Query 000626
Match_columns 1384
No_of_seqs 640 out of 4497
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 17:13:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000626.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_398-402//hhsearch_pdb/000626hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g7s_A Translation initiation 1.0 1 1 907.0 47.3 577 791-1383 2-583 (594)
2 1zo1_I IF2, translation initia 1.0 1 1 710.6 12.0 473 792-1353 2-497 (501)
3 3izy_P Translation initiation 1.0 1 1 682.9 13.4 471 792-1349 2-536 (537)
4 3vqt_A RF-3, peptide chain rel 1.0 1 1 294.6 14.3 298 787-1109 26-397 (548)
5 3mca_A HBS1, elongation factor 1.0 1 1 287.8 15.9 255 794-1114 177-489 (592)
6 1wb1_A Translation elongation 1.0 1 1 285.4 15.5 257 788-1110 13-280 (482)
7 3j25_A Tetracycline resistance 1.0 1 1 285.4 10.7 258 791-1062 1-293 (638)
8 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 283.5 25.1 263 793-1115 16-328 (439)
9 4fn5_A EF-G 1, elongation fact 1.0 1 1 282.8 19.5 290 789-1109 10-401 (709)
10 3avx_A Elongation factor TS, e 1.0 1 1 282.3 19.5 258 794-1114 296-581 (1289)
No 1
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=906.97 Aligned_cols=577 Identities=37% Similarity=0.669 Sum_probs=521.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCC--CCCCCCCCEEEEECCCCC
Q ss_conf 689988999928999977999999839634555575137520368103321000000013--434577978999199983
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKA--NATLKVPGLLVIDTPGHE 868 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~--~~~~~~~~i~iIDTPGHe 868 (1384)
++|+|+|+|+||+|||||||+++|+++.+..++.+|||+++|++++++..+...+..+.. ...+..+.|+|||||||+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCH
T ss_conf 98881999999999739999999966667656678600213719986201121024323553222554888999897937
Q ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11678871036666139986146899788899999987129936999931244347645888138999997649999999
Q 000626 869 SFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEF 948 (1384)
Q Consensus 869 ~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef 948 (1384)
+|+.++.++++.||++|||||+++|+++||.++|.++...++|+||++||||+...|....+.+|...+..+...++..|
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999997775399999999799885476799999999749809999625666433333347746899987678888877
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCEEEEEEEE
Q ss_conf 9999999999998078213320124789831499478767989114799999999998998631--14555017999999
Q 000626 949 NMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLT--FRNELQCTVLEVKV 1026 (1384)
Q Consensus 949 ~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L~--~~~~~~~~VlEvk~ 1026 (1384)
...+..+...|.+.|++.+.|+....++..+|+||+||++|.||.+|+.+|..+++.++...+. ...++++.|++++.
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~ 241 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKE 241 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEE
T ss_conf 77899999999875861678998875167622898764678882557899975340000234124557885048999998
Q ss_pred ECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCE-ECEEEECHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf 8185048999999206527988987167896067765303898883110-010221001010124605501565323579
Q 000626 1027 IEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELR-VKGTYLHHKQIKAAQGIKITAQGLEHAIAG 1105 (1384)
Q Consensus 1027 i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~r-vk~~~~~~k~V~aa~gvki~~~gL~~a~aG 1105 (1384)
++|.|++++++|++|+|+.||.|++++.+++..++|++|++|.|+.+++ ..+.+...+++.+++|+.+++.||..+.+|
T Consensus 242 d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~G 321 (594)
T 1g7s_A 242 ETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAG 321 (594)
T ss_dssp ETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTT
T ss_pred ECCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCCCCC
T ss_conf 07957999999962879619999988889845689869980266213331357856813885799809997466788999
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 94499299861899999999989999763200487359970896769999987224980232677422765330498998
Q 000626 1106 TGLYVVGPDDDLEDVKEEAMEDMKSVMSRIDKSGEGVCVQASTLGSLEALLEFLKSDAVKIPVSGISIGPVHKKDVMRAS 1185 (1384)
Q Consensus 1106 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gv~vkadt~GSlEAl~~~L~~~~~~i~v~~~~vG~V~~~DV~~A~ 1185 (1384)
++|.++.++ +.++..++.++.++ ++.....||||||||+||||||+++|.. .+|||++++||+||++||++|+
T Consensus 322 d~l~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~vkad~~gs~eal~~~l~~--~~~~v~~~~vg~i~~~dv~~a~ 394 (594)
T 1g7s_A 322 SPLRVVTDP---EKVREEILSEIEDI--KIDTDEAGVVVKADTLGSLEAVVKILRD--MYVPIKVADIGDVSRRDVVNAG 394 (594)
T ss_dssp CEEEECSSH---HHHHHHHHHHHHTT--SCBCSSSCCEEEESSHHHHHHHHHHHHH--TTCCCSEEEESSBCHHHHHHHH
T ss_pred CEEEECCCH---HHHHHHHHHHHHHC--CCCCCCCCEEEEECCCCCHHHHHHHHHH--CCCCEEECCCCCCCHHHHHHHH
T ss_conf 988815998---99999999988743--3544446479983787889999999984--7875795146888788999987
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCCC
Q ss_conf 53100258729998089999779999998098099823377899999999823357777774052000304666156201
Q 000626 1186 VMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKREAADEAVFPCVLKILPNCVF 1265 (1384)
Q Consensus 1186 ~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~~~~av~p~~l~i~~~~vf 1265 (1384)
++++++|.||+||||||+++++|+.+|++.||+||+|+|||||+|+|++||++++++.+++..+.++|||.++|+|++||
T Consensus 395 ~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f 474 (594)
T 1g7s_A 395 IALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVF 474 (594)
T ss_dssp HHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEEEE
T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEEEEEECCEEE
T ss_conf 43113767878999578689889999997498699877799999999998653045155544324420289999311389
Q ss_pred CCCCCEEEEEEEEECEEECCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCE
Q ss_conf 68999589899963067309977605991321257710112364323333798089998349960000011532467995
Q 000626 1266 NKKDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSNSEEQQKMFGRHFDIEDE 1345 (1384)
Q Consensus 1266 ~~~~p~IaG~~V~~G~ik~g~~i~v~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~~~~~~~~~gr~f~~~d~ 1345 (1384)
+.++|+||||+|++|+|++|+++|+|++ +|.|+|.||+|+|++|++|++|+||||+|++| ++||||.+||+
T Consensus 475 ~~~~~~i~g~~v~~G~~~~~~~~~~~~~--~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~-------~~~~~~~~~d~ 545 (594)
T 1g7s_A 475 RQSKPAIGGVEVLTGVIRQGYPLMNDDG--ETVGTVESMQDKGENLKSASRGQKVAMAIKDA-------VYGKTIHEGDT 545 (594)
T ss_dssp ECSSSEEEEEEEEEEEEETTCEEECTTS--CEEEEEEEEEETTEEESEEETTCCEEEEEETC-------CBTTTBCTTCE
T ss_pred CCCCCEEEEEEEECCEEECCCEEEECCC--CEEEEEEHHCCCCCCCCCCCCCCEEEEEEECC-------CCCCCCCCCCE
T ss_conf 2799869999996188954985996699--37998851321584225127897899998376-------55788987989
Q ss_pred EEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99944345699999994301899899999997532179
Q 000626 1346 LVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKNLFKI 1383 (1384)
Q Consensus 1346 l~s~i~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~i 1383 (1384)
|||+|+|+++++|++|||++||.++|+||.+||++|.-
T Consensus 546 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (594)
T 1g7s_A 546 LYVDIPENHYHILKEQLSGDLTDEELDLMDKIAEIKRK 583 (594)
T ss_dssp EEECCCHHHHHTTTSCC---CCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 99999858899999998766899999999999998563
No 2
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=710.62 Aligned_cols=473 Identities=28% Similarity=0.431 Sum_probs=385.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89988999928999977999999839634555575137520368103321000000013434577978999199983116
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1384)
.|+|+|+|+||+|||||||+++|+++.+..++.+|||++++.+.+.+.. ..|+|||||||+.|.
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS----------------SCCCEECCCTTTCCT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECC----------------EEEEEEECCCCHHHH
T ss_conf 9870999999999988999999976887535689703767799999899----------------899999899857889
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78871036666139986146899788899999987129936999931244347645888138999997649999999999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
.++.++++.||++|||||+++|+++||+++|.++...++|+||++||||++. |....
T Consensus 66 ~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~-~~~~~---------------------- 122 (501)
T 1zo1_I 66 SMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPE-ADPDR---------------------- 122 (501)
T ss_dssp TSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSST-TCCCC----------------------
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC-CCHHH----------------------
T ss_conf 9999887538899999425667627789999988862964999997326543-57778----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 99999999980782133201247898314994787679891147999999999989986311455501799999981850
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L~~~~~~~~~VlEvk~i~G~G 1031 (1384)
+...+...++.. ..|+..+++|++||++|.||.+|+.+|..... .+.....+..++.++|++++.+.|+|
T Consensus 123 ---v~~~l~~~~~~~------~~~~~~~~~v~vSAktG~gI~eLle~I~~~~~-~~~~~~~~~~~~~~~V~e~~~d~g~G 192 (501)
T 1zo1_I 123 ---VKNELSQYGILP------EEWGGESQFVHVSAKAGTGIDELLDAILLQAE-VLELKAVRKGMASGAVIESFLDKGRG 192 (501)
T ss_dssp ---TTCCCCCCCCCT------TCCSSSCEEEECCTTTCTTCTTHHHHTTTTCC-CSTTTSCCCSBCEEEEEEEEECSSSS
T ss_pred ---HHHHHHHHHHHH------HHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCEEEEEEECCCE
T ss_conf ---889998721028------87278760799864303574035555565554-32101223565543159999727928
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCCCCCCEEECCCCCC-CCCCCCEEE
Q ss_conf 4899999920652798898716789606776530389888311001022100101012460550156532-357994499
Q 000626 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKAAQGIKITAQGLEH-AIAGTGLYV 1110 (1384)
Q Consensus 1032 ~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~aa~gvki~~~gL~~-a~aG~~l~v 1110 (1384)
++++++|.+|+|+.||.|+++ +..++||+|++++... + ++ +.+|..+.+.||.. +.+|+.+++
T Consensus 193 ~v~~~~V~~Gtlk~Gd~v~~g----~~~~kVr~i~~~~g~~---v-------~~--a~~g~~V~i~gl~~~~~~Gd~~~~ 256 (501)
T 1zo1_I 193 PVATVLVREGTLHKGDIVLCG----FEYGRVRAMRNELGQE---V-------LE--AGPSIPVEILGLSGVPAAGDEVTV 256 (501)
T ss_dssp EEEEEEEEESBCCTTCEEEEE----BSSCEEEEECCTTTTS---E-------EE--ECCSSCSSSEEECSCCCTTEEEEE
T ss_pred EEEEEEEEEEEEECCCEEEEC----CCEEEEEEEEECCCCC---C-------CE--ECCCCCEEEECCCCCCCCCCEEEE
T ss_conf 999999985699059889976----5133999998048986---7-------58--645772799678798989998994
Q ss_pred ECCCCCHHH-------------HHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHC---CCCEEEEEEEE
Q ss_conf 299861899-------------99999998999976320---048735997089676999998722---49802326774
Q 000626 1111 VGPDDDLED-------------VKEEAMEDMKSVMSRID---KSGEGVCVQASTLGSLEALLEFLK---SDAVKIPVSGI 1171 (1384)
Q Consensus 1111 ~~~~~~~~~-------------~~~~~~~~~~~~~~~i~---~~~~gv~vkadt~GSlEAl~~~L~---~~~~~i~v~~~ 1171 (1384)
+.++..++. +.......+.++++++. ....||||||||+||||||+++|. +++++++|+++
T Consensus 257 ~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~~~ 336 (501)
T 1zo1_I 257 VRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGS 336 (501)
T ss_dssp ECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 28878988999999999999987665330699998666316874577999978867899999999861645630479981
Q ss_pred ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 227653304989985310025872999808999977999999809809982337789999999982335777777-4052
Q 000626 1172 SIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFTAYINNLKEEKKRE-AADE 1250 (1384)
Q Consensus 1172 ~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~-~~~~ 1250 (1384)
+||+||++||++|++ +||+||||||+++++|+.+|++.||+||+|+|||||+|+|++||.+++++..++ ..|.
T Consensus 337 ~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~~~~g~ 410 (501)
T 1zo1_I 337 GVGGITETDATLAAA------SNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGL 410 (501)
T ss_dssp SSSSSHHHHSTTTCG------GGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSSTTCCCCCCCC
T ss_pred CCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 368889899998773------18879995588997899999974987999077999999999998764184256420058
Q ss_pred EECCEEEEECCCCCCCC-CCCEEEEEEEEECEEECCCCEEE-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 00030466615620168-99958989996306730997760-59913212577101123643233337980899983499
Q 000626 1251 AVFPCVLKILPNCVFNK-KDPIVLGVDVVEGIAKVGTPICI-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAGSN 1328 (1384)
Q Consensus 1251 av~p~~l~i~~~~vf~~-~~p~IaG~~V~~G~ik~g~~i~v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~~~ 1328 (1384)
|. |+. ||+. +.|+||||+|++|+|++|+++|+ |++.+||.|+|.||+|+|++|++|++|+||||+|++||
T Consensus 411 a~------v~~--~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~~ 482 (501)
T 1zo1_I 411 AE------VRD--VFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYN 482 (501)
T ss_dssp EE------EEE--CSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCCT
T ss_pred EE------EEE--EEECCCCCEEEEEEEEECEEECCCEEEEEECCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCC
T ss_conf 99------999--9965999889999997088963985999708808998788113436862169889988999975857
Q ss_pred CHHHHCCCCCCCCCCCEEEEECCHH
Q ss_conf 6000001153246799599944345
Q 000626 1329 SEEQQKMFGRHFDIEDELVSHISRK 1353 (1384)
Q Consensus 1329 ~~~~~~~~gr~f~~~d~l~s~i~~~ 1353 (1384)
+|.+||+|++|...+
T Consensus 483 ----------~~~~gd~~~~~~~~~ 497 (501)
T 1zo1_I 483 ----------DVRTGDVIEVFEIIE 497 (501)
T ss_dssp ----------TCCTTCEEEECCCTT
T ss_pred ----------CCCCCCEEEEEEEEE
T ss_conf ----------799898999999999
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=682.92 Aligned_cols=471 Identities=27% Similarity=0.388 Sum_probs=379.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89988999928999977999999839634555575137520368103321000000013434577978999199983116
Q 000626 792 LRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLLVIDTPGHESFT 871 (1384)
Q Consensus 792 ~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~ 871 (1384)
.|+|+|+||||+|||||||+++|+++.+...+.+|||++++.+.+.+... ..|+|||||||+.|.
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g---------------~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG---------------EKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS---------------SCCBCEECSSSCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCC---------------CEEEEEECCCHHHHH
T ss_conf 98999999999899989999999588766201796668876999994899---------------789999898848999
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78871036666139986146899788899999987129936999931244347645888138999997649999999999
Q 000626 872 NLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMR 951 (1384)
Q Consensus 872 ~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~ 951 (1384)
.++.++++.+|++|||||+++|+++||.++|.++...++|+||++||||++.. ....
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~-~~~~---------------------- 123 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEA-DPEK---------------------- 123 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTT-SCCS----------------------
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHH----------------------
T ss_conf 99999871198899999799986477899999998759968999943432334-2588----------------------
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 99999999980782133201247898314994787679891147999999999989986311455501799999981850
Q 000626 952 LVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHG 1031 (1384)
Q Consensus 952 i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L~~~~~~~~~VlEvk~i~G~G 1031 (1384)
+...+...++... .|+..+++|++||++|.||.+|+.+|..+++. +.....+..+++++|++++.++|+|
T Consensus 124 ---v~~~l~~~~~~~e------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~-~~~~~~~~~~~~~~V~e~~~~~g~G 193 (537)
T 3izy_P 124 ---VKKELLAYDVVCE------DYGGDVQAVHVSALTGENMMALAEATIALAEM-LELKADPTGAVEGTVIESFTDKGRG 193 (537)
T ss_dssp ---SSSHHHHTTSCCC------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT-CCCCCCSSSSEEEEEEEECCCTTCC
T ss_pred ---HHHHHHHHHHHHH------HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf ---9999986301377------61898339999788799950478999986530-3555788788611689999848975
Q ss_pred EEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHC-CCCCCEEECCCCCC-CCCCCCEE
Q ss_conf 48999999206527988987167896067765303898883110010221001010-12460550156532-35799449
Q 000626 1032 TTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIK-AAQGIKITAQGLEH-AIAGTGLY 1109 (1384)
Q Consensus 1032 ~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~-aa~gvki~~~gL~~-a~aG~~l~ 1109 (1384)
++++++|.+|+|+.||.++ + |..+++||+|+.+.. ..+. +.+|..+.+.||.. +.+|+.|.
T Consensus 194 ~V~~g~V~~G~l~~Gd~v~-~---g~~~~kVr~i~~~~g-------------~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 194 PVTTAIIQRGTLRKGSILV-A---GKSWAKVRLMFDENG-------------RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CCEEEEEEEECCSSEEEEC-C---SSCCEEEEEEEECCC-------------CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEEECCEEECCCEEE-E---CCCEEEEEEEECCCC-------------CCCCEECCCCEEEEECCCCCCCCCCEEE
T ss_conf 3999999668897699997-3---895499999996899-------------7976986999799978878999999999
Q ss_pred EECCCCCHHHH--------HH-----------------------HHH--------HHHHHHHH--------H------HH
Q ss_conf 92998618999--------99-----------------------999--------98999976--------3------20
Q 000626 1110 VVGPDDDLEDV--------KE-----------------------EAM--------EDMKSVMS--------R------ID 1136 (1384)
Q Consensus 1110 v~~~~~~~~~~--------~~-----------------------~~~--------~~~~~~~~--------~------i~ 1136 (1384)
++.++..+..+ .. ... +.+...+. + ..
T Consensus 257 ~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
T 3izy_P 257 EVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERD 336 (537)
T ss_dssp SCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHHHHHCTTTTCCCCCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCC
T ss_conf 56875899999999999999876532133344444555677787665410110355556666532211101101210256
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHC---C-CCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 048735997089676999998722---4-980232677422765330498998531002587299980899997799999
Q 000626 1137 KSGEGVCVQASTLGSLEALLEFLK---S-DAVKIPVSGISIGPVHKKDVMRASVMLEKKKEYATILAFDVKVTPEARELA 1212 (1384)
Q Consensus 1137 ~~~~gv~vkadt~GSlEAl~~~L~---~-~~~~i~v~~~~vG~V~~~DV~~A~~~~~~~~~~a~IlaFnVkv~~~a~~~A 1212 (1384)
....++||||||+||||||+.+|. + ++++++|++++||+||++||++|++ ++|+||||||++++.++.+|
T Consensus 337 ~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~------~~a~i~~fnv~~~~~~~~~a 410 (537)
T 3izy_P 337 SNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAET------FHGVIYGFNVNAGNVIQQLA 410 (537)
T ss_dssp CCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHH------HSCCEEESSCCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHH------CCCEEEEECCCCCHHHHHHH
T ss_conf 642559999677360999999998568887078999983078898889999874------48869995578897899999
Q ss_pred HHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEECCEEEEECCCCCCC--CCCCEEEEEEEEECEEECCCCEE
Q ss_conf 98098099823377899999999823357777774-0520003046661562016--89995898999630673099776
Q 000626 1213 EELGVKIFIADIIYHLFDQFTAYINNLKEEKKREA-ADEAVFPCVLKILPNCVFN--KKDPIVLGVDVVEGIAKVGTPIC 1289 (1384)
Q Consensus 1213 ~~~gV~I~~~~IIY~L~d~~~~~~~~~~~~~~~~~-~~~av~p~~l~i~~~~vf~--~~~p~IaG~~V~~G~ik~g~~i~ 1289 (1384)
++.||+|++|+|||||+|+|+++|.+++++...+. .|.| .|++.|.|+ ++.|.||||+|++|+|++++++|
T Consensus 411 ~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a------~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r 484 (537)
T 3izy_P 411 AKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEA------SILATFSITEGKKKVPVAGCRVQKGQIEKQKKFK 484 (537)
T ss_dssp HHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEE------EEEEEESSCSSSCCSCEEEEEECSSEEESSSEEE
T ss_pred HHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEE------EECCCEEECCCCCCCCEEEEEEEECEEEECCEEE
T ss_conf 8769869992749999999999997426870378888999------9958189888775671789999727286088079
Q ss_pred E-CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEC-CCCHHHHCCCCCCCCCCCEEEEE
Q ss_conf 0-599132125771011236432333379808999834-99600000115324679959994
Q 000626 1290 I-PQRDFIDIGRIASIENNHKPVDTAKKGQKAAIKIAG-SNSEEQQKMFGRHFDIEDELVSH 1349 (1384)
Q Consensus 1290 v-~~~~~i~~G~I~Slk~~k~~V~ea~kG~evgI~i~~-~~~~~~~~~~gr~f~~~d~l~s~ 1349 (1384)
| |++.+||.|+|.||+|++++|++|++|+||||+|++ || +|.+||+|.+|
T Consensus 485 ~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~----------~~~~gd~ie~~ 536 (537)
T 3izy_P 485 LIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKI----------EFKVGDAIICY 536 (537)
T ss_dssp EESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCS----------SCSCCCEEEEE
T ss_pred EECCCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCCC----------CCCCCCEEEEE
T ss_conf 96499899998883034258254357689889999717645----------79989789996
No 4
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=294.59 Aligned_cols=298 Identities=19% Similarity=0.222 Sum_probs=196.4
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE--EEEEECC-CCCCCCHHHCCC---CCCCCCCCEE
Q ss_conf 000168998899992899997799999983963455557513752--0368103-321000000013---4345779789
Q 000626 787 QAEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQI--GATYFPA-ENIRERTRELKA---NATLKVPGLL 860 (1384)
Q Consensus 787 ~s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~i--ga~~~~~-~~i~~~~~~i~~---~~~~~~~~i~ 860 (1384)
....++|| |+|+||+|||||||+++|++..-.....|.+.... +.++..+ ...++|++++.. .+.|+...||
T Consensus 26 ~e~~r~RN--iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iN 103 (548)
T 3vqt_A 26 REAARRRT--FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVN 103 (548)
T ss_dssp HHHHTEEE--EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEE
T ss_pred HCCCCCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEEEECCEEEE
T ss_conf 11136666--9999089988999999999866863215416437665543367728898779747504699987998999
Q ss_pred EEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99199983116788710366661399861468997888999999871299369999312443476458881389999976
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 861 iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|||||||.+|+..+.|+++.||+||||||+..|+++||...|+++..+++|+|++|||||+. +++|...+...
T Consensus 104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~-------~ad~~~~~~~i 176 (548)
T 3vqt_A 104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE-------ALHPLDVMADI 176 (548)
T ss_dssp EECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC-------CCCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCH-------HCCHHHHHHHH
T ss_conf 99698827778999999975680599830588730441889999987187369887346601-------10266754455
Q ss_pred HHHHHH-------------------------------------------------HHH-------HHHHHHHHHHHHCCC
Q ss_conf 499999-------------------------------------------------999-------999999999998078
Q 000626 941 NTDVQN-------------------------------------------------EFN-------MRLVQIVTQLKEQGM 964 (1384)
Q Consensus 941 ~~~i~~-------------------------------------------------ef~-------~~i~~I~~~L~~~Gl 964 (1384)
...+.. .+. .........+...+.
T Consensus 177 ~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (548)
T 3vqt_A 177 EQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGT 256 (548)
T ss_dssp HHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54238824767722515885330576531343210423378643232322354388999888888876668988754057
Q ss_pred --CHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH------HCCCCCCEEEEEEEEE---CCCCEE
Q ss_conf --21332012478983149947876798911479999999999899863------1145550179999998---185048
Q 000626 965 --NTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKL------TFRNELQCTVLEVKVI---EGHGTT 1033 (1384)
Q Consensus 965 --~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L------~~~~~~~~~VlEvk~i---~G~G~v 1033 (1384)
..+.+ .-|..+|+++.||++|.||..||+.++.+++.+..... ....++.+.|+.+... ..+|.+
T Consensus 257 ~~~~e~~----~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grl 332 (548)
T 3vqt_A 257 PFDEERY----LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRM 332 (548)
T ss_dssp CCCHHHH----HTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CE
T ss_pred CHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEE
T ss_conf 3649999----829831026145455858999999999747998775432345589976743799999705776778769
Q ss_pred EEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCC-CCCCEEECCCCCCCCCCCCEE
Q ss_conf 9999992065279889871678960677653038988831100102210010101-246055015653235799449
Q 000626 1034 IDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA-AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1034 v~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~a-a~gvki~~~gL~~a~aG~~l~ 1109 (1384)
..++|++|+|+.|+.|.....+. ..+|..++...+.. ...|.. .+|..+++.||.....|+++.
T Consensus 333 a~~RV~sG~l~~g~~v~~~~~~~--~~rv~~l~~~~g~~----------~~~v~~a~AGdIvai~gl~~~~~GDTl~ 397 (548)
T 3vqt_A 333 AFLRICSGTFTRGMRLKHHRTGK--DVTVANATIFMAQD----------RTGVEEAFPGDIIGIPNHGTIKIGDTFT 397 (548)
T ss_dssp EEEEEEESCEETTCEEEETTTTE--EEECTTCEECCCSS----------CCSSCEECTTCEEEEECSSCCCTTCEEE
T ss_pred EEEEEECCEECCCCEEEEECCCC--CCCCCHHHHHCCCC----------CCCCCEEECCCEEEECCCCCCCCCCEEC
T ss_conf 99998535445899898412333--00001133420566----------6436788469899856876676378816
No 5
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=287.76 Aligned_cols=255 Identities=25% Similarity=0.311 Sum_probs=179.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------CCCCCCEEEEEEEEEECCCCCC
Q ss_conf 988999928999977999999839634-------------------------------5555751375203681033210
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQ-------------------------------EGEAGGITQQIGATYFPAENIR 842 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~-------------------------------~geagGITq~iga~~~~~~~i~ 842 (1384)
.++|+|+||+|||||||+++|++.... ....+|||++++...+.+
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~---- 252 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES---- 252 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEEE----
T ss_conf 5189998589998899999999871885467889887767651875201344422534441388169753899971----
Q ss_pred CCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCC-----C--CHHHHHHHHHHHHCCCC-EEE
Q ss_conf 000000134345779789991999831167887103666613998614689-----9--78889999998712993-699
Q 000626 843 ERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHG-----L--EPQTIESLNLLKMRNTE-FIV 914 (1384)
Q Consensus 843 ~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~G-----v--~~QT~E~l~ll~~~~vP-~IV 914 (1384)
....|+|||||||..|..++.++++.||++|||||+++| + ++||.+++.++..+++| +||
T Consensus 253 ------------~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 253 ------------DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred ------------CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf ------------99489999899828889999988865899999997887752224465557999999999839984999
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 993124434764588813899999764999999999999999999-9807821332012478983149947876798911
Q 000626 915 ALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQL-KEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 915 viNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L-~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~ 993 (1384)
|+||||++. |.. ..+......+...+ ...|+.. ..+++||+||++|.||.
T Consensus 321 viNKiDl~~-~~~------------------~~~~~i~~el~~~l~~~~g~~~----------~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 321 SVNKLDLMS-WSE------------------DRFQEIKNIVSDFLIKMVGFKT----------SNVHFVPISAISGTNLI 371 (592)
T ss_dssp EEECGGGGT-TCH------------------HHHHHHHHHHHHHHTTTSCCCG----------GGEEEEEECSSSCSSSC
T ss_pred EEECCCCCC-CCH------------------HHHHHHHHHHHHHHHHHHCCCC----------CCEEEEEEECCCCCCCC
T ss_conf 996346655-437------------------8999999999999987508886----------62489997545575433
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEE
Q ss_conf --------------479999999999899863114555017999999818504899999920652798898716789606
Q 000626 994 --------------DLLLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIV 1059 (1384)
Q Consensus 994 --------------eLl~~L~~l~~~~l~e~L~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~ 1059 (1384)
.|+..|..+.+ .......+++++|.+++.+ |.|++++|+|.+|+|+.||.|++++.+ .
T Consensus 372 e~~~~~~~~w~~g~~Lle~l~~~~p----p~~~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~--~- 443 (592)
T 3mca_A 372 QKDSSDLYKWYKGPTLLSALDQLVP----PEKPYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ--E- 443 (592)
T ss_dssp SCCCCGGGGTCCSCCHHHHHHTSCC----CSCTTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTT--E-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCC--C-
T ss_conf 4543221223540789999975206----5555555600124689955-982999999941367369889991699--4-
Q ss_pred EEEEECCCCCCCCCCEECEEEECHHHHC-CC-CC--CEEECCCCCCCCCCCCEEEECCC
Q ss_conf 7765303898883110010221001010-12-46--05501565323579944992998
Q 000626 1060 TTIRALLTPHPMKELRVKGTYLHHKQIK-AA-QG--IKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1060 t~Ir~ll~p~p~~e~rvk~~~~~~k~V~-aa-~g--vki~~~gL~~a~aG~~l~v~~~~ 1114 (1384)
..+|+++++++..+. .| +| +.+.+.|+....+..+.+++.+.
T Consensus 444 -------------~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 444 -------------DAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp -------------EEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred -------------EEEEEEEEECCCCCCCEECCCCEEEEEECCCCCCCCCEEEEECCCC
T ss_conf -------------6899999975845763406898899997253002331378852699
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=285.42 Aligned_cols=257 Identities=23% Similarity=0.361 Sum_probs=190.7
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-------CCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCEE
Q ss_conf 0016899889999289999779999998396-------345555751375203681033210000000134345779789
Q 000626 788 AEENLRSPICCIMGHVDTGKTKLLDCIRGTN-------VQEGEAGGITQQIGATYFPAENIRERTRELKANATLKVPGLL 860 (1384)
Q Consensus 788 s~~~~R~piV~IlGhvdsGKTTLLd~L~~t~-------v~~geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~~i~ 860 (1384)
....+++++|+|+||+|||||||+++|++.. ......+|||++++..++.+.. ..++
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------------~~i~ 76 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN----------------YRIT 76 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT----------------EEEE
T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEECC----------------EEEE
T ss_conf 443389889999999998299999999788764112555223357617830569999899----------------7999
Q ss_pred EEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99199983116788710366661399861468997888999999871299369999312443476458881389999976
Q 000626 861 VIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQ 940 (1384)
Q Consensus 861 iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q 940 (1384)
|||||||++|..++.++++.+|++|||||+++|+++||.+++.++..+++|+||++||||++. ..
T Consensus 77 iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~-------~~-------- 141 (482)
T 1wb1_A 77 LVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG-------TE-------- 141 (482)
T ss_dssp ECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC-------HH--------
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CH--------
T ss_conf 998988699999999888449999999956878657789999999984998899997877322-------01--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 4999999999999999999980-782133201247898314994787679891147999999999989986311455501
Q 000626 941 NTDVQNEFNMRLVQIVTQLKEQ-GMNTELYYKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTFRNELQC 1019 (1384)
Q Consensus 941 ~~~i~~ef~~~i~~I~~~L~~~-Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e~L~~~~~~~~ 1019 (1384)
.+......+...+... ++. .+++|++||++|.||.+|+.+|..+++.+.. ......++++
T Consensus 142 ------~~~~~~~~l~~~l~~~~~~~------------~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~-~~~~~~~~~~ 202 (482)
T 1wb1_A 142 ------EIKRTEMIMKSILQSTHNLK------------NSSIIPISAKTGFGVDELKNLIITTLNNAEI-IRNTESYFKM 202 (482)
T ss_dssp ------HHHHHHHHHHHHHHHSSSGG------------GCCEEECCTTTCTTHHHHHHHHHHHHHHSCC-CCCSSSCCBC
T ss_pred ------HHHHHHHHHHHHHHHHCCCC------------CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCC
T ss_conf ------58999999999986413555------------6319998776798879999999876127644-5652125553
Q ss_pred EEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCC---CCCCEEEC
Q ss_conf 799999981850489999992065279889871678960677653038988831100102210010101---24605501
Q 000626 1020 TVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA---AQGIKITA 1096 (1384)
Q Consensus 1020 ~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~a---a~gvki~~ 1096 (1384)
+|..++.+.|.|++++++|.+|+|+.||.|++++.+ ...+ |+++++++..+.. ++.+.+.+
T Consensus 203 ~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~--------------V~~i~~~~~~v~~a~~G~~v~~~l 266 (482)
T 1wb1_A 203 PLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPIN--MSTK--------------VRSIQYFKESVMEAKAGDRVGMAI 266 (482)
T ss_dssp BCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTC--CCEE--------------ECCBCGGGSCBCCCCSSCCCCEEC
T ss_pred CCEEEEEECCCCEEEEEEEEEEEEEECCEEEECCCC--CEEE--------------EEEEEECCEEEEEECCCCEEEEEE
T ss_conf 111589964883499999987699609999999999--6899--------------929999990850725999899996
Q ss_pred CCCCCCCCCCCEEE
Q ss_conf 56532357994499
Q 000626 1097 QGLEHAIAGTGLYV 1110 (1384)
Q Consensus 1097 ~gL~~a~aG~~l~v 1110 (1384)
.|++......+.++
T Consensus 267 ~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 267 QGVDAKQIYRGXIL 280 (482)
T ss_dssp SSCCSSCCCSSCBC
T ss_pred CCCCHHHCCCCCEE
T ss_conf 69978631565267
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=285.36 Aligned_cols=258 Identities=20% Similarity=0.230 Sum_probs=176.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-CCCCCHHHCCC---CCCCCCCCEEEEECCC
Q ss_conf 6899889999289999779999998396345555751375203681033-21000000013---4345779789991999
Q 000626 791 NLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAE-NIRERTRELKA---NATLKVPGLLVIDTPG 866 (1384)
Q Consensus 791 ~~R~piV~IlGhvdsGKTTLLd~L~~t~v~~geagGITq~iga~~~~~~-~i~~~~~~i~~---~~~~~~~~i~iIDTPG 866 (1384)
++|| |+|+||+|||||||+++|++..-...+.|.+. -+.++..+. ..++|++++.. .+.|+...||||||||
T Consensus 1 kIRN--i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~--~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIIN--IGVLAHVDAGKTTLTESLLYNSGAITELGSVD--KGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCC--CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC--CSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCC
T ss_pred CEEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCC
T ss_conf 9569--99994899998999999999749975153212--6874568848898679768952599998998999997988
Q ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 8311678871036666139986146899788899999987129936999931244347645888138999997649999-
Q 000626 867 HESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQ- 945 (1384)
Q Consensus 867 He~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~- 945 (1384)
|.+|+..+.|+++.||+||||||+.+|+++||..+|+++..+++|+|++|||||++ .+++...+......+.
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~-------~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN-------GIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS-------SCCSHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------CCCHHHHHHHHHHHHCC
T ss_conf 17889999999998598999996898974789999999997599828998423545-------68999999999998678
Q ss_pred -------------------------HHHHHHHHHHHHH-HHHCCCCHHHHHC----CCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf -------------------------9999999999999-9980782133201----247898314994787679891147
Q 000626 946 -------------------------NEFNMRLVQIVTQ-LKEQGMNTELYYK----NKDRGETFNIVPTSAISGEGIPDL 995 (1384)
Q Consensus 946 -------------------------~ef~~~i~~I~~~-L~~~Gl~~e~~~~----~~~~g~~v~iVpvSA~TGeGI~eL 995 (1384)
..+-.....+... +....+....... ....+..+|+++.||++|.||..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 73214315763342111221566644554066778765306775666778888766402452146323434258783427
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEE
Q ss_conf 9999999999899863114555017999999818504899999920652798898716789606776
Q 000626 996 LLLLVQWTQKTMVEKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTI 1062 (1384)
Q Consensus 996 l~~L~~l~~~~l~e~L~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~I 1062 (1384)
|..++.+++.+.. ....++.+.|+.+.+.+.+|.++.++|++|+|+.|+.|.+.......++++
T Consensus 230 Ld~i~~~~p~p~~---~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l 293 (638)
T 3j25_A 230 IEVITNKFYSSTH---RGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEM 293 (638)
T ss_dssp HHHHHHSCCCSGG---GSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCC
T ss_pred HHHHHCCCCCCCC---CHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 6543203667510---001111214555442115855999999738633787443456753168753
No 8
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=283.47 Aligned_cols=263 Identities=23% Similarity=0.362 Sum_probs=188.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CCCCCCCEEEEEEEEEECCCCC
Q ss_conf 998899992899997799999983963-------------------------------4555575137520368103321
Q 000626 793 RSPICCIMGHVDTGKTKLLDCIRGTNV-------------------------------QEGEAGGITQQIGATYFPAENI 841 (1384)
Q Consensus 793 R~piV~IlGhvdsGKTTLLd~L~~t~v-------------------------------~~geagGITq~iga~~~~~~~i 841 (1384)
..+.|+|+||+|+|||||+++|++... +.....|||++++..++.+..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCC-
T ss_conf 6239999938999989999999987399766788888888875066622245543365567606943987589996198-
Q ss_pred CCCHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EE
Q ss_conf 000000013434577978999199983116788710366661399861468997-------8889999998712993-69
Q 000626 842 RERTRELKANATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLE-------PQTIESLNLLKMRNTE-FI 913 (1384)
Q Consensus 842 ~~~~~~i~~~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~-------~QT~E~l~ll~~~~vP-~I 913 (1384)
..|+|||||||+.|..++.++++.+|++|||||+++|++ +||++++.++..+++| +|
T Consensus 95 ---------------~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 95 ---------------KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred ---------------EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf ---------------57999989970788999985485689999999899784114567774389999999984998489
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 99931244347645888138999997649999999999999999999807821332012478983149947876798911
Q 000626 914 VALNKVDRLYGWKTCRNAPIVKAIKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISGEGIP 993 (1384)
Q Consensus 914 VviNKiDl~~~w~~~~~a~~~~~l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TGeGI~ 993 (1384)
|++||||++. .++. ...+......+...+...|++.. ..+++||+||++|.||.
T Consensus 160 vviNK~Dl~~-------~~~~----------~~~~~~i~~~~~~~l~~~g~~~~---------~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 160 VLINKMDDPT-------VNWS----------NERYEECKEKLVPFLKKVGFNPK---------KDIHFMPCSGLTGANLK 213 (439)
T ss_pred EEEECCCCCC-------CCHH----------HHHHHHHHHHHHHHHHHHCCCCC---------CCEEEEEEECCCCCCCC
T ss_conf 9753478766-------2257----------99999999999999987423545---------77059996435775531
Q ss_pred HHHHHHHHHHHHHHHHHH--------HCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEEC
Q ss_conf 479999999999899863--------114555017999999818504899999920652798898716789606776530
Q 000626 994 DLLLLLVQWTQKTMVEKL--------TFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRAL 1065 (1384)
Q Consensus 994 eLl~~L~~l~~~~l~e~L--------~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~l 1065 (1384)
+++..+.|+....+.+.| ....++++.|.+++ .|.|+++.|+|.+|+|+.||.|++++++
T Consensus 214 ~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~---------- 281 (439)
T 3j2k_7 214 EQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNK---------- 281 (439)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCC----------
T ss_conf 1233454467267999997478976677787289999897--4997599999973479549999973589----------
Q ss_pred CCCCCCCCCEECEEEECHHHHCCC---CCCEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 389888311001022100101012---46055015653235799449929986
Q 000626 1066 LTPHPMKELRVKGTYLHHKQIKAA---QGIKITAQGLEHAIAGTGLYVVGPDD 1115 (1384)
Q Consensus 1066 l~p~p~~e~rvk~~~~~~k~V~aa---~gvki~~~gL~~a~aG~~l~v~~~~~ 1115 (1384)
...+|+++++++..+..| +.+.+.+.|+.......+.+++.++.
T Consensus 282 ------~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~ 328 (439)
T 3j2k_7 282 ------HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN 328 (439)
T ss_pred ------CEEEEEEEEECCEECCEECCCCCCEEEEECCCHHHCCCCEEECCCCC
T ss_conf ------45788999778807377328985468992355643487087327999
No 9
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=282.85 Aligned_cols=290 Identities=21% Similarity=0.212 Sum_probs=193.0
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCC--------CCC----------CCCCCEEEEEEEEEECCCCCCCCHHHCCC
Q ss_conf 016899889999289999779999998396--------345----------55575137520368103321000000013
Q 000626 789 EENLRSPICCIMGHVDTGKTKLLDCIRGTN--------VQE----------GEAGGITQQIGATYFPAENIRERTRELKA 850 (1384)
Q Consensus 789 ~~~~R~piV~IlGhvdsGKTTLLd~L~~t~--------v~~----------geagGITq~iga~~~~~~~i~~~~~~i~~ 850 (1384)
.+++|| |||+||+|||||||+++|+..+ +.. ...+|||+...+..+.|....
T Consensus 10 ~~~IRN--i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~-------- 79 (709)
T 4fn5_A 10 INRYRN--IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR-------- 79 (709)
T ss_dssp GGGEEE--EEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT--------
T ss_pred HHHCEE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCC--------
T ss_conf 687729--9999489999899999999962998757604389756798499997497297603899961676--------
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 43457797899919998311678871036666139986146899788899999987129936999931244347645888
Q 000626 851 NATLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRN 930 (1384)
Q Consensus 851 ~~~~~~~~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP~IVviNKiDl~~~w~~~~~ 930 (1384)
..++.+.|||||||||.+|+..+.|+++.||+||||||+..|+++||...|+++..+++|+|++|||||+. .
T Consensus 80 -~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~-------~ 151 (709)
T 4fn5_A 80 -GQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ-------G 151 (709)
T ss_dssp -SCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST-------T
T ss_pred -CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-------C
T ss_conf -77887799999398976408999999987485899997998975638999999997599869997166666-------7
Q ss_pred CHHHHHHHHHHHHHH---------------------------------------------HHHHHHH----HH-------
Q ss_conf 138999997649999---------------------------------------------9999999----99-------
Q 000626 931 APIVKAIKQQNTDVQ---------------------------------------------NEFNMRL----VQ------- 954 (1384)
Q Consensus 931 a~~~~~l~~q~~~i~---------------------------------------------~ef~~~i----~~------- 954 (1384)
+++...+......+. ..+.... ..
T Consensus 152 a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 231 (709)
T 4fn5_A 152 ANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAE 231 (709)
T ss_dssp CCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66899987762204562255543557300155389875106788404457863101346378888899998878988774
Q ss_pred ----HHHHHHHC-CCCHHHH----HCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH----------------
Q ss_conf ----99999980-7821332----0124789831499478767989114799999999998998----------------
Q 000626 955 ----IVTQLKEQ-GMNTELY----YKNKDRGETFNIVPTSAISGEGIPDLLLLLVQWTQKTMVE---------------- 1009 (1384)
Q Consensus 955 ----I~~~L~~~-Gl~~e~~----~~~~~~g~~v~iVpvSA~TGeGI~eLl~~L~~l~~~~l~e---------------- 1009 (1384)
+...+.+. .+..... ......+..+|++..||+++.|++.||+.++.+++.+..-
T Consensus 232 ~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 311 (709)
T 4fn5_A 232 ANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDE 311 (709)
T ss_dssp SSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCE
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44999999874477627777778888654002455044004467766888887886079975444301337765432222
Q ss_pred -HHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCC-EEEEEEECCCCCCCCCCEECEEEECHHHHC
Q ss_conf -631145550179999998185048999999206527988987167896-067765303898883110010221001010
Q 000626 1010 -KLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGP-IVTTIRALLTPHPMKELRVKGTYLHHKQIK 1087 (1384)
Q Consensus 1010 -~L~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~-i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~ 1087 (1384)
..+...|+.+.|+.+.+.+..|.+..++|++|+|+.|+.|.....+.. .+.++..+.... ...|.
T Consensus 312 ~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~-------------~~~v~ 378 (709)
T 4fn5_A 312 RHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQ-------------REEIK 378 (709)
T ss_dssp ECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSC-------------CCEES
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCEEEEECCE-------------EEEEE
T ss_conf 35786676157999950356777057773258988889999972399577503406763010-------------14820
Q ss_pred C-CCCCEEECCCCCCCCCCCCEE
Q ss_conf 1-246055015653235799449
Q 000626 1088 A-AQGIKITAQGLEHAIAGTGLY 1109 (1384)
Q Consensus 1088 a-a~gvki~~~gL~~a~aG~~l~ 1109 (1384)
. .+|..+++.||..+..|+++.
T Consensus 379 ~~~aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 379 EVRAGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp EECTTCEEEECSCSSCCTTCEEE
T ss_pred EECCCCEEEECCCCCCCCCCEEC
T ss_conf 66378701463887676388756
No 10
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=1.00 E-value=1 Score=282.31 Aligned_cols=258 Identities=22% Similarity=0.328 Sum_probs=179.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC----------------CCCCCEEEEEEEEEECCCCCCCCHHHCCCCCCCCCC
Q ss_conf 9889999289999779999998396345----------------555751375203681033210000000134345779
Q 000626 794 SPICCIMGHVDTGKTKLLDCIRGTNVQE----------------GEAGGITQQIGATYFPAENIRERTRELKANATLKVP 857 (1384)
Q Consensus 794 ~piV~IlGhvdsGKTTLLd~L~~t~v~~----------------geagGITq~iga~~~~~~~i~~~~~~i~~~~~~~~~ 857 (1384)
.++|+|+||+|||||||+++|++..... ....|||+.+....+.. ...
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~----------------~~~ 359 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT----------------PTR 359 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC----------------SSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECC----------------CCE
T ss_conf 0489998289988999999998640235643233322356642132375368888999747----------------987
Q ss_pred CEEEEECCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 789991999831167887103666613998614689978889999998712993-6999931244347645888138999
Q 000626 858 GLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTE-FIVALNKVDRLYGWKTCRNAPIVKA 936 (1384)
Q Consensus 858 ~i~iIDTPGHe~F~~~r~rg~~~aDiaILVVDa~~Gv~~QT~E~l~ll~~~~vP-~IVviNKiDl~~~w~~~~~a~~~~~ 936 (1384)
.++|||||||++|..++.++++.+|++|||||+++|+++||.++|.++...++| +||++||||++. ....
T Consensus 360 kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~------d~e~--- 430 (1289)
T 3avx_A 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD------DEEL--- 430 (1289)
T ss_dssp EEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC------CHHH---
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CHHH---
T ss_conf 9999989883999999999884399999998187667588999999998759986999985145421------0346---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEEECCCCCC--------CCHHHHHHHHHHHHHHHHH
Q ss_conf 99764999999999999999999980782133201247898314994787679--------8911479999999999899
Q 000626 937 IKQQNTDVQNEFNMRLVQIVTQLKEQGMNTELYYKNKDRGETFNIVPTSAISG--------EGIPDLLLLLVQWTQKTMV 1008 (1384)
Q Consensus 937 l~~q~~~i~~ef~~~i~~I~~~L~~~Gl~~e~~~~~~~~g~~v~iVpvSA~TG--------eGI~eLl~~L~~l~~~~l~ 1008 (1384)
+......+...+...|+. +..+++|++||++| .||..|+..|..+++.+.
T Consensus 431 -----------le~i~eEi~elLk~~G~~----------~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~- 488 (1289)
T 3avx_A 431 -----------LELVEMEVRELLSQYDFP----------GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE- 488 (1289)
T ss_dssp -----------HHHHHHHHHHHHHHTTSC----------TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC-
T ss_pred -----------HHHHHHHHHHHHHHCCCC----------CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC-
T ss_conf -----------899999999999851346----------6631599987224777786300363466767765368875-
Q ss_pred HHHHCCCCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCEEEEEEECCCCCCCCCCEECEEEECHHHHCC
Q ss_conf 86311455501799999981850489999992065279889871678960677653038988831100102210010101
Q 000626 1009 EKLTFRNELQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGLQGPIVTTIRALLTPHPMKELRVKGTYLHHKQIKA 1088 (1384)
Q Consensus 1009 e~L~~~~~~~~~VlEvk~i~G~G~vv~~iV~~G~Lk~GD~Ivv~g~~g~i~t~Ir~ll~p~p~~e~rvk~~~~~~k~V~a 1088 (1384)
.....+++++|..++.++|+|++++|+|.+|+|+.||.|+++|.+++..++|+++ ++++..+..
T Consensus 489 --r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI--------------~~~~~~v~e 552 (1289)
T 3avx_A 489 --RAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGV--------------EMFRKLLDE 552 (1289)
T ss_dssp --CGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEE--------------ECSSCEESE
T ss_pred --CCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCCEEEEEEEE--------------EECCCEEEE
T ss_conf --4421210330000001258867999999663896198899936899636999788--------------636924538
Q ss_pred ---CCCCEEECCCCCCCCCCCCEEEECCC
Q ss_conf ---24605501565323579944992998
Q 000626 1089 ---AQGIKITAQGLEHAIAGTGLYVVGPD 1114 (1384)
Q Consensus 1089 ---a~gvki~~~gL~~a~aG~~l~v~~~~ 1114 (1384)
++.+.+.+.|+.......+.+++.+.
T Consensus 553 A~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 553 GRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EECCCCCEEEEEECCHHCCCCCCEEECCC
T ss_conf 72687423676401051188625896599
Done!