Query 000627
Match_columns 1383
No_of_seqs 555 out of 1697
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:50:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000627.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_398-402//hhsearch_pdb/000627hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3avr_A Lysine-specific demethy 1.0 1 1 249.0 13.4 199 12-220 315-522 (531)
2 2ox0_A JMJC domain-containing 1.0 1 1 228.8 1.9 103 1-104 245-347 (381)
3 3dxt_A JMJC domain-containing 1.0 1 1 224.4 0.6 103 1-104 227-329 (354)
4 3opt_A DNA damage-responsive t 1.0 1 1 221.3 3.7 83 1-83 270-352 (373)
5 4ask_A Lysine-specific demethy 1.0 1 1 193.0 14.4 201 11-220 289-497 (510)
6 2xxz_A Lysine-specific demethy 1.0 1 1 153.5 4.5 74 12-87 256-329 (332)
7 3kv4_A PHD finger protein 8; e 1.0 1 1 120.4 -3.1 61 983-1043 4-64 (447)
8 3kv5_D JMJC domain-containing 1.0 1 1 117.3 0.7 63 981-1043 34-96 (488)
9 3o70_A PHD finger protein 13; 1.0 1 1 109.4 1.4 57 1232-1288 9-67 (68)
10 1wem_A Death associated transc 1.0 1 1 108.5 -2.3 53 1238-1290 12-72 (76)
No 1
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=1.00 E-value=1 Score=249.03 Aligned_cols=199 Identities=19% Similarity=0.174 Sum_probs=158.8
Q ss_pred CCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 93211253300092457647984265302898289963886444445663100111258988634410226999872---
Q 000627 12 QPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQY--- 88 (1383)
Q Consensus 12 qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl~~g~~~~~~y~~~--- 88 (1383)
.+|++ +..++.+|+.|.++|||||+++|+||+||||||+|||+|||+|||++||+||||++|++++. ++++|+..
T Consensus 315 ~~~~~-~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~~~-A~e~y~~Nk~~ 392 (531)
T 3avr_A 315 NLNFL-MGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKL-AVERYEWNKLQ 392 (531)
T ss_dssp TCCTT-TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSHHHHHH-HHHHHHHHHHH
T ss_pred CCCHH-HCEEECCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHHHHC
T ss_conf 98721-14430688999867997599997789889989984378874534546578705686677999-99999986440
Q ss_pred CCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2767899699999984102--79780679999999999999999999986085432357999899887887753233346
Q 000627 89 HKAAVLSHEELLCVVAKSD--LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICR 166 (1383)
Q Consensus 89 ~r~~~fsh~eLl~~~a~~~--~~~~~~~~l~~~l~~~~~~E~~~R~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~C~~Ck 166 (1383)
+..++|++++|++++|..- .|..+...+...|.+.+..+..+|+.+.+.|+.. . ...+ ...++.+.|..|+
T Consensus 393 ~~~sivp~~~L~wn~a~~~~~~d~~l~~~ik~~L~rsl~~~~~~~~~l~~~g~~i-~-~~~~-----~~~~~~~~C~~C~ 465 (531)
T 3avr_A 393 SVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEI-I-WHGR-----TKEEPAHYCSICE 465 (531)
T ss_dssp TCCCSSCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE-E-ECCC-----CTTCCCEECTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE-E-ECCC-----CCCCCCEECCCCC
T ss_conf 5788788899999988655026699999999999999999999999998679778-7-6465-----6788881622261
Q ss_pred CCCCCCCCCCCCC----CCCEEECCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 4431100226646----99224322412240597996189996599999999999720
Q 000627 167 QYLYLSAVACRCR----PAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 220 (1383)
Q Consensus 167 ~~~flS~v~C~c~----~~~~~CL~H~~~lc~C~~~~~~L~yRy~~~eL~~lv~~l~~ 220 (1383)
+.||.+.++|..+ ...+.|++|+...+.| .++.+++|||+++||.++++++..
T Consensus 466 ~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~~~-l~~~~v~~ry~~eeL~~~yd~f~~ 522 (531)
T 3avr_A 466 VEVFDLLFVTNESNSRKTYIVHCQDCARKTSGN-LENFVVLEQYKMEDLMQVYDQFTL 522 (531)
T ss_dssp CEECSEEEEEECTTCSSEEEEECHHHHHHHCTT-CTTCEEEECSCHHHHHHHHHTCCC
T ss_pred HHHEEEEEEEECCCCCCCCCCCCHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHEEE
T ss_conf 121211778725777787883986446304835-045489997589999999975473
No 2
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=1.00 E-value=1 Score=228.77 Aligned_cols=103 Identities=32% Similarity=0.555 Sum_probs=90.6
Q ss_pred CCCCCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
Q ss_conf 92424304310932112533000924576479842653028982899638864444456631001112589886344102
Q 000627 1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGF 80 (1383)
Q Consensus 1 m~~~~P~lf~~qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl~~g~~ 80 (1383)
||+.+|++|.+||+||+|+++|++|+.|.++|||||+++|+|||||||||+|||+|||+||||+||||||+++|+++|..
T Consensus 245 ~~~~~P~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~ 324 (381)
T 2ox0_A 245 AKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQ 324 (381)
T ss_dssp HHHHSHHHHHHCTTGGGGSCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHH
T ss_pred HHHHCHHHHHCCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 99867354420557763554045999998779964898756998899888737876427623877752473778887676
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 269998722767899699999984
Q 000627 81 GADLYQQYHKAAVLSHEELLCVVA 104 (1383)
Q Consensus 81 ~~~~y~~~~r~~~fsh~eLl~~~a 104 (1383)
+.+.+... ..-.++++.++.++-
T Consensus 325 a~~c~c~~-~~v~i~~d~~~~~~~ 347 (381)
T 2ox0_A 325 AVLCSCRK-DMVKISMDVFVRKFQ 347 (381)
T ss_dssp CCCCCSST-TCCCCCCHHHHHHHC
T ss_pred HHHCCCCC-CCEEECHHHHHHHHC
T ss_conf 65255657-731314999998738
No 3
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=1.00 E-value=1 Score=224.40 Aligned_cols=103 Identities=35% Similarity=0.670 Sum_probs=89.7
Q ss_pred CCCCCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
Q ss_conf 92424304310932112533000924576479842653028982899638864444456631001112589886344102
Q 000627 1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGF 80 (1383)
Q Consensus 1 m~~~~P~lf~~qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl~~g~~ 80 (1383)
|++.+|++|..||+||+|++++++|+.|.++|||||+++|+|||||||||+|||+|||+||||+||||||+++||++|..
T Consensus 227 ~k~~~p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~ 306 (354)
T 3dxt_A 227 ARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKM 306 (354)
T ss_dssp HHHHSHHHHHHCTTGGGGCCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHH
T ss_pred HHHHCCHHHHHCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHHHHHHHHH
T ss_conf 99867212210578873675447999998779961898867995899888736777636514767545586778876230
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 269998722767899699999984
Q 000627 81 GADLYQQYHKAAVLSHEELLCVVA 104 (1383)
Q Consensus 81 ~~~~y~~~~r~~~fsh~eLl~~~a 104 (1383)
|..-... .....||+|.++..+-
T Consensus 307 A~~C~C~-~~~v~i~~d~~~~~~~ 329 (354)
T 3dxt_A 307 ASQCSCG-EARVTFSMDAFVRILQ 329 (354)
T ss_dssp CCCCCSS-SCCCCHHHHHHHHHHC
T ss_pred CCCCCCC-CCCCEECHHHHHHHHC
T ss_conf 4036355-7663363999988638
No 4
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=1.00 E-value=1 Score=221.35 Aligned_cols=83 Identities=39% Similarity=0.768 Sum_probs=80.4
Q ss_pred CCCCCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
Q ss_conf 92424304310932112533000924576479842653028982899638864444456631001112589886344102
Q 000627 1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGF 80 (1383)
Q Consensus 1 m~~~~P~lf~~qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl~~g~~ 80 (1383)
|++.+|++|..||+||+|+++|++|+.|.++|||||+++|+|||||||||+|||+|||+||||+||||||+++||++|..
T Consensus 270 ~k~~~p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~ 349 (373)
T 3opt_A 270 MQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKK 349 (373)
T ss_dssp HHHSSHHHHSSCSSCTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC--------
T ss_pred HHHHCHHHHHHCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHHHHHHHCC
T ss_conf 99867154430778861775558999998669962898877997899878835889866722988874483777876251
Q ss_pred HHH
Q ss_conf 269
Q 000627 81 GAD 83 (1383)
Q Consensus 81 ~~~ 83 (1383)
+..
T Consensus 350 a~~ 352 (373)
T 3opt_A 350 AGK 352 (373)
T ss_dssp ---
T ss_pred CCC
T ss_conf 765
No 5
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=1.00 E-value=1 Score=193.05 Aligned_cols=201 Identities=17% Similarity=0.089 Sum_probs=153.8
Q ss_pred CCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCC--CCCHHHHHHHHHH
Q ss_conf 09321125330009245764798426530289828996388644444566310011125898863--4410226999872
Q 000627 11 AQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWL--PHGGFGADLYQQY 88 (1383)
Q Consensus 11 ~qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl--~~g~~~~~~y~~~ 88 (1383)
..+|+++ ...+.+|+.|.++|||||+++|+|||||||||++||.|||+||++++|+||||++|. ..+.++.++|+..
T Consensus 289 ~~~d~l~-~~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~qlqlA~e~y~~n~~~ 367 (510)
T 4ask_A 289 HGVDYLT-GSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVK 367 (510)
T ss_dssp TTCCTTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHH-CCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 4812565-151589999975899769999889988998998247898667001467873589889999999999999984
Q ss_pred CCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2767899699999984102--79780679999999999999999999986085432357999899887887753233346
Q 000627 89 HKAAVLSHEELLCVVAKSD--LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICR 166 (1383)
Q Consensus 89 ~r~~~fsh~eLl~~~a~~~--~~~~~~~~l~~~l~~~~~~E~~~R~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~C~~Ck 166 (1383)
+..++|++++|+++||..- .|.++...++..|.+-...-...++.+...|..- ....+. .++....|..|.
T Consensus 368 ~~~SivPm~~L~Wn~Ar~~k~~d~~l~~liK~~L~rSL~~~~~~~d~~~~~g~~i--~~~~~~-----~~~~~~~C~~C~ 440 (510)
T 4ask_A 368 NVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKI--AYQGRV-----KDEPAYYCNECD 440 (510)
T ss_dssp TCCCSSCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE--EECCCC-----TTCCCEECTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EECCCC-----CCCCCCCCCCCC
T ss_conf 9686357599999987521015989999999999999999999999998679788--655868-----887666668998
Q ss_pred CCCCCCCCCCCCC--CC--CEEECCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 4431100226646--99--224322412240597996189996599999999999720
Q 000627 167 QYLYLSAVACRCR--PA--AFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 220 (1383)
Q Consensus 167 ~~~flS~v~C~c~--~~--~~~CL~H~~~lc~C~~~~~~L~yRy~~~eL~~lv~~l~~ 220 (1383)
.-.|-=-.+-..+ ++ .+.|+.++..... .-.+.+.+++|++++|..+...+..
T Consensus 441 ~evFn~l~v~~~~~~~~~~~v~C~~Ca~~~~~-~~~~~~vl~~y~~~~L~~iyD~f~l 497 (510)
T 4ask_A 441 VEVFNILFVTSENGSRNTYLVHCEGCARRRSA-GLQGVVVLEQYRTEELAQAYDAFTL 497 (510)
T ss_dssp CEECSEEEEEECC----CEEEECHHHHHHSTT-TTTTCEEEESSCHHHHHHHHHHCCC
T ss_pred EEEEEEEEEEECCCCCCCCCEECHHHHHHCCC-CCCEEEEEEECCHHHHHHHHHCEEE
T ss_conf 47788899970378877533388675411378-7654899997219999998747284
No 6
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=153.55 Aligned_cols=74 Identities=22% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9321125330009245764798426530289828996388644444566310011125898863441022699987
Q 000627 12 QPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQ 87 (1383)
Q Consensus 12 qpd~l~~l~t~i~P~~L~~~GVpv~~~~Q~pgefVitfP~ayh~gfn~Gfn~~EaVnFa~~~Wl~~g~~~~~~y~~ 87 (1383)
.+|+++ ..++++|+.|.++||||||++|+||+||||||+|||+|||+|||++||+||||++|+.+ ..++++|+-
T Consensus 256 ~~d~~~-~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q~-~~a~erye~ 329 (332)
T 2xxz_A 256 GVDYLT-GSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQY-QLALERYEW 329 (332)
T ss_dssp TCCTTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTGGG-GGC------
T ss_pred CCCHHH-CEECCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCCHHHH-HHHHHHHHH
T ss_conf 976321-50217899997689975999977998899899852778745412477797178867899-999999876
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=120.38 Aligned_cols=61 Identities=21% Similarity=0.530 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6643443468876753265032222334576776622458997521687644444311114
Q 000627 983 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQF 1043 (1383)
Q Consensus 983 ~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~~~~~~~ 1043 (1383)
...+|+|.+.++++.+||+||.|++|||+.|||++...+...+.|+||.|.........+.
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~k~ 64 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKK 64 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEECC
T ss_pred CCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCC
T ss_conf 7859867993799997587678886414013786701004799899989866347720011
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=117.30 Aligned_cols=63 Identities=22% Similarity=0.520 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 866643443468876753265032222334576776622458997521687644444311114
Q 000627 981 SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQF 1043 (1383)
Q Consensus 981 ~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~C~~C~~~~~~~~~~~ 1043 (1383)
.....+|+|.+.++.+.+||+||.|++|||+.|||++.......+.|+|+.|......+..++
T Consensus 34 ~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~k~ 96 (488)
T 3kv5_D 34 PPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKK 96 (488)
T ss_dssp CCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEECC
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCHHCC
T ss_conf 888748767996799987687468887564210675744346888798899867768502002
No 9
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=1.00 E-value=1 Score=109.39 Aligned_cols=57 Identities=30% Similarity=0.948 Sum_probs=49.1
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCC--CCCEECCCCCCC
Q ss_conf 664211599823888355889988166147997135224677789--991571888788
Q 000627 1232 KELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--PEIYICAACKPQ 1288 (1383)
Q Consensus 1232 ~e~~~~~~~~~~yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~--~~~~~C~~C~~~ 1288 (1383)
.+.+...+.+.+||+|++|+++++|||||.|++|||+.|||++.. ++.|+|+.|...
T Consensus 9 ~~~~~~~~~~~~~CiC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 9 SGRENLYFQGLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp -----CTTTTCCCSTTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 65455789986586799957998878889888525314368676569985899788888
No 10
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=108.50 Aligned_cols=53 Identities=43% Similarity=1.003 Sum_probs=45.7
Q ss_pred CCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCC--------CCCEECCCCCCCCC
Q ss_conf 599823888355889988166147997135224677789--------99157188878877
Q 000627 1238 RARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--------PEIYICAACKPQAE 1290 (1383)
Q Consensus 1238 ~~~~~~yC~C~~p~~~~~Mi~Cd~C~~W~H~~Cvg~~~~--------~~~~~C~~C~~~~~ 1290 (1383)
.|.+.+||+|++|+++++|||||.|++|||+.|||++.. ++.|+|+.|.....
T Consensus 12 ~d~~~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 12 YDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCTTCCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCCEEECCCCCCCCCEEEECCCCCCEECEEECCCHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 5898788778981699777883899984857687524055443348999599968768567
Done!