BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000630
(1382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 3 NDATTPA-SF-RLRWDVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAP 60
+D+T P+ SF + ++VFLSFRG DTR+ T LY SL + + F+DD L +G EI P
Sbjct: 22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGP 81
Query: 61 XXXXXXXXXXXXXXXXXPNYGSSRWCLEELAKIC-----ELNRLILPVFYKVDPSDVRRQ 115
Y S+WCL ELA+I + R+ILP+FY VDPSDVR Q
Sbjct: 82 NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141
Query: 116 QGPFKQDFERHQDRFGEDTVSQWRKAMMKVGGISGWVFNNSEEEQLV 162
G +K+ F +H ++F T+ W+ A+ KVG + GW ++++ +
Sbjct: 142 TGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 14 RWDVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPXXXXXXXXXXXXX 73
++DVFLSFRG DTR LY L +R FKDD L G +P
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 74 XXXXPNYGSSRWCLEELAKICELNR----LILPVFYKVDPSDVRRQQGPFKQDFERHQDR 129
NY +S WCL+EL I + + ++P+FY V+P+ VR Q G + F++H R
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 130 FGEDTVSQWRKAMMKVGGISGWVFNNSEEEQLVQLLVKRVLAELSN 175
+ V +WR+A+ +SG + + + LV ++ E+SN
Sbjct: 128 EDPEKVLKWRQALTNFAQLSGDCSGDDDSK-----LVDKIANEISN 168
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 683 LASIPDLSEH-QKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELP-----SD 736
L +PD + LE L L R L + S+ +L+ L L++R C L ELP +D
Sbjct: 116 LXELPDTXQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 737 VSG----LKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEK 792
SG L +L++L L + + ++ LP I ++++LK L + + + L +I HL KLE+
Sbjct: 175 ASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233
Query: 793 LNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTI 852
L+L C +L+ P G + + + + S + LP + + LEKL L GC +++ +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 853 PDSIGHLKS 861
P I L +
Sbjct: 294 PSLIAQLPA 302
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 730 LIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVK 789
L + P L HL++ + D + L ELP+ L+ L + + LP SI L +
Sbjct: 93 LPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNR 151
Query: 790 LEKLNLGKCKSLKQLPNCIGTQ--------LIALKELSFNYSAVEELPDSVGHMGNLEKL 841
L +L++ C L +LP + + L+ L+ L ++ + LP S+ ++ NL+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 842 SLIGCGSITTIPDSIGHLKSLIEFLIDG-TAVKNLPASIGSLSYLKAFSVGRCQFLSELP 900
I ++ + +I HL L E + G TA++N P G + LK + C L LP
Sbjct: 212 K-IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 901 DSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSI 953
LD I L L+KL +R C++L LP I +
Sbjct: 271 -------------LD----------IHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 12/190 (6%)
Query: 827 ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLK 886
+ PD + +L+ ++ G + +PD+ L + ++ LPASI SL+ L+
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAG-LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLR 153
Query: 887 AFSVGRCQFLSELPDSI---------EGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVM 937
S+ C L+ELP+ + +GL +L L+L+ T IR LP I L+ L L +
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 938 RNCLSLKTLPDSIGSILTLTTLNIVNASITR-MPESIGILENLVILRLNECKQLEKLPAS 996
RN L L +I + L L++ + R P G L L L +C L LP
Sbjct: 214 RNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 997 MGKLKSLVHL 1006
+ +L L L
Sbjct: 273 IHRLTQLEKL 282
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 896 LSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGS--- 952
L ELPD+ + A L L L +R LP I L L +L +R C L LP+ + S
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175
Query: 953 ------ILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHL 1006
++ L +L + I +P SI L+NL L++ L L ++ L L L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEEL 234
Query: 1007 -LMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEEL 1065
L TA+ P FG + L L +K S L LP L+ LE+L
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCS------------NLLTLPLDIHRLTQLEKL 282
Query: 1066 DAQG 1069
D +G
Sbjct: 283 DLRG 286
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 647 LAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRL 706
L L L +GI L S N +NL L +R A P + KLE+L L C L
Sbjct: 185 LQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 707 TKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSM 764
G + L L L+DC NL+ LP D+ L LE L L C L LP I +
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 1049 LTVLPTSFCNLSSLEE--LDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGL 1106
L P LS L+ +DA G ++PD ++ + LE L L N LP+S+ L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLX---ELPDTXQQFAGLETLTLARNPLRALPASIASL 149
Query: 1107 SHLKNLLLPYC 1117
+ L+ L + C
Sbjct: 150 NRLRELSIRAC 160
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 752 SKLKELPEDICS-MRSLKELLVDGTAIEKLPQSIFH-LVKLEKLNLGKCKSLKQLPNCIG 809
+ LK LP + + SL +L + G ++ LP +F+ L L LNL L+ LPN +
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVF 96
Query: 810 TQLIALKELSFNYSAVEELPDSV 832
+L LKEL+ N + ++ LPD V
Sbjct: 97 DKLTQLKELALNTNQLQSLPDGV 119
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting
Protein), A Leucine Rich Repeat Protein Involved In Plant
Defense
Length = 313
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 17/215 (7%)
Query: 899 LPDSIEGLASLVELQLDGTS--IRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTL 956
+P S+ L L L + G + + +P I L L L + + +PD + I TL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 957 TTLNI-VNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSL-VHLLMEETAVT 1014
TL+ NA +P SI L NLV + + + +P S G L + + +T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 1015 -ELPESFGMLSSLMVLKMKKPSVKARNS----SAREKQKLTVLPTSFC------NLS-SL 1062
++P +F L+ L + + + ++ S S + QK+ + S LS +L
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 1063 EELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC 1097
LD + RI G +P +L L LN+ NN C
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 28/209 (13%)
Query: 780 LPQSIFHLVKLEKLNLGKCKSL-KQLPNCIGTQLIALKELSFNYSAVE-ELPDSVGHMGN 837
+P S+ +L L L +G +L +P I +L L L ++ V +PD + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 838 LEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKN-LPASIGSLSYL-KAFSVGRCQF 895
L L T+P SI L +L+ DG + +P S GS S L + ++ R +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 896 LSELPDS---------------IEGLASLV--------ELQLDGTSIRHLPDQIGGLKML 932
++P + +EG AS++ ++ L S+ ++G K L
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 933 DKLVMRNCLSLKTLPDSIGSILTLTTLNI 961
+ L +RN TLP + + L +LN+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 225/531 (42%), Gaps = 64/531 (12%)
Query: 602 VSLRLLQINYTKLEGSFKFLPHELKWLQWKDCKMKTLPS-DFRPF-QLAVLDLSESGIEY 659
++ + +++N+ K+ + LP K L ++ L S F F +L VLDLS I+
Sbjct: 34 ITYQCMELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 90
Query: 660 LW-GSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSS 718
+ G++ + + ++L +LA + S L+KLV + + +G+L +
Sbjct: 91 IEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149
Query: 719 LLHLNLRDCRNLIE---LPSDVSGLKHLENLILSD-------CSKLKELPEDICSMRSLK 768
L LN+ NLI+ LP S L +LE+L LS C+ L+ L + SL
Sbjct: 150 LKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207
Query: 769 ELLVDGTAIEKLPQSIFHLVKLEKLNL-GKCKSLKQLPNCIGTQLIALKELSFNYSAVEE 827
L I+ F ++L KL L SL + CI L L + + E
Sbjct: 208 LSLNPMNFIQP---GAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGE 260
Query: 828 LPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG----TAVKNLPASIGSLS 883
+ G++ +K +L G ++T + +L ++ +ID T V + ++
Sbjct: 261 FRNE-GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319
Query: 884 YLKAFSVG---------RCQFLSELPD-SIEGLASLVELQLDGTSIRHLPDQIGGLKMLD 933
+K FS C+F + P ++ L L G + D + L+ LD
Sbjct: 320 RVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLD 377
Query: 934 KLVMRNCLSLK-TLPDSIGSILTLTTLNI-VNASITRMPESIGI--LENLVILRLNECKQ 989
+ RN LS K S ++L L++ N IT +G+ LE+L N KQ
Sbjct: 378 --LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQ 434
Query: 990 LEKLPASMGKLKSLVHLLMEETAV-TELPESFGMLSSLMVLKMKKPSVKARNSSAREKQK 1048
+ + + L++L++L + T F LSSL VLKM S +
Sbjct: 435 MSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------- 484
Query: 1049 LTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNL 1099
LP F L +L LD ++ P F LSSL++LN+ +NNF +L
Sbjct: 485 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra
Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra
Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 224/531 (42%), Gaps = 64/531 (12%)
Query: 602 VSLRLLQINYTKLEGSFKFLPHELKWLQWKDCKMKTLPS-DFRPF-QLAVLDLSESGIEY 659
++ + +++N+ K+ + LP K L ++ L S F F +L VLDLS I+
Sbjct: 10 ITYQCMELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 660 LW-GSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSS 718
+ G++ + + ++L +LA + S L+KLV + + +G+L +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 719 LLHLNLRDCRNLIE---LPSDVSGLKHLENLILSD-------CSKLKELPEDICSMRSLK 768
L LN+ NLI+ LP S L +LE+L LS C+ L+ L + SL
Sbjct: 126 LKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 769 ELLVDGTAIEKLPQSIFHLVKLEKLNL-GKCKSLKQLPNCIGTQLIALKELSFNYSAVEE 827
L I+ F ++L KL L SL + CI L L + + E
Sbjct: 184 LSLNPMNFIQP---GAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGE 236
Query: 828 LPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG----TAVKNLPASIGSLS 883
+ G++ +K +L G ++T + +L ++ +ID T V + ++
Sbjct: 237 FRNE-GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 884 YLKAFSVG---------RCQFLSELPD-SIEGLASLVELQLDGTSIRHLPDQIGGLKMLD 933
+K FS C+F + P ++ L L G + D + L+ LD
Sbjct: 296 RVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLD 353
Query: 934 KLVMRNCLSLK-TLPDSIGSILTLTTLNI-VNASITRMPESIGI--LENLVILRLNECKQ 989
+ RN LS K S +L L++ N IT +G+ LE+L N KQ
Sbjct: 354 --LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQ 410
Query: 990 LEKLPASMGKLKSLVHLLMEETAV-TELPESFGMLSSLMVLKMKKPSVKARNSSAREKQK 1048
+ + + L++L++L + T F LSSL VLKM S +
Sbjct: 411 MSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------- 460
Query: 1049 LTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNL 1099
LP F L +L LD ++ P F LSSL++LN+ +NNF +L
Sbjct: 461 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 27/191 (14%)
Query: 738 SGLKHLENLILSDCSKLKELPEDICSMRS-LKELLVDGTAIEKLPQSIFHLV-KLEKLNL 795
+GL L L L D + L +P S L+EL + IE +P F+ V L +L+L
Sbjct: 120 NGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 796 GKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDS 855
G+ K L+ + L LK L+ ++++P+ +G LE+L + G
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG-LEELEMSG---------- 227
Query: 856 IGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLD 915
H + P S LS LK V Q ++ +GLASLVEL L
Sbjct: 228 -NHFPEI------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 916 GTSIRHLPDQI 926
++ LP +
Sbjct: 275 HNNLSSLPHDL 285
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 901 DSIEGLASLVELQLDGTSIRHLP-DQIGGLKMLDKLVMRNCLSLKTLPDSIGSILT-LTT 958
D+ L L LQL SIR + GL L+ L + + L +P L+ L
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE 151
Query: 959 LNIVNASITRMPE-SIGILENLVILRLNECKQLEKLP-ASMGKLKSLVHLLMEETAVTEL 1016
L + N I +P + + +L+ L L E K+LE + + L +L +L + + ++
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211
Query: 1017 PESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKI 1076
P P V + P SF LSSL++L ++
Sbjct: 212 PN-------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 1077 PDDFEKLSSLEILNLGNNNFCNLPSSL 1103
+ F+ L+SL LNL +NN +LP L
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDL 285
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 896 LSELPDSIEGLASLVELQLDGTSIRHLPDQI-GGLKMLDKLVMR-NCLSLK-TLPDSIGS 952
L+ +P I +S L+L+ ++ LP + L L KL + N LS K S
Sbjct: 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 953 ILTLTTLNI-VNASITRMPESIGI--LENLVILRLNECKQLEKLPASMGKLKSLVHLLME 1009
+L L++ N IT +G+ LE+L N KQ+ + + L++L++L +
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS-LRNLIYLDIS 134
Query: 1010 ETAV-TELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQ 1068
T F LSSL VLKM S + LP F L +L LD
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLS 183
Query: 1069 GWRIGGKIPDDFEKLSSLEILNLGNNNFCNL 1099
++ P F LSSL++LN+ +NNF +L
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 738 SGLKHLENLILSDCSKLKELPEDICSMRSLKELLVD-----GT------AIEKLPQSIF- 785
+GL L + +KL L D +++L + D GT + LP +F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 786 HLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELP-DSVGHMGNLEKLSLI 844
HL +L+KL LG LK LP+ + +L LKEL N + ++ +P + + NL+ LSL
Sbjct: 105 HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL- 162
Query: 845 GCGSITTIP----DSIGHLKSLIEF 865
+ ++P D +G L+++ F
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLF 187
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 19/145 (13%)
Query: 738 SGLKHLENLILSDCSKLKELPEDICSMRSLKELLVD-----GT------AIEKLPQSIF- 785
+GL L + +KL L D +++L + D GT + LP +F
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 786 HLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELP-DSVGHMGNLEKLSLI 844
HL +L+KL LG LK LP+ + +L LKEL N + ++ +P + + NL+ LSL
Sbjct: 105 HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL- 162
Query: 845 GCGSITTIP----DSIGHLKSLIEF 865
+ ++P D +G L+++ F
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLF 187
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 896 LSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILT 955
LS LPD++ +++E+ + + LP+ L+ LD R L TLP+ S
Sbjct: 71 LSSLPDNLPPQITVLEITQNA--LISLPELPASLEYLDACDNR----LSTLPELPAS--- 121
Query: 956 LTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTE 1015
L L++ N +T +PE +LE + N+ L +LP S+ L + L T + E
Sbjct: 122 LKHLDVDNNQLTXLPELPALLE-YINADNNQLTXLPELPTSLEVLSVRNNQL---TFLPE 177
Query: 1016 LPESFGMLSSLMVLKMKKPSVKARNSSAREKQ 1047
LPES L L P+V RN + E +
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETE 209
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 762 CSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFN 821
C + EL ++ + LP ++ + + ++ SL +LP L L
Sbjct: 56 CLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELP----ASLEYLDACDNR 111
Query: 822 YSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFL-IDGTAVKNLPASIG 880
S + ELP S+ H+ + +T +P+ L +L+E++ D + LP
Sbjct: 112 LSTLPELPASLKHLD-------VDNNQLTXLPE----LPALLEYINADNNQLTXLPELPT 160
Query: 881 SLSYLKAFSVGRCQFLSELPDSIEGL 906
SL L + + FL ELP+S+E L
Sbjct: 161 SLEVLSVRN-NQLTFLPELPESLEAL 185
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 956 LTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTE 1015
LT L + S+T +P I L NL +L L+ +L LPA +G L + + VT
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 1016 LPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVL 1052
LP FG L +L L ++ + EKQ L +L
Sbjct: 308 LPWEFGNLCNLQFLGVE--------GNPLEKQFLKIL 336
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 909 LVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITR 968
L L L+G S+ LP +I L L L + + L +LP +GS L + +T
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 969 MPESIGILENLVILRLNECKQLEK 992
+P G L NL L + E LEK
Sbjct: 308 LPWEFGNLCNLQFLGV-EGNPLEK 330
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 815 LKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKN 874
L L N +++ ELP + ++ NL L L +T++P +G L F V
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDL-SHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 875 LPASIGSLSYLKAFSV 890
LP G+L L+ V
Sbjct: 308 LPWEFGNLCNLQFLGV 323
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 100/243 (41%), Gaps = 56/243 (23%)
Query: 750 DCS--KLKELPEDICSMRSLKELLVDGTAIEKLPQSIFH-LVKLEKLNLGKCKSLKQLPN 806
DCS KL +P +I + K+L + + LP FH L KL L L K L+ LP
Sbjct: 22 DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPA 78
Query: 807 CIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFL 866
I +L L+ L + ++ LP V L +L E
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGV-----------------------FDQLVNLAELR 115
Query: 867 IDGTAVKNLPASI-GSLSYLKAFSVGRCQFLSELPDSI-EGLASLVELQLDGTSIRHLPD 924
+D +K+LP + SL+ L S+G + L LP + + L SL EL+L ++ +P+
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 925 QIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPE-SIGILENLVILR 983
DKL L TL + N + R+PE + LE L +L+
Sbjct: 175 G-----AFDKLT------------------ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 984 LNE 986
L E
Sbjct: 212 LQE 214
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 730 LIELPSDV-SGLKHLENLILSDCSKLKELPEDICS-MRSLKELLVDGTAIEKLPQSIF-H 786
L LPS L L L L+D +KL+ LP I +++L+ L V ++ LP +F
Sbjct: 49 LSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107
Query: 787 LVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSV-GHMGNLEKLSLIG 845
LV L +L L + LK LP + L L LS Y+ ++ LP V + +L++L L
Sbjct: 108 LVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 846 CGSITTIPD-SIGHLKSLIEFLIDGTAVKNLP-ASIGSLSYLKAFSV 890
+ +P+ + L L +D +K +P + SL LK +
Sbjct: 167 -NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 43/287 (14%)
Query: 865 FLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR-HLP 923
+L + +P ++ + S L + + +P S+ L+ L +L+L + +P
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 924 DQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASIT-RMPESIGILENLVIL 982
++ +K L+ L++ +P + + L +++ N +T +P+ IG LENL IL
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 983 RLNECKQLEKLPASMGKLKSLVHL-----LMEETAVTELPESFGMLSSLMVL-------- 1029
+L+ +PA +G +SL+ L L T + + G +++ +
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 1030 --KMKKPSVKARN--------------SSAREKQKLT-------VLPTSFCNLSSLEELD 1066
MKK A N S R +T PT F N S+ LD
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLD 635
Query: 1067 AQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLP---SSLRGLSHL 1109
+ G IP + + L ILNLG+N+ ++P LRGL+ L
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 885 LKAFSVGRCQFLSELPDSIEGL-ASLVELQLDGTSIRH--LPDQIGGLK-MLDKLVMRNC 940
LK + +F ELP+S+ L ASL+ L L + LP+ K L +L ++N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN- 400
Query: 941 LSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKL 1000
N ++P ++ LV L L+ +P+S+G L
Sbjct: 401 ----------------------NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 1001 KSLVHL-LMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNL 1059
L L L E+P+ LM +K + + N E +P+ N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQE------LMYVKTLETLILDFNDLTGE------IPSGLSNC 486
Query: 1060 SSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSL 1103
++L + R+ G+IP +L +L IL L NN+F N+P+ L
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 43/287 (14%)
Query: 865 FLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR-HLP 923
+L + +P ++ + S L + + +P S+ L+ L +L+L + +P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 924 DQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASIT-RMPESIGILENLVIL 982
++ +K L+ L++ +P + + L +++ N +T +P+ IG LENL IL
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 983 RLNECKQLEKLPASMGKLKSLVHL-----LMEETAVTELPESFGMLSSLMVL-------- 1029
+L+ +PA +G +SL+ L L T + + G +++ +
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 1030 --KMKKPSVKARN--------------SSAREKQKLT-------VLPTSFCNLSSLEELD 1066
MKK A N S R +T PT F N S+ LD
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLD 638
Query: 1067 AQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLP---SSLRGLSHL 1109
+ G IP + + L ILNLG+N+ ++P LRGL+ L
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 885 LKAFSVGRCQFLSELPDSIEGL-ASLVELQLDGTSIRH--LPDQIGGLK-MLDKLVMRNC 940
LK + +F ELP+S+ L ASL+ L L + LP+ K L +L ++N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN- 403
Query: 941 LSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKL 1000
N ++P ++ LV L L+ +P+S+G L
Sbjct: 404 ----------------------NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 1001 KSLVHL-LMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNL 1059
L L L E+P+ LM +K + + N E +P+ N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQE------LMYVKTLETLILDFNDLTGE------IPSGLSNC 489
Query: 1060 SSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSL 1103
++L + R+ G+IP +L +L IL L NN+F N+P+ L
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 157/385 (40%), Gaps = 67/385 (17%)
Query: 746 LILSDCSKLKELPEDIC---SMRSLKELLVDGTAIEKLPQSIFHLVK---LEKLNLGKCK 799
L+L++ L E +C S S++ L + + +S F +K L +L+L
Sbjct: 200 LLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSY-N 258
Query: 800 SLKQLPNCIGTQLIALKELSFNYSAVEEL-PDSVGHMGNLEKLSLIGCGSITTIPDSIGH 858
+L + N + L +L+ LS Y+ ++ L P S + NL LSL + ++ S+
Sbjct: 259 NLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV--SLAS 316
Query: 859 LKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTS 918
++ +F S L YL+ ++ S ++ GL SL L L T
Sbjct: 317 HPNIDDF------------SFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT- 363
Query: 919 IRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPE-SIGILE 977
L L +SL P L TLN+ I+++ + L
Sbjct: 364 ----------FTSLQTLTNETFVSLAHSP--------LLTLNLTKNHISKIANGTFSWLG 405
Query: 978 NLVILRL--NECKQLEKLPASMGK-LKSLVHLLMEETAVTELP-ESFGMLSSLMVLKMKK 1033
L IL L NE +Q KL + L+++ + + +L SF ++ SL L +++
Sbjct: 406 QLRILDLGLNEIEQ--KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 1034 PSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGN 1093
++K + + P+ F L +L LD I D E L +LEIL+ +
Sbjct: 464 VALK----------NVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQH 513
Query: 1094 NNFCNL-----PSS----LRGLSHL 1109
NN L P L+GLSHL
Sbjct: 514 NNLARLWKRANPGGPVNFLKGLSHL 538
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 134/535 (25%), Positives = 224/535 (41%), Gaps = 64/535 (11%)
Query: 602 VSLRLLQINYTKLEGSFKFLPHELKWLQWKDCKMKTLPS-DFRPF-QLAVLDLSESGIEY 659
++ + +++N+ K+ + LP K L ++ L S F F +L VLDLS I+
Sbjct: 10 ITYQCMELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 660 LW-GSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSS 718
+ G++ + + ++L +LA + S L+KLV + + +G+L +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 719 LLHLNLRDCRNLIE---LPSDVSGLKHLENLILSD-------CSKLKELPEDICSMRSLK 768
L LN+ NLI+ LP S L +LE+L LS C+ L+ L + SL
Sbjct: 126 LKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 769 ELLVDGTAIEKLPQSIFHLVKLEKLNL-GKCKSLKQLPNCIGTQLIALKELSFNYSAVEE 827
L I+ F ++L KL L SL + CI L L + + E
Sbjct: 184 LSLNPMNFIQP---GAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGE 236
Query: 828 LPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG----TAVKNLPASIGSLS 883
+ G++ +K +L G ++T + +L ++ +ID T V + ++
Sbjct: 237 FRNE-GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 884 YLKAFSVG---------RCQFLSELPD-SIEGLASLVELQLDGTSIRHLPDQIGGLKMLD 933
+K FS C+F + P ++ L L G + D + L+ LD
Sbjct: 296 RVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLD 353
Query: 934 KLVMRNCLSLK-TLPDSIGSILTLTTLNI-VNASITRMPESIGI--LENLVILRLNECKQ 989
+ RN LS K S +L L++ N IT +G+ LE+L N KQ
Sbjct: 354 --LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQ 410
Query: 990 LEKLPASMGKLKSLVHLLMEETAV-TELPESFGMLSSLMVLKMKKPSVKARNSSAREKQK 1048
+ + + L++L++L + T F LSSL VLKM S +
Sbjct: 411 MSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------- 460
Query: 1049 LTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSL 1103
LP F L +L LD ++ P F LSSL++LN+ +N ++P +
Sbjct: 461 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From
Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich Effector
Protein From Yersinia Pestis
Length = 454
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 56/287 (19%)
Query: 824 AVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLS 883
AV L D + + +L+ +G S+ +P HL+SL+ T + LP S+ SL
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSL- 116
Query: 884 YLKAFSVGRCQFLSELPDSIEGLA-------SLVELQ---------LDGTSIRHLPDQIG 927
+ LS+LP +E L L ELQ +D S++ LPD
Sbjct: 117 ---LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 173
Query: 928 GLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILR--LN 985
L+ + L+ LP+ + ++ LT + N S+ ++P+ LE++V L
Sbjct: 174 SLEF----IAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228
Query: 986 ECKQLEKLP------ASMGKLKSLVHLL-------MEETAVTELPESFGMLSSLMV---- 1028
E +L+ LP A LK+L L + + +T+LPE L+ L V
Sbjct: 229 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288
Query: 1029 ---LKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRI 1072
L P++ N+S+ E + L LP SLEEL+ ++
Sbjct: 289 FSGLSELPPNLYYLNASSNEIRSLCDLPP------SLEELNVSNNKL 329
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 763 SMRSLKELLVDGTAIEKLPQSIF-HLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFN 821
S+ +LKEL + + LP +F L +L L+LG L LP+ + +L+ LKEL
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMC 120
Query: 822 YSAVEELPDSVGHMGNLEKLSL 843
+ + ELP + + +L L+L
Sbjct: 121 CNKLTELPRGIERLTHLTHLAL 142
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 713 VGNLSSLLHLNLRD--CRNLIELPSDV-SGLKHLENLILSDCSKLKELPEDICSMRSLKE 769
VG SL L + D L LPS V L HL+ L + C+KL ELP I + L
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTH 139
Query: 770 LLVDGTAIEKLPQSIF 785
L +D ++ +P F
Sbjct: 140 LALDQNQLKSIPHGAF 155
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 943 LKTLPDSIGSILT-LTTLNIVNASITRMPESIGILENLVILR--LNECKQLEKLPASMGK 999
L LP + LT LT L++ +T +P ++ + LV L+ C +L +LP + +
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--FDRLVHLKELFMCCNKLTELPRGIER 133
Query: 1000 LKSLVHLLMEETAVTELPE-SFGMLSSL 1026
L L HL +++ + +P +F LSSL
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 1053 PTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRG-LSHLKN 1111
P F +L +L+EL ++G F+ L+ L +L+LG N LPS++ L HLK
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 1112 LLL 1114
L +
Sbjct: 117 LFM 119
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.081, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 970 PESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPES----FGMLSS 1025
P + L L L L+ C E P L +L +L +++ A+ LP+ G L+
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 1026 LMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSS 1085
L + + SV R +F L SL+ L R+ P F L
Sbjct: 158 LFLHGNRISSVPER---------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 1086 LEILNLGNNNFCNLPSS----LRGLSHLK 1110
L L L NN LP+ LR L +L+
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLR 231
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 26/137 (18%)
Query: 876 PASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQ---------- 925
PA+ L L + RC P GLA+L L L +++ LPD
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 926 ---------------IGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMP 970
GL LD+L++ P + + L TL + +++ +P
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 971 -ESIGILENLVILRLNE 986
E++ L L LRLN+
Sbjct: 218 TEALAPLRALQYLRLND 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.081, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 970 PESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPES----FGMLSS 1025
P + L L L L+ C E P L +L +L +++ A+ LP+ G L+
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 1026 LMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSS 1085
L + + SV R +F L SL+ L R+ P F L
Sbjct: 157 LFLHGNRISSVPER---------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Query: 1086 LEILNLGNNNFCNLPSS----LRGLSHLK 1110
L L L NN LP+ LR L +L+
Sbjct: 202 LMTLYLFANNLSALPTEALAPLRALQYLR 230
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 26/137 (18%)
Query: 876 PASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQ---------- 925
PA+ L L + RC P GLA+L L L +++ LPD
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 926 ---------------IGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMP 970
GL LD+L++ P + + L TL + +++ +P
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 971 -ESIGILENLVILRLNE 986
E++ L L LRLN+
Sbjct: 217 TEALAPLRALQYLRLND 233
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 752 SKLKELPEDICS-MRSLKELLVDGTAIEKLPQSIF-HLVKLEKLNLGKCKSLKQLPNCIG 809
+KL+ LP + + L +L + I+ LP +F L KL L L + K L+ LPN +
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF 96
Query: 810 TQLIALKELSFNYSAVEELPDSV-GHMGNLEKLSL 843
+L LKEL+ + + ++ +PD + + +L+K+ L
Sbjct: 97 DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 27/191 (14%)
Query: 738 SGLKHLENLILSDCSKLKELPEDICSMRS-LKELLVDGTAIEKLPQSIFHLV-KLEKLNL 795
+GL L L L D ++L +P S L+EL + IE +P F+ V L +L+L
Sbjct: 80 NGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 796 GKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDS 855
G+ K L+ + L+ L+ L+ ++++P+ + LE+L L
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTA-LVRLEELEL------------ 185
Query: 856 IGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLD 915
G+ LI P S L+ L+ + Q + ++ + L SL EL L
Sbjct: 186 SGNRLDLIR-----------PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 916 GTSIRHLPDQI 926
++ LP +
Sbjct: 235 HNNLMSLPHDL 245
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 896 LSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILT 955
L+E+P SI + LQ + + D L+ L+ L + L K + + +
Sbjct: 26 LAEVPASIPVNTRYLNLQENSIQVIR-TDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 956 LTTLNIVNASITRMP-ESIGILENLVILRLNECKQLEKLPA-SMGKLKSLVHLLMEETAV 1013
L TL + + +T +P ++ L L L L +E +P+ + ++ SL L + E
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 1014 TEL--PESFGMLSSLMVLKMKKPSVK-ARNSSAR---EKQKLT------VLPTSFCNLSS 1061
E +F L +L L + ++K N +A E+ +L+ + P SF L+S
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 1062 LEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSL 1103
L +L ++ + F+ L SLE LNL +NN +LP L
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 26/137 (18%)
Query: 876 PASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQ---------- 925
P + L +L + RC P GLA+L L L +++ LPD
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 926 ---------------IGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMP 970
GL LD+L++ + P + + L TL + +++ +P
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 971 ESIGI-LENLVILRLNE 986
+ + L +L LRLN+
Sbjct: 217 AEVLVPLRSLQYLRLND 233
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 970 PESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPES----FGMLSS 1025
P + L +L L L+ C E P L +L +L +++ + LP++ G L+
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 1026 LMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSS 1085
L + + PSV +F L SL+ L + P F L
Sbjct: 157 LFLHGNRIPSVPEH---------------AFRGLHSLDRLLLHQNHVARVHPHAFRDLGR 201
Query: 1086 LEILNLGNNNFCNLPSS----LRGLSHLK 1110
L L L NN LP+ LR L +L+
Sbjct: 202 LMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 27/191 (14%)
Query: 738 SGLKHLENLILSDCSKLKELPEDICSMRS-LKELLVDGTAIEKLPQSIFHLV-KLEKLNL 795
+GL L L L D ++L +P S L+EL + IE +P F+ V L +L+L
Sbjct: 80 NGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 796 GKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDS 855
G+ K L+ + L+ L+ L+ ++++P+ + LE+L L
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTA-LVRLEELEL------------ 185
Query: 856 IGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLD 915
G+ LI P S L+ L+ + Q + ++ + L SL EL L
Sbjct: 186 SGNRLDLIR-----------PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 916 GTSIRHLPDQI 926
++ LP +
Sbjct: 235 HNNLMSLPHDL 245
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 1051 VLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSL 1103
+ P SF L+SL +L ++ + F+ L SLE LNL +NN +LP L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 957 TTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTEL 1016
TT++ + +P I + ++L NE ++ G+L LV L ++ +T +
Sbjct: 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGI 69
Query: 1017 -PESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGK 1075
P +F S + L++ + +K ++ F L L+ L+ +I
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKM------------FLGLHQLKTLNLYDNQISCV 117
Query: 1076 IPDDFEKLSSLEILNLGNNNF-CN 1098
+P FE L+SL LNL +N F CN
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCN 141
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 879 IGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIG-GLKMLDKLVM 937
G L +L + R Q P++ EG + + ELQL I+ + +++ GL L L +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 938 RNCLSLKTLPDSIGSILTLTTLNIV 962
+ +P S + +LT+LN+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NNN LP+ L GL +L LLL
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NNN LP+ L GL +L LLL
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NNN LP+ L GL +L LLL
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 753 KLKELPEDICS-MRSLKELLVDGTAIEKLPQSIFH-LVKLEKLNLGKCKSLKQLPNCIGT 810
+L +P ++ + MR+L L + IE++P +F L LE + G K L+Q+P I
Sbjct: 134 RLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNK-LRQMPRGIFG 191
Query: 811 QLIALKELSFNYSAVEELPDSV-GHMGNLEKLSL 843
++ LK+L+ + ++ +PD + + +L+K+ L
Sbjct: 192 KMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NNN LP+ L GL +L LLL
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 142
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NNN LP+ L GL +L LLL
Sbjct: 143 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 988 KQLEKLPASMGKLKSLVHL------------LMEETAVTELP---------ESFGMLSSL 1026
+QL LP + K +++HL LM T +T+L + G L L
Sbjct: 20 RQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 1027 MVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSL-----------EELDAQGWRIGGK 1075
L + +++ + LTVL SF L+SL +EL +G +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 1076 IPDDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
P LE L+L NN LP+ L GL +L LLL
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 988 KQLEKLPASMGKLKSLVHL------------LMEETAVTELP---------ESFGMLSSL 1026
+QL LP + K +++HL LM T +T+L + G L L
Sbjct: 20 RQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 1027 MVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSL-----------EELDAQGWRIGGK 1075
L + +++ + LTVL SF L+SL +EL +G +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 1076 IPDDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
P LE L+L NN LP+ L GL +L LLL
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 162/389 (41%), Gaps = 55/389 (14%)
Query: 760 DICSMRSLKELLVDGTAIEKLPQSIFHLVK------LEKLNLGKCKSLKQLPNCIGTQLI 813
DI + SLK+L + I++ FH + L + LG + K C+
Sbjct: 171 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL---CLELANT 227
Query: 814 ALKELSFNYSAVEELPDSVGHMG----NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG 869
+++ LS + S + ++ +G NL L L DS L L F ++
Sbjct: 228 SIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 870 TAVKNL-PASIGSLSYLKAFSVGRCQF-----LSELPD----SIEGLASLVELQLDGTSI 919
+++L S+ L ++ ++ R L+ LP S + L L L ++ I
Sbjct: 287 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 346
Query: 920 RHL-PDQIGGLKMLDKLVMRNCL-SLKTLPDSIGSILTLTTLNIVNASITRMP--ES--- 972
+ + GL L L + N SL+TL + L + L+I+N + ++ ES
Sbjct: 347 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 406
Query: 973 --IGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELP-ESFGMLSSLMVL 1029
+G LE ++ L LNE Q E L+++ + + +L SF ++ SL L
Sbjct: 407 SWLGHLE-VLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 464
Query: 1030 KMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEIL 1089
+++ ++K +SS P+ F L +L LD I D E L LEIL
Sbjct: 465 MLRRVALKNVDSS----------PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 514
Query: 1090 NLGNNNFCNL-----PSS----LRGLSHL 1109
+L +NN L P L+GLSHL
Sbjct: 515 DLQHNNLARLWKHANPGGPIYFLKGLSHL 543
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 885 LKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLK 944
+++ ++ + F + ++ + L EL L T + LP + GL L KLV+
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Query: 945 TLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQ--LEKLPASMGKLKS 1002
S + +LT L+I + R+ G LENL LR + +E +L++
Sbjct: 316 LCQISASNFPSLTHLSI-KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 1003 LVHL----LMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCN 1058
L HL L ++ E+F L +L + +K +++ + F N
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-----------PFQN 423
Query: 1059 LSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNF----CNLPSSLRGLSHLKNLLL 1114
L L+ L+ + F+ L +L+ LNL N+F +SL+ L L+ L+L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 1115 PYC 1117
+C
Sbjct: 484 SFC 486
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three
Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three
Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 162/389 (41%), Gaps = 55/389 (14%)
Query: 760 DICSMRSLKELLVDGTAIEKLPQSIFHLVK------LEKLNLGKCKSLKQLPNCIGTQLI 813
DI + SLK+L + I++ FH + L + LG + K C+
Sbjct: 176 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL---CLELANT 232
Query: 814 ALKELSFNYSAVEELPDSVGHMG----NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG 869
+++ LS + S + ++ +G NL L L DS L L F ++
Sbjct: 233 SIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 870 TAVKNL-PASIGSLSYLKAFSVGRCQF-----LSELPD----SIEGLASLVELQLDGTSI 919
+++L S+ L ++ ++ R L+ LP S + L L L ++ I
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 351
Query: 920 RHL-PDQIGGLKMLDKLVMRNCL-SLKTLPDSIGSILTLTTLNIVNASITRMP--ES--- 972
+ + GL L L + N SL+TL + L + L+I+N + ++ ES
Sbjct: 352 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 411
Query: 973 --IGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELP-ESFGMLSSLMVL 1029
+G LE ++ L LNE Q E L+++ + + +L SF ++ SL L
Sbjct: 412 SWLGHLE-VLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 469
Query: 1030 KMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEIL 1089
+++ ++K +SS P+ F L +L LD I D E L LEIL
Sbjct: 470 MLRRVALKNVDSS----------PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 519
Query: 1090 NLGNNNFCNL-----PSS----LRGLSHL 1109
+L +NN L P L+GLSHL
Sbjct: 520 DLQHNNLARLWKHANPGGPIYFLKGLSHL 548
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 161/389 (41%), Gaps = 55/389 (14%)
Query: 760 DICSMRSLKELLVDGTAIEKLPQSIFHLVK------LEKLNLGKCKSLKQLPNCIGTQLI 813
DI + SLK+L + I++ FH + L + LG + K C+
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL---CLELANT 222
Query: 814 ALKELSFNYSAVEELPDSVGHMG----NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDG 869
+++ LS + S + ++ +G NL L L DS L L F ++
Sbjct: 223 SIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 870 TAVKNL-PASIGSLSYLKAFSVGRCQF-----LSELPD----SIEGLASLVELQLDGTSI 919
+++L S+ L ++ ++ R L+ LP S + L L L ++ I
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 920 RHL-PDQIGGLKMLDKLVMRNCL-SLKTLPDSIGSILTLTTLNIVNASITRMPES----- 972
+ + GL L L + N SL+TL + L + L+I+N + ++ +
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 973 --IGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELP-ESFGMLSSLMVL 1029
+G LE ++ L LNE Q E L+++ + + +L SF ++ SL L
Sbjct: 402 SWLGHLE-VLDLGLNEIGQ-ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 1030 KMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEIL 1089
+++ ++K +SS P+ F L +L LD I D E L LEIL
Sbjct: 460 MLRRVALKNVDSS----------PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 1090 NLGNNNFCNL-----PSS----LRGLSHL 1109
+L +NN L P L+GLSHL
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHL 538
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 27/119 (22%)
Query: 706 LTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMR 765
+ +IH S N + L LNL D NL ELP+DV ++ D S+
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISR------------ 211
Query: 766 SLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSA 824
T I LP + L L+KL +LK+LP +L+AL E S Y +
Sbjct: 212 ---------TRIHSLPS--YGLENLKKLRARSTYNLKKLPTL--EKLVALMEASLTYPS 257
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 57/241 (23%)
Query: 688 DLSEHQKLEKLVLERCCRLTKIHE-SVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENL 746
++S++ LE + + L K+HE + ++LL++N P L +L+ L
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN----------PEAFQNLPNLQYL 109
Query: 747 ILSDCSKLKELPEDICSMRSLKELLVD----------------------------GTAIE 778
++S+ + +K LP D+ + SL+++L+D I+
Sbjct: 110 LISN-TGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 779 KLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNL 838
++ S F+ +L++LNL +L++LPN + L + + + LP S G + NL
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYG-LENL 225
Query: 839 EKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSE 898
+KL ++ +P ++ L +L+E AS+ S+ AF+ R Q +SE
Sbjct: 226 KKLRARSTYNLKKLP-TLEKLVALME------------ASLTYPSHCCAFANWRRQ-ISE 271
Query: 899 L 899
L
Sbjct: 272 L 272
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 988 KQLEKLPASMGKLKSLVHL------------LMEETAVTELP---------ESFGMLSSL 1026
+QL LP + K +++HL LM T +T+L + G L L
Sbjct: 20 RQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 1027 MVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSL-----------EELDAQGWRIGGK 1075
L + +++ + LTVL SF L+SL +EL +G +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 1076 IPDDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
P LE L+L NN LP+ L GL +L LLL
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 988 KQLEKLPASMGKLKSLVHL------------LMEETAVTELP---------ESFGMLSSL 1026
+QL LP + K +++HL LM T +T+L + G L L
Sbjct: 20 RQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 1027 MVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSL-----------EELDAQGWRIGGK 1075
L + +++ + LTVL SF L+SL +EL +G +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 1076 IPDDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
P LE L+L NN LP+ L GL +L LLL
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 712 SVGNLSSLLHLNLRDCRNLIELPSDVS--GLKHLENLILSDCSKLKELPEDICSMRSLKE 769
S N S L L+L C IE D + GL HL NLIL+ P + SL+
Sbjct: 51 SFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 770 LLVDGT---AIEKLPQSIFHLVKLEKLNLGK-----CKSLKQLPNCIGTQLIALKELSFN 821
L+ T ++E P I L+ L+KLN+ CK N T L+ + +LS+N
Sbjct: 109 LVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHV-DLSYN 163
Query: 822 Y 822
Y
Sbjct: 164 Y 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1019 SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP-TSFCNLSSLEELDAQGWRIGGKIP 1077
S L SL +L P++ + S +LT LP + L L+EL +G + P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 1078 DDFEKLSSLEILNLGNNNFCNLPSS-LRGLSHLKNLLL 1114
LE L+L NN+ LP+ L GL +L LLL
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 16 DVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPXXXXXXXXXXXXXXX 75
D+F+S ED D + L ++L G V+ DD+ L GD +
Sbjct: 22 DIFISHAWEDKADFV-EALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80
Query: 76 XXPNYGSSRWCLEELAKICELN----RLILPVFYKVDPSDV 112
++ W +EL + +L ILP+++KV +V
Sbjct: 81 LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 712 SVGNLSSLLHLNLRDCRNLIELPSDVS--GLKHLENLILSDCSKLKELPEDICSMRSLKE 769
S N S L L+L C IE D + GL HL NLIL+ P + SL+
Sbjct: 46 SFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 103
Query: 770 LLVDGT---AIEKLPQSIFHLVKLEKLNLGK-----CKSLKQLPNCIGTQLIALKELSFN 821
L+ T ++E P I L+ L+KLN+ CK N T L+ + +LS+N
Sbjct: 104 LVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHV-DLSYN 158
Query: 822 Y 822
Y
Sbjct: 159 Y 159
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 100/249 (40%), Gaps = 47/249 (18%)
Query: 742 HLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQ--------SIFH--LVKLE 791
H+ L++ D + L LP +R+L+ V G + LP SIF L L
Sbjct: 62 HITTLVIPD-NNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLP 117
Query: 792 KLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGC----- 846
L G CK G QL +L L ++EL S + +L L C
Sbjct: 118 ALPSGLCKLW-----IFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAY 169
Query: 847 -GSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEG 905
+T++P L+ E + + +LP L L A++ R L LP
Sbjct: 170 NNQLTSLPMLPSGLQ---ELSVSDNQLASLPTLPSELYKLWAYN-NRLTSLPALP----- 220
Query: 906 LASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCL-SLKTLPDSIGSILTLTTLNIVNA 964
+ L EL + G + LP LK L +V N L SL LP L +L++
Sbjct: 221 -SGLKELIVSGNRLTSLPVLPSELKEL--MVSGNRLTSLPMLPSG------LLSLSVYRN 271
Query: 965 SITRMPESI 973
+TR+PES+
Sbjct: 272 QLTRLPESL 280
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 971 ESIGILENL--VILRLNECKQLEKLPASMGKLKSLVHLLMEETAV-----------TELP 1017
E+ G L L +IL++N+ K+L K+ ++KSL L + + +V T+
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 1018 ESFGMLSSLM---VLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGG 1074
S M S+++ + + P +K + K+ +P L +L+EL+ ++
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLD---LHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Query: 1075 KIPDD-FEKLSSLEILNLGNNNF-CNLP 1100
+PD F++L+SL+ + L N + C+ P
Sbjct: 459 -VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 88 EELAKICELNRLILPVFYKVDPSDVRRQQGPFKQDFERHQD 128
+E+ K+ E R I P+ ++ PSDV+ PF+ +FE +
Sbjct: 225 KEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNN 265
>pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 88 EELAKICELNRLILPVFYKVDPSDVRRQQGPFKQDFERHQD 128
+E+ K+ E R I P+ ++ PSDV+ PF+ +FE +
Sbjct: 218 KEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNN 258
>pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 88 EELAKICELNRLILPVFYKVDPSDVRRQQGPFKQDFERHQD 128
+E+ K+ E R I P+ ++ PSDV+ PF+ +FE +
Sbjct: 169 KEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNN 209
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 801 LKQLPNCIGTQLIALKELSFNYSAVEELPDSV-GHMGNLEKLSLIGCGSITTIPDSI-GH 858
L+ LPN + +L LKEL + ++ LPD V + NL L+L + ++P +
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVFDK 155
Query: 859 LKSLIEFLIDGTAVKNLPASI-GSLSYLKAFSVGRCQFLSELPDSI 903
L +L E + +++LP + L+ LK + + Q L +PD +
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGV 200
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 712 SVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILS-----DCSKLK----ELPEDIC 762
S NL L + L +C N +LP + L L++L ++ ++LK L +D
Sbjct: 486 SWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 763 SMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKC--KSLKQLPNCIGTQLIALKELSF 820
+ ++ +E+ P S L K KL L C ++ L GT + L +L
Sbjct: 546 TGPKIQIFYXGYNNLEEFPASA-SLQKXVKLGLLDCVHNKVRHL-EAFGTN-VKLTDLKL 602
Query: 821 NYSAVEELPD 830
+Y+ +EE+P+
Sbjct: 603 DYNQIEEIPE 612
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 34/262 (12%)
Query: 733 LPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEK 792
LPS + G+ L+ L+L+ S + + S SL++L + G + KL L KLE
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN-MRKLDLGTRCLEKLEN 350
Query: 793 LN-LGKCKSLKQLPNCIGTQLIALKELSF-NYSAVEELPDSVGHMGNLEKLSLIGCGSIT 850
L L S + +C QL L+ L + N S E L LE + C +
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL--------GLEDQAFKECPQLE 402
Query: 851 TIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLV 910
+ + HL VK + +L L+ ++ C + + GL L
Sbjct: 403 LLDVAFTHLH-----------VKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLR 451
Query: 911 ELQLDGTSIR-------HLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVN 963
L L G S + +L +G L++ L++ +C L + + + L++ +
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEI---LILSSCNLLSIDQQAFHGLRNVNHLDLSH 508
Query: 964 ASITRMPESIGILENLVILRLN 985
S+T +S+ L +L L LN
Sbjct: 509 NSLTG--DSMDALSHLKGLYLN 528
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,189,616
Number of Sequences: 62578
Number of extensions: 1395050
Number of successful extensions: 4252
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 4003
Number of HSP's gapped (non-prelim): 227
length of query: 1382
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1271
effective length of database: 8,027,179
effective search space: 10202544509
effective search space used: 10202544509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)