Query 000628
Match_columns 1383
No_of_seqs 534 out of 5992
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 18:30:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000628.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_398-402//hhsearch_pdb/000628hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 671.0 57.8 772 182-1093 429-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 607.8 61.0 776 183-1092 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 463.3 33.5 437 185-1095 106-561 (607)
4 3ux8_A Excinuclease ABC, A sub 1.0 1 1 452.9 36.2 215 183-432 30-297 (670)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 452.8 41.9 427 184-1091 448-981 (986)
6 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 452.4 33.3 437 185-1095 36-491 (538)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 441.9 32.4 203 881-1106 282-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 432.5 29.5 201 881-1106 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 349.1 34.1 197 882-1093 599-898 (916)
10 4f4c_A Multidrug resistance pr 1.0 1 1 348.4 20.3 215 852-1093 413-637 (1321)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=670.96 Aligned_cols=772 Identities=19% Similarity=0.256 Sum_probs=396.2
Q ss_pred CCCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCC
Q ss_conf 55246440178893884999985999977999999953939999840299997950798777---633999547998899
Q 000628 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1383)
Q Consensus 182 ~~~~IL~~vSg~i~pG~ltailGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~ 258 (1383)
+..++|+|+|+.++||++++|+||+|||||||+++|.|.+++. +|+|.+||+++.+... ++.++||+|+++++.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEEC
T ss_conf 9874333318862288278998058985778888754565164---4861579965011259998504666587533207
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999972010377712567799559988619999911899999998501110346999998809953235433574
Q 000628 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1383)
Q Consensus 259 ~lTVrEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~ 338 (1383)
.||||||.|+. |+.+.+++.+|+..++.+.. +..|+++.||.||+
T Consensus 506 -~TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~~--------i~~lp~G~~T~vGe- 550 (1321)
T 4f4c_A 506 -CTIEENISLGK-------------------------EGITREEMVAACKMANAEKF--------IKTLPNGYNTLVGD- 550 (1321)
T ss_dssp -EEHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHHH--------HHHSTTTTSSEESS-
T ss_pred -CCHHHHHHHHC-------------------------CCCHHHHHHHHHHHCCCHHH--------HHCCCCCCCCEECC-
T ss_conf -86167886415-------------------------52209999999987565468--------87088888607558-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEC
Q ss_conf 56777967879999999995399784983798799999999999999999881896599998149104985249399973
Q 000628 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1383)
Q Consensus 339 ~~rGLSGGQKkRvsia~aLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs 418 (1383)
.+..||||||||++||||++.+|++++||||||+||+.++..|.++|+++.+ ++|+|+..|+. ++...+|+|++|.
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNADLIISCK 626 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf 9887777787999999987259998998455446887899999999999847--98899973638--7898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHH--HHCCCCCHHHH--HHHCCC---------CCC--CCCHHHHHH
Q ss_conf 982899649567999998649878999996-67997--52372001245--640499---------987--799658999
Q 000628 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGV-ADFLQ--EVTSKKDQEQY--WFRKNQ---------PYR--YIPVSDFVE 482 (1383)
Q Consensus 419 ~G~ivy~Gp~~~~~~~F~~lGf~~p~~~~~-adfl~--ev~s~~~~~~~--~~~~~~---------~~~--~~~~~~f~~ 482 (1383)
+|+|+++|+++++++- .+. ++... ......+.... ...... ... ....++...
T Consensus 627 ~G~ive~Gth~eL~~~-----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ-----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMN 695 (1321)
T ss_dssp TTEEEEEECHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred CCEEECCCCHHHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 9965136899999985-----------32799999962212222332334433223211122222342222222110221
Q ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCCCC----------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9971700055885303977765679876----------556766775999999999999999821938999999999999
Q 000628 483 GFKSFHMGQQIASDLRVPYDKSQAHPAS----------LVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 552 (1383)
Q Consensus 483 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ 552 (1383)
..+.+......... ..+........ ........+.+..++ ..+..+..++...+..++.
T Consensus 696 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~ 764 (1321)
T 4f4c_A 696 RVRSSTIGSITNGP---VIDEKEERIGKDALSRLKQELEENNAQKTNLFEILY--------HARPHALSLFIGMSTATIG 764 (1321)
T ss_dssp -----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHH--------HTGGGHHHHHHHHHHHHHG
T ss_pred HHHCCCCCCCCCCC---CHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 11013212456774---025777531540389999999970786310999999--------9877899999999999999
Q ss_pred HHH--HHHHHH----CCC-CCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999--877540----345-776787885204678999999999--97799999986112476661027654235588989
Q 000628 553 SLI--CMTVYF----RTE-MSVGDMNGGSRYFGALFFSLLNIM--FNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPI 623 (1383)
Q Consensus 553 ali--~gtvf~----~~~-~~~~~~~~~~~~~g~lff~ll~~~--f~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~ 623 (1383)
+.+ ...+++ ... .+.........++..+|+.+.... +..+...........+
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~------------------- 825 (1321)
T 4f4c_A 765 GFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESL------------------- 825 (1321)
T ss_dssp GGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_conf 9999999999999998751793455667899999999999999999999999999999999-------------------
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCHHHHHHHH--HH
Q ss_conf 999711999989999888877048872187999999999999998---------9999999988305647788899--99
Q 000628 624 WLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNM---------SLPLYRLVAAVGRTEVISNTLG--TF 692 (1383)
Q Consensus 624 ~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~---------~~~lf~~iaa~~~~~~~a~~~~--~~ 692 (1383)
..++-..++..++...+.||-. -....++....+......... ...++.+++.+.-.......++ .+
T Consensus 826 -~~~lr~~l~~~il~~~~~ffd~-~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l 903 (1321)
T 4f4c_A 826 -TRDLRNKLFRNVLSQHIGFFDS-PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLII 903 (1321)
T ss_dssp -HHHHHHHHHHHHHTSCSSSTTS-GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCCHHHCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
T ss_conf -9999999988873499333216-78884888850250599999999999999999865377770221378689999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC--
Q ss_conf 999999976402246984235799997819999999999997408844457899887555422001002474345730--
Q 000628 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNW-- 770 (1383)
Q Consensus 693 ~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~-- 770 (1383)
++++++++..++..+..........- .++.......|.. .|...+..++ .+..+
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~e~l-----------------~gi~tIra~~--~e~~~~~ 959 (1321)
T 4f4c_A 904 AILPIVAFGQYLRGRRFTGKNVKSAS-----EFADSGKIAIEAI-----------------ENVRTVQALA--REDTFYE 959 (1321)
T ss_dssp HHHHHHHHHHHHHTSCCSSCSTTTSS-----HHHHHHHHHHHHH-----------------HTHHHHHHTT--THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----------------HHHHHHHHCC--CHHHHHH
T ss_conf 98889999999999999999999999-----9888988999999-----------------6279888614--1488999
Q ss_pred -----------------HHHH--HHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCE-------------------EECCCC
Q ss_conf -----------------5567--8999999-999999999999804878999840-------------------430211
Q 000628 771 -----------------YWIG--VGALTGY-SFLFNFLFIAALAYLNPIGDSNST-------------------VIEEDG 811 (1383)
Q Consensus 771 -----------------~w~~--~g~l~~~-~~~f~~l~~l~l~~~~~~~~~~~~-------------------~~~~~~ 811 (1383)
.+.+ .+..... .+...+.++++............. ......
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1039 (1321)
T 4f4c_A 960 NFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFP 1039 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999987578875376542147899999999877889999999999
Q ss_pred HHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEEEEEE
Q ss_conf 12210474000012211145544555434456764455678277983330146335321235656666067201046884
Q 000628 812 EKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFR 891 (1383)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 891 (1383)
...... ............ ..........+ ..+.....++|+|+++.++..+ ...+|+|+|+.++
T Consensus 1040 ~~~~~~-~a~~ri~~~l~~----~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~~----------~~~VL~~isl~I~ 1103 (1321)
T 4f4c_A 1040 EYAKAT-FAGGIIFGMLRK----ISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERP----------EIEILKGLSFSVE 1103 (1321)
T ss_dssp HHHHHH-HHHHHHHHHHHC----CCSSCTTCCCS-BCCCCCCCEEEEEEEECCTTSC----------SSCSEEEEEEEEC
T ss_pred HHHHHH-HHHHHHHHHHHC----CCCCCCCCCCC-CCCCCCCEEEEEEEEEECCCCC----------CCCCCCCEEEEEC
T ss_conf 999999-999989998607----66577766778-7888888189998798579999----------8821245169988
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC---HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7809999646999278899524289778637999999590388---1100224899714897899999999999878741
Q 000628 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1383)
Q Consensus 892 pG~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr 968 (1383)
|||.+||+|+||||||||+++|.|... +.+|+|.+||.+.. ...+|+.++||+|++.++.. |++||+.|..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gl--- 1177 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGL--- 1177 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSS---
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECC-CHHHHHHCCC---
T ss_conf 989999989999819999999956863--8997899999986549999998545998789973272-3999974549---
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH
Q ss_conf 59998489999999999998299554-------33334699877789999999999999962999711408999999999
Q 000628 969 LSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1383)
Q Consensus 969 ~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~~ 1041 (1383)
.+.+.+ ++.++++++..++.+. .|+.+|..|. .||||||||++|||+|+++|+||+||||||+||+++
T Consensus 1178 d~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1178 DPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp CTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred CCCCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 999999----999999999829849997176789998238891-569999999999999971799899968111578999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999885898899995687199998626187992695999925898
Q 000628 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1383)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~ 1093 (1383)
...|++.|++.. +|+|+|+++|+++ ....+|++++|. +|+++..|++.
T Consensus 1253 E~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1253 EKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECHH
T ss_pred HHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 999999999973-9998999606899--999699999998-98999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=607.80 Aligned_cols=776 Identities=19% Similarity=0.232 Sum_probs=377.0
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5246440178893884999985999977999999953939999840299997950798777---6339995479988999
Q 000628 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1383)
Q Consensus 183 ~~~IL~~vSg~i~pG~ltailGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~ 259 (1383)
..++|+|+|+.++||+.++|+||+|||||||+++|+|.+++. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCC
T ss_conf 871012545897599889998999997999999980788999---73899999987757999998654898688753776
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999720103777125677995599886199999118999999985011103469999988099532354335745
Q 000628 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1383)
Q Consensus 260 lTVrEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~ 339 (1383)
||+||+.|+..- .+.++..+++..++. .+. +..|++..||.+|+ .
T Consensus 479 -ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~~-----~~~---i~~l~~g~~t~~~~-~ 523 (1284)
T 3g5u_A 479 -TIAENIRYGRED-------------------------VTMDEIEKAVKEANA-----YDF---IMKLPHQFDTLVGE-R 523 (1284)
T ss_dssp -CHHHHHHHHCSS-------------------------CCHHHHHHHHHHTTC-----HHH---HHHSTTGGGCCCSS-S
T ss_pred -CHHHHHHCCCCC-------------------------CCHHHHHHHHHHHCC-----HHH---HHHCCCCCCCCCCC-C
T ss_conf -699997457989-------------------------999999999998296-----999---97465633450147-8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECC
Q ss_conf 67779678799999999953997849837987999999999999999998818965999981491049852493999739
Q 000628 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1383)
Q Consensus 340 ~rGLSGGQKkRvsia~aLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~ 419 (1383)
+..||||||||++||||++.+|++++||||||+||+.++..+.+.++...+ ++|+++..|.. ++...+|+|++|.+
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l--~~i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRL--STVRNADVIAGFDG 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCH--HHHTTCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHCCCEEEEEEC
T ss_conf 786599999999999999529998999798777799999999999999739--99899994077--89974998999989
Q ss_pred CEEEEECCHHHHHH----HHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 82899649567999----99864987899999667997523720012456404999877996589999971700055885
Q 000628 420 GQIVYQGPRDNVLE----FFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (1383)
Q Consensus 420 G~ivy~Gp~~~~~~----~F~~lGf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~ 495 (1383)
|+++++|+++++++ |++-.--..... . .+...+.....+... ....+. .......... +.. ..
T Consensus 600 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~-~~~------~~ 666 (1284)
T 3g5u_A 600 GVIVEQGNHDELMREKGIYFKLVMTQTAGN-E-IELGNEACKSKDEID---NLDMSS-KDSGSSLIRR-RST------RK 666 (1284)
T ss_dssp SCCCCEECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------
T ss_pred CEEEEECCHHHHHHCCCHHHHHHHHHHHCC-C-CCCCCCCCCCCCCCC---CCCCCC-CCCCCCCCCC-CCC------CC
T ss_conf 999997889999867877999999743002-2-111333333222223---443333-3333200034-543------33
Q ss_pred HHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHH---HHHCC
Q ss_conf 30397776--56798765567667759999999999999998219389999999999-------99999877---54034
Q 000628 496 DLRVPYDK--SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT-------FMSLICMT---VYFRT 563 (1383)
Q Consensus 496 ~l~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~-------i~ali~gt---vf~~~ 563 (1383)
....+.+. ...............+.+..++. . +..+..++...+..+ +.+.+.+. .+...
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKL-N-------STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHH-H-------HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH-H-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 445642233211024555313662589999998-4-------51579999999999999999999999999999998556
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 57767878852046789999999999779999998611247666102765423558898999971199998999988887
Q 000628 564 EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTY 643 (1383)
Q Consensus 564 ~~~~~~~~~~~~~~g~lff~ll~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y 643 (1383)
. . .........++.++...+.....+..... .-.+ ...-..+..++-..++..+....+.|
T Consensus 739 ~----~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~------------~~~~~~~~~~lr~~l~~~ll~~~~~f 799 (1284)
T 3g5u_A 739 G----P--PETQRQNSNLFSLLFLILGIISFITFFLQ-GFTF------------GKAGEILTKRLRYMVFKSMLRQDVSW 799 (1284)
T ss_dssp C----S--TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred C----C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 8----5--03367799999999999999999999999-9999------------99999999999999999998399888
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH--H-----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 704887218799999999999999899--9-----------999998830564778889999999999976402246984
Q 000628 644 YTIGYDPAASRFFKQFLAFFSIHNMSL--P-----------LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDI 710 (1383)
Q Consensus 644 ~~~g~~~~~~~ff~~~l~~~l~~~~~~--~-----------lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~i 710 (1383)
|-. -....++....+........... . ...++..+.-+...+. ..++.++++++.+++
T Consensus 800 f~~-~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~~~~~~------ 870 (1284)
T 3g5u_A 800 FDD-PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIAIAGVV------ 870 (1284)
T ss_dssp HHS-CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHHHHHHH------
T ss_pred HCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH------
T ss_conf 757-89988999999999999999999999999999999999999999999699999--999999999999999------
Q ss_pred HHHHHHHHHHCH------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-------CCCHHHHHHH
Q ss_conf 235799997819------999999999997408844457899887555422001002474345-------7305567899
Q 000628 711 EPFLRWGYYISP------MMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTE-------SNWYWIGVGA 777 (1383)
Q Consensus 711 p~~~~W~~~isp------~~Y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~-------~~~~w~~~g~ 777 (1383)
...++.. -.+...+-...|....-......+ ......+.+.-... ....|.+ .
T Consensus 871 -----~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~-------~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 936 (1284)
T 3g5u_A 871 -----EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT-------REQKFETMYAQSLQIPYRNAMKKAHVFG--I 936 (1284)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf -----9999999999999999999999999998899999846-------5999999999999999999999999999--9
Q ss_pred HHHHHHHHH-HHHHHHHH---HCCCCCCCC-C-EEECCC---------CHHHHCCCC------CCCCHHHHHCCCCCCCC
Q ss_conf 999999999-99999998---048789998-4-043021---------112210474------00001221114554455
Q 000628 778 LTGYSFLFN-FLFIAALA---YLNPIGDSN-S-TVIEED---------GEKQRASGH------EAEGMQMAVRSSSKTVG 836 (1383)
Q Consensus 778 l~~~~~~f~-~l~~l~l~---~~~~~~~~~-~-~~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~ 836 (1383)
..++..... +.+.+.+. ++...+.-. . ....-. ......... ........... ..
T Consensus 937 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~----~~ 1012 (1284)
T 3g5u_A 937 TFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK----TP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CC
T ss_conf 99999999999999999999999990980699999999999999999999999999999999999999999838----87
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 54344567644556782779833301463353212356566660672010468847809999646999278899524289
Q 000628 837 AAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1383)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~L~g~ 916 (1383)
........+...+.....++++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|+|.
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6666555665456777857999989977999----------987002030599769988999889999789999999468
Q ss_pred CCCCEEEEEEEECCCCCCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-
Q ss_conf 7786379999995903881---100224899714897899999999999878741599984899999999999982995-
Q 000628 917 KTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK- 992 (1383)
Q Consensus 917 ~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~- 992 (1383)
.. +.+|+|.++|.+... ..+++.++||+|++.++ ..||+||+.+.... ...+.+ .+++.++..++.
T Consensus 1083 ~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~ 1152 (1284)
T 3g5u_A 1083 YD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQ 1152 (1284)
T ss_dssp SC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHH
T ss_pred CC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHH
T ss_conf 67--89977989999800078999970268987787406-66699997466877---899999----9999999839599
Q ss_pred ------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf ------54333346998777899999999999999629997114089999999999999999999885898899995687
Q 000628 993 ------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1383)
Q Consensus 993 ------~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqp 1066 (1383)
+-.|+.+|..| ..||||||||++||++|+.+|+||+|||||+|||..+...|++.+++. ..|+|||+++|++
T Consensus 1153 ~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1153 FIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRL 1230 (1284)
T ss_dssp HHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCT
T ss_pred HHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCH
T ss_conf 99727042456117888-933899999999999997499999986875557999999999999986-7999899995587
Q ss_pred CHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 19999862618799269599992589
Q 000628 1067 SIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1383)
Q Consensus 1067 s~~i~~~fD~illl~~gG~~~y~G~~ 1092 (1383)
+ .+ ..+|++++|. +|+++..|++
T Consensus 1231 ~-~i-~~~dri~vl~-~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1231 S-TI-QNADLIVVIQ-NGKVKEHGTH 1253 (1284)
T ss_dssp T-GG-GSCSEEEEEE-TBEEEEEECH
T ss_pred H-HH-HCCCEEEEEE-CCEEEEECCH
T ss_conf 9-99-8099899998-9989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=463.29 Aligned_cols=437 Identities=24% Similarity=0.280 Sum_probs=309.0
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 46440178893884999985999977999999953939999840299---------9979507987-----776339995
Q 000628 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1383)
Q Consensus 185 ~IL~~vSg~i~pG~ltailGpsGSGKSTLL~~LaG~l~~~~~vsG~I---------~~nG~~~~~~-----~~~r~~aYV 250 (1383)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 47998899---999999999720103777125677995599886199999118999999985011103469999988099
Q 000628 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1383)
Q Consensus 251 ~Q~D~h~~---~lTVrEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL 327 (1383)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH
Q ss_conf 53235433574567779678799999999953997849837987999999999999999998818965999981491049
Q 000628 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1383)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~ 407 (1383)
++..|..+++ |||||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++.+ .+.|++++.|.. .++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-699899996485-898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85249399973982899649567999998649878999996679975237200124564049998779965899999717
Q 000628 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1383)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1383)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00055885303977765679876556766775999999999999999821938999999999999999877540345776
Q 000628 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1383)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1383)
+. . +... ....
T Consensus 315 ----------------------------~~--~---------~~~i------------------~~~~------------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGI------------------NEFL------------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHH------------------HHHH------------
T ss_pred ----------------------------HH--H---------HHHH------------------HHHH------------
T ss_conf ----------------------------32--7---------9999------------------9997------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
Q ss_conf 78788520467899999999997799999986112476661027654235588989999711999989999888877048
Q 000628 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1383)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g 647 (1383)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 87218799999999999999899999999883056477888999999999997640224698423579999781999999
Q 000628 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1383)
Q Consensus 648 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~ 727 (1383)
.|+.. ...
T Consensus 326 -----------------------------------------------------~~~~~-~~~------------------ 333 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK-DEN------------------ 333 (607)
T ss_dssp -----------------------------------------------------HTEET-TTT------------------
T ss_pred -----------------------------------------------------HHCCH-HHH------------------
T ss_conf -----------------------------------------------------51013-455------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99999974088444578998875554220010024743457305567899999999999999999980487899984043
Q 000628 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1383)
Q Consensus 728 ~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~ 807 (1383)
.+.. ... . .+.
T Consensus 334 ----------~~~~---~~~---~-----------~~~------------------------------------------ 344 (607)
T 3bk7_A 334 ----------VRFR---PYE---I-----------RFT------------------------------------------ 344 (607)
T ss_dssp ----------EECC---SSC---C-----------CCC------------------------------------------
T ss_pred ----------HHCC---CCC---C-----------CCC------------------------------------------
T ss_conf ----------4301---212---3-----------456------------------------------------------
Q ss_pred CCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEE
Q ss_conf 02111221047400001221114554455543445676445567827798333014633532123565666606720104
Q 000628 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1383)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1383)
. . . ... . ......++++|++..+. . ..|++++
T Consensus 345 --------------------~--~---~--~~~-~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~ 376 (607)
T 3bk7_A 345 --------------------K--L---S--ERV-D------VERETLVEYPRLVKDYG-------------S-FKLEVEP 376 (607)
T ss_dssp --------------------C--S---T--TSC-C------CCCCEEEEECCEEEECS-------------S-CEEEECC
T ss_pred --------------------C--C---C--CCC-C------CCCCEEEEEECEEEEEC-------------C-EEEEECC
T ss_conf --------------------5--7---7--754-4------46752899913098744-------------3-4899351
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 68847809999646999278899524289778637999999590388110022489971489789999999999987874
Q 000628 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1383)
Q Consensus 888 ~~i~pG~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1383)
+.+++|+++||+||||||||||+++|+|.... .+|+|.+ .+.++|++|+....+.+||.|++......
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 444 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSS 444 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 53279989999999998999999999669888--8628999----------02799980576677898499999753125
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 15999848999999999999829955433334699877789999999999999962999711408999999999999999
Q 000628 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1383)
Q Consensus 968 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~~~~~i~~ 1047 (1383)
.. ...+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..++..+++
T Consensus 445 ~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 445 KL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp HH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 87-------789999999987699337549922-----379999999999999974899899968744789999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999988-58988999956871999986261879926-9599992589863
Q 000628 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1383)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~ 1095 (1383)
.|++++ +.|.|||+++|+.. ++...+|++++|.. .|++...|++.+.
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHHH
T ss_conf 999999747989999909899-9998699999995983069742898999
No 4
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=452.93 Aligned_cols=215 Identities=23% Similarity=0.271 Sum_probs=155.0
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCEEEEEECCEE
Q ss_conf 52464401788938849999859999779999---------------------99953939999----840299997950
Q 000628 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDL----RASGKITYCGHE 237 (1383)
Q Consensus 183 ~~~IL~~vSg~i~pG~ltailGpsGSGKSTLL---------------------~~LaG~l~~~~----~vsG~I~~nG~~ 237 (1383)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++. ...|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCCC-------------------CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 7987776339995479988-------------------999999999997201037771256779955998861999991
Q 000628 238 LNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (1383)
Q Consensus 238 ~~~~~~~r~~aYV~Q~D~h-------------------~~~lTVrEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~ 298 (1383)
.... +++.++|+.|.... ++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 18999999985011103469999988099532-35433574567779678799999999953997--8498379879999
Q 000628 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (1383)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~--vLlLDEpTSGLDs 375 (1383)
.+... .+.... -.+++.+||++. .|..++. |||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 172 -~~~~~-------~~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHH-HHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88889-------999999-98999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999988189659999814910498524939997------398289964956799
Q 000628 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1383)
Q Consensus 376 ~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilL------s~G~ivy~Gp~~~~~ 432 (1383)
.+..++.+.|+++.. .+.|+|++.|.. +....+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-499899995787--999629989994466656698899740899986
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=452.79 Aligned_cols=427 Identities=21% Similarity=0.302 Sum_probs=301.5
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 2464401788938849999859999779999999539399998402999979507987776339995479-988999999
Q 000628 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMTV 262 (1383)
Q Consensus 184 ~~IL~~vSg~i~pG~ltailGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~-D~h~~~lTV 262 (1383)
..+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... +...+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999997201037771256779955998861999991189999999850111034699999880995-3235433574567
Q 000628 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1383)
Q Consensus 263 rEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dT~VG~~~~r 341 (1383)
.|++.+ ...+ . + ..++.+++.+||+ +..+..+++
T Consensus 514 ~e~l~~--~~~~--~----------~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG--T----------K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS--C----------H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCC--H----------H---------------------------HHHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--6127--9----------9---------------------------99999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCE
Q ss_conf 77967879999999995399784983798799999999999999999881896599998149104985249399973982
Q 000628 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1383)
Q Consensus 342 GLSGGQKkRvsia~aLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ 421 (1383)
||||||||+.||++++.+|++|+|||||+|||..+..++.+.|++ .+.|+|++.|. ..++.+.+|+|++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----79989999798-899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 89-96495679999986498789999966799752372001245640499987799658999997170005588530397
Q 000628 422 IV-YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP 500 (1383)
Q Consensus 422 iv-y~Gp~~~~~~~F~~lGf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~~l~~~ 500 (1383)
++ |.|+.+++... .| . ...
T Consensus 623 iv~~~G~~~e~~~~-------~~---------------~-~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CP---------------A-AKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHH-------CG---------------G-GGG-------------------------------------
T ss_pred EECCCCCHHHHHHH-------HH---------------H-HHH-------------------------------------
T ss_conf 42677999999861-------48---------------8-999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 77656798765567667759999999999999998219389999999999999998775403457767878852046789
Q 000628 501 YDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580 (1383)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~l 580 (1383)
.+ ... ....
T Consensus 643 --------------~~---------------------------------------------~l~--~~~~---------- 651 (986)
T 2iw3_A 643 --------------YE---------------------------------------------ELS--NTDL---------- 651 (986)
T ss_dssp --------------SS---------------------------------------------STT--TCCC----------
T ss_pred --------------HH---------------------------------------------HHH--HHHH----------
T ss_conf --------------98---------------------------------------------644--5443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999977999999861124766610276542355889899997119999899998888770488721879999999
Q 000628 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFL 660 (1383)
Q Consensus 581 ff~ll~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 660 (1383)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998999999998830564778889999999999976402246984235799997819999999999997408844
Q 000628 661 AFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW 740 (1383)
Q Consensus 661 ~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nef~~~~~ 740 (1383)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCC
Q ss_conf 45789988755542200100247434573055678999999999999999999804878999840430211122104740
Q 000628 741 DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHE 820 (1383)
Q Consensus 741 ~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1383)
. .+.+ + ..
T Consensus 654 ~--~p~~-------~--------~~------------------------------------------------------- 661 (986)
T 2iw3_A 654 K--FPEP-------G--------YL------------------------------------------------------- 661 (986)
T ss_dssp C--CCCC-------C--------CC-------------------------------------------------------
T ss_pred C--CCCC-------C--------CC-------------------------------------------------------
T ss_conf 3--5655-------5--------43-------------------------------------------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEEC
Q ss_conf 00012211145544555434456764455678277983330146335321235656666067201046884780999964
Q 000628 821 AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMG 900 (1383)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G 900 (1383)
.. . . ......+.++|+++.++ ...+.+|+++|+.+++|+++||+|
T Consensus 662 --------------~~-~---~------~~~~~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiG 706 (986)
T 2iw3_A 662 --------------EG-V---K------TKQKAIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIG 706 (986)
T ss_dssp --------------TT-C---C------STTSEEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECS
T ss_pred --------------CC-C---C------CCCCCEEEEEEEEEEEC-----------CCCCEEEECCEEEECCCCEEEEEC
T ss_conf --------------34-5---6------67870699984699818-----------987413432279982897899989
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHH--------H
Q ss_conf 699927889952428977863799999959038811002248997148978----9999999999987874--------1
Q 000628 901 VSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH----SPYVTVYESLLYSAWL--------R 968 (1383)
Q Consensus 901 ~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTv~E~l~f~a~l--------r 968 (1383)
+||||||||+++|+|.... .+|+|.++|. ..++|++|+..+ ....|++|++.+.-.. +
T Consensus 707 pNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~ 776 (986)
T 2iw3_A 707 PNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDR 776 (986)
T ss_dssp CCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTT
T ss_pred CCCCCHHHHHHHHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9998799999999579888--8608998686--------42576313024332100114799998877504502555543
Q ss_pred ----CC----------------------------------------------------CC--------CC----------
Q ss_conf ----59----------------------------------------------------99--------84----------
Q 000628 969 ----LS----------------------------------------------------SD--------VD---------- 974 (1383)
Q Consensus 969 ----~~----------------------------------------------------~~--------~~---------- 974 (1383)
.. .. .+
T Consensus 777 ~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~ 856 (986)
T 2iw3_A 777 ANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856 (986)
T ss_dssp TSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 32103435554420001123201234444555431222002100025543200000123432344321016777666766
Q ss_pred ----------------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf ----------------8999999999999829955-4-333346998777899999999999999629997114089999
Q 000628 975 ----------------TKKRKMFVDEVMELVELKS-L-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1383)
Q Consensus 975 ----------------~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsG 1036 (1383)
.....+.++++++.+||.+ . .+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 857 ~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~g 931 (986)
T 2iw3_A 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931 (986)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5544324555430223234799999999976998054448980-----42399999999999999839999999798657
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999999999998858988999956871999986261879926959999258
Q 000628 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1383)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1091 (1383)
||..+...+.+.|+++ +.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 932 LD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 932 LDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp CCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred CCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 7999999999999974---997999979899-9998589999998-999998687
No 6
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=452.40 Aligned_cols=437 Identities=23% Similarity=0.259 Sum_probs=307.0
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 46440178893884999985999977999999953939999840299---------9979507987-----776339995
Q 000628 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1383)
Q Consensus 185 ~IL~~vSg~i~pG~ltailGpsGSGKSTLL~~LaG~l~~~~~vsG~I---------~~nG~~~~~~-----~~~r~~aYV 250 (1383)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 479988999---99999999720103777125677995599886199999118999999985011103469999988099
Q 000628 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1383)
Q Consensus 251 ~Q~D~h~~~---lTVrEtL~Faa~~~~~g~~~~~~~el~~~ek~~~i~~~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL 327 (1383)
.|.....+. .||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH
Q ss_conf 53235433574567779678799999999953997849837987999999999999999998818965999981491049
Q 000628 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1383)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsia~aLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~ 407 (1383)
++..|..+++ |||||||||.||++|+.+|++|+|||||++||..++.++.+.|+++.+ .+.|+|++.|. ..++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-59879999478-8999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85249399973982899649567999998649878999996679975237200124564049998779965899999717
Q 000628 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1383)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1383)
...+|+|++|.+|...|. .. ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~-~~----------------------------------------~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-IF----------------------------------------SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-EE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCCC-CC----------------------------------------CCH----------------
T ss_conf 976889999868632440-22----------------------------------------553----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00055885303977765679876556766775999999999999999821938999999999999999877540345776
Q 000628 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1383)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1383)
+. . +.. +.....
T Consensus 245 ----------------------------~~--~---------~~~------------------~~~~~~----------- 256 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNG------------------INEFLR----------- 256 (538)
T ss_dssp ----------------------------EE--H---------HHH------------------HHHHHH-----------
T ss_pred ----------------------------HH--H---------HHH------------------HHHHHH-----------
T ss_conf ----------------------------55--8---------999------------------998764-----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC
Q ss_conf 78788520467899999999997799999986112476661027654235588989999711999989999888877048
Q 000628 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1383)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~f~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~i~~iP~~~~~~~i~~~i~Y~~~g 647 (1383)
T Consensus 257 -------------------------------------------------------------------------------- 256 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------- 256 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 87218799999999999999899999999883056477888999999999997640224698423579999781999999
Q 000628 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1383)
Q Consensus 648 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~ 727 (1383)
|+...
T Consensus 257 ------------------------------------------------------~~~~~--------------------- 261 (538)
T 1yqt_A 257 ------------------------------------------------------GYLKD--------------------- 261 (538)
T ss_dssp ------------------------------------------------------TEETT---------------------
T ss_pred ------------------------------------------------------HCCCH---------------------
T ss_conf ------------------------------------------------------02300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99999974088444578998875554220010024743457305567899999999999999999980487899984043
Q 000628 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1383)
Q Consensus 728 ~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~ 807 (1383)
.... ... .. . .+.
T Consensus 262 ----------~~~~--~~~----~~-~--------~~~------------------------------------------ 274 (538)
T 1yqt_A 262 ----------ENVR--FRP----YE-I--------KFT------------------------------------------ 274 (538)
T ss_dssp ----------TTEE--CSS----SC-C--------CCC------------------------------------------
T ss_pred ----------HHHC--CCC----CC-C--------CCC------------------------------------------
T ss_conf ----------2320--344----45-5--------545------------------------------------------
Q ss_pred CCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEE
Q ss_conf 02111221047400001221114554455543445676445567827798333014633532123565666606720104
Q 000628 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1383)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1383)
. . . ... . +.....++++|+++.++ . ..|++++
T Consensus 275 --------------------~--~---~--~~~-~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~ 306 (538)
T 1yqt_A 275 --------------------K--T---G--ERV-E------IERETLVTYPRLVKDYG-------------S-FRLEVEP 306 (538)
T ss_dssp --------------------C--S---S--GGG-S------SCCCEEEEECCEEEEET-------------T-EEEEECC
T ss_pred --------------------C--C---C--CCC-C------CCCCEEEEEEEEEEEEC-------------C-EEEEECC
T ss_conf --------------------5--7---7--655-6------67871899930799989-------------9-8999074
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 68847809999646999278899524289778637999999590388110022489971489789999999999987874
Q 000628 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1383)
Q Consensus 888 ~~i~pG~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1383)
+.+++|+++||+|+||||||||+++|+|.... .+|+|.+ ...++|++|+....+.+||.|.+......
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~ 374 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDAS 374 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 41289989999889999999999999679989--9718998----------74699982677678888599999864036
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 15999848999999999999829955433334699877789999999999999962999711408999999999999999
Q 000628 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1383)
Q Consensus 968 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~~~~~i~~ 1047 (1383)
... ..+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..+...+++
T Consensus 375 ~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 375 KLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp HHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 887-------89999999997499156539944-----489999999999999972899899939801089999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999988-58988999956871999986261879926-9599992589863
Q 000628 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1383)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~ 1095 (1383)
.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+.
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHH
T ss_conf 999999867989999939899-9999689999990883157404898999
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=441.89 Aligned_cols=203 Identities=23% Similarity=0.255 Sum_probs=160.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 67201046884780999964699927889952428977863799999959038811002248997148978999999999
Q 000628 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1383)
Q Consensus 881 ~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 960 (1383)
..|+.+++.+++|+++||+|+||||||||+++|+|.... .+|+|.+++ +.++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECC---------EEEEEECHHCCCCCCCCHHHH
T ss_conf 899826646889989999999999899999999578889--981899998---------456761400034547779999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH
Q ss_conf 99878741599984899999999999982995543333469987778999999999999996299971140899999999
Q 000628 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1383)
Q Consensus 961 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~ 1040 (1383)
+.+...... .. ....++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..
T Consensus 351 l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 987553112--11----69999999987599778628932-----27999999999999997089989996986579999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 99999999999885-8988999956871999986261879926-959999258986314789998828
Q 000628 1041 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHESHKLIEYFEAV 1106 (1383)
Q Consensus 1041 ~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~~~~~~~yf~~~ 1106 (1383)
++..+++.|+++++ .|.|||+++|+.. ++...+|++++|.. .|.....+++.........|+...
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.52 Aligned_cols=201 Identities=19% Similarity=0.197 Sum_probs=156.0
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCC
Q ss_conf 6720104688478-----09999646999278899524289778637999999590388110022489971489789999
Q 000628 881 QLLHSVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1383)
Q Consensus 881 ~iL~~vs~~i~pG-----~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 955 (1383)
..++++++.+.+| |++||+|+||||||||+++|+|.... .+|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 99999998787415999848999999999999829955433334699877789999999999999962999711408999
Q 000628 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1383)
Q Consensus 956 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTs 1035 (1383)
||+|.+... ++. .... ...++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCCC---HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3246---8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999988-58988999956871999986261879926-959999258986314789998828
Q 000628 1036 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHESHKLIEYFEAV 1106 (1383)
Q Consensus 1036 GLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~~y~G~~~~~~~~~~~yf~~~ 1106 (1383)
|||..++..+++.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.+.......+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=349.08 Aligned_cols=197 Identities=28% Similarity=0.414 Sum_probs=144.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCC--CCC--EEE------EEEEECCCCCCHH------
Q ss_conf 72010468847809999646999278899---------5242897--786--379------9999959038811------
Q 000628 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRK--TGG--YIE------GDIKISGYPKNQE------ 936 (1383)
Q Consensus 882 iL~~vs~~i~pG~~~al~G~sGaGKTTLl---------~~L~g~~--~~g--~~~------G~i~i~g~~~~~~------ 936 (1383)
.|+|||+.+++|++++|+|+||||||||+ +.+.+.. .++ .+. +.+.++..+....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred CCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 33653128718959999925888815457777778999874034456665333355101142576315655665555643
Q ss_pred C--------------------------------------CCCEEEEECCCCCCCC-------------------------
Q ss_conf 0--------------------------------------0224899714897899-------------------------
Q 000628 937 T--------------------------------------FARVSGYCEQNDIHSP------------------------- 953 (1383)
Q Consensus 937 ~--------------------------------------~~~~~gyv~Q~d~~~~------------------------- 953 (1383)
. ..+..|++.++..+.|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 02236788999861266877504555431111466644323676348774101676156322014643566655430156
Q ss_pred -------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-
Q ss_conf -------999999999878741599984899999999999982995543333469987778999999999999996299-
Q 000628 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP- 1025 (1383)
Q Consensus 954 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~Ia~~L~~~p- 1025 (1383)
.+||.|++.|... .+ ....+.++|+.+||.... .+.+ ...||||||||+.||++|+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~~---~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------IP---SIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------CH---HHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHCCHHHHHHHHHC------CH---HHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 77787740779999998751------50---589999999981886333---1687-15799999999999999962878
Q ss_pred --CCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCCC
Q ss_conf --97114089999999999999999999885898899995687199998626187992-----695999925898
Q 000628 1026 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1383)
Q Consensus 1026 --~il~lDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~-----~gG~~~y~G~~~ 1093 (1383)
++++|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|++++|. ++|++++.|++.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 8978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=348.36 Aligned_cols=215 Identities=25% Similarity=0.362 Sum_probs=179.3
Q ss_pred CCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 82779833301463353212356566660672010468847809999646999278899524289778637999999590
Q 000628 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1383)
Q Consensus 852 ~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1383)
...++|+|+++.++.. ....+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCC---HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 388---1100224899714897899999999999878741599984899999999999982995-------543333469
Q 000628 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-------SLNDSMVGL 1001 (1383)
Q Consensus 932 ~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 1001 (1383)
+.. ...+++.++||+|++.++. -|++||+.|+. .+.+. +.++++++..++. +--|+.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 5011259998504666587533207-86167886415-----52209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 98777899999999999999629997114089999999999999999999885898899995687199998626187992
Q 000628 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1383)
Q Consensus 1002 ~~~~~lSgGqrkrl~Ia~~L~~~p~il~lDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~ 1081 (1383)
.|. .||||||||++|||+++++|+|++||||||+||+.+...+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCCC
Q ss_conf 695999925898
Q 000628 1082 RGGRVIYAGPLG 1093 (1383)
Q Consensus 1082 ~gG~~~y~G~~~ 1093 (1383)
+|+++..|+..
T Consensus 627 -~G~ive~Gth~ 637 (1321)
T 4f4c_A 627 -NGQVVEVGDHR 637 (1321)
T ss_dssp -TTEEEEEECHH
T ss_pred -CCEEECCCCHH
T ss_conf -99651368999
Done!