1265 FNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIED 1344 (1384)
Q Consensus 1265 f~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d 1344 (1384)
|+.++|+||||+|++|+|++|++||.++| +++|+|.||+|++++|++|++|+||||+|++| +|||||.+||
T Consensus 477 f~~~~~~IaGc~V~~G~i~~~~~v~r~~g--~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~-------~~g~~~~~gD 547 (586)
T PRK04004 477 FRQSDPAIVGVEVLGGTIKPGVPLIKEDG--KRVGTIKQIQDQGENVKEAKAGMEVAISIDGP-------TVGRQIKEGD 547 (586)
T ss_pred EecCCCeEEEEEEEeCEEecCCEEEEECC--EEEEEEehhhccCCcccEeCCCCEEEEEEecc-------cccCCCCCCC
Confidence 99989999999999999999999875577 46799999999999999999999999999987 6999999999
Q ss_pred eEEEecchhhHHHHHHHhhccCCHHHHHHHHHHhhh
Q 000625 1345 ELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNL 1380 (1384)
Q Consensus 1345 ~l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~ 1380 (1384)
+|||+++|++++.|++|||++|++++|+||.++-++
T Consensus 548 ~i~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 583 (586)
T PRK04004 548 ILYVDIPEEHAKILEQELKDELSDDEKEALKEILEI 583 (586)
T ss_pred EEEEEEEehhHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988665
No 4
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=5.2e-105 Score=1017.46 Aligned_cols=565 Identities=40% Similarity=0.673 Sum_probs=525.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhccc--ccccCCCCEEEEeCCCCcchhHHH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~--~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.+|++| |||||++||+++|+.+++||||||||++++|++.+..+|..+.. ...++.++|+|||||||..|..++
T Consensus 468 ~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr 543 (1049)
T PRK14845 468 NGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLR 543 (1049)
T ss_pred eeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHH
Confidence 577777 99999999999999999999999999999999876655544321 234567899999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
.++++.||++|||||+++|+++||.+++.++...++|+|||+||+|++++|...++.+|..++..|...+..++..++..
T Consensus 544 ~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 544 KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh--cccccceEEEEEEEEcCcce
Q 000625 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKVIEGHGT 1032 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--~~~~~~~~VlEvk~~~G~G~ 1032 (1384)
++.+|..+|++.+.||.+.+|++.+++|||||+||+||++|+.+|..+.+..|...+. ...+++|+|++++.++|+|+
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~ 703 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGT 703 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCcee
Confidence 9999999999999999999999999999999999999999999998887776655554 45678999999999999999
Q ss_pred EEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece-eeechhhhcccccceeeccccccccCCCceEEe
Q 000625 1033 TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG-TYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1033 vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~-~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~ 1111 (1384)
|++++|++|+|++||+|++|++++|++++||+|++|.|++++|..+ .|.+++++.+++|++|+++||+.+.||+.|+++
T Consensus 704 vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 704 TIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEe
Confidence 9999999999999999999999999999999999999999999665 789999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhccCCeeeeeEEeecCccccchHHHHHhhhhcc
Q 000625 1112 GPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRASVMLEKK 1191 (1384)
Q Consensus 1112 ~~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~ 1191 (1384)
.++++++.+.+.++.++..+ .+.....||||||||+||||||+++|+. ..|||++++||+||++||++|++|++++
T Consensus 784 ~~e~~~~~~~~~~~~~~~~~--~~~~~~~~vivKaDt~GSlEAl~~~L~~--~~i~i~~~~vG~it~~DV~~A~~~~~~~ 859 (1049)
T PRK14845 784 PTKEKIEKAKEEVMKEVEEA--KIETDKEGILIKADTLGSLEALANELRK--AGIPIKKAEVGDITKKDVIEALSYKQEN 859 (1049)
T ss_pred CCHHHHHHHHHHHHHHHhhh--ccCcceeeEEEEecccchHHHHHHHHHh--CCCCEEEeeCCCCCHHHHHHHHhhhccC
Confidence 99999988888887777655 3556788999999999999999999987 5799999999999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhccceecceeeeecccccccCCCCe
Q 000625 1192 KEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFNKKDPI 1271 (1384)
Q Consensus 1192 ~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~~~~~~ 1271 (1384)
|+||+||||||+++++|+.+|+++||+||+|+|||||||+|++||.+++++.+++....+++||+++|+|++||++++|+
T Consensus 860 ~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~~ 939 (1049)
T PRK14845 860 PLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPA 939 (1049)
T ss_pred CCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEeccceEEeCCCCe
Confidence 99999999999999999999999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecc
Q 000625 1272 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1272 IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
||||+|++|+|++|++||..++.+ +|+|.||+|++++|++|++|+||||+|+++ +|||||++||+|||+||
T Consensus 940 IaG~~V~~G~i~~~~~l~r~~~~~--iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~-------~~gr~~~~gD~l~~~i~ 1010 (1049)
T PRK14845 940 IVGVEVLEGTLRVGVTLIKEDGMK--VGTVRSIKDRGENVKEAKAGKAVAIAIEGA-------ILGRHVDEGETLYVDVP 1010 (1049)
T ss_pred EEEEEEeeCEEecCcEEEecCCEE--EEEEchHhccCccccEeCCCCEEEEEEecc-------cccCCCCCCCEEEEecC
Confidence 999999999999999998656644 499999999999999999999999999986 88999999999999999
Q ss_pred hhhHHHHHHHhhccCCHHHHHHHHHHh
Q 000625 1352 RKSIDVLKANYRDDLSMDEWRLLVKLK 1378 (1384)
Q Consensus 1352 ~~~~~~l~~~~~~~~~~~~~~~~~~lk 1378 (1384)
|.||+.|+.+||++||.++|++|.++-
T Consensus 1011 ~~~~~~l~~~~~~~l~~~~~~~~~~~~ 1037 (1049)
T PRK14845 1011 ESHVRELYHKYMDRLRDDEKEALKMYM 1037 (1049)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 999999999999999999999988543
No 5
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-99 Score=884.79 Aligned_cols=500 Identities=37% Similarity=0.489 Sum_probs=439.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.+|+|+|||||||||||||||++||++++..+++||||||||+|+++++.. ..+.|+|||||||+.|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-------------CCceEEEEcCCcHHHH
Confidence 479999999999999999999999999999999999999999999998632 2357999999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
++||.||+..||++||||++++|++|||++.|++++.+++||||++||||++. ++
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~-------~n------------------ 123 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPE-------AN------------------ 123 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCC-------CC------------------
Confidence 99999999999999999999999999999999999999999999999999972 22
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
...+..+|.++||+++.| ++.+.|||+||+||+||++||..|+.+.+. +..+..+..++.|+|+|++..+|+
T Consensus 124 -p~~v~~el~~~gl~~E~~------gg~v~~VpvSA~tg~Gi~eLL~~ill~aev-~elka~~~~~a~gtviE~~~dkG~ 195 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEW------GGDVIFVPVSAKTGEGIDELLELILLLAEV-LELKANPEGPARGTVIEVKLDKGL 195 (509)
T ss_pred -HHHHHHHHHHcCCCHhhc------CCceEEEEeeccCCCCHHHHHHHHHHHHHH-HhhhcCCCCcceEEEEEEEeccCC
Confidence 234666788899998865 677999999999999999999999866654 344556678899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceEE
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v 1110 (1384)
|++++++|++|+|+.||.|++++.+|++.+.++.++.|-+...++....+..++++++|.+..++++++..+.++..+++
T Consensus 196 G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~ 275 (509)
T COG0532 196 GPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRV 275 (509)
T ss_pred CceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCCCeEEeccccccccCceEEecCChHHHhhhhhHhh
Confidence 99999999999999999999999999999999999999888888877788888999999999999999999999998887
Q ss_pred eC--CCccHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEeecCccccchHHHHH
Q 000625 1111 VG--PDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRAS 1185 (1384)
Q Consensus 1111 ~~--~e~~~~~~~~~~~~~~~~~~~~i~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~vG~vt~~DV~~A~ 1185 (1384)
+. ...........+...+..+..+.+....||||||||+||||||..+|+ .+++++.|++++||+||++||++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~ 355 (509)
T COG0532 276 VLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAA 355 (509)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHH
Confidence 65 333222333333333333322334456899999999999999998874 5778899999999999999999999
Q ss_pred hhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHhc-cceecceeeeeccccc
Q 000625 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAA-DEAVFPCVLKILPNCV 1264 (1384)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~-~~av~p~~~~i~~~~v 1264 (1384)
++ +|+||||||++++.|+++|+..||+||+|+|||||||+|+.||.+++++..++.. +.+ +|+.+.++|
T Consensus 356 as------~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~g~l~p~~~e~~~g~~-~~r~v~~~~--- 425 (509)
T COG0532 356 AS------DAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLA-EVRAVFKLP--- 425 (509)
T ss_pred hc------CCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHHhccchhhhhhcccce-EEEEEEEcC---
Confidence 84 6999999999999999999999999999999999999999999999999887765 554 555444333
Q ss_pred ccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCC
Q 000625 1265 FNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIE 1343 (1384)
Q Consensus 1265 f~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~ 1343 (1384)
+.|.|+||+|++|+|++|+++|+ |++.+||.|+|.||+|++++|++|++|+||||+|+|| |||.+|
T Consensus 426 ---k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~~----------~di~~g 492 (509)
T COG0532 426 ---KVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIENY----------RDIKEG 492 (509)
T ss_pred ---CCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecCc----------ccCCCC
Confidence 47999999999999999999997 6999999999999999999999999999999999986 599999
Q ss_pred CeEEEecchhhHHHHH
Q 000625 1344 DELVSHISRKSIDVLK 1359 (1384)
Q Consensus 1344 d~l~s~i~~~~~~~l~ 1359 (1384)
|+|||++++++.+.|+
T Consensus 493 D~le~~~~~~~~r~l~ 508 (509)
T COG0532 493 DILEVFEPVEVKRTLK 508 (509)
T ss_pred CEEEEEEEEeechhhc
Confidence 9999999999887764
No 6
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-87 Score=776.26 Aligned_cols=483 Identities=30% Similarity=0.469 Sum_probs=410.3
Q ss_pred CccccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeC
Q 000625 785 PKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1384)
Q Consensus 785 a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDT 864 (1384)
..++....|+|+|+|||||||||||||++||++.|..+++||||||||++.++.... ..|+|+||
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G---------------~~iTFLDT 208 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG---------------KSITFLDT 208 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC---------------CEEEEecC
Confidence 344555679999999999999999999999999999999999999999999877532 35999999
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|||..|..||.||+..+||+||||.+++|++|||.++|.+++..++|+||+|||||.+ ++++
T Consensus 209 PGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp-------~a~p----------- 270 (683)
T KOG1145|consen 209 PGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP-------GANP----------- 270 (683)
T ss_pred CcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC-------CCCH-----------
Confidence 9999999999999999999999999999999999999999999999999999999985 4443
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEE
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEV 1024 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEv 1024 (1384)
..+..+|..+|+..+ ++|+++++||+||+||+||+.|.+.++.+ ...|..+..+..+++++|+|+
T Consensus 271 --------ekv~~eL~~~gi~~E------~~GGdVQvipiSAl~g~nl~~L~eaill~-Ae~mdLkA~p~g~~eg~VIES 335 (683)
T KOG1145|consen 271 --------EKVKRELLSQGIVVE------DLGGDVQVIPISALTGENLDLLEEAILLL-AEVMDLKADPKGPAEGWVIES 335 (683)
T ss_pred --------HHHHHHHHHcCccHH------HcCCceeEEEeecccCCChHHHHHHHHHH-HHHhhcccCCCCCceEEEEEe
Confidence 456677888998766 56999999999999999999999988643 456777888899999999999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeecccccc-c
Q 000625 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-A 1102 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~-~ 1102 (1384)
...+|+|.+++++|.+|||+.|+.+ ||| ..+++||+|++.+. +.|. +.++..+.+.||.. +
T Consensus 336 ~vdkg~G~~aT~iVkrGTLkKG~vl-V~G---~~w~KVr~l~D~nG-------------k~i~~A~Ps~pv~V~GwkdlP 398 (683)
T KOG1145|consen 336 SVDKGRGPVATVIVKRGTLKKGSVL-VAG---KSWCKVRALFDHNG-------------KPIDEATPSQPVEVLGWKDLP 398 (683)
T ss_pred eecCCccceeEEEEeccccccccEE-EEe---chhhhhhhhhhcCC-------------CCccccCCCCceEeecccCCC
Confidence 9999999999999999999999965 465 45899999987652 2222 33566666778887 7
Q ss_pred cCCCceEEeCCCccHHHHHHHHHH------------HH----H---HHH--------h-----hhhccC----CceEEEe
Q 000625 1103 IAGTGLYVVGPDDDLEDVKEEAME------------DM----K---SVM--------S-----RIDKSG----EGVCVQA 1146 (1384)
Q Consensus 1103 ~aG~~l~v~~~e~~~~~~~~~~~~------------~~----~---~~~--------~-----~i~~~~----~gvivka 1146 (1384)
.+|+-++.|.+++.++.+-..... ++ . +.+ . +++... .+||||+
T Consensus 399 ~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK~ 478 (683)
T KOG1145|consen 399 IAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIKC 478 (683)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEEe
Confidence 999999999999877654221110 00 0 000 0 122222 4699999
Q ss_pred CCcCcHHHHHHHh---ccCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcc
Q 000625 1147 STLGSLEALLEFL---KSDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIAD 1223 (1384)
Q Consensus 1147 dt~GSlEAl~~~L---~~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~ 1223 (1384)
|++||+|||++.| .+++|++.|++++||+||++||.+|.+ +.|||+||||+.++....+|...||+|+.||
T Consensus 479 DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~------~daiI~~FnV~~~~~~~~~a~~~gVkI~~~n 552 (683)
T KOG1145|consen 479 DVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQA------SDAIIYGFNVKASPSVKQLAAAKGVKIRLYN 552 (683)
T ss_pred cccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHh------cCcEEEEEecCCChHHHHHHhccCceEeehh
Confidence 9999999999876 567899999999999999999999997 6899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHH-hccceecceeeeeccccccc--CCCCeEEEEEEeeceEecCCCEee-cCCceeeee
Q 000625 1224 IIYHLFDQFTAYINNLKEEKKRE-AADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIG 1299 (1384)
Q Consensus 1224 IIY~L~d~~~~~~~~~~~~~~~~-~~~~av~p~~~~i~~~~vf~--~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G 1299 (1384)
|||||||++++.|...+++..++ .+|+|. ++.+|. |+ ++.-.||||+|.+|.|.+.+.+++ |+|++||.|
T Consensus 553 VIY~LieDv~~~ls~rlp~v~e~~vvGea~---Vl~~F~---i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G 626 (683)
T KOG1145|consen 553 VIYRLIEDVRELLSERLPPVEEQEVVGEAE---VLATFD---IREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEG 626 (683)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEeecccee---eeeeEe---eccccccccccceEeecceEeecceEEEEeCCcEEEEe
Confidence 99999999999999988876544 569985 445443 33 233359999999999999999996 899999999
Q ss_pred EEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEEecchh
Q 000625 1300 RIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVSHISRK 1353 (1384)
Q Consensus 1300 ~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s~i~~~ 1353 (1384)
.|.||+|++++|.+|++|.||||.|.++| -.|.+||+|.||-+|.
T Consensus 627 ~l~SlKh~KedV~~vkkg~ECGl~~~d~~---------~~f~~GD~i~~ye~k~ 671 (683)
T KOG1145|consen 627 ELDSLKHLKEDVTEVKKGHECGLTFDDGN---------EDFKEGDKIQCYEKKR 671 (683)
T ss_pred chhHHhhhhhhhhhhcCCCeeeeEeccCC---------cCCCcCCEEEEeehhh
Confidence 99999999999999999999999999987 2699999999998554
No 7
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.9e-81 Score=773.18 Aligned_cols=474 Identities=32% Similarity=0.455 Sum_probs=392.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...|+|+|+||||+|||||||+++|+++++..++.+|||+++|++.+.+... ..|+|||||||++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~---------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG---------------KMITFLDTPGHEA 147 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC---------------cEEEEEECCCCcc
Confidence 4569999999999999999999999999999999999999999987766421 1599999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..+|.++++.+|++|||||+++|+++||.++|+++...++|+|||+||||+.. +++
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~-------~~~---------------- 204 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPE-------ANP---------------- 204 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECccccc-------CCH----------------
Confidence 999999999999999999999999999999999999999999999999999852 111
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1384)
..+..+|...|+... .|+..+++||+||++|+||.+|+.+|... ...+.....+..+++|+|++++.++|
T Consensus 205 ---e~v~~~L~~~g~~~~------~~~~~~~~v~iSAktGeGI~eLl~~I~~~-~~~~~l~~~~~~~~~~~V~ev~~~~g 274 (587)
T TIGR00487 205 ---DRVKQELSEYGLVPE------DWGGDTIFVPVSALTGDGIDELLDMILLQ-SEVEELKANPNGQASGVVIEAQLDKG 274 (587)
T ss_pred ---HHHHHHHHHhhhhHH------hcCCCceEEEEECCCCCChHHHHHhhhhh-hhhccccCCCCCCceeEEEEEEEeCC
Confidence 112233444444332 23566799999999999999999998642 22222223456789999999999999
Q ss_pred cceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccc-ccCCCce
Q 000625 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGL 1108 (1384)
Q Consensus 1030 ~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~-~~aG~~l 1108 (1384)
+|++++++|++|+|++||.|++++ .+++||+|++++.. ..+.+. +|..+.+.||.. +.+|+.|
T Consensus 275 ~G~v~~~~V~~GtL~~Gd~iv~~~----~~~kVr~l~~~~g~----------~v~~a~--~g~~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 275 RGPVATVLVQSGTLRVGDIVVVGA----AYGRVRAMIDENGK----------SVKEAG--PSKPVEILGLSDVPAAGDEF 338 (587)
T ss_pred CcEEEEEEEEeCEEeCCCEEEECC----CccEEEEEECCCCC----------CCCEEC--CCCEEEEeCCCCCCCCCCEE
Confidence 999999999999999999998753 46789999875521 112223 455566669987 5999999
Q ss_pred EEeCCCccHHHHHHHHHHH-------------HHHHHhhhh---ccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeE
Q 000625 1109 YVVGPDDDLEDVKEEAMED-------------MKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVS 1169 (1384)
Q Consensus 1109 ~v~~~e~~~~~~~~~~~~~-------------~~~~~~~i~---~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~ 1169 (1384)
+++.++.+++.+.+...+. +.+++..+. ....+|||||||+||||||.++|. +++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 9999998877654332221 222222222 244689999999999999998864 567899999
Q ss_pred EeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHH-hc
Q 000625 1170 GISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AA 1248 (1384)
Q Consensus 1170 ~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~-~~ 1248 (1384)
+++||+||++||++|+++ +|+||||||++++.++++|++.||+|++|+|||||||+|++||.+++++...+ ..
T Consensus 419 ~~~vG~i~~~Dv~~a~~~------~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~ 492 (587)
T TIGR00487 419 HSGVGGITETDISLASAS------NAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEII 492 (587)
T ss_pred EeecCCCchhhHHHHHhc------CCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEee
Confidence 999999999999999984 89999999999999999999999999999999999999999999999887544 34
Q ss_pred cceecceeeeecccccccC-CCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEec
Q 000625 1249 DEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG 1326 (1384)
Q Consensus 1249 ~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~ 1326 (1384)
|.|. |+. ||+. +.|+||||+|++|+|++|+++|| |+|.+||.|+|.||+|++++|++|++|+||||+|++
T Consensus 493 g~a~------v~~--vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~ 564 (587)
T TIGR00487 493 GQAE------VRQ--VFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKN 564 (587)
T ss_pred eeEE------EEE--EEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEec
Confidence 6663 333 7774 56999999999999999999997 789999999999999999999999999999999999
Q ss_pred CCchhhhccccccccCCCeEEEecc
Q 000625 1327 SNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1327 ~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
|| +|.+||+|+||-.
T Consensus 565 ~~----------~~~~gD~i~~~~~ 579 (587)
T TIGR00487 565 YN----------DIKEGDIIEAFEV 579 (587)
T ss_pred cc----------cCCCCCEEEEEEE
Confidence 85 8999999999853
No 8
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=5.1e-80 Score=776.20 Aligned_cols=472 Identities=33% Similarity=0.470 Sum_probs=396.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...|+|+|+||||+||||||||++|+++++..++.+|||+++|++.+.+.. ..|+|||||||.+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG----------------GKITFLDTPGHEA 349 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC----------------EEEEEEECCCCcc
Confidence 367999999999999999999999999999999999999999998877642 2499999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..++.++++.+|++|||||+++|+++||+++|.++...++|+|||+||||+.. .++.
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~-------a~~e--------------- 407 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPG-------ANPD--------------- 407 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccc-------cCHH---------------
Confidence 999999999999999999999999999999999999999999999999999952 1211
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcC
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEG 1029 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G 1029 (1384)
.+...|..+++..+ .|++.++||||||++|.||.+|+.+|.... ..+.....+..++.+.|++++.++|
T Consensus 408 ----~V~~eL~~~~~~~e------~~g~~vp~vpvSAktG~GI~eLle~I~~~~-e~~~l~~~~~~~~~g~V~es~~dkg 476 (787)
T PRK05306 408 ----RVKQELSEYGLVPE------EWGGDTIFVPVSAKTGEGIDELLEAILLQA-EVLELKANPDRPARGTVIEAKLDKG 476 (787)
T ss_pred ----HHHHHHHHhcccHH------HhCCCceEEEEeCCCCCCchHHHHhhhhhh-hhhhcccCCCCCcEEEEEEEEEcCC
Confidence 12222333333322 246678999999999999999999987643 2222234456678999999999999
Q ss_pred cceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccc-cCCCc
Q 000625 1030 HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHA-IAGTG 1107 (1384)
Q Consensus 1030 ~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~-~aG~~ 1107 (1384)
+|++++++|++|+|+.||.|+++ +.+++||.|++... ..+. +.+|..+.+.||..+ .+|+.
T Consensus 477 ~G~v~~v~V~sGtLk~Gd~vv~g----~~~gkVr~m~~~~~-------------~~v~~A~pGd~V~I~gl~~~p~~Gd~ 539 (787)
T PRK05306 477 RGPVATVLVQNGTLKVGDIVVAG----TTYGRVRAMVDDNG-------------KRVKEAGPSTPVEILGLSGVPQAGDE 539 (787)
T ss_pred CeEEEEEEEecCeEecCCEEEEC----CcEEEEEEEECCCC-------------CCCCEEcCCCeEEEeCCCCCCCCCCE
Confidence 99999999999999999998763 56889999986532 1222 346777778899886 99999
Q ss_pred eEEeCCCccHHHHHHHHHH-------------HHHHHHhhhhcc---CCceEEEeCCcCcHHHHHHHh---ccCCeeeee
Q 000625 1108 LYVVGPDDDLEDVKEEAME-------------DMKSVMSRIDKS---GEGVCVQASTLGSLEALLEFL---KSDAVKIPV 1168 (1384)
Q Consensus 1108 l~v~~~e~~~~~~~~~~~~-------------~~~~~~~~i~~~---~~gvivkadt~GSlEAl~~~L---~~~~v~i~i 1168 (1384)
|+++.++..+..+...... .|..++..+... ..+|||||||+||||||..+| .++++.|+|
T Consensus 540 l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i 619 (787)
T PRK05306 540 FVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI 619 (787)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE
Confidence 9999998877666432211 133333334222 358999999999999998875 567899999
Q ss_pred EEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHh-
Q 000625 1169 SGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA- 1247 (1384)
Q Consensus 1169 ~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~- 1247 (1384)
++++||+||++||++|++ ++|+||||||++++.++.+|++.||.|++|+|||||||+|+.||.+++.+...+.
T Consensus 620 ~~~~vG~it~~Dv~la~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~ 693 (787)
T PRK05306 620 IHSGVGAITESDVTLAAA------SNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEI 693 (787)
T ss_pred EeeccCCCCHHHHHHHHh------cCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheee
Confidence 999999999999999997 5899999999999999999999999999999999999999999999998876554
Q ss_pred ccceecceeeeecccccccC-CCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEe
Q 000625 1248 ADEAVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIA 1325 (1384)
Q Consensus 1248 ~~~av~p~~~~i~~~~vf~~-~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~ 1325 (1384)
+|.|. |+ .||+. +.|.||||+|++|+|++|+++|| |+|.+||.|+|.||+|++++|.+|++|+||||.|+
T Consensus 694 ~g~a~------v~--~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~ 765 (787)
T PRK05306 694 IGQAE------VR--EVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLE 765 (787)
T ss_pred eeeEE------EE--EEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEee
Confidence 57774 33 36764 55999999999999999999997 79999999999999999999999999999999999
Q ss_pred cCCchhhhccccccccCCCeEEEecc
Q 000625 1326 GSNSEEQQKMFGRHFDIEDELVSHIS 1351 (1384)
Q Consensus 1326 ~~~~~~~~~~~gr~f~~~d~l~s~i~ 1351 (1384)
+|| +|.+||+|+||..
T Consensus 766 ~~~----------d~~~gD~ie~~~~ 781 (787)
T PRK05306 766 NYN----------DIKEGDIIEAYEM 781 (787)
T ss_pred ccc----------cCCCCCEEEEEEE
Confidence 996 7999999999864
No 9
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=3.4e-78 Score=753.26 Aligned_cols=474 Identities=30% Similarity=0.438 Sum_probs=390.4
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
..|+|+|+||||+|||||||+++|+++.+..++.+|||++++++.+.+.... ....|+|||||||..|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~------------~~~kItfiDTPGhe~F 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKD------------ENQKIVFLDTPGHEAF 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecC------------CceEEEEEECCcHHHH
Confidence 3588999999999999999999999999988899999999998876553100 1135999999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+++..||++|||||+++|+++||+++|.++...++|+|||+||||++. .++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~-------~~~----------------- 364 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN-------ANT----------------- 364 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccc-------cCH-----------------
Confidence 99999999999999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
..+...|..+++... .|++.++||++||++|.||.+|+.+|+.+.. .+.....+..++.++|++++..+++
T Consensus 365 --e~v~~eL~~~~ll~e------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e-~~~lk~~~~~~~~g~V~e~~iD~~~ 435 (742)
T CHL00189 365 --ERIKQQLAKYNLIPE------KWGGDTPMIPISASQGTNIDKLLETILLLAE-IEDLKADPTQLAQGIILEAHLDKTK 435 (742)
T ss_pred --HHHHHHHHHhccchH------hhCCCceEEEEECCCCCCHHHHHHhhhhhhh-hhcccCCCCCCceEEEEEEEEcCCC
Confidence 112222333332221 2356789999999999999999999876542 2222234456788999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeecccccc-ccCCCce
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGL 1108 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~-~~aG~~l 1108 (1384)
|++++++|++|+|+.||.|+++ +.+++||.|+++.. ..+. +.+|..+.+.||.. +.+|+.|
T Consensus 436 G~V~~~~V~sGtLr~GD~vv~g----~~~gkVr~m~~~~~-------------~~v~~a~pgdiV~I~gl~~~~~~Gd~l 498 (742)
T CHL00189 436 GPVATILVQNGTLHIGDIIVIG----TSYAKIRGMINSLG-------------NKINLATPSSVVEIWGLSSVPATGEHF 498 (742)
T ss_pred ceEEEEEEEcCEEecCCEEEEC----CcceEEEEEEcCCC-------------cCccEEcCCCceEecCcccCCCCCCEE
Confidence 9999999999999999998764 35678999885542 1222 34677777889954 6789999
Q ss_pred EEeCCCccHHHHHHHHHHHH----------HHH---HhhhhccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEee
Q 000625 1109 YVVGPDDDLEDVKEEAMEDM----------KSV---MSRIDKSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGIS 1172 (1384)
Q Consensus 1109 ~v~~~e~~~~~~~~~~~~~~----------~~~---~~~i~~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~ 1172 (1384)
+++.++..+..+........ ..+ +........+|||||||+||||||+++|. +++|.|+|++++
T Consensus 499 ~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~ 578 (742)
T CHL00189 499 QVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLNILYAS 578 (742)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEEEEEee
Confidence 99999887766643222111 111 11123345689999999999999998874 567999999999
Q ss_pred cCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHHHhCCeEEEcchHHHHHHHHHHHHhhhhHHHHHHh-ccce
Q 000625 1173 IGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEA 1251 (1384)
Q Consensus 1173 vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~-~~~a 1251 (1384)
||+||++||++|++ ++|+||||||++++.++.+|++.||+|++|+|||||||+|++||.+++.+...+. +|.|
T Consensus 579 vG~it~~Dv~lA~~------~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~a 652 (742)
T CHL00189 579 LGEVTETDVEFAST------TNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEA 652 (742)
T ss_pred cCCCCHHHHHHHHh------cCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeeceeE
Confidence 99999999999998 5899999999999999999999999999999999999999999999998876543 4666
Q ss_pred ecceeeeecccccccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCch
Q 000625 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSE 1330 (1384)
Q Consensus 1252 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~ 1330 (1384)
. |. .||+.++|.||||+|++|+|++|+++|| |++.+||.|+|.||+|++++|.+|++|+||||.|.+||
T Consensus 653 ~------v~--~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~-- 722 (742)
T CHL00189 653 E------VK--TVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQ-- 722 (742)
T ss_pred E------ee--EEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCC--
Confidence 3 33 3777666999999999999999999997 88999999999999999999999999999999999997
Q ss_pred hhhccccccccCCCeEEEec
Q 000625 1331 EQQKMFGRHFDIEDELVSHI 1350 (1384)
Q Consensus 1331 ~~~~~~gr~f~~~d~l~s~i 1350 (1384)
+|.+||+|.||-
T Consensus 723 --------d~~~gD~ie~y~ 734 (742)
T CHL00189 723 --------LWQSGDKIHAFE 734 (742)
T ss_pred --------CCCcCCEEEEEE
Confidence 699999999985
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-32 Score=314.70 Aligned_cols=261 Identities=26% Similarity=0.398 Sum_probs=197.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeEeeeeeEeccccc
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~~~i 841 (1384)
...+++|+||||||||||+.+|++.. +. ..+.+|+|.+++...|.++
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-- 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-- 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--
Confidence 34569999999999999999998532 11 1123455555555444443
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceE
Q 000625 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 913 (1384)
.+.|+|||||||.+|...|..|++++|++|||||+..| +.+||++|+-+++.+|+ .+|
T Consensus 84 --------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 84 --------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred --------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 24599999999999999999999999999999999998 89999999999999997 688
Q ss_pred EEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000625 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 914 VaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
|++||||++. |++ ++|......+..++...||+. .+++||||||++|+||-
T Consensus 150 VavNKMD~v~-wde------------------~rf~ei~~~v~~l~k~~G~~~----------~~v~FIPiSg~~G~Nl~ 200 (428)
T COG5256 150 VAVNKMDLVS-WDE------------------ERFEEIVSEVSKLLKMVGYNP----------KDVPFIPISGFKGDNLT 200 (428)
T ss_pred EEEEcccccc-cCH------------------HHHHHHHHHHHHHHHHcCCCc----------cCCeEEecccccCCccc
Confidence 9999999984 764 344555556666666777763 35899999999999997
Q ss_pred hHHHHHHHHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000625 994 DLLLLLVQWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 994 eLl~~L~~~~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
..-...-||-.++|++.|+. +.||+++|.+++.+.|.|++..++|.+|+|++||.|++.+.+ .
T Consensus 201 ~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~--~------- 271 (428)
T COG5256 201 KKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAG--V------- 271 (428)
T ss_pred ccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCc--c-------
Confidence 66544444445666666643 356999999999999999999999999999999999987644 2
Q ss_pred cCCCCCccceeceeeechhhhcccc-c--ceeeccccccccCCCceEEeCCC
Q 000625 1066 LTPHPMKELRVKGTYLHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1066 l~p~p~~e~rvk~~~~~~kev~aa~-g--v~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
...|+++++||.++..+. | +.+.++|+..-....+.++..++
T Consensus 272 -------~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~ 316 (428)
T COG5256 272 -------VGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSD 316 (428)
T ss_pred -------eEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCC
Confidence 234667788888877664 3 66677777653333444444333
No 11
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8e-32 Score=314.09 Aligned_cols=224 Identities=27% Similarity=0.344 Sum_probs=179.2
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeeeeEecccccccchhhccccccc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~ 854 (1384)
+++|| ++|+.|+|||||||.|+|+... .+..+.+|||....++.+-|...
T Consensus 58 ~~iRN--fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~------------- 122 (650)
T KOG0462|consen 58 ENIRN--FSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG------------- 122 (650)
T ss_pred hhccc--eEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC-------------
Confidence 78999 9999999999999999998421 12224466666554443333210
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
+.+-|++||||||.+|+..++|.+..||+|||||||++|+++||.-.+.++..+|+.+|.||||||++ .++..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp-------~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP-------SADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC-------CCCHH
Confidence 11459999999999999999999999999999999999999999999999999999999999999996 44432
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKE-QGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~-~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~ 1013 (1384)
.. ..++.+ .++. .-+++.+||++|.|+..+|..|++.++++.. ..
T Consensus 196 ~V-------------------~~q~~~lF~~~------------~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~---~~ 241 (650)
T KOG0462|consen 196 RV-------------------ENQLFELFDIP------------PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG---IR 241 (650)
T ss_pred HH-------------------HHHHHHHhcCC------------ccceEEEEeccCccHHHHHHHHHhhCCCCCC---CC
Confidence 22 222211 1222 2389999999999999999999988876533 35
Q ss_pred ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCC
Q 000625 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPH 1069 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~ 1069 (1384)
..||++.|++++++..+|.++.+.|.+|.|+.||.|..+.+......+...++.|.
T Consensus 242 d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~ 297 (650)
T KOG0462|consen 242 DAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPE 297 (650)
T ss_pred CcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccC
Confidence 67899999999999999999999999999999999999888766666777777665
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=5.4e-31 Score=318.92 Aligned_cols=260 Identities=23% Similarity=0.319 Sum_probs=187.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCceeEeeeeeEecccccc
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQ-----------------------------EGEAGGITQQIGATYFPAENIR 842 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~--v~-----------------------------~ge~gGITq~iga~~~~~~~i~ 842 (1384)
..+|+|+||+|||||||+++|++.. +. ....+|+|.+++...+.+
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~---- 82 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET---- 82 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc----
Confidence 3469999999999999999998521 11 112355666655444433
Q ss_pred cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-------CHHHHHHHHHHHhcCCc-eEE
Q 000625 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIV 914 (1384)
Q Consensus 843 ~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IV 914 (1384)
....|+|||||||.+|...+.++++.+|+||||||+..|+ .+||.+||.++..+++| +||
T Consensus 83 ------------~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 83 ------------PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred ------------CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 3346999999999999999999999999999999999997 48999999999999998 578
Q ss_pred EEeecccc-cCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000625 915 ALNKVDRL-YGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 915 aINKiDl~-~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
||||||+. ..|. ...|......+...|...|++. ..++|||+||++|+||.
T Consensus 151 ~vNKmD~~~~~~~------------------~~~~~~i~~~i~~~l~~~g~~~----------~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 151 CINKMDDKTVNYS------------------QERYDEIKKEVSAYLKKVGYNP----------EKVPFIPISGWQGDNMI 202 (446)
T ss_pred EEEccccccchhh------------------HHHHHHHHHHHHHHHHhcCCCc----------ccceEEEeecccCCCcc
Confidence 99999963 1232 2234445556666677667642 24799999999999997
Q ss_pred hHHHHHHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000625 994 DLLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 994 eLl~~L~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
+.-..+.||..+.+.+.|. ...|+++.|.+++.+.|.|++++|+|.+|+|++||.|++++++ ...+|+
T Consensus 203 ~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~--~~~~Vk-- 278 (446)
T PTZ00141 203 EKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG--VTTEVK-- 278 (446)
T ss_pred cCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCC--cEEEEE--
Confidence 5433333332333333322 2457999999999999999999999999999999999987653 334444
Q ss_pred cCCCCCccceeceeeechhhhc---ccccceeeccccccccCCCceEEeCC
Q 000625 1066 LTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1066 l~p~p~~e~rvk~~~~~~kev~---aa~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
++++|+..+. ++..+.+.+.+++......+++++.+
T Consensus 279 ------------sI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 279 ------------SVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred ------------EEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 4445554444 33446677777765555566666654
No 13
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=1.4e-30 Score=315.10 Aligned_cols=259 Identities=23% Similarity=0.297 Sum_probs=186.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc--c-----------------------------ccccCceeEeeeeeEeccccccc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV--Q-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v--~-----------------------------~ge~gGITq~iga~~~~~~~i~~ 843 (1384)
.+|+|+||+|||||||+++|++..- . ....+|||.+++..+|.+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~----- 82 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET----- 82 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-----
Confidence 4599999999999999999985221 0 111244555544443333
Q ss_pred chhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-------CHHHHHHHHHHHhcCCc-eEEE
Q 000625 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-------EPQTIESLNLLKMRNTE-FIVA 915 (1384)
Q Consensus 844 ~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-------~~QT~E~l~llk~~~vP-~IVa 915 (1384)
..+.|+|||||||.+|..++..|++.+|++|||||+..|. .+||++||.++..+++| +|||
T Consensus 83 -----------~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~ 151 (447)
T PLN00043 83 -----------TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICC 151 (447)
T ss_pred -----------CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEE
Confidence 3356999999999999999999999999999999999983 28999999999999996 6889
Q ss_pred Eeeccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhh
Q 000625 916 LNKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 916 INKiDl~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1384)
+||||++. .| ...+|...+..+...|...||.. ..++|||+||++|+||.+
T Consensus 152 vNKmD~~~~~~------------------~~~~~~~i~~ei~~~l~~~g~~~----------~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 152 CNKMDATTPKY------------------SKARYDEIVKEVSSYLKKVGYNP----------DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEcccCCchhh------------------hHHHHHHHHHHHHHHHHHcCCCc----------ccceEEEEeccccccccc
Confidence 99999851 12 12345555566777777777652 247999999999999965
Q ss_pred HHHHHHHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeecc
Q 000625 995 LLLLLVQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1384)
Q Consensus 995 Ll~~L~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll 1066 (1384)
....+.|+-.+.+++.|. ...||++.|.++|.+.|.|+++.|+|.+|+|++||.|++++++ ....
T Consensus 204 ~~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~--~~~~----- 276 (447)
T PLN00043 204 RSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG--LTTE----- 276 (447)
T ss_pred cccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC--CEEE-----
Confidence 433333322233333332 2457999999999999999999999999999999999987643 2333
Q ss_pred CCCCCccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000625 1067 TPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1067 ~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
|+++++++..+..| ..+.|.+.+++......+++++..
T Consensus 277 ---------VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 277 ---------VKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred ---------EEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 44555555554433 346777777765555566666654
No 14
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=1.9e-30 Score=323.97 Aligned_cols=251 Identities=29% Similarity=0.434 Sum_probs=189.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.||+++||+|||||||+++|++.+ +.....+|||++++..++.... ...|+|||||||+.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~---------------g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD---------------GRVLGFIDVPGHEKFL 65 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC---------------CcEEEEEECCCHHHHH
Confidence 479999999999999999999743 3344557999999876654321 1248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..|+..+|++|||||+++|+++||++++.++..+++|. |||+||||++. .. .+..
T Consensus 66 ~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-------~~--------------~~~~ 124 (614)
T PRK10512 66 SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-------EA--------------RIAE 124 (614)
T ss_pred HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-------HH--------------HHHH
Confidence 99999999999999999999999999999999999999885 79999999862 11 1111
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
....+...+...++ ..++||||||++|.||++|+..|..+.... -....++++.|..+|.++|.
T Consensus 125 v~~ei~~~l~~~~~------------~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~----~~~~~~~rl~Id~vf~v~G~ 188 (614)
T PRK10512 125 VRRQVKAVLREYGF------------AEAKLFVTAATEGRGIDALREHLLQLPERE----HAAQHRFRLAIDRAFTVKGA 188 (614)
T ss_pred HHHHHHHHHHhcCC------------CCCcEEEEeCCCCCCCHHHHHHHHHhhccc----cCcCCCceEEEEEEeccCCC
Confidence 12233334443333 236899999999999999999987654321 11456899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccceeeccc-cccccCCC
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQG-LEHAIAGT 1106 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~g-L~~~~aG~ 1106 (1384)
|+|++|+|.+|+|++||.|.++|++. . .+|+++++|+..+..| +-+.+.+.| ++......
T Consensus 189 GtVvtGtv~sG~l~~Gd~v~i~p~~~--~--------------~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~r 252 (614)
T PRK10512 189 GLVVTGTALSGEVKVGDTLWLTGVNK--P--------------MRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINR 252 (614)
T ss_pred eEEEEEEEecceEecCCEEEEcCCCC--c--------------EEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCC
Confidence 99999999999999999999876541 2 3455556666555543 335566666 65544555
Q ss_pred ceEEeCC
Q 000625 1107 GLYVVGP 1113 (1384)
Q Consensus 1107 ~l~v~~~ 1113 (1384)
+.+++.+
T Consensus 253 Gdvl~~~ 259 (614)
T PRK10512 253 GDWLLAD 259 (614)
T ss_pred cCEEeCC
Confidence 5555554
No 15
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=2.6e-30 Score=321.98 Aligned_cols=254 Identities=28% Similarity=0.398 Sum_probs=193.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+|+++||+|||||||+++|++.. +.....+|||++++..++.+.. ..++|||||||+.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~----------------~~v~~iDtPGhe~f~ 64 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD----------------YRLGFIDVPGHEKFI 64 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC----------------EEEEEEECCCHHHHH
Confidence 379999999999999999999643 3344568999999877766543 248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..++..+|++|||||+++|+++||.+++.++...++| +|||+||||++. .... ..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-------~~~~--------------~~ 123 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-------EEEI--------------KR 123 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-------HHHH--------------HH
Confidence 9999999999999999999999999999999999999999 999999999962 1110 11
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
....+...+...++ ...+++|||||++|.||.+|+..|..++..... .....+++++|..+|.+.|.
T Consensus 124 ~~~ei~~~l~~~~~-----------~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~--~~~~~p~r~~Id~~f~v~G~ 190 (581)
T TIGR00475 124 TEMFMKQILNSYIF-----------LKNAKIFKTSAKTGQGIGELKKELKNLLESLDI--KRIQKPLRMAIDRAFKVKGA 190 (581)
T ss_pred HHHHHHHHHHHhCC-----------CCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC--cCcCCCcEEEEEEEEecCCc
Confidence 11122223333332 124699999999999999999988766543211 11356899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccceeeccccccccCCCc
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTG 1107 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~ 1107 (1384)
|+|++|+|.+|+|++||.|.+++++ .. .+|+++++|+..+..| +.+.|.+.|++......+
T Consensus 191 GtVv~G~v~~G~i~~Gd~l~i~P~~--~~--------------~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG 254 (581)
T TIGR00475 191 GTVVTGTAFSGEVKVGDNLRLLPIN--HE--------------VRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRG 254 (581)
T ss_pred EEEEEEEEecceEecCCEEEECCCC--ce--------------EEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCc
Confidence 9999999999999999999987653 22 3455566666665543 447777788776545555
Q ss_pred eEEeCCC
Q 000625 1108 LYVVGPD 1114 (1384)
Q Consensus 1108 l~v~~~e 1114 (1384)
++++.+.
T Consensus 255 ~~~~~~~ 261 (581)
T TIGR00475 255 LLILTPE 261 (581)
T ss_pred eEEcCCC
Confidence 5555443
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=8.6e-30 Score=305.05 Aligned_cols=257 Identities=24% Similarity=0.349 Sum_probs=181.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. ..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------~~ 75 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------KR 75 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC----------------Cc
Confidence 34599999999999999999986321 11124677776654444332 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+++..+|++|||||+.+|+++||.++|.++..+++| +|||+||||++. ...+.
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~------~~~~~-- 147 (394)
T PRK12736 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD------DEELL-- 147 (394)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc------hHHHH--
Confidence 589999999999999999999999999999999999999999999999999999 678999999862 11111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC--------ChhhHHHHHHHHHHHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE--------GIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe--------GI~eLl~~L~~~~~~~l~ 1008 (1384)
......+...|...++. +..++|||+||++|. +++.|++.|..+++.+
T Consensus 148 ------------~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~-- 203 (394)
T PRK12736 148 ------------ELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP-- 203 (394)
T ss_pred ------------HHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC--
Confidence 11112344455555543 235799999999994 4566666665544321
Q ss_pred HhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000625 1009 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1009 e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
.-....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|...... .+|+++++|+..+..
T Consensus 204 -~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~--------------~~V~sI~~~~~~~~~ 268 (394)
T PRK12736 204 -ERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQK--------------TVVTGVEMFRKLLDE 268 (394)
T ss_pred -CCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeE--------------EEEEEEEECCEEccE
Confidence 11234679999999999999999999999999999999998876532222 345555565555543
Q ss_pred c-cc--ceeeccccccccCCCceEEeCC
Q 000625 1089 A-QG--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1089 a-~g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+ +| +.+++.|++......+.+++.+
T Consensus 269 a~aGd~v~l~l~~i~~~~i~~G~vl~~~ 296 (394)
T PRK12736 269 GQAGDNVGVLLRGVDRDEVERGQVLAKP 296 (394)
T ss_pred ECCCCEEEEEECCCcHHhCCcceEEecC
Confidence 3 23 4455566654434444444443
No 17
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-30 Score=287.62 Aligned_cols=260 Identities=27% Similarity=0.383 Sum_probs=196.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC----------------cccccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t----------------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|.-+||||||||||+.+|+.. +.....++|||+..... .|+.. .
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHv--eYeTa--------------~ 116 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHV--EYETA--------------K 116 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeee--eeecc--------------c
Confidence 3456999999999999999999731 12344578888765433 33321 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
++|..+|||||.+|..+|..|..+.|++||||.+++|.+|||++||.++++.+++ +||+|||.|++. .+...+
T Consensus 117 RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~------d~e~le 190 (449)
T KOG0460|consen 117 RHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD------DPEMLE 190 (449)
T ss_pred cccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC------CHHHHH
Confidence 5689999999999999999999999999999999999999999999999999986 667999999983 233322
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC---C----CC---hhhHHHHHHHHHHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---G----EG---IPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t---G----eG---I~eLl~~L~~~~~~ 1005 (1384)
.+ -.+++.+|.++||+ |.++|+|..||+. | .| |..|++.+-.+++.
T Consensus 191 LV--------------EmE~RElLse~gf~----------Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 191 LV--------------EMEIRELLSEFGFD----------GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH--------------HHHHHHHHHHcCCC----------CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 22 23567788889986 6788999999985 3 22 33344444333332
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000625 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
+-. ....||.+.|..+|.+.|+|+|++|+|.+|+|+.|+.+-|.|.+..+-+ .|.|+.++++.
T Consensus 247 P~R---~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkt--------------tvtgiemF~K~ 309 (449)
T KOG0460|consen 247 PER---DLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKT--------------TVTGIEMFRKS 309 (449)
T ss_pred ccc---ccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceee--------------EeehHHHHHHH
Confidence 211 2356799999999999999999999999999999999988887643322 35677788888
Q ss_pred hcccc---cceeeccccccccCCCceEEeCCCc
Q 000625 1086 IKAAQ---GIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1086 v~aa~---gv~i~~~gL~~~~aG~~l~v~~~e~ 1115 (1384)
+..|+ .+-+.++||.....-++++++.|..
T Consensus 310 ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 310 LDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred HHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 77664 3566678888777778888877764
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.6e-29 Score=305.80 Aligned_cols=259 Identities=24% Similarity=0.363 Sum_probs=182.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
....+|+|+||+|||||||+++|++... .....+|||++++...+.+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~---------------- 122 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA---------------- 122 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC----------------
Confidence 3445699999999999999999973210 12234778877766655443
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
...|+|||||||.+|...+.+++..+|++|||||+..|+++||.+++.++..+++| +|||+||||++. ...+.
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~------~~~~~ 196 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD------DEELL 196 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC------HHHHH
Confidence 23599999999999999999999999999999999999999999999999999999 578999999862 01111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc---CCCC-------hhhHHHHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI---SGEG-------IPDLLLLLVQWTQ 1004 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~---tGeG-------I~eLl~~L~~~~~ 1004 (1384)
..+ ...+...|...++. +..+||||+||+ +|.| ++.|++.|..+++
T Consensus 197 ~~i--------------~~~i~~~l~~~~~~----------~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 197 ELV--------------EMELRELLSFYKFP----------GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHH--------------HHHHHHHHHHhCCC----------CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 110 11233334433432 245799999987 4555 5667776665443
Q ss_pred HHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC--CceeEEeeeccCCCCCccceeceeeec
Q 000625 1005 KTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ--GPIVTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1005 ~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~--g~~~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
.+. -....+|++.|.++|.+.|.|+|++|+|.+|+|++||.|+++|.. |... .+|+++++|
T Consensus 253 ~p~---r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~--------------~~VksI~~~ 315 (447)
T PLN03127 253 EPV---RVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLK--------------TTVTGVEMF 315 (447)
T ss_pred CCC---cccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEE--------------EEEEEEEEE
Confidence 221 112457999999999999999999999999999999999887643 1223 345556666
Q ss_pred hhhhccc---ccceeeccccccccCCCceEEeCC
Q 000625 1083 HKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1083 ~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+..+..| ..+.+.+.|++......+++++.+
T Consensus 316 ~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 316 KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 6555543 235566666655444445555443
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.9e-30 Score=281.79 Aligned_cols=257 Identities=25% Similarity=0.367 Sum_probs=192.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----------------cccccccCceeEeeeeeEecccccccchhhcccccccCCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGT----------------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----------------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~ 858 (1384)
.+|+.+||+|||||||+.+|... +.....++|||+......+.+. .++
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~----------------~rh 76 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA----------------NRH 76 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC----------------Cce
Confidence 45999999999999999999631 1223445777776655544433 357
Q ss_pred EEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHH
Q 000625 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 859 i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
|.++|||||.+|..+|..|+.+.|++||||+|.+|.+|||++|+.+++..++|. ||++||+|++. ...+.+.
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd------d~ellel- 149 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD------DEELLEL- 149 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC------cHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999975 57999999983 2222221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC-CCCh-------hhHHHHHHHHHHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS-GEGI-------PDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t-GeGI-------~eLl~~L~~~~~~~l~e 1009 (1384)
.-..++.+|..+||. |..+||+..||+. .+|- .+|++.+..|++.+-.
T Consensus 150 -------------VemEvreLLs~y~f~----------gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per- 205 (394)
T COG0050 150 -------------VEMEVRELLSEYGFP----------GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER- 205 (394)
T ss_pred -------------HHHHHHHHHHHcCCC----------CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-
Confidence 224677788888875 5678999999986 3443 3444444333332211
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000625 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
....||.++|.++|.+.|+|++++|+|.+|+|++|+.+.+.|.... ....+.|+.|+.+.+..+
T Consensus 206 --~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~--------------~kttvtgvemfrk~ld~~ 269 (394)
T COG0050 206 --DIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKET--------------QKTTVTGVEMFRKLLDEG 269 (394)
T ss_pred --cccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEeccccc--------------ceeEEEhHHHHHHHHhcc
Confidence 2346799999999999999999999999999999999998875422 223355666666655543
Q ss_pred ---ccceeeccccccccCCCceEEeCCC
Q 000625 1090 ---QGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1090 ---~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
.++.+.++|..+-..-++++++.|.
T Consensus 270 ~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 270 QAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred ccCCCcceEEEeccccceecceEeecCC
Confidence 4677888888777777777777665
No 20
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.4e-29 Score=307.65 Aligned_cols=257 Identities=24% Similarity=0.317 Sum_probs=182.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc----------------ccccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN----------------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~----------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..+|+|+||+|||||||+++|++.. ......+|||.+++..++.+. ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----------------~~ 144 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE----------------NR 144 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------Cc
Confidence 3459999999999999999998521 122344777777766665543 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+|+..+|++|||||+..|+++||.++|.++..+++| +|||+||||++. ...+
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~------~~~~--- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DEEL--- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC------HHHH---
Confidence 599999999999999999999999999999999999999999999999999999 778999999962 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCCh------------------hhHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1384)
+......+...|...||. ...++|||+||++|.++ +.|++.
T Consensus 216 -----------~~~i~~~i~~~l~~~g~~----------~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~ 274 (478)
T PLN03126 216 -----------LELVELEVRELLSSYEFP----------GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDA 274 (478)
T ss_pred -----------HHHHHHHHHHHHHhcCCC----------cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHH
Confidence 111123455556666653 23589999999999654 222222
Q ss_pred HHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece
Q 000625 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1384)
Q Consensus 999 L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~ 1078 (1384)
|..+.+. . .-....||++.|.++|.+.|.|+++.|.|.+|+|++||.|++++.+.....+|+ +
T Consensus 275 l~~~~~~--p-~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~Vk--------------s 337 (478)
T PLN03126 275 VDSYIPI--P-QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVT--------------G 337 (478)
T ss_pred HHHhCCC--C-CCccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEE--------------E
Confidence 2221100 0 011245799999999999999999999999999999999998765322334444 4
Q ss_pred eeechhhhcc---cccceeeccccccccCCCceEEeCC
Q 000625 1079 TYLHHKQIKA---AQGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1079 ~~~~~kev~a---a~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+++++..+.. +..+.+.+.|++......+++++.+
T Consensus 338 I~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 338 VEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred EEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 4454444443 3346666677665444555555544
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.97 E-value=2.1e-29 Score=304.23 Aligned_cols=227 Identities=19% Similarity=0.228 Sum_probs=166.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEeccc-ccccchhh----cc--------cc---c
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAE-NIRERTRE----LK--------AN---A 852 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~-~i~~~~~~----i~--------~~---~ 852 (1384)
..+.+|+++||+|||||||+.+|++.+. .....+|||+.+|..++.+. ....+... .. +. .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4456799999999999999999997543 45556899999998765321 00000000 00 00 0
Q ss_pred -ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCC
Q 000625 853 -TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 853 -~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~ 929 (1384)
......|+|||||||.+|...+.+|++.+|++|||||+.+| +++||.++|.++..++++ +|||+||||++.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~------ 185 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK------ 185 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC------
Confidence 00124699999999999999999999999999999999996 799999999999999985 789999999962
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000625 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
... +...+..+...|... +...++|||+||++|.||+.|++.|...++.+
T Consensus 186 -~~~--------------~~~~~~ei~~~l~~~------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~--- 235 (460)
T PTZ00327 186 -EAQ--------------AQDQYEEIRNFVKGT------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIP--- 235 (460)
T ss_pred -HHH--------------HHHHHHHHHHHHHhh------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC---
Confidence 110 111122233333221 12357999999999999999999887544322
Q ss_pred hhhcccccceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccC
Q 000625 1010 KLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
.-....++++.|..+|.+.| +|+|++|.|.+|+|++||.|.+.+.
T Consensus 236 ~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~ 288 (460)
T PTZ00327 236 KRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPG 288 (460)
T ss_pred CCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccC
Confidence 11235678999999988765 7999999999999999999998865
No 22
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=2.2e-29 Score=313.19 Aligned_cols=257 Identities=26% Similarity=0.300 Sum_probs=187.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc--------------cccCceeEeeeeeEecccccccchhhcccccccC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTN--VQE--------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~--v~~--------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.| +
T Consensus 1 iRN--IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~----------------~ 62 (594)
T TIGR01394 1 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY----------------N 62 (594)
T ss_pred CcE--EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE----------------C
Confidence 577 9999999999999999998632 111 12245555554444443 3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||.+|...+.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+.. +.+..
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~-------a~~~~ 135 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPS-------ARPDE 135 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCC-------cCHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999862 22222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~ 1005 (1384)
. +..+...|...+...+ .-.+|++++||++|. ||..||..|+.+++.
T Consensus 136 v---------------~~ei~~l~~~~g~~~e--------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 136 V---------------VDEVFDLFAELGADDE--------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred H---------------HHHHHHHHHhhccccc--------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1 2223333333332211 124799999999996 788898888877654
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechh
Q 000625 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHK 1084 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~k 1084 (1384)
+. .....||++.|..++++++.|.++.++|++|+|+.||.|.+++.++. ...+|..|+...... +.
T Consensus 193 P~---~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~----------~~ 259 (594)
T TIGR01394 193 PK---GDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLE----------RV 259 (594)
T ss_pred CC---CCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCC----------ce
Confidence 32 12356899999999999999999999999999999999998876442 234555555332211 11
Q ss_pred hhc-ccccceeeccccccccCCCceE
Q 000625 1085 QIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1085 ev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
++. +.+|-.+++.||.....|+++.
T Consensus 260 ~v~~a~aGDiv~i~gl~~i~~Gdtl~ 285 (594)
T TIGR01394 260 EIDEAGAGDIVAVAGLEDINIGETIA 285 (594)
T ss_pred ECCEECCCCEEEEeCCcccCCCCEEe
Confidence 222 2346666667777777777663
No 23
>CHL00071 tufA elongation factor Tu
Probab=99.97 E-value=3.5e-29 Score=301.17 Aligned_cols=257 Identities=25% Similarity=0.331 Sum_probs=177.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|+|.++...++.+. ..
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------~~ 75 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------NR 75 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------------Ce
Confidence 34599999999999999999996421 11223677776655554432 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ...+
T Consensus 76 ~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~------~~~~--- 146 (409)
T CHL00071 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD------DEEL--- 146 (409)
T ss_pred EEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC------HHHH---
Confidence 589999999999999999999999999999999999999999999999999999 778999999962 0111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCCh------------------hhHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGI------------------PDLLLL 998 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI------------------~eLl~~ 998 (1384)
+......+...|...++.. ..+||+|+||++|.|+ +.|++.
T Consensus 147 -----------~~~~~~~l~~~l~~~~~~~----------~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~ 205 (409)
T CHL00071 147 -----------LELVELEVRELLSKYDFPG----------DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDA 205 (409)
T ss_pred -----------HHHHHHHHHHHHHHhCCCC----------CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHH
Confidence 1111234445565555531 3479999999999864 233333
Q ss_pred HHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceece
Q 000625 999 LVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKG 1078 (1384)
Q Consensus 999 L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~ 1078 (1384)
|..+++.+ .-....+|++.|..+|.++|.|++++|+|.+|+|++||.|+++|...... .+|++
T Consensus 206 l~~~~~~p---~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~--------------~~Vks 268 (409)
T CHL00071 206 VDSYIPTP---ERDTDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKT--------------TTVTG 268 (409)
T ss_pred HHhhCCCC---CCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcE--------------EEEEE
Confidence 32221100 01124579999999999999999999999999999999998765422222 34455
Q ss_pred eeechhhhccc-cc--ceeeccccccccCCCceEEeCC
Q 000625 1079 TYLHHKQIKAA-QG--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1079 ~~~~~kev~aa-~g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+++++..+..| +| +.+++.|++......+.+++.+
T Consensus 269 I~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 269 LEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred EEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 55555444433 23 4555556554334444444433
No 24
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=7.3e-29 Score=297.22 Aligned_cols=257 Identities=23% Similarity=0.342 Sum_probs=180.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
+.+|+|+||+|||||||+++|++... .....+|||.+++...+.+. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------~~ 75 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------NR 75 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------Cc
Confidence 45699999999999999999986311 11224677777655444332 24
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+.+++..+|++|||||+..|+.+||.++|.++...++|.| ||+||||++. ....
T Consensus 76 ~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~------~~~~--- 146 (396)
T PRK12735 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL--- 146 (396)
T ss_pred EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc------hHHH---
Confidence 58999999999999999999999999999999999999999999999999999976 5899999862 1111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~~ 1006 (1384)
+......+...|..+++. +..++|||+||++|. |++.|++.|..+++.+
T Consensus 147 -----------~~~~~~ei~~~l~~~~~~----------~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 147 -----------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred -----------HHHHHHHHHHHHHHcCCC----------cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 111112344445555442 235799999999995 5666666665543211
Q ss_pred HHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhh
Q 000625 1007 MVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQI 1086 (1384)
Q Consensus 1007 l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev 1086 (1384)
.-....+|++.|.++|.++|.|++++|+|.+|+|++||.|.+++.+... .++|+++++|+..+
T Consensus 206 ---~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~--------------~~~VksI~~~~~~v 268 (396)
T PRK12735 206 ---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQ--------------KTTVTGVEMFRKLL 268 (396)
T ss_pred ---CccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCe--------------EEEEEEEEECCeEe
Confidence 1123457999999999999999999999999999999999887643222 34455556665555
Q ss_pred ccc---ccceeeccccccccCCCceEEeCC
Q 000625 1087 KAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1087 ~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
..| ..+.++++|++......+.+++.+
T Consensus 269 ~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 269 DEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred CEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 433 335555566654434444444443
No 25
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=3.2e-29 Score=303.39 Aligned_cols=259 Identities=25% Similarity=0.374 Sum_probs=183.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc--c-----------------------------cccCceeEeeeeeEecccccc
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ--E-----------------------------GEAGGITQQIGATYFPAENIR 842 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~--~-----------------------------ge~gGITq~iga~~~~~~~i~ 842 (1384)
..+|+|+||+|||||||+++|++.... . ...+|+|.+++...+.+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~---- 81 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET---- 81 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec----
Confidence 356999999999999999999853211 0 11345555555444433
Q ss_pred cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC--CCCHHHHHHHHHHHhcCC-ceEEEEeec
Q 000625 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMRNT-EFIVALNKV 919 (1384)
Q Consensus 843 ~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~~v-P~IVaINKi 919 (1384)
....|+|||||||.+|...+.++++.+|++|||||+++ |+.+||.+++.++...++ |+|||+|||
T Consensus 82 ------------~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 82 ------------DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred ------------CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 33469999999999999988899999999999999999 999999999999998887 589999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|++. |.. ..|......+...+...|+.. ..+++|||||++|.||.++...+
T Consensus 150 Dl~~-~~~------------------~~~~~~~~~i~~~l~~~g~~~----------~~~~ii~iSA~~g~gi~~~~~~~ 200 (425)
T PRK12317 150 DAVN-YDE------------------KRYEEVKEEVSKLLKMVGYKP----------DDIPFIPVSAFEGDNVVKKSENM 200 (425)
T ss_pred cccc-ccH------------------HHHHHHHHHHHHHHHhhCCCc----------CcceEEEeecccCCCccccccCC
Confidence 9862 210 111222233444454555431 24689999999999999876655
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000625 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1000 ~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.||..+.+.+.|. ...||++.|.++|.+.|.|++++|+|.+|+|++||.|++++++ ....
T Consensus 201 ~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~--~~~~---------- 268 (425)
T PRK12317 201 PWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAG--VVGE---------- 268 (425)
T ss_pred CcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCC--CeEE----------
Confidence 4444444444442 2357899999999999999999999999999999999987754 2334
Q ss_pred ccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000625 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1072 ~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
|+++++|+..+..| ..+.+.+.|++....-.+.+++.+
T Consensus 269 ----VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 269 ----VKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred ----EEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 44555555554433 335666666654333344444443
No 26
>PRK00049 elongation factor Tu; Reviewed
Probab=99.96 E-value=8.8e-29 Score=296.41 Aligned_cols=257 Identities=23% Similarity=0.338 Sum_probs=181.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|+|+||+|||||||+++|++... .....+|+|.+++...+.+. .
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~ 74 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------K 74 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------------C
Confidence 345699999999999999999986321 11225677777665444332 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+.+++..+|++|||||+..|+++||.++|.++..+++|+| ||+||||++. ....
T Consensus 75 ~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~------~~~~-- 146 (396)
T PRK00049 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD------DEEL-- 146 (396)
T ss_pred eEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc------hHHH--
Confidence 359999999999999999999999999999999999999999999999999999986 5899999862 0110
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~ 1005 (1384)
+......+...|...|+. +..+||+|+||++|. |++.|++.|..+++.
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~ 204 (396)
T PRK00049 147 ------------LELVEMEVRELLSKYDFP----------GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPT 204 (396)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCC
Confidence 111122344455555542 235799999999986 455666665543321
Q ss_pred HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000625 1006 TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1006 ~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
+ .-....||++.|.++|.++|.|++++|+|.+|+|++||.|+++|...... .+|+++++++..
T Consensus 205 p---~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~--------------~~VksI~~~~~~ 267 (396)
T PRK00049 205 P---ERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQK--------------TTVTGVEMFRKL 267 (396)
T ss_pred C---CCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCce--------------EEEEEEEECCcE
Confidence 1 11234679999999999999999999999999999999998876532223 345555666655
Q ss_pred hccc-cc--ceeeccccccccCCCceEEeC
Q 000625 1086 IKAA-QG--IKITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1086 v~aa-~g--v~i~~~gL~~~~aG~~l~v~~ 1112 (1384)
+..| +| +.+.++|++....-.+.+++.
T Consensus 268 ~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 268 LDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred eCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 5543 23 455556654433334444444
No 27
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=6.1e-29 Score=297.91 Aligned_cols=258 Identities=24% Similarity=0.354 Sum_probs=174.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc----------------cccccCceeEeeeeeEecccccccchhhcccccccCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV----------------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v----------------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
++.+|+|+||+|||||||+++|++... .....+|+|.++....+.+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------~ 74 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------N 74 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----------------C
Confidence 445699999999999999999974311 11223677777654444322 2
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccccCcccCCCchHHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+.+++..+|++|||||+.+|+.+||.++|.++..+++|+| ||+||||++.. ..+
T Consensus 75 ~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~------~~~-- 146 (394)
T TIGR00485 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD------EEL-- 146 (394)
T ss_pred EEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH------HHH--
Confidence 358999999999999999999999999999999999999999999999999999976 68999998620 000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHHHHHHHH-----
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWTQKTMVE----- 1009 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~~~~l~e----- 1009 (1384)
+......+...|..+++. +..+++|++||++|. |...+...+..++.. +..
T Consensus 147 ------------~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~-l~~~~~~~ 203 (394)
T TIGR00485 147 ------------LELVEMEVRELLSEYDFP----------GDDTPIIRGSALKALEGDAEWEAKILELMDA-VDEYIPTP 203 (394)
T ss_pred ------------HHHHHHHHHHHHHhcCCC----------ccCccEEECccccccccCCchhHhHHHHHHH-HHhcCCCC
Confidence 111112344455555442 234799999999986 444443322222211 111
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000625 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
.-....+|++.|..+|.++|.|++++|+|.+|+|++||.|++++... ....+|+++++++..+..|
T Consensus 204 ~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~--------------~~~~~VksI~~~~~~~~~a 269 (394)
T TIGR00485 204 ERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKD--------------TRKTTVTGVEMFRKELDEG 269 (394)
T ss_pred CCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCC--------------CcEEEEEEEEECCeEEEEE
Confidence 01124579999999999999999999999999999999998865321 1223455556655554433
Q ss_pred -cc--ceeeccccccccCCCceEEe
Q 000625 1090 -QG--IKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1090 -~g--v~i~~~gL~~~~aG~~l~v~ 1111 (1384)
+| +.+.+.|++......+.+++
T Consensus 270 ~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 270 RAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred CCCCEEEEEeCCccHHHCCccEEEe
Confidence 23 44445555433333344443
No 28
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.6e-29 Score=288.88 Aligned_cols=229 Identities=28% Similarity=0.350 Sum_probs=180.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCc---------------ccccccCceeEeeeeeEecccccccchhhcccccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN---------------VQEGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~---------------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
..++|| ++|+.|.|||||||.++|+... ....+.+|||+...+..+.+.....
T Consensus 6 ~~~IRN--FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g---------- 73 (603)
T COG0481 6 QKNIRN--FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDG---------- 73 (603)
T ss_pred hhhccc--eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCC----------
Confidence 357899 9999999999999999998421 1223458888887777666543110
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000625 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
+.+.|+|||||||.+|+-.++|.+..|.++||||||+.|++.||+-...++...++-+|.|||||||+ .++.
T Consensus 74 -~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP-------~Adp 145 (603)
T COG0481 74 -ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP-------AADP 145 (603)
T ss_pred -CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC-------CCCH
Confidence 12459999999999999999999999999999999999999999999999999999999999999996 4554
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhc
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~ 1013 (1384)
.....+ +..+ .|+.. ...|.+||+||.||+++|+.|+..++.+- -..
T Consensus 146 ervk~e------------Ie~~------iGid~------------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~---g~~ 192 (603)
T COG0481 146 ERVKQE------------IEDI------IGIDA------------SDAVLVSAKTGIGIEDVLEAIVEKIPPPK---GDP 192 (603)
T ss_pred HHHHHH------------HHHH------hCCCc------------chheeEecccCCCHHHHHHHHHhhCCCCC---CCC
Confidence 322111 1111 24432 36789999999999999999998877653 345
Q ss_pred ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCC
Q 000625 1014 RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHP 1070 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p 1070 (1384)
+.|+++.|++++++..+|.++.++|.+|+|+.||.|.+.+++......--.+++|..
T Consensus 193 ~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~ 249 (603)
T COG0481 193 DAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKM 249 (603)
T ss_pred CCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCc
Confidence 778999999999999999999999999999999999988876433223334556653
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.96 E-value=9.4e-29 Score=283.40 Aligned_cols=272 Identities=24% Similarity=0.277 Sum_probs=196.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhccc---ccccCCCCEEEEeCCC
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA---NATLKVPGLLVIDTPG 866 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~---~~~~~~~~i~~IDTPG 866 (1384)
..+|| |+|+.|||||||||++.|+..+-.-.+..-++.. .+-..+-.++|+++|-+ ...|+...|+|+||||
T Consensus 3 ~~iRN--IAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER---vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRN--IAIIAHVDHGKTTLVDALLKQSGTFREREEVAER---VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccce--eEEEEEecCCcchHHHHHHhhccccccccchhhh---hcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 46888 9999999999999999998643211110000000 00011111233333322 1245566799999999
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|.+|...+.|.++..|.|||||||.+|.+|||+-++.-+...+++.||||||||++. +..
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~-------Arp------------- 137 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPD-------ARP------------- 137 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCC-------CCH-------------
Confidence 999999999999999999999999999999999999999999999999999999963 222
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHHHHHHHHhhhcccc
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWTQKTMVEKLTFRNE 1016 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~~~~l~e~l~~~~~ 1016 (1384)
...+..+..+|...|-+.+. -++|+|..||+.|. ++.-||+.|+.+.+.+. .+...|
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQ--------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~---~~~d~P 204 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQ--------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK---GDLDEP 204 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhh--------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC---CCCCCC
Confidence 22345566667666654332 35799999999884 56667777777766543 345678
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeechhhhc-cccccee
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKI 1094 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i 1094 (1384)
|++.|.-.-|...+|....|+|.+|++++|+.|.+....|.+ ..+|..||....++.+ ++. +..|-.+
T Consensus 205 lQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~----------ei~eA~AGDIV 274 (603)
T COG1217 205 LQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERI----------EIEEAEAGDIV 274 (603)
T ss_pred eEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeee----------ecccccccCEE
Confidence 999998888999999999999999999999999888766543 3455556544333322 223 3468888
Q ss_pred eccccccccCCCceE
Q 000625 1095 TAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1095 ~~~gL~~~~aG~~l~ 1109 (1384)
++.||+...+|+++.
T Consensus 275 aiaG~~~~~igdTi~ 289 (603)
T COG1217 275 AIAGLEDINIGDTIC 289 (603)
T ss_pred EEcCccccccccccc
Confidence 999999888888764
No 30
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=3.3e-28 Score=294.55 Aligned_cols=258 Identities=27% Similarity=0.399 Sum_probs=180.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC--ccc-----------------------------ccccCceeEeeeeeEeccccccc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGT--NVQ-----------------------------EGEAGGITQQIGATYFPAENIRE 843 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t--~v~-----------------------------~ge~gGITq~iga~~~~~~~i~~ 843 (1384)
.+|+|+||+|||||||+++|++. .+. ....+|+|.+++...+.+.
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~---- 83 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD---- 83 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC----
Confidence 45999999999999999999852 111 0123466666665555443
Q ss_pred chhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC---CCHHHHHHHHHHHhcCC-ceEEEEeec
Q 000625 844 RTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESLNLLKMRNT-EFIVALNKV 919 (1384)
Q Consensus 844 ~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l~llk~~~v-P~IVaINKi 919 (1384)
...|+|||||||..|...+.+++..+|++|||||+++| ..+||.+++.++...++ |+|||+|||
T Consensus 84 ------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 84 ------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred ------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 24599999999999999999999999999999999999 88999999988887775 688999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|++ .|.. ..+......+...+...|+.. ..++||||||++|.||.++...+
T Consensus 152 Dl~-~~~~------------------~~~~~~~~ei~~~~~~~g~~~----------~~~~~i~iSA~~g~ni~~~~~~~ 202 (426)
T TIGR00483 152 DSV-NYDE------------------EEFEAIKKEVSNLIKKVGYNP----------DTVPFIPISAWNGDNVIKKSENT 202 (426)
T ss_pred hcc-CccH------------------HHHHHHHHHHHHHHHHcCCCc----------ccceEEEeeccccccccccccCC
Confidence 996 2311 111222233444455555431 34699999999999998755443
Q ss_pred HHHHHHHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000625 1000 VQWTQKTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1000 ~~~~~~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.|+....+.+.|. ...||++.|.++|.+.|.|++++|+|.+|+|++||.|++++.+ ...
T Consensus 203 ~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~--~~~----------- 269 (426)
T TIGR00483 203 PWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG--VSG----------- 269 (426)
T ss_pred ccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCC--cEE-----------
Confidence 3332233333332 2357899999999999999999999999999999999987653 223
Q ss_pred ccceeceeeechhhhccc---ccceeeccccccccCCCceEEeCC
Q 000625 1072 KELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1072 ~e~rvk~~~~~~kev~aa---~gv~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
.|+++++++..+..| ..+.|.+.|++....-.+++++.+
T Consensus 270 ---~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 270 ---EVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred ---EEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 345555555554433 335556666654434445555443
No 31
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.9e-28 Score=280.03 Aligned_cols=249 Identities=29% Similarity=0.425 Sum_probs=196.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+|+.+||+|||||||+..|.+.. ......+|||+++|.++++.... .++|||+|||++|.
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~----------------~~~fIDvpgh~~~i 64 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG----------------VMGFIDVPGHPDFI 64 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC----------------ceEEeeCCCcHHHH
Confidence 378999999999999999998754 33445689999999999887642 48999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..|++..|+|+|||++++|+++||.|||..|..++++. |||+||+|++.. + +...
T Consensus 65 ~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~------~---------------r~e~ 123 (447)
T COG3276 65 SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE------A---------------RIEQ 123 (447)
T ss_pred HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH------H---------------HHHH
Confidence 99999999999999999999999999999999999999887 999999999731 0 1122
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCc
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGH 1030 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~ 1030 (1384)
.+.+|...+. | ...++|++|+.+|+||.+|.+.|..+.. ....+...+|+..|..+|.++|.
T Consensus 124 ~i~~Il~~l~---l------------~~~~i~~~s~~~g~GI~~Lk~~l~~L~~---~~e~d~~~~fri~IDraFtVKGv 185 (447)
T COG3276 124 KIKQILADLS---L------------ANAKIFKTSAKTGRGIEELKNELIDLLE---EIERDEQKPFRIAIDRAFTVKGV 185 (447)
T ss_pred HHHHHHhhcc---c------------ccccccccccccCCCHHHHHHHHHHhhh---hhhhccCCceEEEEeeEEEeccc
Confidence 2334433332 1 2458899999999999999999987764 12234678899999999999999
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc---ccccceeeccccccccCCCc
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIKITAQGLEHAIAGTG 1107 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~---aa~gv~i~~~gL~~~~aG~~ 1107 (1384)
|||++|.+.+|.+++||.+++.|.+ ++++|++++.|...+. |++-|.+++.|.+.-..-++
T Consensus 186 GTVVtGtv~sG~V~v~D~L~l~p~~----------------k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG 249 (447)
T COG3276 186 GTVVTGTVLSGEVKVGDKLYLSPIN----------------KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERG 249 (447)
T ss_pred cEEEEeEEeeeeEEECCEEEEecCC----------------CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcc
Confidence 9999999999999999999987665 3456667766655444 44445566666644445566
Q ss_pred eEEeCCC
Q 000625 1108 LYVVGPD 1114 (1384)
Q Consensus 1108 l~v~~~e 1114 (1384)
+++++++
T Consensus 250 ~~L~~~~ 256 (447)
T COG3276 250 DWLLKPE 256 (447)
T ss_pred cEeccCC
Confidence 6665544
No 32
>PRK10218 GTP-binding protein; Provisional
Probab=99.96 E-value=4e-28 Score=301.45 Aligned_cols=259 Identities=23% Similarity=0.255 Sum_probs=186.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcC--cccc--------------cccCceeEeeeeeEecccccccchhhcccccc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGT--NVQE--------------GEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t--~v~~--------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
.++|+ |+|+||+|||||||+++|++. .+.. ...+|||.......+.|
T Consensus 3 ~~iRn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~--------------- 65 (607)
T PRK10218 3 EKLRN--IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW--------------- 65 (607)
T ss_pred CCceE--EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec---------------
Confidence 35787 999999999999999999962 2211 11345555554444443
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000625 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
....|+|||||||.+|..++.++++.+|++|||||+.+|+++||..+|..+...++|+|||+||||+. ++.+
T Consensus 66 -~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~-------~a~~ 137 (607)
T PRK10218 66 -NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP-------GARP 137 (607)
T ss_pred -CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC-------CCch
Confidence 33469999999999999999999999999999999999999999999999999999999999999985 3333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC----------ChhhHHHHHHHHH
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE----------GIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe----------GI~eLl~~L~~~~ 1003 (1384)
...+. .+...|...++.. ....+||+++||++|. ||..||+.|+.++
T Consensus 138 ~~vl~---------------ei~~l~~~l~~~~--------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 138 DWVVD---------------QVFDLFVNLDATD--------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hHHHH---------------HHHHHHhccCccc--------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 33222 2222232222211 1134799999999998 5777777777766
Q ss_pred HHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeec
Q 000625 1004 QKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1004 ~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
+.+. .....||++.|..++++++.|.++.++|++|+|+.||.|++++..+.. ..+|..|+......
T Consensus 195 P~P~---~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~---------- 261 (607)
T PRK10218 195 PAPD---VDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLE---------- 261 (607)
T ss_pred CCCC---CCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCC----------
Confidence 5432 133567999999999999999999999999999999999887653321 23444443222111
Q ss_pred hhhhc-ccccceeeccccccccCCCceE
Q 000625 1083 HKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1083 ~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+..+. +.+|-.+++.||..+.+|+++.
T Consensus 262 ~~~v~~a~AGdIvai~gl~~~~~GdTl~ 289 (607)
T PRK10218 262 RIETDLAEAGDIVAITGLGELNISDTVC 289 (607)
T ss_pred ceECCEEcCCCEEEEECccccccCcEEe
Confidence 11222 3357677777888777787763
No 33
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.95 E-value=3.5e-27 Score=283.52 Aligned_cols=236 Identities=21% Similarity=0.291 Sum_probs=148.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccccc---------cCcee---EeeeeeEecc-cccccchhhccc---ccccCCC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGE---------AGGIT---QQIGATYFPA-ENIRERTRELKA---NATLKVP 857 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~ge---------~gGIT---q~iga~~~~~-~~i~~~~~~i~~---~~~~~~~ 857 (1384)
.|+|+||+|||||||+++|++.. +.... ..|.+ ..+. +.+.+ ...+.|..++.. .+.+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~-~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLA-LLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeee-eeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999998532 11100 01111 0000 11111 111122222211 1223445
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++| +|||+||||++. |. .. .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~-~~----~~---~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD-YD----EE---V 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc-ch----HH---H
Confidence 699999999999999999999999999999999999999999999999998875 788999999962 21 00 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh----
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---- 1012 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~---- 1012 (1384)
|......+...+...++ ..+++||+||++|+||..+...+.|+-...|.+.|.
T Consensus 153 -----------~~~i~~~~~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~ 209 (406)
T TIGR02034 153 -----------FENIKKDYLAFAEQLGF------------RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEV 209 (406)
T ss_pred -----------HHHHHHHHHHHHHHcCC------------CCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCC
Confidence 11111222223333333 246899999999999986543322221122222221
Q ss_pred ----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000625 1013 ----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 1013 ----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
...++++.|..++.....+..+.|+|.+|+|++||.|++++.+ ..++|+++
T Consensus 210 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI 264 (406)
T TIGR02034 210 ERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSG--RSSRVARI 264 (406)
T ss_pred CCCcCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCC--cEEEEEEE
Confidence 2356888888876543323336799999999999999987643 23444443
No 34
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-26 Score=289.91 Aligned_cols=350 Identities=23% Similarity=0.282 Sum_probs=220.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhcccc---cccCC-CCEEEEe
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKAN---ATLKV-PGLLVID 863 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~~---~~~~~-~~i~~ID 863 (1384)
..++|| |+|+||+|||||||+++|+...-.....|. .+-|+++..|.. .++|+++++.. +.|.. ..|+|||
T Consensus 7 ~~~~RN--igI~aHidaGKTTltE~lL~~tG~i~k~G~--v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIRN--IGIVAHIDAGKTTLTERILFYTGIISKIGE--VHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccceE--EEEEeccCCChHHHHHHHHHHcCCcCCCcc--ccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 567888 999999999999999999854322222111 122333333321 12333333221 23442 5799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000625 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|+..+.|+++.+|+||+|||+..|+++||...|+++..+++|.|+++||||++ .++|...+.+....
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~-------~a~~~~~~~~l~~~ 155 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL-------GADFYLVVEQLKER 155 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc-------ccChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 45555555443322
Q ss_pred HHH-------------HH--------------H-----------HHHHH--------HHHHHHHcCC-chhhhhcccC--
Q 000625 944 VQN-------------EF--------------N-----------MRLVQ--------IVTQLKEQGM-NTELYYKNKD-- 974 (1384)
Q Consensus 944 v~~-------------ef--------------~-----------~~i~~--------I~~~L~~~Gl-~~e~~~~~~d-- 974 (1384)
+.. .| . ..... ++..+.+... ..+.|.....
T Consensus 156 l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~ 235 (697)
T COG0480 156 LGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPT 235 (697)
T ss_pred hCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCcc
Confidence 211 00 0 00000 0000000000 0001111100
Q ss_pred -------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh-----------------hhcccccceEEEEE
Q 000625 975 -------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----------------LTFRNELQCTVLEV 1024 (1384)
Q Consensus 975 -------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-----------------l~~~~~~~~~VlEv 1024 (1384)
-+..+|+++.||..+-|+..||+.++.+++.++... .....|+.+.|+.+
T Consensus 236 ~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi 315 (697)
T COG0480 236 EEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKI 315 (697)
T ss_pred HHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEe
Confidence 134789999999999999999999999987653321 11245688899999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccC
Q 000625 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIA 1104 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~a 1104 (1384)
...+..|....++|++|+|+.|+.|+..+.+ ...+|-.|+.++.... .....+ ..|..+++.||..+..
T Consensus 316 ~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~--~~erv~~l~~~~~~~~-------~~v~~~--~AG~I~a~~Gl~~~~t 384 (697)
T COG0480 316 MTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG--KKERVGRLLLMHGNER-------EEVDEV--PAGDIVALVGLKDATT 384 (697)
T ss_pred EecCCCCeEEEEEEeccEEcCCCEEEeCCCC--ccEEEEEEEEccCCce-------eecccc--cCccEEEEEccccccc
Confidence 9988889988899999999999988766543 1223333332222111 111122 2466788889999888
Q ss_pred CCceEEeCCCccHHHH--------------HHHHHHHHHHHHhhhhccCCceEEEeC---------CcC--cHHHHHHHh
Q 000625 1105 GTGLYVVGPDDDLEDV--------------KEEAMEDMKSVMSRIDKSGEGVCVQAS---------TLG--SLEALLEFL 1159 (1384)
Q Consensus 1105 G~~l~v~~~e~~~~~~--------------~~~~~~~~~~~~~~i~~~~~gvivkad---------t~G--SlEAl~~~L 1159 (1384)
|+++...+..-..+.+ ...-+..|...|+++...+-.+.|.-| -.| .||-+++-|
T Consensus 385 GdTl~~~~~~v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl 464 (697)
T COG0480 385 GDTLCDENKPVILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRL 464 (697)
T ss_pred CCeeecCCCccccccccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHH
Confidence 9888755411001100 112234566667777666656666553 234 377777666
Q ss_pred c
Q 000625 1160 K 1160 (1384)
Q Consensus 1160 ~ 1160 (1384)
+
T Consensus 465 ~ 465 (697)
T COG0480 465 K 465 (697)
T ss_pred H
Confidence 5
No 35
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.95 E-value=6.8e-27 Score=291.84 Aligned_cols=213 Identities=29% Similarity=0.358 Sum_probs=162.4
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeEeeeeeEecccccccchhhccccccc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATL 854 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~ 854 (1384)
.++|| |+|+||+|||||||+++|++.. +.. ...+|||.....+.+.|.... -
T Consensus 5 ~~iRN--i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~d-----------g 71 (600)
T PRK05433 5 KNIRN--FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKD-----------G 71 (600)
T ss_pred ccCCE--EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccC-----------C
Confidence 56888 9999999999999999998632 111 123455555544444332100 0
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....|+|||||||.+|...+.++++.||++|||||+++|++.||..+|.++...++|+|+|+||||+.. +++.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~-------a~~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPA-------ADPE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCc-------ccHH
Confidence 123589999999999999999999999999999999999999999999999888999999999999852 2211
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcc
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFR 1014 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~ 1014 (1384)
..+ ..+... .++. ...+|++||++|.||.+|+.+|..+++.+.. ...
T Consensus 145 ~v~---------------~ei~~~---lg~~------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~---~~~ 191 (600)
T PRK05433 145 RVK---------------QEIEDV---IGID------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKG---DPD 191 (600)
T ss_pred HHH---------------HHHHHH---hCCC------------cceEEEEecCCCCCHHHHHHHHHHhCccccC---CCC
Confidence 110 111111 1221 1258999999999999999999887765421 345
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000625 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
.++++.|+++++++++|.++.++|.+|+|+.||.|.+++++
T Consensus 192 ~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~ 232 (600)
T PRK05433 192 APLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTG 232 (600)
T ss_pred CCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCC
Confidence 67999999999999999999999999999999999887765
No 36
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=9.5e-27 Score=279.91 Aligned_cols=225 Identities=25% Similarity=0.286 Sum_probs=162.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEeccccccc------chhhcccc----cccCCCCEE
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIRE------RTRELKAN----ATLKVPGLL 860 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~~i~~------~~~~i~~~----~~~~~~~i~ 860 (1384)
+.+|+|+||+|||||||+++|.+... .....+|+|..+|..++.+..... .+....+. .......|+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 45699999999999999999976432 223357899998876654321000 00000000 001134699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHH
Q 000625 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
|||||||..|...+.++++.+|++|||||+++|+ ++||.+++.++..+++ |+|||+||||++. ... +
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~-------~~~---~- 152 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS-------KEK---A- 152 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC-------HHH---H-
Confidence 9999999999999999999999999999999998 9999999999988886 5899999999862 100 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~ 1018 (1384)
...+..+...+... +...+++||+||++|.||+.|+++|..+++.+ .-....+++
T Consensus 153 ----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~---~~~~~~~~~ 207 (406)
T TIGR03680 153 ----------LENYEEIKEFVKGT------------VAENAPIIPVSALHNANIDALLEAIEKFIPTP---ERDLDKPPL 207 (406)
T ss_pred ----------HHHHHHHHhhhhhc------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCC---CCCCCCCcE
Confidence 01112222222211 11346999999999999999999998655322 112356799
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccC
Q 000625 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1019 ~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~ 1054 (1384)
+.|.++|.+.| +|+|+.|.|.+|+|++||.|.+++.
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccC
Confidence 99999998776 5779999999999999999998765
No 37
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.95 E-value=1e-26 Score=290.10 Aligned_cols=212 Identities=26% Similarity=0.337 Sum_probs=160.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc--cc-------------cccCceeEeeeeeEecccccccchhhcccccccC
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV--QE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
++|| |+|+||+|||||||+++|++... .. ...+|||.......+.|.... -.
T Consensus 2 ~iRN--i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-----------g~ 68 (595)
T TIGR01393 2 NIRN--FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-----------GE 68 (595)
T ss_pred CeeE--EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-----------CC
Confidence 4787 99999999999999999986421 10 123456655544444332100 00
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||.+|..++.+++..||++|||||+++|++.||..+|..+...++|+|+|+||||+.. .++..
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~-------~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPS-------ADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCc-------cCHHH
Confidence 13589999999999999999999999999999999999999999999988888999999999999852 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~ 1015 (1384)
.+ ..+... .++. ...++++||++|.||.+|+.+|...++.+.. ....
T Consensus 142 ~~---------------~el~~~---lg~~------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~---~~~~ 188 (595)
T TIGR01393 142 VK---------------KEIEEV---IGLD------------ASEAILASAKTGIGIEEILEAIVKRVPPPKG---DPDA 188 (595)
T ss_pred HH---------------HHHHHH---hCCC------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCC---CCCC
Confidence 00 111111 1221 1258999999999999999999877654321 2456
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000625 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
|+++.|+.+++++++|.++.++|.+|+|+.||.|.+++++
T Consensus 189 pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~ 228 (595)
T TIGR01393 189 PLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228 (595)
T ss_pred CeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCC
Confidence 7999999999999999999999999999999999887764
No 38
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=2.1e-26 Score=280.96 Aligned_cols=232 Identities=22% Similarity=0.276 Sum_probs=147.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc--ccccc---------cCceeE-ee-eeeEecc-cccccchhhcccc---cccCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN--VQEGE---------AGGITQ-QI-GATYFPA-ENIRERTRELKAN---ATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~--v~~ge---------~gGITq-~i-ga~~~~~-~~i~~~~~~i~~~---~~~~~ 856 (1384)
.+.|+|+||+|||||||+++|++.. +.... ..|.|. .+ .++++.+ ...+.|..++... +.+..
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 3569999999999999999998543 11100 011110 00 0001111 1111222222211 22334
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
..|+|||||||.+|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 107 ~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~-~~~----~--- 178 (474)
T PRK05124 107 RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD-YSE----E--- 178 (474)
T ss_pred cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc-chh----H---
Confidence 579999999999999999999999999999999999999999999999998886 6888999999962 211 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh---
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--- 1012 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~--- 1012 (1384)
.+......+...+...++ ...++|||+||++|.||..+...+.|+....+.+.|.
T Consensus 179 -----------~~~~i~~~l~~~~~~~~~-----------~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~ 236 (474)
T PRK05124 179 -----------VFERIREDYLTFAEQLPG-----------NLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVD 236 (474)
T ss_pred -----------HHHHHHHHHHHHHHhcCC-----------CCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcC
Confidence 011111122222333221 1247999999999999987654322222222222221
Q ss_pred -----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000625 1013 -----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1013 -----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
...++++.|..++........+.|+|.+|+|++||.|++++++
T Consensus 237 ~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~ 284 (474)
T PRK05124 237 IQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSG 284 (474)
T ss_pred CCCCCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCC
Confidence 2346888888876532222225699999999999999987654
No 39
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=258.90 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=170.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------------------------------cccccCceeEeeeeeEeccccc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV---------------------------------QEGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v---------------------------------~~ge~gGITq~iga~~~~~~~i 841 (1384)
..++.||+||.|||||+++|++..- +..+..|||+++..-||.+..
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K- 85 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK- 85 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc-
Confidence 3489999999999999999986321 111235777777776666543
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecc
Q 000625 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVD 920 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiD 920 (1384)
+.|.|.|||||+.|+.+|..|++-||++||+|||.+|+..||+.|..++..+|+ .+||++||||
T Consensus 86 ---------------RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 86 ---------------RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred ---------------ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeec
Confidence 469999999999999999999999999999999999999999999999999997 5788999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
|+ +|++ ..|.........+....|+. .+.+||+||+.|+||-.--..+-
T Consensus 151 Lv-dy~e------------------~~F~~I~~dy~~fa~~L~~~------------~~~~IPiSAl~GDNV~~~s~~mp 199 (431)
T COG2895 151 LV-DYSE------------------EVFEAIVADYLAFAAQLGLK------------DVRFIPISALLGDNVVSKSENMP 199 (431)
T ss_pred cc-ccCH------------------HHHHHHHHHHHHHHHHcCCC------------cceEEechhccCCcccccccCCC
Confidence 98 4432 23444444455555555653 35899999999999977666666
Q ss_pred HHHHHHHHHhhhc--------ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCC
Q 000625 1001 QWTQKTMVEKLTF--------RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTP 1068 (1384)
Q Consensus 1001 ~~~~~~l~e~l~~--------~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p 1068 (1384)
|+..+++++.|.. ..+|+++|..|..-.-.-.-..|+|.+|++++||.|++.+++ ..++|..+.++
T Consensus 200 WY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG--~~s~V~~Ivt~ 273 (431)
T COG2895 200 WYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSG--KTSRVKRIVTF 273 (431)
T ss_pred cccCccHHHHHhhccccccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCC--CeeeEEEEecc
Confidence 6666666665532 345899998876533222345688999999999999998876 34566666554
No 40
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=6e-26 Score=273.01 Aligned_cols=227 Identities=26% Similarity=0.286 Sum_probs=161.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEeeeeeEecccccc------cchhhccc---ccc-cCCCCE
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQIGATYFPAENIR------ERTRELKA---NAT-LKVPGL 859 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~iga~~~~~~~i~------~~~~~i~~---~~~-~~~~~i 859 (1384)
++.+|+|+||+|||||||+++|.+... .....+|+|..++...+.+.... ........ ... .....|
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 445699999999999999999976422 22335789998886554442100 00000000 000 002469
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHH
Q 000625 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+|||||||..|...+.+++..+|++|||||+.+|+ .++|.++|.++...++ |+|||+||+|++.. ..+
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~------~~~---- 157 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK------ERA---- 157 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc------hhH----
Confidence 99999999999999999999999999999999998 8999999999988886 68999999999621 000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccccc
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNEL 1017 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~ 1017 (1384)
...+..+...+... +...+++|++||++|.||+.|+.+|..+++.+. -....++
T Consensus 158 -----------~~~~~~i~~~l~~~------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~---~~~~~~~ 211 (411)
T PRK04000 158 -----------LENYEQIKEFVKGT------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE---RDLDKPP 211 (411)
T ss_pred -----------HHHHHHHHHHhccc------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC---CCCCCCc
Confidence 00111222222111 013468999999999999999999876553221 1124678
Q ss_pred ceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEccCC
Q 000625 1018 QCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1018 ~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
++.|.++|.+.| +|+++.|+|.+|+|++||.|.+++.+
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~ 257 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGI 257 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCc
Confidence 999999998776 46799999999999999999988653
No 41
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.4e-26 Score=267.32 Aligned_cols=227 Identities=26% Similarity=0.439 Sum_probs=171.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--c-----------------------------cccccCceeEeeeeeEeccccc
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN--V-----------------------------QEGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v-----------------------------~~ge~gGITq~iga~~~~~~~i 841 (1384)
....++|+||||+|||||+++|++.- + ...+.+|+|.+++.++|...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 45568999999999999999998521 1 11223555555555554422
Q ss_pred ccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceE
Q 000625 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFI 913 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~I 913 (1384)
...++|||+|||.+|+..+..|...+|++|||||++.| ...||++|..+|+.+|+ .+|
T Consensus 254 --------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli 319 (603)
T KOG0458|consen 254 --------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI 319 (603)
T ss_pred --------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence 24699999999999999999999999999999999875 34799999999999996 689
Q ss_pred EEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHcCCchhhhhcccCCCCceeEEeCCCcCCCCh
Q 000625 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGI 992 (1384)
Q Consensus 914 VaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L-~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI 992 (1384)
|+|||||++ +|.+. +|......+..+| ...||. ...+.|||||+++|+|+
T Consensus 320 vaiNKmD~V-~Wsq~------------------RF~eIk~~l~~fL~~~~gf~----------es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 320 VAINKMDLV-SWSQD------------------RFEEIKNKLSSFLKESCGFK----------ESSVKFIPISGLSGENL 370 (603)
T ss_pred EEeeccccc-CccHH------------------HHHHHHHHHHHHHHHhcCcc----------cCCcceEecccccCCcc
Confidence 999999998 78654 3444445555666 556664 24579999999999998
Q ss_pred hhH--HHHHHHHHH-HHHHHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEE
Q 000625 993 PDL--LLLLVQWTQ-KTMVEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTT 1061 (1384)
Q Consensus 993 ~eL--l~~L~~~~~-~~l~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~ 1061 (1384)
-.. ...+..|+. ++|+..+. +..||+++|++++...+.|.+++|.|.+|.|+.||.|.++++. .-+.
T Consensus 371 ~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~--e~~~ 448 (603)
T KOG0458|consen 371 IKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR--EDAT 448 (603)
T ss_pred cccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc--ceEE
Confidence 654 224444443 34444442 2347999999999999999999999999999999999887654 2344
Q ss_pred eeecc
Q 000625 1062 IRALL 1066 (1384)
Q Consensus 1062 Ir~Ll 1066 (1384)
|+.|.
T Consensus 449 vk~l~ 453 (603)
T KOG0458|consen 449 VKGLT 453 (603)
T ss_pred EEeee
Confidence 55554
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=2.5e-26 Score=248.06 Aligned_cols=165 Identities=39% Similarity=0.553 Sum_probs=124.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc------------------cccCceeEeeeeeEecccccccchhhcccccccCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQE------------------GEAGGITQQIGATYFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~------------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
++|+|+||+|||||||+++|++..... ...+++|..++...+.. .+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~--------------~~~~ 69 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK--------------NENN 69 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB--------------TESS
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc--------------cccc
Confidence 359999999999999999998543221 12245666655554440 1234
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
..|+|||||||.+|...+.+++..+|+||||||+.+|+++||.++|.++..+++|+|||+||||++. .
T Consensus 70 ~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-------~----- 137 (188)
T PF00009_consen 70 RKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-------K----- 137 (188)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-------H-----
T ss_pred cceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-------h-----
Confidence 5699999999999999999999999999999999999999999999999999999999999999861 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH-HHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQ-LKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~-L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
++...+..+... +...++... ..+|+||+||++|.||..|++.|..+++
T Consensus 138 ----------~~~~~~~~~~~~l~~~~~~~~~---------~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 ----------ELEEIIEEIKEKLLKEYGENGE---------EIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTSTTT---------STEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ----------hHHHHHHHHHHHhccccccCcc---------ccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122223333322 333333210 3689999999999999999999987764
No 43
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.93 E-value=3.3e-25 Score=280.27 Aligned_cols=238 Identities=20% Similarity=0.260 Sum_probs=151.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccc-----------ccCceeEe-eee-eEec-ccccccchhhccc---ccccCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEG-----------EAGGITQQ-IGA-TYFP-AENIRERTRELKA---NATLKVP 857 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~g-----------e~gGITq~-iga-~~~~-~~~i~~~~~~i~~---~~~~~~~ 857 (1384)
..|+|+||+|||||||+++|++..-... ...|.|.. +.. +.+. ....+.++.++.. .+.+...
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 3489999999999999999986431100 01222211 110 0111 1111222222221 1234456
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|+|||||||..|...+..++..+|++|||||+..|+++||.+++.++..+++ |+|||+||||++. |.. .
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~-~~~----~---- 175 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD-YDQ----E---- 175 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc-chh----H----
Confidence 79999999999999999999999999999999999999999999999998885 6788999999962 211 0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh----
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT---- 1012 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~---- 1012 (1384)
.+......+...+...++ ..+++||+||++|.||.++...+.|+....+.+.|.
T Consensus 176 ----------~~~~i~~~i~~~~~~~~~------------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~ 233 (632)
T PRK05506 176 ----------VFDEIVADYRAFAAKLGL------------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI 233 (632)
T ss_pred ----------HHHHHHHHHHHHHHHcCC------------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC
Confidence 111112223333444443 246899999999999986443222222222222221
Q ss_pred ----cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeec
Q 000625 1013 ----FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 1013 ----~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~L 1065 (1384)
...|+++.|..++.....+..+.|+|.+|+|++||.|++++++ ...+|+++
T Consensus 234 ~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~--~~~~VksI 288 (632)
T PRK05506 234 ASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSG--KTSRVKRI 288 (632)
T ss_pred CCCcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCC--ceEEEEEE
Confidence 2456888888876532112226799999999999999987654 23444444
No 44
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=251.51 Aligned_cols=284 Identities=23% Similarity=0.343 Sum_probs=194.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeeeeEecccc--cccchhhcccc-----c
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAEN--IRERTRELKAN-----A 852 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge--------------~gGITq~iga~~~~~~~--i~~~~~~i~~~-----~ 852 (1384)
..+|+++||||||||||+.+|..+...+|. .+|.|.++....+-+.. ......++... .
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 356999999999999999999765554443 14445444333222221 11000000000 0
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000625 853 TLKVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
.-...-+.|+||-||+.|.....||+- ..|+.+|||.|++|++..|.+||.++....+|+|||+||||+. +.
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~------~d 270 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV------PD 270 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC------cH
Confidence 011234899999999999999988864 5899999999999999999999999999999999999999997 34
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCch---hhhh------cccCCCC-ceeEEeCCCcCCCChhhHHHHHH
Q 000625 931 APIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNT---ELYY------KNKDRGE-TFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~---e~~~------~~~d~g~-~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..|...+.. |...|...+-.+ .... .....+. .+|||.+|+.||+|++-|..++.
T Consensus 271 dr~~~v~~e---------------i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEE---------------ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHH---------------HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 444333332 222222211000 0000 0001233 78999999999999966655554
Q ss_pred HHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceee
Q 000625 1001 QWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTY 1080 (1384)
Q Consensus 1001 ~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~ 1080 (1384)
+++..- ......+|.+.|.++|.+.|.|+++.|.|.+|.|+.||++.+++.. .+.++++.|+++.
T Consensus 336 -~Lp~rr--~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~------------~G~fr~v~vkSIe 400 (527)
T COG5258 336 -LLPKRR--RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFK------------DGKFREVVVKSIE 400 (527)
T ss_pred -hCCccc--ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCC------------CCcEEEEEEEEEE
Confidence 343321 3456788999999999999999999999999999999999987644 2345677899999
Q ss_pred echhhhcccc-c--ceeeccccccccCCCceEEeCC
Q 000625 1081 LHHKQIKAAQ-G--IKITAQGLEHAIAGTGLYVVGP 1113 (1384)
Q Consensus 1081 ~~~kev~aa~-g--v~i~~~gL~~~~aG~~l~v~~~ 1113 (1384)
+||-.|.+|. | +.|++.|++.-....+|+++..
T Consensus 401 mh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 401 MHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred EeeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 9998887764 3 5666777776555666666553
No 45
>PRK00007 elongation factor G; Reviewed
Probab=99.93 E-value=6.6e-25 Score=279.64 Aligned_cols=285 Identities=24% Similarity=0.249 Sum_probs=187.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---cc---------------ccCceeEeeeeeEecccccccchhhcc
Q 000625 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EG---------------EAGGITQQIGATYFPAENIRERTRELK 849 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~g---------------e~gGITq~iga~~~~~~~i~~~~~~i~ 849 (1384)
...++|| |+|+||+|||||||+++|++..-. .+ ..+|||.+...+.+.
T Consensus 6 ~~~~Irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~------------ 71 (693)
T PRK00007 6 PLERYRN--IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF------------ 71 (693)
T ss_pred cccceeE--EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE------------
Confidence 3567888 999999999999999999842211 00 124444444433333
Q ss_pred cccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCC
Q 000625 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 850 ~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
|....|+|||||||.+|...+.++++.+|++|||||+..|+++||..+|.++...++|+|||+||||+..
T Consensus 72 ----~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~------ 141 (693)
T PRK00007 72 ----WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG------ 141 (693)
T ss_pred ----ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 3445799999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHH
Q 000625 930 NAPIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLK 960 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~-------------------------------------------------ef~~~i~~I~~~L~ 960 (1384)
+++...+......+.. ........++..+.
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 220 (693)
T PRK00007 142 -ADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAA 220 (693)
T ss_pred -CCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHH
Confidence 2233322222111000 00000011111111
Q ss_pred Hc----------C--Cchhhhhc----ccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh--------------
Q 000625 961 EQ----------G--MNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-------------- 1010 (1384)
Q Consensus 961 ~~----------G--l~~e~~~~----~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-------------- 1010 (1384)
+. | +..+.+.. ..-.+..+|++..||+++.||..||+.|+.+++.+....
T Consensus 221 e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~ 300 (693)
T PRK00007 221 EADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEV 300 (693)
T ss_pred ccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccce
Confidence 00 0 00000000 001246789999999999999999999999987654210
Q ss_pred ---hhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc
Q 000625 1011 ---LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1384)
Q Consensus 1011 ---l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~ 1087 (1384)
.++..++.+.|+.+...+..|.+..++|++|+|+.||.|..+.... ..+|..|+.+.... ...|.
T Consensus 301 ~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~--~eki~~l~~~~g~~----------~~~v~ 368 (693)
T PRK00007 301 ERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGK--KERIGRILQMHANK----------REEIK 368 (693)
T ss_pred eecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCc--eeEeceeEEeccCC----------ccccc
Confidence 1234568889999999889999999999999999999886443221 12232332221111 11122
Q ss_pred -ccccceeeccccccccCCCceE
Q 000625 1088 -AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1088 -aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+.+|..+++.||.....|++|.
T Consensus 369 ~~~aGdI~~i~gl~~~~~GdtL~ 391 (693)
T PRK00007 369 EVRAGDIAAAVGLKDTTTGDTLC 391 (693)
T ss_pred ccCCCcEEEEeCCccCCcCCEee
Confidence 2357777778887777787763
No 46
>PRK13351 elongation factor G; Reviewed
Probab=99.93 E-value=1.2e-24 Score=277.92 Aligned_cols=298 Identities=22% Similarity=0.249 Sum_probs=190.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccc-ccccchhhccc---ccccCCCCEEEEeC
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDT 864 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~IDT 864 (1384)
..++|| |+|+||+|||||||+++|++..-.....+.+ +-|.+...+. ..+.+..++.. ...|....|+||||
T Consensus 5 ~~~irn--i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v--~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 5 LMQIRN--IGILAHIDAGKTTLTERILFYTGKIHKMGEV--EDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred cccccE--EEEECCCCCcchhHHHHHHHhcCCccccccc--cCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 346777 9999999999999999998532111000100 0011111110 00112222211 12344457999999
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|||.+|..++.++++.+|++|||||++.|++.+|..+|.++...++|+|||+||+|+. ++++...+......+
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~-------~~~~~~~~~~i~~~l 153 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV-------GADLFKVLEDIEERF 153 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC-------CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 344544444322111
Q ss_pred HH---------------------------------------------HHH----HHHHHHHHHHHHcCC-chhhhhccc-
Q 000625 945 QN---------------------------------------------EFN----MRLVQIVTQLKEQGM-NTELYYKNK- 973 (1384)
Q Consensus 945 ~~---------------------------------------------ef~----~~i~~I~~~L~~~Gl-~~e~~~~~~- 973 (1384)
.. .+. .....++..+....= ..+.|+.+.
T Consensus 154 ~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~ 233 (687)
T PRK13351 154 GKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEE 233 (687)
T ss_pred CCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCC
Confidence 00 000 001111111111100 001111110
Q ss_pred --------------CCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH---------------hhhcccccceEEEEE
Q 000625 974 --------------DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------KLTFRNELQCTVLEV 1024 (1384)
Q Consensus 974 --------------d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---------------~l~~~~~~~~~VlEv 1024 (1384)
..+..+|++++||++|.||..||+.|+.+++.+... ..+...++.+.|+.+
T Consensus 234 l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 234 LSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 124678999999999999999999999998766421 012345688999999
Q ss_pred EEEcCcceEEEEEEEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccccc
Q 000625 1025 KVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAI 1103 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~ 1103 (1384)
...++.|.++.++|++|+|+.||.|.+++.+.. .+.+|..+.... .....+ +.+|..+++.||....
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~----------~~~v~~--~~aGdI~~i~gl~~~~ 381 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNK----------REEVDR--AKAGDIVAVAGLKELE 381 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCC----------eeECCc--cCCCCEEEEECcccCc
Confidence 999999999999999999999999987765421 223333222111 111122 2346677788888877
Q ss_pred CCCceE
Q 000625 1104 AGTGLY 1109 (1384)
Q Consensus 1104 aG~~l~ 1109 (1384)
.|++|.
T Consensus 382 ~gdtl~ 387 (687)
T PRK13351 382 TGDTLH 387 (687)
T ss_pred cCCEEe
Confidence 888774
No 47
>PRK12739 elongation factor G; Reviewed
Probab=99.93 E-value=9.9e-25 Score=278.18 Aligned_cols=284 Identities=23% Similarity=0.225 Sum_probs=185.6
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc---c---------------cccCceeEeeeeeEecccccccchhhccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ---E---------------GEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~---------------ge~gGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
...+|| |+|+||+|||||||+++|++..-. . ...+|||.++...++.|
T Consensus 5 ~~~irn--i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~------------ 70 (691)
T PRK12739 5 LEKTRN--IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW------------ 70 (691)
T ss_pred ccCeeE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE------------
Confidence 346777 999999999999999999852110 0 01344555544444433
Q ss_pred ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000625 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
....|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|+++...++|+|||+||||+..
T Consensus 71 ----~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~------- 139 (691)
T PRK12739 71 ----KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG------- 139 (691)
T ss_pred ----CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------
Confidence 345699999999999999999999999999999999999999999999999999999999999999972
Q ss_pred chHHHHHHHhhHHHHH-------------------------------------------------HHHHHHHHHHHHHHH
Q 000625 931 APIVKAIKQQNTDVQN-------------------------------------------------EFNMRLVQIVTQLKE 961 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~~-------------------------------------------------ef~~~i~~I~~~L~~ 961 (1384)
+++...+......+.. ........++..+.+
T Consensus 140 ~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 219 (691)
T PRK12739 140 ADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAE 219 (691)
T ss_pred CCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222221111100 000000111111100
Q ss_pred ------------cCCchhhhh----cccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh---------------
Q 000625 962 ------------QGMNTELYY----KNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK--------------- 1010 (1384)
Q Consensus 962 ------------~Gl~~e~~~----~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~--------------- 1010 (1384)
..+..+... +....+..+|++.+||++|.||..||+.|+.+++.+....
T Consensus 220 ~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 299 (691)
T PRK12739 220 VDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIER 299 (691)
T ss_pred cCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceee
Confidence 001000000 0001246689999999999999999999999887654210
Q ss_pred -hhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCC-ceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000625 1011 -LTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1011 -l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g-~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
.++..++.+.|+.+.+.+..|.++.++|++|+|+.||.|..+..+. ..+.+|..|.... +....+ +
T Consensus 300 ~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~----------~~~v~~--~ 367 (691)
T PRK12739 300 PASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANK----------REEIKE--V 367 (691)
T ss_pred ccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCC----------cccccc--c
Confidence 1234568889999999889999999999999999999886543321 1122332222111 011111 2
Q ss_pred cccceeeccccccccCCCceE
Q 000625 1089 AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1089 a~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
.+|..+.+.||.....|++|.
T Consensus 368 ~aGdI~~i~gl~~~~~gdtl~ 388 (691)
T PRK12739 368 YAGDIAAAVGLKDTTTGDTLC 388 (691)
T ss_pred CCCCEEEEeCCCcccCCCEEe
Confidence 346677777887777787774
No 48
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.92 E-value=1.4e-24 Score=278.12 Aligned_cols=288 Identities=23% Similarity=0.260 Sum_probs=181.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEeccc-ccccchhhcccc---ccc----CCCCE
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAE-NIRERTRELKAN---ATL----KVPGL 859 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~-~i~~~~~~i~~~---~~~----~~~~i 859 (1384)
..++|| |+|+||+|||||||+++|++..-. .....| +++++.+. ..+.|..++... ..| ....|
T Consensus 17 ~~~iRn--i~iigh~d~GKTTL~e~ll~~~g~i~~~~~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 17 PEQIRN--IGIIAHIDHGKTTLSDNLLAGAGMISEELAG-----EQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred hhcccE--EEEEEeCCCCHHHHHHHHHHHcCCcchhhcC-----cceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 467888 999999999999999999853211 100000 01111111 111222222221 111 13458
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHH
Q 000625 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||+. .++|...+.
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~-------~~~~~~~~~- 161 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL-------IKELKLTPQ- 161 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh-------cccccCCHH-
Confidence 999999999999999999999999999999999999999999999988899999999999986 233322222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhh--hhcccCCCCceeEEeCCCcCCCChh------------------------
Q 000625 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTEL--YYKNKDRGETFNIVPTSAISGEGIP------------------------ 993 (1384)
Q Consensus 940 q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~--~~~~~d~g~~v~iVpvSA~tGeGI~------------------------ 993 (1384)
.++..|...+..+...+..+. ...+ .|.... ..-.+++.||+.|+|+.
T Consensus 162 ---~~~~~~~~~~~e~~~~l~~~~-~~~~~~~~~~~~--~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~ 235 (731)
T PRK07560 162 ---EMQQRLLKIIKDVNKLIKGMA-PEEFKEKWKVDV--EDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQK 235 (731)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh-hhhhhcceeecC--CCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHH
Confidence 222333332333322222211 0111 011100 11246788999998886
Q ss_pred ----------hHHHHHHHHHHHHHHHh----------------------hhcccccceEEEEEEEEcCcceEEEEEEEee
Q 000625 994 ----------DLLLLLVQWTQKTMVEK----------------------LTFRNELQCTVLEVKVIEGHGTTIDVVLVNG 1041 (1384)
Q Consensus 994 ----------eLl~~L~~~~~~~l~e~----------------------l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G 1041 (1384)
.||+.|+.+++.+.... .+...++.+.|+.+...+++|.++.++|++|
T Consensus 236 ~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sG 315 (731)
T PRK07560 236 ELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSG 315 (731)
T ss_pred HHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEe
Confidence 67788877776654210 1223467888999999999999999999999
Q ss_pred eecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000625 1042 VLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1042 ~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+|+.||.|.+.+.+.. .+|..|....... ...+. +.+|..+++.||.....|++|.
T Consensus 316 tL~~Gd~v~~~~~~~~--~~v~~i~~~~g~~----------~~~v~~a~AGdIv~i~gl~~~~~GdtL~ 372 (731)
T PRK07560 316 TLRKGQEVYLVGAKKK--NRVQQVGIYMGPE----------REEVEEIPAGNIAAVTGLKDARAGETVV 372 (731)
T ss_pred EEcCCCEEEEcCCCCc--eEeheehhhhcCC----------CceeeeECCCCEEEEEcccccccCCEEe
Confidence 9999999988765422 2333332111000 11122 2246677777887777787764
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.92 E-value=2.2e-24 Score=275.09 Aligned_cols=285 Identities=23% Similarity=0.223 Sum_probs=187.6
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcccc--------c----------ccCceeEeeeeeEecccccccchhhcc
Q 000625 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQE--------G----------EAGGITQQIGATYFPAENIRERTRELK 849 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~--------g----------e~gGITq~iga~~~~~~~i~~~~~~i~ 849 (1384)
...++|| |+|+||+|||||||+++|++..-.. + ..+|||.++....+.
T Consensus 6 ~~~~irn--i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~------------ 71 (689)
T TIGR00484 6 DLNRFRN--IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF------------ 71 (689)
T ss_pred ccccccE--EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE------------
Confidence 3567888 9999999999999999998522110 0 123444444444443
Q ss_pred cccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCC
Q 000625 850 ANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 850 ~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
|+...|+|||||||.+|...+.++++.+|++|||||+..|++.||..+|+++...++|+|||+||||+..
T Consensus 72 ----~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~------ 141 (689)
T TIGR00484 72 ----WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG------ 141 (689)
T ss_pred ----ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC------
Confidence 3345699999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CchHHHHHHHhhHHHH--------------------------------------------HHHH----HHHHHHHHH---
Q 000625 930 NAPIVKAIKQQNTDVQ--------------------------------------------NEFN----MRLVQIVTQ--- 958 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~--------------------------------------------~ef~----~~i~~I~~~--- 958 (1384)
+++...+......+. ..+. .....++..
T Consensus 142 -~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 142 -ANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred -CCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 233322222111100 0000 000111111
Q ss_pred ----HHHc-----CCchhhhhc----ccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH----------------
Q 000625 959 ----LKEQ-----GMNTELYYK----NKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------- 1009 (1384)
Q Consensus 959 ----L~~~-----Gl~~e~~~~----~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---------------- 1009 (1384)
|.+. .+..+.++. ....+..+|++..||++|.||..||+.|+.+++.+...
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~ 300 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIER 300 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeee
Confidence 1100 011111110 01135678999999999999999999999998765421
Q ss_pred hhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC-CceeEEeeeccCCCCCccceeceeeechhhhcc
Q 000625 1010 KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1010 ~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~-g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a 1088 (1384)
......++.+.|+.+.+.+..|.++.++|++|+|+.||.|...... ...+.+|..+. .... ..... +
T Consensus 301 ~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~---g~~~-------~~v~~--~ 368 (689)
T TIGR00484 301 KASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMH---ANNR-------EEIKE--V 368 (689)
T ss_pred cCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEee---cCCc-------ccccc--c
Confidence 0122456888999999999999999999999999999998754322 11222332222 1110 01111 2
Q ss_pred cccceeeccccccccCCCceE
Q 000625 1089 AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1089 a~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
.+|..+++.||.....|++|.
T Consensus 369 ~aGdI~~i~gl~~~~~gdtl~ 389 (689)
T TIGR00484 369 RAGDICAAIGLKDTTTGDTLC 389 (689)
T ss_pred CCCCEEEEcCCCCCCCCCEEe
Confidence 356677778888777788774
No 50
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.92 E-value=1.6e-24 Score=266.60 Aligned_cols=296 Identities=18% Similarity=0.232 Sum_probs=188.0
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccc-cccchhhccc---ccccCCCCEEEEe
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAEN-IRERTRELKA---NATLKVPGLLVID 863 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~ID 863 (1384)
..+|| |+|+||+|||||||+++|++..-.....|.+... -..+...+.. .+.++.++.. .+.|+...|+|||
T Consensus 8 ~~~Rn--i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 8 AKRRT--FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hcCCE--EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 46777 9999999999999999998532221122211100 0001111111 1223333322 2345556799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000625 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|...+.++++.+|++|||||+..|+..||..+|.++...++|+|||+||||+. ++++...+......
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~-------~a~~~~~l~~i~~~ 158 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD-------GREPLELLDEIEEV 158 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc-------ccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 33443333222111
Q ss_pred HHHH---------------------------H----------------------H-----HHHHHHHHHH---HHcCCch
Q 000625 944 VQNE---------------------------F----------------------N-----MRLVQIVTQL---KEQGMNT 966 (1384)
Q Consensus 944 v~~e---------------------------f----------------------~-----~~i~~I~~~L---~~~Gl~~ 966 (1384)
+... | . ..+.++...+ ...+..
T Consensus 159 l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~- 237 (526)
T PRK00741 159 LGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE- 237 (526)
T ss_pred hCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc-
Confidence 1000 0 0 0000000000 000000
Q ss_pred hhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH-----hhhc-ccccceEEEEEEE---EcCcceEEEEE
Q 000625 967 ELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE-----KLTF-RNELQCTVLEVKV---IEGHGTTIDVV 1037 (1384)
Q Consensus 967 e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e-----~l~~-~~~~~~~VlEvk~---~~G~G~vi~~i 1037 (1384)
.....-.-+..+|+++.||++|.||..||+.|+.+++.+... .+.+ ..++.+.|+.+.. .+.+|.++.++
T Consensus 238 -~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 238 -FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred -hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 000000125678999999999999999999999998766421 1111 3458888888873 45889999999
Q ss_pred EEeeeecCCCEEEEccCCCc-eeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000625 1038 LVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1038 V~~G~Lr~GD~Ivv~g~~g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
|++|+|+.|+.|....++.. .+.++..++... ...|. +.+|-.+++.++....+|++|.
T Consensus 317 V~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~-------------~~~v~~a~aGDIv~v~~l~~~~~GDTL~ 377 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTGKDVRISNALTFMAQD-------------REHVEEAYAGDIIGLHNHGTIQIGDTFT 377 (526)
T ss_pred EeccEECCCCEEEeccCCceEEecceEEEecCC-------------ceECceeCCCCEEEEECCCCCccCCCcc
Confidence 99999999999876554321 111222222111 11222 3368888889999899999885
No 51
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.91 E-value=1.6e-23 Score=257.99 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=186.9
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccc-cccchhhccc---ccccCCCCEEEEe
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAEN-IRERTRELKA---NATLKVPGLLVID 863 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~ID 863 (1384)
.++|+ |+|+||+|||||||+++|+...-.....|.+... ...+...+.. .+.+..++.. .+.|+...|+|||
T Consensus 9 ~~~Rn--iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 9 DKRRT--FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred ccCCE--EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 45677 9999999999999999997532111111111000 0011122211 1222333322 2345566799999
Q ss_pred CCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000625 864 TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 864 TPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
||||.+|...+.++++.+|++|||||+..|+..+|..+|.+++..++|+|||+||||+. .+++...+......
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~-------~~~~~~ll~~i~~~ 159 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD-------IRDPLELLDEVENE 159 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc-------CCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 22332222211111
Q ss_pred HHHH---------------------------H---------------------------HHHHHHHH---HHHHHc--CC
Q 000625 944 VQNE---------------------------F---------------------------NMRLVQIV---TQLKEQ--GM 964 (1384)
Q Consensus 944 v~~e---------------------------f---------------------------~~~i~~I~---~~L~~~--Gl 964 (1384)
+... | ...+..+. ..+... .+
T Consensus 160 l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~ 239 (527)
T TIGR00503 160 LKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEF 239 (527)
T ss_pred hCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence 0000 0 00000000 001110 00
Q ss_pred chhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHh-----hh-cccccceEEEEEEE--E-cCcceEEE
Q 000625 965 NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEK-----LT-FRNELQCTVLEVKV--I-EGHGTTID 1035 (1384)
Q Consensus 965 ~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~-----l~-~~~~~~~~VlEvk~--~-~G~G~vi~ 1035 (1384)
.... -.-+..+|+++.||+++.||..||+.|+.+++.+.... +. ...++.+.|+.+.. + ..+|.++.
T Consensus 240 ~~~~----~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 240 DLAA----FHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CHHH----HhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 0000 11357789999999999999999999999987664211 11 13458899999876 5 47999999
Q ss_pred EEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000625 1036 VVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1036 ~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
++|++|+|+.|+.|....++.. .+|..++...... ...|. +.+|-.+.+.++.....|++|.
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~~----------~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGKD--VVISDALTFMAGD----------REHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCCc--EEecchhhhhcCC----------ceEcceeCCCCEEEEECCCCcccCCEec
Confidence 9999999999999876544321 2233332211111 11222 3367788888998888898874
No 52
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.4e-24 Score=254.14 Aligned_cols=276 Identities=24% Similarity=0.319 Sum_probs=189.1
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--------c----------ccccCceeEeeeeeEecccccccchhhccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV--------Q----------EGEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v--------~----------~ge~gGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
-..+|| |.|+.|.|+|||||.+++++... . ..+.+|||++.+++++.|..
T Consensus 36 ~~k~RN--Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---------- 103 (721)
T KOG0465|consen 36 LNKIRN--IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---------- 103 (721)
T ss_pred hhhhcc--cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc----------
Confidence 347888 99999999999999999985321 1 12346788888888887763
Q ss_pred ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCC
Q 000625 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~ 930 (1384)
..|+|||||||.+|+-.+.|++++.|+||||+|+..|++.||..+|++++.+++|+|++|||||+. .
T Consensus 104 ------~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm-------G 170 (721)
T KOG0465|consen 104 ------YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM-------G 170 (721)
T ss_pred ------ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc-------C
Confidence 459999999999999999999999999999999999999999999999999999999999999997 3
Q ss_pred chHHHHHHHhhHHHH-------------------------------------------------------HHHHHHHHHH
Q 000625 931 APIVKAIKQQNTDVQ-------------------------------------------------------NEFNMRLVQI 955 (1384)
Q Consensus 931 a~~~~~l~~q~~~v~-------------------------------------------------------~ef~~~i~~I 955 (1384)
+++..+|.+....+. +.+-+.+..+
T Consensus 171 a~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~ 250 (721)
T KOG0465|consen 171 ASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADV 250 (721)
T ss_pred CChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 555555554432221 1111111122
Q ss_pred HHHHHHcCCchhhhhcccC---------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH---hhh-----
Q 000625 956 VTQLKEQGMNTELYYKNKD---------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---KLT----- 1012 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d---------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e---~l~----- 1012 (1384)
...|.+ .|..... -+.++|+++.||+.+.||.-||+.++.+++.+..- .+.
T Consensus 251 DE~l~e------~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~ 324 (721)
T KOG0465|consen 251 DETLAE------MFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNS 324 (721)
T ss_pred hHHHHH------HHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCC
Confidence 222221 1211111 25789999999999999999999999999754311 111
Q ss_pred ---------c-ccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeec
Q 000625 1013 ---------F-RNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLH 1082 (1384)
Q Consensus 1013 ---------~-~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~ 1082 (1384)
. .+||-+..+.+...+- |...+++|++|+|+.||+|.-.-++ .. .+|-.|+.++...
T Consensus 325 ~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg-KK-vrv~RL~rmHa~~---------- 391 (721)
T KOG0465|consen 325 KEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG-KK-VRVGRLVRMHAND---------- 391 (721)
T ss_pred ccceEeccCCCCCceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCC-ce-eEhHHHhHhcccc----------
Confidence 1 1245555554443333 8899999999999999998754332 22 2333344333211
Q ss_pred hhhhccc-ccceeeccccccccCCCceE
Q 000625 1083 HKQIKAA-QGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1083 ~kev~aa-~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
...|..+ .|..+++.|++ ...|++|.
T Consensus 392 medV~~v~AG~I~alfGid-casGDTft 418 (721)
T KOG0465|consen 392 MEDVNEVLAGDICALFGID-CASGDTFT 418 (721)
T ss_pred cchhhhhhccceeeeeccc-cccCceec
Confidence 1233332 46677777883 44576653
No 53
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.5e-24 Score=235.51 Aligned_cols=242 Identities=25% Similarity=0.322 Sum_probs=177.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~-------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
|.+|.|+||+|+|||||..+|.... ......+|||.++|...+........ ... ..-+++||||||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parL----pq~---e~lq~tlvDCPG 79 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARL----PQG---EQLQFTLVDCPG 79 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccccc----Ccc---ccceeEEEeCCC
Confidence 4679999999999999999997421 23445689999999876654322110 000 012589999999
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|...+.....|+...|++|||||+..|.++||.++|-+...+-...|||+||||.... . |+..-
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE------~--------qr~sk-- 143 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE------N--------QRASK-- 143 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc------h--------hhhhH--
Confidence 9999999999999999999999999999999999998888887789999999998732 1 11111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC----CChhhHHHHHHHHHHHHHHHhhhcccccceEEE
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG----EGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVL 1022 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG----eGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~Vl 1022 (1384)
+......+..-|...+ ++++.|||++||..| ++|++|...|...+- ...-+...||-+.|.
T Consensus 144 -i~k~~kk~~KtLe~t~-----------f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if---~P~Rd~~gpflm~vD 208 (522)
T KOG0461|consen 144 -IEKSAKKVRKTLESTG-----------FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF---EPKRDEEGPFLMAVD 208 (522)
T ss_pred -HHHHHHHHHHHHHhcC-----------cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc---CCCcCCCCCeEEEee
Confidence 1111223333444433 467899999999999 677777666543321 123345678999999
Q ss_pred EEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc
Q 000625 1023 EVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA 1089 (1384)
Q Consensus 1023 Evk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa 1089 (1384)
..+.++|.|+|++|.|.+|.|+.|+.|-+...+ ..-+|+++.+++..|..+
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~----------------e~rkVKslqmf~~~vtsa 259 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALN----------------EKRKVKSLQMFKQRVTSA 259 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccc----------------hhhhhhhHHHHhhhhhhh
Confidence 999999999999999999999999998875322 122467777777776644
No 54
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=8.3e-24 Score=230.21 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=118.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhcccccccCCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPG 858 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~ 858 (1384)
.+|+|+||+|||||||+++|++.... ....+|+|.+.+...+.+ ....
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~----------------~~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET----------------ANRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC----------------CCeE
Confidence 46999999999999999999864211 112355665555444433 2346
Q ss_pred EEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHH
Q 000625 859 LLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 859 i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
|+|||||||..|...+.+++..+|++|||||+..|+++||.++|.++...++| +|||+||||++. ....
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~------~~~~---- 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD------DEEL---- 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC------cHHH----
Confidence 99999999999999999999999999999999999999999999999999998 789999999862 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhh
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~e 994 (1384)
+......+...|...|++. ..++|||+||++|.|+..
T Consensus 137 ----------~~~~~~~i~~~l~~~g~~~----------~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 137 ----------LELVEMEVRELLSKYGFDG----------DNTPIVRGSALKALEGDD 173 (195)
T ss_pred ----------HHHHHHHHHHHHHHhcccc----------cCCeEEEeeCccccCCCC
Confidence 1112234566677777642 358999999999999753
No 55
>PRK12740 elongation factor G; Reviewed
Probab=99.90 E-value=1.9e-22 Score=257.38 Aligned_cols=289 Identities=23% Similarity=0.237 Sum_probs=178.7
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccc-ccccchhhccc---ccccCCCCEEEEeCCCCcchhHHHH
Q 000625 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 800 lGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
+||+|||||||+++|++........+.+ +-|.+...+. ..+.++.++.. .+.|....|+|||||||.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~--~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEV--EDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccc--cCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 6999999999999997532111000000 0111111111 11122222221 1234445699999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH----------
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ---------- 945 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~---------- 945 (1384)
+++..+|++|||||++.++..++..+|+.+...++|+|||+||+|+.. ..+...+......+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~-------~~~~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG-------ADFFRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHHHHHHHHHHHCCCceeEEecc
Confidence 999999999999999999999999999999999999999999999862 222222222111000
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHc------------CCchhhhhc----cc
Q 000625 946 ------------------------------------NEFNMRLVQIVTQLKEQ------------GMNTELYYK----NK 973 (1384)
Q Consensus 946 ------------------------------------~ef~~~i~~I~~~L~~~------------Gl~~e~~~~----~~ 973 (1384)
.........++..+... .+..+.++. ..
T Consensus 152 ~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~ 231 (668)
T PRK12740 152 GEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKAT 231 (668)
T ss_pred cCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 00000001111111110 010010000 00
Q ss_pred CCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH--------------hhhcccccceEEEEEEEEcCcceEEEEEEE
Q 000625 974 DRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE--------------KLTFRNELQCTVLEVKVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 974 d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e--------------~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~ 1039 (1384)
..+..+|++.+||++|.||..||+.|+.+++.+..- ..+...++.+.|+.+.+.++.|.++.++|+
T Consensus 232 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~ 311 (668)
T PRK12740 232 LAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVY 311 (668)
T ss_pred HcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEe
Confidence 124678999999999999999999999988766421 123345688899999999999999999999
Q ss_pred eeeecCCCEEEEccCCC-ceeEEeeeccCCCCCccceeceeeechhhhcccccceeeccccccccCCCceE
Q 000625 1040 NGVLHEGDQIVVCGLQG-PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1040 ~G~Lr~GD~Ivv~g~~g-~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+|+|+.||.|.+.+... ..+.+|..|.... .....+ +.+|..+++.||.....|++|.
T Consensus 312 sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~----------~~~v~~--~~aGdI~~i~gl~~~~~Gdtl~ 370 (668)
T PRK12740 312 SGTLKKGDTLYNSGTGKKERVGRLYRMHGKQ----------REEVDE--AVAGDIVAVAKLKDAATGDTLC 370 (668)
T ss_pred eeEEcCCCEEEeCCCCCcEEecceeeecCCC----------ccccCc--cCCCCEEEEeccCccCCCCEEe
Confidence 99999999998776432 1233333332110 011112 2346666667887777777764
No 56
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.1e-23 Score=230.95 Aligned_cols=224 Identities=27% Similarity=0.302 Sum_probs=165.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEeccc----ccccchhhc--cc---ccc-cCCCCEE
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAE----NIRERTREL--KA---NAT-LKVPGLL 860 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~----~i~~~~~~i--~~---~~~-~~~~~i~ 860 (1384)
..+|.++||||||||||+.+|.+-. +...-.+|||+.+|....+.. .....+... .+ ... --.+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 3569999999999999999998643 233345899999986433321 110000000 01 111 1135699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHH
Q 000625 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
|+|+|||+-+...|..|+...|+|||||+|+.. .+|||.+||-.|.-.++ .+||+-||||++.. .++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~---------E~A-- 158 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR---------ERA-- 158 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH---------HHH--
Confidence 999999999999999999999999999999975 68999999999998886 68899999999831 111
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccc
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQ 1018 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~ 1018 (1384)
-+.+.+|..++.. .+..+.|+||+||..+.||+.|+..|..+++.+.. +...+..
T Consensus 159 ----------lE~y~qIk~FvkG------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r---d~~~~p~ 213 (415)
T COG5257 159 ----------LENYEQIKEFVKG------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTPER---DLDKPPR 213 (415)
T ss_pred ----------HHHHHHHHHHhcc------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc---CCCCCce
Confidence 1233455544432 23456799999999999999999999888765433 3456778
Q ss_pred eEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEcc
Q 000625 1019 CTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1019 ~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
+.|..+|.+.- .|-|+.|-|.+|.|++||.|-|-+
T Consensus 214 m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrP 256 (415)
T COG5257 214 MYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRP 256 (415)
T ss_pred EEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecC
Confidence 89999887743 578889999999999999997654
No 57
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.89 E-value=6.3e-23 Score=262.41 Aligned_cols=280 Identities=20% Similarity=0.232 Sum_probs=171.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-c---------------cccCceeEeeeeeEecccccccchhhccccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-E---------------GEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~---------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
...+|| |+|+||+|||||||+++|++..-. . ...+|||.+.....+.+ ..
T Consensus 16 ~~~irn--I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~------------~~ 81 (720)
T TIGR00490 16 PKFIRN--IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVH------------EY 81 (720)
T ss_pred cccccE--EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEE------------ee
Confidence 346787 999999999999999999853211 0 00122232222111100 12
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCch
Q 000625 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1384)
.+....|+|||||||.+|...+.++++.+|++|||||+..|+..+|..+|+++...++|+|||+||||+.. ++
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-------~~ 154 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI-------NE 154 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc-------ch
Confidence 33445799999999999999999999999999999999999999999999999889999999999999963 33
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhh---hhcccCCCCceeEEeCCCcCCCC------------------
Q 000625 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTEL---YYKNKDRGETFNIVPTSAISGEG------------------ 991 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~---~~~~~d~g~~v~iVpvSA~tGeG------------------ 991 (1384)
|...+. .++..|...+..+...+... +...+ |..... ...++.+|++.+++
T Consensus 155 ~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~---~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~ 226 (720)
T TIGR00490 155 LKLTPQ----ELQERFIKIITEVNKLIKAM-APEEFRDKWKVRVE---DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYK 226 (720)
T ss_pred hcCCHH----HHHHHHhhhhHHHHhhhhcc-CCHHHhhceEechh---hCCHHHHhhhhcccccchhHhhcCCCHHHHHH
Confidence 322222 23333433333333333221 00000 000000 00112223322211
Q ss_pred ----------------hhhHHHHHHHHHHHHHHH---h-------------------hhcccccceEEEEEEEEcCcceE
Q 000625 992 ----------------IPDLLLLLVQWTQKTMVE---K-------------------LTFRNELQCTVLEVKVIEGHGTT 1033 (1384)
Q Consensus 992 ----------------I~eLl~~L~~~~~~~l~e---~-------------------l~~~~~~~~~VlEvk~~~G~G~v 1033 (1384)
+..||+.|+.+++.+..- + .+...++.+.|+.+...++.|.+
T Consensus 227 ~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~i 306 (720)
T TIGR00490 227 YCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEV 306 (720)
T ss_pred HHHhccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEE
Confidence 234566666665544310 0 01134578899999989999999
Q ss_pred EEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeeccccccccCCCceE
Q 000625 1034 IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1034 i~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~~gL~~~~aG~~l~ 1109 (1384)
+.++|++|+|+.||.|++++.+. ..+|+.|..+.... ...+. +.+|..+++.||.....|++|.
T Consensus 307 a~~RV~sGtL~~G~~l~~~~~~~--~~kv~~l~~~~g~~----------~~~v~~a~aGdIv~i~gl~~~~~GdtL~ 371 (720)
T TIGR00490 307 AVGRLYSGTIRPGMEVYIVDRKA--KARIQQVGVYMGPE----------RVEVDEIPAGNIVAVIGLKDAVAGETIC 371 (720)
T ss_pred EEEEEEeCEEcCCCEEEEcCCCC--eeEeeEEEEeccCC----------ccCccEECCCCEEEEECccccccCceee
Confidence 99999999999999998877652 23344433211100 01222 2346667777887777777663
No 58
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.89 E-value=7.8e-24 Score=236.33 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=196.8
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc--------------cCceeEeeeeeEecccccccchhhc---ccccc
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE--------------AGGITQQIGATYFPAENIRERTREL---KANAT 853 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge--------------~gGITq~iga~~~~~~~i~~~~~~i---~~~~~ 853 (1384)
++-...|+|+|+||+||||||..|+++.+..|+ ..|-|..+|...+-++..-.....- .....
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 333345999999999999999999877665543 1445555554443332211000000 00111
Q ss_pred cC------CCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCc
Q 000625 854 LK------VPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 854 ~~------~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w 925 (1384)
|- ..-|+|||..||+.|......|+. ..|+.+|+|-++.|+-..|.+||.++..+.+|++||++|||+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCP-- 287 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCP-- 287 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCc--
Confidence 11 123999999999999988777764 58999999999999999999999999999999999999999983
Q ss_pred ccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh-hcc--------cC--CCCceeEEeCCCcCCCChhh
Q 000625 926 KTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY-YKN--------KD--RGETFNIVPTSAISGEGIPD 994 (1384)
Q Consensus 926 ~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~-~~~--------~d--~g~~v~iVpvSA~tGeGI~e 994 (1384)
+++.+.. +.-+...|...|...-.. .++ .+ -...||||.+|.+||+|++-
T Consensus 288 -----ANiLqEt--------------mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 288 -----ANILQET--------------MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred -----HHHHHHH--------------HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence 4443222 222333344444321100 000 11 23678999999999999987
Q ss_pred HHHHHHHHHHHHHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccc
Q 000625 995 LLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKEL 1074 (1384)
Q Consensus 995 Ll~~L~~~~~~~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~ 1074 (1384)
|..+|. ++. +...+..++|+.+.|.++|+++|.|+++.+.+.+|+|+.+|.+++++..... +.|-|++.+
T Consensus 349 LkmFLN-lls--~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~-------F~pI~iKSI 418 (641)
T KOG0463|consen 349 LKMFLN-LLS--LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGD-------FMPIPIKSI 418 (641)
T ss_pred HHHHHh-hcC--cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCC-------eeeeehhhh
Confidence 666654 332 2234566788999999999999999999999999999999998886653111 112222211
Q ss_pred eeceeeechhhhcccccceeeccccccccCCCceEEeCCC
Q 000625 1075 RVKGTYLHHKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1075 rvk~~~~~~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
-...|.+..|++++...+++..+.+.....+|++|.+.
T Consensus 419 --HRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 419 --HRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred --hhccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 11234556677777777888888887788888888665
No 59
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.88 E-value=2.4e-22 Score=260.50 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=98.3
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCcc--c--------------ccccCceeEeeeeeEecccccccchhhcccc
Q 000625 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v--~--------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~ 851 (1384)
.+.++|| |+|+||+|||||||+++|++.+- . ....+|||...+...+.|.............
T Consensus 15 ~~~~Irn--i~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRN--MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccE--EEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 3567898 99999999999999999985431 1 1112455555444444432100000000000
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.......|+|||||||.+|...+.++++.||+||||||+..|++.||..+|+++...++|+|||+||||++
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 00113458999999999999999999999999999999999999999999999999999999999999997
No 60
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.9e-23 Score=232.58 Aligned_cols=292 Identities=24% Similarity=0.297 Sum_probs=195.8
Q ss_pred CCccccccCCCCEEEEEcCCCCCHHHHHHHHHcCc--------cccc----------ccCceeEeeeeeEecccccccch
Q 000625 784 TPKQAEENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQEG----------EAGGITQQIGATYFPAENIRERT 845 (1384)
Q Consensus 784 ~a~~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~--------v~~g----------e~gGITq~iga~~~~~~~i~~~~ 845 (1384)
.+++....+|| |.||.|+|+||||.+.+|++-. |..| +.+|||.+..+..|.|.
T Consensus 29 ~~~p~~akirn--igiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk------ 100 (753)
T KOG0464|consen 29 IINPAIAKIRN--IGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------ 100 (753)
T ss_pred CCCCchhhhhc--ceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc------
Confidence 44556678999 9999999999999999998521 2222 34677777777766654
Q ss_pred hhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCc
Q 000625 846 RELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGW 925 (1384)
Q Consensus 846 ~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w 925 (1384)
.+.|++||||||.+|+-.+.|++++.|++|.|+|++.|+++||+.+|+++..+++|.+++|||||..
T Consensus 101 ----------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~--- 167 (753)
T KOG0464|consen 101 ----------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL--- 167 (753)
T ss_pred ----------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh---
Confidence 4569999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccCCCchHHHHHHHhhHHH-------------------------------------------------------HHHHHH
Q 000625 926 KTCRNAPIVKAIKQQNTDV-------------------------------------------------------QNEFNM 950 (1384)
Q Consensus 926 ~~~~~a~~~~~l~~q~~~v-------------------------------------------------------~~ef~~ 950 (1384)
.++|..++......+ ...+..
T Consensus 168 ----~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae 243 (753)
T KOG0464|consen 168 ----AANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAE 243 (753)
T ss_pred ----hhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHH
Confidence 233333332221111 000000
Q ss_pred HHHHHHHHHHHcC--Cc---hhhhhcccC----------------CCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQG--MN---TELYYKNKD----------------RGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 951 ~i~~I~~~L~~~G--l~---~e~~~~~~d----------------~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
.-..++.++.... |. .+-|..|.+ -...+|+.+.||+++.||.-|++.+.-+++.+-..
T Consensus 244 ~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeer 323 (753)
T KOG0464|consen 244 AKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEER 323 (753)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhc
Confidence 0011111111100 00 000000100 12567999999999999999999887777643322
Q ss_pred ---hhh-cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhh
Q 000625 1010 ---KLT-FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQ 1085 (1384)
Q Consensus 1010 ---~l~-~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~ke 1085 (1384)
.|. |.+.+++..+.|-.++.+|+...-+||+|+|+..-.|. ..+|-....|..|+.|-.-. |.+
T Consensus 324 nyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~--nin~~~se~~~kl~~pfade----------~~~ 391 (753)
T KOG0464|consen 324 NYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIF--NINGMCSEGILKLFLPFADE----------HRE 391 (753)
T ss_pred chHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeee--ecccccccchHhhhccchhh----------hhh
Confidence 222 24566666777778899999999999999999886653 33444555666666664211 122
Q ss_pred hcc-cccceeeccccccccCCCceEEeC
Q 000625 1086 IKA-AQGIKITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1086 v~a-a~gv~i~~~gL~~~~aG~~l~v~~ 1112 (1384)
|.. ..|..-...||.....|++++...
T Consensus 392 i~qlsagnialt~glk~tatgdtivask 419 (753)
T KOG0464|consen 392 IEQLSAGNIALTAGLKHTATGDTIVASK 419 (753)
T ss_pred hhhcccccEEEEecceeeccCCeEEecc
Confidence 222 133333445999988999877543
No 61
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=8.8e-22 Score=206.48 Aligned_cols=165 Identities=55% Similarity=0.816 Sum_probs=127.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|+|+|+|++++|||||+++|+...+.....+++|++++.+.+.+.. .....++|||||||..|..++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------------~~~~~~~iiDtpG~~~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-------------LKIPGITFIDTPGHEAFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-------------CCcceEEEEeCCCcHHHHHHH
Confidence 7899999999999999999998888777777888888766665431 012359999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
.+++..+|++|+|||++++...++.+++.++...++|+|||+||+|+... ... .
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-------~~~-------------------~ 121 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNA-------NPE-------------------R 121 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccc-------cHH-------------------H
Confidence 99999999999999999999999999999999999999999999998621 100 0
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+...+....... + ..++..++++++||++|.||.+|+.+|..+.
T Consensus 122 ~~~~~~~~~~~~--~---~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQG--E---DEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhccc--c---ccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 011111111000 0 0123457999999999999999999997654
No 62
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.3e-21 Score=220.27 Aligned_cols=247 Identities=19% Similarity=0.267 Sum_probs=165.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeE---eeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCc
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ---QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq---~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe 868 (1384)
..+|+-|+|+|||||+..|+.-.-....+|.+.- ... +...|.. .++|++.++. .+.|....|+|+|||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~-a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKH-AKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcc-cccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3999999999999999999843222222222211 111 1122322 2344444433 345666779999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH---
Q 000625 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ--- 945 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~--- 945 (1384)
+|+.-+.|.+..+|.||+|||+..|+++||+..+..|+.+++|+|-+|||+|+.. .+..+.|...-..+.
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~-------rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG-------RDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc-------CChHHHHHHHHHHhCcce
Confidence 9999999999999999999999999999999999999999999999999999852 122222221111110
Q ss_pred --------------------------------------------------HHHHHH-HHHHHHH---HHHc--CCchhhh
Q 000625 946 --------------------------------------------------NEFNMR-LVQIVTQ---LKEQ--GMNTELY 969 (1384)
Q Consensus 946 --------------------------------------------------~ef~~~-i~~I~~~---L~~~--Gl~~e~~ 969 (1384)
..++.. ...+... +... -|..+.+
T Consensus 166 ~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~f 245 (528)
T COG4108 166 APITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAF 245 (528)
T ss_pred ecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHH
Confidence 000000 0111111 1111 1122222
Q ss_pred hcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh-----c-ccccceEEEEEEEE---cCcceEEEEEEEe
Q 000625 970 YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT-----F-RNELQCTVLEVKVI---EGHGTTIDVVLVN 1040 (1384)
Q Consensus 970 ~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~-----~-~~~~~~~VlEvk~~---~G~G~vi~~iV~~ 1040 (1384)
. -|...|+|..||+++.||..+|+.++.|++.+.....+ + .+.|.+.|+.+..- .++-.++..+|.+
T Consensus 246 l----~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~S 321 (528)
T COG4108 246 L----AGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCS 321 (528)
T ss_pred h----cCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEecc
Confidence 1 26678999999999999999999999998876544221 2 23488888887632 4678899999999
Q ss_pred eeecCCCEEEEccC
Q 000625 1041 GVLHEGDQIVVCGL 1054 (1384)
Q Consensus 1041 G~Lr~GD~Ivv~g~ 1054 (1384)
|.+-.|..+...-+
T Consensus 322 GkferGMkv~h~rt 335 (528)
T COG4108 322 GKFERGMKVTHVRT 335 (528)
T ss_pred ccccCCceeeeeec
Confidence 99999998865543
No 63
>PTZ00416 elongation factor 2; Provisional
Probab=99.86 E-value=4.9e-21 Score=247.98 Aligned_cols=126 Identities=26% Similarity=0.319 Sum_probs=97.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhccccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
...+|| |+|+||+|||||||+++|++..-. ....+|||.+.+...+.|..... ...
T Consensus 16 ~~~irn--i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~------~~~ 87 (836)
T PTZ00416 16 PDQIRN--MSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLE------DGD 87 (836)
T ss_pred ccCcCE--EEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccc------ccc
Confidence 467887 999999999999999999863210 11224555554444443321100 000
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
......|+|||||||.+|...+.++++.+|+||||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 0113459999999999999999999999999999999999999999999999999999999999999996
No 64
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.86 E-value=3.6e-21 Score=219.48 Aligned_cols=125 Identities=30% Similarity=0.315 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|||||||+++|++..-.....+.++ -|.+...+.. .+.+..++.. .+.|+...|+|||||||.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~--~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVH--GGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccccc--CCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH
Confidence 389999999999999999985321111111111 0111111111 1122222211 223445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.++++.+|++|||||+..|+++||..+|+++...++|+|||+||||+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999986
No 65
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.86 E-value=2.8e-22 Score=197.02 Aligned_cols=92 Identities=38% Similarity=0.595 Sum_probs=82.2
Q ss_pred ccCCceEEEeCCcCcHHHHHHHhc---cCCeeeeeEEeecCccccchHHHHHhhhhcccCCcEEEEeCCCCCHHHHHHHH
Q 000625 1137 KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAE 1213 (1384)
Q Consensus 1137 ~~~~gvivkadt~GSlEAl~~~L~---~~~v~i~i~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~ 1213 (1384)
....+|||||||+||||||..+|. +++|+++|+++||||||++||.+|++. +|+||||||++++.+..+|+
T Consensus 14 ~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~------~a~Ii~FNv~~~~~~~~~a~ 87 (108)
T PF11987_consen 14 IKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASAS------NAIIIAFNVKVSPDAKDLAK 87 (108)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHH------C-EEEESSS-B-HHHHHCHH
T ss_pred CceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhh------CCEEEEeeCCCCHHHHHHHH
Confidence 345789999999999999999874 468999999999999999999999984 79999999999999999999
Q ss_pred HhCCeEEEcchHHHHHHHHHH
Q 000625 1214 ELGVKIFIADIIYHLFDQFTA 1234 (1384)
Q Consensus 1214 ~~gV~I~~~~IIY~L~d~~~~ 1234 (1384)
++||+|++|+|||||+|++++
T Consensus 88 ~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 88 KSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp SSTSEEEESTTCCHHHHHHHH
T ss_pred HcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999974
No 66
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=1.1e-21 Score=215.74 Aligned_cols=188 Identities=23% Similarity=0.301 Sum_probs=121.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccc--c-------cCceeEe--eeeeEeccc-ccccchhhccc---ccccCCCCEEE
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEG--E-------AGGITQQ--IGATYFPAE-NIRERTRELKA---NATLKVPGLLV 861 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~g--e-------~gGITq~--iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~~ 861 (1384)
|+|+||+|||||||+++|++..-... . ..+.+.. -+.+.+.+. ..+++..++.. .+.+....|+|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 89999999999999999985321100 0 0000000 001111111 01111111111 12234557999
Q ss_pred EeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 862 IDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 862 IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
||||||..|...+..++..+|++|||||++.|+..++..++.++...++| +|||+||||+.. |. ..
T Consensus 82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~----~~-------- 148 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD-YS----EE-------- 148 (208)
T ss_pred EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc-CC----HH--------
Confidence 99999999998888899999999999999999999999999988888865 677999999862 11 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhccc
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRN 1015 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~ 1015 (1384)
.+......+...+...|+ ..+++|+|||++|.||.+....+.|+..+++++.|+...
T Consensus 149 ------~~~~i~~~~~~~~~~~~~------------~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~ 205 (208)
T cd04166 149 ------VFEEIVADYLAFAAKLGI------------EDITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVP 205 (208)
T ss_pred ------HHHHHHHHHHHHHHHcCC------------CCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCC
Confidence 011111222233333333 235799999999999998776666666677777776543
No 67
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=3.2e-21 Score=214.31 Aligned_cols=184 Identities=23% Similarity=0.254 Sum_probs=122.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc--------------CceeEeeeeeEecccccc---cchhhcc-----ccccc
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA--------------GGITQQIGATYFPAENIR---ERTRELK-----ANATL 854 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~--------------gGITq~iga~~~~~~~i~---~~~~~i~-----~~~~~ 854 (1384)
|+|+||+++|||||+.+|....+..+.. .|+|..+....+.+.... ....... ..+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEK 81 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeee
Confidence 7899999999999999998655543221 344433222222111000 0000000 00122
Q ss_pred CCCCEEEEeCCCCcchhHHHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCch
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~ 932 (1384)
....|+|||||||..|...+.+++. .+|++|||||+.+|++++|.+++.++...++|+|||+||+|++. ...
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~------~~~ 155 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP------ANI 155 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC------HHH
Confidence 3457999999999999999888886 79999999999999999999999999999999999999999862 111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhh-----------hcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELY-----------YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~-----------~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
+...+..+...|...|+..-.+ ..+..++..+|+|++||+||+||+.|+.+|..
T Consensus 156 ---------------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 ---------------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ---------------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1122223333343333321111 12234567789999999999999999888754
No 68
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=3.4e-21 Score=210.95 Aligned_cols=175 Identities=25% Similarity=0.266 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccc-cchhhcc--------cc--------cccC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIR-ERTRELK--------AN--------ATLK 855 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~-~~~~~i~--------~~--------~~~~ 855 (1384)
+|+|+||+|||||||+.+|.+.. ......+|+|..++...+.+.... .++.... .. ....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 59999999999999999998652 233445778888887766553110 0000000 00 0011
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC-CCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
...|+|||||||..|...+.+++..+|++|||||+.+ ++.++|.++|..+...++ |+|||+||+|+.. ...+
T Consensus 82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~------~~~~ 155 (203)
T cd01888 82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK------EEQA 155 (203)
T ss_pred ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC------HHHH
Confidence 2569999999999999999999999999999999998 478899999998887776 6899999999862 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. ..+..+...+..+. ...+++|++||++|+||.+|+.+|...+
T Consensus 156 ~---------------~~~~~i~~~~~~~~------------~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 156 L---------------ENYEQIKKFVKGTI------------AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred H---------------HHHHHHHHHHhccc------------cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1 11112222222111 1246899999999999999999987644
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=1.8e-21 Score=215.70 Aligned_cols=174 Identities=24% Similarity=0.356 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-------------------------------ccCceeEeeeeeEecccccccc
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-------------------------------EAGGITQQIGATYFPAENIRER 844 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-------------------------------e~gGITq~iga~~~~~~~i~~~ 844 (1384)
+|+|+||+|||||||+++|++..-... ..+|+|.++....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--------- 71 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--------- 71 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE---------
Confidence 389999999999999999974321100 0122333332222
Q ss_pred hhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccC-------CCCHHHHHHHHHHHhcC-CceEEEE
Q 000625 845 TRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMH-------GLEPQTIESLNLLKMRN-TEFIVAL 916 (1384)
Q Consensus 845 ~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~-------Gv~~QT~E~l~llk~~~-vP~IVaI 916 (1384)
+.+....|+|||||||.+|...+.++++.+|++|||||+.+ ++.+||.+++.++...+ .|+|||+
T Consensus 72 -------~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 72 -------FETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -------EeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 23445679999999999999999999999999999999998 57789999999888877 5789999
Q ss_pred eeccccc-CcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhH
Q 000625 917 NKVDRLY-GWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL 995 (1384)
Q Consensus 917 NKiDl~~-~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL 995 (1384)
||||++. .|. .. .|...+..+...|...++. ...++||||||++|.||.+-
T Consensus 145 NK~Dl~~~~~~---~~---------------~~~~i~~~l~~~l~~~~~~----------~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 145 NKMDDVTVNWS---EE---------------RYDEIKKELSPFLKKVGYN----------PKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred Ecccccccccc---HH---------------HHHHHHHHHHHHHHHcCCC----------cCCceEEEeecCcCCCCCcC
Confidence 9999962 111 00 1111122233334444432 13579999999999999755
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 000625 996 LLLLVQWTQKTMVEKLTF 1013 (1384)
Q Consensus 996 l~~L~~~~~~~l~e~l~~ 1013 (1384)
-..+.|+....+++.|..
T Consensus 197 ~~~~~w~~g~~l~~~l~~ 214 (219)
T cd01883 197 SENMPWYKGPTLLEALDS 214 (219)
T ss_pred CCCCCCccCCcHHHHHhC
Confidence 444444444556665554
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=8.4e-21 Score=205.57 Aligned_cols=180 Identities=27% Similarity=0.394 Sum_probs=123.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC-------cccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGT-------NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t-------~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
+|+|+||+|||||||+++|+.. .......+|+|.+++...+.+....... .. .........|+|||||||.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLR-EL-INPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccccccc-cc-ccccccCceEEEEECCCcH
Confidence 5999999999999999999862 1122335678887776555443110000 00 0001223569999999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.|.....+++..+|++|+|||+.+|...++.+++.++...++|+|||+||+|+... ..+...+. .+...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~~~~----~~~~~- 148 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE------EERERKIE----KMKKK- 148 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHHHHHHH----HHHHH-
Confidence 99888888889999999999999999999998888887788999999999998621 11111111 01111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
+...+...++ ..+++|++||++|.||.+|+..|...+..+
T Consensus 149 ------l~~~~~~~~~------------~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 149 ------LQKTLEKTRF------------KNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred ------HHHHHHhcCc------------CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1111222111 246899999999999999999998776544
No 71
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=5.4e-21 Score=214.30 Aligned_cols=196 Identities=27% Similarity=0.309 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|+|||||+++|++........|.+. -|.++..+.. .+.+..++.. .+.|....|+|||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~--~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD--KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc--CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 389999999999999999986532211111111 1111111111 1122222211 223445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+.++++.+|++|||||+.+|+..+|..+|+++...++|+|||+||||+. ++++...+...... |...
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~-------~a~~~~~~~~i~~~----~~~~ 147 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA-------GADLEKVYQEIKEK----LSSD 147 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc-------CCCHHHHHHHHHHH----HCCC
Confidence 999999999999999999999999999999999999999999999999986 44555554443322 2110
Q ss_pred -------------------HHHHHHHHHHcCC-chhhhhccc---------------CCCCceeEEeCCCcCCCChhhHH
Q 000625 952 -------------------LVQIVTQLKEQGM-NTELYYKNK---------------DRGETFNIVPTSAISGEGIPDLL 996 (1384)
Q Consensus 952 -------------------i~~I~~~L~~~Gl-~~e~~~~~~---------------d~g~~v~iVpvSA~tGeGI~eLl 996 (1384)
...++..+.+..= -.+.|+... .-+..+|+++.||.++.|+..||
T Consensus 148 ~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll 227 (237)
T cd04168 148 IVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELL 227 (237)
T ss_pred eEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHH
Confidence 0111111111000 001122111 13678999999999999999999
Q ss_pred HHHHHHHH
Q 000625 997 LLLVQWTQ 1004 (1384)
Q Consensus 997 ~~L~~~~~ 1004 (1384)
+.|..+++
T Consensus 228 ~~~~~~~p 235 (237)
T cd04168 228 EGITKLFP 235 (237)
T ss_pred HHHHHhcC
Confidence 99988764
No 72
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.7e-20 Score=195.53 Aligned_cols=157 Identities=33% Similarity=0.463 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+|+|+|++++|||||+++|++.. +.....+++|..++...+.+.. ...++|||||||..|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS---------------GKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC---------------CcEEEEEECCChHHHHH
Confidence 69999999999999999998643 2222335667666554443320 13599999999999998
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC-ceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..++..+|++|||+|+++++.+++.+.+..+...+. |+|+|+||+|+... ..+ ...
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~~---------------~~~ 125 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE------DWL---------------ELV 125 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH------HHH---------------HHH
Confidence 88888999999999999999999999998888877776 99999999998621 000 011
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+...++ ..++++++||++|.||.+|+..|.
T Consensus 126 ~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 126 EEEIRELLAGTFL------------ADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHHHHHHHHhcCc------------CCCcEEEEeCCCCcCHHHHHHHHh
Confidence 1222223322211 236899999999999999998875
No 73
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.84 E-value=7.3e-21 Score=210.86 Aligned_cols=120 Identities=33% Similarity=0.433 Sum_probs=90.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc--c--------------ccccCceeEeeeeeEecccccccchhhcccccccCCCCEE
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNV--Q--------------EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v--~--------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~ 860 (1384)
|+|+||+|||||||+++|+...- . ....+|||.......+.+...... ...-....|+
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~i~ 76 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYLIN 76 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceEEE
Confidence 99999999999999999985321 1 011234444433322222110000 0000134589
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
|||||||.+|...+.++++.+|++|||||+..|+.+||..+|+++...++|+|||+||||+.
T Consensus 77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 77 LIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999999999999999999999999999999999999999998899999999999986
No 74
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1e-20 Score=223.48 Aligned_cols=185 Identities=24% Similarity=0.319 Sum_probs=139.6
Q ss_pred CCchhhhhccccCCCCCcccCCchhhccccCCCCCCCch--hhhhhccccccccCCCccCCCC------ccccccCCCCE
Q 000625 725 PEPLVKKEIKSAIPSPRDAAEKPAVAVKKAIPEQPLKSQ--DAVTRKKEPAAKSKEPEVDATP------KQAEENLRSPI 796 (1384)
Q Consensus 725 ~~~~~~~e~k~~~~~~~e~~~~~~~~~~~~~~~~~~e~e--d~~~qkee~a~k~~~r~~sa~a------~~s~~~~R~pi 796 (1384)
.+.++.+++|.++|++++.++..+++..+.+++|++.++ .+.+..+.....+-.+...+.. ...+..+||
T Consensus 53 ~~~vvLhedK~yypsaeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irn-- 130 (971)
T KOG0468|consen 53 QNAVVLHEDKKYYPSAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRN-- 130 (971)
T ss_pred cceeeeccccccCcccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEE--
Confidence 457899999999999999999999999999999998765 3444444333333222222221 234566777
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccc-----------------cCceeEeeeeeEecccccccchhhcccccccCCCCE
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGE-----------------AGGITQQIGATYFPAENIRERTRELKANATLKVPGL 859 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge-----------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i 859 (1384)
|+++||-.||||+|++.|......... .+|++++....++-... ..-+.+-+
T Consensus 131 V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-----------~~~KS~l~ 199 (971)
T KOG0468|consen 131 VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-----------SKGKSYLM 199 (971)
T ss_pred EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec-----------CcCceeee
Confidence 999999999999999999865543321 12333332222221111 11223569
Q ss_pred EEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 860 LVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 860 ~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+|+|||||.+|+..+.++++.+|+||||||+.+|++.+|...|+++-..++|++||||||||+
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 75
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=5.3e-21 Score=217.26 Aligned_cols=278 Identities=22% Similarity=0.356 Sum_probs=187.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--cc---------ccccCceeEeeeeeEecccc-cccchhhccc---ccccCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQ---------EGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVP 857 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~---------~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~ 857 (1384)
+..+++|+||||+||||+-+.|+... |. .....+-..-+-++++.++. .+....++.. .+.....
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 44569999999999999988876321 10 00001111111222333221 1222222211 1222345
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----C--CHHHHHHHHHHHhcCC-ceEEEEeeccccc-CcccC
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNT-EFIVALNKVDRLY-GWKTC 928 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----v--~~QT~E~l~llk~~~v-P~IVaINKiDl~~-~w~~~ 928 (1384)
+++|+|+|||..|...+..|++++|+++|||.+..| + ..||++|..+++..++ .+||+|||||-+. +|..
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~- 236 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN- 236 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch-
Confidence 799999999999999999999999999999999754 3 3699999999999986 6889999999742 3533
Q ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHH-HHHHHHHHH
Q 000625 929 RNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL-LVQWTQKTM 1007 (1384)
Q Consensus 929 ~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~-L~~~~~~~l 1007 (1384)
.+|.+....+...|...|+|.- .++.++|+|++||.++.+.... ..||....+
T Consensus 237 -----------------eRy~E~~~k~~~fLr~~g~n~~---------~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~f 290 (501)
T KOG0459|consen 237 -----------------ERYEECKEKLQPFLRKLGFNPK---------PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIF 290 (501)
T ss_pred -----------------hhHHHHHHHHHHHHHHhcccCC---------CCceeeecccccccchhhcccccCCcccCCcc
Confidence 3455666677778887887642 5678999999999999988753 334443333
Q ss_pred HHhhh--------cccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceecee
Q 000625 1008 VEKLT--------FRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGT 1079 (1384)
Q Consensus 1008 ~e~l~--------~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~ 1079 (1384)
+..|+ .+.|++|+|.+-+ ...||++.|.|.+|.++.|+.+++.+.... +.|.++
T Consensus 291 l~~ld~l~~~~R~~~GP~~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~~----------------veV~~I 352 (501)
T KOG0459|consen 291 LEYLDELPHLERILNGPIRCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKTN----------------VEVLGI 352 (501)
T ss_pred ceehhccCcccccCCCCEEeehhhhc--cccceEEEEEecccceecCCeEEEccCCcc----------------eEEEEE
Confidence 33222 2457888888754 567799999999999999999998764421 223344
Q ss_pred eechhh---hcccccceeeccccccccCCCceEEeCCCc
Q 000625 1080 YLHHKQ---IKAAQGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1080 ~~~~ke---v~aa~gv~i~~~gL~~~~aG~~l~v~~~e~ 1115 (1384)
|....+ +.++-.++|.+.|++.-.+-.+|+++.+..
T Consensus 353 ~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n 391 (501)
T KOG0459|consen 353 YSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNN 391 (501)
T ss_pred ecccceeeeccCCcceEEEecccchhhccCceEEecCCC
Confidence 433222 334456899999988755555588887764
No 76
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=1.4e-20 Score=200.12 Aligned_cols=161 Identities=31% Similarity=0.392 Sum_probs=111.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccc-------------cccCceeEeeeeeEecccccccchhhcccccccCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQE-------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~~-------------ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
|| |+|+||++||||||+++|++.. +.. ....|+|.+...+.+.+... .....
T Consensus 1 rn--i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-----------~~~~~ 67 (179)
T cd01890 1 RN--FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-----------DGQEY 67 (179)
T ss_pred Cc--EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-----------CCCcE
Confidence 55 9999999999999999998642 110 01123333222222111100 01123
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
.|+|||||||..|..++.+++..+|++|||+|++++...++..+|..+...++|+|||+||+|+.. ......
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-------~~~~~~- 139 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS-------ADPERV- 139 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc-------CCHHHH-
Confidence 488999999999999999999999999999999999999999988888778999999999999852 111000
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+.. ..++ ....+|++||++|.||.+|+.+|...+
T Consensus 140 --------------~~~~~~---~~~~------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 --------------KQQIED---VLGL------------DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred --------------HHHHHH---HhCC------------CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 011111 1122 113589999999999999999987654
No 77
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.84 E-value=2e-20 Score=213.19 Aligned_cols=129 Identities=27% Similarity=0.357 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTP 865 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTP 865 (1384)
+|| |+|+||+|||||||+++|++........|.+.. ..|.+...+.. .+.+..++.. .+.|....|+|||||
T Consensus 2 ~Rn--i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTP 79 (267)
T cd04169 2 RRT--FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTP 79 (267)
T ss_pred ccE--EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence 576 999999999999999999864322222221110 01222222221 1222322222 234566679999999
Q ss_pred CCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 866 GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 866 GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
||.+|...+.++++.+|++|||||++.|+..+|..+|+++...++|+|||+||||+.
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence 999999989999999999999999999999999999999998999999999999985
No 78
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=209.40 Aligned_cols=282 Identities=20% Similarity=0.264 Sum_probs=185.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccc----------------------cc
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKAN----------------------AT 853 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~----------------------~~ 853 (1384)
.|+|+|..|+|||||+..|.......|..+ -.++.+.++++....++..+... ..
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~Gr---ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGR---ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCe---eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 489999999999999999987766554421 12222222222111111111000 01
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccc--cceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCc
Q 000625 854 LKVPGLLVIDTPGHESFTNLRSRGSGL--CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
-...-++|||..||..|......|+.. .++|+|||+|+.|+...|++||.++.++++||+|+++|||++. ..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~------~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD------RQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc------ch
Confidence 112349999999999999888888765 7999999999999999999999999999999999999999973 11
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhc-----------ccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYK-----------NKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~-----------~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.+ ...+..+.+.|...|...-.+.- +.-.+..+|||.+|.++|+|+.-|..+|.
T Consensus 320 ~~---------------~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 320 GL---------------KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred hH---------------HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 11 12233344445554543211100 01135678999999999999965554443
Q ss_pred HHHHH---HHHHhhhcccccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceec
Q 000625 1001 QWTQK---TMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVK 1077 (1384)
Q Consensus 1001 ~~~~~---~l~e~l~~~~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk 1077 (1384)
-+.+. .-...|. ..+..+.|.++|.++..|+++.|++..|.|+.|+.+++++.....+. .++|.
T Consensus 385 ~Lsp~~~~~e~~~L~-q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~------------~itV~ 451 (591)
T KOG1143|consen 385 CLSPAGTAEERIQLV-QLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFE------------KITVG 451 (591)
T ss_pred hcCCcCChHHHHHHh-cCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCcee------------EEEee
Confidence 22211 0111111 23467889999999999999999999999999999998876533322 22333
Q ss_pred eeeec---hhhhcccccceeeccccccccCCCceEEeCCC
Q 000625 1078 GTYLH---HKQIKAAQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1078 ~~~~~---~kev~aa~gv~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
++.-. ..-|.+++...+++...+.+...++|+++.++
T Consensus 452 sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 452 SIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred eeeccccceeeecCccceeeeccCCCccchhcceEEeecC
Confidence 32211 12345666677777666667778888887655
No 79
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=5.4e-20 Score=199.57 Aligned_cols=157 Identities=31% Similarity=0.360 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc--Ccccccc--------------cCceeEeeeeeEecccccccchhhcccccccC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRG--TNVQEGE--------------AGGITQQIGATYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~--t~v~~ge--------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+|+ |+|+||+++|||||+++|++ ..+.... ..|+|.......+ .+.
T Consensus 2 ~r~--i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~----------------~~~ 63 (194)
T cd01891 2 IRN--IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV----------------TYK 63 (194)
T ss_pred ccE--EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE----------------EEC
Confidence 566 99999999999999999986 2222211 1222222211111 123
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...|+|||||||..|..++..+++.+|++|||||+.+++.+++..++..+...++|+|||+||+|+.. ..+..
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~-------~~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD-------ARPEE 136 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC-------CCHHH
Confidence 34699999999999999999999999999999999999989998888888888999999999999862 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLL 996 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl 996 (1384)
. +..+...+...+.... ...+++|++||++|.|+.++-
T Consensus 137 ~---------------~~~~~~~~~~~~~~~~--------~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 137 V---------------VDEVFDLFIELGATEE--------QLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred H---------------HHHHHHHHHHhCCccc--------cCccCEEEeehhccccccccc
Confidence 1 1222223333332211 124689999999999997663
No 80
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.81 E-value=5e-20 Score=179.47 Aligned_cols=108 Identities=65% Similarity=1.017 Sum_probs=103.2
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
++|+|+|++..+|+|+|++++|++|+|+.||+|++|+++||++|+||+||+|.|++++|+++.|.+++++.+++|++|.+
T Consensus 1 ~~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 1 LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred CcEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEeCCCccHHHHHHHH
Q 000625 1097 QGLEHAIAGTGLYVVGPDDDLEDVKEEA 1124 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~v~~~e~~~~~~~~~~ 1124 (1384)
+||+.++||++|+++.++++++.+.+++
T Consensus 81 ~gL~~v~aG~~~~vv~~e~~a~~~~~~~ 108 (110)
T cd03703 81 PDLEKAIAGSPLLVVGPEDEIEELKEEV 108 (110)
T ss_pred CCCccccCCCEEEEECCHHHHHHHHHHH
Confidence 9999999999999999998887776654
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=2.6e-19 Score=190.89 Aligned_cols=169 Identities=35% Similarity=0.445 Sum_probs=118.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccccccc----------------CceeEeeeeeEecccccccchhhcccccccCCCCEE
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEA----------------GGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~----------------gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~ 860 (1384)
|+|+|++|+|||||+++|++........ +++|.+.+...+ .+....++
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 65 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF----------------EWPDRRVN 65 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE----------------eeCCEEEE
Confidence 8999999999999999998766543321 222222221111 12234699
Q ss_pred EEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 861 ~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
||||||+..|...+..++..+|++|+|||+.++...+..+++.++...++|++||+||+|+.. ...+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~------~~~~~------ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG------EEDLE------ 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc------hhcHH------
Confidence 999999999999999999999999999999999999999999999888999999999999962 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...+...++... +-........+++|++||++|.||.+++.+|..++
T Consensus 134 ---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 134 ---------EVLREIKELLGLIGFIST-KEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---------HHHHHHHHHHccccccch-hhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 111222223332221100 00000012357999999999999999999988764
No 82
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=3.9e-19 Score=196.09 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=112.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------------------cCceeEeeeeeEecccccccchhhcccccc
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------------AGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-------------------~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
|+ |+|+||+|||||||+++|+........ ..|+|.......+.+... .
T Consensus 1 rn--v~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~-----------~ 67 (213)
T cd04167 1 RN--VAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS-----------K 67 (213)
T ss_pred Cc--EEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC-----------C
Confidence 55 999999999999999999865433221 122222222221111100 0
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchH
Q 000625 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.....|+|||||||.+|...+.+++..+|++|+|||+.++...++..+++.+...++|+|||+||+|++.-- ...+.
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~---~~l~~ 144 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILE---LKLPP 144 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCccc---ccCCH
Confidence 112358999999999999999999999999999999999999999888888888889999999999986100 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
. .....|...+..+...+...++....++- .-...++..||+.|+++.
T Consensus 145 ~--------~~~~~l~~~i~~~n~~~~~~~~~~~~~~~----p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 145 N--------DAYFKLRHIIDEVNNIIASFSTTLSFLFS----PENGNVCFASSKFGFCFT 192 (213)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHhcCCCceEec----cCCCeEEEEecCCCeEEe
Confidence 0 11223334444454555555543221110 012358889999999984
No 83
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=3.1e-18 Score=191.81 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=138.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-c
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-S 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-~ 869 (1384)
.+|+..|||+|.+++|||||||+|++..+.. +.+.. ++.+.+..++ ......+|.||||||.. .
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI------vS~k~------QTTR~~I~GI---~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI------VSPKP------QTTRNRIRGI---VTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe------ecCCc------chhhhheeEE---EEcCCceEEEEeCCCCCCc
Confidence 4678899999999999999999999887652 21111 1111111111 11223579999999932 1
Q ss_pred ---h----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 870 ---F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 870 ---F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
+ ......++..+|+++||||+++++.+.....+..++..++|+|+++||+|+... ..
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~------~~---------- 131 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP------KT---------- 131 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc------HH----------
Confidence 2 233446678899999999999999999999999999988999999999998731 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH-----------------
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK----------------- 1005 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~----------------- 1005 (1384)
.+..+...+... ..+..+||+||++|.|++.|+..|..+++.
T Consensus 132 --------~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 132 --------VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred --------HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 011222222221 134589999999999999999999887642
Q ss_pred ----HHHHhhh----cccccce--EEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCcee
Q 000625 1006 ----TMVEKLT----FRNELQC--TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIV 1059 (1384)
Q Consensus 1006 ----~l~e~l~----~~~~~~~--~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~ 1059 (1384)
.+++++. ..-|... .|.+....+.....+.+.|+ +=|.++.-+|.|.+|..+
T Consensus 191 ~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~--Ver~sQK~IiIGk~G~~i 252 (298)
T COG1159 191 LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIY--VERESQKGIIIGKNGAMI 252 (298)
T ss_pred HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEE--EecCCccceEECCCcHHH
Confidence 1222221 1222222 22222222344455666555 556777777777776543
No 84
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=8.3e-19 Score=200.21 Aligned_cols=125 Identities=23% Similarity=0.268 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccc-cccchhhccc---ccccCCCCEEEEeCCCCcchh
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAEN-IRERTRELKA---NATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~-i~~~~~~i~~---~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+|+|+||+|+|||||+++|++........+.++ .|.+...+.. .+.+..++.. ...|....|+|||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~--~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVE--DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeec--CCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 389999999999999999986432212222121 1222222211 1112222211 123445679999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.+++..+|++|+|||++.|...+|..+|+++...++|+|||+||||+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC
Confidence 999999999999999999999999999999999999999999999999986
No 85
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=4.5e-18 Score=200.32 Aligned_cols=215 Identities=25% Similarity=0.283 Sum_probs=136.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~- 869 (1384)
.+...|+|+|++|+|||||+++|++..+.. ....+.|.+.....+. +....|+||||||+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~----------------~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT----------------LKDTQVILYDTPGIFEP 113 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE----------------eCCeEEEEEECCCcCCC
Confidence 355679999999999999999999876542 1122233222111111 1224589999999743
Q ss_pred hhH-------HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 870 FTN-------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 870 F~~-------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
|.. .....+..||++|||||+..++...+..++..++..+.|+|||+||+|+.. ..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~-------~~---------- 176 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES-------KY---------- 176 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc-------cc----------
Confidence 221 122347789999999999998888777778888888889999999999852 10
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH------------------
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ------------------ 1004 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~------------------ 1004 (1384)
+..+...+... .....+|||||++|.||.+|+.+|..+++
T Consensus 177 ---------~~~~~~~l~~~-------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 177 ---------LNDIKAFLTEN-------------HPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ---------HHHHHHHHHhc-------------CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 01111222211 12357999999999999999999988753
Q ss_pred ---HHHHHhh----hcccccceEEE-EEEEEcC-cceEEEEEEEeeeecCCCEEEEccCCCceeEEee
Q 000625 1005 ---KTMVEKL----TFRNELQCTVL-EVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1384)
Q Consensus 1005 ---~~l~e~l----~~~~~~~~~Vl-Evk~~~G-~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir 1063 (1384)
+.+.+++ ...-|....|. +.+.... ....|.+.|+ +=+.++.-+|+|.+|..+.+|.
T Consensus 235 ~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~--v~~~sqk~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 235 IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIV--VSRESYKTIILGKNGSKIKEIG 300 (339)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEE--ECCCCceeEEEcCCcHHHHHHH
Confidence 1222222 22233333332 2222222 2234666666 6678888888898876655443
No 86
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=1.1e-17 Score=193.03 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=135.5
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.+|+.+|+|+|++|+|||||+++|++..+... .....|.+.....+. .....|+||||||+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~----------------~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT----------------EDDAQIIFVDTPGIHK 65 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE----------------cCCceEEEEECCCCCC
Confidence 35788999999999999999999998765321 112222211100000 0113599999999654
Q ss_pred h--------hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 870 F--------TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 F--------~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
. ...+..++..+|++|||||+++++......++..+...++|+|||+||+|++.. ..
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~--------- 130 (292)
T PRK00089 66 PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KE--------- 130 (292)
T ss_pred chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HH---------
Confidence 3 234445678899999999999988888888888888778999999999999621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH----------------
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK---------------- 1005 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~---------------- 1005 (1384)
.+..+...+... ....++|++||++|.|+.+|+.+|..+++.
T Consensus 131 ---------~l~~~~~~l~~~-------------~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 131 ---------ELLPLLEELSEL-------------MDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred ---------HHHHHHHHHHhh-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 011111222211 124589999999999999999998876521
Q ss_pred -----HHHH----hhhcccccceEEEEEEEEcCcce-EEEEEEEeeeecCCCEEEEccCCCceeEEee
Q 000625 1006 -----TMVE----KLTFRNELQCTVLEVKVIEGHGT-TIDVVLVNGVLHEGDQIVVCGLQGPIVTTIR 1063 (1384)
Q Consensus 1006 -----~l~e----~l~~~~~~~~~VlEvk~~~G~G~-vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir 1063 (1384)
.+.+ .+...-|....|.-..+... |. .+.+.|+ +=+.++.-+|+|.+|..+.+|+
T Consensus 189 ~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i~--v~~~~~k~i~ig~~g~~i~~i~ 253 (292)
T PRK00089 189 FLAAEIIREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATIY--VERDSQKGIIIGKGGAMLKKIG 253 (292)
T ss_pred HHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEEE--EccCCceeEEEeCCcHHHHHHH
Confidence 1122 12222333322222222222 33 3555555 4567777778888876554443
No 87
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=1e-17 Score=191.60 Aligned_cols=210 Identities=19% Similarity=0.261 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-cccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch----
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF---- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F---- 870 (1384)
.|+|+|++|+|||||+++|++..+.. ...+++|.+.-...+. .....+.||||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~----------------~~~~qii~vDTPG~~~~~~~l 65 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT----------------TGASQIIFIDTPGFHEKKHSL 65 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE----------------cCCcEEEEEECcCCCCCcchH
Confidence 58999999999999999999876542 2334444432111111 11235899999996432
Q ss_pred ----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 871 ----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...+..++..+|++|||||++++...+ ...+..+...+.|+|+|+||+|++. ...+ .
T Consensus 66 ~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~------~~~~----~-------- 126 (270)
T TIGR00436 66 NRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF------KDKL----L-------- 126 (270)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC------HHHH----H--------
Confidence 122345678899999999999876654 4556677778899999999999862 0000 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH---------------------
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK--------------------- 1005 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~--------------------- 1005 (1384)
.....+... ....++||+||++|.||++|+.+|..+++.
T Consensus 127 -------~~~~~~~~~-------------~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e 186 (270)
T TIGR00436 127 -------PLIDKYAIL-------------EDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISE 186 (270)
T ss_pred -------HHHHHHHhh-------------cCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHH
Confidence 001111110 112379999999999999999999876531
Q ss_pred HHHHhh----hcccccceE-EEEEEEEcC-cceEEEEEEEeeeecCCCEEEEccCCCceeEEe
Q 000625 1006 TMVEKL----TFRNELQCT-VLEVKVIEG-HGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062 (1384)
Q Consensus 1006 ~l~e~l----~~~~~~~~~-VlEvk~~~G-~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~I 1062 (1384)
.+.+++ ...-|.... .++.+.... ....+.+.|+ +=|.++.-+|+|.+|..+.+|
T Consensus 187 ~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~--v~~~s~k~iiig~~g~~ik~i 247 (270)
T TIGR00436 187 IIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALIS--VERESQKKIIIGKNGSMIKAI 247 (270)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEE--ECcCCceeEEEcCCcHHHHHH
Confidence 222222 222233222 223233222 2333555555 456777778888887654433
No 88
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=8.5e-18 Score=173.65 Aligned_cols=147 Identities=25% Similarity=0.307 Sum_probs=105.7
Q ss_pred EEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH----
Q 000625 798 CIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN---- 872 (1384)
Q Consensus 798 ~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~---- 872 (1384)
+|||++|+|||||+++|.+.+.. .....++|.......+.+ ....|.|||||||..|..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~DtpG~~~~~~~~~~ 64 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----------------GGREFILIDTGGIEPDDEGISK 64 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----------------CCeEEEEEECCCCCCchhHHHH
Confidence 58999999999999999976532 122334444332222211 223589999999988654
Q ss_pred ----HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 873 ----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.....+..+|++|+|+|+.+++...+..++.+++..++|+|||+||+|+.. ....
T Consensus 65 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-------~~~~-------------- 123 (157)
T cd01894 65 EIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK-------EEDE-------------- 123 (157)
T ss_pred HHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC-------hHHH--------------
Confidence 445667889999999999998888888888888888999999999999862 1100
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+ ..+++++||++|.||.+|+.+|+.+
T Consensus 124 -------~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 124 -------AAEFYSLG--------------FGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -------HHHHHhcC--------------CCCeEEEecccCCCHHHHHHHHHhh
Confidence 11121111 1268999999999999999998753
No 89
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=2.5e-17 Score=173.17 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|+...+.......+...+....+.... ....|+||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEG--------------KTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECC--------------EEEEEEEEeCCCchhhhhhhH
Confidence 489999999999999999998766544333322222211111110 112488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.++..+|++|||+|++++...+.... +..++.. ++|+|||+||+|+.. . . .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-------~-~-----------~------- 121 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP-------S-V-----------T------- 121 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch-------h-H-----------H-------
Confidence 99999999999999988665554443 3444443 689999999999841 0 0 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.... .+... ..++++++||++|.||.+++..|+..+
T Consensus 122 ~~~~-~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKF-NFAEK--------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHH-HHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 11110 125899999999999999999987654
No 90
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=4.2e-17 Score=198.14 Aligned_cols=162 Identities=22% Similarity=0.293 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
..+.|+|+|++++|||||+++|++... ......|+|.+.....+.+. ...|+||||||+..+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN----------------GKKYLLIDTAGIRRKG 234 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC----------------CcEEEEEECCCccccc
Confidence 446799999999999999999997653 23445666655433333221 2359999999975443
Q ss_pred ----------HHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 872 ----------NLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ----------~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
.++ .+++..||++|||||+++|+..++...+.++...++|+|||+||+|++.. .. .
T Consensus 235 ~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~---~---- 301 (429)
T TIGR03594 235 KVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EK---T---- 301 (429)
T ss_pred cchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HH---H----
Confidence 222 34678899999999999999999999999999999999999999998610 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
+..+...+... +. +-..+++|+|||++|.||.+|+.+|..++.
T Consensus 302 -----------~~~~~~~~~~~-~~---------~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 302 -----------REEFKKELRRK-LP---------FLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred -----------HHHHHHHHHHh-cc---------cCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111112111 00 013479999999999999999999887664
No 91
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.74 E-value=6.9e-18 Score=176.54 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH---
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN--- 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~--- 872 (1384)
.|+++|.+++|||||+++|++.....+..+|+|.......+.+.. ..+.||||||..++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~----------------~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD----------------QQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT----------------EEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC----------------ceEEEEECCCcccCCCCCc
Confidence 599999999999999999999998888899999876655554332 3499999999655421
Q ss_pred ---HHHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 ---LRSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ---~r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
....+ ...+|++|+|||+++ ..+....+.++..+++|+|+|+||||+.... ...+
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~----g~~i-------------- 125 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK----GIEI-------------- 125 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT----TEEE--------------
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc----CCEE--------------
Confidence 12223 357999999999987 3566677788888999999999999985210 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
....+...| .+|+||+||++|.|+.+|+..|
T Consensus 126 ---d~~~Ls~~L------------------g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 126 ---DAEKLSERL------------------GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ----HHHHHHHH------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ---CHHHHHHHh------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence 001111111 2699999999999999998764
No 92
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=3.3e-17 Score=175.54 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-c-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-Q-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe- 868 (1384)
.+.+.|+|||++|+|||||+++|++..+ . .....|.|+++..+.+ + ..|.||||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-----------------~~~~liDtpG~~~ 76 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-----------------DGFRLVDLPGYGY 76 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-----------------CcEEEEeCCCCcc
Confidence 4667899999999999999999998752 1 2234445555432211 1 248999999952
Q ss_pred ---------chhHHHHhcc---cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHH
Q 000625 869 ---------SFTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 869 ---------~F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
.|..++..++ ..+|++|+|||+++++..++..+++++...++|+|||+||+|+... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~------~~~--- 147 (179)
T TIGR03598 77 AKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK------SEL--- 147 (179)
T ss_pred ccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH------HHH---
Confidence 3444443333 3568999999999999999999999998899999999999998621 111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
...+..+...|...+ ..+++|+|||++|+||.
T Consensus 148 ------------~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 148 ------------NKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred ------------HHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence 111223333333222 23589999999999984
No 93
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.73 E-value=4.3e-17 Score=171.40 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=96.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh---
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~--- 871 (1384)
|+|+|+|++++|||||+++|++..+.....++.|..+....+.+ ....|+||||||+..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY----------------KYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc----------------CceEEEEEECCCcCCccccC
Confidence 67999999999999999999987654333333333322222211 12359999999984321
Q ss_pred ------HHHHhcccccceeEEEeeccCCCC---HHHHHHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 872 ------NLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ------~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
..+......+|++|||+|+++... ......+..++.. ++|+|||+||+|+... ..+
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~------~~~------- 131 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF------EDL------- 131 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch------hhH-------
Confidence 011111234689999999987432 2223455556554 7999999999998621 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ...+... ..+++++|||++|.||.+|+.+|...
T Consensus 132 ------------~~-~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 132 ------------SE-IEEEEEL--------------EGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred ------------HH-HHHhhhh--------------ccCceEEEEecccCCHHHHHHHHHHH
Confidence 00 1111111 23589999999999999999988754
No 94
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=2.1e-17 Score=173.73 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=104.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.|+|||||+.+|++..+.......++.++....+.+... ...++|||||||..|..++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK--------------RVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHH
Confidence 45999999999999999999877655433333322222222222110 0248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ----REVL------------------ 127 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cccC------------------
Confidence 9999999999999999886544443333 3232 246899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+....... +...++++||++|.||.+++.+|...
T Consensus 128 -~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 128 -FEEACTLAEKN--------------GMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -HHHHHHHHHHc--------------CCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 00111111111 12478999999999999999988753
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=8.4e-17 Score=195.91 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=115.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.+.|+|+|++++|||||+++|++.. +..+..+|+|.+.....+.+. ...|+||||||+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~----------------~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD----------------GQKYTLIDTAGIRRKGK 236 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC----------------CeeEEEEECCCCCCCcc
Confidence 4679999999999999999999765 334555677765443333222 23589999999643
Q ss_pred -------hhHHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 870 -------FTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 -------F~~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
|..++ .+++..||++|||||++.|+..|+...+.++...++|+|||+||+|+.. .....
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~-------~~~~~------ 303 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKTME------ 303 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC-------HHHHH------
Confidence 23222 3578899999999999999999999999999999999999999999862 10000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+ ...+...|.. -..+|++++||++|.||.+|+..+..++.
T Consensus 304 -----~~---~~~~~~~l~~--------------~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 304 -----EF---KKELRRRLPF--------------LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred -----HH---HHHHHHhccc--------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 01 1111111111 13479999999999999999998876653
No 96
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.73 E-value=1.8e-17 Score=174.10 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=97.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc-cc-----ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EG-----EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~-~g-----e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
|+|||++|+|||||+++|.+.... .+ ..+++...++. +. +....+.|||||||..|
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~----------------~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IE----------------VGNARLKFWDLGGQESL 63 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EE----------------ECCEEEEEEECCCChhh
Confidence 899999999999999999753221 00 01111111111 11 12235899999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
..++...+..+|++|||||+.+.-. ......+..+. ..++|+||++||+|+...+ ..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------~~------------ 125 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL------SV------------ 125 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC------CH------------
Confidence 9999999999999999999976421 12222333222 2479999999999985311 00
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+.... . . .....++++++||++|.||.+++.+|.
T Consensus 126 -------~~~~~~~~~~~-~-~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 126 -------EEIKEVFQDKA-E-E------IGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred -------HHHHHHhcccc-c-c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 01111111100 0 0 001346999999999999999999885
No 97
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.72 E-value=5.8e-17 Score=169.56 Aligned_cols=160 Identities=19% Similarity=0.278 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
++.|+|+|++|+|||||+++|++..+. .+..+++|.......+.+ ....++||||||+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~iiDtpG~~~~~~ 65 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY----------------DGKKYTLIDTAGIRRKGK 65 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE----------------CCeeEEEEECCCCccccc
Confidence 467999999999999999999876532 222333333322222211 2235899999997543
Q ss_pred --------hHH-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 871 --------TNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 871 --------~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
..+ ....+..+|++|+|+|+.++...+....+..+...+.|+||++||+|+.... ..
T Consensus 66 ~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~--------- 131 (174)
T cd01895 66 VEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SK--------- 131 (174)
T ss_pred hhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HH---------
Confidence 211 2345678999999999999988888888888888899999999999986310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+... +.. ...+++|++||++|.||..++..+..+
T Consensus 132 ---------~~~~~~~~~~~~-~~~---------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 132 ---------TMKEFKKEIRRK-LPF---------LDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ---------HHHHHHHHHHhh-ccc---------ccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 011111112111 100 123689999999999999999887643
No 98
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=5.3e-17 Score=169.70 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++..+....+.... ....|.|||||||..|..++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG--------------KRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC--------------EEEEEEEEECcchHHHHHhHH
Confidence 489999999999999999998776555444444443333332221 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-H---HHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-N---LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~---llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|++++...+....| . .+...++|+|||+||+|+... +..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~------------------- 124 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ----REVT------------------- 124 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh----ccCC-------------------
Confidence 999999999999999986555544444 2 233357899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+... + ++++++||++|.||.+++.+|+.
T Consensus 125 ~~~~~~~~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 125 FLEASRFAQEN-------------G--LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHHc-------------C--CEEEEEECCCCCCHHHHHHHHHH
Confidence 01111112111 1 58999999999999999998864
No 99
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=4.3e-17 Score=173.22 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.+.|+|+|++++|||||+++|.+..+.. ++.++|.....+ .+....+.||||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~--------------~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTL--------------EYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEE--------------EECCEEEEEEECCCCHHHHH
Confidence 44679999999999999999998764321 122222111100 01123489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCH-HHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEP-QTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|||+|+++.-.. .....+..+ ...++|+|||+||+|+... ..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~--------------- 132 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA------LS--------------- 132 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC------CC---------------
Confidence 999999999999999999875221 112222222 2257899999999998621 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+....+. ...+++|+|||++|.||.+++.+|+
T Consensus 133 ----~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 133 ----EEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ----HHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 01111112111110 2357999999999999999998875
No 100
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-17 Score=200.01 Aligned_cols=117 Identities=34% Similarity=0.497 Sum_probs=95.2
Q ss_pred ccccCCCCEEEEEcCCCCCHHHHHHHHHcCccc----------------ccccCceeEeeeeeEecccccccchhhcccc
Q 000625 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ----------------EGEAGGITQQIGATYFPAENIRERTRELKAN 851 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~----------------~ge~gGITq~iga~~~~~~~i~~~~~~i~~~ 851 (1384)
....+|| |||+.|||||||||.+.|+..+.. +..++|||...++...-
T Consensus 5 ~~~~irn--~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-------------- 68 (887)
T KOG0467|consen 5 GSEGIRN--ICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-------------- 68 (887)
T ss_pred CCCceeE--EEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc--------------
Confidence 3467888 999999999999999999855421 11224444443333211
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.|+|||+|||.+|+..+..+++.||+++++||+..|+.+||...++++-..+...|+||||||++
T Consensus 69 --~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 69 --HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred --cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 133569999999999999999999999999999999999999999999999999999999999999975
No 101
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=5.5e-17 Score=169.18 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....++++.++....+.+.... ..|+||||||+..|..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~D~~G~~~~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT--------------VRLQLWDTAGQERFRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE--------------EEEEEEECCCcHHHHHHHH
Confidence 48999999999999999999888876666666666544443332110 1389999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH-Hhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-KMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+....| ..+ ... ++|+|||+||+|+... +....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~----~~~~~------------------ 125 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK----RQVST------------------ 125 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc----CccCH------------------
Confidence 999999999999999886544444433 322 233 4899999999998411 10000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...... ..++++++||.+|.||.+|+.+|...
T Consensus 126 -~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 126 -EEGEKKAKE---------------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred -HHHHHHHHH---------------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 001111111 12589999999999999999998753
No 102
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=6.4e-17 Score=169.02 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=101.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.....+.++..+ ...+.+. .....+.|||||||..|..++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--------------~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID--------------GQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC--------------CEEEEEEEEECCCCcchhHHH
Confidence 3599999999999999999987665433222222111 1111111 011248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...+..+|++|||+|+++....+.... +..+ ...++|+|||+||+|+...+ ...
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~----~~~----------------- 126 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR----KVS----------------- 126 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc----eec-----------------
Confidence 999999999999999987433222222 1222 22478999999999986311 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......+... .++++++||++|.||.+++..|+..+
T Consensus 127 --~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 127 --REEGQELARKL---------------KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred --HHHHHHHHHHc---------------CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00111111111 24889999999999999999987654
No 103
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.71 E-value=7.2e-17 Score=169.94 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.......++.++....+.+.. ....|+|||||||..|..++.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD--------------KLVTLQIWDTAGQERFQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC--------------EEEEEEEEeCCChHHHHhHHH
Confidence 489999999999999999998876544433333222211121111 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH--HHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+++.||++|+|+|+++....+....|. ++.. .++|+|||+||+|+... .....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~------------- 129 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK-----RQVST------------- 129 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc-----cccCH-------------
Confidence 9999999999999998754333333331 1221 26899999999999620 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+... +.++++++||++|.||..++.+|...+.
T Consensus 130 -----~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 130 -----KKAQQWCQSN--------------GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred -----HHHHHHHHHc--------------CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111112221 2368999999999999999999876543
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=7.4e-17 Score=169.76 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.|+|||||+++|....+..+...+++.+.....+.+... ...+.|||||||..|..+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE--------------KIKLQIWDTAGQERFRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHH
Confidence 356999999999999999999876665444333333322222222110 013789999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+...+..+|++|+|+|+.++...+....| ..+...++|+|+|+||+|+... ..+..
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~------~~i~~-------------- 132 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER------REVSQ-------------- 132 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cccCH--------------
Confidence 99999999999999999876444333333 3333346999999999998521 11100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+...+... ..++++++||++|.|+.+++..|...
T Consensus 133 ----~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 133 ----QRAEEFSDA--------------QDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ----HHHHHHHHH--------------cCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 011112111 12589999999999999999998754
No 105
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.71 E-value=8.2e-17 Score=168.03 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|++..+.....++++.++....+.+.. ......|+||||||+..|..++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ------------SDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC------------CCCEEEEEEeeCCchHHHHHhHH
Confidence 489999999999999999998766554444444433222111110 00012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHH-HH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLNL-LK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~l-lk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
..++.+|++|||+|+++.-..+....|.. +. ..++|+|||+||+|+... ..+. .
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------~~v~-----------------~ 126 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ------AVIT-----------------N 126 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc------cCCC-----------------H
Confidence 99999999999999987544444433332 22 237999999999998621 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+....... .++++++||++|.||.+|+.+|..
T Consensus 127 ~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 127 EEAEALAKRL---------------QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 0111111111 148999999999999999988864
No 106
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.71 E-value=1.8e-16 Score=165.48 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++.++....+.+... ...|.||||||+..|..++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~D~~G~~~~~~~~~ 67 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK--------------RVKLQIWDTAGQERFRSITS 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCChHHHHHHHH
Confidence 4899999999999999999988776555555555444333332210 02488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..||++|||+|+++....+....| ..+.. .++|+|||+||+|+...+. .+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----~~~------------------ 125 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ----VSR------------------ 125 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC----CCH------------------
Confidence 999999999999999885444444333 22222 4689999999999862110 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+....... .++++++||.+|.||.+++.+|...+
T Consensus 126 -~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 126 -EEAEAFAEEH---------------GLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -HHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24799999999999999999988654
No 107
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=5.9e-17 Score=167.97 Aligned_cols=147 Identities=25% Similarity=0.293 Sum_probs=102.2
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH------
Q 000625 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN------ 872 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~------ 872 (1384)
|||++|+|||||+++|++..+..+..+|+|.+.....+.+. ...+.||||||+..|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG----------------GKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC----------------CeEEEEEECCCccccCCCChhHH
Confidence 58999999999999999876555556666665543333322 13589999999988764
Q ss_pred HHHhccc--ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 873 LRSRGSG--LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 873 ~r~rg~~--~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
++...+. .+|++|||+|+.+. .+....+..+...++|+|||+||+|+... ..+..
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~------~~~~~--------------- 121 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK------RGIKI--------------- 121 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc------ccchh---------------
Confidence 3444454 89999999999873 33344556667788999999999998631 10000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+ ..+... -.++++++||++|.|+..|+.+|..+
T Consensus 122 ---~~-~~~~~~--------------~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 122 ---DL-DKLSEL--------------LGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---hH-HHHHHh--------------hCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 00 011110 01489999999999999999888754
No 108
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.71 E-value=1e-16 Score=167.38 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....+.++.+++...+..... ...|+||||||+..|..++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK--------------EVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe--------------EEEEEEEECCccHHHHHHHH
Confidence 4899999999999999999988766555455544443333322210 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh--------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..+..+|++|||+|+++....+....| ..+.. .++|+|+|+||+|+.... ...
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~-------------- 129 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR----AVS-------------- 129 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc----ccC--------------
Confidence 999999999999999875433333333 22211 358999999999985210 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.......+... .++++++||++|.||.+++.+|+..
T Consensus 130 -----~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 130 -----EDEGRLWAESK---------------GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -----HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 00011111111 1579999999999999999998754
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=1.1e-16 Score=172.21 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
+..|+|||+.++|||||+++|++..+... .+.++..+....+.+. ......|.||||||+..|..+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~-------------~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLG-------------NSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeecc-------------CCCceEEEEEECCCcHhHHHH
Confidence 35699999999999999999987655422 2211111111111110 011234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHH-----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...+..||++|||||+++.-...... ++......++|+|||+||+|+...+ +.
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------~~--------------- 127 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL------SV--------------- 127 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC------CH---------------
Confidence 998999999999999998742222111 1222233579999999999985210 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+....+. ....+++++|||++|.||.+|+.+|...+.
T Consensus 128 ----~~~~~~~~~~~~~---------~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 128 ----SEVEKLLALHELS---------ASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ----HHHHHHhCccccC---------CCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 0111111101110 012367999999999999999999886664
No 110
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=2.2e-16 Score=172.33 Aligned_cols=160 Identities=19% Similarity=0.121 Sum_probs=107.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||.+++|||||+.+|++..+.....+++..++....+.+.. .....|.||||||++.|..++.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-------------~~~~~l~l~Dt~G~~~~~~~~~ 68 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-------------NTVVRLQLWDIAGQERFGGMTR 68 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-------------CCEEEEEEEECCCchhhhhhHH
Confidence 489999999999999999998776554444444333222222210 0012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH-------hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
..+..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ ...
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~----~~~--------------- 129 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL----AKD--------------- 129 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc----ccC---------------
Confidence 999999999999999874333333222 1121 2468999999999985210 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+...+...+ .++++++||++|.||.+++.+|+..+..
T Consensus 130 ----~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 130 ----GEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ----HHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 011222222222 2479999999999999999999876643
No 111
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.70 E-value=1.3e-16 Score=165.59 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+|+|||||+++|++..+.....+.+.... ...+.... ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~l~~ 67 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG--------------ETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECC--------------EEEEEEEEECCCCcchHHHHH
Confidence 589999999999999999998766443333222111 11111110 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|+|+|+++....+.... +..+. ..++|+|||+||+|+... ...
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----~~~------------------ 124 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-----TVS------------------ 124 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-----eec------------------
Confidence 99999999999999987433333222 22222 247899999999998620 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+....... .++++++||++|.||.+++.+|+..
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 125 -SRQGQDLAKSY---------------GIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred -HHHHHHHHHHh---------------CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 00111111111 2479999999999999999988753
No 112
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=2.3e-16 Score=193.90 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=114.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH---- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH---- 867 (1384)
+.+.|+|+|++++|||||+++|++..+ ......|+|.+.....+.+. ...+.||||||+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~----------------~~~~~l~DTaG~~~~~ 273 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG----------------GKTWRFVDTAGLRRRV 273 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC----------------CEEEEEEECCCccccc
Confidence 456799999999999999999998754 23445566655432222221 234789999994
Q ss_pred ------cchhHHHH-hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 868 ------ESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 868 ------e~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
+.|..++. ..+..+|++|||+|+++++..+....+.++...++|+|||+||+|++.. .....+
T Consensus 274 ~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~-------~~~~~~--- 343 (472)
T PRK03003 274 KQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE-------DRRYYL--- 343 (472)
T ss_pred cccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh-------hHHHHH---
Confidence 44555543 4578899999999999999999999998888889999999999999621 100000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+...+.. -..+++++|||++|.||.+|+..|..++.
T Consensus 344 -----------~~~i~~~l~~--------------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 344 -----------EREIDRELAQ--------------VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred -----------HHHHHHhccc--------------CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111111111 12368999999999999999999987664
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=1.1e-16 Score=167.27 Aligned_cols=151 Identities=26% Similarity=0.254 Sum_probs=98.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+.+|+...+... .+++...+ ..+. +....+.||||||+..|..++..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVT----------------YKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEE----------------ECCEEEEEEECCCCHHHHHHHHH
Confidence 89999999999999999976554321 11111111 1111 11234899999999999999999
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEP-QTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||||+++.... .+...|. ++.. .++|+|||+||+|+...+ ..
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------~~------------------ 118 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------SE------------------ 118 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------CH------------------
Confidence 99999999999999874322 1223333 3332 368999999999986211 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+ ++.. .....+++++|||++|.||.+++.+|+.
T Consensus 119 -~~i~~~~---~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 -AEISEKL---GLSE-------LKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -HHHHHHh---Cccc-------cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0111111 1110 0012358999999999999999998863
No 114
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.70 E-value=3e-16 Score=174.09 Aligned_cols=201 Identities=18% Similarity=0.189 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|+...+.. ..+ .+|..+.... +....|.||||||+..|..++.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~--------------~~~~~l~iwDt~G~e~~~~l~~ 62 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQ--------------WGPYNISIWDTAGREQFHGLGS 62 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEE--------------eeEEEEEEEeCCCcccchhhHH
Confidence 48999999999999999999877653 122 2222221110 1112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchH-HHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPI-VKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~-~~~l~~q~~~v~~ef~~ 950 (1384)
.+++.+|++|||+|+++......+. .|..+.. .++|+|||+||+|+...|.......- ...+.... ... .
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~---~r~--v 137 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPED---QRQ--V 137 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccc---ccc--C
Confidence 9999999999999998854333333 2332322 35899999999999753321100000 00000000 000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceEE
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTV 1021 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~V 1021 (1384)
.......+....+- ...+|.+......++|++|||+||.||.++|..|+..+...+..........+++|
T Consensus 138 ~~~e~~~~a~~~~~-~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
T cd04126 138 TLEDAKAFYKRINK-YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV 207 (220)
T ss_pred CHHHHHHHHHHhCc-cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 00111111111110 01122222222347899999999999999999998877665555433333334443
No 115
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=1.7e-16 Score=173.99 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
-|+|||..++|||||+.+|.+..+......+++..+....+.+... ...|+||||||++.|..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~--------------~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK--------------KIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE--------------EEEEEEEeCCCchhhHHHHH
Confidence 4899999999999999999988776555455444433222322210 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+....|. .+.. .++|+|||.||+|+...+ .+.
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~------~v~----------------- 124 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR------EIS----------------- 124 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc------ccC-----------------
Confidence 9999999999999999865555544432 3332 358999999999985211 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......+... + ..+.++.|||++|.||.++|.+|+..+
T Consensus 125 -~~~~~~~a~~-~------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 125 -RQQGEKFAQQ-I------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred -HHHHHHHHHh-c------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0001111111 0 124799999999999999999987654
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=1.1e-16 Score=166.76 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=98.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+.+|.+...... .++..+|.....+. +....++||||||+..|..++..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~--------------~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFE--------------KGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEE--------------ECCEEEEEEECCCCHhhHHHHHH
Confidence 89999999999999999987542111 11222221111010 11234899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHH-H-----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++..+|++|||+|++++.... ....+..+ . ..++|+|||+||+|+... ...
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~------~~~---------------- 122 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA------LTA---------------- 122 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC------CCH----------------
Confidence 999999999999998864322 12222222 1 247999999999998521 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ ++.. . ....+++++|||++|.||.+++.+|.
T Consensus 123 ---~~~~~~l---~~~~--~-----~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 123 ---VKITQLL---GLEN--I-----KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ---HHHHHHh---CCcc--c-----cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 0111111 1100 0 01235799999999999999999875
No 117
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=170.77 Aligned_cols=162 Identities=16% Similarity=0.080 Sum_probs=106.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|.+..+.....+.+...+.. .+..+ .....+.||||||+..|..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~--------------~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVID--------------EETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEEC--------------CEEEEEEEEeCCCCccchhh
Confidence 3569999999999999999999876643322222211110 00011 01124889999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+..++..+|++|||+|+++....+....| ..+. ..++|+|||+||+|+...+ .+..
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~------~i~~------------- 130 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER------QVST------------- 130 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------ccCH-------------
Confidence 99999999999999999875432223222 2222 2378999999999985211 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~ 1008 (1384)
.......... .+++++|||++|.||.+++.+|+..+...+.
T Consensus 131 ----~~~~~~~~~~---------------~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 131 ----GEGQELAKSF---------------GIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred ----HHHHHHHHHh---------------CCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0000111111 1489999999999999999999877655433
No 118
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=2e-16 Score=165.61 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++|+|||||+++|.+..+.....++++..+ ...+.... ....|.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDG--------------EVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECC--------------EEEEEEEEECCCcccchHHHH
Confidence 489999999999999999997766543333222111 11111100 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..+|++|||+|+++.-..+....| ..+ ...++|+|||+||+|+...+ .+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~------~~~---------------- 124 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER------VVS---------------- 124 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc------eEc----------------
Confidence 999999999999999874332222222 112 22368999999999986311 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++++||++|.||.+|+.+|+..+
T Consensus 125 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 125 -TEEGKELARQW---------------GCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred -HHHHHHHHHHc---------------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00011111111 15899999999999999999987654
No 119
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=1.8e-16 Score=167.61 Aligned_cols=157 Identities=21% Similarity=0.157 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.......++..+....+..... ...++||||||+..|..++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK--------------QIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987765444333333333222222110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.+.+..+|++|||+|+++....+....| ..++. .++|+|||+||+|+... +..+.
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~----~~~~~----------------- 129 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR----REVSY----------------- 129 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCCH-----------------
Confidence 9999999999999999874443333333 23333 36899999999998621 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.||.+++.+|...+
T Consensus 130 --~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 130 --EEGEAFAKEH---------------GLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred --HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0111111111 24789999999999999998887554
No 120
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=9.8e-17 Score=188.58 Aligned_cols=152 Identities=24% Similarity=0.380 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
|+|+|+|.+++|||||+|+|++.... ....+|+|.+--.... .|....|.+|||+|...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~----------------~~~~~~f~lIDTgGl~~~~~~ 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDA----------------EWLGREFILIDTGGLDDGDED 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCcccee----------------EEcCceEEEEECCCCCcCCch
Confidence 89999999999999999999988754 3445666665322222 23345699999999764
Q ss_pred -hhH----HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 870 -FTN----LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -F~~----~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|.. ....++..||++|||||+..|++++..+...+|+..+.|+|+|+||+|-..
T Consensus 68 ~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~--------------------- 126 (444)
T COG1160 68 ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK--------------------- 126 (444)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch---------------------
Confidence 322 234667889999999999999999999999999988899999999999641
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......|..+||. .++||||.+|.||.+|++.++.+++
T Consensus 127 -------~e~~~~efyslG~g--------------~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 -------AEELAYEFYSLGFG--------------EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -------hhhhHHHHHhcCCC--------------CceEeehhhccCHHHHHHHHHhhcC
Confidence 11233456666652 6899999999999999999988764
No 121
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=2e-16 Score=167.07 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=105.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|.+++|||||+++|.+..+.....++++.+.....+.+... ...|.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK--------------KIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE--------------EEEEEEEeCCchHHHHHHH
Confidence 46999999999999999999987766544343333222212211110 0248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..+|++|||+|++++...+....| ..+.. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~----~~~~------------------ 127 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK----RVVS------------------ 127 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc----cCCC------------------
Confidence 9999999999999999875443333332 22222 46899999999999621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...+... .+++++|||++|.||.+++.+|+..+
T Consensus 128 -~~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 128 -KEEGEALADEY---------------GIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 24899999999999999999987644
No 122
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=1.9e-16 Score=166.69 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCC-CCEEEEeCCCCcc---
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKV-PGLLVIDTPGHES--- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~-~~i~~IDTPGHe~--- 869 (1384)
.|+|||++|||||||+++|.+.....+...+.|. ++|... + .. ..|+||||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~--~----------------~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR--V----------------DDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE--c----------------CCCCeEEEEecCcccCccc
Confidence 3899999999999999999876543232223332 222221 1 11 2599999999742
Q ss_pred ----hhHHHHhcccccceeEEEeeccCC-CCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHH
Q 000625 870 ----FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+.....+.+..||++|||+|++++ -..+....| ..+.. .++|+|||+||+|+... ..+.
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~---- 133 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE------EELF---- 133 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc------hhhH----
Confidence 233334456679999999999986 333333333 33332 36899999999998621 1110
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+.... ..++++++||++|.||.+|+.+|..+
T Consensus 134 ---------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 134 ---------------ELLKELLKEL-------------WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred ---------------HHHHHHHhhC-------------CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 0111111110 13579999999999999999998754
No 123
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=2.1e-16 Score=166.13 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|.+..+......+++.++....+.+... ...+.||||||+..|..++.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK--------------TIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE--------------EEEEEEEECCCcHhHHHHHH
Confidence 4899999999999999999987765544444443322222221110 12488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-...... ++..+.. .++|+|||+||+|+... +....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~----~~~~~------------------ 127 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK----RVVDY------------------ 127 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc----cCCCH------------------
Confidence 9999999999999998743222222 2222322 35899999999998521 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...... ..++++++||++|.||.+++..|+..+
T Consensus 128 -~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 128 -SEAQEFADE---------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -HHHHHHHHH---------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 001111111 125899999999999999999987644
No 124
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.69 E-value=2.5e-16 Score=165.98 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|.+..+.....+.+..++....+.... ....+.||||||+..|..++.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 69 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNG--------------QKIKLQIWDTAGQERFRAVTR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECC--------------EEEEEEEEECCCcHHHHHHHH
Confidence 489999999999999999997766544333332222221111111 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~----~~~~------------------- 126 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ----RDVT------------------- 126 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCcC-------------------
Confidence 999999999999999885444444333 2222 245899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+... .++++++||++|.||.+++..|+..
T Consensus 127 ~~~~~~~~~~~---------------~~~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 127 YEEAKQFADEN---------------GLLFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 00111111111 2589999999999999999888654
No 125
>PRK04213 GTP-binding protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=171.79 Aligned_cols=158 Identities=25% Similarity=0.351 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----- 867 (1384)
+.+.|+|+|++++|||||+++|++..+..+..+|+|..... +.+ ..++||||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDW------------------GDFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eee------------------cceEEEeCCccccccc
Confidence 45779999999999999999999877655555565544221 111 14899999995
Q ss_pred ------cchhHHHH----hcccccceeEEEeeccCC-----------CCHHHHHHHHHHHhcCCceEEEEeecccccCcc
Q 000625 868 ------ESFTNLRS----RGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKMRNTEFIVALNKVDRLYGWK 926 (1384)
Q Consensus 868 ------e~F~~~r~----rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~ 926 (1384)
+.|..++. +++..++++|+|+|++.. ..+++.+++..+...++|+|||+||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-- 145 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN-- 145 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc--
Confidence 33444332 245567899999998642 2345677788888889999999999998621
Q ss_pred cCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 927 TCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 927 ~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. .. ....+... .++.. .|. .+ ..++|+|||++| ||.+|+.+|...+
T Consensus 146 -----~-~~---------------~~~~~~~~---~~~~~--~~~--~~--~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 146 -----R-DE---------------VLDEIAER---LGLYP--PWR--QW--QDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----H-HH---------------HHHHHHHH---hcCCc--ccc--cc--CCcEEEEecccC-CHHHHHHHHHHhh
Confidence 0 00 01111111 12210 010 01 247999999999 9999999987654
No 126
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=1.8e-16 Score=194.86 Aligned_cols=152 Identities=26% Similarity=0.343 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.|+|+|||++++|||||+++|++..+. .....|+|.+.-...+.+ ....|+||||||+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW----------------NGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE----------------CCcEEEEEeCCCcCCcch
Confidence 377999999999999999999986542 345567776543333222 223489999999763
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|...+..++..||++|||||+++++......++.+++..++|+|+|+||+|+... ..
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~-----~~------------- 163 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG-----EA------------- 163 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc-----ch-------------
Confidence 4455666788999999999999998888888888888889999999999998520 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
. ...+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 164 ---------~-~~~~~~~g~-----------~---~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 164 ---------D-AAALWSLGL-----------G---EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred ---------h-hHHHHhcCC-----------C---CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 0 011222232 1 246999999999999999987654
No 127
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=2.3e-16 Score=167.04 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|+...+.....+.+...+....+.... ....+.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR--------------GKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCCChhhccccH
Confidence 489999999999999999987665443333333333222222110 112489999999999999988
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
..+..+|++|||+|++++...+....| ..+... ++|+|||+||+|+.. +... .
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-----~~~~-~------------------ 123 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-----RKVK-A------------------ 123 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-----ccCC-H------------------
Confidence 899999999999999886554444333 333222 699999999999851 0000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
... .+... ..+++++|||++|.||.+++.+|+..+
T Consensus 124 -~~~-~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 124 -KQI-TFHRK--------------KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred -HHH-HHHHH--------------cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 000 11111 235899999999999999999997544
No 128
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.69 E-value=5.5e-17 Score=149.78 Aligned_cols=80 Identities=48% Similarity=0.747 Sum_probs=69.6
Q ss_pred ecceeeeecccccccCCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000625 1252 VFPCVLKILPNCVFNKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1252 v~p~~~~i~~~~vf~~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
+.||.|+|+|+|+||+++ +|+| +|+.|+|++|+|| +| ..+|+|.||++++++|++|++|++|||+|+|.
T Consensus 2 ~~p~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l---~G--~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~---- 70 (81)
T PF14578_consen 2 VRPGKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL---DG--RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGP---- 70 (81)
T ss_dssp S-SEEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE---CS--SCEEEEEEEEETTEEESEEETT-EEEEEEET-----
T ss_pred CCceEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc---CC--EEEEEEEEeEECCcCccccCCCCEEEEEEeCC----
Confidence 469999999999999999 9999 9999999999999 67 45999999999999999999999999999985
Q ss_pred hhccccccccCCCeEEE
Q 000625 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
+ |+++||+||+
T Consensus 71 ---~---~i~eGDiLyV 81 (81)
T PF14578_consen 71 ---T---QIKEGDILYV 81 (81)
T ss_dssp -------TB-TT-EEEE
T ss_pred ---c---cCCCCCEEeC
Confidence 3 9999999995
No 129
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.68 E-value=2.5e-16 Score=164.54 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=103.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+++|++..+.......+...+....+.+.. ....|.||||||+..|..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------------~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------------TTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------------EEEEEEEEeCCchHHHHHHH
Confidence 3589999999999999999998876542222222222122222211 11248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCH-HHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEP-QTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~-QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++.-.. +...++..+.. .++|+||++||+|+... +..+.
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~----------------- 126 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK----RQVST----------------- 126 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----CcCCH-----------------
Confidence 8899999999999999864221 22233333333 35899999999998621 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.|+.+++.+|+..+
T Consensus 127 --~~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 127 --EEAQEYADEN---------------GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred --HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111112111 15799999999999999999987654
No 130
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.68 E-value=3.4e-16 Score=166.87 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+|+...+.....+.+...+. ..+.... ....|+||||||...|..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDN--------------EPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECC--------------EEEEEEEEeCCCchhhHHHh
Confidence 46999999999999999999987765333232221111 1111110 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..+|++|||+|+++....++...| ..+. ..++|+|||+||+|+...+ ..+.
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~----~v~~---------------- 127 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR----QVTT---------------- 127 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC----ccCH----------------
Confidence 9999999999999999987666665433 2222 2468999999999985210 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......... ..+++++|||++|.||.++|.+|+..+
T Consensus 128 ---~~~~~~a~~---------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 128 ---EEGRNLARE---------------FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ---HHHHHHHHH---------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 001111111 125899999999999999999987543
No 131
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=1.7e-16 Score=165.49 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|.+++|||||+++|.+..+... .+++...+. .+... ....|.||||||+..|..++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~---------------~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE---------------KHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC---------------CceEEEEEECCCCHhHHHHHHH
Confidence 89999999999999999998765422 111111111 11100 0135999999999999999998
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQ-TIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|||+|+.+..... ....+. ++. ..++|+|||+||+|+...+ ..
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~------------------ 119 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------TA------------------ 119 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------CH------------------
Confidence 999999999999998753211 112222 222 2579999999999985211 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+....+. ....+++++|||++|.||.+++.+|..
T Consensus 120 -~~i~~~~~~~~~~---------~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 120 -EEITRRFKLKKYC---------SDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred -HHHHHHcCCcccC---------CCCcEEEEecccccCCChHHHHHHHhc
Confidence 1111111101110 012468999999999999999998864
No 132
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=3.1e-16 Score=163.66 Aligned_cols=155 Identities=19% Similarity=0.119 Sum_probs=100.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|.+++|||||+++|....+.....+.+...+. ..+.... ....|.||||||++.|..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQIEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEE-EEEEECC--------------EEEEEEEEECCCccccchHH
Confidence 35999999999999999999976654332222211110 0111110 01247899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..+++.+|++|||+|+++......... +..+.. .++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE------RVVS--------------- 125 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------ceec---------------
Confidence 999999999999999987432222222 222322 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.. .++ ++++++||++|.||.+++.+|+..
T Consensus 126 ---~~~~~~~~~------------~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 126 ---REEGQALAR------------QWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ---HHHHHHHHH------------HcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 000011111 012 589999999999999999988753
No 133
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=3.5e-16 Score=164.23 Aligned_cols=156 Identities=19% Similarity=0.095 Sum_probs=101.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+++|||||+.+|+...+.....+++...+. ..+.... ....|.||||||+..|..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDG--------------QQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECC--------------EEEEEEEEECCCcccchhHH
Confidence 35899999999999999999866554332232221111 1111110 01247899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..+|++|||+|.++....+... ++..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------~~~~--------------- 125 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE------RVVG--------------- 125 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc------cEEc---------------
Confidence 99999999999999987643333222 222222 246899999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ ..+... -.++++++||++|.||.+++.+|+..+
T Consensus 126 --~~~~-~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 126 --KEQG-QNLARQ--------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --HHHH-HHHHHH--------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0000 111110 015899999999999999999987543
No 134
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=7.2e-16 Score=165.64 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|++..+.....+.+..++... +.... -....|.||||||+..|..++.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~-------------~~~~~l~i~Dt~G~~~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPN-------------GKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecC-------------CcEEEEEEEECCCchhHHHHHH
Confidence 589999999999999999998776544444333332211 11100 0012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+... .| ..+. ..++|+|||+||+|+...-. .... +.
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~---v~------------- 128 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN---LDRK---VT------------- 128 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc---ccCC---cC-------------
Confidence 9999999999999998754443332 12 2222 24689999999999862100 0000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...........+ ..++|++||++|.||.+++..|+..+..
T Consensus 129 ~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 129 PAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 001111111111 2378999999999999999998876544
No 135
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=1.9e-16 Score=192.37 Aligned_cols=150 Identities=24% Similarity=0.339 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-------
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH------- 867 (1384)
+|+|||++|+|||||+++|++.... ....+|+|.+.....+.+. ...|+||||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~----------------~~~~~liDTpG~~~~~~~~ 64 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG----------------GREFILIDTGGIEEDDDGL 64 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC----------------CeEEEEEECCCCCCcchhH
Confidence 3899999999999999999986542 2344666665443333332 235999999997
Q ss_pred -cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 868 -ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 868 -e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..|...+..++..+|++|||||+..|+.+....++.+++..+.|+|+|+||+|+... ..
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~-----~~--------------- 124 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE-----DA--------------- 124 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc-----cc---------------
Confidence 345556677888999999999999999999999999999999999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
....+...|+ .+++++||.+|.||.+|+..+...+
T Consensus 125 --------~~~~~~~lg~--------------~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 125 --------VAAEFYSLGF--------------GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred --------cHHHHHhcCC--------------CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 0011222232 2689999999999999999887654
No 136
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.68 E-value=3.7e-16 Score=166.49 Aligned_cols=167 Identities=16% Similarity=0.088 Sum_probs=106.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+++|.+..+.....++++.++....+.+..-. .......-....|.||||||+..|..++
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSG----PGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCcc----ccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 458999999999999999999877655444444443332222221100 0000000011248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-..+....| ..+.. .+.|+|||+||+|+... +...
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~----~~v~----------------- 139 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ----RQVS----------------- 139 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc----CccC-----------------
Confidence 9999999999999999874333333222 22322 36899999999998621 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++++||++|.||.+++.+|+..+
T Consensus 140 --~~~~~~~~~~~---------------~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 140 --EEQAKALADKY---------------GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred --HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00111111111 25899999999999999999987644
No 137
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.68 E-value=4.1e-16 Score=164.62 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|++++|||||+.+|++..+.......++..+....+.+.. ....|.||||||+..|..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~ 71 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG--------------HFVTLQIWDTAGQERFRSLR 71 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC--------------eEEEEEEEeCCChHHHHHhH
Confidence 3499999999999999999997766543333333222111111111 01248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH-HH-H------hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN-LL-K------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll-k------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...++.+|++|||+|+++....+....|. .+ . ..++|+|||+||+|+.. +...
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~-------------- 132 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-----RQVS-------------- 132 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-----cccC--------------
Confidence 99999999999999998754434333331 11 1 13589999999999851 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+... ..++++++||++|.||.+++..|+.
T Consensus 133 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 133 -----TEEAQAWCREN--------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -----HHHHHHHHHHC--------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 01111112222 1247999999999999999998864
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=3e-16 Score=160.07 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=100.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|+|++|+|||||+++|.+..+......++|.++....+...... ..+.|||||||..|..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~D~~G~~~~~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT--------------YKFNLLDTAGQEDYRAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE--------------EEEEEEECCCcccchHHH
Confidence 469999999999999999999887665555666666554433332100 248899999999997766
Q ss_pred HhcccccceeEEEeecc-------CCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIM-------HGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~-------~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
...+..++.+|+++|.. ++...+....+.++.. ++|+|||+||+|+... .+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~------------- 126 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA-------KLK------------- 126 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc-------hhh-------------
Confidence 65555555555555544 4333444444444433 8999999999999621 110
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
..+...+... ...+++++||.+|.||.+++.+|
T Consensus 127 -----~~~~~~~~~~--------------~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 127 -----THVAFLFAKL--------------NGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred -----HHHHHHHhhc--------------cCCceEEeecCCCCCHHHHHHHh
Confidence 0111112111 22479999999999999998876
No 139
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=3.3e-16 Score=161.11 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=102.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.|+|||||+++|.+..+.....+++...+.. +.. ....+.+|||||+..|..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~----------------~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK----------------GNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE----------------CCEEEEEEECCCCHhHHHHHHH
Confidence 7999999999999999999876654433332222111 111 1124899999999999999999
Q ss_pred cccccceeEEEeeccCCCC-HHHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||+|+++... .+....|..+.. .++|++|++||+|+... ...
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------~~~------------------ 119 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA------LSV------------------ 119 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------cCH------------------
Confidence 9999999999999986322 223334443322 47899999999998521 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+ +...++.. .....++++++||++|.||..++.+|..
T Consensus 120 -~~~---~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 -DEL---IEQMNLKS-------ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -HHH---HHHhCccc-------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 011 11111110 0123478999999999999999998864
No 140
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.68 E-value=3.4e-16 Score=163.40 Aligned_cols=153 Identities=21% Similarity=0.215 Sum_probs=102.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+.....+.++.++....+.+.. ....+.||||||+..|..++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------------KKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhH
Confidence 489999999999999999997765443333332222211111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++....+....| ..+ ...++|++||+||+|+... ..+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-----~~~~----------------- 125 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-----EVTR----------------- 125 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-----ccCH-----------------
Confidence 999999999999999875443333333 222 2356899999999998621 1110
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...... ..++++++||++|.||.+++..|+.
T Consensus 126 --~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 126 --EEGLKFARK---------------HNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred --HHHHHHHHH---------------cCCEEEEEecCCCCCHHHHHHHHHH
Confidence 011111111 1358999999999999999988764
No 141
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=4.3e-16 Score=164.14 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++|+|||||+++|++..+.....+.+..... ..+.. ......|.||||||+..|..++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~--------------~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISC--------------SKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE-EEEEE--------------CCEEEEEEEEECCCCCcchHHHH
Confidence 4899999999999999999987765333222211110 00000 01113489999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.++..+|++|||+|+++........ ++..++. .++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------~~v~~------------- 128 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK------REVSS------------- 128 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc------CeecH-------------
Confidence 8999999999999998855433322 2333332 46899999999998521 11000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.... .+.. . ..+++++|||++|.||.+++.+|+.+
T Consensus 129 ----~~~~-~~~~-~-------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 129 ----NEGA-ACAT-E-------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ----HHHH-HHHH-H-------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 0000 0110 0 12578999999999999999998753
No 142
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=3.8e-16 Score=168.98 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=102.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|.+++|||||+.+|+...+.....+.++..+.. .+.... ....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDG--------------QPCMLEVLDTAGQEEYTALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECC--------------EEEEEEEEECCCchhhHHHHHH
Confidence 8999999999999999999776643332222111100 000000 0123889999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+++.+|++|||+|+++.........| ..+.. .++|+|||+||+|+...+ .+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~------~v~~-------------- 126 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYER------EVST-------------- 126 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccC------ccCH--------------
Confidence 99999999999999875443333332 22321 368999999999986310 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......... .+++|++||++|.||.+++.+|+..+.
T Consensus 127 ---~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 127 ---EEGAALARRL---------------GCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ---HHHHHHHHHh---------------CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0000111111 147999999999999999999986554
No 143
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.68 E-value=4.7e-16 Score=163.87 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|.+..+.....+.++.++....+.... ....|.||||||+..|..++.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~Dt~g~~~~~~~~~ 68 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRND--------------KRVKLQIWDTAGQERYRTITT 68 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC--------------EEEEEEEEECCChHHHHHHHH
Confidence 489999999999999999998776543333332222111111100 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... +....
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~----~~~~~------------------ 126 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE----RVVSS------------------ 126 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc----cccCH------------------
Confidence 9999999999999997643322222 2333333 35799999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .++++++||++|.||.+|+.+|+..+
T Consensus 127 -~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 127 -ERGRQLADQL---------------GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0011111111 14799999999999999999987654
No 144
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=2.5e-16 Score=164.13 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=99.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+++|++..+.. ....+ .+....+.+ ....+.||||||+..|..++..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~-~~~t~--~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVT-TIPTI--GFNVETVEY----------------KNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-CCCCc--CcceEEEEE----------------CCEEEEEEECCCChhhHHHHHH
Confidence 8999999999999999999776321 11111 111111111 1235999999999999999999
Q ss_pred cccccceeEEEeeccCCC-CHHHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGL-EPQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv-~~QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|+|+|++.+- .......+..+ ...++|+|||+||+|+... ..
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~------------------- 117 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA------LS------------------- 117 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc------cC-------------------
Confidence 999999999999998752 12233333322 2357899999999998621 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...+..... ....++++++||++|.|+.+++.+|..
T Consensus 118 ~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 118 VSELIEKLGLEKI----------LGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHhhChhhc----------cCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 0111111111100 123579999999999999999988753
No 145
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.67 E-value=4.6e-16 Score=164.90 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=105.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh-
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~- 871 (1384)
|...|+|+|+.|+|||||+.+|+...+......+++..+....+.+.. ....|.||||||+..|.
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG--------------ERIKVQLWDTAGQERFRK 66 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC--------------eEEEEEEEeCCChHHHHH
Confidence 345699999999999999999987766544333333222222221111 11248999999999997
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++...+..+|++|||+|+++....+....|. .+.. .++|+|||+||+|+... +..
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~--------------- 127 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ----IQV--------------- 127 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh----cCC---------------
Confidence 56788889999999999999876666665553 3332 35899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC---CCChhhHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS---GEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t---GeGI~eLl~~L~~~ 1002 (1384)
.......+... ..++++++||++ +.||.+++..|+..
T Consensus 128 -----~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 128 -----PTDLAQRFADA--------------HSMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred -----CHHHHHHHHHH--------------cCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 00111122211 126899999999 88888888777653
No 146
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=6.5e-16 Score=165.29 Aligned_cols=166 Identities=14% Similarity=0.195 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++|||||+.+|.+..+.....+++...+.. .+.... ....|+||||||+..|..++.
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGG--------------EPYTLGLFDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECC--------------EEEEEEEEECCCccchhhhhh
Confidence 48999999999999999999877754444444332211 111110 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+... .| ..+.. .++|+|||+||+|+.. ...+...+.....+. ..
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~------~~~~~~~l~~~~~~~---v~-- 136 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD------DPSTIEKLAKNKQKP---IT-- 136 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh------ChhhHHHhhhccCCC---cC--
Confidence 8999999999999998855444442 23 33332 3689999999999852 111111111100000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.... ..+... .+.+++++|||++|.||.++|..++.
T Consensus 137 ~~~~-~~~a~~-------------~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 137 PETG-EKLARD-------------LKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHH-HHHHHH-------------hCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 0000 111110 12368999999999999999988765
No 147
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.67 E-value=8.8e-16 Score=158.92 Aligned_cols=157 Identities=26% Similarity=0.368 Sum_probs=105.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccccc-CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+..+|+|+|++|+|||||+++|++..+..... ...+.......+. .....+.||||||+..+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT----------------DDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE----------------cCCeEEEEEECCCCCcch
Confidence 45679999999999999999999765432211 1111111000000 111358999999976543
Q ss_pred --------HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000625 872 --------NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 872 --------~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
......+..+|++++|+|+.+.........+..+...+.|+||++||+|+... ..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~----------- 128 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KE----------- 128 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HH-----------
Confidence 33455688899999999999986666667777777778999999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+... ...++++++|++++.|+.+|+.+|.++
T Consensus 129 -------~~~~~~~~~~~~-------------~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 129 -------DLLPLLEKLKEL-------------GPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred -------HHHHHHHHHHhc-------------cCCCceEEEEeccCCChHHHHHHHHhh
Confidence 011111222211 124589999999999999999988653
No 148
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=4.2e-16 Score=166.16 Aligned_cols=152 Identities=26% Similarity=0.286 Sum_probs=99.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|....+.. ..+ .+|..+..+ .+....|.||||||+..|..++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~----t~~~~~~~~--------------~~~~~~~~l~D~~G~~~~~~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVH-TSP----TIGSNVEEI--------------VYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC-cCC----ccccceEEE--------------EECCeEEEEEECCCCHHHHHHH
Confidence 459999999999999999998665432 111 222211111 0112359999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHH-HHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQ-TIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
..++..||++|||+|+++..... ....| .++.. .++|+||++||+|+...+ +.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~---------------- 134 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TP---------------- 134 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CH----------------
Confidence 99999999999999998753211 12222 23322 358999999999985210 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ ++... . ...+++++|||++|.||.+++.+|.
T Consensus 135 ---~~i~~~l---~~~~~---~----~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 135 ---AEISESL---GLTSI---R----DHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ---HHHHHHh---Ccccc---c----CCceEEEecccCCCCCHHHHHHHHh
Confidence 1111111 11100 0 1236899999999999999999885
No 149
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=6.8e-16 Score=171.27 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=107.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.....|+|||..|+|||||+.+++...+.....+++...+....+.... ....|.||||||+..|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--------------GKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC--------------eEEEEEEEECCCchhhh
Confidence 5556799999999999999999987766544333332222222221110 01248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
.++..+++.+|++|||+|+++....+.+..| ..+. ..++|+|||+||+|+.. ....
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-------~~v~-------------- 135 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVK-------------- 135 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-------ccCC--------------
Confidence 9999999999999999999986554544433 2232 24689999999999851 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ .+... ..+++++|||++|.||.++|.+|+..+
T Consensus 136 ---~~~~--~~~~~--------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 136 ---AKQV--TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ---HHHH--HHHHh--------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0001 11110 125889999999999999999987644
No 150
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=3.6e-16 Score=168.40 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=103.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+.+.|+|+|+.|+|||||+++|.+..+.. ..+.+....+ .+.+ ....+.+||||||..|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~~~--~i~~----------------~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE--ELTI----------------GNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcceE--EEEE----------------CCEEEEEEECCCCHHHH
Confidence 456779999999999999999998765431 1111111111 1111 11248899999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++..++..+|++|||+|+++.-. ......+..+. ..++|+||++||+|+.. ....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~------------ 138 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSE------------ 138 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCH------------
Confidence 988888999999999999986421 11223333222 35689999999999852 1111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhh-cccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYY-KNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~-~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+....+...-+- ........+++++|||++|.||.+++.+|.++
T Consensus 139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 ------EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ------HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 111111211100000000 00011234689999999999999999999764
No 151
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=5.3e-16 Score=169.26 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=105.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+.|+|||+.|+|||||+.+|.+..+......+++.++....+.+.. ....+.||||||+..|..++
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING--------------ERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECC--------------EEEEEEEEeCCCchhHHHHH
Confidence 4599999999999999999998766543333333232222221111 00248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...+..+|++|||+|+++.-..+... ++..+.. ..+|+|||+||+|+... +....
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~----~~~~~------------------ 130 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER----KVVET------------------ 130 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cccCH------------------
Confidence 99999999999999998754333322 2333332 34899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... .++++++||++|.||.+|+.+|...+
T Consensus 131 -~~~~~~~~~~---------------~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 131 -EDAYKFAGQM---------------GISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred -HHHHHHHHHc---------------CCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 0111111111 25799999999999999999998655
No 152
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.66 E-value=6e-16 Score=162.42 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+++|||||+++|.+..+.....++++..+....+..... ...+.||||||+..|..++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK--------------TIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCChHHHHHHH
Confidence 35999999999999999999987765444444443332222222110 0248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..++++|||+|+++....+....| ..+.. .++|+|||+||+|+... +...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~----~~~~------------------ 127 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL----RAVP------------------ 127 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----ccCC------------------
Confidence 9999999999999999864333332222 22322 35899999999998621 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+.. ..++++++||++|.||..++.+|+..
T Consensus 128 -~~~~~~~~~~---------------~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 128 -TEEAKAFAEK---------------NGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred -HHHHHHHHHH---------------cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 0011111111 12589999999999999999998754
No 153
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=5.5e-16 Score=169.29 Aligned_cols=150 Identities=24% Similarity=0.281 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
.+.|+|||++|||||||+++|++..+......+.|.......+.+. ....++||||||+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP---------------DGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEec---------------CCceEEEeCCCccccCCCH
Confidence 3579999999999999999999875432222222221111111110 012599999999833
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHH-HHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|...+ ..+..+|++|+|+|++++....... +..++ ...++|+|||+||+|+...+ .
T Consensus 106 ~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~------- 170 (204)
T cd01878 106 QLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------E------- 170 (204)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------H-------
Confidence 22222 2356799999999999876544332 22333 33468999999999996310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ..+. ...++++++||++|.||.+++.+|...
T Consensus 171 -----------~~---~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 171 -----------LE---ERLE---------------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred -----------HH---HHhh---------------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 00 0110 124589999999999999999988653
No 154
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=4.9e-16 Score=165.07 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|....+.. ..++++.++. .+.. ....|.||||||+..|..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~----------------~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY----------------KNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE----------------CCEEEEEEECCCCHHHHHH
Confidence 3569999999999999999997654432 1122211111 1111 1124999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCC-HHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...++.||++|||+|+++... ......|. ++.. .++|+|||+||+|+...+ .
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------~---------------- 127 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------K---------------- 127 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------C----------------
Confidence 9889999999999999987422 22223332 2222 358999999999985210 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+ ++.. .....+++++|||+||.||.++|.+|.
T Consensus 128 ---~~~i~~~~---~~~~-------~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 128 ---PHEIQEKL---GLTR-------IRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ---HHHHHHHc---CCCc-------cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 01111111 1100 012345899999999999999999885
No 155
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.6e-17 Score=179.85 Aligned_cols=224 Identities=21% Similarity=0.266 Sum_probs=158.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc---ccccccCceeEeeeeeEeccc------ccccch---hhc------cc-----
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN---VQEGEAGGITQQIGATYFPAE------NIRERT---REL------KA----- 850 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~---v~~ge~gGITq~iga~~~~~~------~i~~~~---~~i------~~----- 850 (1384)
..+|.-+|||-|||||++.+|.+-. |...-.+.||+.+|...-... ..+..+ ... .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 4568999999999999999997532 333345778888875322110 001000 000 00
Q ss_pred ccccC-CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhcCC-ceEEEEeecccccCccc
Q 000625 851 NATLK-VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMRNT-EFIVALNKVDRLYGWKT 927 (1384)
Q Consensus 851 ~~~~~-~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~~v-P~IVaINKiDl~~~w~~ 927 (1384)
...++ .+++.|+|||||.-+...|..|....|.++|+|.++.. .+|||-+||..+..+.+ .+||+-||+|++..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e--- 194 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE--- 194 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhH---
Confidence 00111 34699999999999999999999999999999999875 68999999988877664 67889999999731
Q ss_pred CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000625 928 CRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 928 ~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
..++ .....|..++.. -+ ....|+||+||--+.||+-++++|+..++.+.
T Consensus 195 ------~~A~------------eq~e~I~kFi~~--t~----------ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 195 ------SQAL------------EQHEQIQKFIQG--TV----------AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ------HHHH------------HHHHHHHHHHhc--cc----------cCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 0011 112333333322 11 24569999999999999999999998876554
Q ss_pred HHhhhcccccceEEEEEEEEcC--------cceEEEEEEEeeeecCCCEEEEcc
Q 000625 1008 VEKLTFRNELQCTVLEVKVIEG--------HGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1008 ~e~l~~~~~~~~~VlEvk~~~G--------~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
. ++..+.++.|+.+|.+.. .|.++.|-+..|+|++||.|-+-+
T Consensus 245 R---df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRP 295 (466)
T KOG0466|consen 245 R---DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRP 295 (466)
T ss_pred c---ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecC
Confidence 4 356777888988886643 467788889999999999997643
No 156
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.66 E-value=6e-16 Score=162.70 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|....+.. ..+++..++ ..+. +....|.||||||+..|..++.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEE----------------ECCEEEEEEECCCCHhHHHHHH
Confidence 48999999999999999997554432 112111111 0111 1113489999999999999999
Q ss_pred hcccccceeEEEeeccCCCC-HHHHHHHHHH-Hh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLE-PQTIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.||++|||+|+++... .+..+.|..+ .. .++|+||++||+|+... ...
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------~~~----------------- 119 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------MSA----------------- 119 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------CCH-----------------
Confidence 99999999999999976321 1222333322 22 35899999999998521 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+ +++.. ....+.++++||++|.||.+++.+|.
T Consensus 120 --~~i~~~~---~~~~~-------~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 120 --AEVTDKL---GLHSL-------RNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred --HHHHHHh---Ccccc-------CCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1111112 22100 12345789999999999999999885
No 157
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=7.3e-16 Score=166.92 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|||.+++|||||+.+|....+..+ ...+++.++....+.+... ...|+||||||+..|..++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV--------------KVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE--------------EEEEEEEeCCCcHHHHHhh
Confidence 489999999999999999998776432 2222222222111211110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+... ++..+.. .++|+|||+||+|+... +...
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~----~~~~------------------ 125 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE----RVVK------------------ 125 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc----cccC------------------
Confidence 88999999999999998753332222 2233332 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+....... .++++++||++|.||.+|+.+|+..+..
T Consensus 126 -~~~~~~l~~~~---------------~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 126 -REDGERLAKEY---------------GVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred -HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00000111111 2589999999999999999999876543
No 158
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.66 E-value=9.6e-16 Score=162.26 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+.+|++..+.....+.+...+. ..+.... ....+.||||||+..|..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGG--------------KQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE-EEEEECC--------------EEEEEEEEeCCCccccccccc
Confidence 4899999999999999999988765444443322211 1111111 012378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++.-..+... ++..+. ..++|+|||+||+|+... ......+....... ..
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~-----v~ 135 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD------PKTLARLNDMKEKP-----VT 135 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC------hhhHHHHhhccCCC-----CC
Confidence 9999999999999998754333332 233333 357999999999998521 11111111000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
........... +..+++.|||++|.||.+++..++.
T Consensus 136 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 136 VEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHHHH
Confidence 01111112221 2247999999999999999988764
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1e-15 Score=157.84 Aligned_cols=144 Identities=26% Similarity=0.356 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH--
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~-- 872 (1384)
.|+++|++|+|||||+++|++..+. .+...++|..+....+.+. ...++||||||+..+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG----------------GIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC----------------CEEEEEEECCCcCCCcchH
Confidence 5899999999999999999976542 2334455554433222221 23589999999877643
Q ss_pred ------HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 873 ------LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.....+..+|++|+|+|+++.........+.. ..+.|+|||+||+|+...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~-------------------- 124 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSE-------------------- 124 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCccc--------------------
Confidence 23356778999999999998665555444443 46799999999999863110
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
. +. .....++|++||.+|.||.+|+.+|..+
T Consensus 125 --------~---~~--------------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 125 --------L---LS--------------LLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred --------c---cc--------------ccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 0 00 0124689999999999999999988754
No 160
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.66 E-value=9.5e-16 Score=157.46 Aligned_cols=153 Identities=25% Similarity=0.237 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+++|++..+......+++.++....+.... ....++||||||+..|..+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG--------------KTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC--------------EEEEEEEEecCChHHHHHHHH
Confidence 589999999999999999998776654434333333333322211 112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc---CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++.-....... +..+... ++|+||++||+|+... ....
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~------------------ 124 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ-----RQVS------------------ 124 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc-----cccc------------------
Confidence 99999999999999987433333333 3344443 4899999999998511 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...+.. ..++++.+||.+|.||.+++.+|.
T Consensus 125 ~~~~~~~~~~---------------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 125 TEEAQQFAKE---------------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHH---------------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 0111111111 125899999999999999998875
No 161
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=6.2e-16 Score=167.30 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..|+|||||+.+|++..+.....+.+...+... +... .....|+||||||+..|..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-i~~~--------------~~~~~l~i~Dt~G~~~~~~l~~ 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHD-IFVD--------------GLHIELSLWDTAGQEEFDRLRS 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEE-EEEC--------------CEEEEEEEEECCCChhcccccc
Confidence 489999999999999999998776543333332221100 0000 0112489999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++..+|++|||+|+++.-..+... ++..+.. .++|+|||+||+|+... ......+.. ..... ..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~------~~~~~~~~~----~~~~~-v~ 135 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA------RNERDDLQR----YGKHT-IS 135 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC------hhhHHHHhh----ccCCC-CC
Confidence 8999999999999998854444443 3344433 36899999999998621 000000000 00000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .+.+++++|||++|.||.++|.+|+..+
T Consensus 136 ~~~~~~~~~~--------------~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 136 YEEGLAVAKR--------------INALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHHHHHHH--------------cCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 0001111111 1236899999999999999999987654
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.66 E-value=1.6e-15 Score=163.88 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=104.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC---
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH--- 867 (1384)
+.|.|+|||++|+|||||+++|++..+. .....|.|..+..+.+ ...|.||||||+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------------------NDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------------------CCeEEEeCCCCCCCc
Confidence 3456999999999999999999975421 1223344444322211 135999999996
Q ss_pred -------cchhHHHHhccc---ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000625 868 -------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 868 -------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
..|..+...++. .++++++|+|+..++.......+.++...++|+++++||+|+...+ . ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~------~-~~-- 154 (196)
T PRK00454 84 KVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKG------E-RK-- 154 (196)
T ss_pred CCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHH------H-HH--
Confidence 334444444444 4478889999998888777777778888899999999999986321 0 00
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...+... .++++++||++|.|+.+++..|..++
T Consensus 155 ------------~~~~~i~~~l~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 155 ------------KQLKKVRKALKFG---------------DDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ------------HHHHHHHHHHHhc---------------CCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 0011111112111 25889999999999999999887654
No 163
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=5.6e-16 Score=188.73 Aligned_cols=149 Identities=27% Similarity=0.347 Sum_probs=110.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
|+|+|+|++|+|||||+++|++.... .....|+|.+.....+.+. ...|.||||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~----------------~~~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL----------------GREFILIDTGGIEPDDDG 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC----------------CcEEEEEECCCCCCcchh
Confidence 67999999999999999999977642 3345566655433333222 23599999999987
Q ss_pred h----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000625 870 F----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 870 F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
| ......++..+|++|||||+.+++.......+.+++..++|+|+|+||+|+... .
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~------~-------------- 125 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE------E-------------- 125 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc------h--------------
Confidence 2 333456778899999999999999988888888999999999999999997420 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.....+...|+ ..++++||.+|.||.+|+..|+.
T Consensus 126 --------~~~~~~~~lg~--------------~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 --------ADAYEFYSLGL--------------GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred --------hhHHHHHhcCC--------------CCCEEEEeeCCCCHHHHHHHHHh
Confidence 00011222222 14789999999999999988865
No 164
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=1.3e-15 Score=161.17 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+++|++..+.....+.+...+.. .+.... ....+.||||||+..|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSA-DVEVDG--------------KPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeE-EEEECC--------------EEEEEEEEECCCCcccchhchh
Confidence 6899999999999999999877654333333222111 111110 0124899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.+..+|++|||+|+++.-..+.. .++..+.. .++|+|||+||+|+... ......+....... + ..
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~---v--~~ 134 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED------KSTLRELSKQKQEP---V--TY 134 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC------hhhhhhhhcccCCC---c--cH
Confidence 99999999999999874222222 12333332 37999999999998621 10000000000000 0 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.......... +.+++++|||++|.||.+|+..|+..
T Consensus 135 ~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 135 EQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1111111111 22479999999999999999988754
No 165
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=1.7e-15 Score=159.98 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|.+..+... .+.++..+ ..... .......++||||||+..|..++.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~---~~~~~------------~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEI---TIPAD------------VTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccce---Eeeee------------ecCCeEEEEEEeCCCchhhhHHHh
Confidence 489999999999999999998766432 11111111 00000 000112489999999998888888
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++....+... .| ..++. .++|+|||+||+|+...+. . ..+. ..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~------~-~~~~-----------~~ 127 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS------Q-AGLE-----------EE 127 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc------h-hHHH-----------HH
Confidence 8889999999999998765544432 23 33432 3689999999999963210 0 0000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+..+...+ ....++++|||++|.|+.+++..+...
T Consensus 128 ~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 128 MLPIMNEF----------------REIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHH----------------hcccEEEEeccccccCHHHHHHHHHHH
Confidence 01111111 111379999999999999999887654
No 166
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=8.2e-16 Score=161.06 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|++++|||||+.++++..+.....+.+. ......+.... ....+.||||||+..|..++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDS--------------SPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECC--------------EEEEEEEEECCCcccccchHH
Confidence 589999999999999999997766533222211 11111111110 011378999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-HHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|||+|+++....+.. .++..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~------~~~~---------------- 125 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE------REVS---------------- 125 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc------CccC----------------
Confidence 999999999999999874322222 22222322 46999999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
... ...+.. .+ .+++|++||++|.||.+++.+|+..
T Consensus 126 -~~~-~~~~~~------------~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 126 -SAE-GRALAE------------EW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred -HHH-HHHHHH------------Hh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 000 011111 01 1489999999999999999988753
No 167
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=1e-15 Score=165.01 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=102.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.+.|+|+|.+|+|||||+++|.+..+... .+++...+ ..+. +....+.||||||+..|..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~~--~~~~----------------~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPTS--EELA----------------IGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccce--EEEE----------------ECCEEEEEEECCCCHHHHH
Confidence 457799999999999999999987654321 11111111 1111 1123489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCC-HHHHHHHHHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|+|||+++... ......+..+ . ..++|+|||+||+|+.... +
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~--------------- 135 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA------S--------------- 135 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC------C---------------
Confidence 99999999999999999987422 1222233322 2 2578999999999985210 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
...+...| ++.....-......+.+.+++|||++|.|+.+++.||..
T Consensus 136 ----~~~i~~~l---~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 136 ----EDELRYAL---GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ----HHHHHHHc---CCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 01121112 111000000000124568999999999999999999864
No 168
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.65 E-value=1.2e-15 Score=158.91 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+|+|||||+++|++..+.....+.+...+. ...... .....+.||||||+..|..++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD--------------GEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEEC--------------CEEEEEEEEECCChhhhhHHHH
Confidence 4899999999999999999977655433332221111 111110 0112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHH-HHHHHHHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++.-... ...++..+ . ..++|+|||+||+|+... +....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~----~~~~~----------------- 125 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK----RQVSS----------------- 125 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc----cccCH-----------------
Confidence 9999999999999987632111 11222222 2 257999999999998620 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......... .+++|++||++|.||.+|+..|...+
T Consensus 126 --~~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 126 --EEAANLARQW---------------GVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred --HHHHHHHHHh---------------CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0001111111 14899999999999999999987554
No 169
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=1.2e-15 Score=163.05 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=101.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.+.|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....|.||||||+..|..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~--~~~----------------~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE--TVT----------------YKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE--EEE----------------ECCEEEEEEECCCChhhHHH
Confidence 3569999999999999999997554422 1122221111 011 11234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCC-HHHHHHHHHHH-h---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk-~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+..++..||++|||+|+++.-. ....+.|..+. . .++|++||+||+|+...+ +.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~--------------- 132 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------KA--------------- 132 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------CH---------------
Confidence 9999999999999999986321 22334443332 2 358999999999986211 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+... .++.. -....+.+++|||++|.||.+++.+|...
T Consensus 133 ----~~i~~~---~~~~~-------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 133 ----AEITEK---LGLHS-------IRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred ----HHHHHH---hCccc-------cCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 011111 12210 01234678899999999999999998754
No 170
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=1e-15 Score=159.04 Aligned_cols=155 Identities=25% Similarity=0.213 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++++|||||+++|++..+.....+.++..+....+.+.. ....+.+|||||+..|..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG--------------KRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC--------------EEEEEEEEECCchHHHHHhhH
Confidence 489999999999999999998776544333333322211111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|++++-..+....| ..+. ..++|+|||+||+|+... ..+..
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~------~~~~~---------------- 125 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ------RVVSK---------------- 125 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc------cCCCH----------------
Confidence 889999999999999886544333332 2222 236899999999998621 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+... .++++++||++|.||.+++.+|...
T Consensus 126 -~~~~~~~~~~---------------~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 126 -SEAEEYAKSV---------------GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred -HHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 0111111111 2478999999999999999998754
No 171
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.65 E-value=9.5e-16 Score=162.59 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=98.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+.+|.+..+.. ..+++...+. .+. +....|+||||||+..|..++..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVE----------------YKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEE----------------ECCEEEEEEECCCChhcchHHHH
Confidence 7899999999999999998764432 2222211211 111 11235899999999999999988
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHHHHH-h---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLK-M---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~llk-~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|||+|+++.-.. .....|..+. . .++|+|||+||+|+.. ..+.
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~------~~~~------------------ 118 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG------ALSV------------------ 118 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc------CCCH------------------
Confidence 99999999999999773211 1222333232 2 2489999999999852 0110
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+...+....+ ..+..+.|++|||++|.||.++|.+|...
T Consensus 119 -~~~~~~~~~~~~---------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 119 -EEMTELLSLHKL---------CCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred -HHHHHHhCCccc---------cCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 111111110010 01234578999999999999999998653
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=1e-15 Score=166.83 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.|+|||||+++|++..+.......+ ..+....+.+.. ....++|||||||..|..++..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~l~i~D~~G~~~~~~~~~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGG--------------VSLTLDILDTSGSYSFPAMRKL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECC--------------EEEEEEEEECCCchhhhHHHHH
Confidence 8999999999999999999776543222211 111111111110 0024889999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..+|++|||+|+++....+....| ..+ ...++|+|||+||+|+... ...+.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----~~~v~----------------- 124 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE-----ERQVP----------------- 124 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc-----ccccc-----------------
Confidence 99999999999999875433322222 222 2247999999999998631 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+...+ .. ...++++++||++|.||.+|+.+|+..+.
T Consensus 125 ~~~~~~~~-~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 125 AKDALSTV-EL-------------DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHH-Hh-------------hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 00000001 00 01257899999999999999999987654
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=5e-16 Score=163.70 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC----cchh
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----ESFT 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----e~F~ 871 (1384)
.|+|+|++++|||||+++|.+.... +...+.+.+ .. ..+|||||. ..|.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-------~~~~~~v~~------------------~~--~~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-------ARKTQAVEF------------------ND--KGDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-------CccceEEEE------------------CC--CCcccCCccccCCHHHH
Confidence 3999999999999999998754311 111111111 01 126999995 3454
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..++..+|++|||||++.+....+...+.+ ..++|+|+++||+|+.. .+.
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~-------~~~------------------ 108 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD-------ADV------------------ 108 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc-------ccH------------------
Confidence 444556889999999999998765544333332 24689999999999852 111
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
..+...+...++ ..|+|+|||++|.||.+|+..|..++..
T Consensus 109 -~~~~~~~~~~~~-------------~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 109 -AATRKLLLETGF-------------EEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -HHHHHHHHHcCC-------------CCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 112223333332 2599999999999999999998776543
No 174
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.65 E-value=1.5e-15 Score=164.75 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=106.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|+.++|||||+.+|....+.....+.+...+.. .+..+. ....|.||||||++.|..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDG--------------RTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECC--------------EEEEEEEEECCCchhhhh
Confidence 34569999999999999999999877754443333221110 011110 112489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHH-HH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIE-SL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
++..+++.+|++|||+|+++.-..+... .| ..+.. .++|+|||.||+|+... ......+.... +
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~------~~~~~~~~~~~------~ 134 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND------ADTLKKLKEQG------Q 134 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC------hhhHHHHhhcc------C
Confidence 9999999999999999998754444432 23 22222 46899999999998521 11111110000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......-...|... .+.++++.|||++|.||.++|.+|+..+
T Consensus 135 ~~v~~~~~~~~a~~-------------~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 135 APITPQQGGALAKQ-------------IHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHH-------------cCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00000000111110 0235899999999999999999987654
No 175
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.6e-15 Score=163.33 Aligned_cols=156 Identities=22% Similarity=0.205 Sum_probs=101.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|+|..++|||||+.+|....+.. ..+++..++ ..+. +....++||||||+..|..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~--~~~~----------------~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE----------------YKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE--EEEE----------------ECCEEEEEEECCCCHHHHHH
Confidence 3469999999999999999997654432 222222111 1111 11234899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHH-HHHHHHHH-Hh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLL-KM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~ll-k~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...++.+|++|||+|+++.-... ....|..+ .. .++|+|||+||+|+... .+
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------~~---------------- 135 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------MN---------------- 135 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------CC----------------
Confidence 999999999999999998743221 12223222 21 36899999999998621 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...| |+.. + ..+.+.+++|||+||+||.+++.+|...+
T Consensus 136 ---~~~~~~~l---~l~~-~------~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 136 ---AAEITDKL---GLHS-L------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ---HHHHHHHh---Cccc-c------CCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 01111112 2210 0 01245688999999999999999987543
No 176
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.65 E-value=1.1e-15 Score=167.09 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh----
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT---- 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~---- 871 (1384)
.|+|+|..++|||||+++|.+..+.....++++..+....+.+... ...++||||||+..|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR--------------VYDLHILDVPNMQRYPGTAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE--------------EEEEEEEeCCCcccCCccch
Confidence 4899999999999999999987765444444332221111111110 1248899999987652
Q ss_pred ----HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH------hcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 872 ----NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK------MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 872 ----~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk------~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
..+.+.+..||++|||+|+++....+....| ..+. ..++|+|||+||+|+... +...
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~----~~~~-------- 135 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH----RFAP-------- 135 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc----cccc--------
Confidence 1244567889999999999875433333322 2222 245899999999998521 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.... ..++|++|||++|.||.+||..++..
T Consensus 136 ------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 136 ------------RHVLSVLVRKS-------------WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred ------------HHHHHHHHHHh-------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00011111110 13689999999999999999888754
No 177
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=3.3e-15 Score=175.81 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC-----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----- 866 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----- 866 (1384)
.+..|||+|.|++|||||+|+|++.. +..+...|+|.+.-...+. ++...|.||||.|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e----------------~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE----------------RDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE----------------ECCeEEEEEECCCCCccc
Confidence 44569999999999999999999754 3445566777664333333 3345699999999
Q ss_pred -----CcchhHHHH-hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 867 -----HESFTNLRS-RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 867 -----He~F~~~r~-rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
++.|+..+. ..+..||+|+||+|+..|+..|....+.++...+.++|||+||+|++..+ ..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~-------- 307 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EA-------- 307 (444)
T ss_pred ccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hh--------
Confidence 455655543 56778999999999999999999999999999999999999999997320 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....+. ..+...|.. -.+.|+|++||++|.||..|+..+...+.
T Consensus 308 ---~~~~~k---~~i~~~l~~--------------l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 308 ---TMEEFK---KKLRRKLPF--------------LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ---HHHHHH---HHHHHHhcc--------------ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 111111 122222222 13569999999999999999998876543
No 178
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.64 E-value=1.6e-15 Score=167.57 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+++|++..+.....+.++.++....+.+... ....|.||||||+..|..++.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-------------~~~~~~i~Dt~G~~~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-------------LNVTLQVWDIGGQSIGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-------------CEEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999987776555454544432222222110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHh------cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
..++.+|++|||+|+++.-....... +..+.. .++|+|||+||+|+...+ ....
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~----~v~~--------------- 129 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR----TVKD--------------- 129 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc----ccCH---------------
Confidence 99999999999999987433333322 233332 236899999999985210 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
... ..+... + .+++++|||++|.||.+|+.+|+..+.
T Consensus 130 ----~~~-~~~~~~------------~--~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 130 ----DKH-ARFAQA------------N--GMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ----HHH-HHHHHH------------c--CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 111111 0 147899999999999999999976543
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.64 E-value=1.4e-15 Score=195.17 Aligned_cols=152 Identities=23% Similarity=0.325 Sum_probs=112.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.|+|+|+|++++|||||+++|++.... .....|+|.+.-...+. |....|.||||||+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~----------------~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE----------------WAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE----------------ECCEEEEEEeCCCcCCCCc
Confidence 356999999999999999999976532 23456676654322222 2224589999999653
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|...+..++..||++|||||+.+|+.+....++.+|+..++|+|+|+||+|+... .
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~-------~------------ 399 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS-------E------------ 399 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc-------h------------
Confidence 4556667888999999999999999999888899999999999999999998520 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.....+...|+ + .+++|||++|.||.+|+.+|+..+
T Consensus 400 ---------~~~~~~~~lg~-----------~---~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 400 ---------YDAAEFWKLGL-----------G---EPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred ---------hhHHHHHHcCC-----------C---CeEEEECCCCCCchHHHHHHHHhc
Confidence 00011222232 1 347999999999999999987654
No 180
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=2.3e-15 Score=160.27 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|++..+.....+.+...+....+..... ...+.||||||+..|..++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV--------------PFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCChHHHHhhHH
Confidence 4899999999999999999988776554444443322122211110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHH-HHHHHhc----CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++.+|++|||+|+++.-....... +..+... .+|+|+|.||+|+...+ ....
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~----------------- 126 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYAL----------------- 126 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----cccc-----------------
Confidence 99999999999999977322222222 2333222 25799999999985210 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......+... ..++++.+||++|.||.+|+..|..++.
T Consensus 127 -~~~~~~~~~~~--------------~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 127 -MEQDAIKLAAE--------------MQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred -cHHHHHHHHHH--------------cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00000111110 1147899999999999999999887653
No 181
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.64 E-value=2.3e-15 Score=160.53 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||++|+|||||+.+|++..+.....+++.... ...+.+.. ....+.||||||+..|..++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~ 67 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKG--------------QDYHLEIVDTAGQDEYSILPQ 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECC--------------EEEEEEEEECCChHhhHHHHH
Confidence 499999999999999999997766543333322111 11111110 012478999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..+|++|+|+|++++...+....| ..+ . ..++|+|||+||+|+...+ ....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~----~~~~----------------- 126 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR----QVST----------------- 126 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC----ccCH-----------------
Confidence 999999999999999986555544333 222 2 2468999999999985210 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...... ++ ++++++||++|.||.+++.+|...+.
T Consensus 127 --~~~~~~~~~-------------~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 127 --EEGKELAES-------------WG--AAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred --HHHHHHHHH-------------cC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000001111 11 48999999999999999999987664
No 182
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=2.2e-15 Score=163.58 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||..++||||||.+|....+.......++..+....+..+. ....|.||||||+..|..++
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDG--------------RRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECC--------------EEEEEEEEeCCCcHHHHHHH
Confidence 4599999999999999999997665443333333333222222111 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...++.+|++|||+|+++....+.... +..+.. .++|+|||.||+|+... +.-.
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~----~~v~------------------- 129 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK----RQVA------------------- 129 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc----cCCC-------------------
Confidence 999999999999999988544433333 233332 46899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+....... .++++.|||++|.||.++|.+|+..+
T Consensus 130 ~~~~~~~a~~~---------------~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 130 TEQAQAYAERN---------------GMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHc---------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 01111111111 25899999999999999999987644
No 183
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.64 E-value=2.4e-15 Score=158.26 Aligned_cols=165 Identities=17% Similarity=0.186 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+++|++..+.....+.+....... +.... ....+.|||||||..|..++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~l~~~D~~g~~~~~~~~~ 66 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT-VTVDG--------------KQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE-EEECC--------------EEEEEEEEeCCCcccccccch
Confidence 589999999999999999998876433333332222211 11110 012489999999999988888
Q ss_pred hcccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++....+.. .++..+.. .++|+|||+||+|+...+ +....+......+ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~v------~ 134 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE------NTLKKLEKGKEPI------T 134 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch------hhhhhcccCCCcc------C
Confidence 888999999999999874332222 23333333 359999999999987321 1000000000000 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.......+... +..+++++||++|.||.+|+..|+.
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 135 PEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 00111111111 2348999999999999999988764
No 184
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=2e-15 Score=162.69 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|....+.. ..+++..++. .+. +....++||||||+..|..++
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~----------------~~~~~~~l~D~~G~~~~~~~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE----------------YKNLKFTMWDVGGQDKLRPLW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE----------------ECCEEEEEEECCCCHhHHHHH
Confidence 459999999999999999997554432 1122111111 111 111348999999999999999
Q ss_pred HhcccccceeEEEeeccCCCC-HHHHHHHH-HHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLE-PQTIESLN-LLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~-llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-. ......|. ++.. .++|+|||+||+|+...+ +.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------~~---------------- 136 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------ST---------------- 136 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------CH----------------
Confidence 999999999999999976211 11222232 2222 358999999999985211 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
..+... .++. +.. ...++++++||++|.||.+++.+|...+...|
T Consensus 137 ---~~i~~~---l~~~---~~~----~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 137 ---TEVTEK---LGLH---SVR----QRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred ---HHHHHH---hCCC---ccc----CCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 011111 1221 000 13457889999999999999999987665543
No 185
>PLN03110 Rab GTPase; Provisional
Probab=99.64 E-value=3.9e-15 Score=164.76 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|.+..+......++...+....+.+... ...+.||||||+..|..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~--------------~~~l~l~Dt~G~~~~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK--------------TVKAQIWDTAGQERYRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE--------------EEEEEEEECCCcHHHHHHH
Confidence 35999999999999999999987665433333333332222222110 1248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.++++|||+|+++....+.+..| ..+.. .++|+|||+||+|+...+ ...
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----~~~------------------ 136 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR----SVA------------------ 136 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc----CCC------------------
Confidence 9999999999999999875444444433 33333 469999999999985211 000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
......+... ..++++++||++|.||.+++.+|+..+...
T Consensus 137 --~~~~~~l~~~--------------~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 137 --EEDGQALAEK--------------EGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred --HHHHHHHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111110 125899999999999999999998776553
No 186
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=2.2e-15 Score=157.73 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--cccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t--~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.|+|||.+++|||||+.+|+.. .+.....+++..++....+++.. -....+.||||||+..|..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~~ 68 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-------------DNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-------------CCEEEEEEEECCCHHHHHHH
Confidence 4899999999999999999854 33333333332232222222210 00124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
+...+..+|++|||+|+++.........| ..+.. .++|+|||+||+|+... .....
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~----------------- 127 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK----AEVTD----------------- 127 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc----cCCCH-----------------
Confidence 99999999999999999874333323322 33333 35899999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+... ..++++++||.+|.||.+++..|...
T Consensus 128 ---~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 128 ---AQAQAFAQA--------------NQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred ---HHHHHHHHH--------------cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 000011110 12579999999999999999988754
No 187
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=3.2e-15 Score=164.49 Aligned_cols=157 Identities=21% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|||+.++|||||+.+|++..+... .+.++..+....+.+.. ....|.||||||+..|..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGG--------------KRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECC--------------EEEEEEEEECCCchhhHHH
Confidence 45699999999999999999997765321 12222111111111110 0124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHH-HHH-HHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIE-SLN-LLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~-llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
+..+++.+|++|||+|+++....+.+. .|. .+. ..++|+|||+||+|+... ..+.
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------~~i~------------- 139 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------RDVS------------- 139 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------CccC-------------
Confidence 999999999999999998754444443 232 222 135799999999998621 0000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
........... .+++|++||++|.||.+++.+|...+
T Consensus 140 ----~~~~~~~~~~~---------------~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 140 ----REEGMALAKEH---------------GCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred ----HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 25799999999999999999988655
No 188
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.64 E-value=1.6e-15 Score=166.08 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=102.4
Q ss_pred EcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhccc
Q 000625 800 MGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSG 879 (1384)
Q Consensus 800 lGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~ 879 (1384)
||+.++|||||+.+|++..+......++..++....+.++. ....|.||||||++.|..++..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~--------------~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR--------------GPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC--------------EEEEEEEEECCCchhhhhhhHHHhc
Confidence 69999999999999997766543333332222212111111 1124899999999999999999999
Q ss_pred ccceeEEEeeccCCCCHHHHHHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000625 880 LCDIAILVVDIMHGLEPQTIESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 880 ~aDiaILVVDa~~Gv~~QT~E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
.+|++|||+|+++....+....| ..+.. .++|+|||+||+|+.. +... . ..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-----~~v~-----~--------------~~~- 121 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-----RKVK-----A--------------KSI- 121 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-----ccCC-----H--------------HHH-
Confidence 99999999999987655555444 33443 4689999999999852 0000 0 000
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.+... ..+++++|||++|.||.++|.+|+..+
T Consensus 122 -~~~~~--------------~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 122 -TFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -HHHHH--------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11110 135899999999999999999997654
No 189
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.63 E-value=1.7e-15 Score=160.55 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||+.++|||||+.+|++..+.....+.+...+.. .+.+.. ....+.||||||+..|..++.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDG--------------KQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECC--------------EEEEEEEEeCCCchhhhhccc
Confidence 49999999999999999999876654333332222111 111110 012489999999999998888
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++..+|++|||+|+++.-..... . ++..++. .++|+|||+||+|+...|. ....+....... ..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~i~~~~~~~-----v~ 136 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH------TRRELAKMKQEP-----VK 136 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh------hhhhhhhccCCC-----cc
Confidence 889999999999999863222222 1 2223332 3789999999999863211 100000000000 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
........... +.+++|+|||++|.||.+|+.+|...
T Consensus 137 ~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRDMANKI--------------GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHHHHHc--------------CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 00001111111 23589999999999999999988753
No 190
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=2.7e-15 Score=160.41 Aligned_cols=167 Identities=18% Similarity=0.214 Sum_probs=103.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..++|||||+.+++...+.....+.+...+.. .+.... ....|+||||||+..|..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDG--------------KPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEE-EEEECC--------------EEEEEEEEECCCchhhhhhh
Confidence 358999999999999999999876654333333211111 111110 11248899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...+..+|++|||+|+++.-..+... ++..+.. .++|+|||.||+|+... ...+ ..+...... ..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~-----~~~~-~~~~~~~~~---~v-- 135 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD-----KDTI-EKLKEKKLT---PI-- 135 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccC-----hhhH-HHHhhccCC---CC--
Confidence 99999999999999998854444432 2233332 36899999999998521 0000 000000000 00
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
............ +.+++++|||+||.||.+++..|+.
T Consensus 136 ~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 136 TYPQGLAMAKEI--------------GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CHHHHHHHHHHc--------------CCcEEEEecccccCCHHHHHHHHHH
Confidence 000111111111 2358999999999999999988864
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.8e-15 Score=194.29 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=113.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc----
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE---- 868 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe---- 868 (1384)
.+.|+|+|++|+|||||+++|++..+. .....|+|.+.....+.+ ....++||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~----------------~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI----------------DGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE----------------CCCEEEEEECCCcccCcc
Confidence 467999999999999999999987642 234556665443322222 22358899999953
Q ss_pred ------chhHHH-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 869 ------SFTNLR-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 869 ------~F~~~r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
.|..++ ..++..||++|||||++++++.|+...+..+...++|+|||+||+|++.. .....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~-------~~~~~----- 581 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE-------FRRQR----- 581 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh-------hHHHH-----
Confidence 244443 34578899999999999999999999998888889999999999999621 10000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
+...+... +. .-..+++++|||++|.||.+|+..+...+.
T Consensus 582 -------------~~~~~~~~-l~---------~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 582 -------------LERLWKTE-FD---------RVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred -------------HHHHHHHh-cc---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 10111110 10 013468999999999999999999887664
No 192
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.63 E-value=3.8e-15 Score=160.60 Aligned_cols=160 Identities=10% Similarity=0.079 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|++..+.....+++..++....+..... ...|.||||+|+..|..++.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~--------------~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT--------------EITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE--------------EEEEEEEeCCCchhHHHhhH
Confidence 4899999999999999999987765444343332222112221110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|||+|+++....+... ++..++. ..+| |+|+||+|+...... .-...
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~----~~~~~--------------- 127 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPP----EEQEE--------------- 127 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccc----hhhhh---------------
Confidence 9999999999999998743333322 2233333 2456 678999998631100 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+......+... + .+++++|||++|.||.+|+.+|+..+
T Consensus 128 ~~~~~~~~a~~------------~--~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 128 ITKQARKYAKA------------M--KAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred hHHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011111111 1 15899999999999999999987544
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=2.6e-15 Score=153.16 Aligned_cols=154 Identities=25% Similarity=0.327 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH-----
Q 000625 799 IMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN----- 872 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~----- 872 (1384)
|+|++|+|||||+++|.+..+. .+...+.|.......+.... ...++||||||+..+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP---------------LGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC---------------CCcEEEEECCCCCccccchhhH
Confidence 6899999999999999976654 33344444443333222210 24699999999877643
Q ss_pred --HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 873 --LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 873 --~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.....++.+|++|||+|+..+....+..++..+...++|+|||+||+|++.. ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~------~~~~~~-------------- 125 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE------EEEEEL-------------- 125 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh------hhHHHH--------------
Confidence 4445778899999999999988877776677777789999999999998731 111000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. ...... .....++++++||.+|.|+..|+.+|..+
T Consensus 126 -~~-~~~~~~-------------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 126 -LE-LRLLIL-------------LLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -HH-HHHhhc-------------ccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 00 000000 11245799999999999999999988753
No 194
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.63 E-value=1.3e-15 Score=161.23 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+.+.|+|+|+.|+|||||+++|.+..+... ....|...... .+....+.||||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i--------------~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV--------------QSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE--------------EECCEEEEEEECCCCHHHH
Confidence 3456799999999999999999987644211 11111111000 0112348999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCC-HHHHHHHHHH----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLL----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~ll----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++...+..||++|+|+|+.+... ..+...+..+ ...++|+++++||+|+... ...
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~------------- 133 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA------APA------------- 133 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC------CCH-------------
Confidence 999889999999999999976321 2222233222 2346899999999998521 000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+...+ ++.. + ....++++++||++|+||.+++.+|+.
T Consensus 134 ------~~i~~~l---~~~~-~------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 134 ------EEIAEAL---NLHD-L------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ------HHHHHHc---CCcc-c------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1111111 2210 0 113457899999999999999999863
No 195
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.63 E-value=2.6e-15 Score=162.33 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|+|++++|||||+++|++..+..+ ..+.+...+....+..... ...|.||||||+..|..++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER--------------VVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE--------------EEEEEEEECCCchhhhhhh
Confidence 489999999999999999998776532 2222222111111111110 0137899999999999998
Q ss_pred HhcccccceeEEEeeccCCCCHHHH-HHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
...+..+|++|||+|+++....+.. .++..+... ++|+|||+||+|+... ......+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~------~~~~~~v~------------- 128 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ------DRSLRQVD------------- 128 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccc------ccccCccC-------------
Confidence 8889999999999999875333222 233444433 6899999999998521 00000000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+....... .++++++||++|.||.+|+.+|...+.
T Consensus 129 ~~~~~~~~~~~---------------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 129 FHDVQDFADEI---------------KAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHHHHHHc---------------CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 257899999999999999999986653
No 196
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=1e-15 Score=161.83 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=77.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|||+.++|||||+.+|.+..+.....+ .+|..+..+ .+....|.||||||+..|..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~~~~i--------------~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP----TTGFNSVAI--------------PTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc----cCCcceEEE--------------eeCCeEEEEEECCCCcchhHHHHH
Confidence 79999999999999999997655432222 222211111 112235899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHHH--hcCCceEEEEeecccc
Q 000625 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLK--MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk--~~~vP~IVaINKiDl~ 922 (1384)
++..+|++|||||+++..... ....|..+. ..++|+|||+||+|+.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 999999999999998754322 222233332 2579999999999986
No 197
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.63 E-value=1.6e-15 Score=171.19 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++|||||+.+|++..+.....+++. ++....+.... ....|+||||||+..|..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~--------------~~~~l~I~Dt~G~~~~~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRG--------------EVYQLDILDTSGNHPFPAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECC--------------EEEEEEEEECCCChhhhHHHH
Confidence 489999999999999999998777654333332 11111111110 012488999999999999998
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh------------cCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM------------RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~------------~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
.++..+|++|||+|+++....+.+..| ..+.. .++|+|||+||+|+... +...
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~----~~v~---------- 132 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP----REVQ---------- 132 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc----cccC----------
Confidence 889999999999999874333322222 22211 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+...+... ..+++++|||++|.||.+|+.+|+.++
T Consensus 133 ---------~~ei~~~~~~~--------------~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 133 ---------RDEVEQLVGGD--------------ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---------HHHHHHHHHhc--------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 01111111110 135899999999999999999998754
No 198
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=2.4e-15 Score=177.72 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=96.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-------
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH------- 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH------- 867 (1384)
|.|+|+|++|+|||||+++|++..+......+.|.++....+.+. ....++||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---------------~~~~i~l~DT~G~~~~l~~~ 254 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---------------DGGEVLLTDTVGFIRDLPHE 254 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---------------CCceEEEEecCcccccCCHH
Confidence 679999999999999999999875433333333433321111110 1235999999997
Q ss_pred --cchhHHHHhcccccceeEEEeeccCCCCHHHHH----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 868 --ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 868 --e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
+.|...+ ..+..||++|+|||+++........ .+..+...++|+|+|+||+|+... ..
T Consensus 255 lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~--------- 318 (351)
T TIGR03156 255 LVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PR--------- 318 (351)
T ss_pred HHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------Hh---------
Confidence 3344333 3477899999999999875543332 233333346899999999998620 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+. .+.. ...++|+|||++|.||..|+.+|..+
T Consensus 319 -------------v~-~~~~---------------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 -------------IE-RLEE---------------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred -------------HH-HHHh---------------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 00 0100 11368999999999999999988653
No 199
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.62 E-value=3e-15 Score=157.42 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=96.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-hhHHHH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES-FTNLRS 875 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~-F~~~r~ 875 (1384)
|+|+|++++|||||+.+|+...+.....+.+. ......+.+. .....+.||||||+.. |..++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--------------~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTID--------------GEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEEC--------------CEEEEEEEEECCCCcccccchHH
Confidence 89999999999999999986544322222111 0100111110 0112488999999985 455677
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH-----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+.++.+|++|||+|+++....+....| ..+. ..++|+|||+||+|+... ..+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~v~--------------- 125 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY------RQVS--------------- 125 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh------CccC---------------
Confidence 788999999999999886443333332 2222 237999999999998521 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1384)
........... .++++++||++|. ||.++|..|+..+
T Consensus 126 --~~~~~~~~~~~---------------~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 126 --TEEGEKLASEL---------------GCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred --HHHHHHHHHHc---------------CCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00000111111 1589999999995 9999999987654
No 200
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=2.8e-15 Score=158.93 Aligned_cols=153 Identities=22% Similarity=0.230 Sum_probs=99.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|..++|||||+++|.+. +.... ...+|...... .+....++||||||+..|..++..
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~~~~----~~t~g~~~~~~--------------~~~~~~~~i~D~~G~~~~~~~~~~ 62 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IPKKV----APTVGFTPTKL--------------RLDKYEVCIFDLGGGANFRGIWVN 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CCccc----cCcccceEEEE--------------EECCEEEEEEECCCcHHHHHHHHH
Confidence 899999999999999999865 22111 11222211110 011235899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHH-HHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
++..||++|||||+++.-..+ ....+..+.. .++|+|||+||+|+.... +
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------~------------------- 117 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL------L------------------- 117 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC------C-------------------
Confidence 999999999999998743222 2333443332 468999999999986310 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC------CChhhHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG------EGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG------eGI~eLl~~L~ 1000 (1384)
...+...+....+. ...+..+++++|||++| .||.+-|.||+
T Consensus 118 ~~~i~~~~~l~~~~-------~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 118 GADVIEYLSLEKLV-------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred HHHHHHhcCccccc-------CCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 01111111111110 01123578999999998 89999999985
No 201
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=1.7e-15 Score=155.34 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-----ch
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-----SF 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-----~F 870 (1384)
.|+|+|++++|||||+++|++..+.. .+ | ++.. + ...+|||||+. .|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~--t--~~~~-------------------~---~~~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KK--T--QAVE-------------------Y---NDGAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--cc--c--eeEE-------------------E---cCeeecCchhhhhhHHHH
Confidence 38999999999999999998664321 00 1 1100 1 12689999972 24
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..++ ..++.+|++|||+|++++...++..++.. .+.|+|+|+||+|+... ....
T Consensus 54 ~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~-----~~~~----------------- 107 (142)
T TIGR02528 54 SALI-VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA-----DVDI----------------- 107 (142)
T ss_pred HHHH-HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc-----ccCH-----------------
Confidence 4333 45889999999999998876665443333 24599999999998520 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+...+ ..++|++||++|.||.+|+.+|.
T Consensus 108 --~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 --ERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred --HHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 01111121211 23789999999999999998763
No 202
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.62 E-value=5e-15 Score=159.00 Aligned_cols=164 Identities=14% Similarity=0.201 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.++....+.....+++...+. ..+..+. ....|+||||+|++.|..++.
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~--------------~~v~l~i~Dt~G~~~~~~~~~ 67 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDG--------------NTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECC--------------EEEEEEEEECCCCccccccch
Confidence 4899999999999999999987775444333322111 0111110 112489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhh--HHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN--TDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~--~~v~~ef~ 949 (1384)
.+++.+|++|||+|.++.-..+.. . ++..++. .++|+|||.||+|+... +. .+..+. ..+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~----~~-----~~~~~~~~~~v~---- 134 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDD----KQ-----YLADHPGASPIT---- 134 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccC----hh-----hhhhccCCCCCC----
Confidence 999999999999999886555443 2 3444443 36899999999998521 00 000000 0000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
........... +..+++.|||++|.||.++|..|+..+
T Consensus 135 --~~~~~~~a~~~--------------~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 --TAQGEELRKQI--------------GAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred --HHHHHHHHHHc--------------CCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 00111111111 123699999999999999999887643
No 203
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=5.6e-15 Score=159.29 Aligned_cols=158 Identities=21% Similarity=0.222 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+++|.+..+.......++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK--------------IIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEECCCcHHHHhhHH
Confidence 5899999999999999999987765433333332222111211110 12488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|||+|+++.-....+..| ..+.. .++|+|||+||+|+... ..+.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------~~v~----------------- 124 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN------KVVD----------------- 124 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc------ccCC-----------------
Confidence 999999999999999874333322222 22322 35899999999998621 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
......+... ..++++.+||++|.||.+++.+|+..+..
T Consensus 125 -~~~~~~~~~~--------------~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 125 -SNIAKSFCDS--------------LNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred -HHHHHHHHHH--------------cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 0000111110 12489999999999999999998876543
No 204
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.3e-16 Score=177.99 Aligned_cols=132 Identities=26% Similarity=0.335 Sum_probs=102.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcC------------ccc----ccccCceeEeeeeeEecccccccchhhccccc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGT------------NVQ----EGEAGGITQQIGATYFPAENIRERTRELKANA 852 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t------------~v~----~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~ 852 (1384)
..++|| +.|+.|||||||||+++|... .+. ....+|||+...+..+-++....--..++...
T Consensus 16 ~~NiRN--mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 16 KKNIRN--MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred cccccc--ceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 457898 899999999999999999631 111 12247788877776655443222222222222
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+..-|++||.|||.+|++.+..+++++|++++|||+.+|+..||...|+++..-.+.-++++||||+.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 3334459999999999999999999999999999999999999999999999999888888999999984
No 205
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.61 E-value=4.5e-15 Score=156.89 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=100.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|.+++|||||+.+|.+..+.....+.+...+ ...+.+.. ....+.|||||||..|..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDG--------------RQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECC--------------EEEEEEEEeCCCcccchhhhH
Confidence 489999999999999999986654322222111110 00011110 012478999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-----HHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-----LLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-----llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+..++++|||+|+++....+....|. +....++|+|+++||+|+... +....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~----~~~~~----------------- 126 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD----RQVSR----------------- 126 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc----CccCH-----------------
Confidence 9999999999999998743322222221 122346999999999998521 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
......... + +.++++++||++|.||.+++.+|+..+
T Consensus 127 --~~~~~~~~~-------------~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 127 --EDGVSLSQQ-------------W-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred --HHHHHHHHH-------------c-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 001111111 1 236899999999999999999987543
No 206
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=5.3e-15 Score=155.64 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.+|+...+.....++++.++....+..... ...|.||||||+..|..++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI--------------KVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE--------------EEEEEEEeCCCcHhHHhhHH
Confidence 4899999999999999999987776444444443332222222110 02488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..+..+|++|+|+|+++.-..+....| ..+.. .++|+|||.||+|+... +...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~----~~v~------------------- 124 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK----RQVG------------------- 124 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc----cCCC-------------------
Confidence 999999999999999874322222222 22222 35899999999998521 0000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+... + .+++++|||++|.||.+++.+|+.+
T Consensus 125 -~~~~~~~~~~------------~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 125 -DEQGNKLAKE------------Y--GMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred -HHHHHHHHHH------------c--CCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 0011111111 1 1589999999999999999998753
No 207
>PLN03108 Rab family protein; Provisional
Probab=99.61 E-value=6.2e-15 Score=162.44 Aligned_cols=158 Identities=21% Similarity=0.155 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||+.++|||||+++|++..+......+++.+++...+.+... ...|.||||||+..|..++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~--------------~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK--------------PIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE--------------EEEEEEEeCCCcHHHHHHH
Confidence 45999999999999999999987665433333322222111111110 0138899999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
...++.+|++|||+|+++....+....| ..+.. .++|+||++||+|+... +...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~~~~------------------ 130 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR----RAVS------------------ 130 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc----cCCC------------------
Confidence 9999999999999999874433333222 22222 36899999999998521 0000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......+... .++++++||++|.||.++|.+++..+-
T Consensus 131 -~~~~~~~~~~~---------------~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 131 -TEEGEQFAKEH---------------GLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred -HHHHHHHHHHc---------------CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111111111 258999999999999999988876543
No 208
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=8.3e-15 Score=161.64 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|||..++|||||+++|++..+.....++++.++....+.+.. . ....|.||||||+..|..++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~----------~---~~~~l~i~Dt~G~~~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP----------G---VRIKLQLWDTAGQERFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC----------C---CEEEEEEEeCCcchhHHHHH
Confidence 4599999999999999999998776543333333222211111100 0 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHH-HHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIES-LNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
...++.+|++|||+|+++.-....+.. +..+. ...+|+||+.||+|+...+ ...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~----~v~----------------- 128 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR----QVT----------------- 128 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc----ccC-----------------
Confidence 999999999999999987422222222 22222 2347889999999986210 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
......+... ++ ++++++||++|.||.+++.+|...+...
T Consensus 129 ---~~~~~~~~~~------------~~--~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 129 ---REEAEKLAKD------------LG--MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ---HHHHHHHHHH------------hC--CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0001111111 11 5899999999999999999998766544
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=155.84 Aligned_cols=160 Identities=22% Similarity=0.310 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC---
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH--- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH--- 867 (1384)
..|-||++|.+++|||||+++|++.. ...+.++|.||.+..+.+.. .+.|+|.||+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-------------------~~~lVDlPGYGyA 83 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-------------------ELRLVDLPGYGYA 83 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-------------------cEEEEeCCCcccc
Confidence 45669999999999999999999865 56778899999997655432 3889999994
Q ss_pred -------cchhHHHHhcccc---cceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000625 868 -------ESFTNLRSRGSGL---CDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 868 -------e~F~~~r~rg~~~---aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+.+..+...++.. ..++|+|||+.|++....++.+.++...++|++|++||||.+. ....
T Consensus 84 kv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~------~~~~---- 153 (200)
T COG0218 84 KVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLK------KSER---- 153 (200)
T ss_pred cCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCC------hhHH----
Confidence 2344444444432 5689999999999999999999999999999999999999983 1111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+...| ++.. .....++..|+.++.||++|...|..++.
T Consensus 154 -----------~k~l~~v~~~l---~~~~---------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 154 -----------NKQLNKVAEEL---KKPP---------PDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred -----------HHHHHHHHHHh---cCCC---------CccceEEEEecccccCHHHHHHHHHHHhh
Confidence 11122222222 1111 11112888999999999999998887664
No 210
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=5.4e-15 Score=153.21 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=100.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|++++|||||+++|++..+.....+.+. +.....+.+.. ....+.|||||||..|..++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~l~D~~g~~~~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDG--------------ETYTLDILDTAGQEEFSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECC--------------EEEEEEEEECCChHHHHHHHHH
Confidence 89999999999999999997664433322211 11111111110 0124889999999999999999
Q ss_pred cccccceeEEEeeccCCCCH-HHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEP-QTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~-QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+..+|++|+|+|+++.... +...++..+.. .++|++||+||+|+...+ ...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~------------------- 123 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER----QVS------------------- 123 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc----eec-------------------
Confidence 99999999999998774221 12223333322 369999999999986311 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...+... .++++++||++|.||.+++.+|...
T Consensus 124 ~~~~~~~~~~~---------------~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 124 KEEGKALAKEW---------------GCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHhh
Confidence 01111122211 1589999999999999999998753
No 211
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.2e-14 Score=156.83 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|+.++|||||+.+|+...+.....+.+...+. ..+.... ....|.||||+|.+.|..++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~--------------~~~~l~iwDtaG~e~~~~~~ 70 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDT--------------QRIELSLWDTSGSPYYDNVR 70 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECC--------------EEEEEEEEECCCchhhHhhh
Confidence 35999999999999999999987765443333322211 1111110 01248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHH-HHH-HHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTI-ESL-NLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~-E~l-~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+++.+|++|||+|+++....+.. ..| ..++. .++|+|||.||+|+... ......+..+.... .
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~~~~~~~~~---v-- 139 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD------LTTLVELSNHRQTP---V-- 139 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC------hhhHHHHHhcCCCC---C--
Confidence 9999999999999999886444443 223 33333 36899999999998521 11111111000000 0
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCC-hhhHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1384)
............ +.++++.|||++|.| |.++|..++.
T Consensus 140 ~~~~~~~~a~~~--------------~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 140 SYDQGANMAKQI--------------GAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CHHHHHHHHHHc--------------CCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 001111111111 124899999999998 9999988765
No 212
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=161.84 Aligned_cols=187 Identities=21% Similarity=0.269 Sum_probs=110.2
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
.+.-|...|+|+|.+++|||||+|.+.+..|..-.. .+.++++.+.+..- ..++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-----------------eTQlvf~DTPG 129 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-----------------ETQLVFYDTPG 129 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-----------------ceEEEEecCCc
Confidence 355677889999999999999999999887653222 22223332222211 13699999999
Q ss_pred Cc------------chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh-cCCceEEEEeecccccCcccCCCchH
Q 000625 867 HE------------SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 867 He------------~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.. +|.....+++..+|++|+|+|+++.-.+.....|..+.. .++|-|+|+||+|.+. ..
T Consensus 130 lvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k------~k-- 201 (379)
T KOG1423|consen 130 LVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK------QK-- 201 (379)
T ss_pred ccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch------hh--
Confidence 21 122344467888999999999986333333345555555 4689999999999862 11
Q ss_pred HHHHHHhhHHHHH-HHHHHHHHHHHHHHHcCCchhhhhc-ccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 934 VKAIKQQNTDVQN-EFNMRLVQIVTQLKEQGMNTELYYK-NKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 934 ~~~l~~q~~~v~~-ef~~~i~~I~~~L~~~Gl~~e~~~~-~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..|......+.+ .+......+...+.. ......|+ ...|..+-.+|++||++|+||.+|-++|+..+
T Consensus 202 -~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~--~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 202 -RLLLNLKDLLTNGELAKLKLEVQEKFTD--VPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred -hHHhhhHHhccccccchhhhhHHHHhcc--CCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111110000000 000000111111111 11111111 12355677899999999999999999998654
No 213
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=151.84 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=116.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccc-------ccccCc-----eeEeeeeeEecccccccchhhcccccccCCC
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-------EGEAGG-----ITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-------~ge~gG-----ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..++.+.|+|+|..++||||++.+|...... .....+ +.+++|...+.+ ..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-----------------~~ 68 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-----------------DT 68 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-----------------cc
Confidence 4577788999999999999999999865421 111111 223333322221 25
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC-CceEEEEeecccccCcccCCCchHHHH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
+++|+|||||..|..|+.-.++.++++||+||++.+......+.++++...+ +|++|++||.|+...|..
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp--------- 139 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP--------- 139 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH---------
Confidence 7999999999999999999999999999999999987777778888998888 999999999999865521
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..|...|... + -.+|+|+++|..++|+.+.|..|..
T Consensus 140 ----------------e~i~e~l~~~-~------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 140 ----------------EKIREALKLE-L------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred ----------------HHHHHHHHhc-c------------CCCceeeeecccchhHHHHHHHHHh
Confidence 1122222211 0 2469999999999999988877654
No 214
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.59 E-value=1.1e-14 Score=154.68 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.++|||||+.++.+..+.....+.+ .+.....+..+. ....+.||||||+..|..++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--------------~~~~~~i~Dt~G~~~~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDG--------------KPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECC--------------EEEEEEEEECCCChhhccccc
Confidence 48999999999999999998766543332221 111111111110 012488999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH--HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+.. .++..+.. .++|+|||+||+|+... ......+...... ...
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~-----~v~ 135 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD------VNVLIQLARYGEK-----PVS 135 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC------hhHHHHHhhcCCC-----CcC
Confidence 999999999999999875433332 23444443 36899999999998521 1110000000000 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+....... +..+|++|||++|.||.+|+..++
T Consensus 136 ~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 136 QSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 01111111111 224899999999999999998765
No 215
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=1.8e-14 Score=154.92 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+.....+.+...+. ..+..+. ....|.||||||++.|..++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~--------------~~~~l~iwDt~G~~~~~~~~~ 67 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDE--------------QRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECC--------------EEEEEEEEECCCchhhhhcch
Confidence 4899999999999999999987765444333322211 1111110 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-H-HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI-E-SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E-~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+|++|||+|+++.-..+.. . ++..++. .++|+|||.||+|+... .+....+..+... .. .
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~------~~~~~~~~~~~~~---~v--~ 136 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD------LSTLMELSHQRQA---PV--S 136 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC------hhHHHHHHhcCCC---CC--C
Confidence 999999999999999875444442 2 3333433 36899999999998521 0000001000000 00 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCC-hhhHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEG-IPDLLLLLVQ 1001 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeG-I~eLl~~L~~ 1001 (1384)
........... +.++++.|||++|+| |.++|..++.
T Consensus 137 ~~e~~~~a~~~--------------~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQGCAIAKQL--------------GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHHHHHHh--------------CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 00111111111 123799999999995 9999988875
No 216
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.59 E-value=8.1e-15 Score=187.84 Aligned_cols=154 Identities=24% Similarity=0.299 Sum_probs=108.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.++|+++||+|+|||||+++|++.+...+...|+|.+.-...+.+ ....++||||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~----------------~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST----------------TDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc----------------CceEEEEEECCCcccccc
Confidence 3467999999999999999999988776677788877543333322 223599999999998853
Q ss_pred H----------HHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 873 L----------RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 873 ~----------r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
. .... ...+|++|+|||+++... ....+.++...++|+|+|+||+|+.. ...+.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~------~~~i~------ 131 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE------KQNIR------ 131 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh------ccCcH------
Confidence 2 1112 246899999999988533 34456677888999999999999852 11110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+. .|.+. + .+|+||+||.+|.||++|+..+....
T Consensus 132 ---------id~~----~L~~~------------L--G~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 ---------IDID----ALSAR------------L--GCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------HHHH----HHHHH------------h--CCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0011 11110 1 25899999999999999999887654
No 217
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.9e-14 Score=168.98 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=99.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|+|||.+++||||||++|+.........++.|. ++|...+. ....|+||||||...
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-----------------~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-----------------DYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-----------------CCcEEEEEeCCCccCCCCcc
Confidence 999999999999999999876544333333343 34433221 113499999999532
Q ss_pred --hhHHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 870 --FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
+.....+.+..|+++|+|||+++.-..+.+..| ..|.. .+.|+|||+||||++..+ ... .
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------~~~---~--- 291 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE------EER---E--- 291 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch------hHH---H---
Confidence 334455677789999999999864334444444 33433 368999999999986311 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
..+...+.. ..+++|+|||++|+||.+|+.+|..++.
T Consensus 292 -----------~~~~~~~~~---------------~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 292 -----------KRAALELAA---------------LGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred -----------HHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 000001111 1147999999999999999999987654
No 218
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.59 E-value=9.5e-15 Score=160.32 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|.|+|+|++|+|||||+.+|....+.... ..++..++.+++... .....|.|||||||..|..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~--------------~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSE--------------GKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecC--------------CCCceEEEEECCCCHHHHHHH
Confidence 56999999999999999999877554322 222333332222110 112359999999999999998
Q ss_pred Hhccccc-ceeEEEeeccCCC--CHHHHHHHHHH----H--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000625 875 SRGSGLC-DIAILVVDIMHGL--EPQTIESLNLL----K--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 875 ~rg~~~a-DiaILVVDa~~Gv--~~QT~E~l~ll----k--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
..++..+ +++|||||+.+.. ...+.++|..+ . ..++|+|||+||+|+... .+...+...|......++
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a---~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA---KPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc---CCHHHHHHHHHHHHHHHH
Confidence 8889998 9999999998852 12333443221 1 147999999999998632 122223333332222221
Q ss_pred HHHHHHHHHHHHHHHH---c-CCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHH
Q 000625 946 NEFNMRLVQIVTQLKE---Q-GMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLV 1000 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~---~-Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~ 1000 (1384)
......+..+...-.. . |.... .+.-..+...+.|+.+|+..+. ||..+..||.
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~~~-~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKGGK-SFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred HHHhccccccccccccccccccccCc-ceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 1111000000000000 0 00000 0111223468899999999877 6888877764
No 219
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=8.8e-15 Score=154.49 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=93.1
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-------h
Q 000625 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-------T 871 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-------~ 871 (1384)
|+|++|+|||||+++|.+..+......+.|.......+.+.. ...++||||||+... .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~i~DtpG~~~~~~~~~~~~ 65 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD---------------GARIQVADIPGLIEGASEGRGLG 65 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC---------------CCeEEEEeccccchhhhcCCCcc
Confidence 589999999999999998765333344444433222221110 245899999997432 2
Q ss_pred HHHHhcccccceeEEEeeccCCC------CHHHHH-HHHHHH----------hcCCceEEEEeecccccCcccCCCchHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGL------EPQTIE-SLNLLK----------MRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv------~~QT~E-~l~llk----------~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....+.+..+|++|+|+|+.+.. ...... ++..+. ..++|+|||+||+|+... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 138 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------EEL- 138 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------hHH-
Confidence 22344567799999999998863 222222 222222 147899999999998621 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......... .....+++++||++|.||.+|+.+|+.+
T Consensus 139 ------------------~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 139 ------------------EEELVRELA-------------LEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ------------------HHHHHHHHh-------------cCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000000 1123579999999999999999988643
No 220
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.59 E-value=7e-15 Score=179.33 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=104.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
.+.|+|+|++++|||||+++|++..+. .....|+|.++....+.+. ...++||||||+..|..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~----------------g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD----------------GIPLRLIDTAGIRETDD 278 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC----------------CeEEEEEeCCCCCCCcc
Confidence 356999999999999999999986542 3444566655433322222 23489999999877643
Q ss_pred H--------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 873 L--------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 873 ~--------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
. ....+..+|++|+|||++++...+....|.. ..++|+|+|+||+|+... ..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~------~~------------ 338 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGE------ID------------ 338 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcccc------ch------------
Confidence 2 2235778999999999999877666655554 457899999999998621 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+. . ....++|+|||++|.||..|+.+|...+
T Consensus 339 ----------~~-----~-------------~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 339 ----------LE-----E-------------ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ----------hh-----h-------------ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 00 0 0124789999999999999999987654
No 221
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=2.9e-14 Score=172.37 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=99.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
-|.|+|+|.+|+|||||+++|++..+......+.|.+.....+.+. ....++||||||+..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~---------------~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVA---------------DVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeC---------------CCCeEEEEecCcccccCCH
Confidence 3779999999999999999999876543333344433221111111 112588999999743
Q ss_pred -----hhHHHHhcccccceeEEEeeccCCCCHHHH----HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 870 -----FTNLRSRGSGLCDIAILVVDIMHGLEPQTI----ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 -----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~----E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|... ...+..+|++|+|+|+++....... ..+..+...++|+|+|+||||++..+ .
T Consensus 262 ~lve~f~~t-l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~--------~------ 326 (426)
T PRK11058 262 DLVAAFKAT-LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF--------E------ 326 (426)
T ss_pred HHHHHHHHH-HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch--------h------
Confidence 4332 3456789999999999986544333 23444444579999999999986210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.. + . ....++ ..+|+|||++|.||.+|+.+|...+.
T Consensus 327 ---------~~---~-~-~~~~~~--------------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 ---------PR---I-D-RDEENK--------------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---------HH---H-H-HHhcCC--------------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 00 0 0 001111 12588999999999999999987664
No 222
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=2.5e-14 Score=160.02 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|||..++|||||+.+|++..+.....++|...+.. .+.... ....|.||||||++.|..+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~--------------~~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEE--------------QRVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECC--------------EEEEEEEEeCCCchhhHHH
Confidence 3468999999999999999999877665444443222110 111110 0124899999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHH-H-HHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQT-I-ESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT-~-E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+..+++.+|++|||+|+++.-..+. . .++..+.. .++|+|||.||+|+... ......+..+....
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~------~~~~~~l~~~~~~~----- 146 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD------LSTLMELSNQKQAP----- 146 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc------cchhhhhccccCCc-----
Confidence 9999999999999999987544443 1 22334432 36899999999998521 00000110000000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCC-ChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGE-GIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGe-GI~eLl~~L~~~~ 1003 (1384)
.............| ..+++.|||+||. ||.++|..|+..+
T Consensus 147 Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 147 ISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 00011111122221 1268999999998 8999999887654
No 223
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=8.2e-15 Score=155.76 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=101.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
..|+|+|..|+|||||+.+|++..+. ....+.+...+....+.+... ...+.||||+|...|..+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~--------------~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ--------------EKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe--------------EEEEEEEecCCccccccc
Confidence 34899999999999999999987765 444343332222111211110 023889999999999988
Q ss_pred HHhcccccceeEEEeeccCCCCHHHH-HHHHHHH-hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLK-MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk-~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
+..++..||++|||+|+++.-..+.. .++..+. ..++|+|||+||+|+..... ... . .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-----~~~----~-----------~ 130 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-----RYE----V-----------Q 130 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc-----ccc----c-----------C
Confidence 88889999999999999774222221 2233332 23699999999999852110 000 0 0
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+ ....++ ..++++||++|.||.+|+..|+..+
T Consensus 131 ~~~~---~~~~~~--------------~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 131 PDEF---CRKLGL--------------PPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHHH---HHHcCC--------------CCCEEEEeccCccHHHHHHHHHHHh
Confidence 0001 111111 1458999999999999999887654
No 224
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=9.1e-15 Score=153.84 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.+...|++||..++|||||+-++....+.... ..+||+.|+.-.... . -....|.||||.|++.|.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~----e~TIGaaF~tktv~~--------~--~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI----EPTIGAAFLTKTVTV--------D--DNTIKFEIWDTAGQERYH 68 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc----ccccccEEEEEEEEe--------C--CcEEEEEEEEcCCccccc
Confidence 45567999999999999999999988877653 345676665422100 0 011348899999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHHH-HHHHhcC---CceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLKMRN---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~---vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+...+++.+++||||+|+++--..++...| ..|+... +-+.+|.||+|+... +.-.
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~----R~V~--------------- 129 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER----REVE--------------- 129 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc----cccc---------------
Confidence 9999999999999999999986555555444 4554433 345569999999620 1111
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
..........+| ..|+.+||+||.||.++|..|...++.
T Consensus 130 ----~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 130 ----FEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ----HHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHHhccC
Confidence 112222222233 489999999999999999998876643
No 225
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.57 E-value=1.9e-14 Score=168.71 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc----
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES---- 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~---- 869 (1384)
-|+|||.+++||||||++|+.........++.| .++|...+.. ...|+||||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-----------------~~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-----------------GRSFVIADIPGLIEGASE 221 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-----------------ceEEEEEeCCCcccCCcc
Confidence 399999999999999999987653322222223 3344332211 13589999999742
Q ss_pred ---hhHHHHhcccccceeEEEeeccCC---CCHHHHHHH-HHHHh-----cCCceEEEEeecccccCcccCCCchHHHHH
Q 000625 870 ---FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIESL-NLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~l-~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
+.....+.+..||++|+|||+++. -..+....| +.+.. .+.|+|||+||||++.. .. +
T Consensus 222 ~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------~~----~ 291 (329)
T TIGR02729 222 GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE------EE----L 291 (329)
T ss_pred cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh------HH----H
Confidence 233445566779999999999864 122333333 22332 36899999999998621 00 0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+...+... + .+++|+|||++|+||.+|+.+|..++
T Consensus 292 ---------------~~~~~~l~~~------------~--~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 292 ---------------AELLKELKKA------------L--GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ---------------HHHHHHHHHH------------c--CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 1111122111 0 14799999999999999999987643
No 226
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=3.5e-14 Score=147.49 Aligned_cols=153 Identities=25% Similarity=0.357 Sum_probs=100.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|+|+|++|+|||||++.|.+.... .....+.|..+.. +... ..++|||||||..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-----------------~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-----------------DKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-----------------CeEEEecCCCccccccCH
Confidence 799999999999999999953322 1112223322211 1111 1589999999754
Q ss_pred -----hhHHHHhcc---cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhh
Q 000625 870 -----FTNLRSRGS---GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQN 941 (1384)
Q Consensus 870 -----F~~~r~rg~---~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~ 941 (1384)
|..++..++ ..++++++|+|+.+..+......++.+...++|+++++||+|+... .-.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~-------~~~------- 128 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK-------SEL------- 128 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh-------HHH-------
Confidence 333333333 3467899999999888888888888888889999999999998621 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 942 TDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 942 ~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+...+.. +...++++++||++|.|+.+++.+|..+
T Consensus 129 -------~~~~~~~~~~l~~-------------~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 129 -------AKALKEIKKELKL-------------FEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -------HHHHHHHHHHHHh-------------ccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 0000111111211 0134689999999999999999998754
No 227
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=5.2e-14 Score=169.16 Aligned_cols=88 Identities=35% Similarity=0.447 Sum_probs=59.5
Q ss_pred chhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchhh
Q 000625 507 EKKMSKQVREMQEALAR-RKEAEERKKREEEERLRKEEEERKRLEELERQAEEAKRRKKEKEKE-KLLKKKQEGKLLTGK 584 (1384)
Q Consensus 507 ~~~~~~~~~~~~e~~~~-~~~~ee~~~~eEEE~~~~eeEe~~~~eeeer~~~e~~~~k~~~~ke-k~~~~k~e~~~~~~k 584 (1384)
...+++++.++++++++ .+++||+.|+++||+++++++|++..|..+++++.+++++++++.+ ++++.+|++ .
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~-----~ 290 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKE-----E 290 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHH-----H
Confidence 45666776666666655 5566777777777777777777777777777777777777777777 788877776 3
Q ss_pred HHHHHHHHHHHHHHH
Q 000625 585 QKEEARRLEAMRNQF 599 (1384)
Q Consensus 585 ~~~~~~~~~~~~~~~ 599 (1384)
++...+++.+++.+.
T Consensus 291 ~a~aea~l~~ll~sg 305 (1064)
T KOG1144|consen 291 AALAEAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHHHHHhcC
Confidence 444444455555544
No 228
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.57 E-value=1.3e-14 Score=155.44 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=107.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|..++||||||.+|....+.. +...+|..... ..+....++|||.+|+..|..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~--------------i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEE--------------IKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEE--------------EEETTEEEEEEEESSSGGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccce--------------eeeCcEEEEEEeccccccccc
Confidence 34569999999999999999998654332 11222221111 012223599999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
++..++..+|++|+|||+++.- .....+.|..+.. .++|++|++||+|+... .+
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------~~--------------- 132 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------MS--------------- 132 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------ST---------------
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------ch---------------
Confidence 9999999999999999998732 2445555544332 46899999999998631 11
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+...|....+. ....+.+++|||.+|+||.+.++||...
T Consensus 133 ----~~~i~~~l~l~~l~---------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 ----EEEIKEYLGLEKLK---------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ----HHHHHHHTTGGGTT---------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ----hhHHHhhhhhhhcc---------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 11122222111111 1356899999999999999999998753
No 229
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.57 E-value=7.7e-15 Score=152.72 Aligned_cols=160 Identities=21% Similarity=0.222 Sum_probs=114.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|.+|||||||++++.+..+....... ||+.++.-+... + -....|.||||.|++.|..+.
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaT----IgadFltKev~V--------d--~~~vtlQiWDTAGQERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKAT----IGADFLTKEVQV--------D--DRSVTLQIWDTAGQERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccc----cchhheeeEEEE--------c--CeEEEEEEEecccHHHhhhcc
Confidence 45999999999999999999987765444333 444444322110 0 001248999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH--HHHhc------CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKMR------NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~~------~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
...++.+|+++||+|.++.-...+++.|+ +|... ..||||+.||+|+..+- .+-.
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--~r~V--------------- 138 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--SRQV--------------- 138 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--ccee---------------
Confidence 99999999999999999877777777774 44433 25999999999985320 0000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.......+.... +++|++.+||+.+.||.+.|..+.+.+
T Consensus 139 ----S~~~Aq~WC~s~--------------gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 139 ----SEKKAQTWCKSK--------------GNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred ----eHHHHHHHHHhc--------------CCceeEEecccccccHHHHHHHHHHHH
Confidence 012233344443 468999999999999999998887654
No 230
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.2e-14 Score=170.10 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=98.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-------
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------- 869 (1384)
|+|||.+++||||||++|+.........++.|.......+.+.. ...|+|+||||...
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~---------------~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD---------------ERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC---------------CcEEEEEeCCCccccccchhh
Confidence 99999999999999999997665444444444333222222110 12499999999532
Q ss_pred hhHHHHhcccccceeEEEeeccC----CCCHHHHHHHHHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMH----GLEPQTIESLNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~----Gv~~QT~E~l~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
+...+.+.+..||++|+|||++. ....+....++.+.. .+.|+|||+||+|++.. ..+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------~el------- 293 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE------EEA------- 293 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh------HHH-------
Confidence 23334467888999999999872 122222333344444 35899999999998620 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+... ++...++|+|||++|.||.+|+..|..+++
T Consensus 294 ------------~~~l~~l~~~------------~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 294 ------------EERAKAIVEA------------LGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred ------------HHHHHHHHHH------------hCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 0111111111 011236899999999999999999987664
No 231
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.1e-14 Score=150.38 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=114.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|+|+|..|+|||+|+-+|....+......+|..++..-.+..+... -.|.||||.|++.|..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~--------------iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT--------------IKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE--------------EEEEeeeccccHHHhhh
Confidence 3458999999999999999999988887776666666554444443211 24999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
+..+++.|+++|||+|++.--..+.+..| ..+. ..++|.++|.||+|+...|.-. .
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~----~---------------- 134 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS----T---------------- 134 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC----H----------------
Confidence 99999999999999999884443333333 2232 3468999999999996432100 0
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCcee-EEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFN-IVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~-iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.........+ ..| ++++||+.+.||.+.|..|...+...+
T Consensus 135 ---~~a~~fa~~~---------------~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 135 ---EEAQEFADEL---------------GIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred ---HHHHHHHHhc---------------CCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 0011111111 134 999999999999999988876554433
No 232
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.5e-14 Score=172.69 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
-|+|||.+++||||||++|.+........+++|.......+.+. ...|+||||||...
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~----------------~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG----------------DTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC----------------CeEEEEEECCCCccccchhh
Confidence 49999999999999999998765443444444443322222211 13499999999532
Q ss_pred -hhHHHHhcccccceeEEEeeccCC---CCH-HHHHHH-----HHH----------HhcCCceEEEEeecccccCcccCC
Q 000625 870 -FTNLRSRGSGLCDIAILVVDIMHG---LEP-QTIESL-----NLL----------KMRNTEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G---v~~-QT~E~l-----~ll----------k~~~vP~IVaINKiDl~~~w~~~~ 929 (1384)
......+.+..||++|+|||+++. ..+ ..+..| .++ ...+.|+|||+||||++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da----- 299 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA----- 299 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-----
Confidence 112234567789999999999741 111 122222 122 2246899999999998521
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 930 NAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
.. + ...+...+... .++||+|||++|.||.+|+.+|..++..
T Consensus 300 -~e----l--------------~e~l~~~l~~~---------------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 300 -RE----L--------------AEFVRPELEAR---------------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -HH----H--------------HHHHHHHHHHc---------------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0 00111122221 2489999999999999999999877654
No 233
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.8e-14 Score=148.76 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=115.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.++|||..|+|||+||-+++...++.-...+|..+.|+..+..+... -.|+||||.||+.|...+.
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~--------------IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ--------------IKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce--------------EEEEEEecCCcHHHHHHHH
Confidence 37899999999999999999888887766777778887777654321 2499999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.+-+||||+|++..-...-+.+| .-++ ..|+-|+++.||+||... + . +.
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r----R--~-----------Vs------ 130 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR----R--E-----------VS------ 130 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc----c--c-----------cc------
Confidence 999999999999999875444444433 2223 356889999999999621 1 1 11
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
-.+.-.+..++|| .++.+||+|++||.+.|..+...+
T Consensus 131 ~EEGeaFA~ehgL---------------ifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 131 KEEGEAFAREHGL---------------IFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHcCc---------------eeehhhhhhhhhHHHHHHHHHHHH
Confidence 1122234445554 677999999999999887765433
No 234
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=2.9e-14 Score=158.50 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|||..++||||||.+|.+..+.....+++...+.. .+.++. ....|.||||+|+..|..++.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~~~~--------------~~v~L~iwDt~G~e~~~~l~~ 67 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFEIDK--------------RRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEEECC--------------EEEEEEEEeCCCcHHHHHHhH
Confidence 48999999999999999999877665444443322211 111111 012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHH-HHHH-HHHh--cCCceEEEEeecccc
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTI-ESLN-LLKM--RNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~-E~l~-llk~--~~vP~IVaINKiDl~ 922 (1384)
.++..+|++|||+|+++.-..+.. ..|. .+.. .++|+|||.||+|+.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 999999999999999875333332 2232 2222 468999999999985
No 235
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=5.6e-14 Score=147.73 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=118.6
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
..+|...|+|||..++|||||+.++++..+......+|..++-...+.+.... ..|.||||.|++.
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~--------------vrLQlWDTAGQER 83 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------VRLQLWDTAGQER 83 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE--------------EEEEEEecccHHH
Confidence 44565679999999999999999999999987776666666544444332211 2599999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCC-CCHHHHHHHHHHHhc-C---CceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMHG-LEPQTIESLNLLKMR-N---TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk~~-~---vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|..+...+++.+.+||+|+|.++- ...+|..+|.-++.. + +-+++|.||.||... +...
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---------rqvs------- 147 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---------RQVS------- 147 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---------hhhh-------
Confidence 999999999999999999999874 446677777766543 2 456679999999731 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+ ..--....++ .+-|+.+||++|+||..||..|...++.
T Consensus 148 ~-------eEg~~kAkel---------------~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 148 I-------EEGERKAKEL---------------NAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred H-------HHHHHHHHHh---------------CcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 0 0000111111 2478999999999999999888766554
No 236
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=6.8e-14 Score=168.29 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
-|+|||.+++||||||++|++........+++|.......+.+. ....|+||||||...
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---------------~~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---------------DGRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---------------CCceEEEEECCCCcccccccc
Confidence 49999999999999999999765433333444433322222111 013599999999632
Q ss_pred -hhHHHHhcccccceeEEEeeccCC--CCH-HHHHH-HHHHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHH
Q 000625 870 -FTNLRSRGSGLCDIAILVVDIMHG--LEP-QTIES-LNLLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ 939 (1384)
Q Consensus 870 -F~~~r~rg~~~aDiaILVVDa~~G--v~~-QT~E~-l~llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~ 939 (1384)
+.....+.+..|+++|+|||+++. ..+ +.... +..|.. .+.|+|||+||||+.. .. .
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-------~~--e---- 291 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-------AE--E---- 291 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-------CH--H----
Confidence 223344566779999999999753 122 22332 334433 3689999999999741 10 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 940 QNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 940 q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+..+...+ + .++|+|||++|+||.+|+.+|..++.
T Consensus 292 -----------~l~~l~~~l----------------~--~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 292 -----------NLEEFKEKL----------------G--PKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred -----------HHHHHHHHh----------------C--CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 011111111 1 47999999999999999999876654
No 237
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=2.3e-14 Score=147.19 Aligned_cols=135 Identities=27% Similarity=0.348 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----CcchhH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----He~F~~ 872 (1384)
|.|||.+++|||||+.+|.+...... -||.+. + .=.+||||| +..|..
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~--~----------------------~~~~IDTPGEyiE~~~~y~ 55 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIE--Y----------------------YDNTIDTPGEYIENPRFYH 55 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCcC----ccceeE--e----------------------cccEEECChhheeCHHHHH
Confidence 89999999999999999987654322 244332 1 024799999 566766
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.....+..||+++||+|++.... ...-.++...+.|+|=||||+|+..+ . ..+
T Consensus 56 aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~-----~-------------------~~i 108 (143)
T PF10662_consen 56 ALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSD-----D-------------------ANI 108 (143)
T ss_pred HHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCCEEEEEECccCccc-----h-------------------hhH
Confidence 66777788999999999987532 12223455667899999999999621 1 223
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.....+|...|+. .+|+||+++|+||.+|..+|.
T Consensus 109 ~~a~~~L~~aG~~--------------~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 109 ERAKKWLKNAGVK--------------EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHHcCCC--------------CeEEEECCCCcCHHHHHHHHh
Confidence 4455667777653 569999999999999988763
No 238
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.54 E-value=5.3e-14 Score=156.38 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|+|+|..|+|||||+.+|+...+. ......+..++....+.+.. ....|+||||||+..|. +
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~--------------~~~~l~i~Dt~G~~~~~--~ 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG--------------EESTLVVIDHWEQEMWT--E 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC--------------EEEEEEEEeCCCcchHH--H
Confidence 4899999999999999999866553 11111111111111111111 11348999999998443 3
Q ss_pred Hhccc-ccceeEEEeeccCCCCHHHH-HHHHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 875 SRGSG-LCDIAILVVDIMHGLEPQTI-ESLNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 875 ~rg~~-~aDiaILVVDa~~Gv~~QT~-E~l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
...+. .+|++|||+|+++.-..... .++..+.. .++|+|||+||+|+... ..+.
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~------~~v~-------------- 125 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS------REVS-------------- 125 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc------ceec--------------
Confidence 34455 89999999999885332222 22333333 36899999999998521 0000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.... ..+... ..+++++|||++|.||.+|+.+|+..+
T Consensus 126 ---~~~~-~~~a~~--------------~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 126 ---VQEG-RACAVV--------------FDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred ---HHHH-HHHHHH--------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 011110 124789999999999999999987655
No 239
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.53 E-value=4.3e-14 Score=142.12 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=100.0
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcc
Q 000625 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~ 878 (1384)
|+|++++|||||+++|.+..............+....+... .....++||||||+..+.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD--------------GKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC--------------CEEEEEEEEecCChHHHHhHHHHHh
Confidence 58999999999999999776521111111112211111110 0113589999999999988888889
Q ss_pred cccceeEEEeeccCCCCHHHHHHH-----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000625 879 GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
..+|++|+|+|++++....+...+ ......++|+||++||+|+... ......
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~-------~~~~~~---------------- 123 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE-------RVVSEE---------------- 123 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc-------cchHHH----------------
Confidence 999999999999987666655544 3334567999999999998621 100000
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
.....+.. ...++++++|+.+|.|+..++.+|.
T Consensus 124 ~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 124 ELAEQLAK--------------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHh--------------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 00011111 1346899999999999999998874
No 240
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.53 E-value=7.1e-14 Score=169.83 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=103.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
+.|+|+|++|+|||||+++|++... .....+|+|.++....+.+. ...++||||||+..+...
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~----------------g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN----------------GILIKLLDTAGIREHADF 267 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC----------------CEEEEEeeCCCcccchhH
Confidence 4599999999999999999997643 23445666766443333222 234899999998665432
Q ss_pred --------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000625 874 --------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 874 --------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
...++..+|++|||+|++++...+.. +|..+...++|+|||+||+|+.. .+.
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~-------~~~------------ 327 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI-------NSL------------ 327 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC-------cch------------
Confidence 23567889999999999988776665 56666667899999999999852 000
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
. .+... ..+++|+|||++ .||.+++..|...+.
T Consensus 328 -------~----~~~~~--------------~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -------E----FFVSS--------------KVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -------h----hhhhh--------------cCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 0 01000 013688999998 599999988876543
No 241
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.52 E-value=1.3e-13 Score=148.91 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|+.|+|||||+++|....+.....+.+...+.. .+.... ....+++|||||+..|..++.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--------------~~~~l~i~Dt~g~~~~~~~~~ 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDG--------------KPVQLALWDTAGQEEYERLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECC--------------EEEEEEEEECCCChhccccch
Confidence 48999999999999999998665543222222111110 000000 012488999999999987777
Q ss_pred hcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
..++.+|++|+|+|+++.-..+... ++..++. ..+|+|||+||+|+...- .. ...... ..+..
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~----~~-~~~~~~-------~~~~~- 134 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA----VA-KEEYRT-------QRFVP- 134 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc----cc-cccccc-------CCcCC-
Confidence 7788999999999997643333332 2333332 369999999999985310 00 000000 00000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
........... +.+++|.|||++|.||.+++.+|...
T Consensus 135 ~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 135 IQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 00011111111 23479999999999999999998753
No 242
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-13 Score=148.22 Aligned_cols=161 Identities=20% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+++|.+++|||+||.+|....+.......|.+++-...+..+.. .-.+.+|||.|++.|..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~--------------~i~lQiWDtaGQerf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK--------------KIKLQIWDTAGQERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe--------------EEEEEEEEcccchhHHH
Confidence 3345999999999999999999987776555444444433332222221 12499999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+...+++.|+++|||+|+++......+..| ..+. ..++|+|+|.||+|+... +. +..+.
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----R~-------------V~~e~ 139 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----RQ-------------VSKER 139 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc----cc-------------ccHHH
Confidence 999999999999999999875443333322 3333 247999999999998520 10 11111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+ -....++| ++|+.|||++|.||.+.+..|...+..
T Consensus 140 g------e~lA~e~G---------------~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 G------EALAREYG---------------IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred H------HHHHHHhC---------------CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 1 11222333 589999999999999998888765543
No 243
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=1.6e-13 Score=151.55 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
....|+|+|+.|+|||||+.+++...+......++...+....+.... ....|.+|||||+..|..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------~~i~i~~~Dt~g~~~~~~ 73 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC--------------GPICFNVWDTAGQEKFGG 73 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC--------------eEEEEEEEECCCchhhhh
Confidence 335699999999999999998876655433333332222222211110 012489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHH-HHH--hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLK--MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk--~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++...+..++++|+|+|+++....++...|. .+. ..++|+++++||+|+... ...
T Consensus 74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~-----~~~----------------- 131 (215)
T PTZ00132 74 LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDR-----QVK----------------- 131 (215)
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc-----cCC-----------------
Confidence 9988889999999999998866655554442 221 246899999999998521 000
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+.. ..+.++++||++|.||..++.+|...
T Consensus 132 ---~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 132 ---ARQITFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred ---HHHHHHHHH---------------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 000111111 12478999999999999988887654
No 244
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.51 E-value=5.9e-14 Score=153.73 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=116.8
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcc---------------------------------------cccccCceeE
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNV---------------------------------------QEGEAGGITQ 829 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v---------------------------------------~~ge~gGITq 829 (1384)
...-|+++|+|+|..|+||||++.+|..... .-|..|||+.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 3445677899999999999999999963221 1223344443
Q ss_pred eeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-cchhHHH-------HhcccccceeEEEeeccCCCCHHHHH-
Q 000625 830 QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNLR-------SRGSGLCDIAILVVDIMHGLEPQTIE- 900 (1384)
Q Consensus 830 ~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH-e~F~~~r-------~rg~~~aDiaILVVDa~~Gv~~QT~E- 900 (1384)
.+..+...++........ .-....+.||||||+ +.|+-.. ....+..-++++|||......|.|.-
T Consensus 94 sLNLF~tk~dqv~~~iek-----~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS 168 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEK-----RAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS 168 (366)
T ss_pred hHHHHHHHHHHHHHHHHH-----hhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH
Confidence 332222111100000000 001135899999996 4453111 12233456789999987766666553
Q ss_pred ----HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHcCCchhhhhcccCC
Q 000625 901 ----SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM-RLVQIVTQLKEQGMNTELYYKNKDR 975 (1384)
Q Consensus 901 ----~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~-~i~~I~~~L~~~Gl~~e~~~~~~d~ 975 (1384)
...+|....+|+|||+||+|+. ...|...+..-.+..+..+.. .-.-+...+....|..+-||
T Consensus 169 NMlYAcSilyktklp~ivvfNK~Dv~-------d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY----- 236 (366)
T KOG1532|consen 169 NMLYACSILYKTKLPFIVVFNKTDVS-------DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY----- 236 (366)
T ss_pred HHHHHHHHHHhccCCeEEEEeccccc-------ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-----
Confidence 3456677889999999999996 456665555444433333332 11112222222233334444
Q ss_pred CCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000625 976 GETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 976 g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
..+.+|.||++||.|++++|..+...+..+
T Consensus 237 -~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 237 -RSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred -hhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 346899999999999999998887665443
No 245
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=1.8e-13 Score=142.98 Aligned_cols=155 Identities=20% Similarity=0.207 Sum_probs=104.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+|+|+.++|||||+.+|.+..+.......+..+.....+..... ...|.||||||+..|..++..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~l~i~D~~g~~~~~~~~~~ 67 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK--------------PVNLEIWDTSGQERFDSLRDI 67 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE--------------EEEEEEEEETTSGGGHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc--------------ccccccccccccccccccccc
Confidence 899999999999999999987766544443322222222222110 124899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH-HHHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESL-NLLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l-~llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.+..+|++|||+|.++.-.......| ..+. ..++|+||+.||.|+...+ ..+.
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~----~v~~------------------- 124 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER----EVSV------------------- 124 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS----SSCH-------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccccc----cchh-------------------
Confidence 99999999999999874322222222 2222 2358999999999986311 1110
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+......+ + ++++.+||++|.||.++|..|+..+
T Consensus 125 ~~~~~~~~~~--------------~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 125 EEAQEFAKEL--------------G-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHT--------------T-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHh--------------C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111122222 1 6999999999999999998887644
No 246
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.7e-14 Score=166.46 Aligned_cols=237 Identities=19% Similarity=0.293 Sum_probs=147.8
Q ss_pred CCccCCCCccccccCCCCEE-EEEcCCCCCHHHHHHHHHcC--ccc-ccccCceeEeeeeeEecccccccchhhcccccc
Q 000625 778 EPEVDATPKQAEENLRSPIC-CIMGHVDTGKTKLLDCIRGT--NVQ-EGEAGGITQQIGATYFPAENIRERTRELKANAT 853 (1384)
Q Consensus 778 ~r~~sa~a~~s~~~~R~piV-~IlGhvdsGKTTLLd~L~~t--~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~ 853 (1384)
...+.+...+.+....+|+| +|||++|+|||||+..|... ... ..-.|.||.-.|
T Consensus 52 kklhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg--------------------- 110 (1077)
T COG5192 52 KKLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG--------------------- 110 (1077)
T ss_pred hccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec---------------------
Confidence 44556667778888777765 59999999999999998632 111 111233333222
Q ss_pred cCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEE-EEeecccccCcccCCCch
Q 000625 854 LKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRLYGWKTCRNAP 932 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiDl~~~w~~~~~a~ 932 (1384)
+.+.|+|+.||. + .+.+...+..+|++||+||++-|+...|.++|++|..+|.|.|+ |+|.+|+.. +.+
T Consensus 111 -K~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk------~~s 180 (1077)
T COG5192 111 -KTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK------NPS 180 (1077)
T ss_pred -ceeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc------ChH
Confidence 124599999993 3 44555678899999999999999999999999999999999776 899999862 222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhH-HHHHHHHHHHHHHHhh
Q 000625 933 IVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDL-LLLLVQWTQKTMVEKL 1011 (1384)
Q Consensus 933 ~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eL-l~~L~~~~~~~l~e~l 1011 (1384)
+|.....++..+|+..+++- .-+|.+|.+.+--.++- +-.|..++.-.-...|
T Consensus 181 ---tLr~~KKrlkhRfWtEiyqG-----------------------aKlFylsgV~nGRYpDreilnLsRfisVMKfRPl 234 (1077)
T COG5192 181 ---TLRSIKKRLKHRFWTEIYQG-----------------------AKLFYLSGVENGRYPDREILNLSRFISVMKFRPL 234 (1077)
T ss_pred ---HHHHHHHHHhhhHHHHHcCC-----------------------ceEEEecccccCCCCCHHHHHHHHHHhhhccccc
Confidence 34444456666665543322 24455555433222221 1112222211111111
Q ss_pred hccc-----------ccceE-EEEEEEEcCcceEEEEEEEe-eeecCCCEEEEccCCCceeEEeeeccCCCCC
Q 000625 1012 TFRN-----------ELQCT-VLEVKVIEGHGTTIDVVLVN-GVLHEGDQIVVCGLQGPIVTTIRALLTPHPM 1071 (1384)
Q Consensus 1012 ~~~~-----------~~~~~-VlEvk~~~G~G~vi~~iV~~-G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~ 1071 (1384)
.+.+ .+..+ .++-...-|+-.+++|.|.. |..+....|+|+|.+...+..|..|.+|+|.
T Consensus 235 ~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp 307 (1077)
T COG5192 235 EWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPP 307 (1077)
T ss_pred ccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCC
Confidence 1111 11111 11111223556678888875 5556666799999998889999999999983
No 247
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.48 E-value=1.2e-13 Score=173.25 Aligned_cols=146 Identities=25% Similarity=0.294 Sum_probs=103.1
Q ss_pred cCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH------H
Q 000625 801 GHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL------R 874 (1384)
Q Consensus 801 GhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~------r 874 (1384)
|.+|+|||||+++|++.++..+..+|+|.+.....+.+.. ..++||||||+.+|... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~----------------~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG----------------EDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC----------------eEEEEEECCCccccCccchHHHHH
Confidence 8899999999999998887777788888776544443321 34899999999988643 2
Q ss_pred Hhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 875 SRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 875 ~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
... ...+|++|+|+|+++. ......+..+...++|+|||+||+|+... ..+. ..
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~------~~i~---------------~d- 120 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEK------KGIR---------------ID- 120 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHh------CCCh---------------hh-
Confidence 222 2468999999999872 23445555666788999999999998521 0000 00
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
...+... + .+++++|||++|.||++|++.+....
T Consensus 121 ---~~~L~~~------------l--g~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 ---EEKLEER------------L--GVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---HHHHHHH------------c--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 0111111 1 25899999999999999999987653
No 248
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.48 E-value=3.1e-13 Score=142.38 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeE--ecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATY--FPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~--~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
.|+|+|+.++|||||+.+++...+.....+ ..+.+. +.+.. ....+.||||+|...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~----~~~~~~~~i~~~~--------------~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP----EGGRFKKEVLVDG--------------QSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC----CccceEEEEEECC--------------EEEEEEEEECCCCCch---
Confidence 489999999999999999987655432111 011111 11110 0124899999999753
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHH-HHHHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+.+..+|++|||+|.++.-..+.... +..+.. .++|+|||.||+|+... +...+ ..
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~----~~~~v-----------~~-- 121 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES----NPRVI-----------DD-- 121 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc----CCccc-----------CH--
Confidence 34567899999999998665555433 333332 35899999999997410 00000 00
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.....|... ...++|++|||++|.||.++|..++.
T Consensus 122 -----~~~~~~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 122 -----ARARQLCAD-------------MKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred -----HHHHHHHHH-------------hCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 001112211 02368999999999999999988764
No 249
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.44 E-value=1e-12 Score=146.59 Aligned_cols=112 Identities=23% Similarity=0.332 Sum_probs=80.3
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
.....+.+|+|+|++|+|||||++.|+..... ..++...|.+++. ......|+|+||||+.
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~----~~~~~~~g~i~i~---------------~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTK----QNISDIKGPITVV---------------TGKKRRLTFIECPNDI 94 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhccc----CccccccccEEEE---------------ecCCceEEEEeCCchH
Confidence 33445567999999999999999999754211 0011111111110 0112459999999974
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEE-EEeecccc
Q 000625 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIV-ALNKVDRL 922 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IV-aINKiDl~ 922 (1384)
..+...+..+|++|||+|+..|+..++..+|..+...++|.+| |+||+|++
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 3334557889999999999999999999999999999999655 99999986
No 250
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=1.9e-12 Score=141.45 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHH-HHHcCccccccc-CceeEeeee---eEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 796 ICCIMGHVDTGKTKLLD-CIRGTNVQEGEA-GGITQQIGA---TYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd-~L~~t~v~~ge~-gGITq~iga---~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.|+|+|+.++|||||+. ++.+..+..+.. ......+|. +.............+ .-....|.||||+|+..+
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~----~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV----DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee----CCEEEEEEEEeCCCChhh
Confidence 59999999999999996 554433321110 111112221 000000000000000 001135999999998763
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHH--HHHHHHh--cCCceEEEEeecccc
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIE--SLNLLKM--RNTEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E--~l~llk~--~~vP~IVaINKiDl~ 922 (1384)
++..+++.+|++|||+|+++....+... ++..++. .++|+|||+||+|+.
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 4556788999999999998755444442 2333433 368999999999985
No 251
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.42 E-value=4.2e-12 Score=138.69 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=103.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh---
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT--- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~--- 871 (1384)
+.|+|+|++|+|||||+++|++...... +.++. +....+.... .+.. -..+.++||||||...+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~--~~~~~--~~~~~t~~~~-----~~~~---~~~~~l~l~DtpG~~~~~~~~ 69 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEE--GAAPT--GVVETTMKRT-----PYPH---PKFPNVTLWDLPGIGSTAFPP 69 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCC--Ccccc--CccccccCce-----eeec---CCCCCceEEeCCCCCcccCCH
Confidence 4699999999999999999997543211 11111 1000000000 0000 012469999999975321
Q ss_pred --HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHH-hhHHHHHHH
Q 000625 872 --NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQ-QNTDVQNEF 948 (1384)
Q Consensus 872 --~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~-q~~~v~~ef 948 (1384)
.++..++..+|++|||.+ ..+......++..++..+.|+|||+||+|+.. ++... ..... ....+...+
T Consensus 70 ~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~-----~~~~~-~~~~~~~~~~~l~~i 141 (197)
T cd04104 70 DDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL-----SNEQR-SKPRSFNREQVLQEI 141 (197)
T ss_pred HHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh-----hhhhc-cccccccHHHHHHHH
Confidence 133445677899888754 45777777788888888999999999999841 11100 00000 000111111
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc--CCCChhhHHHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI--SGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~--tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+...+...|+ ...+|+.+|+. .+.|++.|...|...++.
T Consensus 142 ---~~~~~~~~~~~~~------------~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 142 ---RDNCLENLQEAGV------------SEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred ---HHHHHHHHHHcCC------------CCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1223333333332 23589999999 789999999988877664
No 252
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.1e-12 Score=160.96 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=109.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~- 873 (1384)
..|+++|++|+|||||+|+|++.+...+..+|+|...-.-.+.+. .+.|+|+|+||..+++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~----------------~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK----------------GHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec----------------CceEEEEeCCCcCCCCCCC
Confidence 459999999999999999999999999999999987655444433 245999999997776432
Q ss_pred -----HHhcc--cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 874 -----RSRGS--GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 874 -----r~rg~--~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
..+++ ..+|++|.||||++ + ......--+|...++|+|+++|.+|..... +-
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn-L-eRnLyltlQLlE~g~p~ilaLNm~D~A~~~----Gi--------------- 126 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN-L-ERNLYLTLQLLELGIPMILALNMIDEAKKR----GI--------------- 126 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch-H-HHHHHHHHHHHHcCCCeEEEeccHhhHHhc----CC---------------
Confidence 22222 34799999999976 2 233334456677899999999999974110 00
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
......+. .. + .+|+||+||.+|.|+++|+..+....+
T Consensus 127 --~ID~~~L~---~~-------------L--GvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 127 --RIDIEKLS---KL-------------L--GVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred --cccHHHHH---HH-------------h--CCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 00001111 11 1 279999999999999999998876543
No 253
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.42 E-value=2.2e-12 Score=144.62 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=55.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-----
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF----- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F----- 870 (1384)
.|+|+|++++|||||+++|++.....+...+.|.......+. +....|++|||||+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~----------------~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLE----------------YKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEE----------------ECCeEEEEEECCCcccccccch
Confidence 489999999999999999997754433333333222111111 12235899999997532
Q ss_pred --hHHHHhcccccceeEEEeeccCC
Q 000625 871 --TNLRSRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 871 --~~~r~rg~~~aDiaILVVDa~~G 893 (1384)
...+...++.+|++|+|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 23445678899999999998753
No 254
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.3e-12 Score=131.78 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=109.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
++|+|+.|+|||+||.++....+.+.....|...+|.-.+.+.. +.-.|.||||.|++.|......
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg--------------K~vKLQIWDTAGQErFRSVtRs 77 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG--------------KTVKLQIWDTAGQERFRSVTRS 77 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC--------------cEEEEEEeecccHHHHHHHHHH
Confidence 78999999999999999998877766555666666655544432 1135999999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-+++||+|++..-....+..| +.+...++-+|+|.||-|+... +...|.
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~----R~Vtfl------------------ 135 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE----REVTFL------------------ 135 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh----hhhhHH------------------
Confidence 99999999999999875544444444 3444456778889999998521 111111
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
+...+.. ...+.++.+||+||+|+.+.|-....
T Consensus 136 -EAs~Faq---------------Enel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 136 -EASRFAQ---------------ENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred -HHHhhhc---------------ccceeeeeecccccccHHHHHHHHHH
Confidence 0111111 12357899999999999988766543
No 255
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.3e-12 Score=131.29 Aligned_cols=165 Identities=19% Similarity=0.143 Sum_probs=115.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.+.|||+..+||||||-+.+...++....+.+..+.-+-.+-... +-..+.||||.|++.|..+..
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~--------------kRiklQiwDTagqEryrtiTT 88 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD--------------KRIKLQIWDTAGQERYRTITT 88 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc--------------cEEEEEEEecccchhhhHHHH
Confidence 489999999999999999998877654433333332211111110 012499999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.++++||++|+++.-.....+.|- ++ .-.+.|+|+|.||||+-.. +--+
T Consensus 89 ayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e----Rvis------------------- 145 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE----RVIS------------------- 145 (193)
T ss_pred HHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc----eeee-------------------
Confidence 9999999999999998754444444432 22 3357999999999998521 1100
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhh
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT 1012 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~ 1012 (1384)
.........+.|| .+|.+||+.+.|+.+++..|+..+...|.+.+.
T Consensus 146 ~e~g~~l~~~LGf---------------efFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 146 HERGRQLADQLGF---------------EFFETSAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHHHhCh---------------HHhhhcccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 1122233333343 689999999999999999999888888877553
No 256
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=155.34 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL- 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~- 873 (1384)
.|+|+|.||+|||||||+|++.... ....+|+|.++--.++..+ +..+.|+||.|...-...
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~----------------G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN----------------GIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC----------------CEEEEEEecCCcccCccHH
Confidence 4899999999999999999987643 3445667776644444433 345999999995432221
Q ss_pred ------H-HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 874 ------R-SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 874 ------r-~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
| ...+..||+++||+|+++++..+....+. +...+.|+|+|+||+|+...|..
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~------------------- 342 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL------------------- 342 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc-------------------
Confidence 2 23466799999999999987777777766 55667899999999999743210
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
. .+ . +....+++++||+||+||..|...|..++.
T Consensus 343 ------~----~~-~-------------~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 343 ------E----SE-K-------------LANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ------c----hh-h-------------ccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 00 0 012348999999999999999998876654
No 257
>PRK09866 hypothetical protein; Provisional
Probab=99.40 E-value=4e-12 Score=154.98 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCEEEEeCCCCcc-----hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC--CceEEEEeecccccCcccCC
Q 000625 857 PGLLVIDTPGHES-----FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN--TEFIVALNKVDRLYGWKTCR 929 (1384)
Q Consensus 857 ~~i~~IDTPGHe~-----F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~--vP~IVaINKiDl~~~w~~~~ 929 (1384)
.+|.||||||... +..++...+..+|++|||||+..++.+.....++.++..+ .|+|+|+||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr----- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR----- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc-----
Confidence 4699999999432 4445667899999999999999988888888889898877 599999999998621
Q ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 930 NAPIVKAIKQQNTDVQNEFNMRLVQIV-TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 930 ~a~~~~~l~~q~~~v~~ef~~~i~~I~-~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+.... +...+ ..|...++ .+..||||||++|.|+..|+..|..
T Consensus 305 eeddkE~---------------Lle~V~~~L~q~~i------------~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQ---------------VRALISGTLMKGCI------------TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHH---------------HHHHHHHHHHhcCC------------CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 1111111 11111 12222221 2357999999999999999998865
No 258
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=132.51 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL 873 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~ 873 (1384)
...|.|+|..|+||||||-+|....+.......|..++-..++.+...+ ..+.||||+|++.|..+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~--------------~KlaiWDTAGqErFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR--------------LKLAIWDTAGQERFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce--------------EEEEEEeccchHhhhcc
Confidence 4559999999999999999999888877666556555554444443322 35999999999999999
Q ss_pred HHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 874 RSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 874 r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
...+++.+-++|||+|.+..-..-.+.+|. .+.. .++-.++|.||||.... +-.+
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~----R~V~---------------- 136 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE----RVVD---------------- 136 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc----cccc----------------
Confidence 999999999999999998754444444442 2222 34567789999997411 1000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+ .+-+.+...+ .+-|+.+||+|.+|+...|..|+..+
T Consensus 137 --r-eEG~kfAr~h---------------~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 137 --R-EEGLKFARKH---------------RCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred --H-HHHHHHHHhh---------------CcEEEEcchhhhccHHHHHHHHHHHH
Confidence 0 0111122222 36799999999999999988876543
No 259
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.4e-12 Score=128.19 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|+.|+|||+|+.+++.+-++.|....|..++-.-.+.++.. ...+.||||.|++.|.+...
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge--------------kiklqiwdtagqerfrsitq 74 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE--------------KIKLQIWDTAGQERFRSITQ 74 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe--------------EEEEEEeeccchHHHHHHHH
Confidence 3899999999999999999988887665433332221111111110 12489999999999999999
Q ss_pred hcccccceeEEEeeccCCCC----HHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLE----PQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~----~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.+++.++.+|||+|++.... |..+.-|......++--|+|.||+|+... + .+
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr---------r--------ev------- 130 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR---------R--------EV------- 130 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh---------h--------hh-------
Confidence 99999999999999987544 33333333334456777999999998520 0 01
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+|-..|...- +.-|+.+||+..+|+..|+..|...+
T Consensus 131 p~qigeefs~~q--------------dmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 131 PQQIGEEFSEAQ--------------DMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hHHHHHHHHHhh--------------hhhhhhhcccchhhHHHHHHHHHHHH
Confidence 112222333221 12467899999999999987775444
No 260
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.37 E-value=1.6e-12 Score=122.87 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=67.8
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000625 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
+|+ ++.+.||||+|++|.|++|+.|++ |+++++|.|+|.||++++++|.+|.+|++|||.|.+++ +|.
T Consensus 8 vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~----------d~~ 77 (84)
T cd03692 8 VFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN----------DIK 77 (84)
T ss_pred EEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc----------cCC
Confidence 554 345789999999999999999997 88999999999999999999999999999999999875 689
Q ss_pred CCCeEEE
Q 000625 1342 IEDELVS 1348 (1384)
Q Consensus 1342 ~~d~l~s 1348 (1384)
.||+|.|
T Consensus 78 ~Gdvi~~ 84 (84)
T cd03692 78 VGDIIEA 84 (84)
T ss_pred CCCEEEC
Confidence 9999864
No 261
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=129.31 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
.+|+|.+++|||+|+-+++...++......|..++-.-.++.+..+ -.|.||||.|++.|..+...
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~--------------VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDR--------------VKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 5899999999999999999887775543333333222223322111 24999999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHH-HHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
+++.++++|+|+|.+.|-......- |..++.. .+|-|+|.||.|.+. +.. +. ..
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-----Rrv-----V~-------------t~ 133 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-----RRV-----VD-------------TE 133 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-----cee-----ee-------------hH
Confidence 9999999999999999866554443 3444432 478999999999862 111 00 01
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....+... ..+.+|.+||+..+|+..+|..|.....
T Consensus 134 dAr~~A~~---------------mgie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 134 DARAFALQ---------------MGIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred HHHHHHHh---------------cCchheehhhhhcccchHHHHHHHHHHH
Confidence 11112222 3368999999999999999988876543
No 262
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.37 E-value=6.8e-12 Score=138.17 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+|+|..|+|||||+.+|.+..+..+...+++..+.......... ...+.+|||+|+..|..++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHHHH
Confidence 45999999999999999999998887666655554443332221100 1238999999999999999
Q ss_pred HhcccccceeEEEeeccC--CCCHHHHHHHHHHHhc---CCceEEEEeeccccc
Q 000625 875 SRGSGLCDIAILVVDIMH--GLEPQTIESLNLLKMR---NTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~--Gv~~QT~E~l~llk~~---~vP~IVaINKiDl~~ 923 (1384)
..++..++++|+|+|... ++..-+..++..+... ++|+|++.||+|+..
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 999999999999999985 3344444444455543 489999999999963
No 263
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=3.6e-12 Score=136.11 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=113.5
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|+++|.+++|||-||.++....+......+|...++...+..+. +.-..+||||.|++.|......
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~--------------k~vkaqIWDTAGQERyrAitSa 82 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG--------------KTVKAQIWDTAGQERYRAITSA 82 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC--------------cEEEEeeecccchhhhccccch
Confidence 88999999999999999998887766666665555443333221 1124789999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-+|+||+|++...+.+... +|..|+. .++++++|.||+||..- ... .
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-raV-----------------------~ 138 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-RAV-----------------------P 138 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-ccc-----------------------c
Confidence 999999999999998755444333 3455654 46899999999998520 000 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
.+-...+++. ....|+.+||+.+.|+...+..++..+...+..
T Consensus 139 te~~k~~Ae~--------------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 139 TEDGKAFAEK--------------EGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred hhhhHhHHHh--------------cCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 1111122221 224899999999999999998777655544433
No 264
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.36 E-value=2.8e-12 Score=127.71 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=74.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc------
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES------ 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~------ 869 (1384)
|+|+|.+++|||||+++|++.+. ..+...+.|.++....+.+. ...+.|+||||...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~----------------~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN----------------NKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET----------------TEEEEEEESSSCSSSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec----------------eeeEEEEeCCCCcccchhhH
Confidence 89999999999999999997543 33444555555522222221 23478999999643
Q ss_pred ---hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEee
Q 000625 870 ---FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 870 ---F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
+.....+.+..+|++|+|||+.+....+....++.|+ .+.|+|+|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 2223445568899999999988854555666777776 88999999998
No 265
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.33 E-value=1e-11 Score=127.59 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.|+|..|+|||||+.+|.+.... +|...+|...-. ..++...|+|||..|+..+.+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Ikt--------------l~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKT--------------LEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEE--------------EEecceEEEEEEcCCcchhHH
Confidence 3455999999999999999999865421 222222211110 123345699999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHH----hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK----MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk----~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++..+|++|+|||.++.. +.++...|..|. ..+.|++|+.||.|+.+...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~--------------------- 134 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS--------------------- 134 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------------------
Confidence 9999999999999999998753 345555555442 36789999999999863210
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+.|...+. + ..+.. ...+++|-|||.||+++..-+.||+.-
T Consensus 135 ----~~~i~~~~~---L--~~l~k----s~~~~l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 135 ----LEEISKALD---L--EELAK----SHHWRLVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred ----HHHHHHhhC---H--HHhcc----ccCceEEEEeccccccHHHHHHHHHHH
Confidence 011111110 0 01111 235699999999999988777777643
No 266
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=138.21 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
+-.|.|+|.|++|+|||||+.+|++..+.....+.+| .++|.+...+ ..|++|||||.-+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~------------------~R~QvIDTPGlLD 227 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY------------------LRIQVIDTPGLLD 227 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC------------------ceEEEecCCcccC
Confidence 3445699999999999999999998775544445455 4455443332 2499999999533
Q ss_pred --hh--H----HHHhcc-cccceeEEEeeccC--CCCHHHHH-HHHHHHh-cCCceEEEEeecccccCcccCCCchHHHH
Q 000625 870 --FT--N----LRSRGS-GLCDIAILVVDIMH--GLEPQTIE-SLNLLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 870 --F~--~----~r~rg~-~~aDiaILVVDa~~--Gv~~QT~E-~l~llk~-~~vP~IVaINKiDl~~~w~~~~~a~~~~~ 936 (1384)
+. | ....++ .+.+++||++|.+. |....-.. .|..++. .+.|+|+|+||+|..+.|
T Consensus 228 RPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e----------- 296 (346)
T COG1084 228 RPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE----------- 296 (346)
T ss_pred CChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh-----------
Confidence 21 1 111222 34788999999975 44432222 2333332 457999999999986321
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000625 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 937 l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.+..+...+...|. ...+.+|+..+.+++.+...+.......+
T Consensus 297 --------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 297 --------------KLEEIEASVLEEGG--------------EEPLKISATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred --------------HHHHHHHHHHhhcc--------------ccccceeeeehhhHHHHHHHHHHHhhchh
Confidence 22333333433332 23466788889998887777665544433
No 267
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.30 E-value=1.3e-11 Score=135.46 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+|+|..++|||||+.+|.+..+......+|..++....+.+.... ..-....|.||||+|++.|..++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~---------~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGT---------PEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCC---------CCCcEEEEEEEecCCchhHHHHHH
Confidence 48999999999999999999887765444433322221112111000 000012489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHH-HHHHh----------------------cCCceEEEEeecccc
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESL-NLLKM----------------------RNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~----------------------~~vP~IVaINKiDl~ 922 (1384)
..++.+|++|||+|.++.-..+.+..| ..+.. .++|+|||.||+|+.
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999999999999986554444444 22221 258999999999986
No 268
>PRK13768 GTPase; Provisional
Probab=99.28 E-value=2e-11 Score=138.71 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCEEEEeCCCCcchhH---HH---Hhcccc--cceeEEEeeccCCCCHHHHHHHHHHH-----hcCCceEEEEeeccccc
Q 000625 857 PGLLVIDTPGHESFTN---LR---SRGSGL--CDIAILVVDIMHGLEPQTIESLNLLK-----MRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~---~r---~rg~~~--aDiaILVVDa~~Gv~~QT~E~l~llk-----~~~vP~IVaINKiDl~~ 923 (1384)
..+.||||||+..+.. .. .+.+.. ++++|+|||+.++..+.+.....++. ..++|+|+|+||+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 3699999999766432 21 122222 89999999999988888877665543 56899999999999873
Q ss_pred CcccCCCchHHHHHHHhhH---HHHHHHHH-------HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChh
Q 000625 924 GWKTCRNAPIVKAIKQQNT---DVQNEFNM-------RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 924 ~w~~~~~a~~~~~l~~q~~---~v~~ef~~-------~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~ 993 (1384)
.... ..+..... .+...+.. ....+...+.. ++...++|++||+++.|+.
T Consensus 177 ------~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-------------~~~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 177 ------EEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-------------TGLPVRVIPVSAKTGEGFD 236 (253)
T ss_pred ------chhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-------------HCCCCcEEEEECCCCcCHH
Confidence 1111 11111111 11111110 11112222222 2234589999999999999
Q ss_pred hHHHHHHHHH
Q 000625 994 DLLLLLVQWT 1003 (1384)
Q Consensus 994 eLl~~L~~~~ 1003 (1384)
+|+.+|..++
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9999987655
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=135.35 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=115.6
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES- 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~- 869 (1384)
...+.+|.|||.+|+|||||+|+|..+++..-. ++|+..-+.... ...+....++||||||..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------~vg~~t~~~~~~---------~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------KVGVGTDITTRL---------RLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------ecccCCCchhhH---------HhhccccceEEecCCCcccc
Confidence 345556779999999999999999976654222 222221111100 1123335799999999766
Q ss_pred ------hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh--cCCceEEEEeeccc---ccCcccCCCchHHHHHH
Q 000625 870 ------FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM--RNTEFIVALNKVDR---LYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 ------F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~--~~vP~IVaINKiDl---~~~w~~~~~a~~~~~l~ 938 (1384)
+..+....+...|++++++++.+..-.....+|+.+.. ++.|+|++||.+|+ +++|....+.+..
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~---- 176 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSP---- 176 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCH----
Confidence 67777778888999999999998777677777776654 34799999999997 3567654333211
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.+.+-+..+...+...+. ...|+|.+|+.+++||..|+..|+..++
T Consensus 177 ----a~~qfi~~k~~~~~~~~q----------------~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 177 ----AIKQFIEEKAEALGRLFQ----------------EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHHHHHHHHHh----------------hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111111222222222221 2348999999999999999998887654
No 270
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-11 Score=130.13 Aligned_cols=155 Identities=23% Similarity=0.209 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|--++||||+|.+|....+... .++|. ...-.+ .|++..+++||..|+..+..++.
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v----------------~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETV----------------EYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEE----------------EEcceEEEEEecCCCcccccchh
Confidence 489999999999999999976554422 12111 111111 23345699999999999999999
Q ss_pred hcccccceeEEEeeccCCCC-HHHHH-HHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLE-PQTIE-SLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~-~QT~E-~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
.++..++++|||||+++... +.+.+ ..+++.. .++|++|+.||.|+++.-
T Consensus 80 ~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al------------------------- 134 (181)
T KOG0070|consen 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL------------------------- 134 (181)
T ss_pred hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------------------------
Confidence 99999999999999988421 22333 3344433 468999999999997421
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
....|...|....+.. ....|-.++|.+|+|+.+-+++|...+.
T Consensus 135 s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 135 SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1223444444444432 3347889999999999999999876543
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=99.26 E-value=2.3e-11 Score=140.52 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
.....|+|||+.++|||||+.+|++..+......+|...+....+.+.........+... ......|.||||+|++.|.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d-~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGD-SERDFFVELWDVSGHERYK 97 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccccccc-CCceEEEEEEECCCChhhh
Confidence 444569999999999999999999877654443443333222212211100000000000 0011248999999999999
Q ss_pred HHHHhcccccceeEEEeeccCCCCHHHHHH-HHHHHhc---------------CCceEEEEeecccc
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMR---------------NTEFIVALNKVDRL 922 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~---------------~vP~IVaINKiDl~ 922 (1384)
.++..+++.+|++|||+|+++.-....+.. +..+... ++|+|||.||+|+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 999999999999999999987433323322 2333321 48999999999985
No 272
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.25 E-value=3e-11 Score=135.78 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=94.2
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|.+||.+++||||||++|.... |..+...++..+||.+++..- ..|++-|.||...
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-----------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-----------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-----------------ceeEeccCcccccccccc
Confidence 7899999999999999998654 444555555566774332211 2399999999321
Q ss_pred --hhHHHHhcccccceeEEEeeccCC---CCHHHHHH-HHHHHhc-----CCceEEEEeecccccCcccCCCchHHHHHH
Q 000625 870 --FTNLRSRGSGLCDIAILVVDIMHG---LEPQTIES-LNLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~G---v~~QT~E~-l~llk~~-----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
.--...|.+-.|++.+||||++.+ -.-|++.. +..|..+ ..|.+||+||||++.+ ..+
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea-----e~~------ 330 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA-----EKN------ 330 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH-----HHH------
Confidence 111223445569999999999887 22233322 2333332 4699999999998521 011
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.+..+...| ....|||+||++|+|+..|+..|-.
T Consensus 331 ------------~l~~L~~~l-----------------q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 331 ------------LLSSLAKRL-----------------QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ------------HHHHHHHHc-----------------CCCcEEEeeeccccchHHHHHHHhh
Confidence 112222112 1226999999999999999887643
No 273
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.24 E-value=2e-11 Score=123.97 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..|+++|..=+|||||+-++....|.......+ .+.|.... +.... .--.|+||||.|++.|-.+-
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----QASF~~kk--------~n~ed--~ra~L~IWDTAGQErfHALG 79 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----QASFQNKK--------VNVED--CRADLHIWDTAGQERFHALG 79 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----HHHHhhcc--------ccccc--ceeeeeeeeccchHhhhccC
Confidence 458999999999999999998776654332211 11111100 00000 01259999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH-HHHH-hcC--CceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL-NLLK-MRN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNM 950 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~llk-~~~--vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~ 950 (1384)
..+++.+|++|||+|+++.-..|-...| ..|+ +++ +.++||.||||+... + .-..+
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee----R------------~Vt~q---- 139 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE----R------------QVTRQ---- 139 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh----h------------hhhHH----
Confidence 9999999999999999998777777665 2332 333 788999999998521 0 00000
Q ss_pred HHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 951 RLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 951 ~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......... ...++.+||+.+.||.+||..|...
T Consensus 140 ---eAe~YAesv---------------GA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 140 ---EAEAYAESV---------------GALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred ---HHHHHHHhh---------------chhheecccccccCHHHHHHHHHHH
Confidence 000011111 1367899999999999999887643
No 274
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.24 E-value=9.7e-11 Score=127.76 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh--
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT-- 871 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~-- 871 (1384)
.|+|||++|+|||||+++|++..+.... ..+.|.++......+ ....|+||||||..++.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----------------~~~~i~viDTPG~~d~~~~ 65 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----------------DGRRVNVIDTPGLFDTSVS 65 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----------------CCeEEEEEECcCCCCccCC
Confidence 4999999999999999999987654222 345565544333322 23469999999976552
Q ss_pred -----HHHH----hcccccceeEEEeeccCCCCHHHHHHHHHHHhc-C----CceEEEEeecccc
Q 000625 872 -----NLRS----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR-N----TEFIVALNKVDRL 922 (1384)
Q Consensus 872 -----~~r~----rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~-~----vP~IVaINKiDl~ 922 (1384)
..+. .....+|++|||+++.+ +.......+..++.. + .++||++|+.|.+
T Consensus 66 ~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 66 PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 1111 23455799999999988 888888888777653 3 5889999999986
No 275
>COG2262 HflX GTPases [General function prediction only]
Probab=99.24 E-value=4.9e-11 Score=139.14 Aligned_cols=153 Identities=25% Similarity=0.319 Sum_probs=98.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccC-CCCEEEEeCCCCc---
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLK-VPGLLVIDTPGHE--- 868 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~-~~~i~~IDTPGHe--- 868 (1384)
.-|.|+++|.+++|||||+|+|++..+... .++.+|..|+.. ...+. ...++|-||-|+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~------d~LFATLdpttR----------~~~l~~g~~vlLtDTVGFI~~L 254 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA------DQLFATLDPTTR----------RIELGDGRKVLLTDTVGFIRDL 254 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc------ccccccccCcee----------EEEeCCCceEEEecCccCcccC
Confidence 345699999999999999999986554322 233333333211 01111 3469999999953
Q ss_pred ------chhHHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHH
Q 000625 869 ------SFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 869 ------~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
+|.+... -...+|++|+|||+++.. ..|-..+...|.. ..+|+|+|+||||++.+ ..
T Consensus 255 P~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~------~~------ 321 (411)
T COG2262 255 PHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED------EE------ 321 (411)
T ss_pred ChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc------hh------
Confidence 3444333 466799999999999863 2333334455555 45799999999998732 00
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+...+.. .. ...|++||++|+||+.|+..|...+..
T Consensus 322 ----------------~~~~~~~--------------~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ----------------ILAELER--------------GS-PNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ----------------hhhhhhh--------------cC-CCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 0001100 01 158999999999999999988776653
No 276
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.3e-11 Score=126.07 Aligned_cols=163 Identities=23% Similarity=0.227 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-ccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
..|+|+|.-++||||||.++-.... .-+.. .-||...|...-.. .+....+.|||..|+....
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--------------~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--------------EVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--------------eeccceeEEEEcCChHHHH
Confidence 3489999999999999999863321 11111 12333333221100 1112359999999999999
Q ss_pred HHHHhcccccceeEEEeeccCC--CCH---HHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 872 NLRSRGSGLCDIAILVVDIMHG--LEP---QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~G--v~~---QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
+++..++..|+++|+|||+++. ++. +-...+..=...++|+++.+||-|+.. +- .
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~-------~~-----~-------- 143 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN-------AM-----E-------- 143 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh-------hh-----h--------
Confidence 9999999999999999999883 221 112223333446899999999999852 10 0
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
...+..+.... + + ...++++|.||||++|+||.+-+.|++..+..
T Consensus 144 --~~El~~~~~~~-e--~---------~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 144 --AAELDGVFGLA-E--L---------IPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred --HHHHHHHhhhh-h--h---------cCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 01122222221 1 1 12467899999999999999999998876543
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.23 E-value=3.2e-11 Score=129.31 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+.|.|+|+|+.|+|||+|+.+|.+........ .+...++ +.+ . .-....+.|||+|||..+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t-S~e~n~~-~~~--~-------------~~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVT-SMENNIA-YNV--N-------------NSKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEE-CCG--S-------------STCGTCECEEEETT-HCCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeec-cccCCce-EEe--e-------------cCCCCEEEEEECCCcHHHHH
Confidence 35789999999999999999998764321111 1111111 111 0 01224699999999999876
Q ss_pred HHHh---cccccceeEEEeeccCCCCH---HHHHHHHH-H---H--hcCCceEEEEeecccc
Q 000625 873 LRSR---GSGLCDIAILVVDIMHGLEP---QTIESLNL-L---K--MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 873 ~r~r---g~~~aDiaILVVDa~~Gv~~---QT~E~l~l-l---k--~~~vP~IVaINKiDl~ 922 (1384)
.... ++..+-++|||||+.. +.. .+.++|.. | . ..++|++||+||.|+.
T Consensus 65 ~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 65 KLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp HHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred HHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 5544 3778999999999874 222 23333321 1 1 2468999999999986
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.23 E-value=1.8e-11 Score=121.80 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=69.8
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc----ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQ----EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~----~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|+|+|+.|+|||||+.+|++.... .....+.+..+....+.... ..+.|||++|+..|..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~~ 65 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR----------------QSLQFWDFGGQEEFYS 65 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE----------------EEEEEEEESSSHCHHC
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc----------------eEEEEEecCccceecc
Confidence 899999999999999999977655 11122222222222221111 1389999999998887
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-------HHHHh--cCCceEEEEeecc
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-------NLLKM--RNTEFIVALNKVD 920 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-------~llk~--~~vP~IVaINKiD 920 (1384)
.....+..+|++|||+|+++. .++..+ ..+.. .++|+|||.||.|
T Consensus 66 ~~~~~~~~~d~~ilv~D~s~~---~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 66 QHQFFLKKADAVILVYDLSDP---ESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp TSHHHHHHSCEEEEEEECCGH---HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccchhhcCcEEEEEEcCCCh---HHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 666668889999999999873 333332 22322 3599999999998
No 279
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.22 E-value=1.2e-10 Score=133.92 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=76.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc----------CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA----------GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDT 864 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~----------gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDT 864 (1384)
..|+|+|+.|+|||||+++|++..+..... ++++.......+..+.. ...|+||||
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~--------------~~~l~iiDT 70 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV--------------KLKLTVIDT 70 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE--------------EEEEEEEec
Confidence 469999999999999999999876643321 11111111111111110 024999999
Q ss_pred CCCcchhHH---------------------HH-----hccc--ccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEE
Q 000625 865 PGHESFTNL---------------------RS-----RGSG--LCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 865 PGHe~F~~~---------------------r~-----rg~~--~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
||+.++.+. .. ..+. .+|++|++|+++ +++.+..++.++.+.. ++|+|+|
T Consensus 71 pGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~V 149 (276)
T cd01850 71 PGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPV 149 (276)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEE
Confidence 997665331 11 1222 378899999876 5888888999999885 7999999
Q ss_pred Eeecccc
Q 000625 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
+||+|++
T Consensus 150 inK~D~l 156 (276)
T cd01850 150 IAKADTL 156 (276)
T ss_pred EECCCcC
Confidence 9999986
No 280
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=8e-11 Score=117.26 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
..|+|..|+|||+||..+....+.......|...+|.-.+.+.... ..+.||||.|++.|......
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqk--------------iklqiwdtagqerfravtrs 79 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK--------------IKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcE--------------EEEEEeecccHHHHHHHHHH
Confidence 4789999999999999999887777776667767666555443211 24899999999999999999
Q ss_pred cccccceeEEEeeccCCCCHHHHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
+++.+-++++|+|++....-.-+.+|. -++ ..++.++++.||.|+... +... .
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q----rdv~-------------------y 136 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ----RDVT-------------------Y 136 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc----ccCc-------------------H
Confidence 999999999999998754333333331 222 234567889999998521 1111 1
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLL 998 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~ 998 (1384)
.....+..+.| .-|+.+||+||.|+.+.|..
T Consensus 137 eeak~faeeng---------------l~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 137 EEAKEFAEENG---------------LMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred HHHHHHHhhcC---------------eEEEEecccccCcHHHHHHH
Confidence 12222223333 47899999999999876544
No 281
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.19 E-value=7.8e-11 Score=128.74 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=108.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|..|+|||+|+-++++..+.....+.|-..+ .-.+..+ -....|.|+||+|...|..
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~--------------~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVD--------------GEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEEC--------------CEEEEEEEEcCCCcccChH
Confidence 456699999999999999999998877765555443111 0011111 0112488999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHH-HHH-H---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESL-NLL-K---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l-~ll-k---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
|+..++..+|+.|||+++++-...+....| .++ + ...+|+|+|.||+|+... +.-+.
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~----R~V~~-------------- 128 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE----RQVSE-------------- 128 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc----cccCH--------------
Confidence 999999999999999999885544433332 222 2 234799999999999631 00000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
... ..| ... -.++|+.+||....||.++|..|+..+..
T Consensus 129 -----eeg-~~l-------a~~-------~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 129 -----EEG-KAL-------ARS-------WGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred -----HHH-HHH-------HHh-------cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 000 011 111 13679999999999999999998876543
No 282
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.18 E-value=4.8e-11 Score=134.23 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=65.7
Q ss_pred CEEEEeCCCCcchhHHHHhcc--------cccceeEEEeeccCCCCHHHHHHH-----HHHHhcCCceEEEEeecccccC
Q 000625 858 GLLVIDTPGHESFTNLRSRGS--------GLCDIAILVVDIMHGLEPQTIESL-----NLLKMRNTEFIVALNKVDRLYG 924 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~--------~~aDiaILVVDa~~Gv~~QT~E~l-----~llk~~~vP~IVaINKiDl~~~ 924 (1384)
.+.|+||||+..|...+..+. ...=++|+++|+..-..+.+.-+. ..+...++|+|+|+||+|++..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999888766655443 334578899999876566555333 2233468999999999999732
Q ss_pred cccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 925 WKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 925 w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
+ ..+.-.+......+...+......+...+... -.+++...+++|+|+.+++|+..|+..|-..+
T Consensus 172 ~-----~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~---------l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-----LEFILEWFEDPDSLEDLLESDYKKLNEEIAEL---------LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-----HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH---------CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-----hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 11111111101111111110011111111111 11334444899999999999999998876544
No 283
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.18 E-value=1.5e-10 Score=118.45 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.+.|+|..-+|||+||..++.+.+..-..++ +|..+|.. -+.+..... ..|.+|||.|++.|.+...
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdpt----vgvdffar------lie~~pg~r---iklqlwdtagqerfrsitk 76 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPT----VGVDFFAR------LIELRPGYR---IKLQLWDTAGQERFRSITK 76 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCc----cchHHHHH------HHhcCCCcE---EEEEEeeccchHHHHHHHH
Confidence 3688999999999999999987766444333 33333321 011111111 1489999999999999999
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHH-HHHh-----cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
.+++.+=+++||+|+++.-...-.+.|- .+.+ .++-|.+|..|+|+... +.-+
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq----RqVt----------------- 135 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ----RQVT----------------- 135 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh----cccc-----------------
Confidence 9999999999999998754433333332 1211 23457789999998621 1100
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKT 1006 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~ 1006 (1384)
..+.-...+.+| ..||.+||++|.||.+-+..|.+.+...
T Consensus 136 --~EEaEklAa~hg---------------M~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 136 --AEEAEKLAASHG---------------MAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred --HHHHHHHHHhcC---------------ceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 011112233334 3799999999999999999887655443
No 284
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.18 E-value=6.9e-11 Score=119.08 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=104.6
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
++++|..++|||||++.+..+.+... +..+.|+....+.. ..-.|.+||.||+..|..++.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk--------------gnvtiklwD~gGq~rfrsmWer 84 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK--------------GNVTIKLWDLGGQPRFRSMWER 84 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc--------------CceEEEEEecCCCccHHHHHHH
Confidence 78999999999999998865433211 12233333222211 0124889999999999999999
Q ss_pred cccccceeEEEeeccCC-CCHHHHHHHH-HHH---hcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHG-LEPQTIESLN-LLK---MRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~G-v~~QT~E~l~-llk---~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
+.+.++++|+|||+.+. --+-.+.-|. +|. -.++|++|..||+|+... |..
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A------------L~~------------ 140 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA------------LSK------------ 140 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc------------ccH------------
Confidence 99999999999999872 1233333333 332 247999999999999632 110
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+ +...|+..- ..+.+.++.|||+...||+-+++||+.+.
T Consensus 141 -~~l---i~rmgL~si-------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 141 -IAL---IERMGLSSI-------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred -HHH---HHHhCcccc-------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 112 223344221 13568999999999999999999998754
No 285
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.15 E-value=3.3e-10 Score=129.14 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=101.3
Q ss_pred EEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc-----
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES----- 869 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~----- 869 (1384)
|.+||.+++||||||.++.... +..+...+++..+|...+... ..|+|-|.||.-.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-----------------~sfv~ADIPGLIEGAs~G 224 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-----------------ESFVVADIPGLIEGASEG 224 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-----------------CcEEEecCcccccccccC
Confidence 7899999999999999998654 566666666677776665221 3599999999311
Q ss_pred --hhHHHHhcccccceeEEEeeccCCC--C-HHHHHHH-HHHHhc-----CCceEEEEeecccccCcccCCCchHHHHHH
Q 000625 870 --FTNLRSRGSGLCDIAILVVDIMHGL--E-PQTIESL-NLLKMR-----NTEFIVALNKVDRLYGWKTCRNAPIVKAIK 938 (1384)
Q Consensus 870 --F~~~r~rg~~~aDiaILVVDa~~Gv--~-~QT~E~l-~llk~~-----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~ 938 (1384)
.--...|.+..|-++|+|||++.-- . .+.+..| ..|..+ +.|.|||+||||++..
T Consensus 225 ~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-------------- 290 (369)
T COG0536 225 VGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-------------- 290 (369)
T ss_pred CCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC--------------
Confidence 1112234455688999999987422 1 2333333 344443 5799999999997521
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHH
Q 000625 939 QQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTM 1007 (1384)
Q Consensus 939 ~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l 1007 (1384)
.+.+..+...+.... ..+.+++|||+|++|+..|+..+..++....
T Consensus 291 ----------~e~~~~~~~~l~~~~-------------~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 291 ----------EEELEELKKALAEAL-------------GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ----------HHHHHHHHHHHHHhc-------------CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 011122222232211 1123334999999999999999988876653
No 286
>PTZ00099 rab6; Provisional
Probab=99.14 E-value=1.9e-10 Score=123.67 Aligned_cols=109 Identities=21% Similarity=0.131 Sum_probs=76.2
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHH-HHHHH-Hh--cCCceEEEEeecccccCcccCCCchH
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIE-SLNLL-KM--RNTEFIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E-~l~ll-k~--~~vP~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
.|.||||||++.|..++..+++.+|++|||+|+++....+... ++..+ .. .++|+|||+||+|+... +....
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~----~~v~~ 105 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL----RKVTY 105 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc----cCCCH
Confidence 4899999999999999999999999999999998854333332 22222 22 35899999999998521 00000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.......... .+.+++|||++|.||.++|.+|+..++
T Consensus 106 -------------------~e~~~~~~~~---------------~~~~~e~SAk~g~nV~~lf~~l~~~l~ 142 (176)
T PTZ00099 106 -------------------EEGMQKAQEY---------------NTMFHETSAKAGHNIKVLFKKIAAKLP 142 (176)
T ss_pred -------------------HHHHHHHHHc---------------CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0111111111 246899999999999999999886654
No 287
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.2e-10 Score=121.51 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=97.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+-|.++|..|+|||+|+-.|+...+... ...|....+.+.+ ....+++||.|||.....-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-vtSiepn~a~~r~------------------gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT-VTSIEPNEATYRL------------------GSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe-eeeeccceeeEee------------------cCcceEEEeCCCcHHHHHHH
Confidence 3499999999999999999987643311 1112222222221 12247999999998876555
Q ss_pred Hhccc---ccceeEEEeeccCCCCHH---HHHHH-HHH-----HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 875 SRGSG---LCDIAILVVDIMHGLEPQ---TIESL-NLL-----KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 875 ~rg~~---~aDiaILVVDa~~Gv~~Q---T~E~l-~ll-----k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
.-.+. .+-.+|||||+.. +.+. +-++| ..| ...++|++||+||.|+.. +-..+.+++|++
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t-------Akt~~~Ir~~LE 171 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSAT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT-------AKTAEKIRQQLE 171 (238)
T ss_pred HHHccccccceeEEEEEeccc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh-------cCcHHHHHHHHH
Confidence 54444 6889999999865 2222 22222 122 234589999999999962 222333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhh------h-ccc-----CCC-CceeEEeCCCcCCCChhhHHHHHHH
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELY------Y-KNK-----DRG-ETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~------~-~~~-----d~g-~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.-.+.+.. -+..+.. ++.+.+ + ... ++. ..+.|.++|+++| +|.++..||..
T Consensus 172 kEi~~lr~----sRsa~~~--~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 172 KEIHKLRE----SRSALRS--ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred HHHHHHHH----HHhhhhc--cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 11111110 0111101 111111 0 011 122 5789999999999 88888888754
No 288
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.14 E-value=4e-10 Score=131.71 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=60.7
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhc-cc-----ccccCCCCEEEEeCCCC-
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL-KA-----NATLKVPGLLVIDTPGH- 867 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i-~~-----~~~~~~~~i~~IDTPGH- 867 (1384)
|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+ .. ...+....|.||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998765544444444 56676666432111110000 00 00112235999999996
Q ss_pred ---cchhHHHH---hcccccceeEEEeecc
Q 000625 868 ---ESFTNLRS---RGSGLCDIAILVVDIM 891 (1384)
Q Consensus 868 ---e~F~~~r~---rg~~~aDiaILVVDa~ 891 (1384)
..+..+.. ..++.||++|+|||+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 44554433 4588999999999996
No 289
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.4e-11 Score=119.54 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=105.0
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
+..+|..|+||||||-+.+...+...-.. .+|..+-+-...- ++..-.....-.-.++.||||.|++.|.++...
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIs----TVGIDFreKrvvY-~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFIS----TVGIDFREKRVVY-NSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEE----EeecccccceEEE-eccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 46789999999999988775554422111 1121111110000 000000000000125899999999999999999
Q ss_pred cccccceeEEEeeccCCCC-HHHHHHHHHHHhc----CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 877 GSGLCDIAILVVDIMHGLE-PQTIESLNLLKMR----NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~----~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.++.+-+.||++|.+.--. -.++.+|.+|+.+ +--+|++.||+|+.. .+ +..
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---------~R---------~Vs----- 143 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---------QR---------VVS----- 143 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---------hh---------hhh-----
Confidence 9999999999999976332 3345555666553 335788999999862 00 000
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE 1009 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e 1009 (1384)
-.+.......+| +|+|.+||-||.||....+.|+.++-..|..
T Consensus 144 ~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYG---------------LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 112223333344 5999999999999998888887776555544
No 290
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.10 E-value=5.9e-10 Score=126.15 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-cchhHH-
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH-ESFTNL- 873 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH-e~F~~~- 873 (1384)
.|+++|.+.+||||||++|+++....+.....|...-. ....|+.-.|+|+|+||. +.++.-
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VP----------------G~l~Y~ga~IQild~Pgii~gas~g~ 128 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVP----------------GMLEYKGAQIQLLDLPGIIEGASSGR 128 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCccccccCceeccccc----------------ceEeecCceEEEEcCcccccCcccCC
Confidence 49999999999999999999876544333333322211 123455567999999994 333322
Q ss_pred -----HHhcccccceeEEEeeccC
Q 000625 874 -----RSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 874 -----r~rg~~~aDiaILVVDa~~ 892 (1384)
....++.||++|+|+|+..
T Consensus 129 grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 129 GRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred CCcceeeeeeccCCEEEEEEecCC
Confidence 3344678999999999874
No 291
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=7.2e-10 Score=131.03 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
.+.|+|+|.+|+|||||||+|.+..+. .+..+|.|.+.--+.|. +++..++|+||.|...
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~----------------~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT----------------VNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee----------------cCCeEEEEEeccccccccC
Confidence 366999999999999999999976543 45556667664333333 3345699999999644
Q ss_pred -----hhHH-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc------------CCceEEEEeecccccCcccCCCc
Q 000625 870 -----FTNL-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR------------NTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 870 -----F~~~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~------------~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
..-+ ....+..+|+++||||++.+...+.....+.|... .-|+|+++||+|+.......+..
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~ 411 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI 411 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC
Confidence 2222 23457789999999999887776666655555432 24889999999986321111111
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEE-eCCCcCCCChhhHHHHHHHHH
Q 000625 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIV-PTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iV-pvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
++ .| .....+..++++ .+|++|++|+..|...|...+
T Consensus 412 ~~----------------------------------~~-~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PV----------------------------------VY-PSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ce----------------------------------ec-cccccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00 00 000112334444 599999999999998876543
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.06 E-value=6.7e-10 Score=130.04 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
...+.||||+|...-.. ..+..||++|||++...|-.-|.... -...+..|||+||+|++.. ....
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~------~~a~- 213 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNK------TAAR- 213 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccch------hHHH-
Confidence 45799999999652111 13567999999987555444333221 0122335899999998721 1100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.....+...|.... .. ..+...||++|||++|.||++|+..|..+++
T Consensus 214 --------------~~~~el~~~L~l~~--~~------~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 --------------RAAAEYRSALRLLR--PK------DPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------------HHHHHHHHHHhccc--cc------ccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01111222221100 00 0012358999999999999999999988765
No 293
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.9e-10 Score=113.46 Aligned_cols=158 Identities=24% Similarity=0.215 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.|||..|+||||++-+|--.++.... + |+......+ .|++-.+++||..|+.+...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-P--tigfnve~v----------------~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-P--TIGFNVETV----------------PYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-C--CCCcCcccc----------------ccccccceeeEccCcccccH
Confidence 4445899999999999998777544433111 1 111111122 24445699999999999999
Q ss_pred HHHhcccccceeEEEeeccCCC--CHHHHHHHHHHHh---cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGL--EPQTIESLNLLKM---RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv--~~QT~E~l~llk~---~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++..+|.+|+|||.++.. .....++..+|.. .+..++|++||+|..+. - +
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~-------~-----------t--- 136 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA-------L-----------T--- 136 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh-------h-----------h---
Confidence 9999999999999999998743 2333344444443 34678999999997531 0 0
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
-.++ +...|+.. +. ...+.||.+||.+|+|++..++||..-++
T Consensus 137 ----~~E~---~~~L~l~~-Lk------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 137 ----RSEV---LKMLGLQK-LK------DRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ----HHHH---HHHhChHH-Hh------hheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 0111 11222211 00 13479999999999999999999876443
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.04 E-value=6e-10 Score=122.83 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe------------eee--eEecccccccchhhcc----ccccc
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ------------IGA--TYFPAENIRERTRELK----ANATL 854 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~------------iga--~~~~~~~i~~~~~~i~----~~~~~ 854 (1384)
..|+|+|+|+.|+|||||+.+|+.........+-+..+ .|. ..+....+........ ....+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 35679999999999999999997531100000001101 111 1111111100000000 00111
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....+.||+|.|..... .......++.++|||+.++...+. +.....+.|.||++||+|+... ....
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~----~~~~-- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEA----VGFD-- 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcccc----chhh--
Confidence 24579999999932111 111234566778999987654222 2223345789999999999621 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
+..+...+... ....+++++||++|.||..|+.+|..+
T Consensus 168 -----------------~~~~~~~l~~~-------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----------------VEKMKADAKKI-------------NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----------------HHHHHHHHHHh-------------CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11111222221 123689999999999999999998754
No 295
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.04 E-value=1.9e-09 Score=121.08 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=84.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEe---e--------eeeEeccc--------ccc----cchhh
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ---I--------GATYFPAE--------NIR----ERTRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~---i--------ga~~~~~~--------~i~----~~~~~ 847 (1384)
.+..|.|+|+|+.++||||||++|.+..+.....|.+|.. + .+.++... .+. ..+..
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 3677889999999999999999999765322222333311 1 01111000 000 00000
Q ss_pred cc---ccc-------c---cCCCCEEEEeCCCCcch-------------hHHHHhcccc-cceeEEEeeccCCCCHHH-H
Q 000625 848 LK---ANA-------T---LKVPGLLVIDTPGHESF-------------TNLRSRGSGL-CDIAILVVDIMHGLEPQT-I 899 (1384)
Q Consensus 848 i~---~~~-------~---~~~~~i~~IDTPGHe~F-------------~~~r~rg~~~-aDiaILVVDa~~Gv~~QT-~ 899 (1384)
+. ..+ . -..+.|+||||||.... ..++..++.. .+++++|||+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 00 000 0 11367999999997521 2345566774 569999999999988877 5
Q ss_pred HHHHHHHhcCCceEEEEeecccc
Q 000625 900 ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 900 E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+.++.+...+.|+|+|+||+|.+
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~ 205 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLM 205 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCC
Confidence 88888888999999999999987
No 296
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.02 E-value=1.5e-10 Score=114.51 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=97.7
Q ss_pred EEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcc
Q 000625 799 IMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGS 878 (1384)
Q Consensus 799 IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~ 878 (1384)
++|...+|||+||-++..+.+-.+.. ...+|..+- ...+..+. ..-.+.+|||.|++.|.+....++
T Consensus 2 llgds~~gktcllir~kdgafl~~~f---istvgid~r--------nkli~~~~--~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF---ISTVGIDFR--------NKLIDMDD--KKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce---eeeeeeccc--------cceeccCC--cEEEEEEeeccchHHHhhhhHhhh
Confidence 68999999999998776554443321 111221110 00111100 112489999999999999999999
Q ss_pred cccceeEEEeeccCCCCHHHHHHH-HHHHhc---CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHH
Q 000625 879 GLCDIAILVVDIMHGLEPQTIESL-NLLKMR---NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQ 954 (1384)
Q Consensus 879 ~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~---~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~ 954 (1384)
+.+|..+||+|+.+.........| ..+..+ .+.+.++.||||+.+.. + +...-+.+
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er-----~------------v~~ddg~k--- 128 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER-----A------------VKRDDGEK--- 128 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh-----c------------cccchHHH---
Confidence 999999999999886665555544 444443 37889999999985310 0 00000111
Q ss_pred HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 955 IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 955 I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
....+| +||+.+||+||.|++-.+..|..
T Consensus 129 ---la~~y~---------------ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 129 ---LAEAYG---------------IPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred ---HHHHHC---------------CCceeccccccccHhHHHHHHHH
Confidence 112222 59999999999999877766654
No 297
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=6.8e-10 Score=115.08 Aligned_cols=208 Identities=14% Similarity=0.100 Sum_probs=129.1
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
--|...++|+|..++||||||.+++.+-+..+.... ||..++..+ +.+. ...-.+.+|||.|++.|
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykkt----Igvdflerq------i~v~----~Edvr~mlWdtagqeEf 82 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT----IGVDFLERQ------IKVL----IEDVRSMLWDTAGQEEF 82 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccc----cchhhhhHH------HHhh----HHHHHHHHHHhccchhH
Confidence 346667999999999999999999987666544333 343333211 0110 00123779999999999
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHH-HHHHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQ-TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~Q-T~E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
-.....+++.+...|||++.++..... |.++.+-+.. ..+|.|+|-||||++.+ +-+
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved------s~~-------------- 142 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED------SQM-------------- 142 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh------hhc--------------
Confidence 999999999999999999998865433 3333333332 35999999999999732 000
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHHHHHHhhhcccccceE-EEEEEE
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCT-VLEVKV 1026 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~~l~e~l~~~~~~~~~-VlEvk~ 1026 (1384)
-...+.-|+.. -.+.++.+|++...|+...|..|...+...+...++.+...+-. +-..+.
T Consensus 143 ----~~~evE~lak~--------------l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~~~~~~~~q~sSsn~~~s 204 (246)
T KOG4252|consen 143 ----DKGEVEGLAKK--------------LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQSLNANERKQSSSSNSTYS 204 (246)
T ss_pred ----chHHHHHHHHH--------------hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhchhhccccCCCCcc
Confidence 00111111111 12467789999999999999999887777666655543321110 000011
Q ss_pred EcCcceEEEEEEEeeeecCCCEEEEcc
Q 000625 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCG 1053 (1384)
Q Consensus 1027 ~~G~G~vi~~iV~~G~Lr~GD~Ivv~g 1053 (1384)
. .+..+..-..+++.++++|++.+
T Consensus 205 t---sp~s~t~~~~~t~~~~~ti~lrP 228 (246)
T KOG4252|consen 205 T---SPPSTTVEAWVTPVPTATITLRP 228 (246)
T ss_pred C---CCCcceeeeeeeecCCceeeech
Confidence 1 11222233456777888777643
No 298
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.96 E-value=5.1e-09 Score=125.96 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhc----c--cccccCCCCEEEEeCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTREL----K--ANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i----~--~~~~~~~~~i~~IDTPG 866 (1384)
+.|+|+|.+++|||||+++|++..+.....++.| ..+|..+++......+...+ . +...+....|+||||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4599999999999999999998876554445444 56676665432111110000 0 00011223589999999
Q ss_pred Cc----ch---hHHHHhcccccceeEEEeecc
Q 000625 867 HE----SF---TNLRSRGSGLCDIAILVVDIM 891 (1384)
Q Consensus 867 He----~F---~~~r~rg~~~aDiaILVVDa~ 891 (1384)
.. .+ .+...+.++.||++|+|||+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 23 233344588899999999996
No 299
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=3.6e-09 Score=106.14 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee--eeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--ATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig--a~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
|+.+|-.++||||||-.|....... .+..+| .-.++ |++-.|++||..|+.....++
T Consensus 20 ilmlGLd~aGKTtiLyKLkl~~~~~-----~ipTvGFnvetVt----------------ykN~kfNvwdvGGqd~iRplW 78 (180)
T KOG0071|consen 20 ILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVT----------------YKNVKFNVWDVGGQDKIRPLW 78 (180)
T ss_pred EEEEecccCCceehhhHHhcCCCcc-----cccccceeEEEEE----------------eeeeEEeeeeccCchhhhHHH
Confidence 7899999999999999997443211 111112 12222 333459999999999999999
Q ss_pred HhcccccceeEEEeeccCC--CCHHHHHHHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
++++..+-++|||||+.+. +...-.+..+++ .+..+|++|..||-|++...+
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~----------------------- 135 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK----------------------- 135 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-----------------------
Confidence 9999999999999998764 222222333333 235689999999999973210
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..+|...|.-.-+ -+....+.|+||.+|.|+.+-|.||...+
T Consensus 136 --pqei~d~leLe~~----------r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 136 --PQEIQDKLELERI----------RDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred --HHHHHHHhccccc----------cCCccEeeccccccchhHHHHHHHHHhhc
Confidence 1222222211111 12445789999999999988888876543
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.93 E-value=2.6e-09 Score=105.60 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=93.1
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----CcchhH
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG----HESFTN 872 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG----He~F~~ 872 (1384)
+.+||.+|+|||||+.+|++..+... -||-+ . |+. =..||||| |..+..
T Consensus 4 i~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAv---e------------------~~d--~~~IDTPGEy~~~~~~Y~ 56 (148)
T COG4917 4 IAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAV---E------------------FND--KGDIDTPGEYFEHPRWYH 56 (148)
T ss_pred eEEecccccCchhHHHHhhcchhhhc----cccee---e------------------ccC--ccccCCchhhhhhhHHHH
Confidence 89999999999999999986543211 12211 1 111 13799999 444444
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
.....+..+|++++|-.++++.++ -.-.++.....|+|-+++|+|+.. . ..+
T Consensus 57 aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae------d-------------------~dI 108 (148)
T COG4917 57 ALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE------D-------------------ADI 108 (148)
T ss_pred HHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc------h-------------------HhH
Confidence 444556778999999999986332 112233445568999999999962 1 234
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+..+|.+.| --+||.+|++...||.+|+..|..
T Consensus 109 ~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 109 SLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 45556676665 248999999999999999988764
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.93 E-value=5.5e-09 Score=121.71 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
..+.+.||||||...-. ...+..+|.+++|.....|-. +..+.. ...++|.|||+||+|++.. .. .
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl~~~------~~-~ 190 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADGEGA------TN-V 190 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccccch------hH-H
Confidence 35679999999964222 124567889888865443322 111111 1246889999999998621 10 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.. +...+. ..+.. +... ...| ..++++|||++|.||.+|+.+|..+.
T Consensus 191 ~~-------~~~~~~-------~~l~~--l~~~----~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 191 TI-------ARLMLA-------LALEE--IRRR----EDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HH-------HHHHHH-------HHHhh--cccc----ccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 000000 00000 0000 0011 24799999999999999999987753
No 302
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.89 E-value=3.6e-09 Score=114.28 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=106.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
+...|+|+|...+|||+||-.+....+.....+.+.....+. +.... =+...+.+|||.|+++|..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~d-------------g~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDD-------------GKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecC-------------CCEEEEeeeecCCCccccc
Confidence 345689999999999999999887767666555554332222 11110 0012489999999999999
Q ss_pred HHHhcccccceeEEEeeccCCCCHH--HHHHHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef 948 (1384)
+|...+..+|++|++++.+...... ...++-.++. .++|+|+|.+|.||.. +......|..+.....
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~------d~~~~~~l~~~~~~~V--- 139 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD------DPSTLEKLQRQGLEPV--- 139 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh------CHHHHHHHHhccCCcc---
Confidence 9988999999999999876632222 1112223332 4699999999999962 2222222222110000
Q ss_pred HHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
...+......+. +-+.++.+||++..|+.+.++..+..
T Consensus 140 --t~~~g~~lA~~i--------------ga~~y~EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 140 --TYEQGLELAKEI--------------GAVKYLECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred --cHHHHHHHHHHh--------------CcceeeeehhhhhCCcHHHHHHHHHH
Confidence 000111111111 33689999999999999988776543
No 303
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.89 E-value=4e-09 Score=105.89 Aligned_cols=155 Identities=25% Similarity=0.254 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN 872 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~ 872 (1384)
|...|.++|-.++||||||..|.+..+. .+|..-|.....+.. + ...++++||..|+.....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~-----hltpT~GFn~k~v~~----------~---g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR-----HLTPTNGFNTKKVEY----------D---GTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh-----hccccCCcceEEEee----------c---CcEEEEEEecCCccccch
Confidence 4455899999999999999999765433 233333322221110 0 113599999999999999
Q ss_pred HHHhcccccceeEEEeeccCC--CCHHHHHHHHHH---HhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHH
Q 000625 873 LRSRGSGLCDIAILVVDIMHG--LEPQTIESLNLL---KMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNE 947 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~G--v~~QT~E~l~ll---k~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~e 947 (1384)
.+..++...|++|+|||+++. +.....++..++ +...+|+.|+.||.|++.. +
T Consensus 78 yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta------a---------------- 135 (185)
T KOG0074|consen 78 YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA------A---------------- 135 (185)
T ss_pred hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh------c----------------
Confidence 999999999999999998763 233333333444 3456899999999999721 1
Q ss_pred HHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 948 FNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 948 f~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
....+...+.-.|+. .+.+.|-.+||++++|+.+-..|+.
T Consensus 136 ---~~eeia~klnl~~lr----------dRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 136 ---KVEEIALKLNLAGLR----------DRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred ---chHHHHHhcchhhhh----------hceEEeeeCccccccCccCcchhhh
Confidence 112222222222221 1346889999999999998888764
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.87 E-value=9.5e-09 Score=115.89 Aligned_cols=148 Identities=24% Similarity=0.257 Sum_probs=98.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc--
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE-- 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe-- 868 (1384)
....|+|+|+|..++|||||+.+|+..++.... ++.++.-|+-.. ..+. ....++|.||-|+-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d------rLFATLDpT~h~----a~Lp-----sg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND------RLFATLDPTLHS----AHLP-----SGNFVLLTDTVGFISD 239 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc------hhheeccchhhh----ccCC-----CCcEEEEeechhhhhh
Confidence 445689999999999999999999977665433 333333332110 0010 12348999999953
Q ss_pred -------chhHHHHhcccccceeEEEeeccCCCC-HHHHHHHHHHHhcCCc-------eEEEEeecccccCcccCCCchH
Q 000625 869 -------SFTNLRSRGSGLCDIAILVVDIMHGLE-PQTIESLNLLKMRNTE-------FIVALNKVDRLYGWKTCRNAPI 933 (1384)
Q Consensus 869 -------~F~~~r~rg~~~aDiaILVVDa~~Gv~-~QT~E~l~llk~~~vP-------~IVaINKiDl~~~w~~~~~a~~ 933 (1384)
+|..... -...+|++|.|+|++|... .|-...+..|+..++| +|=|=||+|...++.
T Consensus 240 LP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------- 311 (410)
T KOG0410|consen 240 LPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------- 311 (410)
T ss_pred CcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-------
Confidence 3444333 3556899999999999754 5555667788888875 444677777642210
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 934 VKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 934 ~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.. .....|++||+||+|+.+|+..+...
T Consensus 312 -------------------------------e~----------E~n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 312 -------------------------------EE----------EKNLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred -------------------------------cc----------ccCCccccccccCccHHHHHHHHHHH
Confidence 00 11137899999999999999887543
No 305
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.86 E-value=4.3e-09 Score=116.98 Aligned_cols=165 Identities=20% Similarity=0.222 Sum_probs=108.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccc---ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQ---EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH- 867 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~---~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH- 867 (1384)
-+.|-++++|..++|||+||+.|...... .....|-||.|..+.+. ..++++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------------------~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------------------KSWYEVDLPGYG 194 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------------------ceEEEEecCCcc
Confidence 35577999999999999999999865432 11145666666544332 35999999991
Q ss_pred ---------cchhHHHHhccc---ccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHH
Q 000625 868 ---------ESFTNLRSRGSG---LCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVK 935 (1384)
Q Consensus 868 ---------e~F~~~r~rg~~---~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~ 935 (1384)
.+|.++...++- ..=.+.|+||++-++++.....|.+|...++|+.+|+||||+. |...+..
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~--k~~~~~~---- 268 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ--KKVKRTG---- 268 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh--hhccccc----
Confidence 334444443332 2335678899999999999999999999999999999999986 3221100
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 936 AIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 936 ~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+-..++..| +++.... +....|++.+|+.|+.|++.|+-.|.+.
T Consensus 269 --kKp~~~i~~~f-------------~~l~~~~------f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 269 --KKPGLNIKINF-------------QGLIRGV------FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred --cCccccceeeh-------------hhccccc------eeccCCceeeecccccCceeeeeehhhh
Confidence 00000000000 1111111 1234578899999999999988776654
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.82 E-value=3.4e-08 Score=116.71 Aligned_cols=170 Identities=18% Similarity=0.266 Sum_probs=87.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-cccc-Cce---eEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc-
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEA-GGI---TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE- 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~-gGI---Tq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe- 868 (1384)
..|+|+|.+|+|||||+|+||+-.-. .+.+ .|+ |.....+.. -+.+.++|||.||..
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-----------------p~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-----------------PKFPNVTLWDLPGIGT 98 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE------------------SS-TTEEEEEE--GGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-----------------CCCCCCeEEeCCCCCC
Confidence 46999999999999999999864221 1111 121 111111111 123679999999953
Q ss_pred -chh---HHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeeccc-ccCcccCCCchHHHHHHHhhHH
Q 000625 869 -SFT---NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDR-LYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 869 -~F~---~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl-~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
.|. -+-..++...|++|+|.+ ..+.......++.++.++.||.+|-||+|. +++-.......|.+. .
T Consensus 99 ~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e------~ 170 (376)
T PF05049_consen 99 PNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEE------K 170 (376)
T ss_dssp SS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HH------T
T ss_pred CCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHH------H
Confidence 342 223346778898777664 446677777788888999999999999996 211111111122110 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcC--CCChhhHHHHHHHHHH
Q 000625 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAIS--GEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~t--GeGI~eLl~~L~~~~~ 1004 (1384)
+ +...-..+...|...|+. ..+||.||+.. ...++.|...|..-++
T Consensus 171 ~---L~~IR~~c~~~L~k~gv~------------~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 171 L---LQEIRENCLENLQKAGVS------------EPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp H---HHHHHHHHHHHHHCTT-S------------S--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred H---HHHHHHHHHHHHHHcCCC------------cCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 111112344555555542 35788888874 4567777777765544
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=1.2e-08 Score=107.74 Aligned_cols=64 Identities=30% Similarity=0.401 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcch----hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHH-HhcCCceEEEEeec
Q 000625 856 VPGLLVIDTPGHESF----TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLL-KMRNTEFIVALNKV 919 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F----~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll-k~~~vP~IVaINKi 919 (1384)
..+|+||||||..+. ..++..++..+|++|+|+++.+.+..+....|..+ ....-.+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999996442 35567778999999999999998776666665544 44555688899985
No 308
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.82 E-value=6.8e-08 Score=109.55 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=73.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
...++.|+|||++|+|||||+++|++..+. .+...+.|..+..+... +....|+||||||..+
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~----------------~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT----------------VDGFKLNIIDTPGLLE 91 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE----------------ECCeEEEEEECCCcCc
Confidence 345567999999999999999999987643 22233334443322222 1224599999999765
Q ss_pred hhH----------HHHhccc--ccceeEEEeeccC-CCCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000625 870 FTN----------LRSRGSG--LCDIAILVVDIMH-GLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 870 F~~----------~r~rg~~--~aDiaILVVDa~~-Gv~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
+.. .+.+++. ..|++|+|..++. .+.......++.+.. ++ .++|||+|++|..
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 521 1222332 4677777765543 344555555555543 33 4799999999986
No 309
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.79 E-value=2.2e-08 Score=110.02 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=61.4
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce--EEEEeecccccCcccCCCchHH
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF--IVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~--IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
..++||.|.|.. ...... ...+|.+|+|||+.++...+.. + ...+.+ ++++||+|+... ...
T Consensus 92 ~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~----~~~--- 155 (199)
T TIGR00101 92 LEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPM----VGA--- 155 (199)
T ss_pred CCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhcccc----ccc---
Confidence 568999999931 111111 1236889999999887653211 1 123344 999999999621 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+..+...+...+ ...+++++||++|+||.+|+.+|..+
T Consensus 156 ----------------~~~~~~~~~~~~~-------------~~~~i~~~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 156 ----------------DLGVMERDAKKMR-------------GEKPFIFTNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred ----------------cHHHHHHHHHHhC-------------CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 0111222232221 23689999999999999999988643
No 310
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=98.78 E-value=2.3e-08 Score=96.68 Aligned_cols=89 Identities=26% Similarity=0.431 Sum_probs=70.6
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecc
Q 000625 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~ 1097 (1384)
+++|+|++...|+|++++++|++|+|++||.|+++ ..+.+||+|+++.+. ..+++.+++++.| .
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~gkVr~l~d~~g~----------~v~~a~Ps~~V~I--~ 65 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAG----TTYGKVRAMFDENGK----------RVKEAGPSTPVEI--L 65 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEc----ccccEEEEEECCCCC----------CCCEECCCCcEEE--c
Confidence 68999999999999999999999999999988763 346699999988752 1234445555555 5
Q ss_pred cccc-ccCCCceEEeCCCccHHHHHH
Q 000625 1098 GLEH-AIAGTGLYVVGPDDDLEDVKE 1122 (1384)
Q Consensus 1098 gL~~-~~aG~~l~v~~~e~~~~~~~~ 1122 (1384)
||+. +.+|+.|+++.++..+..+..
T Consensus 66 G~~~~P~aGd~~~~~~se~~Ak~~~~ 91 (95)
T cd03702 66 GLKGVPQAGDKFLVVESEKEAKEIAE 91 (95)
T ss_pred CCCCCCCCCCEEEEeCCHHHHHHHHH
Confidence 8887 489999999999887766543
No 311
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=1.9e-08 Score=118.76 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
-++.++|+|.+++|||||++.++...+....+...|..+..-+ +.|+...+++|||||.-+-
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH----------------~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH----------------LDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh----------------hhhheeeeeecCCccccCcch
Confidence 3445999999999999999999877655444333333322222 2344556999999994321
Q ss_pred ---hH-HHHh--c-ccccceeEEEeeccC--CCCH--H--HHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHH
Q 000625 871 ---TN-LRSR--G-SGLCDIAILVVDIMH--GLEP--Q--TIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAI 937 (1384)
Q Consensus 871 ---~~-~r~r--g-~~~aDiaILVVDa~~--Gv~~--Q--T~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l 937 (1384)
.+ ++.. + +.+--+|+++.|.+. |... | -+.+|+-|. .|.|+|+|+||||... ..++.
T Consensus 231 EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~------~edL~--- 300 (620)
T KOG1490|consen 231 EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMR------PEDLD--- 300 (620)
T ss_pred hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccC------ccccC---
Confidence 11 1111 1 122235788888864 4432 2 223333333 4679999999999873 22221
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 938 KQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 938 ~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..-..++..+... +.++|+.+|+++-+||.++-...+
T Consensus 301 ------------~~~~~ll~~~~~~--------------~~v~v~~tS~~~eegVm~Vrt~AC 337 (620)
T KOG1490|consen 301 ------------QKNQELLQTIIDD--------------GNVKVVQTSCVQEEGVMDVRTTAC 337 (620)
T ss_pred ------------HHHHHHHHHHHhc--------------cCceEEEecccchhceeeHHHHHH
Confidence 1112333344333 347999999999999988765544
No 312
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.75 E-value=1.6e-07 Score=105.15 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=84.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH--
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-- 873 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~-- 873 (1384)
|++||..++||||+...|.+...+ ....-|.|.++....+.. +..-.|+|||+||+..|...
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---------------~~~~~l~iwD~pGq~~~~~~~~ 66 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---------------LSFLPLNIWDCPGQDDFMENYF 66 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---------------TTSCEEEEEEE-SSCSTTHTTH
T ss_pred EEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---------------CCCcEEEEEEcCCccccccccc
Confidence 899999999999999998754322 111123343333222211 11125999999999887654
Q ss_pred ---HHhcccccceeEEEeeccCCCCHHHHH----HHHHHHh--cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 874 ---RSRGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKM--RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 874 ---r~rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~--~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
+..-++.+.++|+|+|+...-....+. .+..|.. .++.|.|+|+|||++. .+.+..
T Consensus 67 ~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~-------~~~r~~-------- 131 (232)
T PF04670_consen 67 NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS-------EDEREE-------- 131 (232)
T ss_dssp TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS--------HHHHHH--------
T ss_pred cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC-------HHHHHH--------
Confidence 456678999999999998322333332 3333443 3588999999999972 222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCC
Q 000625 945 QNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG 989 (1384)
Q Consensus 945 ~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tG 989 (1384)
.|......|...+...+++ .+.++.||-...
T Consensus 132 --~~~~~~~~i~~~~~~~~~~------------~~~~~~TSI~D~ 162 (232)
T PF04670_consen 132 --IFRDIQQRIRDELEDLGIE------------DITFFLTSIWDE 162 (232)
T ss_dssp --HHHHHHHHHHHHHHHTT-T------------SEEEEEE-TTST
T ss_pred --HHHHHHHHHHHHhhhcccc------------ceEEEeccCcCc
Confidence 2233344555555554432 478999998863
No 313
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.7e-08 Score=104.31 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=76.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
-.++++|--|+||||||..|-..+....- -|.|..+..+. +.+-.++.+|..||..-...+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~----------------Ig~m~ftt~DLGGH~qArr~w 81 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELS----------------IGGMTFTTFDLGGHLQARRVW 81 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhe----------------ecCceEEEEccccHHHHHHHH
Confidence 34899999999999999999755432111 12222111111 122348999999999988888
Q ss_pred HhcccccceeEEEeeccCC-CCHHHHHHHHHHH----hcCCceEEEEeeccccc
Q 000625 875 SRGSGLCDIAILVVDIMHG-LEPQTIESLNLLK----MRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~QT~E~l~llk----~~~vP~IVaINKiDl~~ 923 (1384)
..++..||.+|++||+.+- .....+..+..|. ..++|++|..||||+++
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC
Confidence 9999999999999999763 2233444444332 35799999999999974
No 314
>PTZ00258 GTP-binding protein; Provisional
Probab=98.73 E-value=1.2e-07 Score=113.33 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc--cchhhcccccccCCCCEEEEeCCCCcc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR--ERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~--~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.++..|+|+|.+++|||||+++|++..+..+..++.|.+.....+++...+ ..+... .........|.|+||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~-~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHF-KPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHc-CCcccCCCCeEEEECCCcCc
Confidence 345569999999999999999999888777777777755443333332211 111100 01111123599999999431
Q ss_pred -------hhHHHHhcccccceeEEEeecc
Q 000625 870 -------FTNLRSRGSGLCDIAILVVDIM 891 (1384)
Q Consensus 870 -------F~~~r~rg~~~aDiaILVVDa~ 891 (1384)
..+.....++.||++|+|||+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3334445677899999999984
No 315
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.73 E-value=3.7e-07 Score=105.58 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-ccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-EAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-e~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
...+.|+|||.+|+|||||+|+|++..+... ...+.|.+...... .+....|+||||||..+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~----------------~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSR----------------TRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEE----------------EECCeEEEEEECCCCCch
Confidence 4566799999999999999999998765321 11111111100000 012346999999997654
Q ss_pred hHH-------HHhcc--cccceeEEEeeccC-CCCHHHHHHHHHHHhc-C----CceEEEEeecccc
Q 000625 871 TNL-------RSRGS--GLCDIAILVVDIMH-GLEPQTIESLNLLKMR-N----TEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~-------r~rg~--~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~-~----vP~IVaINKiDl~ 922 (1384)
..+ ....+ ...|++|||+..+. .+.......+..+... | .++||++|+.|..
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 221 11111 24789999965543 3444444455444431 2 4799999999976
No 316
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=2.7e-08 Score=114.07 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee--------------eeEecccccccchhh-c-cc--cccc
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG--------------ATYFPAENIRERTRE-L-KA--NATL 854 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig--------------a~~~~~~~i~~~~~~-i-~~--~~~~ 854 (1384)
...+|.|||.+|+||||||.+|+..........-|.-+++ ...+....+...... + .. ....
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~ 182 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPL 182 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhh
Confidence 4567999999999999999988753211111111111111 111111110000000 0 00 0112
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHH
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIV 934 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~ 934 (1384)
....++||++-|.-..-.... + ..+.-|.|++...|.. +.+ .+-.....+-||+|||+|++. ...+
T Consensus 183 ~~~d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~d-kpl---Kyp~~f~~ADIVVLNKiDLl~------~~~~- 248 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGED-KPL---KYPHMFAAASLMLLNKVDLLP------YLNF- 248 (290)
T ss_pred cCCcEEEEECCCCccCCCccc--h-hhceeEEEEECccccc-cch---hccchhhcCcEEEEEhHHcCc------ccHH-
Confidence 233688999988411100000 1 1133457777777643 111 222334567899999999962 1111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 935 KAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 935 ~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.+..+...+... ....+||++||++|+|+..|+.||..
T Consensus 249 ----------------dle~~~~~lr~l-------------np~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 249 ----------------DVEKCIACAREV-------------NPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred ----------------HHHHHHHHHHhh-------------CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 112222233222 13468999999999999999999864
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.62 E-value=5.1e-08 Score=109.02 Aligned_cols=173 Identities=22% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccccc-------------Cc-----------eeEeeeeeEecccccccchhh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA-------------GG-----------ITQQIGATYFPAENIRERTRE 847 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~-------------gG-----------ITq~iga~~~~~~~i~~~~~~ 847 (1384)
-+.++|+|.|++|+|||||++.|...-...+.. || .+.+-+.|.-+... +.....
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~at-RG~lGG 105 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMAT-RGSLGG 105 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE----SSHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCc-CCCCCC
Confidence 356789999999999999999986322111110 11 01112222222111 000000
Q ss_pred ccc-------ccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000625 848 LKA-------NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 848 i~~-------~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
+.. -+..-.+.+.||.|-|.---- ..-...||++|||+-...|-.-|.+.. .+ +.++=||||||.|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka-Gi---mEiaDi~vVNKaD 178 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKA-GI---MEIADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-T-TH---HHH-SEEEEE--S
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhh-hh---hhhccEEEEeCCC
Confidence 100 011123569999999842211 112567999999998887766555432 01 1135699999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
+.. +. .+ ...+...|.... .. ... ...|++.|||.+|.||++|+..|.
T Consensus 179 ~~g-------A~----------~~-------~~~l~~~l~l~~-~~-----~~~--W~ppV~~tsA~~~~Gi~eL~~~i~ 226 (266)
T PF03308_consen 179 RPG-------AD----------RT-------VRDLRSMLHLLR-ER-----EDG--WRPPVLKTSALEGEGIDELWEAID 226 (266)
T ss_dssp HHH-------HH----------HH-------HHHHHHHHHHCS-TS-----CTS--B--EEEEEBTTTTBSHHHHHHHHH
T ss_pred hHH-------HH----------HH-------HHHHHHHHhhcc-cc-----ccC--CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 752 11 11 111222222110 00 011 236999999999999999999987
Q ss_pred HHHH
Q 000625 1001 QWTQ 1004 (1384)
Q Consensus 1001 ~~~~ 1004 (1384)
.+..
T Consensus 227 ~~~~ 230 (266)
T PF03308_consen 227 EHRD 230 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.61 E-value=3e-07 Score=106.09 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccccccc--C----c--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEA--G----G--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--g----G--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
.+|.|+|..|+|||||++.|+++.+..... . . -|..+....+... +. .. ...|+||||||
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~---e~------~~---~l~LtiiDTpG 72 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELE---EN------GV---KLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEE---ET------CE---EEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEec---cC------Cc---ceEEEEEeCCC
Confidence 358999999999999999999876543220 0 0 0111111111110 00 00 12599999999
Q ss_pred CcchhHH------------------HH------h---cccccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEEEee
Q 000625 867 HESFTNL------------------RS------R---GSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 867 He~F~~~------------------r~------r---g~~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
+.+..+. +. | .=...|++|++|+++ +|+.+..++.++.|..+ +++|.||.|
T Consensus 73 fGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vNvIPvIaK 151 (281)
T PF00735_consen 73 FGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VNVIPVIAK 151 (281)
T ss_dssp CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SEEEEEEST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-ccEEeEEec
Confidence 6543211 00 1 112368999999985 79999999999888776 899999999
Q ss_pred cccc
Q 000625 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 152 aD~l 155 (281)
T PF00735_consen 152 ADTL 155 (281)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9987
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=105.59 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=98.5
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-------------cCc-----------eeEeeeeeEecccccc---
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-------------AGG-----------ITQQIGATYFPAENIR--- 842 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-------------~gG-----------ITq~iga~~~~~~~i~--- 842 (1384)
..-++++|.|.|.+|+|||||++.|...-+..|. .|| ++.+.++|+-+...--
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3456779999999999999999998532111111 111 2334444444432110
Q ss_pred ---cchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeec
Q 000625 843 ---ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 843 ---~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKi 919 (1384)
..+..+..-+.--.+.+.||.|-|.-.--. --...||++|+|.-..-|-.-|.+.. .+ +.+-=||||||.
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~-Gi---mEiaDi~vINKa 199 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA-GI---MEIADIIVINKA 199 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh-hh---hhhhheeeEecc
Confidence 011100000111234689999988422111 12356899999887777777776643 11 223458999999
Q ss_pred ccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 920 DRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 920 Dl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
|+.. +.. + .. .+...|... . .+|... +...|+|.|||.+|+||++|+..|
T Consensus 200 D~~~-------A~~--a--------~r-------~l~~al~~~---~-~~~~~~--~W~ppv~~t~A~~g~Gi~~L~~ai 249 (323)
T COG1703 200 DRKG-------AEK--A--------AR-------ELRSALDLL---R-EVWREN--GWRPPVVTTSALEGEGIDELWDAI 249 (323)
T ss_pred Chhh-------HHH--H--------HH-------HHHHHHHhh---c-cccccc--CCCCceeEeeeccCCCHHHHHHHH
Confidence 9742 211 1 11 111111111 0 012222 234699999999999999999998
Q ss_pred HHHHH
Q 000625 1000 VQWTQ 1004 (1384)
Q Consensus 1000 ~~~~~ 1004 (1384)
..+..
T Consensus 250 ~~h~~ 254 (323)
T COG1703 250 EDHRK 254 (323)
T ss_pred HHHHH
Confidence 77653
No 320
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.1e-07 Score=100.32 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
..++++|.++.||||++.+.+...+.......+......+.|..+ .....|+.|||.|.+.|..++
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn--------------~g~irf~~wdtagqEk~gglr 76 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN--------------RGQIRFNVWDTAGQEKKGGLR 76 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecc--------------cCcEEEEeeecccceeecccc
Confidence 458999999999999999999777654333322222222222111 011249999999999999999
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHHH--HHHh-cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESLN--LLKM-RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l~--llk~-~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~ 951 (1384)
.-++-..-+||+++|....+.-+....|. +++. .|+|+|+|.||+|.-. +-
T Consensus 77 dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-----r~--------------------- 130 (216)
T KOG0096|consen 77 DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-----RK--------------------- 130 (216)
T ss_pred cccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-----cc---------------------
Confidence 98888889999999998877666655552 3333 3589999999999641 00
Q ss_pred HHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+. + ....++.++.+||+++.|+.--+.+|...
T Consensus 131 -------~k~k~v~---~----~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 131 -------VKAKPVS---F----HRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred -------cccccce---e----eecccceeEEeecccccccccchHHHhhh
Confidence 0000000 0 12467899999999999999888887643
No 321
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=98.58 E-value=2.5e-07 Score=89.76 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=67.7
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeec
Q 000625 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~ 1096 (1384)
+++|+|++..+|+|++++++|++|+|++||.|+++ ..+.+||+|++... +.+. +.++..+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G----~~~GkVr~~~d~~g-------------~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAG----GTYGKIRTMVDENG-------------KALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEEC----CccceEEEEECCCC-------------CCccccCCCCCEEE
Confidence 68999999999999999999999999999988864 34677888886542 1122 334555566
Q ss_pred ccccc-ccCCCceEEeCCCccHHHHH
Q 000625 1097 QGLEH-AIAGTGLYVVGPDDDLEDVK 1121 (1384)
Q Consensus 1097 ~gL~~-~~aG~~l~v~~~e~~~~~~~ 1121 (1384)
.||.. +.+|+.|+++.++.++..+.
T Consensus 65 ~g~~~~p~aGd~~~~~~~e~~a~~~~ 90 (95)
T cd03701 65 LGLKDVPKAGDGVLVVASEKEAKEIG 90 (95)
T ss_pred eeecCCccCCCEEEEeCCCHHHHHhh
Confidence 78876 78999999999998765543
No 322
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.2e-06 Score=100.27 Aligned_cols=134 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCc--eeEeeeeeEe------------------cccccccchhhc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYF------------------PAENIRERTREL 848 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gG--ITq~iga~~~------------------~~~~i~~~~~~i 848 (1384)
++-.-.|.|.+||+-.+||||+++.|+...+..-+.|. .|..+-+.+. |+..+...+..+
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 34445689999999999999999999977655322211 1111111100 000000000000
Q ss_pred ccc---cccC---CCCEEEEeCCCC-----------cchhHHHHhcccccceeEEEeeccC-CCCHHHHHHHHHHHhcCC
Q 000625 849 KAN---ATLK---VPGLLVIDTPGH-----------ESFTNLRSRGSGLCDIAILVVDIMH-GLEPQTIESLNLLKMRNT 910 (1384)
Q Consensus 849 ~~~---~~~~---~~~i~~IDTPGH-----------e~F~~~r~rg~~~aDiaILVVDa~~-Gv~~QT~E~l~llk~~~v 910 (1384)
-.. ..+. ...|+||||||. .+|+......+..||++||++|+.. .+.+.+.++|..|+-+.-
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 000 0111 136999999993 4678888888889999999999865 578999999999999888
Q ss_pred ceEEEEeecccc
Q 000625 911 EFIVALNKVDRL 922 (1384)
Q Consensus 911 P~IVaINKiDl~ 922 (1384)
.+-||+||.|.+
T Consensus 213 kiRVVLNKADqV 224 (532)
T KOG1954|consen 213 KIRVVLNKADQV 224 (532)
T ss_pred eeEEEecccccc
Confidence 899999999987
No 323
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.7e-08 Score=115.99 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=58.8
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-------CCHHHHHHHHHHHhcCC-ceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-------LEPQTIESLNLLKMRNT-EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-------v~~QT~E~l~llk~~~v-P~IVaINKiDl~ 922 (1384)
..+++||.|||.+|...+..|.+++|++||+|.+.-| .-.||.+|..+...+++ ++|+.+||||-.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDST 155 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeeccccc
Confidence 4699999999999999999999999999999998433 35899999999999984 788999999975
No 324
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.55 E-value=6.2e-07 Score=91.59 Aligned_cols=117 Identities=22% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee-EeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT-QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF- 870 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT-q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F- 870 (1384)
+.-.|+|+|.-++|||.||..|++.+...+..---| .+|....+.+.... -..+.|.||.|....
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rga-------------rE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGA-------------REQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCCh-------------hheEEEeecccccCch
Confidence 344589999999999999999998876543321111 22322222222100 024899999998888
Q ss_pred hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHh-----cCCceEEEEeecccc
Q 000625 871 TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKM-----RNTEFIVALNKVDRL 922 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-----~~vP~IVaINKiDl~ 922 (1384)
..+-..+++.+|+.|||++.++.-..|-.+.|.--.. ..+|+||..||+|+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 6667778888999999999988555555554432211 238999999999984
No 325
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.54 E-value=1.7e-07 Score=113.12 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=75.2
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF 870 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F 870 (1384)
.++...|+|+|.-|+|||||+-+|+...+... |...+--+.+|.+... ..-..+|+||+-...-
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~----VP~rl~~i~IPadvtP------------e~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA----VPRRLPRILIPADVTP------------ENVPTSIVDTSSDSDD 69 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccc----ccccCCccccCCccCc------------CcCceEEEecccccch
Confidence 34555699999999999999999987655422 1111111122221110 1112789999876665
Q ss_pred hHHHHhcccccceeEEEeeccC-----CCCHHHHHHHHHHH--hcCCceEEEEeecccccC
Q 000625 871 TNLRSRGSGLCDIAILVVDIMH-----GLEPQTIESLNLLK--MRNTEFIVALNKVDRLYG 924 (1384)
Q Consensus 871 ~~~r~rg~~~aDiaILVVDa~~-----Gv~~QT~E~l~llk--~~~vP~IVaINKiDl~~~ 924 (1384)
......-++.+|+++||++.++ +++.-.+-+++.+. -.++|+|+|.||+|...+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 5555667899999999998876 23332233333332 146899999999999753
No 326
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.53 E-value=1e-07 Score=102.09 Aligned_cols=163 Identities=19% Similarity=0.176 Sum_probs=86.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEeccccccc----chh------hcccc------------c
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRE----RTR------ELKAN------------A 852 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~----~~~------~i~~~------------~ 852 (1384)
..|.|+|+|||||||||.+++..-.......-||.++.+..- ...++. +.. .++.+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~D-a~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKED-ADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhh-HHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 469999999999999999987433222333334444322000 000000 000 01000 0
Q ss_pred ccCCCCEEEEeCCCCcchhHHHHhcccccc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCc
Q 000625 853 TLKVPGLLVIDTPGHESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNA 931 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a 931 (1384)
.+..-.|+||.+.| +...-. .....| +-|+|||...|..---.-+= .+ . ..=|+||||+|+.+ ..
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP-~i--~-~aDllVInK~DLa~------~v 158 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGP-GI--F-KADLLVINKTDLAP------YV 158 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCC-ce--e-EeeEEEEehHHhHH------Hh
Confidence 11123699999988 221111 123345 88999999987531100000 00 0 13478999999973 11
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 932 PIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 932 ~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+ .+..+..... .+.+..|||.+|++||+|+.+++.||...
T Consensus 159 ~~-----------------dlevm~~da~-------------~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GA-----------------DLEVMARDAK-------------EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred Cc-----------------cHHHHHHHHH-------------HhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 11 0111111111 12466899999999999999998887643
No 327
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.50 E-value=4e-07 Score=107.25 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=76.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC----cccc------------cccCceeEee-eeeEecccccccchhhcccccccCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGT----NVQE------------GEAGGITQQI-GATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t----~v~~------------ge~gGITq~i-ga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
..|+|+|++++|||||+++|... ++.. ....|-|+.. -..++|.... .+.....+ ..
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAv-----EI~~~~~~-~~ 91 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAV-----EININEGT-KF 91 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcce-----EEeccCCC-cc
Confidence 34899999999999999999987 4331 1123311111 1122222211 11111000 13
Q ss_pred CEEEEeCCCCcc-------------------------hhHH----HHhccc-ccceeEEEe-ecc------CCCCHHHHH
Q 000625 858 GLLVIDTPGHES-------------------------FTNL----RSRGSG-LCDIAILVV-DIM------HGLEPQTIE 900 (1384)
Q Consensus 858 ~i~~IDTPGHe~-------------------------F~~~----r~rg~~-~aDiaILVV-Da~------~Gv~~QT~E 900 (1384)
.+.||||+|+.. |... +...+. .+|++|||. |++ ++....-..
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 589999999532 2111 223345 799999999 775 456677788
Q ss_pred HHHHHHhcCCceEEEEeeccc
Q 000625 901 SLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 901 ~l~llk~~~vP~IVaINKiDl 921 (1384)
.+..|+..++|||+++|++|-
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCC
Confidence 899999999999999999993
No 328
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.48 E-value=1.8e-06 Score=95.71 Aligned_cols=110 Identities=25% Similarity=0.248 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch---
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F--- 870 (1384)
.|+|||..|+|||||++.|++..+.... ..++|+.+...... +....|+||||||..+-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~----------------~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE----------------VDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE----------------ETTEEEEEEE--SSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee----------------ecceEEEEEeCCCCCCCccc
Confidence 4899999999999999999987764322 23344443333222 22346999999995331
Q ss_pred ----hHHHHh----cccccceeEEEeeccCCCCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000625 871 ----TNLRSR----GSGLCDIAILVVDIMHGLEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 871 ----~~~r~r----g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
.....+ .....+++|||+... .+.......|..+.. .+ -.+||++|..|..
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 122222 234578999999988 777777777766653 23 3689999999976
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.41 E-value=9.2e-07 Score=92.86 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=67.0
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHH
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFN 949 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~ 949 (1384)
|..+..+.+..||++|+|+|+.++...+....+.++...+.|+|+|+||+|++.. . .+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~---~~------------ 59 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------E---VL------------ 59 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------H---HH------------
Confidence 4456667777899999999999877766666666666678999999999998520 0 00
Q ss_pred HHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 950 MRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 950 ~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
.... .+... ...++|++||++|.|+..|+..|..+++
T Consensus 60 ---~~~~-~~~~~--------------~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 60 ---EKWK-SIKES--------------EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred ---HHHH-HHHHh--------------CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 0000 01100 1247899999999999999988876553
No 330
>PRK14974 cell division protein FtsY; Provisional
Probab=98.37 E-value=8.9e-07 Score=104.33 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCEEEEeCCCCcch----hHHHHh--cccccceeEEEeeccCCCCHHHHHHHHHHH-hcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESF----TNLRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F----~~~r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||.... ...... ....+|.++||+|++.|- ...+.+.... ..+ +--|++||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~-~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVG-IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCC-CCEEEEeeecCC
Confidence 46999999996532 211111 123579999999997752 2233222222 223 356789999975
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.35 E-value=3.2e-06 Score=98.26 Aligned_cols=116 Identities=25% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccc------c----CceeEeeeeeEecccccccchhhcccccccCCCCEEE
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE------A----GGITQQIGATYFPAENIRERTRELKANATLKVPGLLV 861 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge------~----gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~ 861 (1384)
-.+.+|.++|..|+|||||++.|+++.+.... + .++...+....+.-+... ..|++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~--------------~~l~v 86 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFH--------------LNLTV 86 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeE--------------EEEEE
Confidence 34567999999999999999999987544331 1 112222222222111111 24999
Q ss_pred EeCCCCcchhHH------------------------HHhccc----ccceeEEEeec-cCCCCHHHHHHHHHHHhcCCce
Q 000625 862 IDTPGHESFTNL------------------------RSRGSG----LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEF 912 (1384)
Q Consensus 862 IDTPGHe~F~~~------------------------r~rg~~----~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~ 912 (1384)
|||||+-+|... ..|.-+ ..++|++.|-. .||+.+..++.+..+..+ +.+
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vNl 165 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VNL 165 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cCe
Confidence 999997766422 002111 25788888876 589999999999888665 678
Q ss_pred EEEEeecccc
Q 000625 913 IVALNKVDRL 922 (1384)
Q Consensus 913 IVaINKiDl~ 922 (1384)
|.||-|.|..
T Consensus 166 IPVI~KaD~l 175 (373)
T COG5019 166 IPVIAKADTL 175 (373)
T ss_pred eeeeeccccC
Confidence 9999999986
No 332
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=1.6e-06 Score=103.31 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c--ccCceeEee---eee----------EecccccccchhhcccccccCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G--EAGGITQQI---GAT----------YFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~-g--e~gGITq~i---ga~----------~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
+.-+|+|+|++|+|||||+.+|....+.. + ..+-||.+. |+. .++.............-..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34579999999999999999997542211 1 111122111 000 0000000000000000012345
Q ss_pred CCEEEEeCCCCcch---hHHHHh---cccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-------eEEEEeecccc
Q 000625 857 PGLLVIDTPGHESF---TNLRSR---GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-------FIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F---~~~r~r---g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-------~IVaINKiDl~ 922 (1384)
..++||||||...+ ...... +...+.-.+||++++.+....+.-.+.+....++| -=|++||+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 68999999996633 222222 23334566999999987665554444444443332 24778999975
No 333
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.32 E-value=1.3e-07 Score=99.33 Aligned_cols=163 Identities=20% Similarity=0.181 Sum_probs=107.7
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
...+-. |.|+|..++|||+++.+.++.++.......|..+.....+.|+. ...-.+.|||..|++
T Consensus 22 r~hL~k--~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd-------------~t~vRlqLwdIagQe 86 (229)
T KOG4423|consen 22 REHLFK--VLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDD-------------KTIVRLQLWDIAGQE 86 (229)
T ss_pred hhhhhh--hheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccCh-------------HHHHHHHHhcchhhh
Confidence 344554 89999999999999999988776544433333332222222221 111248899999999
Q ss_pred chhHHHHhcccccceeEEEeeccCCCCHHHHHHHH-HHHh-----cC--CceEEEEeecccccCcccCCCchHHHHHHHh
Q 000625 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN-LLKM-----RN--TEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~-llk~-----~~--vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
.|.+|..-+++.+.++.+|+|.+..........|. -+-. .+ +|+|+..||||.-. |-..
T Consensus 87 rfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~-~a~~------------ 153 (229)
T KOG4423|consen 87 RFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK-SAKN------------ 153 (229)
T ss_pred hhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh-Hhhh------------
Confidence 99999999999999999999998865543333332 2211 22 57899999999852 1100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 941 NTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 941 ~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.....+.+...++|| .-++.||++.+.||++....|+..
T Consensus 154 ---------~~~~~~d~f~kengf--------------~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 154 ---------EATRQFDNFKKENGF--------------EGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred ---------hhHHHHHHHHhccCc--------------cceeeeccccccChhHHHHHHHHH
Confidence 001122233344443 468899999999999988887754
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.24 E-value=3.7e-06 Score=98.77 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCcchhHH-------HHhc-----ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTNL-------RSRG-----SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~-------r~rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+... ..+. ...++.++||+|++.|.. ...........--+.-+++||+|..
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~~~~giIlTKlD~t 272 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAVGLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhCCCCEEEEECCCCC
Confidence 457999999996543221 1111 234788999999997642 2222222111112457899999964
No 335
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.24 E-value=1.5e-06 Score=99.87 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=59.9
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEe--eeeeEecccccccchhhcccccccCCCCEEEEeCCCCc------
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQ--IGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE------ 868 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~--iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe------ 868 (1384)
|+|+|.+++|||||+++|++.++..+..++.|.+ +|...++.......+.... ...+-...|.|+||||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~-~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVK-PKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhC-CceeeeeEEEEEECCCcCCCCchh
Confidence 5899999999999999999988766666776644 4444443321111110000 001111259999999943
Q ss_pred -chhHHHHhcccccceeEEEeeccC
Q 000625 869 -SFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 869 -~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.+.+.....++.||++|+|||+..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 233344455678999999999853
No 336
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.19 E-value=3.7e-06 Score=99.66 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=62.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc---
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES--- 869 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~--- 869 (1384)
+.|+|+|.+++|||||+++|++..+.....++.|. .+|...++............ ...+....|.|+||||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~-p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK-PKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcC-CccccCceEEEEECCCCCCCCC
Confidence 56999999999999999999988766566666664 45555554421110000000 0011123599999999432
Q ss_pred ----hhHHHHhcccccceeEEEeeccC
Q 000625 870 ----FTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 870 ----F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
..+.....++.||++|+|||+..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 23344456788999999999853
No 337
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.19 E-value=4.2e-06 Score=94.98 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred cchhHHHHhcccccceeEEEeeccCCC-CHHHHH-HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHH
Q 000625 868 ESFTNLRSRGSGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ 945 (1384)
Q Consensus 868 e~F~~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~ 945 (1384)
+.|..++...++.+|++|+|+|+.+.. ....+. ++..+...++|+|||+||+||... ... .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~------~~~----~------- 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD------EDM----E------- 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC------HHH----H-------
Confidence 566667777899999999999998643 443333 344555678999999999999621 000 0
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 946 NEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 946 ~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
......+... .++++.+||++|.||.+|+..|..
T Consensus 87 -------~~~~~~~~~~---------------g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 -------KEQLDIYRNI---------------GYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -------HHHHHHHHHC---------------CCeEEEEecCCchhHHHHHhhhcC
Confidence 0111122221 248999999999999999987753
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=5.4e-06 Score=95.47 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCcchhHHHH-------hc-----ccccceeEEEeeccCCCCHHHHHHHHHH-HhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTNLRS-------RG-----SGLCDIAILVVDIMHGLEPQTIESLNLL-KMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~-------rg-----~~~aDiaILVVDa~~Gv~~QT~E~l~ll-k~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+..... +. ...+|.++||+|++.| ..+...+... ...+ +.-+++||+|..
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~~~~-~~g~IlTKlDe~ 230 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNEAVG-LTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHhhCC-CCEEEEEccCCC
Confidence 35799999999765432211 11 2248999999999754 3333333222 2233 467899999975
No 339
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.18 E-value=5.6e-06 Score=87.73 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCcchhHHH--------HhcccccceeEEEeeccCCCCHH--HHHHHHHHHhcCCceEEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTNLR--------SRGSGLCDIAILVVDIMHGLEPQ--TIESLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r--------~rg~~~aDiaILVVDa~~Gv~~Q--T~E~l~llk~~~vP~IVaINKiDl 921 (1384)
.+.+.||||||...-..+. ......+|.+|+|||+.+..... ......++... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 4678999999964322221 22344589999999987643211 11223444444 3789999996
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=4.9e-06 Score=90.40 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHH
Q 000625 865 PGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDV 944 (1384)
Q Consensus 865 PGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v 944 (1384)
|.+..|..++...+..+|++|+|||+.+......... .....+.|+|+|+||+|++..+ .. ...+
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~-----~~-~~~~------- 83 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD-----KN-LVRI------- 83 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC-----CC-HHHH-------
Confidence 4455578999999999999999999987543222222 2233578999999999996311 00 0000
Q ss_pred HHHHHHHHHHHHH--HHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 945 QNEFNMRLVQIVT--QLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 945 ~~ef~~~i~~I~~--~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
..... .+...++ ...++|++||++|.||.+|+..|..++
T Consensus 84 --------~~~~~~~~~~~~~~------------~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 --------KNWLRAKAAAGLGL------------KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred --------HHHHHHHHHhhcCC------------CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 00000 0111111 113689999999999999998887654
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.14 E-value=6.3e-06 Score=99.70 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcchhH----HHHh--cccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTN----LRSR--GSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~----~r~r--g~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..... .+.. ....+|.++||+|++.|... ...+......--+.-|++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 35799999999654321 1111 23357889999999887433 222333333223567899999974
No 342
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=1.6e-05 Score=86.84 Aligned_cols=115 Identities=25% Similarity=0.327 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccc-----cccCceeE--eeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQE-----GEAGGITQ--QIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~-----ge~gGITq--~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.+|.|+|..|.|||||++.|....+.. +.+-.|++ .|.+... .+.+.... -.|++|||||+
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~th---vieE~gVk---------lkltviDTPGf 114 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITH---VIEEKGVK---------LKLTVIDTPGF 114 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeee---eeeecceE---------EEEEEecCCCc
Confidence 469999999999999999998655432 11112222 2222211 11111111 14999999997
Q ss_pred cchhHH--------------------------HHhcccc--cceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEEEee
Q 000625 868 ESFTNL--------------------------RSRGSGL--CDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 868 e~F~~~--------------------------r~rg~~~--aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
-+|++. |.+-+.. .+++++.|..+ |.+.|-.++++..|... +.+|-||-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-vNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-VNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-heeeeeEee
Confidence 665432 2222222 46788888775 67889999999877653 467788899
Q ss_pred cccc
Q 000625 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 194 aDtl 197 (336)
T KOG1547|consen 194 ADTL 197 (336)
T ss_pred cccc
Confidence 9976
No 343
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.11 E-value=2.7e-05 Score=96.84 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=66.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccc--cCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh-
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGE--AGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT- 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge--~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~- 871 (1384)
..|+|||.+|+|||||+|+|++..+.... .+++|. +..+... +....|+||||||..+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~----------------idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL----------------VQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE----------------ECCceEEEEECCCCCcccc
Confidence 45999999999999999999987643221 123332 2111111 112459999999976531
Q ss_pred -----HH----HHhccc--ccceeEEEeeccCC-CCHHHHHHHHHHHh-cC----CceEEEEeecccc
Q 000625 872 -----NL----RSRGSG--LCDIAILVVDIMHG-LEPQTIESLNLLKM-RN----TEFIVALNKVDRL 922 (1384)
Q Consensus 872 -----~~----r~rg~~--~aDiaILVVDa~~G-v~~QT~E~l~llk~-~~----vP~IVaINKiDl~ 922 (1384)
.. ..+.+. .+|++|||+..+.. ........++.+.. .| -.+||++|..|.+
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 11 122333 47888888876532 22233344444432 22 3689999999987
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.10 E-value=1.1e-05 Score=85.03 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=60.4
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHH
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLV 953 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~ 953 (1384)
+.+..+|++|+|||+.+++..+......++... ++|+|+|+||+|++.. . .+.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~------~-------------------~~~ 58 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT------W-------------------VTA 58 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH------H-------------------HHH
Confidence 467789999999999987766666666666543 4899999999999621 0 001
Q ss_pred HHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 954 QIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 954 ~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
..+..+... + .+.+|++||++|.|+..|+..|..+
T Consensus 59 ~~~~~~~~~------------~--~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 59 RWVKILSKE------------Y--PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred HHHHHHhcC------------C--cEEEEEeeccccccHHHHHHHHHHH
Confidence 111112110 0 1236899999999999999888654
No 345
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.09 E-value=7.6e-05 Score=84.74 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=42.2
Q ss_pred cCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCc
Q 000625 908 RNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAI 987 (1384)
Q Consensus 908 ~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~ 987 (1384)
+|+||+||++|||.+. .|.......-..|.-....|+.++..+| ..+|.+|++
T Consensus 221 lGi~vlVV~TK~D~~s------------~leke~eyrDehfdfiq~~lRkFCLr~G---------------aaLiyTSvK 273 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVS------------VLEKEHEYRDEHFDFIQSHLRKFCLRYG---------------AALIYTSVK 273 (473)
T ss_pred CCCcEEEEEeccchhh------------HhhhcchhhHHHHHHHHHHHHHHHHHcC---------------ceeEEeecc
Confidence 3789999999999851 2222222222333333334444444444 478999999
Q ss_pred CCCChhhHHHHHHH
Q 000625 988 SGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 988 tGeGI~eLl~~L~~ 1001 (1384)
..-||+-|..+|+.
T Consensus 274 E~KNidllyKYivh 287 (473)
T KOG3905|consen 274 ETKNIDLLYKYIVH 287 (473)
T ss_pred cccchHHHHHHHHH
Confidence 99999877777664
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.06 E-value=1.1e-05 Score=86.31 Aligned_cols=99 Identities=22% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCCCcc-hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 864 TPGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 864 TPGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
-|||-. ..+.....+..+|++|+|+|+.++........+..+ .+.|+|+++||+|++.. . .+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~-------~---~~----- 64 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP-------K---KT----- 64 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh-------H---HH-----
Confidence 478754 455666788899999999999887665444444443 35799999999998621 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHH
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQ 1004 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~ 1004 (1384)
...+..+... ...++++||++|.|+..|+..|...+.
T Consensus 65 ----------~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 65 ----------KKWLKYFESK---------------GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ----------HHHHHHHHhc---------------CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 0011111111 136899999999999999998876653
No 347
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=2.5e-05 Score=91.72 Aligned_cols=116 Identities=25% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCc----e--eEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGG----I--TQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-~gG----I--Tq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
...+.|+|..|.|||||++.|+.+.+.... ..+ + |..|..+.+.. ...+ +. -.|++|||||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~i---ee~g------~~---l~LtvidtPG 88 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEI---EENG------VK---LNLTVIDTPG 88 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeee---cCCC------eE---EeeEEeccCC
Confidence 367999999999999999999877544221 000 0 11111111100 0000 00 2499999999
Q ss_pred CcchhHH------------------------HHh-ccc--ccceeEEEeec-cCCCCHHHHHHHHHHHhcCCceEEEEee
Q 000625 867 HESFTNL------------------------RSR-GSG--LCDIAILVVDI-MHGLEPQTIESLNLLKMRNTEFIVALNK 918 (1384)
Q Consensus 867 He~F~~~------------------------r~r-g~~--~aDiaILVVDa-~~Gv~~QT~E~l~llk~~~vP~IVaINK 918 (1384)
.-++... ..| .+. ..+++++.|.. .||+.|..++.++.+... +.+|.||-|
T Consensus 89 fGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~-vNiIPVI~K 167 (366)
T KOG2655|consen 89 FGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK-VNLIPVIAK 167 (366)
T ss_pred CcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc-ccccceeec
Confidence 7654321 001 122 36789999987 478999999998877654 788999999
Q ss_pred cccc
Q 000625 919 VDRL 922 (1384)
Q Consensus 919 iDl~ 922 (1384)
.|.+
T Consensus 168 aD~l 171 (366)
T KOG2655|consen 168 ADTL 171 (366)
T ss_pred cccC
Confidence 9986
No 348
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.05 E-value=1.1e-05 Score=89.12 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCc--ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch---
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTN--VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF--- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~--v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F--- 870 (1384)
.|.++|.+.+|||||+..|.++. |..++....|.-.| ...|+.+.|.++|.||.-.=
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG------------------~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG------------------VIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc------------------eEeccccceeeecCcchhccccc
Confidence 48999999999999999998653 44443222111111 12356678999999995321
Q ss_pred ----hHHHHhcccccceeEEEeeccCCC
Q 000625 871 ----TNLRSRGSGLCDIAILVVDIMHGL 894 (1384)
Q Consensus 871 ----~~~r~rg~~~aDiaILVVDa~~Gv 894 (1384)
...+...++.|+++++|+|+...+
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCcc
Confidence 223344567799999999987543
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.05 E-value=3.5e-05 Score=81.09 Aligned_cols=83 Identities=23% Similarity=0.249 Sum_probs=56.5
Q ss_pred ceeEEEeeccCCCCHHHHHHH-HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000625 882 DIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLK 960 (1384)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~ 960 (1384)
|++|+|+|+.++......... ..+...++|+|+|+||+|++.. . . +...+..+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~------~----~---------------~~~~~~~~~ 55 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK------E----V---------------LRKWLAYLR 55 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH------H----H---------------HHHHHHHHH
Confidence 789999999887655544444 4666778999999999998621 0 0 001111111
Q ss_pred HcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH
Q 000625 961 EQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT 1003 (1384)
Q Consensus 961 ~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~ 1003 (1384)
.. ....+|++||++|.|+..|+..|....
T Consensus 56 ~~--------------~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 56 HS--------------YPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred hh--------------CCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 124789999999999999999887654
No 350
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.04 E-value=1.5e-05 Score=97.19 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCcchhHH------HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNL------RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~------r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl~ 922 (1384)
..+.||||||+..+... ....+..+|.+|||+|++.| ..+...+..... .+++ -|++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC
Confidence 37999999996654322 12334568999999999887 233333332221 2443 5789999964
No 351
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.03 E-value=7.9e-05 Score=91.52 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
+....|+|||..++||||||.+|.+.. ....| .-++.+|+...... + .. ...++||=..|-..|.
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~--~aLeYty~~v~d~~-~-------dd--~~rl~vw~L~g~~~~~ 87 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKG--LALEYTYLDVKDED-R-------DD--LARLNVWELDGDPSHS 87 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCC--cccceEEEeeccCc-C-------Cc--CceeeEEEcCCCcchH
Confidence 344569999999999999999986532 11122 22444444322110 0 01 1235555555555566
Q ss_pred HHHHhcccc---cc-eeEEEeeccCC
Q 000625 872 NLRSRGSGL---CD-IAILVVDIMHG 893 (1384)
Q Consensus 872 ~~r~rg~~~---aD-iaILVVDa~~G 893 (1384)
.+....+.. .+ ++|||+|.+..
T Consensus 88 ~LLk~~lt~~~l~~t~vvIvlDlS~P 113 (472)
T PF05783_consen 88 DLLKFALTPENLPNTLVVIVLDLSKP 113 (472)
T ss_pred hHhcccCCcccccceEEEEEecCCCh
Confidence 655544432 33 57778887754
No 352
>PRK12289 GTPase RsgA; Reviewed
Probab=98.02 E-value=2.2e-05 Score=93.33 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=59.7
Q ss_pred HhcccccceeEEEeeccCC-CCH-HHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHH
Q 000625 875 SRGSGLCDIAILVVDIMHG-LEP-QTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRL 952 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G-v~~-QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i 952 (1384)
...+..+|++|||+|+.+. +.+ +...+|..+...++|+|||+||+|++.. .. +
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~------~~-------------------~ 138 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP------TE-------------------Q 138 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh------HH-------------------H
Confidence 3457889999999999864 344 2344555566678999999999999621 00 0
Q ss_pred HHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 953 VQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 953 ~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
......+...| +++|++||++|.||.+|+..|...
T Consensus 139 ~~~~~~~~~~g---------------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 139 QQWQDRLQQWG---------------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHHhcC---------------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 11111222222 478999999999999999887643
No 353
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.99 E-value=3.5e-05 Score=79.21 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=102.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.++-...|.++|....|||||+-...+...... .|+..|..+..-.. .-++.. ..+.|||..|++.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~----~~q~~GvN~mdkt~-~i~~t~---------IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE----YTQTLGVNFMDKTV-SIRGTD---------ISFSIWDLGGQRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHH----HHHHhCccceeeEE-EecceE---------EEEEEEecCCcHh
Confidence 344445689999999999999999876654321 24444433322110 000000 1388999999999
Q ss_pred hhHHHHhcccccceeEEEeeccCCCCHHHH-HHHHHHHhcCC--ceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 870 FTNLRSRGSGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNT--EFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 870 F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~v--P~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
|.++..-....+-++++++|.+....-..+ ++.++++..+. --|++.+|.|+.-.. ..+....+
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~l----p~e~Q~~I--------- 148 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDL----PPELQETI--------- 148 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcC----CHHHHHHH---------
Confidence 999998888888889999999875443333 44577777662 235679999974210 11111111
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
..+...+. . --+.++|.+|+-...||..++..+.
T Consensus 149 ---------~~qar~YA--k---------~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 149 ---------SRQARKYA--K---------VMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred ---------HHHHHHHH--H---------HhCCcEEEeeccccccHHHHHHHHH
Confidence 11111110 0 0135899999999999998887664
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=1.2e-05 Score=88.21 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=38.6
Q ss_pred CCEEEEeCCCCcchhHHH----H--hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNLR----S--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r----~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..+.... . ......+-++||++++.+..... .........++- =+++||+|-.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 469999999966543221 1 11224678999999988643222 334444444544 4559999975
No 355
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.98 E-value=4.1e-05 Score=84.24 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=51.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc--ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch-hH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ--EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-TN 872 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~--~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-~~ 872 (1384)
.|+++|.+.+||||||..|+.+.-. .+++...|--.| ...|+...|.++|.||...= +.
T Consensus 64 RValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG------------------vi~y~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG------------------VIHYNGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc------------------eEEecCceEEEecCccccccccc
Confidence 4999999999999999999876432 222211111111 12345566999999995321 21
Q ss_pred ------HHHhcccccceeEEEeeccCC
Q 000625 873 ------LRSRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 873 ------~r~rg~~~aDiaILVVDa~~G 893 (1384)
.+...++.+|++++|+|++.+
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 126 GKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CCCCCceEEEEeecccEEEEEecCCcc
Confidence 222335669999999999753
No 356
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.6e-05 Score=92.61 Aligned_cols=64 Identities=17% Similarity=0.067 Sum_probs=37.9
Q ss_pred CCEEEEeCCCCcchhHH----HHhc--ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNL----RSRG--SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~----r~rg--~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+...... ..+. ....+.++||+|++.+. ......+......+ .-=|++||+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 47999999996553221 2222 23467889999986432 12234444444433 235788999975
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.98 E-value=2e-05 Score=90.98 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCcc-hhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHH
Q 000625 865 PGHES-FTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTD 943 (1384)
Q Consensus 865 PGHe~-F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~ 943 (1384)
|||.. ........+..+|++|+|+|+..++.........++ .+.|+|+|+||+|++.. .. +
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~------~~----~------ 66 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP------AV----T------ 66 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH------HH----H------
Confidence 88854 345566778899999999999876665444444444 36899999999998620 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 944 VQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 944 v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
......+... .+++|++||.+|.|+..|+..|..+++.
T Consensus 67 ---------~~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 67 ---------KQWLKYFEEK---------------GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---------HHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 0011111111 1378999999999999999988776653
No 358
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.95 E-value=1.4e-05 Score=84.21 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
...|+|+|.+|+|||||+|+|++... ..+..+|.|.+...+ +.. .++.||||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~--~~~-----------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI--TLM-----------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE--EcC-----------------CCEEEEECcCC
Confidence 34688999999999999999997654 455667766654322 211 35899999994
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=3.4e-05 Score=91.44 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+..+|+|+|+.|+||||++..|..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 360
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.94 E-value=1.5e-05 Score=85.69 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++... ..+..+|+|.++....+. .++.|+||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-------------------CCEEEEECcCC
Confidence 345699999999999999999997654 566678888765443321 24899999994
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=4.2e-05 Score=94.00 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccccc---ccCceeE---eeeeeE----------ecccccccchhhccc-ccccC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEG---EAGGITQ---QIGATY----------FPAENIRERTRELKA-NATLK 855 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~g---e~gGITq---~iga~~----------~~~~~i~~~~~~i~~-~~~~~ 855 (1384)
+..+|+|+|..|+|||||+..|...-...+ ...-|+. .+|+.. +++..... ...+.. -..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHhc
Confidence 346899999999999999998864211110 0011111 111100 00000000 000000 00233
Q ss_pred CCCEEEEeCCCCcchhHHH------HhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTNLR------SRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r------~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||...+.... .+... ....+|||+++.+.... .+.+..+... .+.-|++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 4679999999965433221 11112 34567888887643222 2334433333 3677999999974
No 362
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.89 E-value=2.7e-05 Score=73.56 Aligned_cols=75 Identities=31% Similarity=0.437 Sum_probs=60.4
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccC
Q 000625 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1342 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~ 1342 (1384)
+|+ +..+.|+.-+|..|+|++|.+|.+.... ..++|.||+.++.++++|..|+.|+|.|.+.+ . ++|..
T Consensus 8 ~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~-------~-~~i~~ 77 (83)
T cd03696 8 VFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVRSIQVHGKDVEEAKAGDRVALNLTGVD-------A-KDLER 77 (83)
T ss_pred EEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCC-------H-HHcCC
Confidence 554 2234455559999999999999984332 47999999999999999999999999998753 2 58999
Q ss_pred CCeEEE
Q 000625 1343 EDELVS 1348 (1384)
Q Consensus 1343 ~d~l~s 1348 (1384)
||+|.|
T Consensus 78 G~vl~~ 83 (83)
T cd03696 78 GDVLSS 83 (83)
T ss_pred ccEEcC
Confidence 999875
No 363
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.88 E-value=8.7e-05 Score=87.24 Aligned_cols=126 Identities=25% Similarity=0.219 Sum_probs=72.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEee-eeeEecccccccchhhccc--------------ccc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI-GATYFPAENIRERTRELKA--------------NAT 853 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~i-ga~~~~~~~i~~~~~~i~~--------------~~~ 853 (1384)
|+.+|.|.-|+||||||++|+... |-..+.|-|.++- +........+.+.+..+-| ...
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 788999999999999999998543 2334444444441 1111111111111111110 001
Q ss_pred cCCCCEEEEeCCCCcch-------hH-HHHhcccccceeEEEeeccCCCCHHH---HHHHHHHHhcCCceEEEEeecccc
Q 000625 854 LKVPGLLVIDTPGHESF-------TN-LRSRGSGLCDIAILVVDIMHGLEPQT---IESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F-------~~-~r~rg~~~aDiaILVVDa~~Gv~~QT---~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.++||-|-|...= .. ...+..-..|.+|-|||+.+...... .....++... =+|++||+|++
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 22367999999995442 22 11222334688999999988655433 2333444444 38999999998
Q ss_pred c
Q 000625 923 Y 923 (1384)
Q Consensus 923 ~ 923 (1384)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 3
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.86 E-value=3.6e-05 Score=79.76 Aligned_cols=50 Identities=26% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeecccc
Q 000625 873 LRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDRL 922 (1384)
Q Consensus 873 ~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl~ 922 (1384)
...+.+..||++|+|+|+.++...+......++... +.|+|+|+||+|++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 345678889999999999998877766777777665 89999999999986
No 365
>PRK00098 GTPase RsgA; Reviewed
Probab=97.83 E-value=4.9e-05 Score=88.81 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=55.4
Q ss_pred ccccceeEEEeeccCCC-CHHH-HHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000625 878 SGLCDIAILVVDIMHGL-EPQT-IESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT-~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
+..+|++|||+|+.+.. .... ..++..+...++|+|||+||+|+... .. .+...
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~------------------~~~~~ 133 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LE------------------EAREL 133 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HH------------------HHHHH
Confidence 47899999999997642 2222 34455567788999999999998521 00 00111
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+...| ++++++||++|.||.+|+..|.
T Consensus 134 ~~~~~~~g---------------~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 134 LALYRAIG---------------YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred HHHHHHCC---------------CeEEEEeCCCCccHHHHHhhcc
Confidence 11121111 4899999999999998887663
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.82 E-value=1.3e-05 Score=85.02 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.1
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++.+++|+|+.|+|||||+|.|+...
T Consensus 31 ~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 31 ELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44667889999999999999999999763
No 367
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=3.7e-05 Score=90.21 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCc--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC-----
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH----- 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gG--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH----- 867 (1384)
+.|+|+|-+++|||||+++|+...+....++. |-...|..++|.......+.-..+.-.+....+.|+|.+|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 56899999999999999999988765444444 44566777777643333332223222233346999999993
Q ss_pred --cchhHHHHhcccccceeEEEeeccC
Q 000625 868 --ESFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 --e~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
+-..|.....++.+|.++.||++..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2345556666888999999999974
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=97.81 E-value=6.3e-05 Score=91.66 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCcchhH-HHH-----hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTN-LRS-----RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~-~r~-----rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl 921 (1384)
.+.+.||||||+..+.. ++. ..+..++.++||+|++.| ......+..... .++ .-|++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 35699999999554311 111 112356788999998754 223333333222 233 3578899995
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.81 E-value=5.1e-05 Score=88.16 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=68.3
Q ss_pred CCCCcch-hHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhH
Q 000625 864 TPGHESF-TNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNT 942 (1384)
Q Consensus 864 TPGHe~F-~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~ 942 (1384)
-|||..= .......+..+|++|+|+|+..++.........++. +.|+|+|+||+|+... . .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~---~------ 68 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------E---V------ 68 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------H---H------
Confidence 4898543 344557788999999999998877655544444443 7899999999998620 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHHHH
Q 000625 943 DVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQK 1005 (1384)
Q Consensus 943 ~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~~~ 1005 (1384)
+......+... .++++++||.+|.|+..|+..|..+++.
T Consensus 69 ---------~~~~~~~~~~~---------------~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 69 ---------TKKWIEYFEEQ---------------GIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---------HHHHHHHHHHc---------------CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 00111112111 1478999999999999999988777654
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.80 E-value=7.5e-05 Score=79.90 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCcchh----HHHHhc--ccccceeEEEeeccCCCCHHHHHH-HHHHHhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFT----NLRSRG--SGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~----~~r~rg--~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||...+. ...... +..+|.+||||++..+. .+... +.++...+ ..-+++||+|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--DAVNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--HHHHHHHHHHhhCC-CCEEEEECCcCC
Confidence 4568999999986432 211111 23489999999996543 33333 33444455 366788999986
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.79 E-value=3.8e-05 Score=80.82 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+.+.|+|+|++++|||||+++|++.. ...+..+|+|.+.....+. .+++||||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-------------------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-------------------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-------------------CCEEEEECCCC
Confidence 45669999999999999999999765 3344445666654433221 35899999994
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.78 E-value=3.7e-05 Score=79.66 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.|+|+|.+++|||||+++|++... ......|.|.++..+.+ ..++.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL-------------------TPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe-------------------CCCEEEEECCCc
Confidence 599999999999999999997654 23333444444322111 125899999996
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.78 E-value=8.4e-05 Score=90.49 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCcchhHHHH------hcccccceeEEEeeccCCCCHHHHHHHHHHH-hcCCceEEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTNLRS------RGSGLCDIAILVVDIMHGLEPQTIESLNLLK-MRNTEFIVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~------rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk-~~~vP~IVaINKiDl 921 (1384)
.+.+.||||||...+..... .....+|.++||+|++.| ........... ..++ .=|++||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccC
Confidence 34699999999544321111 123357889999999764 23333333333 2232 3567999995
No 374
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.75 E-value=7.5e-05 Score=88.02 Aligned_cols=68 Identities=21% Similarity=0.144 Sum_probs=52.1
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----------CCHHHHHHHHHHHh----cCCceEEEEeec
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKV 919 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKi 919 (1384)
....+.+||++|+..+...|..++..++++|+|||.++- -...++..+..+.. .++|+||++||+
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 344588999999999999999999999999999999762 12233333333322 468999999999
Q ss_pred ccc
Q 000625 920 DRL 922 (1384)
Q Consensus 920 Dl~ 922 (1384)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 974
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00016 Score=87.15 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccC-ceeE---eeeee----------EecccccccchhhcccccccCC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAG-GITQ---QIGAT----------YFPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~g-GITq---~iga~----------~~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
.++.+|+|+|++|+||||++.+|.... ...+... -++. .+++. .++...... ...+.....-..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-~~~l~~~l~~~~ 299 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-IKKFKETLARDG 299 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-HHHHHHHHHhCC
Confidence 345679999999999999999997422 1111100 0111 11100 000000000 000000001124
Q ss_pred CCEEEEeCCCCcchhH----HHHhcc-----cccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTN----LRSRGS-----GLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~----~r~rg~-----~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..... .+...+ ....-.+||+|++.+.. +....+......+ +-=+++||+|-.
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 5799999999754311 111111 12446889999987642 2233333333333 345778999975
No 376
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.75 E-value=8.1e-05 Score=83.49 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=52.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC--ccccccc-CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcch--
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGT--NVQEGEA-GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESF-- 870 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t--~v~~ge~-gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F-- 870 (1384)
+|+|+|+.++|||||||+|++. .+..+.. ...|..|-.+..++.. .....|+||||||..+.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-------------~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-------------GKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-------------CCcceEEEEecCCcCcccc
Confidence 5899999999999999999987 5443321 2233333333333321 01235999999995432
Q ss_pred ----hHHHHhccc--ccceeEEEeeccC
Q 000625 871 ----TNLRSRGSG--LCDIAILVVDIMH 892 (1384)
Q Consensus 871 ----~~~r~rg~~--~aDiaILVVDa~~ 892 (1384)
..++..++. .+|++|+.++.+.
T Consensus 76 ~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 76 GEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 222233333 4899988887753
No 377
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.73 E-value=0.00013 Score=70.30 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=62.4
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---cc
Q 000625 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QG 1091 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~g 1091 (1384)
.||+++|.++|.+.|.|+++.|.|.+|+|+.||.|.+++++ .... |+++++++..+..| ..
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~--------------V~sI~~~~~~~~~a~aG~~ 66 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGE--------------VKSVEMHHEPLEEALPGDN 66 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEE--------------EEEEEECCcCcCEECCCCE
Confidence 47899999999999999999999999999999999987654 2333 44555555555433 44
Q ss_pred ceeeccccccccCCCceEEeCCC
Q 000625 1092 IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1092 v~i~~~gL~~~~aG~~l~v~~~e 1114 (1384)
+.+.+.+++......+++++.++
T Consensus 67 v~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 67 VGFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEEECCCCHHHcCCcCEEccCC
Confidence 77888887665555666666554
No 378
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=5.2e-05 Score=82.41 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc---------cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV---------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v---------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTP 865 (1384)
..|+|+|.+|+|||||+++|++... .....+|+|.+.-.+.+. ..+.|||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-------------------~~~~~~DtP 188 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-------------------NGKKLYDTP 188 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-------------------CCCEEEeCc
Confidence 4599999999999999999997543 223334555543322221 148999999
Q ss_pred CC
Q 000625 866 GH 867 (1384)
Q Consensus 866 GH 867 (1384)
|.
T Consensus 189 G~ 190 (190)
T cd01855 189 GI 190 (190)
T ss_pred CC
Confidence 94
No 379
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.69 E-value=8e-05 Score=78.20 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
...+.||||||..... ...+..+|.+|+|+... ...++..+.. .....--+++|||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe---~~D~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG---AGDDIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC---chhHHHHhhh-hHhhhcCEEEEeCCC
Confidence 4579999999964322 34778899999998765 2223323222 233345689999998
No 380
>PRK12288 GTPase RsgA; Reviewed
Probab=97.68 E-value=0.00033 Score=83.47 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=58.4
Q ss_pred ccccceeEEEeeccCCCCHHHHHHH-HHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000625 878 SGLCDIAILVVDIMHGLEPQTIESL-NLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~E~l-~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
+..+|.++||++....+.+..+.-| ..+...++|+|||+||+|++..+ . ... +....
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~------~-~~~---------------~~~~~ 175 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE------G-RAF---------------VNEQL 175 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH------H-HHH---------------HHHHH
Confidence 4568999999998777766655544 44556789999999999996310 0 000 01111
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
..+... .+++|+|||++|.||.+|+.+|..
T Consensus 176 ~~y~~~---------------g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 176 DIYRNI---------------GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred HHHHhC---------------CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 112111 148999999999999999988864
No 381
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00019 Score=82.57 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccc-cCceeEe---eee-------------eEecccccccchhhcccccccC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-AGGITQQ---IGA-------------TYFPAENIRERTRELKANATLK 855 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-~gGITq~---iga-------------~~~~~~~i~~~~~~i~~~~~~~ 855 (1384)
+.++|+|+|.+|+|||||+..|.......+. .+-|+.+ +++ .++...........+..-....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4578999999999999999988643211111 1111111 110 0000000000000000000112
Q ss_pred CCCEEEEeCCCCcchhHH----HH--hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTNL----RS--RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~----r~--rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+.||||||+..+... +. ......|.++||++++.+- .+....++.....+ +-=|++||+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~-~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIH-IDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCC-CCEEEEEeecCC
Confidence 357999999997643221 11 1233467889999986532 12223333333322 335789999975
No 382
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00025 Score=85.41 Aligned_cols=128 Identities=20% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCccccc-----ccCceeEee---eee----------Eecccccccchhhccc-cc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEG-----EAGGITQQI---GAT----------YFPAENIRERTRELKA-NA 852 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~g-----e~gGITq~i---ga~----------~~~~~~i~~~~~~i~~-~~ 852 (1384)
.++.+|+++|+.|+||||++..|...-.... ...-||.+. ++. -+|+..... ...+.. -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~-~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES-FKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-HHHHHHHHH
Confidence 3456899999999999999998863211110 001111111 000 000000000 000000 01
Q ss_pred ccCCCCEEEEeCCCCcchhH----HHHhcccc--cc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 853 TLKVPGLLVIDTPGHESFTN----LRSRGSGL--CD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 853 ~~~~~~i~~IDTPGHe~F~~----~r~rg~~~--aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.+....+.||||||+..+.. .+...+.. ++ -.+||+|++.+..... +.+......+ +-=+++||+|-.
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 22446799999999654322 11122222 23 5889999988732222 3333333222 345789999975
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00031 Score=85.22 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccc-c-ccCc-eeEe---eeeeE----------ecccccccchhhcccccccCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQE-G-EAGG-ITQQ---IGATY----------FPAENIRERTRELKANATLKV 856 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~-g-e~gG-ITq~---iga~~----------~~~~~i~~~~~~i~~~~~~~~ 856 (1384)
...+|+|+|..|+|||||+..|.+..+.. + ...+ |+.+ +|+.. ++.............-..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45589999999999999999886532111 1 1111 1111 11100 000000000000000112345
Q ss_pred CCEEEEeCCCCcchhHHH----H--hcccccceeEEEeeccCCCCHHHHHH-HHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNLR----S--RGSGLCDIAILVVDIMHGLEPQTIES-LNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r----~--rg~~~aDiaILVVDa~~Gv~~QT~E~-l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||+|........ . .......-.+||++++.+ .++... +......+ +-=+++||+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~-~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHG-IHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEeeeCC
Confidence 679999999965432211 1 122334567899998753 333332 23333332 235788999975
No 384
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.65 E-value=8.5e-05 Score=86.38 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++..+ ..+..+|+|.++....+ . .++.||||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G-----------------KGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C-----------------CcEEEEECCCc
Confidence 345699999999999999999998764 55667888887643221 1 24899999996
No 385
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00037 Score=85.24 Aligned_cols=126 Identities=19% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc--cccc-cCceeEee---eee----------Eecccccccchhhccc-ccccCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV--QEGE-AGGITQQI---GAT----------YFPAENIRERTRELKA-NATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v--~~ge-~gGITq~i---ga~----------~~~~~~i~~~~~~i~~-~~~~~~ 856 (1384)
..+|+|+|+.|+||||++-.|..... ..+. ..-|+.+. |+. -+++...... ..+.. -..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~-~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP-KELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH-HhHHHHHHHhCC
Confidence 34799999999999999988864322 1111 11111111 100 0000000000 00000 001234
Q ss_pred CCEEEEeCCCCcchh----HHHHhc---ccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFT----NLRSRG---SGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~----~~r~rg---~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.||||||+..+. ...... .....-++||++++.+. ......+..+...++ --|++||+|-.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 579999999975542 111111 22345678889886542 122233344443332 35889999975
No 386
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.59 E-value=0.00013 Score=84.45 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+...|+|+|.+++|||||+++|++.. ...+..+|+|.......+ . .++.||||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~-----------------~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S-----------------DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C-----------------CCEEEEECCCc
Confidence 44669999999999999999999765 344566777766532221 1 24899999996
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=97.59 E-value=0.00018 Score=86.07 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=58.6
Q ss_pred ccccceeEEEeeccCCCCHHHH-HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHH
Q 000625 878 SGLCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIV 956 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~ 956 (1384)
+..+|.++||+++...+.+..+ .+|.++...++|.|||+||+||+.. .. ...
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--------~~-------------------~~~ 162 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--------AE-------------------EKI 162 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--------HH-------------------HHH
Confidence 4678999999999888887555 4566778889999999999999621 00 001
Q ss_pred HHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHH
Q 000625 957 TQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLL 999 (1384)
Q Consensus 957 ~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L 999 (1384)
..+.... ..+++|++|+.+|.|+..|..+|
T Consensus 163 ~~~~~~~-------------~g~~Vi~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 163 AEVEALA-------------PGVPVLAVSALDGEGLDVLAAWL 192 (356)
T ss_pred HHHHHhC-------------CCCcEEEEECCCCccHHHHHHHh
Confidence 1121111 23589999999999998887765
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=4.7e-05 Score=91.21 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcc------cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcc
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNV------QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHES 869 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v------~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~ 869 (1384)
.|.|+|.+|+|||||+++|++... ..+..+|+|.++.. ++. ..++.||||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~-----------------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL-----------------DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe-----------------CCCCEEEECCCCCC
Confidence 599999999999999999997432 33444566655432 221 13478999999643
Q ss_pred hhHH---HH-------hcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 870 FTNL---RS-------RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 870 F~~~---r~-------rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
...+ +. .-.......+++++..+.+....+..+..+...+..|++++++-+.+
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 3211 11 11122455667777665444333333444444567788888888876
No 389
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.58 E-value=0.00013 Score=78.08 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
+.+.|+|+|.+++|||||+++|++..+ ..+...|+|.+...+.+. ..+.||||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-------------------CCEEEEECCCC
Confidence 345799999999999999999998664 233344555554332221 24899999996
No 390
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.57 E-value=0.00035 Score=95.38 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=68.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCccccccc--CceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEA--GGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~--gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..+.-|-.+|||++|+||||||.+. +-.+.-... ..-+..++.+. +|+ .|-.....||||+|.
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-------------~c~-wwf~~~avliDtaG~ 171 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-------------NCD-WWFTDEAVLIDTAGR 171 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-------------ccc-eEecCCEEEEcCCCc
Confidence 3456688999999999999999986 222221110 00011111110 000 112235789999992
Q ss_pred c---------------chhHHHH--hcccccceeEEEeeccCCCC--HHHH-HH-------HHHHH---hcCCceEEEEe
Q 000625 868 E---------------SFTNLRS--RGSGLCDIAILVVDIMHGLE--PQTI-ES-------LNLLK---MRNTEFIVALN 917 (1384)
Q Consensus 868 e---------------~F~~~r~--rg~~~aDiaILVVDa~~Gv~--~QT~-E~-------l~llk---~~~vP~IVaIN 917 (1384)
. .|..+.. |--...|+|||+||+.+=+. ++.+ .+ |..+. ...+|+.|++|
T Consensus 172 y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~T 251 (1169)
T TIGR03348 172 YTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLT 251 (1169)
T ss_pred cccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1 2333332 33456899999999976432 2111 11 12121 23589999999
Q ss_pred ecccccC
Q 000625 918 KVDRLYG 924 (1384)
Q Consensus 918 KiDl~~~ 924 (1384)
|||++.+
T Consensus 252 k~Dll~G 258 (1169)
T TIGR03348 252 KADLLAG 258 (1169)
T ss_pred cchhhcC
Confidence 9999865
No 391
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00036 Score=85.94 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
..||+|||+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 458999999999999999999753
No 392
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.56 E-value=5.7e-05 Score=81.60 Aligned_cols=125 Identities=23% Similarity=0.245 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee---------------eeEecccccccc-----hhhccccccc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG---------------ATYFPAENIRER-----TRELKANATL 854 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig---------------a~~~~~~~i~~~-----~~~i~~~~~~ 854 (1384)
|+++|.|..||||||||++|+.........+=|..++| ...+....+... ...+..-...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 89999999999999999999941111111111111111 111111111100 0000000112
Q ss_pred C--CCCEEEEeCCCCcchhHHH-----HhcccccceeEEEeeccCCCCHHHH--HHHHHHHhcCCceEEEEeecccc
Q 000625 855 K--VPGLLVIDTPGHESFTNLR-----SRGSGLCDIAILVVDIMHGLEPQTI--ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 855 ~--~~~i~~IDTPGHe~F~~~r-----~rg~~~aDiaILVVDa~~Gv~~QT~--E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
. .+.+.||-|.|......++ .......+.+|.|||+.+-....+. .+..++.. -=+|++||+|++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEeccccC
Confidence 2 4689999999966655551 1122335889999999653111111 12233333 348999999997
No 393
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00054 Score=84.88 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEee-------ee---eEecc--cccccchh-----hccc-----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI-------GA---TYFPA--ENIRERTR-----ELKA----- 850 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~i-------ga---~~~~~--~~i~~~~~-----~i~~----- 850 (1384)
+...|+|.|.+.+||||++++|+...+-.+..+.+|.-. |. ...+. +.+.-.+. .+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 456799999999999999999997665544433333110 00 00000 00000000 0000
Q ss_pred -----c-------cccCCCCEEEEeCCCC---cchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEE
Q 000625 851 -----N-------ATLKVPGLLVIDTPGH---ESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 851 -----~-------~~~~~~~i~~IDTPGH---e~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
. ..+--..|.+||.||. ..++.......-.+|++|||+.+-.-++..-..++..+...+-.++|+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 0 0111125999999994 446666666667789999999987755544444555444443335567
Q ss_pred Eeecccc
Q 000625 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
.||.|..
T Consensus 268 nnkwDas 274 (749)
T KOG0448|consen 268 NNKWDAS 274 (749)
T ss_pred echhhhh
Confidence 7777975
No 394
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.53 E-value=0.00055 Score=73.56 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccc
Q 000625 855 KVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 855 ~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
..+.|.|||||+.... .....+..+|.+|+|+.........+...+.++...++|+.+++|++|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 3567999999976433 33455788999999999887655667778888888899999999999963
No 395
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.52 E-value=0.00083 Score=79.99 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+-|+.+|.|..|+||||||++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4589999999999999999999853
No 396
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.52 E-value=0.00018 Score=85.72 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcc-cccccCc--eeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc---
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGG--ITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE--- 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gG--ITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe--- 868 (1384)
..|+|+|.+++|||||+++|++..+ .....+. |...+|...++.......+.... ........+.|+|.||..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~-~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIK-PEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhC-CcCcCCceEEEEeccccccch
Confidence 3489999999999999999998876 4444343 44556666555432211111111 111222358999999942
Q ss_pred ----chhHHHHhcccccceeEEEeeccC
Q 000625 869 ----SFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 869 ----~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.+.+.....++.||++++||++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 255566667889999999999853
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0004 Score=89.17 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc-cccc--cCce---eEeeeeeE----------ecccccccchhhccc-ccccCC
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV-QEGE--AGGI---TQQIGATY----------FPAENIRERTRELKA-NATLKV 856 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge--~gGI---Tq~iga~~----------~~~~~i~~~~~~i~~-~~~~~~ 856 (1384)
.-||+|||+.|+||||++..|..... ..+. ..-| |..+|+.. +++..... ...+.. -..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~-~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD-AADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC-HHHHHHHHHHhcC
Confidence 34899999999999999999975432 1111 0111 12222210 00000000 000000 002334
Q ss_pred CCEEEEeCCCCcchhH-H---HH--hcccccceeEEEeeccCCCCHHHHH-HHHHHHhc-CC-ceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTN-L---RS--RGSGLCDIAILVVDIMHGLEPQTIE-SLNLLKMR-NT-EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~-~---r~--rg~~~aDiaILVVDa~~Gv~~QT~E-~l~llk~~-~v-P~IVaINKiDl~ 922 (1384)
..+.||||||...... + .. ......+-++||+|++.+ .+++. .+...+.. .+ +-=|++||+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 5799999999332211 1 11 112345678999999853 33332 22222221 11 234779999975
No 398
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.46 E-value=0.00034 Score=81.37 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=56.6
Q ss_pred ccccceeEEEeeccCCC-CHHHHH-HHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000625 878 SGLCDIAILVVDIMHGL-EPQTIE-SLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~Gv-~~QT~E-~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
+..+|++|||+|+.... .+..++ ++..+...++|+|||+||+|+... .. .. ..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~------~~---~~----------------~~ 130 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD------EE---EE----------------LE 130 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh------HH---HH----------------HH
Confidence 67799999999998876 544443 445566788999999999999621 00 00 00
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
...+... .++++++||++|.||.+|+..|.
T Consensus 131 ~~~~~~~---------------g~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 131 LVEALAL---------------GYPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred HHHHHhC---------------CCeEEEEECCCCccHHHHHhhhc
Confidence 0001111 25899999999999988877664
No 399
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.44 E-value=0.00043 Score=83.03 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=64.1
Q ss_pred CcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.++|..++......++++|+|||+.+-......+..+++ .+.|+|+|+||+|++..+ .. ...+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~-----~~-~~~~~-------- 113 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKS-----VN-LSKIK-------- 113 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCC-----CC-HHHHH--------
Confidence 567888888888899999999999764432222222222 268999999999997311 10 00000
Q ss_pred HHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHH
Q 000625 947 EFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQ 1001 (1384)
Q Consensus 947 ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~ 1001 (1384)
.-+...+...|+. ...++++||++|.||.+|+..|..
T Consensus 114 ------~~l~~~~k~~g~~------------~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 114 ------EWMKKRAKELGLK------------PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ------HHHHHHHHHcCCC------------cCcEEEecCCCCCCHHHHHHHHHH
Confidence 0111123333331 125889999999999999988754
No 400
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.44 E-value=0.00032 Score=75.92 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=39.9
Q ss_pred CEEEEeCCCCcc-h-----hHHHHhccccc---ceeEEEeeccCCC-----CHHHHHHHHHHHhcCCceEEEEeeccccc
Q 000625 858 GLLVIDTPGHES-F-----TNLRSRGSGLC---DIAILVVDIMHGL-----EPQTIESLNLLKMRNTEFIVALNKVDRLY 923 (1384)
Q Consensus 858 ~i~~IDTPGHe~-F-----~~~r~rg~~~a---DiaILVVDa~~Gv-----~~QT~E~l~llk~~~vP~IVaINKiDl~~ 923 (1384)
.++|+|+||+-. | .....+.+.+- =++|+++|+.--+ -......+..+..+.+|.|=+++|||++.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 599999999432 2 22223333331 2466777764321 12233444555567899999999999984
No 401
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.43 E-value=0.0004 Score=66.89 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=61.4
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|.|+.|..|++ +.+ ..++|.||+.++.++.+|..|+.|+|.|.+.+. ..+
T Consensus 11 ~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~--------~~v 79 (91)
T cd03693 11 DVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSK--------KDI 79 (91)
T ss_pred EEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCH--------HHc
Confidence 3665 334567777999999999999987 555 579999999999999999999999999987542 357
Q ss_pred cCCCeEEE
Q 000625 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..||+|.+
T Consensus 80 ~~G~vl~~ 87 (91)
T cd03693 80 KRGDVAGD 87 (91)
T ss_pred CCcCEEcc
Confidence 78887754
No 402
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00015 Score=86.40 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++|+|++|+|||||||+|++..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhcccc
Confidence 3468999999999999999998653
No 403
>PRK12289 GTPase RsgA; Reviewed
Probab=97.42 E-value=0.00017 Score=85.95 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
+...+++|+|++|+|||||||+|+...
T Consensus 170 L~~ki~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 170 LRNKITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred hccceEEEEeCCCCCHHHHHHHHcCcc
Confidence 344568999999999999999998643
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.42 E-value=0.00057 Score=81.48 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCcc---cccccCceeEe---eeeeEecccccccchhhccc--------------ccc
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTNV---QEGEAGGITQQ---IGATYFPAENIRERTRELKA--------------NAT 853 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v---~~ge~gGITq~---iga~~~~~~~i~~~~~~i~~--------------~~~ 853 (1384)
..+|++||++|+||||.|-.|....+ .....+=||.+ ||+.. .+...+.-+.. -..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E----QLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE----QLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH----HHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 56799999999999999998863322 11112223332 23210 00000000000 112
Q ss_pred cCCCCEEEEeCCCCcchhHHH----Hhccc--ccceeEEEeeccCCCCHHHH-HHHHHHHhcCCceEEEEeecccc
Q 000625 854 LKVPGLLVIDTPGHESFTNLR----SRGSG--LCDIAILVVDIMHGLEPQTI-ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 854 ~~~~~i~~IDTPGHe~F~~~r----~rg~~--~aDiaILVVDa~~Gv~~QT~-E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
+....+.||||.|+..+..+. ...+. ...-+.||++++. ...+. +.+......++- =+++||+|-.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 445689999999976543222 12222 2345668888764 22222 233333333322 3568999975
No 405
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.41 E-value=0.00052 Score=65.55 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=58.8
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccce
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGIK 1093 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv~ 1093 (1384)
|+++|.++|.+.|.|+++.|+|.+|+|+.||.|.+++...... ..|+++++++..+..| ..+.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~--------------~~V~si~~~~~~~~~a~~G~~v~ 66 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLK--------------TTVTGIEMFRKTLDEAEAGDNVG 66 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCce--------------EEEEEEEECCcCCCEECCCCEEE
Confidence 5678999999999999999999999999999998876432222 3345555666666544 3477
Q ss_pred eeccccccccCCCceEEeC
Q 000625 1094 ITAQGLEHAIAGTGLYVVG 1112 (1384)
Q Consensus 1094 i~~~gL~~~~aG~~l~v~~ 1112 (1384)
+.+.+++......+++++.
T Consensus 67 l~l~~~~~~~v~rG~vl~~ 85 (87)
T cd03697 67 VLLRGVKREDVERGMVLAK 85 (87)
T ss_pred EEECCCCHHHcCCccEEec
Confidence 7778876544555565554
No 406
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.00039 Score=76.23 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
.|.+||..|+|||+|=..+....++ +....|-|+++-...+.+- .+--|++||+.|++.|....
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl---------------Gnl~LnlwDcGgqe~fmen~ 70 (295)
T KOG3886|consen 6 KVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL---------------GNLVLNLWDCGGQEEFMENY 70 (295)
T ss_pred eEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh---------------hhheeehhccCCcHHHHHHH
Confidence 4899999999999987766533222 1222333444332222110 11238899999999886543
Q ss_pred H-----hcccccceeEEEeeccCCCCHHHHH----HHHHHHhc--CCceEEEEeeccccc
Q 000625 875 S-----RGSGLCDIAILVVDIMHGLEPQTIE----SLNLLKMR--NTEFIVALNKVDRLY 923 (1384)
Q Consensus 875 ~-----rg~~~aDiaILVVDa~~Gv~~QT~E----~l~llk~~--~vP~IVaINKiDl~~ 923 (1384)
. .-++..+++|+|+|+...-..-.+. .|..+... ...+++.+.|||++.
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 3 4577889999999997643333333 34444433 246888999999973
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00035 Score=82.59 Aligned_cols=57 Identities=26% Similarity=0.439 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
.+...|.|+|-+++|||||+|+|++... ..+..+|+|.++....+. .++.|+||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-------------------~~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-------------------DGIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-------------------CCeEEecCCCc
Confidence 3445599999999999999999997664 566778888776433322 35899999993
No 408
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.34 E-value=0.00073 Score=64.58 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=56.7
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC-Cc-eeEEeeeccCCCCCccceeceeeechhhhcc---ccc
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ-GP-IVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQG 1091 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~-g~-~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a---a~g 1091 (1384)
|+++|.++|.+.|.|++++|+|.+|+|++||.+.+++.. +. ....| +++++++..+.. +..
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V--------------~sI~~~~~~~~~a~aGd~ 66 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTV--------------KSIHRNRSPVRVVRAGQS 66 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEE--------------EEEEECCeECCEECCCCE
Confidence 467899999999999999999999999999999988763 21 33444 445555555543 344
Q ss_pred ceeeccccccccCCCceEEe
Q 000625 1092 IKITAQGLEHAIAGTGLYVV 1111 (1384)
Q Consensus 1092 v~i~~~gL~~~~aG~~l~v~ 1111 (1384)
+.+.+++++......+++++
T Consensus 67 v~l~l~~i~~~~i~~G~vl~ 86 (87)
T cd03694 67 ASLALKKIDRSLLRKGMVLV 86 (87)
T ss_pred EEEEEcCCCHHHcCCccEEe
Confidence 67777777654444455443
No 409
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.29 E-value=0.00092 Score=63.26 Aligned_cols=78 Identities=13% Similarity=0.316 Sum_probs=54.2
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccc---ccc
Q 000625 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAA---QGI 1092 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa---~gv 1092 (1384)
||+++|..+|.+. .|++++|.|.+|+|++||.|.+++++ ....|+ ++++++..+..| ..+
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~--~~~~V~--------------si~~~~~~~~~a~aGd~v 63 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK--ESVEVK--------------SIYVDDEEVDYAVAGENV 63 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC--cEEEEE--------------EEEECCeECCEECCCCEE
Confidence 4788999999988 99999999999999999999988764 233444 445555444433 336
Q ss_pred eeeccccccccCCCceEE
Q 000625 1093 KITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1384)
.+.+.+++......+.++
T Consensus 64 ~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 64 RLKLKGIDEEDISPGDVL 81 (83)
T ss_pred EEEECCCCHHHCCCCCEE
Confidence 666777654333334333
No 410
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.29 E-value=0.0025 Score=76.58 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=44.2
Q ss_pred CCEEEEeCCCCc-------------chhHHHHhcccccceeEEEeeccCCC-C---HHHHHHHHHHHhcCCceEEEEeec
Q 000625 857 PGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGL-E---PQTIESLNLLKMRNTEFIVALNKV 919 (1384)
Q Consensus 857 ~~i~~IDTPGHe-------------~F~~~r~rg~~~aDiaILVVDa~~Gv-~---~QT~E~l~llk~~~vP~IVaINKi 919 (1384)
+.+.++|.||.. +...|...++..++.+||||- +|. . ...-.....+--+|...|+|++|+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 458999999942 234556677888999999983 222 1 112223345556788899999999
Q ss_pred ccc
Q 000625 920 DRL 922 (1384)
Q Consensus 920 Dl~ 922 (1384)
|+.
T Consensus 490 DlA 492 (980)
T KOG0447|consen 490 DLA 492 (980)
T ss_pred chh
Confidence 986
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00028 Score=81.31 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.0
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
...+..-+.+++|++|+|||||+|+|..
T Consensus 159 ~~~l~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 159 AELLAGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHhhCc
Confidence 3456666899999999999999999985
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.26 E-value=0.0014 Score=68.08 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=64.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
++.+-|..|+||||+.-.|...-... |.+.- .+..+... . .+. ..+.|||||++... ...
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~----~~~~~----~vd~D~~~---~------~~~-yd~VIiD~p~~~~~--~~~ 61 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKL----GKRVL----LLDADLGL---A------NLD-YDYIIIDTGAGISD--NVL 61 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEE----EEECCCCC---C------CCC-CCEEEEECCCCCCH--HHH
Confidence 34556688999999988776432211 11111 11111000 0 000 46999999986443 334
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCceEEEEeeccc
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEFIVALNKVDR 921 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~IVaINKiDl 921 (1384)
..+..||.+|+|++.+..-...+...+..+... ..++.+++|+++.
T Consensus 62 ~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 62 DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 568889999999998754444556666666433 3578899999985
No 413
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.25 E-value=0.00061 Score=71.58 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCccc-ccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQ-EGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~-~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..|+++|.+++|||||+++|++.... .+...|.|.++....+ ...+.||||||.
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~DtpGi 156 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-------------------TSKIYLLDTPGV 156 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-------------------CCCEEEEECcCC
Confidence 45899999999999999999865432 2334444433221111 125899999994
No 414
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.23 E-value=0.00061 Score=78.64 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc-cchhhcccccccCCCCEEEEeCCCC----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR-ERTRELKANATLKVPGLLVIDTPGH---- 867 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~-~~~~~i~~~~~~~~~~i~~IDTPGH---- 867 (1384)
.++.++|+|.+++|||||+++|+......+..+-.|++.....++....+ ..+..+......-.-.|+|+|+.|.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 34569999999999999999999988877777777766544433332211 1111111110001124999999993
Q ss_pred ---cchhHHHHhcccccceeEEEeeccC
Q 000625 868 ---ESFTNLRSRGSGLCDIAILVVDIMH 892 (1384)
Q Consensus 868 ---e~F~~~r~rg~~~aDiaILVVDa~~ 892 (1384)
.-..|-....++.||.++-||++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2244555566788999999998854
No 415
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.22 E-value=0.00041 Score=78.88 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+...+++|+|++|+|||||+++|++.
T Consensus 118 l~~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 118 LQNRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhhh
Confidence 34457999999999999999999864
No 416
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.22 E-value=0.001 Score=70.90 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=47.6
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCc-eEEEEeecccc
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRL 922 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP-~IVaINKiDl~ 922 (1384)
.+.||||||...+. ....+..||.+|+|++....-...+...+..+...+.+ +.|++|+++..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 69999999865543 34557889999999998776666666677777766654 56899999853
No 417
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.17 E-value=0.00077 Score=79.51 Aligned_cols=124 Identities=22% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEee--------eeeEecccccccchhhcccc-------
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQI--------GATYFPAENIRERTRELKAN------- 851 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~i--------ga~~~~~~~i~~~~~~i~~~------- 851 (1384)
+-|+.+|.|..|+||||||++|+... |...+.|.+..+- ....+...++. .++..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiC---Cs~~~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCIC---CSRSNELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEE---EccCchHHHHHHH
Confidence 45899999999999999999998531 1122222221110 00111111110 011000
Q ss_pred c--cc----CCCCEEEEeCCCCcchhHHHHhc--------ccccceeEEEeeccCCCCHHH--HHHHHHHHhcCCceEEE
Q 000625 852 A--TL----KVPGLLVIDTPGHESFTNLRSRG--------SGLCDIAILVVDIMHGLEPQT--IESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 852 ~--~~----~~~~i~~IDTPGHe~F~~~r~rg--------~~~aDiaILVVDa~~Gv~~QT--~E~l~llk~~~vP~IVa 915 (1384)
. .+ ..+...||.|.|..+-..+.... .-..+.+|.|||+.+...... .....++... =+|+
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~Iv 156 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRIL 156 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEE
Confidence 0 00 13678999999977544333221 123588999999987532111 1122333333 4899
Q ss_pred Eeecccc
Q 000625 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
+||+|++
T Consensus 157 lnK~Dl~ 163 (318)
T PRK11537 157 LTKTDVA 163 (318)
T ss_pred EeccccC
Confidence 9999997
No 418
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.12 E-value=0.0019 Score=58.75 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCeEEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEE
Q 000625 1268 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1347 (1384)
Q Consensus 1268 ~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~ 1347 (1384)
..+.|+.|+|.+|+|++|..|.+......+.++|.+|.+.+..+..+..|+.|+|.+...+ ++..||.|.
T Consensus 13 ~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~----------~~~~g~~l~ 82 (83)
T cd01342 13 GRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD----------DIKIGDTLT 82 (83)
T ss_pred CceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc----------ccCCCCEec
Confidence 4578999999999999999999854233567899999999999999999999999986431 577777763
No 419
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.10 E-value=0.00085 Score=76.92 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=41.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG 866 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG 866 (1384)
+.|.|+|-+++|||||+++++... ...|..+|+|+.++..+.-.+ .+.+.+|||||
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~----------------rp~vy~iDTPG 205 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH----------------RPPVYLIDTPG 205 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc----------------CCceEEecCCC
Confidence 569999999999999999997432 345667888888765332211 24599999999
No 420
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.0013 Score=78.74 Aligned_cols=123 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCccc-----------cccc------CceeEeeeeeEecccccccchhhc-cc---c
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQ-----------EGEA------GGITQQIGATYFPAENIRERTREL-KA---N 851 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~-----------~ge~------gGITq~iga~~~~~~~i~~~~~~i-~~---~ 851 (1384)
++-+|.++|--|+||||.+..|...-.. .++. ..+..+++..+|+...... ...+ .. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~-Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD-PVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC-HHHHHHHHHHH
Confidence 3457889999999999999887532110 1111 1123456666665421110 0111 00 1
Q ss_pred cccCCCCEEEEeCCCCcch----hH-H-HHhcccccceeEEEeeccCCCCHHHHHHHHHHHhc--CCce-EEEEeeccc
Q 000625 852 ATLKVPGLLVIDTPGHESF----TN-L-RSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F----~~-~-r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~--~vP~-IVaINKiDl 921 (1384)
+......+.||||.|.... .. + .......+|=+|||||++-|-. ..+.++.+ .+++ =|+|||+|-
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd-----A~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD-----AVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH-----HHHHHHHHhhhcCCceEEEEcccC
Confidence 1122357999999993332 11 1 1244556899999999998732 22233322 2454 378999995
No 421
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.06 E-value=0.0008 Score=78.31 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.7
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.+++.+++|+|++|+|||||++.|++..
T Consensus 158 ~L~~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 158 YLKGKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred hhccceEEEECCCCCCHHHHHHHHhchh
Confidence 3455679999999999999999998754
No 422
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.00 E-value=0.0027 Score=59.93 Aligned_cols=77 Identities=14% Similarity=0.310 Sum_probs=51.9
Q ss_pred ccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcc---cccc
Q 000625 1016 ELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGI 1092 (1384)
Q Consensus 1016 ~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~a---a~gv 1092 (1384)
||+++|.++|.. .|+++.|+|.+|+|++||.|.+++++ ....|+ ++++++..+.. +..+
T Consensus 1 plr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~--~~~~V~--------------si~~~~~~~~~a~aGd~v 62 (82)
T cd04089 1 PLRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNK--TQVEVL--------------SIYNEDVEVRYARPGENV 62 (82)
T ss_pred CeEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCC--cEEEEE--------------EEEECCEECCEECCCCEE
Confidence 478899998865 38999999999999999999988764 233444 44455444443 3446
Q ss_pred eeeccccccccCCCceEE
Q 000625 1093 KITAQGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1093 ~i~~~gL~~~~aG~~l~v 1110 (1384)
.+.+.+++......+.++
T Consensus 63 ~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 63 RLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEecCCCHHHCCCCCEE
Confidence 677777655433344443
No 423
>PRK00098 GTPase RsgA; Reviewed
Probab=96.98 E-value=0.001 Score=77.94 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
++..+++|+|++|+|||||+++|++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 455679999999999999999998653
No 424
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0031 Score=69.60 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhH--
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTN-- 872 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~-- 872 (1384)
|.|.+|||--+||||+-....+..-+ .+ |.-+-.+ ..+ +.. ......-.+.+||.||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP-ne----TlflEST----ski---~~d---~is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP-NE----TLFLEST----SKI---TRD---HISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC-Cc----eeEeecc----Ccc---cHh---hhhhhhcceEEeecCCccccCCCc
Confidence 45999999999999987665443211 11 1100000 000 000 0000112488999999877632
Q ss_pred -HHHhcccccceeEEEeeccCCC-CHHHHHHHHHHHhcC----CceEEEEeecccc
Q 000625 873 -LRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLKMRN----TEFIVALNKVDRL 922 (1384)
Q Consensus 873 -~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk~~~----vP~IVaINKiDl~ 922 (1384)
-..+-++.|-..|+|||+.+.. .+-|.-++...+.++ +.|=|+|.|+|-+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 2234467788999999997643 355566666666654 5688999999976
No 425
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.97 E-value=0.0024 Score=76.21 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC-----------CCHHHHHHHHHHHh----cCCceEEEEeecc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----------LEPQTIESLNLLKM----RNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----------v~~QT~E~l~llk~----~~vP~IVaINKiD 920 (1384)
...+.|||++|+..+...|..++..++++|+|||+++- -...++..+..+.. .++|+||++||+|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 34589999999999999999999999999999999862 22344444444433 4689999999999
Q ss_pred cccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHH
Q 000625 921 RLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLV 1000 (1384)
Q Consensus 921 l~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~ 1000 (1384)
+... .....++...+...... ..+.....-|...|....-+ ..+..+.++.|+|..-.+|..+++.+.
T Consensus 263 ~~~~--Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~--------~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 263 LFEE--KIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRN--------SSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred hHHH--HhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccC--------CCCceEEEEEeeecccHHHHHHHHHHH
Confidence 7421 00001111100000000 01112222333333322110 023457788899999998888887765
Q ss_pred HHH
Q 000625 1001 QWT 1003 (1384)
Q Consensus 1001 ~~~ 1003 (1384)
..+
T Consensus 331 ~~I 333 (342)
T smart00275 331 DII 333 (342)
T ss_pred HHH
Confidence 443
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.94 E-value=0.0021 Score=71.27 Aligned_cols=62 Identities=27% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCEEEEeCC-CCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcC-CceEEEEeeccc
Q 000625 857 PGLLVIDTP-GHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRN-TEFIVALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTP-GHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~-vP~IVaINKiDl 921 (1384)
..+.|+||= |.+.|.. +-...+|++|+|||.+.--.......-.+....+ .++.|++||+|-
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 568999995 7777763 3346799999999987533333334445666788 789999999995
No 427
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.93 E-value=0.0035 Score=59.26 Aligned_cols=68 Identities=21% Similarity=0.430 Sum_probs=50.0
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc---ccccce
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK---AAQGIK 1093 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~---aa~gv~ 1093 (1384)
|+++|.++|.+.|.|+++.|.|.+|+|++|+.|.+.+++ ..+.|+ ++++++..+. ++..+.
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~--~~~~V~--------------sI~~~~~~~~~a~aGd~v~ 64 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG--EETRVR--------------SIQVHGKDVEEAKAGDRVA 64 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC--ceEEEE--------------EEEECCcCcCEEcCCCEEE
Confidence 578899999999999999999999999999999987653 334444 4445555444 333466
Q ss_pred eeccccc
Q 000625 1094 ITAQGLE 1100 (1384)
Q Consensus 1094 i~~~gL~ 1100 (1384)
+.+.++.
T Consensus 65 i~l~~~~ 71 (83)
T cd03696 65 LNLTGVD 71 (83)
T ss_pred EEEcCCC
Confidence 6666654
No 428
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.93 E-value=0.0024 Score=61.11 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=59.7
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEee-cCC-ceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICI-PQR-DFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~-~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
+|+ +..+.|+.-+|..|.|++|..+.+ +.+ ..-+..+|.||+.++..+.+|..|+.|+|.|.+.+. .++
T Consensus 8 vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i 79 (87)
T cd03694 8 IYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDR--------SLL 79 (87)
T ss_pred EEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCH--------HHc
Confidence 564 345667777999999999999987 442 112478999999999999999999999999987643 256
Q ss_pred cCCCeEE
Q 000625 1341 DIEDELV 1347 (1384)
Q Consensus 1341 ~~~d~l~ 1347 (1384)
..|++|.
T Consensus 80 ~~G~vl~ 86 (87)
T cd03694 80 RKGMVLV 86 (87)
T ss_pred CCccEEe
Confidence 6677774
No 429
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=96.92 E-value=0.0031 Score=59.65 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=58.3
Q ss_pred cccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccC
Q 000625 1264 VFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDI 1342 (1384)
Q Consensus 1264 vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~ 1342 (1384)
+|+...+.|+.-+|..|+|++|..|.+ +.+ ...+|.||+.++.++++|..|+.|+|.|.+.+. ..+..
T Consensus 9 v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~--------~~v~~ 77 (83)
T cd03698 9 KYKDQGGTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDE--------EDISP 77 (83)
T ss_pred EEEcCCCcEEEEEEeeeEEeCCCEEEEeCCC---cEEEEEEEEECCeECCEECCCCEEEEEECCCCH--------HHCCC
Confidence 554225567777999999999999987 555 358999999999999999999999999987542 24667
Q ss_pred CCeEE
Q 000625 1343 EDELV 1347 (1384)
Q Consensus 1343 ~d~l~ 1347 (1384)
||+|.
T Consensus 78 G~vl~ 82 (83)
T cd03698 78 GDVLC 82 (83)
T ss_pred CCEEe
Confidence 78774
No 430
>PRK13796 GTPase YqeH; Provisional
Probab=96.90 E-value=0.0011 Score=79.76 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc------ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~------v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe 868 (1384)
..|.|+|.+|+|||||+|+|+... +..+..+|+|.++- .++.. .+..|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~-----------------~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLD-----------------DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcC-----------------CCcEEEECCCcc
Confidence 359999999999999999998542 12334455554432 12211 246899999963
No 431
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=96.90 E-value=0.0035 Score=59.21 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=58.4
Q ss_pred ccccCCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000625 1263 CVFNKKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1263 ~vf~~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
.+|+.. +.|+.-+|..|.|++|..|.+ +.+ ...+|.||+.++..+.+|..|+-|+|.|.+.+. .++.
T Consensus 8 ~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~---~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~--------~~v~ 75 (82)
T cd04089 8 DKYKDM-GTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEE--------EDIS 75 (82)
T ss_pred eEEEcC-CEEEEEEEeeeEEecCCEEEEeCCC---cEEEEEEEEECCEECCEECCCCEEEEEecCCCH--------HHCC
Confidence 356533 556666999999999999987 555 358899999999999999999999999987542 2567
Q ss_pred CCCeEE
Q 000625 1342 IEDELV 1347 (1384)
Q Consensus 1342 ~~d~l~ 1347 (1384)
.||+|.
T Consensus 76 ~G~vl~ 81 (82)
T cd04089 76 PGFVLC 81 (82)
T ss_pred CCCEEe
Confidence 788774
No 432
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.003 Score=70.85 Aligned_cols=118 Identities=17% Similarity=0.259 Sum_probs=67.3
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccC----ceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCC
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAG----GITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTP 865 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~g----GITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTP 865 (1384)
..--+.+|.-+|..|.|||||++.|.++++...... ++..+...+.+.-.+++ -.|+|+||-
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr--------------lKLtiv~tv 103 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR--------------LKLTIVDTV 103 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCee--------------EEEEEEeec
Confidence 344455688889999999999999999987654322 22111111111111111 249999999
Q ss_pred CCcc------------------hhHH-----------HHhcccccceeEEEeecc-CCCCHHHHHHHHHHHhcCCceEEE
Q 000625 866 GHES------------------FTNL-----------RSRGSGLCDIAILVVDIM-HGLEPQTIESLNLLKMRNTEFIVA 915 (1384)
Q Consensus 866 GHe~------------------F~~~-----------r~rg~~~aDiaILVVDa~-~Gv~~QT~E~l~llk~~~vP~IVa 915 (1384)
|+-+ |.+. ....-+..+++++.|..+ ||+....+-.+..|. .++.+|.+
T Consensus 104 GfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPv 182 (406)
T KOG3859|consen 104 GFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPV 182 (406)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHH
Confidence 9532 1111 111123356788888764 454443333333332 24678888
Q ss_pred Eeecccc
Q 000625 916 LNKVDRL 922 (1384)
Q Consensus 916 INKiDl~ 922 (1384)
|-|.|.+
T Consensus 183 IAKaDti 189 (406)
T KOG3859|consen 183 IAKADTI 189 (406)
T ss_pred HHHhhhh
Confidence 8899976
No 433
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.88 E-value=0.00066 Score=81.96 Aligned_cols=59 Identities=22% Similarity=0.463 Sum_probs=47.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc-ccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCC--Ccchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN-VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG--HESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~-v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG--He~F~ 871 (1384)
.+|++||.+++||||+||+|.+.. |....++|-|.|+.++++. +.+.|.|||| +.+|+
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------------------~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------------------PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------------------CCceecCCCCccccCCC
Confidence 569999999999999999999865 5567788889888766654 4589999999 44555
Q ss_pred H
Q 000625 872 N 872 (1384)
Q Consensus 872 ~ 872 (1384)
.
T Consensus 376 ~ 376 (562)
T KOG1424|consen 376 P 376 (562)
T ss_pred c
Confidence 4
No 434
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.87 E-value=0.0023 Score=63.55 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=50.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRS 875 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~ 875 (1384)
.|+++|+.|+|||+|+.++....+... ..+ ..+| |.....
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~--~~~-~t~~-------------------------------------~~~~~~ 41 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYV--PTV-FTIG-------------------------------------IDVYDP 41 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcccc--Cce-ehhh-------------------------------------hhhccc
Confidence 489999999999999999964433211 000 0111 233334
Q ss_pred hcccccceeEEEeeccCCCCHHHHHHHHHHH---hcCCceEEEEeecccc
Q 000625 876 RGSGLCDIAILVVDIMHGLEPQTIESLNLLK---MRNTEFIVALNKVDRL 922 (1384)
Q Consensus 876 rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk---~~~vP~IVaINKiDl~ 922 (1384)
...+.++.+++|.+....-..... ++..+. ...+|++++.||+|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~-~~~~i~~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK-NVPEVLVGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH-hHHHHHhcCCCCCcEEEEeechhhH
Confidence 455667888887776552211111 122222 2347889999999974
No 435
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.83 E-value=0.0045 Score=66.06 Aligned_cols=67 Identities=21% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCceE-EEEeecccc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFI-VALNKVDRL 922 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~I-VaINKiDl~ 922 (1384)
...+.|||||+...-.......+..+|.+|+|+.....-...+...+..+...+++++ +++|+++..
T Consensus 67 ~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 67 ELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 4579999999874322121111367899999998877666778888999999998865 789999864
No 436
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.0069 Score=81.08 Aligned_cols=117 Identities=22% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcCcccccccCcee--EeeeeeEecccccccchhhcccccccCCCCEEEEeCCC----
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGIT--QQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPG---- 866 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGIT--q~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPG---- 866 (1384)
.-|=-+|||++|+||||+|...- -++...+..+-. ..+|+.++ + .|-...-.+|||.|
T Consensus 124 eLPWy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~c--------------d-wwf~deaVlIDtaGry~~ 187 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNC--------------D-WWFTDEAVLIDTAGRYIT 187 (1188)
T ss_pred cCCceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCccc--------------C-cccccceEEEcCCcceec
Confidence 34557899999999999986532 122211111100 01111111 1 12223578999999
Q ss_pred C--cc---------hhHH--HHhcccccceeEEEeeccCCC--CHHHH-HHHHHHH----------hcCCceEEEEeecc
Q 000625 867 H--ES---------FTNL--RSRGSGLCDIAILVVDIMHGL--EPQTI-ESLNLLK----------MRNTEFIVALNKVD 920 (1384)
Q Consensus 867 H--e~---------F~~~--r~rg~~~aDiaILVVDa~~Gv--~~QT~-E~l~llk----------~~~vP~IVaINKiD 920 (1384)
| .+ |..+ ..|...-.|+|||.+|+.+-. .++-+ .+.+.|+ ...+|+.|++||+|
T Consensus 188 q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~D 267 (1188)
T COG3523 188 QDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKAD 267 (1188)
T ss_pred ccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccc
Confidence 3 22 2222 335567789999999997733 23333 2222222 23579999999999
Q ss_pred cccCc
Q 000625 921 RLYGW 925 (1384)
Q Consensus 921 l~~~w 925 (1384)
++++|
T Consensus 268 ll~GF 272 (1188)
T COG3523 268 LLPGF 272 (1188)
T ss_pred ccccH
Confidence 99763
No 437
>PRK13796 GTPase YqeH; Provisional
Probab=96.73 E-value=0.0058 Score=73.61 Aligned_cols=99 Identities=27% Similarity=0.373 Sum_probs=57.7
Q ss_pred cchhHHHHhcccccc-eeEEEeeccCCCCHHHHHHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHH
Q 000625 868 ESFTNLRSRGSGLCD-IAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQN 946 (1384)
Q Consensus 868 e~F~~~r~rg~~~aD-iaILVVDa~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ 946 (1384)
.+|...+ ..+...| ++++|||+.+-... ....|..+. .+.|+|+|+||+|++.. ... ..
T Consensus 57 ~~~~~~l-~~i~~~~~lIv~VVD~~D~~~s-~~~~L~~~~-~~kpviLViNK~DLl~~-----~~~-~~----------- 116 (365)
T PRK13796 57 DDFLKLL-NGIGDSDALVVNVVDIFDFNGS-WIPGLHRFV-GNNPVLLVGNKADLLPK-----SVK-KN----------- 116 (365)
T ss_pred HHHHHHH-HhhcccCcEEEEEEECccCCCc-hhHHHHHHh-CCCCEEEEEEchhhCCC-----ccC-HH-----------
Confidence 3566644 4445455 99999999874322 222222222 26899999999999631 100 00
Q ss_pred HHHHHHHH-HHHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHH
Q 000625 947 EFNMRLVQ-IVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQW 1002 (1384)
Q Consensus 947 ef~~~i~~-I~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~ 1002 (1384)
.+.. +...+...|+. ...++++||++|.||.+|+..|..+
T Consensus 117 ----~i~~~l~~~~k~~g~~------------~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 117 ----KVKNWLRQEAKELGLR------------PVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ----HHHHHHHHHHHhcCCC------------cCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011 11112223321 1268999999999999999888653
No 438
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.68 E-value=0.0068 Score=57.23 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=34.7
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCC
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQ 1055 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~ 1055 (1384)
|+++|.++|...+.|+.++|.|.+|.|++||.|.+++.+
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~ 39 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG 39 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC
Confidence 578999999888888889999999999999999988654
No 439
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.016 Score=72.14 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=5.7
Q ss_pred eeeeEEeecCcc
Q 000625 1165 KIPVSGISIGPV 1176 (1384)
Q Consensus 1165 ~i~i~~~~vG~v 1176 (1384)
.+|+...|-|..
T Consensus 958 ~r~~~q~gs~Tp 969 (1118)
T KOG1029|consen 958 VRPKDQEGSGTP 969 (1118)
T ss_pred eeehhccCCCCC
Confidence 344445555544
No 440
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.65 E-value=0.0033 Score=60.08 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=57.8
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+-.+|..|+|+.|..|++. .+. -...+|.||+.+++++.+|..|+.|+|.|.+.+. ..+
T Consensus 7 ~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~--------~~v 77 (87)
T cd03697 7 DVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKR--------EDV 77 (87)
T ss_pred EEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCH--------HHc
Confidence 3555 3345566669999999999999873 221 2468999999999999999999999999987542 245
Q ss_pred cCCCeEE
Q 000625 1341 DIEDELV 1347 (1384)
Q Consensus 1341 ~~~d~l~ 1347 (1384)
.-|++|.
T Consensus 78 ~rG~vl~ 84 (87)
T cd03697 78 ERGMVLA 84 (87)
T ss_pred CCccEEe
Confidence 6677774
No 441
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.63 E-value=0.0059 Score=60.43 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=43.0
Q ss_pred CEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC----ceEEEEee
Q 000625 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT----EFIVALNK 918 (1384)
Q Consensus 858 ~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v----P~IVaINK 918 (1384)
.+.|||||+..... ....+..||.+|+|++.+..-...+...+.+++..+. .+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 59999999975543 3456788999999998876555666667777666553 56688885
No 442
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.62 E-value=0.0043 Score=68.61 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCEEEEeCCCCcch------hHHHHhcccccce---eEEEeeccCCCCHHHH-----HHHHHHHhcCCceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESF------TNLRSRGSGLCDI---AILVVDIMHGLEPQTI-----ESLNLLKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F------~~~r~rg~~~aDi---aILVVDa~~Gv~~QT~-----E~l~llk~~~vP~IVaINKiDl~ 922 (1384)
.++.|+|+||+..| .+...+.+...|+ +|-+||+.--..|... -++.-+.....|-|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 47999999995442 2222233333343 4455565332233322 22333445678999999999986
Q ss_pred c
Q 000625 923 Y 923 (1384)
Q Consensus 923 ~ 923 (1384)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 4
No 443
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.62 E-value=0.01 Score=56.36 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=55.2
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCce-eEEeeeccCCCCCccceeceeeechhhhcccccceee
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPI-VTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKIT 1095 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~-~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~ 1095 (1384)
|++.|+.+.+.+..|.++.++|++|+|++||.|.++..+... ..+|..|+.+..... ....+ +.+|-.+.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~-------~~v~~--~~aG~I~~ 71 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKR-------VEVEE--AEAGDIVA 71 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCe-------eECcE--ECCCCEEE
Confidence 468899999999999999999999999999999877653211 123333322211111 11122 23566778
Q ss_pred ccccccccCCCce
Q 000625 1096 AQGLEHAIAGTGL 1108 (1384)
Q Consensus 1096 ~~gL~~~~aG~~l 1108 (1384)
+.||..+.+|+++
T Consensus 72 i~gl~~~~~Gdtl 84 (86)
T cd03691 72 IAGIEDITIGDTI 84 (86)
T ss_pred EECCCCCccccee
Confidence 8899888888876
No 444
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.61 E-value=0.005 Score=72.83 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=53.0
Q ss_pred cccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCC--------C---CHHHHHHHHHHHh----cCCceEEEE
Q 000625 852 ATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG--------L---EPQTIESLNLLKM----RNTEFIVAL 916 (1384)
Q Consensus 852 ~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G--------v---~~QT~E~l~llk~----~~vP~IVaI 916 (1384)
+.++...+-++|++|+.+=..-|...+-.++++|+||+.++= . +..++..+..+.. .+++||+++
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 345566799999999988888888999999999999998641 1 2233333333333 368999999
Q ss_pred eecccc
Q 000625 917 NKVDRL 922 (1384)
Q Consensus 917 NKiDl~ 922 (1384)
||+|+.
T Consensus 270 NK~DLF 275 (354)
T KOG0082|consen 270 NKKDLF 275 (354)
T ss_pred ecHHHH
Confidence 999984
No 445
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.59 E-value=0.024 Score=64.68 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=25.8
Q ss_pred cccccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000625 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 787 ~s~~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
.+...-|-|+-.|.|..|+||||||++|+.
T Consensus 50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 50 KSSLGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred ccCCCCccceEEEEecccCChHHHHHHHHc
Confidence 445567888899999999999999999984
No 446
>PRK13695 putative NTPase; Provisional
Probab=96.58 E-value=0.0069 Score=65.02 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=33.1
Q ss_pred hcccccceeEEEee---ccCCCCHHHHHHHHHHHhcCCceEEEEeecc
Q 000625 876 RGSGLCDIAILVVD---IMHGLEPQTIESLNLLKMRNTEFIVALNKVD 920 (1384)
Q Consensus 876 rg~~~aDiaILVVD---a~~Gv~~QT~E~l~llk~~~vP~IVaINKiD 920 (1384)
..+..+++ ||+| ..+...++..+.+..+...+.|+|+++|+..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 33445666 7888 6667778888888888888999999999853
No 447
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.57 E-value=0.0069 Score=57.04 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHH-H
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNL-R 874 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~-r 874 (1384)
+|+|.|..|+||||+...|...-...+. ++ ..+. .+.|+|+||......+ .
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~------~v--~~~~--------------------d~iivD~~~~~~~~~~~~ 52 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGK------RV--LLID--------------------DYVLIDTPPGLGLLVLLC 52 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCC------eE--EEEC--------------------CEEEEeCCCCccchhhhh
Confidence 4788999999999999988643211110 00 0110 3899999987554432 2
Q ss_pred HhcccccceeEEEeeccCCCCHHHHHHH----HHHHhcCCceEEEEe
Q 000625 875 SRGSGLCDIAILVVDIMHGLEPQTIESL----NLLKMRNTEFIVALN 917 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~Gv~~QT~E~l----~llk~~~vP~IVaIN 917 (1384)
...+..+|.+++|++............+ ........++.+++|
T Consensus 53 ~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 53 LLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3456678999999988765443333332 222223456667766
No 448
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=96.50 E-value=0.0087 Score=56.98 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=56.9
Q ss_pred cccceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhccccccee
Q 000625 1015 NELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKI 1094 (1384)
Q Consensus 1015 ~~~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i 1094 (1384)
.||.+.|+.+.+.+..|.++.++|++|+|+.|+.|.+.. + ...+|..|+.+.......+ . .+..|-.+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~--~-~~~~v~~l~~~~g~~~~~v-------~--~~~aGdI~ 69 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR--E-EKIKITELRVFNNGEVVTA-------D--TVTAGDIA 69 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC--C-cEEEeceeEEEeCCCeEEC-------c--EECCCCEE
Confidence 468899999999999999999999999999999986554 1 1123333332222111111 1 13457788
Q ss_pred eccccccccCCCce
Q 000625 1095 TAQGLEHAIAGTGL 1108 (1384)
Q Consensus 1095 ~~~gL~~~~aG~~l 1108 (1384)
++.||..+.+|++|
T Consensus 70 ai~gl~~~~~Gdtl 83 (85)
T cd03690 70 ILTGLKGLRVGDVL 83 (85)
T ss_pred EEECCCCCcCcccc
Confidence 88999988888876
No 449
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.46 E-value=0.008 Score=58.67 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred EEEEEc-CCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHH
Q 000625 796 ICCIMG-HVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLR 874 (1384)
Q Consensus 796 iV~IlG-hvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r 874 (1384)
+|+|+| ..|+||||+.-.|...-... |. . ...+..+. . ..+.|||||+..... .
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~----~~--~--vl~~d~d~--------------~-~d~viiD~p~~~~~~--~ 55 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARR----GK--R--VLLIDLDP--------------Q-YDYIIIDTPPSLGLL--T 55 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhC----CC--c--EEEEeCCC--------------C-CCEEEEeCcCCCCHH--H
Confidence 366777 77999999988876432211 10 1 11111110 0 358999999975433 3
Q ss_pred HhcccccceeEEEeeccCC
Q 000625 875 SRGSGLCDIAILVVDIMHG 893 (1384)
Q Consensus 875 ~rg~~~aDiaILVVDa~~G 893 (1384)
...+..||.+|++++.+..
T Consensus 56 ~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 56 RNALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHHCCEEEEeccCCHH
Confidence 3667789999999987653
No 450
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.0082 Score=70.07 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.-++.+|+|+|-.|+||||.+..|.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHH
Confidence 456778999999999999999998743
No 451
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.028 Score=70.08 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000625 537 ERLRKEEEERKRLEELER 554 (1384)
Q Consensus 537 E~~~~eeEe~~~~eeeer 554 (1384)
-++.|+||++++++++|+
T Consensus 383 iE~qrEEerkkeie~rEa 400 (1118)
T KOG1029|consen 383 IERQREEERKKEIERREA 400 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 452
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.36 E-value=0.0073 Score=65.15 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.5
Q ss_pred ceeEEEeeccCCCCHHHHHHHHH--HHhcCCceEEEEeecccc
Q 000625 882 DIAILVVDIMHGLEPQTIESLNL--LKMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 882 DiaILVVDa~~Gv~~QT~E~l~l--lk~~~vP~IVaINKiDl~ 922 (1384)
|++|+|||+...+.......+.+ +...+.|+|+|+||+|++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 79999999998776665555555 555678999999999997
No 453
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=96.34 E-value=0.0078 Score=55.27 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.4
Q ss_pred ceEEEEEEEeeeecCCCEEEEccCCC---ceeEEeeeccCCCCCccceeceeeechhhhcccccceeecccccc-ccCCC
Q 000625 1031 GTTIDVVLVNGVLHEGDQIVVCGLQG---PIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGT 1106 (1384)
Q Consensus 1031 G~vi~~iV~~G~Lr~GD~Ivv~g~~g---~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~gL~~-~~aG~ 1106 (1384)
|++++++|++|+|+.||.|++++... +...+|+.|+.++......+ ..+..|+.+.+.+++. ...|+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~---------~~~~~G~~~~~~~~~~~i~~Gd 71 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAV---------AGANAGDIVAIIGLNDAIRRGD 71 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEE---------TTEEEEEEEESSSGCSCSSTTE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeC---------CceeeEEEEEEcCCCCCcCcCC
Confidence 78999999999999999999966221 34577777776543211111 1234578888889998 58888
Q ss_pred ce
Q 000625 1107 GL 1108 (1384)
Q Consensus 1107 ~l 1108 (1384)
.|
T Consensus 72 tl 73 (74)
T PF03144_consen 72 TL 73 (74)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 454
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.32 E-value=0.012 Score=55.51 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=52.3
Q ss_pred EEEEEEeeceEecCCCEeecCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccccCCCeEE
Q 000625 1272 VLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELV 1347 (1384)
Q Consensus 1272 IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~ 1347 (1384)
++..+|..|.|++|..|.+.... ...+|.||+.++.++++|..|+-|+|.|.+. .++..||+|.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~--~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~----------~~i~~G~vl~ 80 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG--KTSRVKSIETFDGELDEAGAGESVTLTLEDE----------IDVSRGDVIV 80 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC--CeEEEEEEEECCcEeCEEcCCCEEEEEECCc----------cccCCCCEEe
Confidence 45559999999999999874332 3589999999999999999999999999742 2577788774
No 455
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=96.31 E-value=0.008 Score=55.19 Aligned_cols=70 Identities=23% Similarity=0.131 Sum_probs=57.4
Q ss_pred CeEEEEEEeeceEecCCCEee-c-C-CceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccc-ccCCCe
Q 000625 1270 PIVLGVDVVEGIAKVGTPICI-P-Q-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRH-FDIEDE 1345 (1384)
Q Consensus 1270 ~~IaG~~V~~G~l~~g~~~~v-~-~-~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~-f~~~d~ 1345 (1384)
+.|+.++|.+|+|++|..|.+ + + +.-...++|.+|..++..+.++..|..||+.+...+. .+ +..||+
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~--------~~~i~~Gdt 72 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGL--------NDAIRRGDT 72 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSG--------CSCSSTTEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCC--------CCCcCcCCE
Confidence 368999999999999999998 2 1 1223669999999999999999999999999887542 35 688888
Q ss_pred EE
Q 000625 1346 LV 1347 (1384)
Q Consensus 1346 l~ 1347 (1384)
|+
T Consensus 73 l~ 74 (74)
T PF03144_consen 73 LT 74 (74)
T ss_dssp EE
T ss_pred EC
Confidence 85
No 456
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.27 E-value=0.021 Score=66.22 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=72.9
Q ss_pred ccccceeEEEeeccCC-CCHHHH-HHHHHHHhcCCceEEEEeecccccCcccCCCchHHHHHHHhhHHHHHHHHHHHHHH
Q 000625 878 SGLCDIAILVVDIMHG-LEPQTI-ESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQI 955 (1384)
Q Consensus 878 ~~~aDiaILVVDa~~G-v~~QT~-E~l~llk~~~vP~IVaINKiDl~~~w~~~~~a~~~~~l~~q~~~v~~ef~~~i~~I 955 (1384)
....|-+||||.+.++ +...-+ .+|-++...++..||||||+|++.. .... . ...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~------~~~~---------------~--~~~ 133 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD------EEAA---------------V--KEL 133 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc------hHHH---------------H--HHH
Confidence 3346777888887664 333333 4556667789999999999999731 1110 0 112
Q ss_pred HHHHHHcCCchhhhhcccCCCCceeEEeCCCcCCCChhhHHHHHHHHH----------HHHHHHhhhcccccc-eEEEEE
Q 000625 956 VTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWT----------QKTMVEKLTFRNELQ-CTVLEV 1024 (1384)
Q Consensus 956 ~~~L~~~Gl~~e~~~~~~d~g~~v~iVpvSA~tGeGI~eLl~~L~~~~----------~~~l~e~l~~~~~~~-~~VlEv 1024 (1384)
...+...| ++++.+|+++++|+..|...|...+ -.+|+.+|.+....+ +.|.+
T Consensus 134 ~~~y~~~g---------------y~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~- 197 (301)
T COG1162 134 LREYEDIG---------------YPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTGEISE- 197 (301)
T ss_pred HHHHHhCC---------------eeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc-
Confidence 22222233 5899999999999999888775443 135555555533322 12222
Q ss_pred EEEcCcceEEEEEEE
Q 000625 1025 KVIEGHGTTIDVVLV 1039 (1384)
Q Consensus 1025 k~~~G~G~vi~~iV~ 1039 (1384)
..-.|+.||-...++
T Consensus 198 ~~~rGkHTTt~~~l~ 212 (301)
T COG1162 198 KLGRGRHTTTHVELF 212 (301)
T ss_pred cCCCCCCccceEEEE
Confidence 333566676666554
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.27 E-value=0.002 Score=67.08 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
|+|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 458
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.25 E-value=0.011 Score=66.67 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCCce-EEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~vP~-IVaINKiDl 921 (1384)
...+.|||||+...+. ....+..+|.+|+|++....-...+...+.++...++++ .|++|+++.
T Consensus 108 ~yD~VIiD~p~~~~~~--~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLERD--AVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccCHH--HHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 3579999999865543 334566899999999987554455666666777777775 589999985
No 459
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.22 E-value=0.014 Score=71.88 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCCcchhHHHHh
Q 000625 797 CCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFTNLRSR 876 (1384)
Q Consensus 797 V~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~r 876 (1384)
|.|+|.-++|||.||.++++..+..+..+.++..+....+.... ....+.+-|.+-. ....+...
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g--------------~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG--------------QQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc--------------ccceEEEeecCcc-ccccccCc
Confidence 78999999999999999998776653333222222111111110 0022555555532 22222222
Q ss_pred cccccceeEEEeeccCCCCHHHHHHHHHH-----HhcCCceEEEEeecccc
Q 000625 877 GSGLCDIAILVVDIMHGLEPQTIESLNLL-----KMRNTEFIVALNKVDRL 922 (1384)
Q Consensus 877 g~~~aDiaILVVDa~~Gv~~QT~E~l~ll-----k~~~vP~IVaINKiDl~ 922 (1384)
-..||+++||+|.+... ...++..+ ....+|+++|.+|+|+-
T Consensus 493 -e~~cDv~~~~YDsS~p~---sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 493 -EAACDVACLVYDSSNPR---SFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred -cceeeeEEEecccCCch---HHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 26799999999998533 33332211 12679999999999985
No 460
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.21 E-value=0.028 Score=74.81 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=13.5
Q ss_pred eCCCCCHHHHH-HHHHhCCeEEEcchHHHHH
Q 000625 1200 FDVKVTPEARE-LAEELGVKIFIADIIYHLF 1229 (1384)
Q Consensus 1200 FnVkv~~~a~~-~A~~~gV~I~~~~IIY~L~ 1229 (1384)
||++-...... -|+-.+--.+....||.|-
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1021)
T PTZ00266 978 YNAKKEYHDEEERAELANSYTLQKRNMYALK 1008 (1021)
T ss_pred cchhhhcchhhhhhhccccceeeccchHHHH
Confidence 55554333322 2333334444555566654
No 461
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=96.18 E-value=0.016 Score=54.60 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeecc
Q 000625 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQ 1097 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~~ 1097 (1384)
.+.|+.+.+.+..|.++.++|++|+|++||.|.+++... ..+|..|+.+.+.....+ . .+.+|..+.+.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v-------~--~~~aGdI~~i~ 70 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEV-------E--EAGAGDIGAVA 70 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceEC-------C--EeCCCCEEEEE
Confidence 467888888888999999999999999999998776432 123333332332221111 1 13457778888
Q ss_pred ccccccCCCce
Q 000625 1098 GLEHAIAGTGL 1108 (1384)
Q Consensus 1098 gL~~~~aG~~l 1108 (1384)
|+..+.+|+++
T Consensus 71 g~~~~~~Gdtl 81 (83)
T cd04088 71 GLKDTATGDTL 81 (83)
T ss_pred CCCCCccCCEe
Confidence 99888888876
No 462
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.10 E-value=0.004 Score=62.91 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeeeeeEecccccc---cchhhcccccccCCCCEEEEeCCCCcchh
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIR---ERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~iga~~~~~~~i~---~~~~~i~~~~~~~~~~i~~IDTPGHe~F~ 871 (1384)
-+++|.|.+|+|||+|+.++............ ++...++...... .....+.......... ......+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKN---HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC---CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccC---CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 45899999999999999999864322111000 1222222211111 1111110011111111 11122333
Q ss_pred HHHHhcccccceeEEEeeccCCC-CHHHHHHHHHHH-hcCCceEEEEee
Q 000625 872 NLRSRGSGLCDIAILVVDIMHGL-EPQTIESLNLLK-MRNTEFIVALNK 918 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv-~~QT~E~l~llk-~~~vP~IVaINK 918 (1384)
......+......|||||-.+.+ ...+.+.|..+. ..++++|++.+-
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44455555555689999988777 666666665554 345788887754
No 463
>PHA02518 ParA-like protein; Provisional
Probab=96.10 E-value=0.015 Score=63.90 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCC---HHHHHHHHHHHhc--CCce-EEEEeeccc
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR--NTEF-IVALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~--~vP~-IVaINKiDl 921 (1384)
..+.||||||. +..+....+..+|.+|+++..+.--. .++...+..+... +.|. .|++|+.+.
T Consensus 77 ~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 77 YDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 47999999997 34555667889999999998765322 2333333333222 4554 466676653
No 464
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.0036 Score=73.83 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.|||+|+.|+||||||..|++.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999864
No 465
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.013 Score=70.37 Aligned_cols=132 Identities=21% Similarity=0.214 Sum_probs=71.0
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcccccc-----------cCceeE---------eeeeeEecc-cc-c-ccchhh
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGE-----------AGGITQ---------QIGATYFPA-EN-I-RERTRE 847 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge-----------~gGITq---------~iga~~~~~-~~-i-~~~~~~ 847 (1384)
+-||.+|+|||-.|+||||-|-.|.++-.+..- .|.|-| .++.++++. +. . ..-+..
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 448999999999999999999999765333221 111110 000111110 00 0 000000
Q ss_pred ccc---ccccCCCCEEEEeCCC--CcchhHHHH----hcccccceeEEEeeccCCCC--HHHHHHHHHHHhcCCceE---
Q 000625 848 LKA---NATLKVPGLLVIDTPG--HESFTNLRS----RGSGLCDIAILVVDIMHGLE--PQTIESLNLLKMRNTEFI--- 913 (1384)
Q Consensus 848 i~~---~~~~~~~~i~~IDTPG--He~F~~~r~----rg~~~aDiaILVVDa~~Gv~--~QT~E~l~llk~~~vP~I--- 913 (1384)
... ....+...+.||||.| |.+-.-|+. .-+..+|.+|+|--|--|-. .|...+-..+..+..|..
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~ 534 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDG 534 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccce
Confidence 000 0122345699999999 433222221 12456899999987755532 344444444555555543
Q ss_pred EEEeecccc
Q 000625 914 VALNKVDRL 922 (1384)
Q Consensus 914 VaINKiDl~ 922 (1384)
|+|+|+|.+
T Consensus 535 ~~ltk~dtv 543 (587)
T KOG0781|consen 535 ILLTKFDTV 543 (587)
T ss_pred EEEEeccch
Confidence 689999986
No 466
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.99 E-value=0.0092 Score=67.40 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHH------hcCCceEEEEeecc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK------MRNTEFIVALNKVD 920 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk------~~~vP~IVaINKiD 920 (1384)
.+.+.||||||+.. .+....+..||++|+.+..+.--...+...+..+. ..++|+.|++|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 35799999999865 33455678899999888765432233334443332 23678899999987
No 467
>PRK12736 elongation factor Tu; Reviewed
Probab=95.97 E-value=0.028 Score=68.52 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=63.2
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000625 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|-.+.|.. +|+ ...+.|+..+|..|+|+.|..|.+. .+. -...+|.||+.++.+|++|..|+-|||.|.+.+.
T Consensus 210 p~r~~I~~--~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~-- 284 (394)
T PRK12736 210 PFLMPVED--VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDR-- 284 (394)
T ss_pred CeEEEEEE--EEecCCcEEEEEEEEeecEEecCCEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcH--
Confidence 33444443 665 4567899999999999999999874 222 2357999999999999999999999999987542
Q ss_pred hhccccccccCCCeEEE
Q 000625 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
..+..||+|..
T Consensus 285 ------~~i~~G~vl~~ 295 (394)
T PRK12736 285 ------DEVERGQVLAK 295 (394)
T ss_pred ------HhCCcceEEec
Confidence 24666777743
No 468
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.81 E-value=0.048 Score=49.45 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=39.4
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeecc
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALL 1066 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll 1066 (1384)
+.+.|..++.+.+.|.++.++|.+|+|++|+.+.+++.......+|+.|.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~ 50 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLK 50 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeE
Confidence 35788999999999999999999999999999988764333344555554
No 469
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.011 Score=69.44 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.8
Q ss_pred ccCCCCEEEEEcCCCCCHHHHHHHHHc
Q 000625 790 ENLRSPICCIMGHVDTGKTKLLDCIRG 816 (1384)
Q Consensus 790 ~~~R~piV~IlGhvdsGKTTLLd~L~~ 816 (1384)
..-++-||.++|--|+||||.+..|.+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHH
Confidence 445677899999999999999988863
No 470
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.78 E-value=0.032 Score=52.71 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=53.4
Q ss_pred ceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhc-ccccceeec
Q 000625 1018 QCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITA 1096 (1384)
Q Consensus 1018 ~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~-aa~gv~i~~ 1096 (1384)
.+.|+.+.+.+..|..+.++|++|+|+.||.|.++.... ..+|..|..++.... .++. +.+|..+++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~----------~~v~~~~aGdI~~i 69 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQY----------QEIPSLSAGNIGVI 69 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCc----------eECCeeCCCCEEEE
Confidence 467888888899999999999999999999997665431 122323322211111 1122 335777778
Q ss_pred cccccccCCCceE
Q 000625 1097 QGLEHAIAGTGLY 1109 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~ 1109 (1384)
.||+.+.+|+++.
T Consensus 70 ~gl~~~~~Gdtl~ 82 (83)
T cd04092 70 TGLKQTRTGDTLV 82 (83)
T ss_pred ECCCCcccCCEEe
Confidence 8998888888764
No 471
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.021 Score=66.08 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
.||.|+|.-|+||||||..|...+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 478999999999999999987543
No 472
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.76 E-value=0.043 Score=63.02 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCH---HHHHHHHHH-HhcCCceE-EEEeeccc
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEP---QTIESLNLL-KMRNTEFI-VALNKVDR 921 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~---QT~E~l~ll-k~~~vP~I-VaINKiDl 921 (1384)
+.+.||||||...... +...+..||.+|+++..+.--.. .+...+..+ ...+++++ |++|+++.
T Consensus 116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5799999998643322 22347789999999987542222 333333322 23456644 78999884
No 473
>PLN03126 Elongation factor Tu; Provisional
Probab=95.65 E-value=0.021 Score=71.02 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=61.2
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|+|++|..|.+. .+. -...+|.||+.++.+|.+|..|+.|||.|.+.+. ..+
T Consensus 296 ~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~--------~di 366 (478)
T PLN03126 296 DVFSITGRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQK--------ADI 366 (478)
T ss_pred EEEEeCCceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcH--------HHc
Confidence 3676 4457888889999999999999884 332 2458999999999999999999999999987542 246
Q ss_pred cCCCeEEE
Q 000625 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..|++|..
T Consensus 367 ~rG~VL~~ 374 (478)
T PLN03126 367 QRGMVLAK 374 (478)
T ss_pred CCccEEec
Confidence 66777754
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.63 E-value=0.04 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 792 LRSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
.+.|+|+|+|..|+|||||+.+|...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 57889999999999999999999754
No 475
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.61 E-value=0.087 Score=65.70 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=8.4
Q ss_pred cCCceEEEEeeccc
Q 000625 908 RNTEFIVALNKVDR 921 (1384)
Q Consensus 908 ~~vP~IVaINKiDl 921 (1384)
..-|+++|.-|-|+
T Consensus 1190 ~kpP~lLvAGkDDm 1203 (1259)
T KOG0163|consen 1190 DKPPILLVAGKDDM 1203 (1259)
T ss_pred CCCCeEEEecCchH
Confidence 34566666666664
No 476
>PRK12735 elongation factor Tu; Reviewed
Probab=95.60 E-value=0.05 Score=66.38 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=60.1
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ +..+.|+..+|..|+|++|..|.+. .+. -...+|.||+.++.+|.+|..|+-|||.|.+-+. .++
T Consensus 219 ~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~--------~~i 289 (396)
T PRK12735 219 DVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKE-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKR--------EDV 289 (396)
T ss_pred EEEecCCceEEEEEEEEecEEeCCCEEEEecCCC-CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcH--------HHC
Confidence 3665 4557888889999999999999874 321 2358999999999999999999999999987532 246
Q ss_pred cCCCeEEE
Q 000625 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..|++|..
T Consensus 290 ~rG~vl~~ 297 (396)
T PRK12735 290 ERGQVLAK 297 (396)
T ss_pred CcceEEEc
Confidence 66777644
No 477
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.54 E-value=0.015 Score=74.68 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=82.5
Q ss_pred cccCCCCEEEEEcCCCCCHHHHHHHHHcCcccccccCceeEeee-----------------------eeEecccccc---
Q 000625 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIG-----------------------ATYFPAENIR--- 842 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~ge~gGITq~ig-----------------------a~~~~~~~i~--- 842 (1384)
...+..|.|+|+|...+|||+.|+.|++..+..-..+.+|...- ..+.+...++
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 34566778999999999999999999985554333333332100 0000110000
Q ss_pred -cchhhc---cc-----cc-----ccCCCCEEEEeCCCCc-------------chhHHHHhcccccceeEEEeeccCCCC
Q 000625 843 -ERTREL---KA-----NA-----TLKVPGLLVIDTPGHE-------------SFTNLRSRGSGLCDIAILVVDIMHGLE 895 (1384)
Q Consensus 843 -~~~~~i---~~-----~~-----~~~~~~i~~IDTPGHe-------------~F~~~r~rg~~~aDiaILVVDa~~Gv~ 895 (1384)
..+..+ .. .. .-....+++||+||.. ....|...++....++||.|.... ..
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hh
Confidence 000000 00 00 1123569999999943 246788888999999999887755 44
Q ss_pred HHHHHHHHHHHhc---CCceEEEEeecccc
Q 000625 896 PQTIESLNLLKMR---NTEFIVALNKVDRL 922 (1384)
Q Consensus 896 ~QT~E~l~llk~~---~vP~IVaINKiDl~ 922 (1384)
--|.++|.+++.. +..+|-|++|.|+.
T Consensus 183 ~ats~alkiarevDp~g~RTigvitK~Dlm 212 (657)
T KOG0446|consen 183 IATSPALVVAREVDPGGSRTLEVITKFDFM 212 (657)
T ss_pred hhcCHHHHHHHhhCCCccchhHHhhhHHhh
Confidence 5666777777764 46788899999985
No 478
>PRK00049 elongation factor Tu; Reviewed
Probab=95.50 E-value=0.031 Score=68.20 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=61.7
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEeec-CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICIP-QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~-~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.+|+ ...+.|+..+|..|+|++|..|.+. -+. -...+|.||+.++.+|.+|..|+-|||.|.+.+. .++
T Consensus 219 ~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~--------~~i 289 (396)
T PRK00049 219 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKR--------EDV 289 (396)
T ss_pred EEEeeCCceEEEEEEEeeeEEecCCEEEEeecCC-CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCH--------HHC
Confidence 3676 4567889999999999999999873 211 2358999999999999999999999999987542 256
Q ss_pred cCCCeEEEe
Q 000625 1341 DIEDELVSH 1349 (1384)
Q Consensus 1341 ~~~d~l~s~ 1349 (1384)
..|++|.+.
T Consensus 290 ~~G~vl~~~ 298 (396)
T PRK00049 290 ERGQVLAKP 298 (396)
T ss_pred CcceEEecC
Confidence 778877553
No 479
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.43 E-value=0.011 Score=69.84 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=43.9
Q ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHcCcc-cccccCceeEeeeeeEecccccccchhhcccccccCCCCEEEEeCCCC
Q 000625 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNV-QEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGH 867 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v-~~ge~gGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~~IDTPGH 867 (1384)
..+...|+|+|-+++|||||+++|....+ ..|..+|+|..+.-..+. ..|.|+|+||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-------------------k~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-------------------KKIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-------------------CCceeccCCce
Confidence 34666799999999999999999987654 566777777655433222 35899999995
No 480
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=95.39 E-value=0.032 Score=68.66 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=64.1
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000625 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|..+-|. .+|+ ...+.|+..+|..|+|+.|..|.+ +.+ ...+|.||+.++.+|.+|..|+-|||.|.+.+.
T Consensus 227 p~r~~i~--~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~-- 299 (426)
T TIGR00483 227 PLRIPIQ--DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSK-- 299 (426)
T ss_pred CcEEEEE--EEEecCCCeEEEEEEEccceeecCCEEEECCCC---cEEEEEEEEECCcccCEEcCCCEEEEEECCCCh--
Confidence 4444444 3776 455788888999999999999998 555 358999999999999999999999999987532
Q ss_pred hhccccccccCCCeEEE
Q 000625 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
.++..|++|..
T Consensus 300 ------~~i~rG~vl~~ 310 (426)
T TIGR00483 300 ------KDIRRGDVCGH 310 (426)
T ss_pred ------hhcccceEEec
Confidence 24666777654
No 481
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.35 E-value=0.017 Score=62.24 Aligned_cols=64 Identities=22% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHHhcCC---ceEEEEeecccc
Q 000625 857 PGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNT---EFIVALNKVDRL 922 (1384)
Q Consensus 857 ~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk~~~v---P~IVaINKiDl~ 922 (1384)
..|.|||||++.... ....+..+|.+|++++.+.--...+..++..+...+. .+.+++|+++..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 679999999875554 4556778999999999765333445556666776663 346899999863
No 482
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.32 E-value=0.077 Score=64.71 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=59.1
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeecC-CceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhcccccccc
Q 000625 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIPQ-RDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFD 1341 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~-~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~ 1341 (1384)
+|+ ...+.|+..+|..|+|++|..|.+.. +.. ...+|.||+.++.+|.+|..|+-|||.|.+.+. ..+.
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~-~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~--------~~i~ 288 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDT-RKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKR--------EEIE 288 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCC-cEEEEEEEEECCeEEEEECCCCEEEEEeCCccH--------HHCC
Confidence 666 45678999999999999999998732 111 247899999999999999999999999986532 2466
Q ss_pred CCCeEEE
Q 000625 1342 IEDELVS 1348 (1384)
Q Consensus 1342 ~~d~l~s 1348 (1384)
.||+|..
T Consensus 289 rG~vl~~ 295 (394)
T TIGR00485 289 RGMVLAK 295 (394)
T ss_pred ccEEEec
Confidence 6776633
No 483
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.32 E-value=0.032 Score=57.70 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHcC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+++|+|++|+|||||+..|...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 484
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.30 E-value=0.014 Score=60.02 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 000625 796 ICCIMGHVDTGKTKLLDCIR 815 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~ 815 (1384)
+|+|+|++|+|||||+..|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 485
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=95.24 E-value=0.07 Score=50.21 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=49.9
Q ss_pred cceEEEEEEEEcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000625 1017 LQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1017 ~~~~VlEvk~~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
|.+.|+.+.+... |.++.++|++|+|++||.|.++..+. -.+|..|....+.....+ .+ +.+|-.+.+
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~~-------~~--~~aGdI~~i 68 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGK--KVRVPRLVRMHSNEMEEV-------EE--AGAGDICAI 68 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCC--EEEEeEEEEEeCCCceEc-------cE--ECCCCEEEE
Confidence 3467888877765 99999999999999999998765432 122333322222211111 11 224656667
Q ss_pred cccccccCCCce
Q 000625 1097 QGLEHAIAGTGL 1108 (1384)
Q Consensus 1097 ~gL~~~~aG~~l 1108 (1384)
.|++ ..+|+++
T Consensus 69 ~g~~-~~~Gdtl 79 (81)
T cd04091 69 FGID-CASGDTF 79 (81)
T ss_pred ECCC-cccCCEe
Confidence 7887 7788876
No 486
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.24 Score=52.68 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHcCcccc-cccCc-eeE-------eeeeeEecccccccchhhccccccc--CCCCEEEEeC
Q 000625 796 ICCIMGHVDTGKTKLLDCIRGTNVQE-GEAGG-ITQ-------QIGATYFPAENIRERTRELKANATL--KVPGLLVIDT 864 (1384)
Q Consensus 796 iV~IlGhvdsGKTTLLd~L~~t~v~~-ge~gG-ITq-------~iga~~~~~~~i~~~~~~i~~~~~~--~~~~i~~IDT 864 (1384)
.|.|.|+||+|||||+-+|...--.. ...+| +|. .+|...+....-+ ..+.+...+ .--+=+.+|+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~---~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGE---EGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCc---eEEEEEcCCCCcccceEEeeH
Confidence 48999999999999998886321111 11222 222 1222222211100 000000000 0001222333
Q ss_pred CCCc-chhHHHHhcccccceeEEEeec---cCCCCHHHHHHHHHHHhcCCceEEEEeeccc
Q 000625 865 PGHE-SFTNLRSRGSGLCDIAILVVDI---MHGLEPQTIESLNLLKMRNTEFIVALNKVDR 921 (1384)
Q Consensus 865 PGHe-~F~~~r~rg~~~aDiaILVVDa---~~Gv~~QT~E~l~llk~~~vP~IVaINKiDl 921 (1384)
-+.+ -+.....+++..+|++ +||= |.-..+...+.+..+...+.|+|+++.+-++
T Consensus 84 ~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 3322 2233444555566764 4553 3333344455666667778899998887765
No 487
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.21 E-value=0.016 Score=67.50 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
+..+|+|+|+.|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999998643
No 488
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.19 E-value=0.069 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHcCc
Q 000625 794 SPICCIMGHVDTGKTKLLDCIRGTN 818 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~ 818 (1384)
..+++|+|++|+|||||+..|...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3569999999999999999998653
No 489
>PLN00043 elongation factor 1-alpha; Provisional
Probab=95.14 E-value=0.043 Score=67.89 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=60.5
Q ss_pred cccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1263 CVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1263 ~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
.||+ ...+.|+..+|..|+|++|..|.+ +.+. ..+|.||+.++.+|.+|..|+.|||.|.+.+. ..+
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~--------~~i 308 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL---TTEVKSVEMHHESLQEALPGDNVGFNVKNVAV--------KDL 308 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC---EEEEEEEEECCeEeCEecCCCeEEEEECCCCH--------hhC
Confidence 3776 455788888999999999999987 5552 58999999999999999999999999987642 245
Q ss_pred cCCCeEEE
Q 000625 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
.-|++|..
T Consensus 309 ~rG~vl~~ 316 (447)
T PLN00043 309 KRGYVASN 316 (447)
T ss_pred CCccEEcc
Confidence 66776644
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=95.14 E-value=0.019 Score=68.99 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHcC
Q 000625 795 PICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 795 piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
-+++|+|++|+|||||++.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999864
No 491
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=95.13 E-value=0.076 Score=50.65 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=51.9
Q ss_pred EEEEEEE---EcCcceEEEEEEEeeeecCCCEEEEccCCCceeEEeeeccCCCCCccceeceeeechhhhcccccceeec
Q 000625 1020 TVLEVKV---IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITA 1096 (1384)
Q Consensus 1020 ~VlEvk~---~~G~G~vi~~iV~~G~Lr~GD~Ivv~g~~g~~~~~Ir~Ll~p~p~~e~rvk~~~~~~kev~aa~gv~i~~ 1096 (1384)
.|+.+.. .+..|..+.++|++|+|+.||.|....... -.+|..|+.+.......+ . .+.+|-.+++
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~--~~kv~~l~~~~g~~~~~v-------~--~a~aGdIv~v 70 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGK--EVRLSNPQQFFAQDRETV-------D--EAYPGDIIGL 70 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCC--EEEeeEeEEEecCCeeEc-------C--EECCCCEEEE
Confidence 5667767 778899999999999999999997655321 123333432222211111 1 1335778888
Q ss_pred cccccccCCCceE
Q 000625 1097 QGLEHAIAGTGLY 1109 (1384)
Q Consensus 1097 ~gL~~~~aG~~l~ 1109 (1384)
.||....+|++|.
T Consensus 71 ~gl~~~~~Gdtl~ 83 (85)
T cd03689 71 VNPGNFQIGDTLT 83 (85)
T ss_pred ECCCCccccCEee
Confidence 8998888888773
No 492
>CHL00071 tufA elongation factor Tu
Probab=95.01 E-value=0.058 Score=66.10 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=59.2
Q ss_pred ccc-CCCCeEEEEEEeeceEecCCCEeec--CCceeeeeEEecccccccccccccCCCeEEEEEecCCchhhhccccccc
Q 000625 1264 VFN-KKDPIVLGVDVVEGIAKVGTPICIP--QRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHF 1340 (1384)
Q Consensus 1264 vf~-~~~~~IaG~~V~~G~l~~g~~~~v~--~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f 1340 (1384)
+|+ ...+.|+..+|..|+|+.|..|.+. +.. ...+|.||+.++.+|++|..|+-|||.|.+.+. .++
T Consensus 228 v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~--~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~--------~~i 297 (409)
T CHL00071 228 VFSITGRGTVATGRIERGTVKVGDTVEIVGLRET--KTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQK--------EDI 297 (409)
T ss_pred EEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC--cEEEEEEEEEcCcCCCEECCCceeEEEEcCCCH--------HHc
Confidence 665 3457888889999999999999863 221 357999999999999999999999999987542 246
Q ss_pred cCCCeEEE
Q 000625 1341 DIEDELVS 1348 (1384)
Q Consensus 1341 ~~~d~l~s 1348 (1384)
..||+|.+
T Consensus 298 ~~G~vl~~ 305 (409)
T CHL00071 298 ERGMVLAK 305 (409)
T ss_pred CCeEEEec
Confidence 66777744
No 493
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.00 E-value=0.13 Score=63.31 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHcC
Q 000625 793 RSPICCIMGHVDTGKTKLLDCIRGT 817 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t 817 (1384)
++.+|+|+|.+|+||||+...|...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~ 278 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYR 278 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998643
No 494
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=94.99 E-value=0.12 Score=51.56 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.2
Q ss_pred ccccceEEEEEEEEc--------CcceEEEEEEEeeeecCCCEEEEc
Q 000625 1014 RNELQCTVLEVKVIE--------GHGTTIDVVLVNGVLHEGDQIVVC 1052 (1384)
Q Consensus 1014 ~~~~~~~VlEvk~~~--------G~G~vi~~iV~~G~Lr~GD~Ivv~ 1052 (1384)
..++.+.|..+|.+. ++|.|+.+.|.+|+|++||.|-|.
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIr 49 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIR 49 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEe
Confidence 457889999999998 999999999999999999999664
No 495
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.99 E-value=0.1 Score=59.98 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHHHHH----hcCCce-EEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLK----MRNTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~llk----~~~vP~-IVaINKiDl 921 (1384)
.+.+.||||||+..... +...+..+|.+|+++...--....+...++.+. ..++++ .|++|+++.
T Consensus 115 ~yD~ViID~~~~~~~~~-~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGG-FATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCc-cccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 36799999998632111 123467899999988653221122223333332 235654 478899884
No 496
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.96 E-value=0.049 Score=67.03 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=63.4
Q ss_pred ceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccccccccccccCCCeEEEEEecCCchh
Q 000625 1254 PCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEE 1331 (1384)
Q Consensus 1254 p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~~k~~V~ea~kG~EcgI~i~~~~~~~ 1331 (1384)
|..+-|. .+|+ +..+.|+..+|..|+|++|..|.+ +.+. ..+|.||+.++.+|..|..|+-|||.|.+.+.
T Consensus 225 p~r~~i~--~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~-- 297 (425)
T PRK12317 225 PLRIPIQ--DVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGV---VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGK-- 297 (425)
T ss_pred CcEEEEE--EEEeeCCCeEEEEEEEeeccEecCCEEEECCCCC---eEEEEEEEECCcccCEECCCCeEEEEECCCCH--
Confidence 4344444 3676 456788889999999999999988 4442 58999999999999999999999999987542
Q ss_pred hhccccccccCCCeEEE
Q 000625 1332 QQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1332 ~~~~~gr~f~~~d~l~s 1348 (1384)
.++..||+|..
T Consensus 298 ------~~i~rG~vl~~ 308 (425)
T PRK12317 298 ------KDIKRGDVCGH 308 (425)
T ss_pred ------HHccCccEecC
Confidence 24566776643
No 497
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.91 E-value=0.093 Score=58.25 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCcchhHHHH-hcccccceeEEEeeccCCCC---HHHHHHHHHHHhc-CCce-EEEEeeccc
Q 000625 856 VPGLLVIDTPGHESFTNLRS-RGSGLCDIAILVVDIMHGLE---PQTIESLNLLKMR-NTEF-IVALNKVDR 921 (1384)
Q Consensus 856 ~~~i~~IDTPGHe~F~~~r~-rg~~~aDiaILVVDa~~Gv~---~QT~E~l~llk~~-~vP~-IVaINKiDl 921 (1384)
.+.|.||||||+........ .....||.+|+|+..+.--. ....+.+..++.. ++++ .|++|+++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 35799999998753222211 11247999999997643111 2233344444332 5444 489999984
No 498
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=94.90 E-value=0.064 Score=68.90 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHhccceecceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEeecCCceeeeeEEeccccc
Q 000625 1229 FDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENN 1307 (1384)
Q Consensus 1229 ~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v~~~~~i~~G~i~Slk~~ 1307 (1384)
++.+..++..+..+... .--|..+-|-. +|. +..+.|+...|..|+|++|..|.+... -...+|.||+.+
T Consensus 154 I~~L~~~L~~~~~~~~~-----~~~~~rl~Id~--vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~--~~~~~VrsIq~~ 224 (614)
T PRK10512 154 IDALREHLLQLPEREHA-----AQHRFRLAIDR--AFTVKGAGLVVTGTALSGEVKVGDTLWLTGV--NKPMRVRGLHAQ 224 (614)
T ss_pred CHHHHHHHHHhhccccC-----cCCCceEEEEE--EeccCCCeEEEEEEEecceEecCCEEEEcCC--CCcEEEEEEecC
Q ss_pred ccccccccCCCeEEEEEec-CCchhhhccccccccCCCeEEE
Q 000625 1308 HKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1308 k~~V~ea~kG~EcgI~i~~-~~~~~~~~~~gr~f~~~d~l~s 1348 (1384)
+.+|.+|..|+-|||.|.| .+. ..+.-||+|.+
T Consensus 225 ~~~v~~a~aG~rval~l~g~~~~--------~~i~rGdvl~~ 258 (614)
T PRK10512 225 NQPTEQAQAGQRIALNIAGDAEK--------EQINRGDWLLA 258 (614)
T ss_pred CcCCCEEeCCCeEEEEecCCCCh--------hhCCCcCEEeC
No 499
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.89 E-value=0.072 Score=60.07 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred CEEEEEc-CCCCCHHHHHHHHHcCccccccc---------Ccee-----------------------------EeeeeeE
Q 000625 795 PICCIMG-HVDTGKTKLLDCIRGTNVQEGEA---------GGIT-----------------------------QQIGATY 835 (1384)
Q Consensus 795 piV~IlG-hvdsGKTTLLd~L~~t~v~~ge~---------gGIT-----------------------------q~iga~~ 835 (1384)
++|+|++ ..|+||||+.-.|...-...|.. +.++ ...+...
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Q ss_pred ecccc------------cccchhhcccccccCCCCEEEEeCCCCcchhHHHHhcccccceeEEEeeccCCCCHHHHHHHH
Q 000625 836 FPAEN------------IRERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLN 903 (1384)
Q Consensus 836 ~~~~~------------i~~~~~~i~~~~~~~~~~i~~IDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ 903 (1384)
+|... .......+-.........+.|||||+ .+..+....+..||.+|+|+..+.--...+...+.
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp--~~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~ 159 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPR--GPSPITRQALAAADLVLVVVNADAACYATLHQQAL 159 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCC--CchHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHH
Q ss_pred HHHh---cCCceEEEEeecc
Q 000625 904 LLKM---RNTEFIVALNKVD 920 (1384)
Q Consensus 904 llk~---~~vP~IVaINKiD 920 (1384)
.+.. ...++-|++|++|
T Consensus 160 ~l~~~~~~~~~~~iv~n~~~ 179 (246)
T TIGR03371 160 ALFAGSGPRIGPHFLINQFD 179 (246)
T ss_pred HHhhcccccccceEEeeccC
No 500
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.074 Score=64.10 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHhccceecceeeeeccccccc-CCCCeEEEEEEeeceEecCCCEee-cCCceeeeeEEecccc
Q 000625 1229 FDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVFN-KKDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIEN 1306 (1384)
Q Consensus 1229 ~d~~~~~~~~~~~~~~~~~~~~av~p~~~~i~~~~vf~-~~~~~IaG~~V~~G~l~~g~~~~v-~~~~~i~~G~i~Slk~ 1306 (1384)
|++++++|..+.+......-+.. +|.-+++|. +..++|+=-.|..|+++.|..+.+ +-| ..=+|.||+.
T Consensus 150 I~~Lk~~l~~L~~~~e~d~~~~f------ri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~---k~v~VRsIq~ 220 (447)
T COG3276 150 IEELKNELIDLLEEIERDEQKPF------RIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN---KEVRVRSIQA 220 (447)
T ss_pred HHHHHHHHHHhhhhhhhccCCce------EEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC---CeEEEEeeee
Q ss_pred cccccccccCCCeEEEEEecCCchhhhccccccccCCCeEEE
Q 000625 1307 NHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDELVS 1348 (1384)
Q Consensus 1307 ~k~~V~ea~kG~EcgI~i~~~~~~~~~~~~gr~f~~~d~l~s 1348 (1384)
+..++++|..|+.||+.|.|-.. ..++-||.|.+
T Consensus 221 ~d~d~~~a~AG~RVgLaL~~v~~--------eei~RG~~L~~ 254 (447)
T COG3276 221 HDVDVEEAKAGQRVGLALKGVEK--------EEIERGDWLLK 254 (447)
T ss_pred cCcchhhccccceeeeecCCCCH--------HHhhcccEecc
Done!