Query 000627
Match_columns 1383
No_of_seqs 600 out of 1697
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 20:55:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08429 PLU-1: PLU-1-like pro 100.0 5.2E-40 1.1E-44 386.4 34.3 317 261-587 1-333 (335)
2 PF08429 PLU-1: PLU-1-like pro 100.0 5.1E-37 1.1E-41 361.1 33.1 308 418-738 2-335 (335)
3 KOG1246 DNA-binding protein ju 100.0 3.9E-32 8.4E-37 354.8 5.3 215 1-220 380-599 (904)
4 KOG0958 DNA damage-responsive 99.8 3.3E-22 7.2E-27 238.9 2.9 83 1-83 224-306 (690)
5 PF02928 zf-C5HC2: C5HC2 zinc 99.5 6E-15 1.3E-19 127.0 4.4 54 162-215 1-54 (54)
6 PF02373 JmjC: JmjC domain, hy 99.4 1.2E-13 2.5E-18 137.3 3.2 61 9-69 54-114 (114)
7 COG5034 TNG2 Chromatin remodel 99.1 5.3E-11 1.1E-15 128.8 3.6 50 1237-1287 216-269 (271)
8 KOG1973 Chromatin remodeling p 99.0 1.4E-10 3.1E-15 132.6 3.3 54 1236-1290 213-270 (274)
9 KOG4323 Polycomb-like PHD Zn-f 98.6 1.9E-08 4.2E-13 119.4 3.9 51 1242-1292 171-228 (464)
10 PF00628 PHD: PHD-finger; Int 98.5 1.6E-08 3.5E-13 86.3 -0.4 44 1244-1287 1-50 (51)
11 smart00249 PHD PHD zinc finger 98.2 5.4E-07 1.2E-11 74.6 2.6 42 1244-1285 1-47 (47)
12 PF00628 PHD: PHD-finger; Int 98.2 2.8E-07 6.1E-12 78.6 0.9 48 986-1033 1-49 (51)
13 KOG1632 Uncharacterized PHD Zn 98.0 6.2E-07 1.4E-11 105.7 -3.0 58 986-1043 62-121 (345)
14 smart00249 PHD PHD zinc finger 98.0 5.1E-06 1.1E-10 68.7 3.2 47 986-1032 1-47 (47)
15 KOG1512 PHD Zn-finger protein 97.7 1.2E-05 2.7E-10 88.4 1.2 45 1246-1290 319-365 (381)
16 KOG1973 Chromatin remodeling p 97.7 1.7E-05 3.8E-10 91.2 1.8 50 979-1033 214-266 (274)
17 KOG4443 Putative transcription 96.8 0.00022 4.8E-09 87.2 -0.7 64 985-1051 19-84 (694)
18 KOG4323 Polycomb-like PHD Zn-f 96.5 0.00077 1.7E-08 81.0 0.8 47 987-1033 171-222 (464)
19 KOG1632 Uncharacterized PHD Zn 96.1 0.0014 3E-08 77.8 -0.0 53 1241-1293 59-118 (345)
20 KOG2752 Uncharacterized conser 96.1 0.0037 8.1E-08 70.8 3.0 32 1242-1273 128-166 (345)
21 KOG4299 PHD Zn-finger protein 96.0 0.004 8.8E-08 76.6 2.8 45 1243-1287 254-304 (613)
22 KOG0955 PHD finger protein BR1 95.8 0.0032 6.9E-08 82.8 1.0 72 980-1054 215-293 (1051)
23 KOG1512 PHD Zn-finger protein 95.7 0.0047 1E-07 68.7 1.7 50 981-1033 311-361 (381)
24 KOG0825 PHD Zn-finger protein 95.5 0.0055 1.2E-07 75.9 1.7 50 986-1036 217-267 (1134)
25 KOG1244 Predicted transcriptio 95.5 0.006 1.3E-07 67.6 1.5 50 983-1033 280-329 (336)
26 PF13831 PHD_2: PHD-finger; PD 95.0 0.0054 1.2E-07 48.7 -0.4 33 1254-1286 2-36 (36)
27 KOG1844 PHD Zn-finger proteins 94.8 0.016 3.5E-07 72.9 2.9 54 1240-1293 84-140 (508)
28 KOG0825 PHD Zn-finger protein 94.5 0.019 4.2E-07 71.4 2.3 47 1242-1288 215-266 (1134)
29 KOG0957 PHD finger protein [Ge 94.5 0.017 3.8E-07 68.6 1.8 53 987-1039 547-602 (707)
30 KOG4299 PHD Zn-finger protein 94.3 0.022 4.7E-07 70.4 2.2 52 984-1035 253-305 (613)
31 KOG0954 PHD finger protein [Ge 94.2 0.03 6.4E-07 69.7 3.1 69 983-1054 270-343 (893)
32 COG5034 TNG2 Chromatin remodel 94.1 0.027 5.9E-07 62.5 2.2 48 981-1033 218-268 (271)
33 KOG0954 PHD finger protein [Ge 93.7 0.037 8E-07 68.9 2.6 47 1241-1287 270-320 (893)
34 KOG0955 PHD finger protein BR1 92.2 0.11 2.3E-06 69.1 3.7 55 1238-1292 216-273 (1051)
35 PF13831 PHD_2: PHD-finger; PD 91.6 0.033 7.1E-07 44.3 -1.1 35 997-1033 2-36 (36)
36 KOG0994 Extracellular matrix g 91.4 60 0.0013 43.8 26.0 27 28-54 1135-1161(1758)
37 KOG0957 PHD finger protein [Ge 90.9 0.15 3.2E-06 61.1 2.7 48 1242-1289 120-180 (707)
38 KOG1244 Predicted transcriptio 89.7 0.18 3.9E-06 56.4 1.9 44 1244-1287 283-330 (336)
39 KOG1245 Chromatin remodeling c 87.8 0.15 3.3E-06 70.2 -0.2 55 981-1036 1105-1159(1404)
40 cd04718 BAH_plant_2 BAH, or Br 87.2 0.44 9.6E-06 49.7 2.8 33 1008-1041 1-33 (148)
41 KOG0383 Predicted helicase [Ge 87.2 0.24 5.2E-06 63.5 1.0 52 981-1036 44-95 (696)
42 KOG0994 Extracellular matrix g 87.1 1.3E+02 0.0029 40.8 27.0 45 482-526 1489-1535(1758)
43 KOG1245 Chromatin remodeling c 86.3 0.15 3.3E-06 70.2 -1.5 51 1240-1290 1106-1160(1404)
44 COG5141 PHD zinc finger-contai 83.4 0.51 1.1E-05 56.7 1.3 51 984-1037 193-245 (669)
45 PF15446 zf-PHD-like: PHD/FYVE 82.5 2 4.3E-05 45.6 5.0 47 987-1033 2-58 (175)
46 KOG0956 PHD finger protein AF1 81.7 0.94 2E-05 56.6 2.6 46 1242-1287 6-56 (900)
47 PF07227 DUF1423: Protein of u 78.2 3 6.5E-05 50.7 5.3 35 888-922 22-56 (446)
48 KOG1829 Uncharacterized conser 76.0 3.7 8.1E-05 51.9 5.5 31 1254-1288 529-559 (580)
49 KOG0383 Predicted helicase [Ge 74.1 1.3 2.8E-05 57.0 0.9 41 1244-1287 50-93 (696)
50 PF13901 DUF4206: Domain of un 70.8 4.2 9E-05 45.2 3.8 67 954-1033 124-196 (202)
51 PF14446 Prok-RING_1: Prokaryo 70.5 2.4 5.3E-05 36.9 1.4 34 983-1016 4-38 (54)
52 PF07227 DUF1423: Protein of u 69.5 3.6 7.8E-05 50.1 3.1 46 1244-1290 131-194 (446)
53 COG5141 PHD zinc finger-contai 67.8 2.1 4.5E-05 51.7 0.7 45 1246-1290 198-245 (669)
54 COG5415 Predicted integral mem 65.7 5 0.00011 43.8 2.9 36 1254-1291 190-226 (251)
55 KOG2626 Histone H3 (Lys4) meth 60.5 6.3 0.00014 48.7 2.8 49 1240-1288 18-76 (544)
56 KOG4443 Putative transcription 59.0 5.1 0.00011 50.5 1.8 55 981-1036 65-119 (694)
57 PF13639 zf-RING_2: Ring finge 58.8 1.8 3.9E-05 35.7 -1.5 42 986-1033 2-44 (44)
58 KOG1246 DNA-binding protein ju 58.5 4.4 9.5E-05 54.9 1.2 174 708-902 704-893 (904)
59 KOG1844 PHD Zn-finger proteins 55.6 5.6 0.00012 50.3 1.5 51 983-1036 85-136 (508)
60 KOG1829 Uncharacterized conser 54.4 6 0.00013 50.1 1.4 49 979-1035 505-559 (580)
61 KOG0956 PHD finger protein AF1 52.9 6.6 0.00014 49.5 1.4 44 987-1033 8-55 (900)
62 cd04718 BAH_plant_2 BAH, or Br 52.3 11 0.00024 39.7 2.7 28 1266-1293 2-32 (148)
63 KOG2114 Vacuolar assembly/sort 51.2 22 0.00047 46.5 5.5 126 835-1033 754-879 (933)
64 COG1340 Uncharacterized archae 49.9 2.9E+02 0.0063 32.6 13.7 129 387-525 90-220 (294)
65 PF12678 zf-rbx1: RING-H2 zinc 44.9 8.6 0.00019 35.6 0.5 43 986-1033 21-73 (73)
66 PF11793 FANCL_C: FANCL C-term 44.7 10 0.00023 34.8 1.0 49 985-1033 3-62 (70)
67 KOG4628 Predicted E3 ubiquitin 44.7 16 0.00034 43.7 2.7 45 985-1033 230-274 (348)
68 PHA02929 N1R/p28-like protein; 43.6 29 0.00063 39.6 4.5 47 982-1033 172-223 (238)
69 PF15446 zf-PHD-like: PHD/FYVE 42.0 36 0.00078 36.5 4.5 38 1254-1291 15-63 (175)
70 smart00154 ZnF_AN1 AN1-like Zi 41.2 14 0.0003 30.1 1.1 26 162-189 1-27 (39)
71 KOG2910 Uncharacterized conser 41.0 5.4E+02 0.012 28.5 13.2 44 504-547 121-164 (209)
72 PF06008 Laminin_I: Laminin Do 39.9 3.1E+02 0.0068 31.7 12.4 39 362-400 54-93 (264)
73 PRK03564 formate dehydrogenase 39.8 1.9E+02 0.0041 34.4 10.5 32 981-1012 184-225 (309)
74 KOG1886 BAH domain proteins [T 36.4 48 0.001 41.1 5.0 53 1236-1288 165-218 (464)
75 PF13341 RAG2_PHD: RAG2 PHD do 36.0 25 0.00053 32.1 1.9 32 1255-1286 29-69 (78)
76 PF07496 zf-CW: CW-type Zinc F 33.8 26 0.00056 30.1 1.7 30 1255-1285 2-35 (50)
77 KOG4628 Predicted E3 ubiquitin 33.7 79 0.0017 38.0 6.2 48 1242-1289 230-277 (348)
78 PF13771 zf-HC5HC2H: PHD-like 33.3 18 0.00039 34.4 0.7 30 1244-1275 39-70 (90)
79 PF13922 PHD_3: PHD domain of 32.7 7.6 0.00016 34.9 -1.7 30 1242-1275 33-62 (69)
80 KOG2752 Uncharacterized conser 32.4 31 0.00066 40.3 2.4 52 1242-1293 53-106 (345)
81 PF07649 C1_3: C1-like domain; 32.3 15 0.00032 28.0 -0.1 29 986-1014 2-30 (30)
82 TIGR01562 FdhE formate dehydro 31.5 2.6E+02 0.0057 33.2 9.9 31 982-1012 182-223 (305)
83 PF13721 SecD-TM1: SecD export 31.4 40 0.00086 33.4 2.8 49 4-52 23-79 (101)
84 PF13832 zf-HC5HC2H_2: PHD-zin 30.8 21 0.00045 35.5 0.7 30 1242-1273 56-87 (110)
85 PF13922 PHD_3: PHD domain of 30.1 12 0.00026 33.7 -1.0 22 996-1017 40-61 (69)
86 PF13901 DUF4206: Domain of un 29.3 1.7E+02 0.0038 32.6 7.7 39 1244-1288 154-198 (202)
87 COG5243 HRD1 HRD ubiquitin lig 29.3 37 0.0008 40.3 2.4 48 981-1033 284-341 (491)
88 PLN03208 E3 ubiquitin-protein 29.1 36 0.00079 37.5 2.2 50 1238-1290 14-79 (193)
89 PF08580 KAR9: Yeast cortical 26.3 6E+02 0.013 33.8 12.8 32 497-528 24-55 (683)
90 PF10367 Vps39_2: Vacuolar sor 26.1 1.4E+02 0.0031 29.0 5.7 32 983-1015 77-108 (109)
91 cd00162 RING RING-finger (Real 25.5 19 0.00042 28.6 -0.5 41 987-1033 2-42 (45)
92 PF13832 zf-HC5HC2H_2: PHD-zin 24.8 36 0.00078 33.8 1.2 31 983-1015 54-86 (110)
93 PF07649 C1_3: C1-like domain; 24.5 26 0.00056 26.6 0.1 26 1246-1271 5-30 (30)
94 PF10497 zf-4CXXC_R1: Zinc-fin 24.3 34 0.00075 34.1 0.9 55 981-1036 4-71 (105)
95 COG5415 Predicted integral mem 24.0 66 0.0014 35.6 3.0 36 996-1036 189-224 (251)
96 cd00350 rubredoxin_like Rubred 22.6 50 0.0011 25.8 1.3 23 1001-1034 3-25 (33)
97 KOG2846 Predicted membrane pro 21.7 1E+02 0.0022 36.6 4.2 39 1253-1293 217-256 (328)
98 PF06160 EzrA: Septation ring 21.4 1.8E+03 0.04 28.5 31.2 54 690-743 451-509 (560)
99 PHA03247 large tegument protei 20.9 3.4E+03 0.073 31.4 27.1 107 311-446 1318-1436(3151)
100 PF12861 zf-Apc11: Anaphase-pr 20.4 41 0.0009 32.2 0.6 40 990-1033 38-78 (85)
No 1
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=5.2e-40 Score=386.43 Aligned_cols=317 Identities=24% Similarity=0.383 Sum_probs=289.8
Q ss_pred HHHHHhHHHhhc--cCCChhHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCC-----C
Q 000627 261 EQWLSCSLKVLQ--GLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPG-----S 333 (1383)
Q Consensus 261 e~W~~k~~~iL~--~~~~l~~l~~LL~EaE~~~~~~~~~~~lr~l~~~l~ea~~W~e~a~~c~s~~q~~~~~~~-----~ 333 (1383)
+.|.++|+++|. ..++++.|++||+|||+++||.+ ++|+.|+..|.+|+.|++.|+.+++++++.+++.. +
T Consensus 1 d~W~~k~~~~l~~~~k~~L~~l~~Ll~e~e~~~~~~~--~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~ 78 (335)
T PF08429_consen 1 DTWAEKVKEALEESPKPSLKELRSLLSEGEKIPFPLP--ELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQK 78 (335)
T ss_pred ChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccccc
Confidence 479999999994 45689999999999999999997 55677777899999999999999999998766542 3
Q ss_pred CCccccHHHHhhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhhcCCCccccchHHHH
Q 000627 334 DSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEINAALSA--CSKISELELLYSRASGLPICIVESEKLS 410 (1383)
Q Consensus 334 ~~~kl~l~eL~~ll~-~~~lpc~~pe~~~Lkel~~~~e~~~~e~~~~L~~--~~~~~eLe~Ll~~g~~f~V~lpEl~kLk 410 (1383)
+..++++++|+.|++ +.+|||++||+.+|+++++.+++|+.+|+.+|+. ..++++++.||++|++|+|++||+..|+
T Consensus 79 ~~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~ 158 (335)
T PF08429_consen 79 SRNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLR 158 (335)
T ss_pred ccccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHH
Confidence 578899999999999 9999999999999999999999999999999986 4679999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhhccCCCcccHHHHHHHHHHhhhcCCCCCch----hHHHHHHHHHHHHHHHHHHHhc-CCCCHH
Q 000627 411 QRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET----DMLLKMIGQAESCRARCSEALR-GSMSLK 485 (1383)
Q Consensus 411 ~rl~~~~~W~~~v~~~L~~~~~~~~tLeeLr~Ll~ea~~l~v~~Pe~----d~L~ell~~aE~we~kA~~lL~-~~~tl~ 485 (1383)
+++++.+ |+++++.++.. +..++|++++.|+++|..+++ |.. ..|+++++.|+.|+++|+.+|. ..++++
T Consensus 159 ~~l~~~~-W~~~~~~~~~~--~~~~tL~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~ 233 (335)
T PF08429_consen 159 RRLEQLE-WLEEAREILSD--PDRLTLDELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLE 233 (335)
T ss_pred HHHHHHH-HHHHHHHHhcc--ccCCcHHHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 9999998 99999999754 225899999999999999974 444 4778889999999999999999 579999
Q ss_pred HHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhccCCcCCCChhhHHHHH
Q 000627 486 TVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVEL 565 (1383)
Q Consensus 486 eLe~ll~e~~~lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~~~~~~~~~~p~l~eL~~Ll~~g~~L~V~lpel~~LE~~l 565 (1383)
+|++|++++.+|||++|.+..|++++.+|++|+++++.++.. .++.+|+++++++|+.+|..|+|.++++++||..+
T Consensus 234 ~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~ 310 (335)
T PF08429_consen 234 QLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELVAESEELPVKLEELSDLEKQL 310 (335)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999852 24789999999999999999999999999999999
Q ss_pred HHhH-HHHHHHhhhcCCCCHHHH
Q 000627 566 KKAH-CREKALKACDTKMPLDFI 587 (1383)
Q Consensus 566 ~~a~-Wl~~a~k~f~k~~sL~~L 587 (1383)
.+++ |+++++++|+++|+.+.|
T Consensus 311 ~~~~~W~~~~~k~F~k~ns~~~l 333 (335)
T PF08429_consen 311 KRAEDWMEKAKKLFLKKNSPLHL 333 (335)
T ss_pred HHHHHHHHHHHHHhcccCchhhh
Confidence 9999 999999999999986654
No 2
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=5.1e-37 Score=361.10 Aligned_cols=308 Identities=26% Similarity=0.465 Sum_probs=286.1
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHhcC----------------
Q 000627 418 VWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET-DMLLKMIGQAESCRARCSEALRG---------------- 480 (1383)
Q Consensus 418 ~W~~~v~~~L~~~~~~~~tLeeLr~Ll~ea~~l~v~~Pe~-d~L~ell~~aE~we~kA~~lL~~---------------- 480 (1383)
+|.++++++|+ .+.+++|.+|+.|+.||+...+.+|+. ..|+..+..|+.|.++|+.+|+.
T Consensus 2 ~W~~k~~~~l~--~~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~~ 79 (335)
T PF08429_consen 2 TWAEKVKEALE--ESPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQKS 79 (335)
T ss_pred hhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCccccccc
Confidence 59999999997 567899999999999999998666666 67888899999999999999974
Q ss_pred --CCCHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhccCCcCCCCh
Q 000627 481 --SMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDL 558 (1383)
Q Consensus 481 --~~tl~eLe~ll~e~~~lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~~~~~~~~~~p~l~eL~~Ll~~g~~L~V~lpel 558 (1383)
+.++++|.+|++++.++||++|++..|++++..+++|+.++++++.. ...+.++++++|++.|.+|+|++|++
T Consensus 80 ~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~-----~~~~~~~~le~Ll~~g~s~~v~lpel 154 (335)
T PF08429_consen 80 RNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSD-----PESPSLEELEELLEEGESFGVDLPEL 154 (335)
T ss_pred cccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhc-----cccCCHHHHHHHHHhcccCceeChhH
Confidence 28999999999999999999999999999999999999999999961 35678999999999999999999999
Q ss_pred hhHHHHHHHhHHHHHHHhhhcCC--CCHHHHHHHHHHhcccc-hhHHHHHHHhHHHHHHHHHHHHHHHhhcc-ccCCcch
Q 000627 559 PLVEVELKKAHCREKALKACDTK--MPLDFIRQVTAEAVILQ-IEREKLFIDLSGVLAAAMRWEERAADILI-HKAQMCE 634 (1383)
Q Consensus 559 ~~LE~~l~~a~Wl~~a~k~f~k~--~sL~~L~~Li~~g~~l~-~~vE~~~~eLq~ll~~~~~WeekA~~~L~-~~~~l~~ 634 (1383)
+.|+..+.+++|.++++.++... +||+.|+.||+.|..++ +.+++.|++|+.+++.++.|+++|+.+|. ..+++++
T Consensus 155 ~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~ 234 (335)
T PF08429_consen 155 DQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQ 234 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999988776 89999999999999888 68899999999999999999999999999 6789999
Q ss_pred HHHHHHHhhccccccCChHHHHHHHHHHHHHHHhhHHhhhhhcccCCCCCCccchhhHHHHHhccccCccccchhHHHHH
Q 000627 635 FEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEK 714 (1383)
Q Consensus 635 le~iI~ea~~ip~~Lp~~~~Lk~~l~~Ar~Wl~~~~~i~~~~~~~~~~~~~~p~LedL~~Lv~~~~~lpV~lee~~~Le~ 714 (1383)
|+++++++.+||+++|+...|++++.+|++|..+++.+... .++.+|++++|+.|+++|+.|||++++..+||.
T Consensus 235 Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~------~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~ 308 (335)
T PF08429_consen 235 LEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ------NGSKRPTLDELEELVAESEELPVKLEELSDLEK 308 (335)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999998631 477899999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHH-HHH-hh-hhhhc
Q 000627 715 VINNCERWQNHASS-LLQ-DA-RCLLD 738 (1383)
Q Consensus 715 ~i~~a~~W~e~a~~-fL~-~s-~~Lle 738 (1383)
++.+|+.|.+++.. |++ || ++||+
T Consensus 309 ~~~~~~~W~~~~~k~F~k~ns~~~ll~ 335 (335)
T PF08429_consen 309 QLKRAEDWMEKAKKLFLKKNSPLHLLE 335 (335)
T ss_pred HHHHHHHHHHHHHHHhcccCchhhhhC
Confidence 99999999999965 665 88 98886
No 3
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=99.97 E-value=3.9e-32 Score=354.81 Aligned_cols=215 Identities=37% Similarity=0.684 Sum_probs=171.4
Q ss_pred CccccchhhhcCcccccccceeeChhhHhhCCCceeeeecCCCcEEEecCCccccccccccchhhhcccCCCCccccchh
Q 000627 1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGF 80 (1383)
Q Consensus 1 mr~~~P~lf~~~pd~l~~~~t~~~P~~L~~~gvpv~~~~Q~~gefvitfP~ayh~gfn~Gfn~~EavnFa~~~Wl~~g~~ 80 (1383)
|++..|++|..|||++++++|+++|+.|..+|||||+++|+|||||||||++||+|||+||||+|+|||||.+||++|+.
T Consensus 380 ~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~ 459 (904)
T KOG1246|consen 380 MNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRG 459 (904)
T ss_pred HHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCcCCCChHHHHHHHhhhcCCCCchHHH--HHHHHHHHHHHHHHHHHHHhcCcccc-ccCCCCCCCCCCCCC
Q 000627 81 GADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYL--KRELLRVYTKERMWRERLWRKGIIKS-TPMGPRKCPEYVGTE 157 (1383)
Q Consensus 81 ~~~~y~~~~r~~vfsh~eLl~~~a~~~~~~~~~~~l--~~~l~~~~~~E~~~R~~l~~~gv~~~-~~~~~~~~~~~~~~~ 157 (1383)
++++|+...+.++|||++|++.+|.........-++ .............++...+..+++.. ++..... +. +
T Consensus 460 ~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 534 (904)
T KOG1246|consen 460 AAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKYERYLLES----LP-D 534 (904)
T ss_pred HHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHHHHHHHHh----cc-c
Confidence 999999999999999999999999865332111111 01111111111111111111111111 1111011 11 2
Q ss_pred C--cccccccccccccccccccccCCceeeccchhhhhcCCCCceEEEEecCHHHHHHHHHHHhc
Q 000627 158 E--DPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 220 (1383)
Q Consensus 158 ~--~~~C~~Ck~~~ylS~v~C~c~~~~~~CL~H~~~lc~C~~~~~~L~yRy~~~eL~~lv~~l~~ 220 (1383)
+ +++|..|+++||+|++.|+|.+.++.|+.|+.++|+|+...+++.|||++++|..++.+++.
T Consensus 535 ~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~ 599 (904)
T KOG1246|consen 535 DMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQL 599 (904)
T ss_pred hhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhh
Confidence 4 78999999999999999999999999999999999999999999999999999999988754
No 4
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=99.84 E-value=3.3e-22 Score=238.92 Aligned_cols=83 Identities=43% Similarity=0.801 Sum_probs=79.0
Q ss_pred CccccchhhhcCcccccccceeeChhhHhhCCCceeeeecCCCcEEEecCCccccccccccchhhhcccCCCCccccchh
Q 000627 1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGF 80 (1383)
Q Consensus 1 mr~~~P~lf~~~pd~l~~~~t~~~P~~L~~~gvpv~~~~Q~~gefvitfP~ayh~gfn~Gfn~~EavnFa~~~Wl~~g~~ 80 (1383)
|.+.+|+--..||+||+|++|+|||.+|++||||+++++|++|||+||||+.|||||||||||+|++|||++.|++||.+
T Consensus 224 a~~~fp~~~~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~ 303 (690)
T KOG0958|consen 224 ASELFPDSSQGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQ 303 (690)
T ss_pred HHhhCCccccCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhccc
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhH
Q 000627 81 GAD 83 (1383)
Q Consensus 81 ~~~ 83 (1383)
|..
T Consensus 304 a~~ 306 (690)
T KOG0958|consen 304 ALL 306 (690)
T ss_pred ccc
Confidence 653
No 5
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.53 E-value=6e-15 Score=126.97 Aligned_cols=54 Identities=46% Similarity=0.939 Sum_probs=52.2
Q ss_pred ccccccccccccccccccCCceeeccchhhhhcCCCCceEEEEecCHHHHHHHH
Q 000627 162 CIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF 215 (1383)
Q Consensus 162 C~~Ck~~~ylS~v~C~c~~~~~~CL~H~~~lc~C~~~~~~L~yRy~~~eL~~lv 215 (1383)
|.+||++||||+|+|+|+|++++||+|+.++|+|++++++|+||||++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999998999999999999999999999999999999999885
No 6
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.39 E-value=1.2e-13 Score=137.29 Aligned_cols=61 Identities=41% Similarity=0.706 Sum_probs=54.3
Q ss_pred hhcCcccccccceeeChhhHhhCCCceeeeecCCCcEEEecCCccccccccccchhhhccc
Q 000627 9 FDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF 69 (1383)
Q Consensus 9 f~~~pd~l~~~~t~~~P~~L~~~gvpv~~~~Q~~gefvitfP~ayh~gfn~Gfn~~EavnF 69 (1383)
...+|+++.+.+++++|..|.++|||+|+++|+|||||||+|++||++||.|+|++||+||
T Consensus 54 ~~~~~~~~~~~~~~~~p~~l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 54 SQNCPQFLDHKNIFVSPEQLKKAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp HHHSTTGGCTGGEEEGHHHHHHTTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccccccccccccceeeeeccCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 4678999999999999999999999999999999999999999999999999999999998
No 7
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.08 E-value=5.3e-11 Score=128.84 Aligned_cols=50 Identities=36% Similarity=0.955 Sum_probs=44.7
Q ss_pred ccCCCceEEEeccCCCCCCeeeec--CCC-CeeeccccCCCCCC-CceEcCCCCC
Q 000627 1237 LRARSMLYCICRKPYDEKAMIACY--QCD-EWYHIDCVKLLSAP-EIYICAACKP 1287 (1383)
Q Consensus 1237 ~~~~~~~yC~C~~p~~~~~Mi~Cd--~C~-~W~H~~Cvg~~~~~-~~~~C~~C~~ 1287 (1383)
..+.+.+||+|+++ .+|.||+|| .|. +|||+.|||+...| +.|||+.|..
T Consensus 216 ~se~e~lYCfCqqv-SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 216 NSEGEELYCFCQQV-SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cccCceeEEEeccc-ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 34678999999996 789999999 487 99999999999988 8999999985
No 8
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=99.00 E-value=1.4e-10 Score=132.60 Aligned_cols=54 Identities=33% Similarity=0.885 Sum_probs=46.7
Q ss_pred hccCCCceEEEeccCCCCCCeeeecC--CC-CeeeccccCCCCCC-CceEcCCCCCCCC
Q 000627 1236 SLRARSMLYCICRKPYDEKAMIACYQ--CD-EWYHIDCVKLLSAP-EIYICAACKPQAE 1290 (1383)
Q Consensus 1236 ~~~~~~~~yC~C~~p~~~~~Mi~Cd~--C~-~W~H~~Cvg~~~~~-~~~~C~~C~~~~~ 1290 (1383)
..+.+++.||+|.+ ..++.||+||. |. +|||+.|||+...| ++||||.|+....
T Consensus 213 ~~d~~e~~yC~Cnq-vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 213 AVDPDEPTYCICNQ-VSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccCCCCCEEEEecc-cccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 34556799999995 57899999997 99 99999999999887 8899999987543
No 9
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.62 E-value=1.9e-08 Score=119.40 Aligned_cols=51 Identities=25% Similarity=0.703 Sum_probs=43.7
Q ss_pred ceEEEeccCCCCCCeeeecCCCCeeeccccCCCCCC-------CceEcCCCCCCCCCC
Q 000627 1242 MLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP-------EIYICAACKPQAEES 1292 (1383)
Q Consensus 1242 ~~yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~~-------~~~~C~~C~~~~~~~ 1292 (1383)
..||+|++|.....||||+.|..|||..|......+ ..|||..|..+....
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 669999999887799999999999999999987653 689999998765543
No 10
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.51 E-value=1.6e-08 Score=86.28 Aligned_cols=44 Identities=36% Similarity=1.055 Sum_probs=38.9
Q ss_pred EE-EeccCCCCCCeeeecCCCCeeeccccCCCCC-----CCceEcCCCCC
Q 000627 1244 YC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA-----PEIYICAACKP 1287 (1383)
Q Consensus 1244 yC-~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~-----~~~~~C~~C~~ 1287 (1383)
|| +|+++.+++.||+||.|+.|||..|+|++.. ...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 68 9999777899999999999999999999976 25899999964
No 11
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.25 E-value=2.8e-07 Score=78.61 Aligned_cols=48 Identities=25% Similarity=0.800 Sum_probs=40.1
Q ss_pred ccccccCCCcCcceeeccccccccccCcCCccccc-cCCCCccccCCcc
Q 000627 986 LCMCCESDSKELEFLICSACKDCYHLQCLRPTEVD-RNHAEAYICPYCQ 1033 (1383)
Q Consensus 986 ~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~-~~~~~~w~C~~C~ 1033 (1383)
+|.+|+....++.||.|+.|+.|||..|++++... ......|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48789888889999999999999999999999432 2223499999997
No 13
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=97.98 E-value=6.2e-07 Score=105.67 Aligned_cols=58 Identities=19% Similarity=0.473 Sum_probs=45.2
Q ss_pred ccccccCCCcCcceeeccccccccccCc--CCccccccCCCCccccCCcccccccccccc
Q 000627 986 LCMCCESDSKELEFLICSACKDCYHLQC--LRPTEVDRNHAEAYICPYCQYFESESVSQF 1043 (1383)
Q Consensus 986 ~C~~C~~~~~~~~~i~Cd~C~~~YH~~C--v~~~~~~~~~~~~w~C~~C~~~~~~~~~~~ 1043 (1383)
+|.|-...+.+.+|+.|+.|.+|||+.| |++..........|.|..|.....+....+
T Consensus 62 ~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~~~~ 121 (345)
T KOG1632|consen 62 YCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMSESD 121 (345)
T ss_pred hhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhhhhc
Confidence 5653333344459999999999999999 999988889999999999996665544444
No 14
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.69 E-value=1.2e-05 Score=88.35 Aligned_cols=45 Identities=33% Similarity=0.634 Sum_probs=40.0
Q ss_pred EeccCCCCCCeeeecCCCCeeeccccCCCCCC-CceEcC-CCCCCCC
Q 000627 1246 ICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP-EIYICA-ACKPQAE 1290 (1383)
Q Consensus 1246 ~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~-~C~~~~~ 1290 (1383)
||++|.-..+|+.||.|+.=||.-|||+..-| +.|+|. .|+..+.
T Consensus 319 IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~~~~ 365 (381)
T KOG1512|consen 319 ICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCREATL 365 (381)
T ss_pred ccCCcccchheeccccccCCCCccccccccccCccchhhhHHHHhcC
Confidence 89999888899999999999999999999987 899998 5776444
No 16
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.65 E-value=1.7e-05 Score=91.19 Aligned_cols=50 Identities=20% Similarity=0.602 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCcCcceeeccc--cc-cccccCcCCccccccCCCCccccCCcc
Q 000627 979 HGSVSMTLCMCCESDSKELEFLICSA--CK-DCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 979 ~~~~~~~~C~~C~~~~~~~~~i~Cd~--C~-~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
.+.++..+|.|+ ...-..||.||. |. +|||+.|||++.. ..+.|.||.|.
T Consensus 214 ~d~~e~~yC~Cn--qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~---PkgkWyC~~C~ 266 (274)
T KOG1973|consen 214 VDPDEPTYCICN--QVSYGKMIGCDNPGCPIEWFHFTCVGLKTK---PKGKWYCPRCK 266 (274)
T ss_pred cCCCCCEEEEec--ccccccccccCCCCCCcceEEEeccccccC---CCCcccchhhh
Confidence 345677889977 555578999999 99 9999999999943 24569999999
No 17
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.85 E-value=0.00022 Score=87.22 Aligned_cols=64 Identities=27% Similarity=0.567 Sum_probs=43.1
Q ss_pred cccccccCC--CcCcceeeccccccccccCcCCccccccCCCCccccCCccccccccccccCCCCcccC
Q 000627 985 TLCMCCESD--SKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFG 1051 (1383)
Q Consensus 985 ~~C~~C~~~--~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~~~~~~~g~~~~~~~ 1051 (1383)
.+|..|..- ...+.|+.|..|+..||..||......+....-|-||.|...+.- .++|+.++|.
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c---~~~gD~~kf~ 84 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEAC---GTTGDPKKFL 84 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeec---cccCCccccc
Confidence 456667543 345789999999999999999965322223344999999854432 3556655554
No 18
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.53 E-value=0.00077 Score=81.04 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=36.3
Q ss_pred ccccc--CCCcCcceeeccccccccccCcCCcc--ccccCCC-CccccCCcc
Q 000627 987 CMCCE--SDSKELEFLICSACKDCYHLQCLRPT--EVDRNHA-EAYICPYCQ 1033 (1383)
Q Consensus 987 C~~C~--~~~~~~~~i~Cd~C~~~YH~~Cv~~~--~~~~~~~-~~w~C~~C~ 1033 (1383)
|+.|+ .+...+.||+|++|..|||..|+.+. ....... -.|.|..|.
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCN 222 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhc
Confidence 66654 44455799999999999999999998 2333333 669999999
No 19
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.0014 Score=77.80 Aligned_cols=53 Identities=34% Similarity=0.817 Sum_probs=45.2
Q ss_pred CceEEEeccCCCCC-CeeeecCCCCeeeccc--cCCCCC----CCceEcCCCCCCCCCCC
Q 000627 1241 SMLYCICRKPYDEK-AMIACYQCDEWYHIDC--VKLLSA----PEIYICAACKPQAEESS 1293 (1383)
Q Consensus 1241 ~~~yC~C~~p~~~~-~Mi~Cd~C~~W~H~~C--vg~~~~----~~~~~C~~C~~~~~~~~ 1293 (1383)
...||.|..+++.. +|++||.|.+|||+.| ||+... ++.|+|..|.....+..
T Consensus 59 ~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~ 118 (345)
T KOG1632|consen 59 TQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMS 118 (345)
T ss_pred hhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhh
Confidence 35599999998864 8999999999999999 999975 38899999987666554
No 20
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=96.08 E-value=0.0037 Score=70.81 Aligned_cols=32 Identities=34% Similarity=1.155 Sum_probs=26.8
Q ss_pred ceEEEeccCCCC------CCeeeecCCCCeee-ccccCC
Q 000627 1242 MLYCICRKPYDE------KAMIACYQCDEWYH-IDCVKL 1273 (1383)
Q Consensus 1242 ~~yC~C~~p~~~------~~Mi~Cd~C~~W~H-~~Cvg~ 1273 (1383)
..||+|.+||++ +.|+||..|++||| ..|+.-
T Consensus 128 G~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 128 GLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred ceeEEecCCCCCccccccceeeeEEeccchhcccccCcc
Confidence 669999999986 67999999999999 455443
No 21
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.96 E-value=0.004 Score=76.58 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=37.1
Q ss_pred eEE-EeccCCCCCCeeeecCCCCeeeccccCCCCC-----CCceEcCCCCC
Q 000627 1243 LYC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA-----PEIYICAACKP 1287 (1383)
Q Consensus 1243 ~yC-~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~-----~~~~~C~~C~~ 1287 (1383)
.|| .|++++.....|+||.|..=||..|+..+-+ ++.|+|+.|.-
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 388 8998755555799999999999999998743 38999999964
No 22
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.79 E-value=0.0032 Score=82.79 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCccccccccccCCCcC--cceeeccccccccccCcCCccccccCCCCccccCCcccccccccc-----ccCCCCcccCC
Q 000627 980 GSVSMTLCMCCESDSKE--LEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVS-----QFGGSPLRFGG 1052 (1383)
Q Consensus 980 ~~~~~~~C~~C~~~~~~--~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~~~~~-----~~g~~~~~~~~ 1052 (1383)
+.+.+..|++|.....+ ++++.||.|+-.+|+.|+|+.. ...+.|+|..|.+...+.+- ..||+=++-..
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~---ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~d 291 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPF---IPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDD 291 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCC---CCCCcEeehhhccCcCcccceEeccCCCCcceeccC
Confidence 35678899999887666 9999999999999999999553 34689999999976665422 55666555544
Q ss_pred CC
Q 000627 1053 KR 1054 (1383)
Q Consensus 1053 ~r 1054 (1383)
.|
T Consensus 292 gr 293 (1051)
T KOG0955|consen 292 GR 293 (1051)
T ss_pred Cc
Confidence 44
No 23
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.70 E-value=0.0047 Score=68.70 Aligned_cols=50 Identities=28% Similarity=0.615 Sum_probs=42.1
Q ss_pred CccccccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccC-Ccc
Q 000627 981 SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICP-YCQ 1033 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~-~C~ 1033 (1383)
|.+=.+|.||.++.-..+|+.||.|+.+||.-|||...- ..+.|+|- +|.
T Consensus 311 C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~l---P~G~WICD~~C~ 361 (381)
T KOG1512|consen 311 CSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDL---PRGEWICDMRCR 361 (381)
T ss_pred hcccHhhhccCCcccchheeccccccCCCCccccccccc---cCccchhhhHHH
Confidence 445578999999999999999999999999999998721 24789998 466
No 24
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.53 E-value=0.0055 Score=75.91 Aligned_cols=50 Identities=28% Similarity=0.771 Sum_probs=42.3
Q ss_pred ccccccCCCcCcceeeccccccc-cccCcCCccccccCCCCccccCCccccc
Q 000627 986 LCMCCESDSKELEFLICSACKDC-YHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 986 ~C~~C~~~~~~~~~i~Cd~C~~~-YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
-|.||...+....||.||.|.+. ||..|+.|...+ --...|.|+.|.-++
T Consensus 217 ~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~e-iP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 217 KCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSE-SPVNEWYCTNCSLLE 267 (1134)
T ss_pred cceeeccCChHHhheeecccccceeeccccCccccc-ccccceecCcchhhh
Confidence 38899999999999999999999 999999997433 235789999999443
No 25
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=95.48 E-value=0.006 Score=67.63 Aligned_cols=50 Identities=26% Similarity=0.759 Sum_probs=43.1
Q ss_pred cccccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 983 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 983 ~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
+=.+|.+|+....++.++.||.|+.+||..|+.|+... +..+.|.|.-|.
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~e-ppegswsc~KOG 329 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVE-PPEGSWSCHLCL 329 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCC-CCCCchhHHHHH
Confidence 44679999999999999999999999999999988544 445789999997
No 26
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.00 E-value=0.0054 Score=48.68 Aligned_cols=33 Identities=21% Similarity=0.722 Sum_probs=19.2
Q ss_pred CCeeeecCCCCeeeccccCCCCCC--CceEcCCCC
Q 000627 1254 KAMIACYQCDEWYHIDCVKLLSAP--EIYICAACK 1286 (1383)
Q Consensus 1254 ~~Mi~Cd~C~~W~H~~Cvg~~~~~--~~~~C~~C~ 1286 (1383)
..||+|+.|...+|..|-|+...+ +.|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 369999999999999999999976 359998874
No 27
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=94.83 E-value=0.016 Score=72.89 Aligned_cols=54 Identities=33% Similarity=0.782 Sum_probs=46.8
Q ss_pred CCceEEEeccCCC-CCCeeeecCCCCeeeccccCCCCC--CCceEcCCCCCCCCCCC
Q 000627 1240 RSMLYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSA--PEIYICAACKPQAEESS 1293 (1383)
Q Consensus 1240 ~~~~yC~C~~p~~-~~~Mi~Cd~C~~W~H~~Cvg~~~~--~~~~~C~~C~~~~~~~~ 1293 (1383)
....-|+|+.-++ +++||||+.|..|-|..|+|.... |+.|.|..|........
T Consensus 84 ~~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~ 140 (508)
T KOG1844|consen 84 REISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVE 140 (508)
T ss_pred CcccccccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeeccccccch
Confidence 4577899999888 899999999999999999998875 58999999998665443
No 28
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.50 E-value=0.019 Score=71.35 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=38.9
Q ss_pred ceEE-EeccCCCCCCeeeecCCCCe-eeccccCCCCC---CCceEcCCCCCC
Q 000627 1242 MLYC-ICRKPYDEKAMIACYQCDEW-YHIDCVKLLSA---PEIYICAACKPQ 1288 (1383)
Q Consensus 1242 ~~yC-~C~~p~~~~~Mi~Cd~C~~W-~H~~Cvg~~~~---~~~~~C~~C~~~ 1288 (1383)
.+-| ||..++....|+-||.|+.- ||..|+...-. ...|||+.|.-.
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 4556 99998777889999999966 99999998652 389999999754
No 29
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.48 E-value=0.017 Score=68.58 Aligned_cols=53 Identities=26% Similarity=0.585 Sum_probs=43.4
Q ss_pred cccccCCCcCcceeeccccccccccCcCCccccccCC---CCccccCCcccccccc
Q 000627 987 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNH---AEAYICPYCQYFESES 1039 (1383)
Q Consensus 987 C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~---~~~w~C~~C~~~~~~~ 1039 (1383)
|.+|+...+++..+.||.|..-||..|+.|+....+. ...|.|..|...++.+
T Consensus 547 CgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~esSD 602 (707)
T KOG0957|consen 547 CGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKNESSD 602 (707)
T ss_pred eeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccccCcc
Confidence 9999999999999999999999999999999443222 3569999997545443
No 30
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.34 E-value=0.022 Score=70.42 Aligned_cols=52 Identities=21% Similarity=0.636 Sum_probs=40.9
Q ss_pred ccccccccCCCcCcceeeccccccccccCcCCccccc-cCCCCccccCCcccc
Q 000627 984 MTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVD-RNHAEAYICPYCQYF 1035 (1383)
Q Consensus 984 ~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~-~~~~~~w~C~~C~~~ 1035 (1383)
..||..|.+...-..+|.||.|-..||+.|+.|+... .--.+.|+|+.|...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 4599999766444778999999999999999998322 223379999999943
No 31
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.24 E-value=0.03 Score=69.73 Aligned_cols=69 Identities=23% Similarity=0.484 Sum_probs=52.0
Q ss_pred cccccccccCCCc--CcceeeccccccccccCcCCccccccCCCCccccCCcccccc-ccc--cccCCCCcccCCCC
Q 000627 983 SMTLCMCCESDSK--ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFES-ESV--SQFGGSPLRFGGKR 1054 (1383)
Q Consensus 983 ~~~~C~~C~~~~~--~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~-~~~--~~~g~~~~~~~~~r 1054 (1383)
++.+|-.|+.++. .++||.||.|..+-|..|.|+..-. .+.|.|..|...-- .-. .+.||+-+..+...
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p---~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT 343 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVP---EGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGT 343 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecC---CCCeeehhccccCCCCeeeccccCCcccccCCCC
Confidence 6677999988855 4999999999999999999999432 38999999984422 111 27788877665444
No 32
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=94.13 E-value=0.027 Score=62.48 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=36.5
Q ss_pred CccccccccccCCCcCcceeeccc--cc-cccccCcCCccccccCCCCccccCCcc
Q 000627 981 SVSMTLCMCCESDSKELEFLICSA--CK-DCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~--C~-~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
.+...||.|-+... ..||.||. |. +|||..|||... +..+.|.||.|.
T Consensus 218 e~e~lYCfCqqvSy--GqMVaCDn~nCkrEWFH~~CVGLk~---pPKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSY--GQMVACDNANCKREWFHLECVGLKE---PPKGKWYCPECK 268 (271)
T ss_pred cCceeEEEeccccc--ccceecCCCCCchhheeccccccCC---CCCCcEeCHHhH
Confidence 45667898654444 46999995 64 799999999883 235799999997
No 33
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=93.75 E-value=0.037 Score=68.95 Aligned_cols=47 Identities=30% Similarity=0.813 Sum_probs=39.5
Q ss_pred CceEE-EeccCCCC--CCeeeecCCCCeeeccccCCCCCC-CceEcCCCCC
Q 000627 1241 SMLYC-ICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAP-EIYICAACKP 1287 (1383)
Q Consensus 1241 ~~~yC-~C~~p~~~--~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~ 1287 (1383)
+.+.| +|+.|+.. ..||.||.|+--.|..|.||...| +.|.|..|.-
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCAL 320 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccc
Confidence 45667 99998653 679999999999999999999987 6799888853
No 34
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=92.18 E-value=0.11 Score=69.06 Aligned_cols=55 Identities=18% Similarity=0.511 Sum_probs=44.4
Q ss_pred cCCCceEEEeccCCCC--CCeeeecCCCCeeeccccCCCCCC-CceEcCCCCCCCCCC
Q 000627 1238 RARSMLYCICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAEES 1292 (1383)
Q Consensus 1238 ~~~~~~yC~C~~p~~~--~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~~~~~~ 1292 (1383)
-+.+..+|||....-. .+.|.||+|+--+|.+|+|+...| +.|+|-.|-......
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc
Confidence 4566889999875433 789999999999999999977765 789999997655443
No 35
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=91.64 E-value=0.033 Score=44.31 Aligned_cols=35 Identities=26% Similarity=0.738 Sum_probs=19.8
Q ss_pred cceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 997 LEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 997 ~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
+.+|.|+.|+-..|.+|.|+.... ....|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~--~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVP--DGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS----SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCC--CCCcEECCcCC
Confidence 579999999999999999999543 33359999884
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.44 E-value=60 Score=43.76 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=22.4
Q ss_pred HhhCCCceeeeecCCCcEEEecCCccc
Q 000627 28 LVENGVPVYSVLQEPGNFVITFPRSYH 54 (1383)
Q Consensus 28 L~~~gvpv~~~~Q~~gefvitfP~ayh 54 (1383)
++..||-=+|.+|.+.-|.=.||..-.
T Consensus 1135 ~C~~Gv~G~rCdqCaRgy~G~fP~C~P 1161 (1758)
T KOG0994|consen 1135 VCRPGVGGPRCDQCARGYSGQFPVCVP 1161 (1758)
T ss_pred eecCCCCCcchhhhhhhhcCCCCCCcc
Confidence 567889999999999999888887543
No 37
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=90.86 E-value=0.15 Score=61.06 Aligned_cols=48 Identities=25% Similarity=0.648 Sum_probs=38.0
Q ss_pred ceEEEecc--CCCCCCeeeecCCCCeeeccccCCCCC-----------CCceEcCCCCCCC
Q 000627 1242 MLYCICRK--PYDEKAMIACYQCDEWYHIDCVKLLSA-----------PEIYICAACKPQA 1289 (1383)
Q Consensus 1242 ~~yC~C~~--p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~-----------~~~~~C~~C~~~~ 1289 (1383)
.++|+|-+ ..+.+..||||.|+.=.|..|.|+... ...|||..|.-+-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 47899944 333488999999999999999999853 1679999997543
No 38
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=89.66 E-value=0.18 Score=56.36 Aligned_cols=44 Identities=27% Similarity=0.764 Sum_probs=38.4
Q ss_pred EE-EeccCCCCCCeeeecCCCCeeeccccCCCCC---CCceEcCCCCC
Q 000627 1244 YC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA---PEIYICAACKP 1287 (1383)
Q Consensus 1244 yC-~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~---~~~~~C~~C~~ 1287 (1383)
|| ||+...++...+.||.|+.=||..|+..+-. .+.|-|.-|..
T Consensus 283 ~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 88 9999999999999999999999999986542 37899999964
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=87.76 E-value=0.15 Score=70.21 Aligned_cols=55 Identities=29% Similarity=0.740 Sum_probs=47.1
Q ss_pred CccccccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCccccc
Q 000627 981 SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
....++|-+|+...+++.|+-|+.|..|||..|+.|.....+ .+.|+||.|...+
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~-~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVP-PGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCC-cCCccCCccchhh
Confidence 556788999999999999999999999999999999865533 4569999999444
No 40
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=87.19 E-value=0.44 Score=49.74 Aligned_cols=33 Identities=33% Similarity=0.774 Sum_probs=25.7
Q ss_pred ccccCcCCccccccCCCCccccCCcccccccccc
Q 000627 1008 CYHLQCLRPTEVDRNHAEAYICPYCQYFESESVS 1041 (1383)
Q Consensus 1008 ~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~~~~~ 1041 (1383)
+||..|+.|+...++. +.|+||.|....++...
T Consensus 1 g~H~~CL~Ppl~~~P~-g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 1 GFHLCCLRPPLKEVPE-GDWICPFCEVEKSGQSA 33 (148)
T ss_pred CcccccCCCCCCCCCC-CCcCCCCCcCCCCCCcc
Confidence 6999999999766554 78999999966655333
No 41
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=87.19 E-value=0.24 Score=63.48 Aligned_cols=52 Identities=29% Similarity=0.724 Sum_probs=41.3
Q ss_pred CccccccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCccccc
Q 000627 981 SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
......|.+|... ...|.|+.|..+||-.|.++........+ |.|++|....
T Consensus 44 ~~~~e~c~ic~~~---g~~l~c~tC~~s~h~~cl~~pl~~~p~~~-~~c~Rc~~p~ 95 (696)
T KOG0383|consen 44 DAEQEACRICADG---GELLWCDTCPASFHASCLGPPLTPQPNGE-FICPRCFCPK 95 (696)
T ss_pred hhhhhhhhhhcCC---CcEEEeccccHHHHHHccCCCCCcCCccc-eeeeeeccCC
Confidence 4456678888443 46788999999999999999977777777 9999997433
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.09 E-value=1.3e+02 Score=40.84 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHh--CCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Q 000627 482 MSLKTVELLLQEL--GDFTVNMPELELLKQYHSDAIFWIARLNDILV 526 (1383)
Q Consensus 482 ~tl~eLe~ll~e~--~~lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~ 526 (1383)
.+.++++++.+++ -.||....++..|.+.+.....=+..++.||.
T Consensus 1489 adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1489 ADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred CCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4555555555554 34555555555555555555555555555554
No 43
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=86.26 E-value=0.15 Score=70.25 Aligned_cols=51 Identities=22% Similarity=0.709 Sum_probs=41.8
Q ss_pred CCceEE-EeccCCCCCCeeeecCCCCeeeccccCCCCC---CCceEcCCCCCCCC
Q 000627 1240 RSMLYC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA---PEIYICAACKPQAE 1290 (1383)
Q Consensus 1240 ~~~~yC-~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~---~~~~~C~~C~~~~~ 1290 (1383)
.....| +|+.-.....|+-|+.|..|||..|+.+.-. +..|+||.|++...
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 345567 8988766678999999999999999987654 48899999998664
No 44
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=83.43 E-value=0.51 Score=56.69 Aligned_cols=51 Identities=24% Similarity=0.591 Sum_probs=39.7
Q ss_pred ccccccccCCCc--CcceeeccccccccccCcCCccccccCCCCccccCCcccccc
Q 000627 984 MTLCMCCESDSK--ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFES 1037 (1383)
Q Consensus 984 ~~~C~~C~~~~~--~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~ 1037 (1383)
.+.|..|-+.+. .+.++.||.|..+-|++|.|+.-- ..+.|+|..|.+..-
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~---peG~WlCrkCi~~~~ 245 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFL---PEGFWLCRKCIYGEY 245 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccceec---Ccchhhhhhhccccc
Confidence 466888876543 488899999999999999998821 135899999995554
No 45
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=82.53 E-value=2 Score=45.65 Aligned_cols=47 Identities=26% Similarity=0.668 Sum_probs=33.9
Q ss_pred ccccc---CCCcCcceeeccccccccccCcCCccccc-------cCCCCccccCCcc
Q 000627 987 CMCCE---SDSKELEFLICSACKDCYHLQCLRPTEVD-------RNHAEAYICPYCQ 1033 (1383)
Q Consensus 987 C~~C~---~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~-------~~~~~~w~C~~C~ 1033 (1383)
|..|. ....-..+|.|-.|-..||..|+|+-... ......-.|.+|+
T Consensus 2 C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci 58 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI 58 (175)
T ss_pred cccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence 66674 34445789999999999999999987322 2222334599999
No 46
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=81.66 E-value=0.94 Score=56.59 Aligned_cols=46 Identities=22% Similarity=0.691 Sum_probs=37.8
Q ss_pred ceEEEeccC--CCCCCeeeec--CCCCeeeccccCCCCCC-CceEcCCCCC
Q 000627 1242 MLYCICRKP--YDEKAMIACY--QCDEWYHIDCVKLLSAP-EIYICAACKP 1287 (1383)
Q Consensus 1242 ~~yC~C~~p--~~~~~Mi~Cd--~C~~W~H~~Cvg~~~~~-~~~~C~~C~~ 1287 (1383)
.-+|+|... +.....|-|| .|..-.|..|.||...| +.|||..|..
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCES 56 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhh
Confidence 458999653 3346699999 59999999999999987 8999999954
No 47
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=78.18 E-value=3 Score=50.67 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=26.6
Q ss_pred hHHHHHHHHhccccchhhHHHHHHHHHhccccccC
Q 000627 888 LWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFD 922 (1383)
Q Consensus 888 ~Wq~r~~~~~~~~~~~~s~~~l~~l~~~g~~~~~~ 922 (1383)
.-++.++.++..+...--+-.|++++..+.||+..
T Consensus 22 ~lk~~lr~i~~~~~~r~e~~~lQ~~l~~RsDLt~~ 56 (446)
T PF07227_consen 22 ELKEYLREILEGPEKREEFVALQKLLQRRSDLTSE 56 (446)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhccccCCHH
Confidence 45667777877775556788889999999998755
No 48
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=76.05 E-value=3.7 Score=51.87 Aligned_cols=31 Identities=23% Similarity=0.628 Sum_probs=25.2
Q ss_pred CCeeeecCCCCeeeccccCCCCCCCceEcCCCCCC
Q 000627 1254 KAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQ 1288 (1383)
Q Consensus 1254 ~~Mi~Cd~C~~W~H~~Cvg~~~~~~~~~C~~C~~~ 1288 (1383)
+.-..|+.|.-|||-.|....... ||.|...
T Consensus 529 ~~~~rC~~C~avfH~~C~~r~s~~----CPrC~R~ 559 (580)
T KOG1829|consen 529 RNTRRCSTCLAVFHKKCLRRKSPC----CPRCERR 559 (580)
T ss_pred ccceeHHHHHHHHHHHHHhccCCC----CCchHHH
Confidence 446889999999999998766654 9999753
No 49
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=74.13 E-value=1.3 Score=57.03 Aligned_cols=41 Identities=24% Similarity=0.613 Sum_probs=32.9
Q ss_pred EEEeccCCCCCCeeeecCCCCeeeccccCCCCCC---CceEcCCCCC
Q 000627 1244 YCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP---EIYICAACKP 1287 (1383)
Q Consensus 1244 yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~~---~~~~C~~C~~ 1287 (1383)
+|+|.. ++.-+.||.|..|||..|.|..-.+ ..|.|+.|..
T Consensus 50 c~ic~~---~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 50 CRICAD---GGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhcC---CCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 458875 5788899999999999999877542 4499999954
No 50
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.81 E-value=4.2 Score=45.22 Aligned_cols=67 Identities=28% Similarity=0.574 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHhhhhhhccCCCCCCccccc-cccccCC-----CcCcceeeccccccccccCcCCccccccCCCCcc
Q 000627 954 KNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTL-CMCCESD-----SKELEFLICSACKDCYHLQCLRPTEVDRNHAEAY 1027 (1383)
Q Consensus 954 ~~sL~~~l~~i~~~l~~~~~~~~~~~~~~~~~~-C~~C~~~-----~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w 1027 (1383)
.++|...|+.+.+....- |+ .=+.|.+.++ |-+|..+ .+......|..|+.-||..|..- -
T Consensus 124 ~G~L~~~L~~l~~~~~~H--V~-~C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----------~ 190 (202)
T PF13901_consen 124 SGQLLPQLEKLVQFAEKH--VY-SCELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----------K 190 (202)
T ss_pred hchHHHHHHHHHHHHHHH--HH-HhHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----------C
Confidence 455666666665442221 11 1123556665 8889754 34468899999999999999662 1
Q ss_pred ccCCcc
Q 000627 1028 ICPYCQ 1033 (1383)
Q Consensus 1028 ~C~~C~ 1033 (1383)
.||.|.
T Consensus 191 ~CpkC~ 196 (202)
T PF13901_consen 191 SCPKCA 196 (202)
T ss_pred CCCCcH
Confidence 299998
No 51
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.45 E-value=2.4 Score=36.85 Aligned_cols=34 Identities=24% Similarity=0.596 Sum_probs=28.4
Q ss_pred cccccccccCCCc-CcceeeccccccccccCcCCc
Q 000627 983 SMTLCMCCESDSK-ELEFLICSACKDCYHLQCLRP 1016 (1383)
Q Consensus 983 ~~~~C~~C~~~~~-~~~~i~Cd~C~~~YH~~Cv~~ 1016 (1383)
.+..|.+|+.+.. ...++.|..|+.=||..|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4567999988854 688999999999999999743
No 52
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.51 E-value=3.6 Score=50.06 Aligned_cols=46 Identities=35% Similarity=0.876 Sum_probs=33.5
Q ss_pred EEEeccCCCC----CCeeeecCCCCeeecccc--------CCCCC------CCceEcCCCCCCCC
Q 000627 1244 YCICRKPYDE----KAMIACYQCDEWYHIDCV--------KLLSA------PEIYICAACKPQAE 1290 (1383)
Q Consensus 1244 yC~C~~p~~~----~~Mi~Cd~C~~W~H~~Cv--------g~~~~------~~~~~C~~C~~~~~ 1290 (1383)
+|+|.+ +|+ --+|.||.|..|-|.+|. |.+.. +..|+|..|.....
T Consensus 131 C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 131 CCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred ccccCC-cccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 559988 443 339999999999999994 32221 24799999987544
No 53
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=67.81 E-value=2.1 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.535 Sum_probs=36.5
Q ss_pred EeccCCC--CCCeeeecCCCCeeeccccCCCCCC-CceEcCCCCCCCC
Q 000627 1246 ICRKPYD--EKAMIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAE 1290 (1383)
Q Consensus 1246 ~C~~p~~--~~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~~~~ 1290 (1383)
+|...++ ....|-||+|+--.|..|-||.--| +.|+|..|.-+..
T Consensus 198 ~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~ 245 (669)
T COG5141 198 KCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEY 245 (669)
T ss_pred hccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhccccc
Confidence 7766554 3669999999999999999999877 5899999965443
No 54
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=65.66 E-value=5 Score=43.79 Aligned_cols=36 Identities=28% Similarity=0.606 Sum_probs=29.2
Q ss_pred CCeeeecCCCCeeeccccCCCCCC-CceEcCCCCCCCCC
Q 000627 1254 KAMIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAEE 1291 (1383)
Q Consensus 1254 ~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~~~~~ 1291 (1383)
..-+-|..|. .|..|+.+.+.+ +.|+|+.|...++.
T Consensus 190 ~~alIC~~C~--hhngl~~~~ek~~~efiC~~Cn~~n~~ 226 (251)
T COG5415 190 FKALICPQCH--HHNGLYRLAEKPIIEFICPHCNHKNDE 226 (251)
T ss_pred hhhhcccccc--ccccccccccccchheecccchhhcCc
Confidence 4467799998 489999999887 56999999987763
No 55
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=60.48 E-value=6.3 Score=48.73 Aligned_cols=49 Identities=18% Similarity=0.670 Sum_probs=37.2
Q ss_pred CCceEEEeccCCCC-CCeeeecCCCCeeeccccCCCCC---------CCceEcCCCCCC
Q 000627 1240 RSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSA---------PEIYICAACKPQ 1288 (1383)
Q Consensus 1240 ~~~~yC~C~~p~~~-~~Mi~Cd~C~~W~H~~Cvg~~~~---------~~~~~C~~C~~~ 1288 (1383)
....+|+|+...+. -.-+||..|-.|||..|.-.+.. .+.|.|..|...
T Consensus 18 ~~~~~~y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 18 KQATVCYCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred cCccccccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCc
Confidence 34679999986664 44899999999999865544332 278999999976
No 56
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=58.96 E-value=5.1 Score=50.52 Aligned_cols=55 Identities=24% Similarity=0.658 Sum_probs=41.6
Q ss_pred CccccccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCccccc
Q 000627 981 SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
|-+=..|..|+...+...+.-|+.|+..||..|..|.-.. -..+.|.|+.|...+
T Consensus 65 C~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~-v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 65 CPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDK-VPSGPWLCKKCTRCR 119 (694)
T ss_pred cCCceeeeeccccCCcccccccccccccccccccCCcccc-ccCcccccHHHHhhh
Confidence 3344567778877777888899999999999999988433 235789999887433
No 57
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=58.82 E-value=1.8 Score=35.70 Aligned_cols=42 Identities=19% Similarity=0.533 Sum_probs=28.7
Q ss_pred ccccccCCCc-CcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 986 LCMCCESDSK-ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 986 ~C~~C~~~~~-~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
.|.+|..+.. ++.++... |+..||.+|+..-... ...||.|.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-----~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-----NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-----SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-----CCcCCccC
Confidence 4889988764 45555555 9999999997655322 23899883
No 58
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=58.53 E-value=4.4 Score=54.95 Aligned_cols=174 Identities=12% Similarity=0.079 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH--hh-hhhhc----cCCCCCCchhh-----HHHHHHHH-HHhhhhhhccCCccccc
Q 000627 708 EQTELEKVINNCERWQNHASSLLQ--DA-RCLLD----KDDIGDGLSNS-----LVSKIEQL-ITSMESAANCGLSLGFD 774 (1383)
Q Consensus 708 e~~~Le~~i~~a~~W~e~a~~fL~--~s-~~Lle----~~~~~~~~~~~-----~~~k~~~~-~~~~~~~~~~~~sl~~~ 774 (1383)
++..|...+-.++.|.+++..+.. ++ +..++ +.++- +.+.. +...+... .+ + .......+-+.
T Consensus 704 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~v~~~~~~~~~~~l~~~~~~-~--~~~~~~~~~~~ 779 (904)
T KOG1246|consen 704 SEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVS-WNVSESTFAQLALALFRHDHN-I--ESKHPSSVPMS 779 (904)
T ss_pred hhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccce-ecccccchhhhhcchhhhhhh-h--hccCcccchhh
Confidence 677788888899999999976554 33 55555 11111 11111 11111110 00 0 11111133344
Q ss_pred hHHHHHHHh-hhchhhhhccccccccCCCChh-hHH-HHHHHhhcCcCcccccccchhhhhhhHHHHHhhhccCCccccC
Q 000627 775 FHEISELQN-ACSTLHWCKKALSFLSVSPSLE-DVE-SLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFK 851 (1383)
Q Consensus 775 l~e~~~L~~-s~~~~~~~~~~~c~c~~~p~~~-~~~-~lc~~~~h~~~~cv~~~l~~~~~~~~~wl~~~~~~lp~c~rS~ 851 (1383)
|+..+..+. .....+..-.....|.....+. +++ ++|.++|| -.|+..+-.....+ +|-++.
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~-------------~c~~~~ 844 (904)
T KOG1246|consen 780 FKVWEMAEKEVMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFH--EICVAVPEKVELSH-------------LCSRCE 844 (904)
T ss_pred hhhhhHhhcchhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhh--heecccCCCccccc-------------hhhhcc
Confidence 443332222 1111111111111366655555 677 99999999 77777433322222 677899
Q ss_pred CCChhhHHHHHhcccccccccchhhHHHHHHHHHhHhHHHHHHHHhccccc
Q 000627 852 RCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCA 902 (1383)
Q Consensus 852 rp~L~~i~~lL~~lq~i~v~~pe~~~~L~~~ier~~~Wq~r~~~~~~~~~~ 902 (1383)
||++..|..+....+.++++.++. ..++.+++++ .|+..+.+.+...+-
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~-~~~~~~~~~~~~~~~ 893 (904)
T KOG1246|consen 845 RPRLAVIFVLDPNLKPTPYRVLEN-EKLRCTIEQA-IWLQVALQQFSSEDL 893 (904)
T ss_pred ccchheeeeeccCCCCCccccccc-cccccchhcc-hHHHHHHHhhhhhhh
Confidence 999999999999999999999998 9999999999 999999999988733
No 59
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=55.59 E-value=5.6 Score=50.26 Aligned_cols=51 Identities=20% Similarity=0.520 Sum_probs=41.0
Q ss_pred cccccccccCCCc-CcceeeccccccccccCcCCccccccCCCCccccCCccccc
Q 000627 983 SMTLCMCCESDSK-ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 983 ~~~~C~~C~~~~~-~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
....|. |+..++ +..|+.|+.|+.|=|..|+|...... ++.|.|..|....
T Consensus 85 ~~~~c~-c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~--p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 85 EISRCD-CGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK--PDKYVCEICTPRN 136 (508)
T ss_pred cccccc-cccccCCCceeeCCcccCcccCceeeeecCCCC--chhceeeeecccc
Confidence 334576 666666 99999999999999999999985442 7899999999433
No 60
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=54.42 E-value=6 Score=50.11 Aligned_cols=49 Identities=24% Similarity=0.591 Sum_probs=34.6
Q ss_pred CCCccccc-cccccCC-----CcCcceeeccccccccccCcCCccccccCCCCccccCCcccc
Q 000627 979 HGSVSMTL-CMCCESD-----SKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYF 1035 (1383)
Q Consensus 979 ~~~~~~~~-C~~C~~~-----~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~ 1035 (1383)
..|...++ |.+|..+ ...+....|+.|+.+||..|..... . .||.|...
T Consensus 505 ~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s------~--~CPrC~R~ 559 (580)
T KOG1829|consen 505 DLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKS------P--CCPRCERR 559 (580)
T ss_pred hhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccC------C--CCCchHHH
Confidence 34666666 7778543 3356778999999999999965441 1 19999933
No 61
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=52.88 E-value=6.6 Score=49.53 Aligned_cols=44 Identities=23% Similarity=0.671 Sum_probs=35.9
Q ss_pred cccccCC--CcCcceeeccc--cccccccCcCCccccccCCCCccccCCcc
Q 000627 987 CMCCESD--SKELEFLICSA--CKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 987 C~~C~~~--~~~~~~i~Cd~--C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
|++|... -.++.+|.||. |.-.-|+.|.|+..- ..+.|+|..|+
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV---PtGpWfCrKCe 55 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV---PTGPWFCRKCE 55 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcceeEec---CCCchhhhhhh
Confidence 7778554 45799999994 999999999999832 24799999999
No 62
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=52.30 E-value=11 Score=39.65 Aligned_cols=28 Identities=25% Similarity=0.645 Sum_probs=21.6
Q ss_pred eeccccCCCCC--C-CceEcCCCCCCCCCCC
Q 000627 1266 YHIDCVKLLSA--P-EIYICAACKPQAEESS 1293 (1383)
Q Consensus 1266 ~H~~Cvg~~~~--~-~~~~C~~C~~~~~~~~ 1293 (1383)
||..|+..+-. | +.|+||.|.....+.+
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 89999986643 3 7999999997665544
No 63
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.20 E-value=22 Score=46.46 Aligned_cols=126 Identities=20% Similarity=0.378 Sum_probs=72.9
Q ss_pred HHHHHhhhccCCccccCCCChhhHHHHHhcccccccccchhhHHHHHHHHHhHhHHHHHHHHhccccchhhHHHHHHHHH
Q 000627 835 KWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKE 914 (1383)
Q Consensus 835 ~wl~~~~~~lp~c~rS~rp~L~~i~~lL~~lq~i~v~~pe~~~~L~~~ier~~~Wq~r~~~~~~~~~~~~s~~~l~~l~~ 914 (1383)
.|..-.-++|-++.+++|-++-.|+.+|+.--.+.+.+ +.+.| ..|-+.-++.+..-
T Consensus 754 ~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ltls~------IkD~i---i~~l~~~~~~I~qd-------------- 810 (933)
T KOG2114|consen 754 DCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLTLSV------IKDYI---IKWLNKYSTIIEQD-------------- 810 (933)
T ss_pred hHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceEEeh------hHHHH---HHHHHhhhHHHHhh--------------
Confidence 45545557778888888888888888888665555433 33333 34544444444332
Q ss_pred hccccccCchhHHHHHHhhhhhHhHHHHHHhhhccccCCCcchHHHHHHHHHHhhhhhhccCCCCCCccccccccccCCC
Q 000627 915 LGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDS 994 (1383)
Q Consensus 915 ~g~~~~~~~~e~~~~~~~i~~~~~W~~~~~~~~~~~~~~~~sL~~~l~~i~~~l~~~~~~~~~~~~~~~~~~C~~C~~~~ 994 (1383)
. ..+..+..+++++. +-.++++.+..|. +...|..|...-
T Consensus 811 ---~-----~~Ie~yk~~i~e~r-------------------------~~l~~lr~sa~i~-------q~skCs~C~~~L 850 (933)
T KOG2114|consen 811 ---E-----DAIEVYKKDIEEKR-------------------------QELETLRTSAQIF-------QVSKCSACEGTL 850 (933)
T ss_pred ---H-----HHHHHHHHHHHHHH-------------------------HHHHHhhccccee-------eeeeecccCCcc
Confidence 1 11233333443322 2223444444443 235699996653
Q ss_pred cCcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 995 KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 995 ~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
+ -.++. -.|++.||+.|++ .....||.|.
T Consensus 851 d-lP~Vh-F~CgHsyHqhC~e--------~~~~~CP~C~ 879 (933)
T KOG2114|consen 851 D-LPFVH-FLCGHSYHQHCLE--------DKEDKCPKCL 879 (933)
T ss_pred c-cceee-eecccHHHHHhhc--------cCcccCCccc
Confidence 2 11222 4799999999988 3456799999
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.92 E-value=2.9e+02 Score=32.61 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCCCccccchHHHHHHHHHhhHHHHHHHHHhhccCCC-cccHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 000627 387 SELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPA-AIEIDVLYKLESEALDLKIDVPETDMLLKMIG 465 (1383)
Q Consensus 387 ~eLe~Ll~~g~~f~V~lpEl~kLk~rl~~~~~W~~~v~~~L~~~~~~-~~tLeeLr~Ll~ea~~l~v~~Pe~d~L~ell~ 465 (1383)
..+..+.+....++..-+.+..++..++... |.-.....=....+. .-.+..|+..+..+... .-....++++..
T Consensus 90 ~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le-~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~---~e~~~~~~el~a 165 (294)
T COG1340 90 KEYRELKEKRNEFNLGGRSIKSLEREIERLE-KKQQTSVLTPEEERELVQKIKELRKELEDAKKA---LEENEKLKELKA 165 (294)
T ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455555555666566677788888888776 544432210000000 11344455555444432 244467777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCcccccc-HHHHHHHHHHHHHHHHHHHHHH
Q 000627 466 QAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPE-LELLKQYHSDAIFWIARLNDIL 525 (1383)
Q Consensus 466 ~aE~we~kA~~lL~~~~tl~eLe~ll~e~~~lpv~lpe-l~~Lk~~L~ka~~W~~~a~~ll 525 (1383)
.+.....+|..+- ..+..+.++++.+.=.|-+ +...+++-.+|...+..+-...
T Consensus 166 ei~~lk~~~~e~~------eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~ 220 (294)
T COG1340 166 EIDELKKKAREIH------EKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELS 220 (294)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777763 5667777777666555532 3445555555666666665554
No 65
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=44.93 E-value=8.6 Score=35.60 Aligned_cols=43 Identities=19% Similarity=0.596 Sum_probs=26.7
Q ss_pred ccccccCCC----------cCcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 986 LCMCCESDS----------KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 986 ~C~~C~~~~----------~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
.|+||+.+. ++...+.=..|+..||..|+.-=... ...||.|.
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-----NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-----SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-----CCcCCCCC
Confidence 399997654 12344455679999999998533221 22899884
No 66
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=44.74 E-value=10 Score=34.82 Aligned_cols=49 Identities=29% Similarity=0.543 Sum_probs=18.2
Q ss_pred cccccccCCC---cCcceeecc--ccccccccCcCCcc-c-----cccCCCCccccCCcc
Q 000627 985 TLCMCCESDS---KELEFLICS--ACKDCYHLQCLRPT-E-----VDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 985 ~~C~~C~~~~---~~~~~i~Cd--~C~~~YH~~Cv~~~-~-----~~~~~~~~w~C~~C~ 1033 (1383)
.-|.||.... +....+.|+ .|+.-||..|+.-- . ...-......||+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~ 62 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCS 62 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCC
Confidence 4588997653 234568898 99999999997422 1 111223446799998
No 67
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.70 E-value=16 Score=43.74 Aligned_cols=45 Identities=24% Similarity=0.627 Sum_probs=34.6
Q ss_pred cccccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 985 TLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 985 ~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
..|+||......+.-+.==-|++-||..|+.+=... ..-+||-|.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~----~r~~CPvCK 274 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ----TRTFCPVCK 274 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh----cCccCCCCC
Confidence 689999887666666666899999999999865221 134799998
No 68
>PHA02929 N1R/p28-like protein; Provisional
Probab=43.58 E-value=29 Score=39.59 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=30.7
Q ss_pred ccccccccccCCCcCc-----ceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 982 VSMTLCMCCESDSKEL-----EFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 982 ~~~~~C~~C~~~~~~~-----~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
....-|.+|.....+. .+..=..|++.||..|+..-.. ..-.||-|.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-----~~~tCPlCR 223 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-----EKNTCPVCR 223 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-----cCCCCCCCC
Confidence 3456799997753221 1233457999999999864422 123799998
No 69
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=42.00 E-value=36 Score=36.53 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=30.9
Q ss_pred CCeeeecCCCCeeeccccCCCCC---------CCceE--cCCCCCCCCC
Q 000627 1254 KAMIACYQCDEWYHIDCVKLLSA---------PEIYI--CAACKPQAEE 1291 (1383)
Q Consensus 1254 ~~Mi~Cd~C~~W~H~~Cvg~~~~---------~~~~~--C~~C~~~~~~ 1291 (1383)
|.||-|-+|..=||-.|+|.-.. ++.|+ |..|......
T Consensus 15 G~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~k 63 (175)
T PF15446_consen 15 GPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHK 63 (175)
T ss_pred CCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhc
Confidence 88999999999999999998874 25666 9999764443
No 70
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=41.19 E-value=14 Score=30.14 Aligned_cols=26 Identities=38% Similarity=0.954 Sum_probs=22.9
Q ss_pred cccccccccccccccc-ccCCceeeccch
Q 000627 162 CIICRQYLYLSAVACR-CRPAAFVCLEHW 189 (1383)
Q Consensus 162 C~~Ck~~~ylS~v~C~-c~~~~~~CL~H~ 189 (1383)
|..|+..-+|..+.|. | +.++|+.|-
T Consensus 1 C~~C~~~~~l~~f~C~~C--~~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHC--GNLFCGEHR 27 (39)
T ss_pred CcccCCcccccCeECCcc--CCccccccC
Confidence 7889999999889998 7 578999986
No 71
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=40.97 E-value=5.4e+02 Score=28.48 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHh
Q 000627 504 LELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKE 547 (1383)
Q Consensus 504 l~~Lk~~L~ka~~W~~~a~~ll~~~~~~~~~~p~l~eL~~Ll~~ 547 (1383)
+..+.+--..|.++++.+.++|++.-.+.+..-...+|..|...
T Consensus 121 V~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese 164 (209)
T KOG2910|consen 121 VDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESE 164 (209)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 44444445778899999999997432222222334444444443
No 72
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=39.94 E-value=3.1e+02 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhhcCCC
Q 000627 362 LQNYAEEARSLIQEINAALSACSK-ISELELLYSRASGLP 400 (1383)
Q Consensus 362 Lkel~~~~e~~~~e~~~~L~~~~~-~~eLe~Ll~~g~~f~ 400 (1383)
+..+...++.++.+++.++..... ....+..+.++..+.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777665332 234555555555443
No 73
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=39.84 E-value=1.9e+02 Score=34.42 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=24.7
Q ss_pred CccccccccccCC----------CcCcceeeccccccccccC
Q 000627 981 SVSMTLCMCCESD----------SKELEFLICSACKDCYHLQ 1012 (1383)
Q Consensus 981 ~~~~~~C~~C~~~----------~~~~~~i~Cd~C~~~YH~~ 1012 (1383)
....++|.+|++. .++...+.|..|+.-+|..
T Consensus 184 ~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 184 GEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred ccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc
Confidence 3467999999764 2346789999999998864
No 74
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=36.44 E-value=48 Score=41.06 Aligned_cols=53 Identities=9% Similarity=-0.184 Sum_probs=45.4
Q ss_pred hccCCCceEEEeccCCCC-CCeeeecCCCCeeeccccCCCCCCCceEcCCCCCC
Q 000627 1236 SLRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQ 1288 (1383)
Q Consensus 1236 ~~~~~~~~yC~C~~p~~~-~~Mi~Cd~C~~W~H~~Cvg~~~~~~~~~C~~C~~~ 1288 (1383)
.-......||.|++.+.+ ..|.+|..|+.|+|..|++.......++|..|...
T Consensus 165 ~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~~s~~ 218 (464)
T KOG1886|consen 165 LRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQKSEI 218 (464)
T ss_pred ccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceecccccc
Confidence 345566789999999887 45999999999999999999999999999998543
No 75
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=36.01 E-value=25 Score=32.10 Aligned_cols=32 Identities=31% Similarity=0.699 Sum_probs=19.1
Q ss_pred CeeeecC-CCCeeeccccCCCCC--------CCceEcCCCC
Q 000627 1255 AMIACYQ-CDEWYHIDCVKLLSA--------PEIYICAACK 1286 (1383)
Q Consensus 1255 ~Mi~Cd~-C~~W~H~~Cvg~~~~--------~~~~~C~~C~ 1286 (1383)
.||-|.. =+.|.|..|+.+++. ..+|||..=.
T Consensus 29 AMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH~ 69 (78)
T PF13341_consen 29 AMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDHV 69 (78)
T ss_dssp -EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTTT
T ss_pred eEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhhh
Confidence 4999975 459999999999874 3799997644
No 76
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=33.76 E-value=26 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.555 Sum_probs=16.3
Q ss_pred CeeeecCCCCeeeccccCCCC----CCCceEcCCC
Q 000627 1255 AMIACYQCDEWYHIDCVKLLS----APEIYICAAC 1285 (1383)
Q Consensus 1255 ~Mi~Cd~C~~W~H~~Cvg~~~----~~~~~~C~~C 1285 (1383)
..||||.|..|=... .++.. .++.|+|..-
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 479999999997775 33333 2579999763
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=79 Score=38.03 Aligned_cols=48 Identities=19% Similarity=0.538 Sum_probs=36.4
Q ss_pred ceEEEeccCCCCCCeeeecCCCCeeeccccCCCCCCCceEcCCCCCCC
Q 000627 1242 MLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQA 1289 (1383)
Q Consensus 1242 ~~yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~~~~~~C~~C~~~~ 1289 (1383)
..+|||-.-|..|.-+.==-|..=||..||..=-....-+||.|+..-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 368899988887777776789988999999643333456799998743
No 78
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=33.25 E-value=18 Score=34.42 Aligned_cols=30 Identities=30% Similarity=0.745 Sum_probs=24.2
Q ss_pred EEEeccCCCCCCeeeec--CCCCeeeccccCCCC
Q 000627 1244 YCICRKPYDEKAMIACY--QCDEWYHIDCVKLLS 1275 (1383)
Q Consensus 1244 yC~C~~p~~~~~Mi~Cd--~C~~W~H~~Cvg~~~ 1275 (1383)
..+|+++ .|..|+|. .|...||..|.-...
T Consensus 39 C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 39 CSICKKK--GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CcCCCCC--CCeEEEEeCCCCCcEEChHHHccCC
Confidence 4489876 57899998 499999999976544
No 79
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=32.75 E-value=7.6 Score=34.89 Aligned_cols=30 Identities=37% Similarity=0.736 Sum_probs=25.8
Q ss_pred ceEEEeccCCCCCCeeeecCCCCeeeccccCCCC
Q 000627 1242 MLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLS 1275 (1383)
Q Consensus 1242 ~~yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~ 1275 (1383)
..-|.|+. ..||-|-+|+-.-|.+|+|.+.
T Consensus 33 ~~~C~C~L----kAMi~Cq~CGAFCHDDCIgpsk 62 (69)
T PF13922_consen 33 SNKCACSL----KAMIMCQGCGAFCHDDCIGPSK 62 (69)
T ss_pred ccccccch----HHHHHHhhccchhccccccHHH
Confidence 44688887 4799999999999999999765
No 80
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=32.43 E-value=31 Score=40.30 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=40.8
Q ss_pred ceEEEeccCCCC-CCeeeecCCCCeeeccccCCCCCC-CceEcCCCCCCCCCCC
Q 000627 1242 MLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAEESS 1293 (1383)
Q Consensus 1242 ~~yC~C~~p~~~-~~Mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~~~~~~~ 1293 (1383)
+.+|+|-+++.. +.|+.|-.|..|+|....++..-. .+|-|--|....+..+
T Consensus 53 Q~l~sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~s 106 (345)
T KOG2752|consen 53 QALFSCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCS 106 (345)
T ss_pred cceeEeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccccccc
Confidence 669999998875 579999999999999999877654 6788876665544443
No 81
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.34 E-value=15 Score=27.98 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=12.5
Q ss_pred ccccccCCCcCcceeeccccccccccCcC
Q 000627 986 LCMCCESDSKELEFLICSACKDCYHLQCL 1014 (1383)
Q Consensus 986 ~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv 1014 (1383)
.|..|+.+.....+-.|..|+-..|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788887766778889999999998884
No 82
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.48 E-value=2.6e+02 Score=33.25 Aligned_cols=31 Identities=39% Similarity=0.724 Sum_probs=24.0
Q ss_pred ccccccccccCC-----------CcCcceeeccccccccccC
Q 000627 982 VSMTLCMCCESD-----------SKELEFLICSACKDCYHLQ 1012 (1383)
Q Consensus 982 ~~~~~C~~C~~~-----------~~~~~~i~Cd~C~~~YH~~ 1012 (1383)
...++|.+|+.. .++..++.|..|+.-+|..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~ 223 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV 223 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc
Confidence 467899999754 2345789999999998864
No 83
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=31.44 E-value=40 Score=33.39 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=37.7
Q ss_pred ccchhhhcCcccccccc--e-eeCh-----hhHhhCCCceeeeecCCCcEEEecCCc
Q 000627 4 SLPDLFDAQPDLLFQLV--T-MLNP-----SVLVENGVPVYSVLQEPGNFVITFPRS 52 (1383)
Q Consensus 4 ~~P~lf~~~pd~l~~~~--t-~~~P-----~~L~~~gvpv~~~~Q~~gefvitfP~a 52 (1383)
++|.+|...|.+--.-. . .++. ..|.++||++-++.+..|..+|.|..+
T Consensus 23 ALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~ 79 (101)
T PF13721_consen 23 ALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDST 79 (101)
T ss_pred HhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCH
Confidence 57999999998854432 1 1221 358899999999999999999999753
No 84
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.75 E-value=21 Score=35.46 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=24.7
Q ss_pred ceEEEeccCCCCCCeeeecC--CCCeeeccccCC
Q 000627 1242 MLYCICRKPYDEKAMIACYQ--CDEWYHIDCVKL 1273 (1383)
Q Consensus 1242 ~~yC~C~~p~~~~~Mi~Cd~--C~~W~H~~Cvg~ 1273 (1383)
....+|++. .|..|+|.. |..+||..|.-.
T Consensus 56 ~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 56 LKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 345699985 678999997 999999999744
No 85
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=30.13 E-value=12 Score=33.73 Aligned_cols=22 Identities=23% Similarity=0.732 Sum_probs=20.5
Q ss_pred CcceeeccccccccccCcCCcc
Q 000627 996 ELEFLICSACKDCYHLQCLRPT 1017 (1383)
Q Consensus 996 ~~~~i~Cd~C~~~YH~~Cv~~~ 1017 (1383)
-+.||.|-.||...|-.|+||+
T Consensus 40 LkAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 40 LKAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred hHHHHHHhhccchhccccccHH
Confidence 4689999999999999999987
No 86
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=29.31 E-value=1.7e+02 Score=32.55 Aligned_cols=39 Identities=23% Similarity=0.792 Sum_probs=28.7
Q ss_pred EE-EeccC-----CCCCCeeeecCCCCeeeccccCCCCCCCceEcCCCCCC
Q 000627 1244 YC-ICRKP-----YDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQ 1288 (1383)
Q Consensus 1244 yC-~C~~p-----~~~~~Mi~Cd~C~~W~H~~Cvg~~~~~~~~~C~~C~~~ 1288 (1383)
.| +|+.+ ++...-++|+.|.-=||-.|..- -.||.|...
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R~ 198 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCARR 198 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHhH
Confidence 45 77653 33346789999999999999973 229999763
No 87
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=29.25 E-value=37 Score=40.33 Aligned_cols=48 Identities=23% Similarity=0.446 Sum_probs=29.9
Q ss_pred CccccccccccCC--CcC--------cceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 981 SVSMTLCMCCESD--SKE--------LEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 981 ~~~~~~C~~C~~~--~~~--------~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
..++++|.+|... ..+ +..--=--||+.+|..|.+.=.+ +.-.||-|.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-----RqQTCPICr 341 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-----RQQTCPICR 341 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-----hccCCCccc
Confidence 5578999999644 111 00011124888999999764432 234699998
No 88
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=29.09 E-value=36 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.454 Sum_probs=30.5
Q ss_pred cCCCceEE-EeccCCCCCCeeeecCCCCeeeccccCCC---------------CCCCceEcCCCCCCCC
Q 000627 1238 RARSMLYC-ICRKPYDEKAMIACYQCDEWYHIDCVKLL---------------SAPEIYICAACKPQAE 1290 (1383)
Q Consensus 1238 ~~~~~~yC-~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~---------------~~~~~~~C~~C~~~~~ 1290 (1383)
+..+...| ||..+..+... -.|+..|+..|+--- .......||.|+..-.
T Consensus 14 ~~~~~~~CpICld~~~dPVv---T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVV---TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCCccCCccCCCcCCCcEE---cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 33445556 99887654322 357888888887410 0124578999987443
No 89
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=26.30 E-value=6e+02 Score=33.77 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=22.8
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000627 497 FTVNMPELELLKQYHSDAIFWIARLNDILVNI 528 (1383)
Q Consensus 497 lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~~~ 528 (1383)
||-..-...++...+.+..+|..++.+++.+.
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L 55 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGL 55 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566667778889999999988654
No 90
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=26.10 E-value=1.4e+02 Score=28.96 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=23.0
Q ss_pred cccccccccCCCcCcceeeccccccccccCcCC
Q 000627 983 SMTLCMCCESDSKELEFLICSACKDCYHLQCLR 1015 (1383)
Q Consensus 983 ~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~ 1015 (1383)
+...|.+|+.+-+...++. .-|+.-||..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~-~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVV-FPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEE-eCCCeEEeccccc
Confidence 4566999999876643333 3556999999964
No 91
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=25.48 E-value=19 Score=28.58 Aligned_cols=41 Identities=20% Similarity=0.516 Sum_probs=27.2
Q ss_pred cccccCCCcCcceeeccccccccccCcCCccccccCCCCccccCCcc
Q 000627 987 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 987 C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~ 1033 (1383)
|.+|.... ...+.-..|+..||..|+...... ....||.|.
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~----~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS----GKNTCPLCR 42 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh----CcCCCCCCC
Confidence 67776654 233444569999999998654221 456699987
No 92
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.76 E-value=36 Score=33.76 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=25.3
Q ss_pred cccccccccCCCcCcceeeccc--cccccccCcCC
Q 000627 983 SMTLCMCCESDSKELEFLICSA--CKDCYHLQCLR 1015 (1383)
Q Consensus 983 ~~~~C~~C~~~~~~~~~i~Cd~--C~~~YH~~Cv~ 1015 (1383)
-...|.+|+.. ....+.|.. |..+||..|..
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 34669999766 556899999 99999999953
No 93
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=24.48 E-value=26 Score=26.65 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=11.2
Q ss_pred EeccCCCCCCeeeecCCCCeeecccc
Q 000627 1246 ICRKPYDEKAMIACYQCDEWYHIDCV 1271 (1383)
Q Consensus 1246 ~C~~p~~~~~Mi~Cd~C~~W~H~~Cv 1271 (1383)
.|+.+.+++.+-.|..|+-.+|..|+
T Consensus 5 ~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 5 ACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp TTS----S--EEE-TTT-----HHHH
T ss_pred cCCCcCCCCceEECccCCCccChhcC
Confidence 57777665577889999999999884
No 94
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.33 E-value=34 Score=34.09 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=35.6
Q ss_pred CccccccccccCCCcCcceeec------ccc---ccccccCcCCcc----ccccCCCCccccCCccccc
Q 000627 981 SVSMTLCMCCESDSKELEFLIC------SAC---KDCYHLQCLRPT----EVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~C------d~C---~~~YH~~Cv~~~----~~~~~~~~~w~C~~C~~~~ 1036 (1383)
..-+..|.-|++...+.. ..| ..| ...|=+.|+-.- ..++.....|.||.|.-.-
T Consensus 4 ~~~g~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCCCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 344566888988665444 456 666 777888885322 2333456789999999433
No 95
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=24.04 E-value=66 Score=35.56 Aligned_cols=36 Identities=31% Similarity=0.624 Sum_probs=26.5
Q ss_pred CcceeeccccccccccCcCCccccccCCCCccccCCccccc
Q 000627 996 ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1036 (1383)
Q Consensus 996 ~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~ 1036 (1383)
+..-++|..|.. |..|+.+.++. ...|+||+|....
T Consensus 189 ~~~alIC~~C~h--hngl~~~~ek~---~~efiC~~Cn~~n 224 (251)
T COG5415 189 PFKALICPQCHH--HNGLYRLAEKP---IIEFICPHCNHKN 224 (251)
T ss_pred chhhhccccccc--ccccccccccc---chheecccchhhc
Confidence 445678888863 88998887543 3389999999555
No 96
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.64 E-value=50 Score=25.80 Aligned_cols=23 Identities=26% Similarity=0.839 Sum_probs=16.9
Q ss_pred eccccccccccCcCCccccccCCCCccccCCccc
Q 000627 1001 ICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1034 (1383)
Q Consensus 1001 ~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~ 1034 (1383)
+|..||.-|.+.- ..|.||.|-.
T Consensus 3 ~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 3 VCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred ECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 5777877665443 6899999984
No 97
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=21.69 E-value=1e+02 Score=36.57 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCCeeeecCCCCeeeccccCCCCC-CCceEcCCCCCCCCCCC
Q 000627 1253 EKAMIACYQCDEWYHIDCVKLLSA-PEIYICAACKPQAEESS 1293 (1383)
Q Consensus 1253 ~~~Mi~Cd~C~~W~H~~Cvg~~~~-~~~~~C~~C~~~~~~~~ 1293 (1383)
++.-+-|..|. -|..|+...+- .-.|+|+.|...++..+
T Consensus 217 ~ryALIC~~C~--~HNGla~~ee~~yi~F~C~~Cn~LN~~~k 256 (328)
T KOG2846|consen 217 NRYALICSQCH--HHNGLARKEEYEYITFRCPHCNALNPAKK 256 (328)
T ss_pred chhhhcchhhc--cccCcCChhhcCceEEECccccccCCCcC
Confidence 35556788898 48888877443 46899999998877655
No 98
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.40 E-value=1.8e+03 Score=28.49 Aligned_cols=54 Identities=17% Similarity=0.371 Sum_probs=35.9
Q ss_pred hhHHHHHhccccCccccchh-HHHHHHHHHHHhHHHHHHHHHHhh-hh--hhc-cCCCC
Q 000627 690 ESLKDLVSQSKFLKISLKEQ-TELEKVINNCERWQNHASSLLQDA-RC--LLD-KDDIG 743 (1383)
Q Consensus 690 edL~~Lv~~~~~lpV~lee~-~~Le~~i~~a~~W~e~a~~fL~~s-~~--Lle-~~~~~ 743 (1383)
+.+..|.......|+-++.+ .+|+........-.+.+...+.++ .+ +++ .+|-+
T Consensus 451 ~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR 509 (560)
T PF06160_consen 451 DEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYR 509 (560)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455566666788888774 667777777788888888888764 33 555 45543
No 99
>PHA03247 large tegument protein UL36; Provisional
Probab=20.91 E-value=3.4e+03 Score=31.42 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=66.2
Q ss_pred HhhhhhhhhhhhhhccccCCCCCCCccccHHHHhhhhcCCCCCCCCCchHHHHHHHHH----HHHHHHHHHHHHhcCCCH
Q 000627 311 RRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEE----ARSLIQEINAALSACSKI 386 (1383)
Q Consensus 311 ~~W~e~a~~c~s~~q~~~~~~~~~~~kl~l~eL~~ll~~~~lpc~~pe~~~Lkel~~~----~e~~~~e~~~~L~~~~~~ 386 (1383)
+.|...+..|+.++... -. |+--|+.-|++++.. ...|..+++.+|.. +.
T Consensus 1318 erW~~dv~AaL~r~Etr--------se----------------FDa~EL~RLrd~Aa~~gYd~~~f~krAeqalaA--~a 1371 (3151)
T PHA03247 1318 ERWAADVEAALDRVENR--------AE----------------FDAVELRRLQALAATHGYNPRDFRKRAEQALAA--NA 1371 (3151)
T ss_pred HHHHHHHHHHHHHHhhh--------hh----------------ccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH--hH
Confidence 45888888888777651 12 333444455665554 67888999998874 44
Q ss_pred HHHHHHHHhhcCCCccccchHHHH-----HHHHHhhHHHHHHHHH---hhccCCCcccHHHHHHHHHH
Q 000627 387 SELELLYSRASGLPICIVESEKLS-----QRISSAKVWRDSVRKC---ISNKCPAAIEIDVLYKLESE 446 (1383)
Q Consensus 387 ~eLe~Ll~~g~~f~V~lpEl~kLk-----~rl~~~~~W~~~v~~~---L~~~~~~~~tLeeLr~Ll~e 446 (1383)
.....-|+....||=|-||=.... .-+.+.. |-+..--+ +.... .++.|.|-.|+.-
T Consensus 1372 ~~~~~ALe~v~~FNPYtpeN~~~~~~PPla~L~~it-W~daF~~AAp~~~~LF--gVdve~L~~LmrI 1436 (3151)
T PHA03247 1372 KTATLALEAAFAFNPYTPENQRHPMLPPLAAIHRID-WGPAFGAAAETYAEMF--RVDTEPLARLLRL 1436 (3151)
T ss_pred HHHHHHHHHHHhcCCCCccccCCCCCCcHHHHhcCc-hHhhhhhhHHHHHHHh--cccHHHHHHHHHH
Confidence 566777888888998887754422 2344444 88776432 22222 2566666666543
No 100
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=20.38 E-value=41 Score=32.24 Aligned_cols=40 Identities=18% Similarity=0.606 Sum_probs=24.0
Q ss_pred ccCCCcCcceeeccccccccccCcCC-ccccccCCCCccccCCcc
Q 000627 990 CESDSKELEFLICSACKDCYHLQCLR-PTEVDRNHAEAYICPYCQ 1033 (1383)
Q Consensus 990 C~~~~~~~~~i~Cd~C~~~YH~~Cv~-~~~~~~~~~~~w~C~~C~ 1033 (1383)
|+.|.++-.++ -..|+..||..|+. +.... ...-.||.|.
T Consensus 38 Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~---~~~~~CPmCR 78 (85)
T PF12861_consen 38 CKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQ---SSKGQCPMCR 78 (85)
T ss_pred ccCCCCCCcee-eccCccHHHHHHHHHHHccc---cCCCCCCCcC
Confidence 33333333444 44599999999964 33322 1234899998
Done!