Query 000630
Match_columns 1382
No_of_seqs 1143 out of 7362
Neff 9.6
Searched_HMMs 46136
Date Mon Apr 1 21:03:07 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-123 6E-128 1232.0 91.3 730 1-797 1-756 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-58 3.5E-63 576.8 32.0 603 185-920 161-807 (889)
3 PLN00113 leucine-rich repeat r 100.0 5.8E-53 1.3E-57 564.7 33.3 659 602-1307 69-776 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.7E-47 5.8E-52 510.1 33.0 524 646-1186 70-606 (968)
5 PLN03194 putative disease resi 100.0 1.1E-39 2.3E-44 318.9 17.5 154 10-174 22-178 (187)
6 PF00931 NB-ARC: NB-ARC domain 100.0 5.9E-37 1.3E-41 350.4 12.0 274 187-469 1-284 (287)
7 KOG0472 Leucine-rich repeat pr 100.0 3.5E-37 7.7E-42 326.5 -10.6 450 646-1120 46-541 (565)
8 KOG0472 Leucine-rich repeat pr 100.0 4.4E-35 9.6E-40 310.6 -10.4 471 693-1186 45-540 (565)
9 KOG4194 Membrane glycoprotein 100.0 8.3E-32 1.8E-36 298.1 8.1 364 742-1116 79-448 (873)
10 KOG4194 Membrane glycoprotein 100.0 6.9E-31 1.5E-35 290.8 7.1 382 625-1010 54-448 (873)
11 KOG0444 Cytoskeletal regulator 100.0 3.1E-32 6.7E-37 302.2 -4.9 382 716-1135 6-393 (1255)
12 KOG0444 Cytoskeletal regulator 100.0 2.4E-31 5.2E-36 295.2 -1.9 367 739-1146 5-380 (1255)
13 KOG0618 Serine/threonine phosp 100.0 2.1E-31 4.5E-36 311.7 -5.6 496 630-1161 5-510 (1081)
14 KOG0618 Serine/threonine phosp 100.0 1.9E-31 4.1E-36 312.0 -7.5 452 650-1136 3-460 (1081)
15 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.4E-27 270.0 24.9 401 832-1246 554-1006(1153)
16 PRK15387 E3 ubiquitin-protein 99.8 1.7E-18 3.7E-23 212.8 15.6 263 788-1125 201-463 (788)
17 PRK15387 E3 ubiquitin-protein 99.8 6.6E-18 1.4E-22 207.7 16.3 262 836-1168 201-462 (788)
18 smart00255 TIR Toll - interleu 99.7 8.8E-18 1.9E-22 168.9 12.8 132 14-147 1-139 (140)
19 PF01582 TIR: TIR domain; Int 99.7 5.2E-19 1.1E-23 176.7 3.7 127 17-143 1-140 (141)
20 KOG4237 Extracellular matrix p 99.7 1.6E-19 3.4E-24 193.2 -4.3 390 613-1036 57-476 (498)
21 KOG4237 Extracellular matrix p 99.7 3.8E-19 8.3E-24 190.2 -1.4 409 696-1161 70-498 (498)
22 PRK15370 E3 ubiquitin-protein 99.7 2.7E-17 5.9E-22 204.2 11.0 165 741-924 178-342 (754)
23 PRK15370 E3 ubiquitin-protein 99.7 6.1E-17 1.3E-21 201.1 12.6 227 837-1125 179-405 (754)
24 PF13676 TIR_2: TIR domain; PD 99.5 1.7E-15 3.8E-20 142.3 2.4 96 17-117 1-96 (102)
25 KOG0617 Ras suppressor protein 99.5 4.2E-16 9.2E-21 147.6 -2.7 162 950-1125 29-190 (264)
26 cd00116 LRR_RI Leucine-rich re 99.5 1.2E-15 2.7E-20 177.8 -1.5 208 903-1118 77-318 (319)
27 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 145.0 -1.8 161 671-835 34-195 (264)
28 cd00116 LRR_RI Leucine-rich re 99.5 5.9E-15 1.3E-19 172.1 -1.4 254 668-941 21-318 (319)
29 PRK04841 transcriptional regul 99.4 4.1E-11 8.9E-16 160.6 25.2 303 176-506 8-335 (903)
30 PRK00411 cdc6 cell division co 99.2 1.8E-09 3.8E-14 129.4 23.0 290 177-484 25-358 (394)
31 TIGR00635 ruvB Holliday juncti 99.1 5.6E-10 1.2E-14 128.5 16.1 271 182-488 4-293 (305)
32 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 3.8E-13 119.6 26.7 292 177-484 10-350 (365)
33 KOG4658 Apoptotic ATPase [Sign 99.1 8.4E-11 1.8E-15 149.1 5.0 126 670-797 523-651 (889)
34 PF01637 Arch_ATPase: Archaeal 99.0 7E-10 1.5E-14 122.8 10.7 203 184-392 1-233 (234)
35 COG2909 MalT ATP-dependent tra 99.0 6.7E-09 1.5E-13 124.3 19.2 304 177-507 14-342 (894)
36 PRK00080 ruvB Holliday junctio 99.0 1.2E-09 2.6E-14 126.4 12.8 276 181-487 24-313 (328)
37 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 121.0 0.8 130 952-1121 282-413 (490)
38 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.6E-15 125.9 1.2 205 714-942 118-338 (505)
39 KOG3678 SARM protein (with ste 98.9 6.3E-09 1.4E-13 113.7 11.4 143 11-176 609-759 (832)
40 KOG0532 Leucine-rich repeat (L 98.9 9E-11 2E-15 132.5 -3.3 177 908-1102 76-252 (722)
41 COG4886 Leucine-rich repeat (L 98.9 2.2E-09 4.9E-14 128.7 8.4 179 738-922 113-292 (394)
42 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.4E-15 124.3 1.1 206 762-989 118-338 (505)
43 KOG1259 Nischarin, modulator o 98.9 3.9E-10 8.5E-15 117.1 1.1 135 897-1035 274-410 (490)
44 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-07 2.4E-12 107.6 20.2 182 205-397 43-242 (269)
45 COG4886 Leucine-rich repeat (L 98.9 3.9E-09 8.5E-14 126.6 8.8 168 745-940 97-265 (394)
46 PF05729 NACHT: NACHT domain 98.9 1.4E-08 3.1E-13 105.5 11.5 141 206-362 1-163 (166)
47 KOG1909 Ran GTPase-activating 98.8 2.1E-10 4.5E-15 122.8 -2.7 247 855-1119 25-310 (382)
48 KOG1187 Serine/threonine prote 98.8 4.4E-10 9.6E-15 130.1 -1.0 112 1217-1332 77-195 (361)
49 KOG1909 Ran GTPase-activating 98.8 4.2E-10 9.1E-15 120.5 -1.7 36 762-797 27-67 (382)
50 KOG0532 Leucine-rich repeat (L 98.8 3E-10 6.5E-15 128.4 -3.9 154 689-849 94-247 (722)
51 COG3899 Predicted ATPase [Gene 98.7 9.8E-08 2.1E-12 122.2 15.3 315 183-504 1-387 (849)
52 PRK06893 DNA replication initi 98.6 4.1E-07 8.9E-12 99.0 14.4 152 205-395 39-205 (229)
53 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 101.8 3.7 64 951-1014 61-126 (175)
54 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.5E-13 102.7 2.8 136 635-797 9-149 (175)
55 COG2256 MGS1 ATPase related to 98.6 4.9E-07 1.1E-11 99.8 13.9 167 183-388 25-207 (436)
56 COG3903 Predicted ATPase [Gene 98.6 2.3E-08 5E-13 111.1 3.5 280 204-504 13-315 (414)
57 PTZ00112 origin recognition co 98.5 1.6E-06 3.5E-11 104.9 15.4 209 177-397 750-986 (1164)
58 PLN03150 hypothetical protein; 98.5 2.4E-07 5.2E-12 116.0 8.4 105 695-799 420-526 (623)
59 PLN03150 hypothetical protein; 98.5 2.8E-07 6.2E-12 115.4 8.4 69 1052-1120 458-528 (623)
60 PRK13342 recombination factor 98.4 2.7E-06 5.8E-11 101.5 14.5 174 182-394 12-197 (413)
61 KOG2982 Uncharacterized conser 98.4 2.7E-07 5.8E-12 96.7 3.8 206 788-993 45-265 (418)
62 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.6E-06 7.7E-11 92.4 12.5 168 187-395 22-203 (226)
63 PRK07003 DNA polymerase III su 98.3 1.3E-05 2.8E-10 97.2 17.4 198 182-392 16-220 (830)
64 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.2E-12 112.9 0.1 194 644-848 71-267 (414)
65 PRK14949 DNA polymerase III su 98.3 2.1E-05 4.5E-10 97.6 18.2 196 182-393 16-221 (944)
66 PRK14961 DNA polymerase III su 98.3 2.9E-05 6.4E-10 90.9 18.6 192 182-389 16-216 (363)
67 PRK12402 replication factor C 98.3 1.8E-05 3.8E-10 92.9 16.9 197 182-392 15-225 (337)
68 PRK15386 type III secretion pr 98.3 3.7E-06 7.9E-11 95.9 10.3 71 953-1034 51-122 (426)
69 KOG2120 SCF ubiquitin ligase, 98.2 1.5E-08 3.2E-13 105.8 -8.2 114 689-802 206-327 (419)
70 COG1474 CDC6 Cdc6-related prot 98.2 2.9E-05 6.3E-10 89.6 17.6 202 177-393 12-238 (366)
71 TIGR01242 26Sp45 26S proteasom 98.2 1.4E-05 3E-10 94.0 15.5 175 179-387 119-328 (364)
72 KOG0531 Protein phosphatase 1, 98.2 1.8E-07 3.8E-12 112.3 -0.7 82 812-895 71-152 (414)
73 PRK05564 DNA polymerase III su 98.2 3.3E-05 7.2E-10 88.8 18.0 175 183-392 5-189 (313)
74 PTZ00202 tuzin; Provisional 98.2 2.7E-05 5.9E-10 87.8 16.0 162 178-359 258-431 (550)
75 PRK08727 hypothetical protein; 98.2 1.4E-05 3.1E-10 87.1 13.8 165 185-390 23-201 (233)
76 PRK14960 DNA polymerase III su 98.2 2.9E-05 6.4E-10 93.3 17.3 195 182-389 15-215 (702)
77 PF13191 AAA_16: AAA ATPase do 98.2 6.3E-06 1.4E-10 87.3 10.7 50 183-232 1-51 (185)
78 PF13855 LRR_8: Leucine rich r 98.2 8.8E-07 1.9E-11 73.8 3.2 59 1060-1118 1-60 (61)
79 PRK14963 DNA polymerase III su 98.2 6.2E-05 1.3E-09 90.9 19.2 194 182-390 14-214 (504)
80 PF05496 RuvB_N: Holliday junc 98.2 1.9E-05 4E-10 82.0 12.5 178 181-398 23-226 (233)
81 cd00009 AAA The AAA+ (ATPases 98.2 1.6E-05 3.6E-10 80.5 12.1 45 185-231 1-45 (151)
82 PRK04195 replication factor C 98.2 5E-05 1.1E-09 92.6 18.3 178 181-392 13-201 (482)
83 PRK07471 DNA polymerase III su 98.2 0.00016 3.4E-09 83.8 21.3 204 181-394 18-239 (365)
84 PF13173 AAA_14: AAA domain 98.1 5.4E-06 1.2E-10 81.3 7.8 119 206-354 3-127 (128)
85 PLN03025 replication factor C 98.1 2.1E-05 4.6E-10 90.6 13.3 179 182-389 13-196 (319)
86 PRK12323 DNA polymerase III su 98.1 3.7E-05 8.1E-10 92.2 15.4 200 182-390 16-222 (700)
87 PF13401 AAA_22: AAA domain; P 98.1 7.8E-06 1.7E-10 80.9 8.3 113 205-331 4-125 (131)
88 PRK08691 DNA polymerase III su 98.1 5.1E-05 1.1E-09 92.3 16.3 196 182-390 16-217 (709)
89 KOG1859 Leucine-rich repeat pr 98.1 6.5E-08 1.4E-12 112.5 -7.9 130 955-1100 165-295 (1096)
90 PRK08903 DnaA regulatory inact 98.1 4.4E-05 9.4E-10 83.6 14.5 170 184-397 21-203 (227)
91 PRK05642 DNA replication initi 98.1 4.2E-05 9.1E-10 83.5 14.2 150 206-394 46-209 (234)
92 PF14516 AAA_35: AAA-like doma 98.1 0.00049 1.1E-08 79.3 23.7 211 180-400 9-246 (331)
93 PRK14962 DNA polymerase III su 98.1 9.8E-05 2.1E-09 88.4 18.1 196 182-395 14-221 (472)
94 PF00308 Bac_DnaA: Bacterial d 98.1 6.8E-05 1.5E-09 80.8 15.2 178 184-391 11-206 (219)
95 PF08937 DUF1863: MTH538 TIR-l 98.1 7.5E-06 1.6E-10 80.2 7.1 89 15-104 1-106 (130)
96 PRK08084 DNA replication initi 98.1 8.7E-05 1.9E-09 81.1 16.1 170 183-393 24-209 (235)
97 KOG4341 F-box protein containi 98.1 2.2E-07 4.7E-12 102.3 -4.3 293 671-984 139-459 (483)
98 PRK00440 rfc replication facto 98.1 9.1E-05 2E-09 86.2 17.1 180 182-390 17-200 (319)
99 PRK14957 DNA polymerase III su 98.1 7.6E-05 1.6E-09 90.1 16.4 199 182-393 16-221 (546)
100 TIGR00678 holB DNA polymerase 98.0 0.00011 2.3E-09 77.9 15.7 89 293-389 95-187 (188)
101 KOG2028 ATPase related to the 98.0 1.8E-05 3.9E-10 85.4 9.6 144 183-360 139-292 (554)
102 PRK09112 DNA polymerase III su 98.0 0.00015 3.3E-09 83.5 17.6 201 180-394 21-241 (351)
103 PRK07940 DNA polymerase III su 98.0 0.00012 2.5E-09 85.6 16.7 192 182-393 5-213 (394)
104 PRK13341 recombination factor 98.0 6.3E-05 1.4E-09 94.3 15.3 167 182-388 28-212 (725)
105 PRK14956 DNA polymerase III su 98.0 4.9E-05 1.1E-09 89.1 13.2 195 182-388 18-217 (484)
106 PRK09087 hypothetical protein; 98.0 5.1E-05 1.1E-09 82.0 12.3 139 205-393 44-195 (226)
107 PF13855 LRR_8: Leucine rich r 98.0 5.6E-06 1.2E-10 69.0 3.8 58 694-751 2-59 (61)
108 PRK07994 DNA polymerase III su 98.0 0.00012 2.6E-09 89.7 16.8 199 182-393 16-221 (647)
109 PRK06645 DNA polymerase III su 98.0 0.00011 2.4E-09 88.2 16.1 195 182-388 21-224 (507)
110 PRK15386 type III secretion pr 98.0 2.3E-05 5.1E-10 89.4 9.7 34 1126-1161 154-187 (426)
111 TIGR02397 dnaX_nterm DNA polym 98.0 0.00016 3.4E-09 85.6 17.3 201 181-394 13-219 (355)
112 KOG4341 F-box protein containi 98.0 2.5E-07 5.5E-12 101.7 -5.8 120 1057-1191 317-443 (483)
113 KOG2120 SCF ubiquitin ligase, 97.9 2E-07 4.4E-12 97.6 -7.0 128 815-942 187-325 (419)
114 PRK14951 DNA polymerase III su 97.9 0.00023 5.1E-09 87.1 17.6 195 182-390 16-222 (618)
115 PRK14964 DNA polymerase III su 97.9 0.00018 4E-09 85.5 16.2 194 182-388 13-212 (491)
116 KOG2982 Uncharacterized conser 97.9 2.5E-06 5.4E-11 89.6 0.3 65 882-946 198-265 (418)
117 KOG1859 Leucine-rich repeat pr 97.9 2.6E-07 5.6E-12 107.7 -7.7 124 909-1036 166-291 (1096)
118 PRK03992 proteasome-activating 97.9 0.00011 2.4E-09 86.6 14.0 173 179-386 128-336 (389)
119 PRK14958 DNA polymerase III su 97.9 0.00027 5.8E-09 85.7 17.3 196 182-390 16-217 (509)
120 PRK14959 DNA polymerase III su 97.9 0.00029 6.4E-09 85.5 17.0 199 182-397 16-225 (624)
121 PRK14087 dnaA chromosomal repl 97.8 0.0002 4.3E-09 85.7 15.0 189 182-396 116-322 (450)
122 PRK14969 DNA polymerase III su 97.8 0.00053 1.1E-08 83.8 18.7 194 182-393 16-221 (527)
123 PRK05896 DNA polymerase III su 97.8 0.00025 5.5E-09 85.6 15.4 200 182-394 16-222 (605)
124 COG2255 RuvB Holliday junction 97.8 0.00022 4.8E-09 75.4 11.9 263 182-490 26-317 (332)
125 PRK14088 dnaA chromosomal repl 97.8 0.00041 8.8E-09 83.1 16.0 180 182-391 106-303 (440)
126 TIGR03689 pup_AAA proteasome A 97.8 0.00033 7.2E-09 83.7 14.9 160 181-362 181-378 (512)
127 PRK14952 DNA polymerase III su 97.8 0.00087 1.9E-08 81.9 18.7 201 182-395 13-222 (584)
128 TIGR00362 DnaA chromosomal rep 97.8 0.00069 1.5E-08 81.1 17.7 180 182-391 111-308 (405)
129 PF08357 SEFIR: SEFIR domain; 97.7 4.2E-05 9.1E-10 77.5 5.8 65 16-80 2-70 (150)
130 PRK00149 dnaA chromosomal repl 97.7 0.00043 9.2E-09 83.9 15.1 179 183-391 124-320 (450)
131 PRK14954 DNA polymerase III su 97.7 0.00046 1E-08 85.0 15.3 195 182-388 16-223 (620)
132 PRK14970 DNA polymerase III su 97.7 0.001 2.2E-08 78.6 17.9 176 182-388 17-204 (367)
133 TIGR02881 spore_V_K stage V sp 97.7 0.00033 7.1E-09 78.3 12.9 129 204-363 41-192 (261)
134 PRK14955 DNA polymerase III su 97.7 0.00045 9.7E-09 82.0 14.8 199 182-390 16-225 (397)
135 PRK09111 DNA polymerase III su 97.7 0.00062 1.3E-08 83.8 16.1 202 182-391 24-231 (598)
136 PRK07764 DNA polymerase III su 97.7 0.001 2.2E-08 84.7 18.4 194 182-388 15-216 (824)
137 KOG2543 Origin recognition com 97.7 0.0015 3.4E-08 72.1 16.6 172 181-360 5-191 (438)
138 PRK08451 DNA polymerase III su 97.6 0.0013 2.9E-08 79.0 17.5 187 182-390 14-215 (535)
139 PRK07133 DNA polymerase III su 97.6 0.0012 2.6E-08 81.7 17.2 194 182-393 18-220 (725)
140 PRK09376 rho transcription ter 97.6 6.9E-05 1.5E-09 84.6 6.1 95 206-307 170-269 (416)
141 PRK06620 hypothetical protein; 97.6 0.00042 9.2E-09 74.2 11.8 132 206-389 45-185 (214)
142 PRK12422 chromosomal replicati 97.6 0.0013 2.9E-08 78.4 17.1 175 182-386 112-306 (445)
143 PRK14950 DNA polymerase III su 97.6 0.00073 1.6E-08 84.2 15.5 197 182-393 16-221 (585)
144 PHA02544 44 clamp loader, smal 97.6 0.00044 9.5E-09 80.1 12.8 146 181-359 20-170 (316)
145 PF05673 DUF815: Protein of un 97.6 0.0022 4.7E-08 68.0 16.2 52 181-232 26-79 (249)
146 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0016 3.6E-08 78.1 17.5 175 182-387 228-429 (489)
147 PRK14086 dnaA chromosomal repl 97.6 0.001 2.2E-08 80.5 15.5 176 183-388 290-483 (617)
148 PRK06305 DNA polymerase III su 97.6 0.002 4.2E-08 77.4 17.9 195 182-388 17-217 (451)
149 cd01128 rho_factor Transcripti 97.6 7.7E-05 1.7E-09 81.2 5.4 97 205-306 16-115 (249)
150 KOG0989 Replication factor C, 97.6 0.0027 5.9E-08 68.2 16.6 181 181-387 35-224 (346)
151 PRK14953 DNA polymerase III su 97.6 0.0021 4.5E-08 77.6 17.8 192 182-393 16-220 (486)
152 PRK05707 DNA polymerase III su 97.5 0.0022 4.8E-08 73.3 16.4 94 294-393 106-203 (328)
153 PTZ00361 26 proteosome regulat 97.5 0.00042 9.2E-09 81.7 10.7 153 181-363 182-368 (438)
154 PRK06647 DNA polymerase III su 97.5 0.0038 8.2E-08 76.6 19.3 196 182-390 16-217 (563)
155 PRK14971 DNA polymerase III su 97.5 0.0029 6.2E-08 78.7 18.2 195 182-388 17-217 (614)
156 PTZ00454 26S protease regulato 97.5 0.00095 2.1E-08 78.3 13.3 177 177-387 140-351 (398)
157 PRK14948 DNA polymerase III su 97.5 0.0023 5E-08 79.4 17.3 201 182-393 16-222 (620)
158 TIGR02903 spore_lon_C ATP-depe 97.5 0.0012 2.6E-08 82.4 14.8 208 182-396 154-398 (615)
159 TIGR02639 ClpA ATP-dependent C 97.5 0.00038 8.2E-09 89.4 10.9 151 182-362 182-358 (731)
160 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00075 1.6E-08 87.2 13.5 151 182-361 187-362 (852)
161 PRK05563 DNA polymerase III su 97.5 0.0035 7.6E-08 77.3 18.3 193 181-389 15-216 (559)
162 COG5238 RNA1 Ran GTPase-activa 97.4 3.1E-05 6.8E-10 80.5 -0.6 61 1060-1120 185-255 (388)
163 CHL00095 clpC Clp protease ATP 97.4 0.00095 2.1E-08 86.8 12.4 150 182-360 179-352 (821)
164 COG5238 RNA1 Ran GTPase-activa 97.4 3.9E-05 8.4E-10 79.8 -0.4 39 712-750 25-67 (388)
165 PRK08116 hypothetical protein; 97.4 0.00098 2.1E-08 74.1 10.6 35 206-240 115-149 (268)
166 TIGR00767 rho transcription te 97.3 0.00031 6.8E-09 80.0 6.6 98 205-307 168-268 (415)
167 KOG4579 Leucine-rich repeat (L 97.3 8.4E-06 1.8E-10 75.9 -4.9 111 885-1019 29-141 (177)
168 KOG4579 Leucine-rich repeat (L 97.3 3.2E-05 7E-10 72.1 -1.7 108 788-897 53-160 (177)
169 TIGR02880 cbbX_cfxQ probable R 97.3 0.0034 7.4E-08 70.6 14.1 128 207-362 60-208 (284)
170 PRK14965 DNA polymerase III su 97.3 0.0064 1.4E-07 75.4 17.6 199 182-393 16-221 (576)
171 PRK07399 DNA polymerase III su 97.3 0.016 3.4E-07 66.0 19.3 192 183-392 5-220 (314)
172 PRK10865 protein disaggregatio 97.3 0.0015 3.2E-08 84.8 12.4 48 182-231 178-225 (857)
173 PF12799 LRR_4: Leucine Rich r 97.2 0.00028 6E-09 53.7 3.2 34 1085-1118 2-35 (44)
174 CHL00176 ftsH cell division pr 97.2 0.0042 9E-08 77.2 14.9 171 182-385 183-386 (638)
175 KOG2227 Pre-initiation complex 97.2 0.0092 2E-07 68.0 15.7 170 181-362 149-338 (529)
176 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0015 3.2E-08 85.3 11.2 152 182-362 173-349 (852)
177 TIGR01241 FtsH_fam ATP-depende 97.2 0.0026 5.6E-08 78.1 12.8 173 182-387 55-260 (495)
178 COG1222 RPT1 ATP-dependent 26S 97.2 0.0028 6E-08 69.7 11.2 170 183-387 152-357 (406)
179 CHL00181 cbbX CbbX; Provisiona 97.2 0.01 2.2E-07 66.8 16.0 128 206-363 60-210 (287)
180 PF12799 LRR_4: Leucine Rich r 97.2 0.00029 6.2E-09 53.6 2.5 41 1060-1101 1-41 (44)
181 PRK08181 transposase; Validate 97.2 0.0099 2.2E-07 65.7 15.6 35 206-240 107-141 (269)
182 PF00004 AAA: ATPase family as 97.1 0.0021 4.5E-08 63.5 9.4 23 208-230 1-23 (132)
183 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.5E-09 90.3 1.4 35 714-750 170-204 (699)
184 PF05621 TniB: Bacterial TniB 97.1 0.0091 2E-07 65.6 14.4 194 182-390 34-258 (302)
185 PRK07952 DNA replication prote 97.1 0.0022 4.8E-08 69.7 9.6 50 190-239 84-133 (244)
186 PRK08769 DNA polymerase III su 97.1 0.019 4.1E-07 65.1 17.3 93 294-394 113-209 (319)
187 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.3E-09 89.5 1.6 106 645-752 122-231 (699)
188 COG1373 Predicted ATPase (AAA+ 97.1 0.0046 9.9E-08 73.0 12.8 135 188-358 23-163 (398)
189 COG0593 DnaA ATPase involved i 97.1 0.0032 7E-08 72.5 10.9 133 204-363 112-258 (408)
190 PRK12377 putative replication 97.0 0.0029 6.3E-08 68.9 10.0 36 205-240 101-136 (248)
191 PF10443 RNA12: RNA12 protein; 97.0 0.035 7.7E-07 63.8 18.8 105 295-403 149-288 (431)
192 TIGR02639 ClpA ATP-dependent C 97.0 0.031 6.8E-07 72.0 20.8 49 182-230 454-509 (731)
193 PRK08058 DNA polymerase III su 97.0 0.013 2.8E-07 67.6 15.5 164 183-361 6-181 (329)
194 PRK11034 clpA ATP-dependent Cl 97.0 0.0027 5.8E-08 80.4 10.2 152 182-362 186-362 (758)
195 smart00382 AAA ATPases associa 96.9 0.0017 3.8E-08 65.0 7.0 34 206-239 3-36 (148)
196 TIGR00602 rad24 checkpoint pro 96.9 0.0057 1.2E-07 75.4 12.1 50 181-230 83-135 (637)
197 COG0466 Lon ATP-dependent Lon 96.9 0.01 2.2E-07 71.3 13.3 158 182-362 323-508 (782)
198 COG3267 ExeA Type II secretory 96.9 0.025 5.4E-07 59.8 14.6 180 203-395 49-247 (269)
199 TIGR01243 CDC48 AAA family ATP 96.9 0.0099 2.2E-07 76.8 14.5 50 182-231 178-238 (733)
200 PRK09183 transposase/IS protei 96.8 0.0035 7.7E-08 69.4 8.8 35 205-239 102-136 (259)
201 PRK11331 5-methylcytosine-spec 96.8 0.0031 6.7E-08 73.4 8.6 55 182-240 175-231 (459)
202 KOG0991 Replication factor C, 96.8 0.015 3.3E-07 59.7 12.2 48 182-231 27-74 (333)
203 PRK11034 clpA ATP-dependent Cl 96.8 0.042 9.1E-07 69.8 19.1 49 182-230 458-513 (758)
204 PRK10536 hypothetical protein; 96.8 0.011 2.4E-07 63.6 11.6 52 182-237 55-108 (262)
205 KOG1644 U2-associated snRNP A' 96.8 0.0025 5.4E-08 64.3 6.2 56 671-727 43-98 (233)
206 PRK06526 transposase; Provisio 96.8 0.003 6.4E-08 69.5 7.6 35 205-239 98-132 (254)
207 TIGR01243 CDC48 AAA family ATP 96.8 0.018 3.8E-07 74.6 15.6 172 182-387 453-657 (733)
208 PF01695 IstB_IS21: IstB-like 96.8 0.0016 3.5E-08 67.5 4.9 36 205-240 47-82 (178)
209 PRK06871 DNA polymerase III su 96.7 0.04 8.6E-07 62.6 16.2 178 190-389 10-199 (325)
210 PRK07993 DNA polymerase III su 96.7 0.041 8.9E-07 63.2 16.5 183 189-390 9-201 (334)
211 PRK06090 DNA polymerase III su 96.7 0.073 1.6E-06 60.3 18.1 181 190-393 11-201 (319)
212 PRK06835 DNA replication prote 96.7 0.0041 8.9E-08 70.9 8.1 35 206-240 184-218 (329)
213 KOG1026 Nerve growth factor re 96.7 0.00044 9.5E-09 84.2 0.2 76 1228-1306 499-581 (774)
214 PLN00020 ribulose bisphosphate 96.7 0.02 4.4E-07 64.3 12.8 30 203-232 146-175 (413)
215 KOG0192 Tyrosine kinase specif 96.6 0.00082 1.8E-08 77.7 1.9 80 1226-1307 52-133 (362)
216 PRK09361 radB DNA repair and r 96.6 0.0087 1.9E-07 65.4 9.5 48 193-240 11-58 (225)
217 KOG1644 U2-associated snRNP A' 96.6 0.0026 5.7E-08 64.1 4.7 103 645-750 42-149 (233)
218 PRK10787 DNA-binding ATP-depen 96.5 0.05 1.1E-06 69.8 17.1 76 158-233 287-377 (784)
219 TIGR00763 lon ATP-dependent pr 96.5 0.057 1.2E-06 70.0 17.7 52 182-233 320-375 (775)
220 PRK06964 DNA polymerase III su 96.5 0.18 4E-06 57.8 19.6 90 294-393 132-225 (342)
221 KOG0733 Nuclear AAA ATPase (VC 96.5 0.035 7.6E-07 65.2 13.6 49 182-230 190-248 (802)
222 PRK04132 replication factor C 96.5 0.073 1.6E-06 67.7 17.7 150 213-390 574-728 (846)
223 PRK00771 signal recognition pa 96.5 0.036 7.8E-07 65.6 14.1 29 204-232 94-122 (437)
224 KOG2739 Leucine-rich acidic nu 96.5 0.0019 4.1E-08 68.2 3.0 65 1056-1120 61-129 (260)
225 PF04665 Pox_A32: Poxvirus A32 96.5 0.0045 9.7E-08 66.3 6.0 34 207-240 15-48 (241)
226 TIGR02640 gas_vesic_GvpN gas v 96.5 0.042 9E-07 61.3 14.0 37 190-230 10-46 (262)
227 PRK06921 hypothetical protein; 96.4 0.0034 7.5E-08 69.6 4.9 36 205-240 117-153 (266)
228 PRK14974 cell division protein 96.4 0.046 1E-06 62.4 14.0 29 204-232 139-167 (336)
229 KOG0735 AAA+-type ATPase [Post 96.4 0.032 6.9E-07 66.7 12.7 161 205-393 431-616 (952)
230 TIGR00064 ftsY signal recognit 96.4 0.045 9.7E-07 61.0 13.4 36 204-239 71-106 (272)
231 KOG0744 AAA+-type ATPase [Post 96.4 0.0035 7.6E-08 67.5 4.3 80 205-306 177-262 (423)
232 PHA00729 NTP-binding motif con 96.3 0.0055 1.2E-07 64.9 5.6 27 204-230 16-42 (226)
233 PRK08939 primosomal protein Dn 96.3 0.019 4.1E-07 65.0 10.3 36 205-240 156-191 (306)
234 COG2607 Predicted ATPase (AAA+ 96.3 0.032 6.9E-07 58.1 10.7 54 182-235 60-115 (287)
235 PF13177 DNA_pol3_delta2: DNA 96.3 0.029 6.3E-07 57.3 10.5 44 186-230 1-44 (162)
236 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.6E-07 63.5 8.1 44 197-240 4-47 (209)
237 KOG1514 Origin recognition com 96.3 0.14 3.1E-06 61.7 17.2 196 180-395 394-623 (767)
238 cd01120 RecA-like_NTPases RecA 96.2 0.013 2.8E-07 60.4 8.0 34 207-240 1-34 (165)
239 PRK07261 topology modulation p 96.2 0.0083 1.8E-07 62.0 6.4 23 207-229 2-24 (171)
240 COG1618 Predicted nucleotide k 96.2 0.0047 1E-07 60.1 4.0 38 206-243 6-45 (179)
241 PRK08118 topology modulation p 96.2 0.0079 1.7E-07 61.8 6.1 32 207-238 3-37 (167)
242 PF13207 AAA_17: AAA domain; P 96.2 0.0039 8.4E-08 60.5 3.6 23 207-229 1-23 (121)
243 KOG0730 AAA+-type ATPase [Post 96.2 0.035 7.6E-07 66.2 11.9 148 186-364 438-617 (693)
244 COG2812 DnaX DNA polymerase II 96.2 0.046 9.9E-07 65.3 12.9 186 182-386 16-213 (515)
245 PRK11889 flhF flagellar biosyn 96.2 0.059 1.3E-06 61.6 13.1 29 204-232 240-268 (436)
246 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0049 1.1E-07 69.8 4.6 49 183-231 52-104 (361)
247 PRK12608 transcription termina 96.2 0.0097 2.1E-07 67.7 6.9 105 194-306 123-232 (380)
248 PF02562 PhoH: PhoH-like prote 96.2 0.0076 1.6E-07 63.1 5.6 125 188-332 6-156 (205)
249 cd01394 radB RadB. The archaea 96.1 0.021 4.5E-07 62.1 9.2 49 192-240 6-54 (218)
250 cd01133 F1-ATPase_beta F1 ATP 96.1 0.0072 1.6E-07 66.1 5.5 40 205-244 69-108 (274)
251 COG0542 clpA ATP-binding subun 96.1 0.021 4.5E-07 70.9 9.7 119 182-318 491-619 (786)
252 PRK10865 protein disaggregatio 96.1 0.028 6E-07 73.3 11.4 50 182-231 568-624 (857)
253 TIGR00959 ffh signal recogniti 96.1 0.087 1.9E-06 62.3 14.4 26 205-230 99-124 (428)
254 cd01131 PilT Pilus retraction 96.1 0.012 2.6E-07 62.6 6.7 109 206-333 2-110 (198)
255 KOG2228 Origin recognition com 96.1 0.041 8.9E-07 60.2 10.5 172 181-360 23-217 (408)
256 KOG4278 Protein tyrosine kinas 96.0 0.0033 7.2E-08 72.9 2.2 77 1228-1309 280-358 (1157)
257 COG1223 Predicted ATPase (AAA+ 96.0 0.088 1.9E-06 55.3 12.1 171 182-386 121-318 (368)
258 KOG0728 26S proteasome regulat 96.0 0.14 3E-06 53.3 13.4 144 185-362 150-331 (404)
259 COG1484 DnaC DNA replication p 96.0 0.032 7E-07 61.5 9.7 37 204-240 104-140 (254)
260 cd01393 recA_like RecA is a b 96.0 0.028 6E-07 61.5 9.3 48 193-240 7-60 (226)
261 COG0470 HolB ATPase involved i 96.0 0.046 1E-06 63.7 11.8 49 183-231 2-50 (325)
262 TIGR03346 chaperone_ClpB ATP-d 96.0 0.077 1.7E-06 69.6 14.7 51 181-231 564-621 (852)
263 PRK06696 uridine kinase; Valid 96.0 0.013 2.8E-07 63.7 6.5 46 187-232 3-49 (223)
264 PRK04296 thymidine kinase; Pro 95.9 0.0096 2.1E-07 62.8 5.2 114 206-334 3-118 (190)
265 KOG1947 Leucine rich repeat pr 95.9 0.0013 2.8E-08 81.7 -1.8 62 715-776 186-254 (482)
266 PRK10867 signal recognition pa 95.9 0.18 4E-06 59.6 16.0 29 204-232 99-127 (433)
267 TIGR01425 SRP54_euk signal rec 95.9 0.19 4.2E-06 59.0 16.0 29 204-232 99-127 (429)
268 KOG2739 Leucine-rich acidic nu 95.9 0.0077 1.7E-07 63.7 4.0 107 715-823 41-153 (260)
269 CHL00095 clpC Clp protease ATP 95.9 0.096 2.1E-06 68.5 15.1 50 182-231 509-565 (821)
270 KOG0741 AAA+-type ATPase [Post 95.8 0.077 1.7E-06 61.3 11.9 125 203-360 536-684 (744)
271 PF07693 KAP_NTPase: KAP famil 95.8 0.24 5.3E-06 57.6 16.9 77 188-264 2-81 (325)
272 PRK12724 flagellar biosynthesi 95.8 0.18 4E-06 58.6 15.2 25 205-229 223-247 (432)
273 KOG1947 Leucine rich repeat pr 95.8 0.0017 3.7E-08 80.6 -1.4 34 669-702 187-223 (482)
274 TIGR03345 VI_ClpV1 type VI sec 95.8 0.028 6.1E-07 72.9 9.6 50 182-231 566-622 (852)
275 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.029 6.2E-07 61.8 8.3 47 194-240 8-60 (235)
276 KOG0731 AAA+-type ATPase conta 95.7 0.17 3.7E-06 62.6 15.2 172 182-389 311-520 (774)
277 PRK05541 adenylylsulfate kinas 95.7 0.025 5.5E-07 59.0 7.3 37 204-240 6-42 (176)
278 PF07728 AAA_5: AAA domain (dy 95.7 0.013 2.8E-07 58.4 4.7 22 208-229 2-23 (139)
279 cd00983 recA RecA is a bacter 95.6 0.027 5.9E-07 63.6 7.5 49 192-240 41-90 (325)
280 cd03115 SRP The signal recogni 95.6 0.058 1.3E-06 56.1 9.5 26 207-232 2-27 (173)
281 PRK09354 recA recombinase A; P 95.6 0.031 6.6E-07 63.6 7.6 101 192-304 46-148 (349)
282 cd03238 ABC_UvrA The excision 95.6 0.042 9.1E-07 56.8 8.0 23 205-227 21-43 (176)
283 PRK05703 flhF flagellar biosyn 95.6 0.19 4.2E-06 59.8 14.7 26 205-230 221-246 (424)
284 TIGR02012 tigrfam_recA protein 95.5 0.029 6.2E-07 63.3 7.2 48 193-240 42-90 (321)
285 PRK07667 uridine kinase; Provi 95.5 0.025 5.4E-07 59.8 6.5 41 192-232 4-44 (193)
286 COG0542 clpA ATP-binding subun 95.5 0.089 1.9E-06 65.5 11.8 156 182-360 170-344 (786)
287 PF00448 SRP54: SRP54-type pro 95.5 0.06 1.3E-06 56.7 9.1 55 206-264 2-56 (196)
288 PRK10733 hflB ATP-dependent me 95.4 0.13 2.8E-06 65.1 13.4 128 206-363 186-336 (644)
289 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.017 3.6E-07 57.9 4.2 122 206-333 3-139 (159)
290 PRK08699 DNA polymerase III su 95.4 0.16 3.6E-06 58.1 12.7 85 295-389 114-202 (325)
291 PRK06067 flagellar accessory p 95.3 0.082 1.8E-06 58.1 10.0 49 192-240 12-60 (234)
292 PRK06762 hypothetical protein; 95.3 0.071 1.5E-06 55.0 8.8 25 205-229 2-26 (166)
293 PF10137 TIR-like: Predicted n 95.3 0.055 1.2E-06 51.7 7.1 60 17-79 2-61 (125)
294 PRK13695 putative NTPase; Prov 95.3 0.027 5.9E-07 58.6 5.6 25 207-231 2-26 (174)
295 cd01121 Sms Sms (bacterial rad 95.3 0.083 1.8E-06 61.5 10.1 49 192-240 69-117 (372)
296 COG0468 RecA RecA/RadA recombi 95.2 0.093 2E-06 57.9 9.8 58 194-256 49-106 (279)
297 KOG0743 AAA+-type ATPase [Post 95.2 0.31 6.7E-06 56.2 13.9 25 206-230 236-260 (457)
298 TIGR02902 spore_lonB ATP-depen 95.2 0.28 6.1E-06 60.5 14.9 46 182-229 65-110 (531)
299 KOG0736 Peroxisome assembly fa 95.2 0.36 7.9E-06 58.8 14.9 50 181-230 671-730 (953)
300 PF14532 Sigma54_activ_2: Sigm 95.2 0.021 4.6E-07 56.7 4.3 45 185-229 1-45 (138)
301 PF07726 AAA_3: ATPase family 95.2 0.012 2.6E-07 55.7 2.3 29 208-236 2-30 (131)
302 KOG2004 Mitochondrial ATP-depe 95.2 0.043 9.3E-07 65.8 7.3 52 182-233 411-466 (906)
303 COG4608 AppF ABC-type oligopep 95.2 0.039 8.5E-07 59.4 6.4 128 204-336 38-174 (268)
304 PRK10416 signal recognition pa 95.1 0.34 7.3E-06 55.3 14.3 29 204-232 113-141 (318)
305 KOG0733 Nuclear AAA ATPase (VC 95.1 0.14 3.1E-06 60.4 11.0 128 205-363 545-693 (802)
306 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.065 1.4E-06 56.4 8.0 23 207-229 1-23 (183)
307 COG0572 Udk Uridine kinase [Nu 95.1 0.04 8.6E-07 57.7 6.1 30 203-232 6-35 (218)
308 COG0464 SpoVK ATPases of the A 95.0 0.63 1.4E-05 57.5 17.6 131 204-364 275-425 (494)
309 PRK15455 PrkA family serine pr 95.0 0.029 6.3E-07 66.9 5.4 49 183-231 77-129 (644)
310 PF13238 AAA_18: AAA domain; P 95.0 0.02 4.2E-07 56.2 3.3 22 208-229 1-22 (129)
311 PTZ00088 adenylate kinase 1; P 95.0 0.066 1.4E-06 57.9 7.6 23 208-230 9-31 (229)
312 PRK12723 flagellar biosynthesi 94.9 0.23 4.9E-06 58.1 12.3 27 204-230 173-199 (388)
313 COG4088 Predicted nucleotide k 94.9 0.067 1.5E-06 54.3 6.8 28 206-233 2-29 (261)
314 KOG1094 Discoidin domain recep 94.9 0.0089 1.9E-07 69.5 0.7 67 1239-1308 563-629 (807)
315 PRK04301 radA DNA repair and r 94.9 0.092 2E-06 60.5 9.0 60 192-256 89-154 (317)
316 COG0488 Uup ATPase components 94.9 0.24 5.1E-06 60.4 12.7 57 286-348 449-511 (530)
317 KOG2123 Uncharacterized conser 94.8 0.0045 9.7E-08 65.2 -1.7 86 812-900 18-105 (388)
318 COG0563 Adk Adenylate kinase a 94.8 0.081 1.8E-06 54.7 7.5 23 207-229 2-24 (178)
319 PF13671 AAA_33: AAA domain; P 94.8 0.067 1.4E-06 53.6 6.8 24 207-230 1-24 (143)
320 TIGR02858 spore_III_AA stage I 94.8 0.13 2.8E-06 57.1 9.5 120 204-334 110-231 (270)
321 PF08423 Rad51: Rad51; InterP 94.8 0.071 1.5E-06 58.9 7.5 64 192-261 25-94 (256)
322 cd01858 NGP_1 NGP-1. Autoanti 94.8 0.21 4.6E-06 50.9 10.5 42 186-227 82-124 (157)
323 PF01583 APS_kinase: Adenylyls 94.8 0.038 8.2E-07 55.1 4.7 35 206-240 3-37 (156)
324 KOG0727 26S proteasome regulat 94.7 0.2 4.4E-06 52.2 9.8 51 183-233 156-217 (408)
325 PF10236 DAP3: Mitochondrial r 94.7 0.8 1.7E-05 52.3 15.8 48 343-390 258-306 (309)
326 KOG0196 Tyrosine kinase, EPH ( 94.7 0.018 4E-07 69.4 2.6 89 1222-1313 636-730 (996)
327 PF08433 KTI12: Chromatin asso 94.6 0.065 1.4E-06 59.4 6.5 26 206-231 2-27 (270)
328 COG2842 Uncharacterized ATPase 94.6 0.49 1.1E-05 51.7 12.8 112 176-306 66-177 (297)
329 KOG0652 26S proteasome regulat 94.5 0.51 1.1E-05 49.6 12.1 51 183-233 172-233 (424)
330 PF00406 ADK: Adenylate kinase 94.5 0.07 1.5E-06 54.0 6.2 20 210-229 1-20 (151)
331 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.22 4.8E-06 54.7 10.5 49 192-240 8-56 (237)
332 COG1066 Sms Predicted ATP-depe 94.5 0.22 4.8E-06 56.5 10.3 100 191-305 79-179 (456)
333 cd01129 PulE-GspE PulE/GspE Th 94.5 0.14 3.1E-06 56.8 9.1 101 190-313 68-168 (264)
334 PF00485 PRK: Phosphoribulokin 94.5 0.033 7.1E-07 59.1 3.7 26 207-232 1-26 (194)
335 PRK12726 flagellar biosynthesi 94.5 0.94 2E-05 52.0 15.3 37 204-240 205-241 (407)
336 cd02019 NK Nucleoside/nucleoti 94.5 0.034 7.3E-07 47.4 3.1 23 207-229 1-23 (69)
337 PRK00625 shikimate kinase; Pro 94.4 0.03 6.5E-07 57.6 3.3 24 207-230 2-25 (173)
338 PRK03839 putative kinase; Prov 94.4 0.031 6.7E-07 58.6 3.5 24 207-230 2-25 (180)
339 KOG1969 DNA replication checkp 94.4 0.093 2E-06 63.3 7.5 74 203-306 324-399 (877)
340 TIGR01420 pilT_fam pilus retra 94.4 0.077 1.7E-06 61.7 6.9 108 205-331 122-229 (343)
341 PRK13531 regulatory ATPase Rav 94.4 0.079 1.7E-06 62.6 6.8 46 182-231 20-65 (498)
342 TIGR03499 FlhF flagellar biosy 94.3 0.19 4E-06 56.7 9.4 29 204-232 193-221 (282)
343 KOG0734 AAA+-type ATPase conta 94.3 0.27 5.9E-06 57.1 10.5 47 183-229 305-361 (752)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 94.2 0.27 5.9E-06 49.0 9.6 48 60-108 3-53 (141)
345 KOG2123 Uncharacterized conser 94.2 0.0065 1.4E-07 64.1 -2.1 98 765-866 19-123 (388)
346 PRK07132 DNA polymerase III su 94.2 1.5 3.3E-05 49.4 16.3 167 191-393 5-185 (299)
347 PRK04040 adenylate kinase; Pro 94.1 0.045 9.7E-07 57.4 3.8 25 206-230 3-27 (188)
348 PF00910 RNA_helicase: RNA hel 94.1 0.035 7.6E-07 52.3 2.7 26 208-233 1-26 (107)
349 PTZ00301 uridine kinase; Provi 94.1 0.048 1E-06 58.0 4.1 29 205-233 3-31 (210)
350 TIGR03574 selen_PSTK L-seryl-t 94.1 0.096 2.1E-06 58.1 6.6 26 207-232 1-26 (249)
351 COG0003 ArsA Predicted ATPase 94.0 0.081 1.8E-06 59.8 5.9 48 205-257 2-49 (322)
352 PRK08233 hypothetical protein; 94.0 0.042 9.1E-07 57.7 3.5 26 205-230 3-28 (182)
353 PRK12727 flagellar biosynthesi 94.0 0.7 1.5E-05 55.4 13.5 47 186-232 327-377 (559)
354 PRK11823 DNA repair protein Ra 94.0 0.25 5.5E-06 59.4 10.2 50 191-240 66-115 (446)
355 PRK05480 uridine/cytidine kina 93.9 0.055 1.2E-06 58.3 4.2 27 203-229 4-30 (209)
356 COG0465 HflB ATP-dependent Zn 93.9 0.26 5.7E-06 59.8 10.1 151 182-362 150-333 (596)
357 COG0541 Ffh Signal recognition 93.9 1.5 3.3E-05 50.6 15.4 48 191-239 79-133 (451)
358 COG1428 Deoxynucleoside kinase 93.9 0.045 9.8E-07 56.4 3.2 26 205-230 4-29 (216)
359 COG1136 SalX ABC-type antimicr 93.9 0.26 5.7E-06 52.3 9.0 64 281-347 147-216 (226)
360 KOG0651 26S proteasome regulat 93.9 0.21 4.5E-06 54.2 8.1 30 204-233 165-194 (388)
361 PF03308 ArgK: ArgK protein; 93.9 0.11 2.5E-06 55.6 6.2 43 190-232 14-56 (266)
362 TIGR00150 HI0065_YjeE ATPase, 93.9 0.084 1.8E-06 51.2 4.8 27 204-230 21-47 (133)
363 TIGR02236 recomb_radA DNA repa 93.9 0.23 5E-06 57.1 9.4 60 192-256 82-147 (310)
364 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.12 2.5E-06 55.9 6.2 51 284-336 147-203 (254)
365 PLN03187 meiotic recombination 93.8 0.19 4.2E-06 57.6 8.4 61 192-257 113-179 (344)
366 cd01122 GP4d_helicase GP4d_hel 93.8 0.38 8.3E-06 54.2 11.0 53 204-263 29-82 (271)
367 TIGR03575 selen_PSTK_euk L-ser 93.7 0.13 2.8E-06 58.7 6.8 23 208-230 2-24 (340)
368 PF00560 LRR_1: Leucine Rich R 93.7 0.023 4.9E-07 35.9 0.4 19 1086-1104 2-20 (22)
369 TIGR01360 aden_kin_iso1 adenyl 93.7 0.056 1.2E-06 57.1 3.7 26 204-229 2-27 (188)
370 KOG0197 Tyrosine kinases [Sign 93.7 0.026 5.5E-07 65.7 1.1 75 1228-1307 219-294 (468)
371 cd03214 ABC_Iron-Siderophores_ 93.7 0.17 3.8E-06 52.8 7.3 124 205-335 25-161 (180)
372 KOG0729 26S proteasome regulat 93.7 0.24 5.2E-06 52.0 7.9 34 203-241 209-242 (435)
373 TIGR03600 phage_DnaB phage rep 93.7 0.58 1.2E-05 56.4 12.7 72 185-264 175-247 (421)
374 PRK09270 nucleoside triphospha 93.6 0.096 2.1E-06 57.2 5.5 30 203-232 31-60 (229)
375 PRK14722 flhF flagellar biosyn 93.6 0.25 5.4E-06 57.2 8.9 29 205-233 137-165 (374)
376 cd02027 APSK Adenosine 5'-phos 93.6 0.24 5.2E-06 49.8 7.9 24 207-230 1-24 (149)
377 cd01125 repA Hexameric Replica 93.6 0.37 8.1E-06 53.0 10.1 24 207-230 3-26 (239)
378 KOG0739 AAA+-type ATPase [Post 93.6 0.58 1.3E-05 50.4 10.7 51 181-231 132-192 (439)
379 cd03223 ABCD_peroxisomal_ALDP 93.6 0.19 4E-06 51.8 7.2 25 205-229 27-51 (166)
380 KOG0195 Integrin-linked kinase 93.6 0.033 7.2E-07 58.4 1.6 58 1259-1316 232-289 (448)
381 TIGR00416 sms DNA repair prote 93.6 0.29 6.3E-06 58.9 9.8 50 191-240 80-129 (454)
382 TIGR00235 udk uridine kinase. 93.6 0.071 1.5E-06 57.2 4.2 28 203-230 4-31 (207)
383 PRK13947 shikimate kinase; Pro 93.6 0.054 1.2E-06 56.2 3.2 25 207-231 3-27 (171)
384 PRK00131 aroK shikimate kinase 93.6 0.06 1.3E-06 56.1 3.6 26 205-230 4-29 (175)
385 COG3640 CooC CO dehydrogenase 93.6 0.12 2.6E-06 54.0 5.5 34 207-240 2-35 (255)
386 cd03247 ABCC_cytochrome_bd The 93.5 0.24 5.2E-06 51.7 8.0 25 205-229 28-52 (178)
387 PRK15453 phosphoribulokinase; 93.5 0.27 5.9E-06 53.9 8.4 29 203-231 3-31 (290)
388 TIGR02524 dot_icm_DotB Dot/Icm 93.5 0.098 2.1E-06 60.7 5.4 108 205-330 134-244 (358)
389 KOG0735 AAA+-type ATPase [Post 93.5 1.8 3.9E-05 52.6 15.5 173 183-389 668-872 (952)
390 PF13306 LRR_5: Leucine rich r 93.4 0.24 5.1E-06 48.4 7.5 104 689-797 8-112 (129)
391 TIGR02238 recomb_DMC1 meiotic 93.4 0.26 5.5E-06 56.1 8.6 61 192-257 83-149 (313)
392 PRK06547 hypothetical protein; 93.3 0.081 1.8E-06 54.5 4.0 27 203-229 13-39 (172)
393 TIGR02655 circ_KaiC circadian 93.3 0.19 4.2E-06 61.4 7.8 50 191-240 249-298 (484)
394 TIGR01351 adk adenylate kinase 93.3 0.26 5.7E-06 53.0 8.0 22 208-229 2-23 (210)
395 PRK00279 adk adenylate kinase; 93.2 0.3 6.4E-06 52.8 8.4 24 207-230 2-25 (215)
396 PRK04328 hypothetical protein; 93.2 0.34 7.4E-06 53.6 8.9 48 193-240 11-58 (249)
397 COG5635 Predicted NTPase (NACH 93.2 0.54 1.2E-05 61.7 12.1 211 206-432 223-466 (824)
398 PRK14528 adenylate kinase; Pro 93.2 0.34 7.3E-06 50.9 8.5 24 206-229 2-25 (186)
399 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.2 0.19 4.2E-06 50.2 6.3 35 205-240 26-60 (144)
400 PRK00889 adenylylsulfate kinas 93.1 0.11 2.4E-06 54.1 4.8 27 205-231 4-30 (175)
401 KOG2035 Replication factor C, 93.1 3.2 7E-05 44.7 15.1 227 183-432 14-282 (351)
402 COG2884 FtsE Predicted ATPase 93.1 0.21 4.6E-06 50.4 6.2 56 281-338 142-203 (223)
403 PRK14526 adenylate kinase; Pro 93.1 0.22 4.8E-06 53.2 7.0 22 208-229 3-24 (211)
404 PHA02244 ATPase-like protein 93.1 0.25 5.5E-06 56.3 7.7 46 181-230 95-144 (383)
405 PRK14529 adenylate kinase; Pro 93.1 0.43 9.3E-06 51.2 9.1 23 208-230 3-25 (223)
406 KOG4308 LRR-containing protein 93.1 0.002 4.4E-08 77.2 -9.5 181 885-1073 89-303 (478)
407 PRK14723 flhF flagellar biosyn 93.1 0.85 1.8E-05 57.5 12.8 26 205-230 185-210 (767)
408 COG3854 SpoIIIAA ncharacterize 93.0 0.37 8E-06 50.0 8.0 107 207-330 139-251 (308)
409 cd03222 ABC_RNaseL_inhibitor T 93.0 0.2 4.2E-06 51.9 6.2 25 205-229 25-49 (177)
410 TIGR00390 hslU ATP-dependent p 93.0 0.13 2.9E-06 59.4 5.4 51 182-232 12-74 (441)
411 cd03228 ABCC_MRP_Like The MRP 93.0 0.15 3.3E-06 52.7 5.6 130 205-346 28-167 (171)
412 cd02028 UMPK_like Uridine mono 93.0 0.1 2.2E-06 54.4 4.2 26 207-232 1-26 (179)
413 cd00984 DnaB_C DnaB helicase C 93.0 0.52 1.1E-05 52.0 10.2 52 204-262 12-64 (242)
414 COG1875 NYN ribonuclease and A 93.0 0.51 1.1E-05 52.6 9.5 33 295-330 352-386 (436)
415 PF00154 RecA: recA bacterial 93.0 0.2 4.3E-06 56.5 6.7 103 191-305 38-142 (322)
416 KOG4308 LRR-containing protein 93.0 0.0015 3.3E-08 78.2 -10.7 135 978-1120 145-303 (478)
417 cd00227 CPT Chloramphenicol (C 92.9 0.086 1.9E-06 54.9 3.5 25 206-230 3-27 (175)
418 PF02374 ArsA_ATPase: Anion-tr 92.9 0.13 2.9E-06 58.3 5.3 34 206-239 2-35 (305)
419 PRK13949 shikimate kinase; Pro 92.9 0.079 1.7E-06 54.6 3.1 24 207-230 3-26 (169)
420 COG1102 Cmk Cytidylate kinase 92.9 0.085 1.8E-06 51.6 3.0 24 207-230 2-25 (179)
421 PHA02988 hypothetical protein; 92.8 0.086 1.9E-06 60.0 3.6 81 1227-1308 32-116 (283)
422 COG3910 Predicted ATPase [Gene 92.7 1.2 2.7E-05 44.9 10.8 24 204-227 36-59 (233)
423 PRK13948 shikimate kinase; Pro 92.7 0.088 1.9E-06 54.7 3.2 27 204-230 9-35 (182)
424 PRK13765 ATP-dependent proteas 92.7 0.12 2.7E-06 64.2 5.0 76 179-264 28-104 (637)
425 COG1703 ArgK Putative periplas 92.7 0.19 4.1E-06 54.6 5.6 42 192-233 38-79 (323)
426 COG0703 AroK Shikimate kinase 92.7 0.089 1.9E-06 53.0 3.0 28 206-233 3-30 (172)
427 PRK03846 adenylylsulfate kinas 92.7 0.15 3.4E-06 54.2 5.1 36 204-239 23-58 (198)
428 PRK05439 pantothenate kinase; 92.6 0.18 3.9E-06 56.7 5.7 29 203-231 84-112 (311)
429 PRK14531 adenylate kinase; Pro 92.6 0.47 1E-05 49.8 8.6 23 207-229 4-26 (183)
430 PF03266 NTPase_1: NTPase; In 92.6 0.1 2.2E-06 53.5 3.5 24 208-231 2-25 (168)
431 PTZ00494 tuzin-like protein; P 92.6 2.6 5.6E-05 48.6 14.4 204 136-360 303-542 (664)
432 PRK08356 hypothetical protein; 92.6 0.2 4.3E-06 53.2 5.8 22 205-226 5-26 (195)
433 PF03205 MobB: Molybdopterin g 92.5 0.16 3.4E-06 50.3 4.6 27 206-232 1-27 (140)
434 PRK06217 hypothetical protein; 92.5 0.09 2E-06 55.2 3.1 24 207-230 3-26 (183)
435 PRK05201 hslU ATP-dependent pr 92.5 0.18 3.8E-06 58.5 5.5 51 182-232 15-77 (443)
436 COG1936 Predicted nucleotide k 92.5 0.098 2.1E-06 52.1 2.9 20 207-226 2-21 (180)
437 PRK10463 hydrogenase nickel in 92.5 0.21 4.5E-06 55.4 5.8 45 192-238 93-137 (290)
438 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.16 3.4E-06 56.5 5.0 37 204-240 35-71 (259)
439 PRK08506 replicative DNA helic 92.4 0.72 1.6E-05 56.1 11.0 72 185-264 173-244 (472)
440 PRK13946 shikimate kinase; Pro 92.4 0.096 2.1E-06 55.0 3.1 26 205-230 10-35 (184)
441 TIGR03596 GTPase_YlqF ribosome 92.4 1.2 2.5E-05 50.2 12.0 23 205-227 118-140 (276)
442 cd02020 CMPK Cytidine monophos 92.4 0.094 2E-06 52.7 3.0 23 207-229 1-23 (147)
443 PTZ00035 Rad51 protein; Provis 92.4 0.64 1.4E-05 53.6 10.0 38 192-229 105-142 (337)
444 COG1419 FlhF Flagellar GTP-bin 92.4 0.67 1.4E-05 53.3 9.8 36 205-240 203-240 (407)
445 cd02024 NRK1 Nicotinamide ribo 92.4 0.095 2.1E-06 54.5 2.9 23 207-229 1-23 (187)
446 COG4618 ArpD ABC-type protease 92.4 0.51 1.1E-05 55.1 8.8 22 206-227 363-384 (580)
447 PF06068 TIP49: TIP49 C-termin 92.3 0.4 8.6E-06 54.2 7.8 58 179-236 21-81 (398)
448 KOG0580 Serine/threonine prote 92.3 0.079 1.7E-06 55.3 2.2 79 1228-1308 35-116 (281)
449 cd00071 GMPK Guanosine monopho 92.3 0.086 1.9E-06 52.1 2.5 26 207-232 1-26 (137)
450 cd00464 SK Shikimate kinase (S 92.3 0.11 2.3E-06 52.8 3.3 22 208-229 2-23 (154)
451 cd02029 PRK_like Phosphoribulo 92.3 0.38 8.1E-06 52.4 7.4 26 207-232 1-26 (277)
452 cd03246 ABCC_Protease_Secretio 92.3 0.21 4.6E-06 51.8 5.5 34 205-239 28-61 (173)
453 cd03216 ABC_Carb_Monos_I This 92.3 0.17 3.7E-06 51.8 4.7 113 205-334 26-144 (163)
454 cd02021 GntK Gluconate kinase 92.3 0.096 2.1E-06 52.9 2.8 23 207-229 1-23 (150)
455 TIGR02788 VirB11 P-type DNA tr 92.3 0.17 3.8E-06 57.8 5.2 109 205-332 144-253 (308)
456 PRK14721 flhF flagellar biosyn 92.2 1 2.2E-05 53.1 11.5 26 204-229 190-215 (420)
457 KOG1970 Checkpoint RAD17-RFC c 92.2 0.49 1.1E-05 55.6 8.6 42 189-230 89-135 (634)
458 PRK09302 circadian clock prote 92.2 0.42 9E-06 59.2 8.8 144 178-329 4-174 (509)
459 PRK09280 F0F1 ATP synthase sub 92.2 0.33 7.1E-06 57.5 7.3 99 205-306 144-250 (463)
460 PF13245 AAA_19: Part of AAA d 92.1 0.28 6.1E-06 42.6 5.1 24 205-228 10-33 (76)
461 PLN03186 DNA repair protein RA 92.1 0.51 1.1E-05 54.2 8.7 65 192-262 110-180 (342)
462 cd02025 PanK Pantothenate kina 92.1 0.11 2.3E-06 56.2 3.0 25 207-231 1-25 (220)
463 TIGR02239 recomb_RAD51 DNA rep 92.1 0.51 1.1E-05 53.9 8.7 37 192-228 83-119 (316)
464 CHL00206 ycf2 Ycf2; Provisiona 92.1 0.96 2.1E-05 61.4 12.0 26 204-229 1629-1654(2281)
465 TIGR00708 cobA cob(I)alamin ad 92.1 0.66 1.4E-05 47.2 8.4 122 206-332 6-140 (173)
466 PF07714 Pkinase_Tyr: Protein 92.1 0.078 1.7E-06 59.4 2.1 80 1226-1308 10-95 (259)
467 TIGR02322 phosphon_PhnN phosph 92.1 0.12 2.6E-06 54.1 3.3 25 206-230 2-26 (179)
468 cd03240 ABC_Rad50 The catalyti 92.1 0.38 8.3E-06 51.3 7.2 20 207-226 24-43 (204)
469 COG0467 RAD55 RecA-superfamily 92.1 0.23 5E-06 55.5 5.8 44 197-240 15-58 (260)
470 COG2019 AdkA Archaeal adenylat 92.0 0.15 3.3E-06 50.1 3.6 25 205-229 4-28 (189)
471 KOG0927 Predicted transporter 92.0 5 0.00011 47.6 16.1 35 194-228 405-439 (614)
472 PF13306 LRR_5: Leucine rich r 92.0 0.37 8E-06 47.1 6.6 8 1055-1062 121-128 (129)
473 PRK12339 2-phosphoglycerate ki 91.9 0.15 3.2E-06 53.8 3.8 25 205-229 3-27 (197)
474 PRK10751 molybdopterin-guanine 91.9 0.17 3.7E-06 51.6 4.1 28 204-231 5-32 (173)
475 PRK14530 adenylate kinase; Pro 91.9 0.13 2.8E-06 55.6 3.4 23 207-229 5-27 (215)
476 KOG1532 GTPase XAB1, interacts 91.9 0.18 3.9E-06 53.5 4.2 38 204-242 18-55 (366)
477 cd02023 UMPK Uridine monophosp 91.9 0.11 2.3E-06 55.4 2.8 23 207-229 1-23 (198)
478 PRK05057 aroK shikimate kinase 91.9 0.13 2.8E-06 53.2 3.3 25 206-230 5-29 (172)
479 PF00437 T2SE: Type II/IV secr 91.9 0.098 2.1E-06 58.9 2.6 119 189-331 111-231 (270)
480 COG4133 CcmA ABC-type transpor 91.8 0.9 1.9E-05 46.1 8.8 47 285-333 139-191 (209)
481 KOG3347 Predicted nucleotide k 91.8 0.13 2.9E-06 49.4 2.9 24 206-229 8-31 (176)
482 PRK09519 recA DNA recombinatio 91.8 0.39 8.5E-06 60.6 7.8 49 192-240 46-95 (790)
483 PF03969 AFG1_ATPase: AFG1-lik 91.8 1.1 2.3E-05 52.2 10.9 102 204-332 61-167 (362)
484 COG0305 DnaB Replicative DNA h 91.8 1.5 3.3E-05 51.4 12.1 113 184-307 176-290 (435)
485 PF03796 DnaB_C: DnaB-like hel 91.8 0.31 6.7E-06 54.4 6.4 54 205-265 19-73 (259)
486 PLN02459 probable adenylate ki 91.8 0.36 7.8E-06 52.7 6.6 24 207-230 31-54 (261)
487 PRK05537 bifunctional sulfate 91.7 0.26 5.6E-06 61.0 6.2 50 182-231 369-418 (568)
488 COG1224 TIP49 DNA helicase TIP 91.7 0.34 7.4E-06 53.7 6.2 56 179-234 36-94 (450)
489 PRK13975 thymidylate kinase; P 91.7 0.15 3.2E-06 54.3 3.6 26 206-231 3-28 (196)
490 PF00006 ATP-synt_ab: ATP synt 91.7 0.074 1.6E-06 56.6 1.3 26 206-231 16-41 (215)
491 cd01130 VirB11-like_ATPase Typ 91.7 0.16 3.5E-06 53.3 3.9 94 205-312 25-118 (186)
492 PRK15429 formate hydrogenlyase 91.7 0.4 8.7E-06 61.7 8.1 48 182-229 376-423 (686)
493 KOG1095 Protein tyrosine kinas 91.6 0.13 2.9E-06 65.9 3.6 79 1227-1308 704-789 (1025)
494 PRK09435 membrane ATPase/prote 91.6 0.37 8E-06 55.0 6.7 41 192-232 43-83 (332)
495 PLN02796 D-glycerate 3-kinase 91.6 3.1 6.8E-05 47.4 13.8 28 204-231 99-126 (347)
496 PRK14738 gmk guanylate kinase; 91.5 0.17 3.7E-06 54.1 3.8 29 200-228 8-36 (206)
497 KOG0066 eIF2-interacting prote 91.5 1.4 3.1E-05 49.8 10.8 31 197-227 605-635 (807)
498 PRK05973 replicative DNA helic 91.5 0.28 6.1E-06 53.0 5.4 37 204-240 63-99 (237)
499 PRK08006 replicative DNA helic 91.4 1 2.2E-05 54.6 10.6 54 204-264 223-277 (471)
500 COG0714 MoxR-like ATPases [Gen 91.4 0.24 5.2E-06 57.5 5.2 51 182-236 24-74 (329)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-123 Score=1231.96 Aligned_cols=730 Identities=35% Similarity=0.619 Sum_probs=648.3
Q ss_pred CCCCCCCCCCCCCcccEEEccccccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCc
Q 000630 1 MANDATTPASFRLRWDVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNY 80 (1382)
Q Consensus 1 m~~~~~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y 80 (1382)
||+|||| +..|+||||+||||+|+|++|++||+.+|.++||++|+|+ ++++|+.+.+++.+||++|+++|||+|++|
T Consensus 1 ~~~~~~~--~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSS--SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCC--CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 5655443 3579999999999999999999999999999999999985 799999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHcC----CeEEEEEecCCCccccccccchHHHHHHHhhhcCchhHHHHHHHHHHHhcccccccCC-
Q 000630 81 GSSRWCLEELAKICELN----RLILPVFYKVDPSDVRRQQGPFKQDFERHQDRFGEDTVSQWRKAMMKVGGISGWVFNN- 155 (1382)
Q Consensus 81 ~~s~w~~~e~~~~~~~~----~~~ipv~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~- 155 (1382)
++|.||++||++|++|+ +.|+||||+|+|+|||+|+|.||++|++++++.+++++++||+||++||+++||++..
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCC
Confidence 99999999999999987 7899999999999999999999999999999888899999999999999999999976
Q ss_pred chHHHHHHHHHHHHHHhhcCCCccccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc
Q 000630 156 SEEEQLVQLLVKRVLAELSNTPMKVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH 235 (1382)
Q Consensus 156 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 235 (1382)
..|+++|++||++|.+++..++....+.+|||+.+++++..+|..+.+++++|+||||||+||||||+++|+++..+|+.
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 45999999999999999998888888999999999999999998777889999999999999999999999999999999
Q ss_pred ceeeeeccccccC----------CCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCC
Q 000630 236 RSFISNVRETSGQ----------NDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDD 305 (1382)
Q Consensus 236 ~~~~~~~~~~~~~----------~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~ 305 (1382)
.+|+..++..... ......++++++.++....+. .. .....++++++++|+||||||||+
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~------~~----~~~~~~~~~L~~krvLLVLDdv~~ 307 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI------KI----YHLGAMEERLKHRKVLIFIDDLDD 307 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc------cc----CCHHHHHHHHhCCeEEEEEeCCCC
Confidence 9998643211100 112345666777776543211 11 113567888999999999999999
Q ss_pred hHHHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 000630 306 PSQLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGG 385 (1382)
Q Consensus 306 ~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 385 (1382)
..+++.+.+...|+++|++||||||++.++..+++.++|+|+.|+++||++||+++||+...+++++.+++++|+++|+|
T Consensus 308 ~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 308 QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 99999999888899999999999999999877777889999999999999999999999877778899999999999999
Q ss_pred ChHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCchHHHHHHhhccCCCc-cccceeeeeecccccCCCCHHHHHHHHhhC
Q 000630 386 LPLALEVFGAFLFDKRRITEWEDALEKLRKIRPNNLQEVLKISFDGLDQ-QDKCIFLDIACLFVKMGMNKEDAIDILKGC 464 (1382)
Q Consensus 386 ~PLal~~~g~~L~~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~ 464 (1382)
+|||++++|++|+++ +..+|+.++++++...+..|.++|++||+.|++ .+|.||+++|||| .+.+.+.+..++..+
T Consensus 388 LPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff--~~~~~~~v~~~l~~~ 464 (1153)
T PLN03210 388 LPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLF--NGEKVNDIKLLLANS 464 (1153)
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhc--CCCCHHHHHHHHHhc
Confidence 999999999999986 489999999999988888999999999999986 5899999999999 667788888888888
Q ss_pred CCChhhhHHHHhcccceEEecCCeEEccHHHHHHHHHHHhhcCCCCCCCcccccchhhHHHHhccccCcccEEEEEeccc
Q 000630 465 GFRAEIAIVVLMKKSLIKITEDDTLWMHDQLRDMGRQIVQQESLLDPGNRSRLWDRDEIMTMLKLRKGTRSIQGIVLDFK 544 (1382)
Q Consensus 465 g~~~~~~l~~L~~~sLi~~~~~~~~~mHdll~~~~~~~~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~~~~~ 544 (1382)
++.++.+++.|+++|||++ ..++++|||++|+||++++++++ .+|++++|+|+++|++.++..++|++.++||.+|+.
T Consensus 465 ~~~~~~~l~~L~~ksLi~~-~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 465 DLDVNIGLKNLVDKSLIHV-REDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred CCCchhChHHHHhcCCEEE-cCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 9888899999999999996 45789999999999999999987 689999999999999999999999999999999874
Q ss_pred chhhhccccccccccccccccchhhHHhhhhhhhhcccccccccceeeeCccccCCCCCCcEEEeeCcc----------C
Q 000630 545 KEMVKESSAETSSRDNLQRSDLTSAITYLKGRYKKCLQHRTRSEREMILHTKPFESMVSLRLLQINYTK----------L 614 (1382)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~l~~~~----------l 614 (1382)
+ ..++.++..+|.+|.+|++|+++.+. +
T Consensus 543 ~------------------------------------------~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l 580 (1153)
T PLN03210 543 E------------------------------------------IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL 580 (1153)
T ss_pred c------------------------------------------cceeeecHHHHhcCccccEEEEecccccccccceeec
Confidence 3 23456778899999999999997652 5
Q ss_pred CCCcccccCcceEEEecCCCCCCCCCCCCcccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCCc
Q 000630 615 EGSFKFLPHELKWLQWKDCKMKTLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQK 694 (1382)
Q Consensus 615 ~~~~~~lp~~L~~L~~~~~~l~~lp~~~~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~ 694 (1382)
++++..+|++|++|+|.+++++.+|..|.+.+|+.|+|++|.+..+|. +...+++|+.|+|++|..++.+|+++.+++
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~ 658 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWD--GVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccc--ccccCCCCCEEECCCCCCcCcCCccccCCc
Confidence 567888999999999999999999999999999999999999999987 678899999999999999999999999999
Q ss_pred ccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecC
Q 000630 695 LEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDG 774 (1382)
Q Consensus 695 L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~ 774 (1382)
|++|+|++|.....+|..++++++|+.|++++|..++.+|..+ ++++|++|+|++|..++.+|.. ..+|+.|++++
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~ 734 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE 734 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCC
Confidence 9999999999999999999999999999999999999999876 7999999999999887777754 35778888888
Q ss_pred ccccccCccccCCCCCcEEEcCC
Q 000630 775 TAIEKLPQSIFHLVKLEKLNLGK 797 (1382)
Q Consensus 775 ~~i~~lp~~l~~l~~L~~L~l~~ 797 (1382)
|.+..+|..+ .+++|+.|.+.+
T Consensus 735 n~i~~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 735 TAIEEFPSNL-RLENLDELILCE 756 (1153)
T ss_pred Cccccccccc-cccccccccccc
Confidence 8877777544 345555555543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-58 Score=576.75 Aligned_cols=603 Identities=24% Similarity=0.335 Sum_probs=433.0
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHH---HhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNK---LVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
||.+..++++.+.|..+. ..+|+|+||||+||||||++++|+ +..+|+.++|+. +++.+....++.+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-----VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-----VSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-----EcccccHHhHHHHHHH
Confidence 999999999999998654 389999999999999999999994 678999999998 8999999999999999
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCcccc-CCC
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGALPE-HYV 340 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~-~~~ 340 (1382)
.+..... ........+....+.+.|+++|+||||||||+..+|+.+..+++....||+|++|||++.|+.. +++
T Consensus 234 ~l~~~~~-----~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 234 RLGLLDE-----EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HhccCCc-----ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 8875321 1122223677888999999999999999999999999999998887789999999999999988 778
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHhhhCCCCCHHHHHHHHHHHHhc---
Q 000630 341 NQLYEVQKLDSSRALQLFSYHALGRE-NPTDKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRITEWEDALEKLRKI--- 416 (1382)
Q Consensus 341 ~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~~~~~~w~~~l~~l~~~--- 416 (1382)
...++++.|+++|||.||++.||... ...+...++|++++++|+|+|||+.++|..|+.+.+..+|+.+.+.+...
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~ 388 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAA 388 (889)
T ss_pred CccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccC
Confidence 88999999999999999999998763 33355789999999999999999999999999999999999999988654
Q ss_pred --C--CchHHHHHHhhccCCCccccceeeeeecccccCCCCHHHHHHHHhhCCCC------------hhhhHHHHhcccc
Q 000630 417 --R--PNNLQEVLKISFDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGCGFR------------AEIAIVVLMKKSL 480 (1382)
Q Consensus 417 --~--~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~g~~------------~~~~l~~L~~~sL 480 (1382)
+ .+.+..+++.|||.|+++.|.||+|||.||+|+.|+++.++.+|+++||+ +..++..|++++|
T Consensus 389 ~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~L 468 (889)
T KOG4658|consen 389 DFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASL 468 (889)
T ss_pred CCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHH
Confidence 1 34688999999999999999999999999999999999999999999965 5678999999999
Q ss_pred eEEecC----CeEEccHHHHHHHHHHHhhcCCCCCCCcccccchhhHHHHhccccCcccEEEEEecccchhhhccccccc
Q 000630 481 IKITED----DTLWMHDQLRDMGRQIVQQESLLDPGNRSRLWDRDEIMTMLKLRKGTRSIQGIVLDFKKEMVKESSAETS 556 (1382)
Q Consensus 481 i~~~~~----~~~~mHdll~~~~~~~~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v~~i~~~~~~~~~~~~~~~~~ 556 (1382)
+....+ .++.|||++|+||.+++++....... .+.....+... .
T Consensus 469 l~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~------------~iv~~~~~~~~-------~------------- 516 (889)
T KOG4658|consen 469 LIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN------------QIVSDGVGLSE-------I------------- 516 (889)
T ss_pred HhhcccccceeEEEeeHHHHHHHHHHhccccccccc------------eEEECCcCccc-------c-------------
Confidence 985542 57999999999999999854321000 00000000000 0
Q ss_pred cccccccccchhhHHhhhhhhhhcccccccccceeeeCccccCCCCCCcEEEeeCccCCCCcccccCcceEEEecCCCCC
Q 000630 557 SRDNLQRSDLTSAITYLKGRYKKCLQHRTRSEREMILHTKPFESMVSLRLLQINYTKLEGSFKFLPHELKWLQWKDCKMK 636 (1382)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~l~~Lr~L~l~~~~l~~~~~~lp~~L~~L~~~~~~l~ 636 (1382)
..... +...|.+.+.++...
T Consensus 517 ---------------------------------------~~~~~---------------------~~~~rr~s~~~~~~~ 536 (889)
T KOG4658|consen 517 ---------------------------------------PQVKS---------------------WNSVRRMSLMNNKIE 536 (889)
T ss_pred ---------------------------------------ccccc---------------------hhheeEEEEeccchh
Confidence 00000 112233333333333
Q ss_pred CCCCCCCcccceeEecCCCCccccccccCccccccccEEecCCCcC-CCcCCC--CCCCCcccEEeccCccccccccccc
Q 000630 637 TLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWN-LASIPD--LSEHQKLEKLVLERCCRLTKIHESV 713 (1382)
Q Consensus 637 ~lp~~~~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~i 713 (1382)
.++..... ++|++|-+.+|.. +..++. |..++.|++|||++|...+.+|.+|
T Consensus 537 ~~~~~~~~-------------------------~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 537 HIAGSSEN-------------------------PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred hccCCCCC-------------------------CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 34433332 3455555555532 333333 6667777777777777777888888
Q ss_pred cCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccc---cCccccCCCCC
Q 000630 714 GNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEK---LPQSIFHLVKL 790 (1382)
Q Consensus 714 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~---lp~~l~~l~~L 790 (1382)
+.|-+||+|+|+++ .+..+|..+.+|..|.+|++..+.....+|.....|++|++|.+....... .-..+.++.+|
T Consensus 592 ~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 88888888888874 455788888888888888888776666666667778888888877655221 11233455555
Q ss_pred cEEEcCCCCCCCCCChhhhhhccccc----ccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCc------cc
Q 000630 791 EKLNLGKCKSLKQLPNCIGTQLIALK----ELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGH------LK 860 (1382)
Q Consensus 791 ~~L~l~~~~~~~~l~~~~~~~l~~L~----~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~------l~ 860 (1382)
+.+....... .+-..+.. +..|. .+.+..+.....+..+..+.+|+.|.+.+|............ ++
T Consensus 671 ~~ls~~~~s~--~~~e~l~~-~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 671 ENLSITISSV--LLLEDLLG-MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred hhheeecchh--HhHhhhhh-hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 5555544332 01011111 22222 333333444566677788899999999998876543322111 23
Q ss_pred cceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCc
Q 000630 861 SLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR 920 (1382)
Q Consensus 861 ~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 920 (1382)
++..+.+.++.....+.+....++|+.|++..|.....+.+....+..+..+.+..+.+.
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 444444444444455555566778888888877777766665555555555444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-53 Score=564.69 Aligned_cols=659 Identities=20% Similarity=0.289 Sum_probs=342.4
Q ss_pred CCCcEEEeeCccCCCCcc----cccCcceEEEecCCCCC-CCCCCC--CcccceeEecCCCCccccccccCccccccccE
Q 000630 602 VSLRLLQINYTKLEGSFK----FLPHELKWLQWKDCKMK-TLPSDF--RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMV 674 (1382)
Q Consensus 602 ~~Lr~L~l~~~~l~~~~~----~lp~~L~~L~~~~~~l~-~lp~~~--~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~ 674 (1382)
.+++.|+++++.+.+... .+ +.|+.|++++|.+. .+|..+ .+.+|++|+|++|.+....+ ...+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence 467788888877655321 11 24555555555554 344432 44555555555555543211 123455555
Q ss_pred EecCCCcCCCcCCC-CCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCC
Q 000630 675 LNLRGCWNLASIPD-LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSK 753 (1382)
Q Consensus 675 L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 753 (1382)
|+|++|.+...+|. +..+++|++|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+.++++|++|+|++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 55555555544443 55555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCcccccccCCccEEEecCcccc-ccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCc-cCChh
Q 000630 754 LKELPEDICSMRSLKELLVDGTAIE-KLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVE-ELPDS 831 (1382)
Q Consensus 754 ~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~-~l~~~ 831 (1382)
.+.+|..++++++|++|++++|.+. .+|..+.++++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+. .+|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChh
Confidence 5555555555555555555555554 44555555555555555555555555555544 555555555555554 44555
Q ss_pred ccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCc-ccCcccCCCcccccccccCccCCCCCcccccCCCCCc
Q 000630 832 VGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVK-NLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLV 910 (1382)
Q Consensus 832 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 910 (1382)
+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 555555555555555555555555555555555555555553 4455555555555555555555555555555555555
Q ss_pred EEecCCCcCc-cCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcc-cCccccCCCCCceecccccc
Q 000630 911 ELQLDGTSIR-HLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITR-MPESIGILENLVILRLNECK 988 (1382)
Q Consensus 911 ~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~n~ 988 (1382)
.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 5555555554 445555555555555555555555555555555555555555555543 33344455555555555555
Q ss_pred ccccccccccCCcccceeeccCccCc-cCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecc
Q 000630 989 QLEKLPASMGKLKSLVHLLMEETAVT-ELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDA 1067 (1382)
Q Consensus 989 ~~~~~p~~l~~l~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~L 1067 (1382)
+.+.+|..+ ..++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+.++++|+.|+|
T Consensus 464 ~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 464 FFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS------------GEIPDELSSCKKLVSLDL 530 (968)
T ss_pred eeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce------------eeCChHHcCccCCCEEEC
Confidence 555555433 2355555555555554 44445555555555555555332 224455555555555555
Q ss_pred cCcccCCCCCCccCCCCCCCEeeccCCCCC-cCchhccCCcccceeecccccCCCCCCCCCCCCcEEEcCCccccccccC
Q 000630 1068 QGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFALESICD 1146 (1382)
Q Consensus 1068 s~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~ 1146 (1382)
++|.+++.+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++.+.+|.
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~--------------------- 589 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS--------------------- 589 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC---------------------
Confidence 555555555555555555555555555555 4555555555555555555555555553
Q ss_pred CCCCCCCCEEeccCCCCCCCCC---cccCcccc----c-eeeccCC---CCCch-----hh-hccccccccCCceE----
Q 000630 1147 LSNLKSLKRLNLTNCEKLVDIS---GLESLKSL----K-WLYMSGC---NACSA-----AV-KRRLSKVHFKNLRS---- 1205 (1382)
Q Consensus 1147 l~~l~~L~~L~ls~~~~~~~~~---~~~~l~~L----~-~L~l~~~---~~~~~-----~~-~~~l~~~~~~~l~~---- 1205 (1382)
.+.+..+....+.+|+.+...+ +...+..- . .+.+..- -.+.. .+ .++-.....+..+.
T Consensus 590 ~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (968)
T PLN00113 590 TGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGT 669 (968)
T ss_pred cchhcccChhhhcCCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 1111222222222332211100 00001000 0 0000000 00000 00 00000000000000
Q ss_pred --EEcCCCCCCC---------cccCCceeEeccCCceeeeeE--EEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcc
Q 000630 1206 --LSMPGTEIPD---------WFSPDMVRFTERRNHKIEGVI--IGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTL 1272 (1382)
Q Consensus 1206 --l~l~~~~ip~---------~f~~~~~~~~~~~~~~~~g~~--~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~ 1272 (1382)
.......... .+....+......+.+|+|.. .+..||+|...... . ....|+..+.+.+
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~------~~~~~~~~l~~l~ 741 (968)
T PLN00113 670 WELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN--S------IPSSEIADMGKLQ 741 (968)
T ss_pred ccccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc--c------ccHHHHHHHhhCC
Confidence 0000000000 011111222334567888875 57789999774311 1 1123456667889
Q ss_pred cccccccCCCcCCCCCeeEEeecCCCcchhhcccC
Q 000630 1273 LNTALDLQGVPETDECQVYLCRFPGFRPLVSMLKD 1307 (1382)
Q Consensus 1273 h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~L~~ 1307 (1382)
|+|+|++.|+|.......+|||||++|+|.++++.
T Consensus 742 HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~ 776 (968)
T PLN00113 742 HPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN 776 (968)
T ss_pred CCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc
Confidence 99999999999999999999999999999887753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-47 Score=510.07 Aligned_cols=524 Identities=22% Similarity=0.304 Sum_probs=308.1
Q ss_pred cceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCC--CCCCCcccEEeccCccccccccccccCCCCCceEe
Q 000630 646 QLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPD--LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLN 723 (1382)
Q Consensus 646 ~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 723 (1382)
+++.|+|++|.+..... ..+..+++|++|+|++|.+...+|. +..+++|++|+|++|.+.+.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 45566666555554332 2344556666666666655545553 33556666666666655555443 3456666666
Q ss_pred ccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCcccc-ccCccccCCCCCcEEEcCCCCCCC
Q 000630 724 LRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIE-KLPQSIFHLVKLEKLNLGKCKSLK 802 (1382)
Q Consensus 724 L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~~~~~~ 802 (1382)
|++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+. .+|..+.++++|+.|++++|.+.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 6666555555655666666666666666555556666666666666666666554 455555666666666666666555
Q ss_pred CCChhhhhhcccccccccccccCc-cCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCc-ccCcccC
Q 000630 803 QLPNCIGTQLIALKELSFNYSAVE-ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVK-NLPASIG 880 (1382)
Q Consensus 803 ~l~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~lp~~l~ 880 (1382)
.+|..+.. +++|+.|++++|.+. .+|..++++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+.
T Consensus 227 ~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 227 EIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred cCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 55555554 566666666666554 45555666666666666666666666666666666666666666553 4555555
Q ss_pred CCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCc-cCccccCCccccceeeccCCccCCcccccccCCCCCCEE
Q 000630 881 SLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR-HLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTL 959 (1382)
Q Consensus 881 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 959 (1382)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 6666666666666666666666666666666666666655 455556666666666666666666666666666666666
Q ss_pred EcccccCc-ccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCc-cCCcccCCCCCCcEEEccCCCCc
Q 000630 960 NIVNASIT-RMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVT-ELPESFGMLSSLMVLKMKKPSVK 1037 (1382)
Q Consensus 960 ~L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~~~ 1037 (1382)
++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 66666655 34555566666666666666666666666666666666666666665 34444555666666666666432
Q ss_pred ccCcchhhccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCC-cCchhccCCcccceeeccc
Q 000630 1038 ARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSLRGLSHLKNLLLPY 1116 (1382)
Q Consensus 1038 ~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~Ls~ 1116 (1382)
+ .+|..+ ..++|+.|++++|++++.+|..+..+++|+.|+|++|++. .+|..+.++++|++|+|++
T Consensus 466 ~------------~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 466 G------------GLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred e------------ecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 2 233322 2355666666666666666666666666666666666665 5566666666666666666
Q ss_pred ccCCCCCCCC---CCCCcEEEcCCcccccc-ccCCCCCCCCCEEeccCCCCCCCCCcccCccccceeeccCCCC
Q 000630 1117 CQELKSLPPL---PSSLEEVNVANCFALES-ICDLSNLKSLKRLNLTNCEKLVDISGLESLKSLKWLYMSGCNA 1186 (1382)
Q Consensus 1117 n~~l~~lp~~---~~~L~~L~l~~c~~l~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~L~~L~l~~~~~ 1186 (1382)
|.+.+.+|.. .++|+.|++++|..... +..+..+++|+.|++++|++.+.+|....+..+....+.+|+.
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 6666555541 23444444444433221 2245667777777777777777777544444444445555543
No 5
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=318.86 Aligned_cols=154 Identities=29% Similarity=0.495 Sum_probs=142.9
Q ss_pred CCCCcccEEEccccccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCcccChhhHHH
Q 000630 10 SFRLRWDVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNYGSSRWCLEE 89 (1382)
Q Consensus 10 ~~~~~~dvfis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~w~~~e 89 (1382)
+...+|||||||||+|+|++||+||+++|+++||+||+|++++.+|+.+.+.|.+||++|+++|||+|++|++|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEEecCCCcccccc-ccchHHHHHHHhhhcCchhHHHHHHHHHHHhcccccccC--CchHHHHHHHHH
Q 000630 90 LAKICELNRLILPVFYKVDPSDVRRQ-QGPFKQDFERHQDRFGEDTVSQWRKAMMKVGGISGWVFN--NSEEEQLVQLLV 166 (1382)
Q Consensus 90 ~~~~~~~~~~~ipv~~~v~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~--~~~e~~~i~~i~ 166 (1382)
|++|+++++.||||||+|+|+|||+| .|. ...+++++||+||++||++.|+++. .+.|+++|++||
T Consensus 102 L~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv 170 (187)
T PLN03194 102 LALIMESKKRVIPIFCDVKPSQLRVVDNGT-----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMAS 170 (187)
T ss_pred HHHHHHcCCEEEEEEecCCHHHhhccccCC-----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999997 433 2368999999999999999999776 456999999999
Q ss_pred HHHHHhhc
Q 000630 167 KRVLAELS 174 (1382)
Q Consensus 167 ~~v~~~l~ 174 (1382)
+.|.+++-
T Consensus 171 ~~v~k~l~ 178 (187)
T PLN03194 171 DAVIKNLI 178 (187)
T ss_pred HHHHHHHH
Confidence 99988764
No 6
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.9e-37 Score=350.37 Aligned_cols=274 Identities=28% Similarity=0.459 Sum_probs=217.4
Q ss_pred hhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHH--HhcccccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 187 LDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNK--LVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 187 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+. .+.......++.+++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-----~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-----LSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-----EES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-----ccccccccccccccccccc
Confidence 789999999999876678999999999999999999999997 889999999987 4555566888888988887
Q ss_pred CCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCccccCCC-ccE
Q 000630 265 SGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGALPEHYV-NQL 343 (1382)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~-~~~ 343 (1382)
..... .....+..+....+++.+.++++||||||||+...|+.+...++....|++||||||+..++..... ...
T Consensus 76 ~~~~~----~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 76 EPDSS----ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp CC-ST----SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEE
T ss_pred ccccc----cccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 53210 1133456678899999999999999999999999998888777666789999999999988765433 679
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCChHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC-----
Q 000630 344 YEVQKLDSSRALQLFSYHALGRE-NPTDKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRITEWEDALEKLRKIR----- 417 (1382)
Q Consensus 344 ~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~~~~~~w~~~l~~l~~~~----- 417 (1382)
|++++|+.+||++||...++... ...+...+.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+....
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999997655 223444578999999999999999999999966556788999998876543
Q ss_pred -CchHHHHHHhhccCCCccccceeeeeecccccCCCCHHHHHHHHhhCCCChh
Q 000630 418 -PNNLQEVLKISFDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGCGFRAE 469 (1382)
Q Consensus 418 -~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~g~~~~ 469 (1382)
...+..++..||+.|+++.|+||+++|+||.+..++.+.++.+|.++|++..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 3579999999999999999999999999999999999999999999987643
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-37 Score=326.49 Aligned_cols=450 Identities=25% Similarity=0.361 Sum_probs=279.1
Q ss_pred cceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCCcccEEeccCccccccccccccCCCCCceEecc
Q 000630 646 QLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLR 725 (1382)
Q Consensus 646 ~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~ 725 (1382)
.|..|.+++|.+..+.+ ..+.+..|.+|++++|......|.+..+..+..|+.++|. ...+|..++.+.+|+.|+.+
T Consensus 46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccH--hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhcc
Confidence 35566666666665543 5555566666666666555555555555555555555553 23445555555555555555
Q ss_pred CCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCC
Q 000630 726 DCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLP 805 (1382)
Q Consensus 726 ~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~ 805 (1382)
+|. ..++|++++.+-.|+.|+..+|+ ...+|.++.++.+|..|++.+|.++.+|+..-+++.|++|+...|- ++.+|
T Consensus 123 ~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP 199 (565)
T KOG0472|consen 123 SNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLP 199 (565)
T ss_pred ccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCC
Confidence 543 33444555555555555555433 3344555555555555555555555555554445555555555443 45555
Q ss_pred hhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCC-cCccccceeeeccCCCCcccCcccCCCcc
Q 000630 806 NCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDS-IGHLKSLIEFLIDGTAVKNLPASIGSLSY 884 (1382)
Q Consensus 806 ~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~lp~~l~~l~~ 884 (1382)
+.++. +.+|..|++..|.+..+| .|..|..|..|+++.|.+. .+|.. ..+++++..|++..|+++++|..+.-+.+
T Consensus 200 ~~lg~-l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGG-LESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS 276 (565)
T ss_pred hhhcc-hhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhh
Confidence 55554 555555555555555555 4555555555555444432 22322 23555555555555555555555555555
Q ss_pred cccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCC------------------------------------
Q 000630 885 LKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGG------------------------------------ 928 (1382)
Q Consensus 885 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~------------------------------------ 928 (1382)
|+.|++++|.+++ +|.+++++ .|+.|-+.||.+.++...+-+
T Consensus 277 L~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 5555555555433 34445555 555555555554433211100
Q ss_pred ------ccccceeeccCCccCCcccccccC---CCCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccC
Q 000630 929 ------LKMLDKLVMRNCLSLKTLPDSIGS---ILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGK 999 (1382)
Q Consensus 929 ------l~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~ 999 (1382)
.-+.+.|+++.-+.+ .+|..... -.-....+++.|++.++|..+..+..+++.-+..|+..+.+|..++.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 001111111111111 11111111 11144566666777777777767777777777777778888999999
Q ss_pred CcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCCCCCc
Q 000630 1000 LKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDD 1079 (1382)
Q Consensus 1000 l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 1079 (1382)
+++|..|++++|.+.++|..++.+..|+.|+++.|.+ ..+|..+..+..|+.+-.++|++....|+.
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-------------r~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-------------RMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred hhcceeeecccchhhhcchhhhhhhhhheeccccccc-------------ccchHHHhhHHHHHHHHhccccccccChHH
Confidence 9999999999999999999999999999999999954 447777777788888889999998777777
Q ss_pred cCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCC
Q 000630 1080 FEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQEL 1120 (1382)
Q Consensus 1080 l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l 1120 (1382)
+.++.+|..|||.+|.+..+|..++++++|++|+|++|++.
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999999999999999999999999999999975
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=4.4e-35 Score=310.61 Aligned_cols=471 Identities=26% Similarity=0.352 Sum_probs=333.2
Q ss_pred CcccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEe
Q 000630 693 QKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLV 772 (1382)
Q Consensus 693 ~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L 772 (1382)
..|+.|.+++|.... +...+.++..|.+|++++|. ...+|++++.+..++.|+.++| ....+|+.++.+.+|.+|++
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhc
Confidence 457778888876544 33457788888888888864 5567777888888888888885 45677888888888888888
Q ss_pred cCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcC
Q 000630 773 DGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTI 852 (1382)
Q Consensus 773 ~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~ 852 (1382)
+.|.+.++|++++.+..|+.|+..+|+ ...+|..++. +.+|..+++.+|.+..+|...-+++.|++|+...| ..+.+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tl 198 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVN-LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETL 198 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchHHHH-HHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcC
Confidence 888888888888888888888888777 5567777776 88888888888888888877666888888887665 35677
Q ss_pred CCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCCcccc
Q 000630 853 PDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKML 932 (1382)
Q Consensus 853 ~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L 932 (1382)
|+.++.+.+|..|++..|.+..+| .|..++.|..|+++.|.+...-.....++++|..|++..|++.+.|..+.-+.+|
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL 277 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSL 277 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhh
Confidence 888888888888888888888888 5778888888888888755433334457888888888888888888888778888
Q ss_pred ceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCC---Cceec-------ccccccc----cccc----
Q 000630 933 DKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILEN---LVILR-------LNECKQL----EKLP---- 994 (1382)
Q Consensus 933 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~---L~~L~-------L~~n~~~----~~~p---- 994 (1382)
++|++++|.+.+ +|..++++ .|+.|-+.+|.+..+...+-+.+. |++|. ++.-.-. ...|
T Consensus 278 ~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 888888877554 56677777 788888888877654433322111 11111 0100000 0001
Q ss_pred ccccCCcccceeeccCccCccCCcccCCCCC---CcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcc
Q 000630 995 ASMGKLKSLVHLLMEETAVTELPESFGMLSS---LMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWR 1071 (1382)
Q Consensus 995 ~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~---L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~ 1071 (1382)
.....+.+.+.|++++-+++.+|...+.-.. ....+++.|+ +..+|..+..+..+.+.-+..|+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-------------L~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-------------LCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-------------HhhhhhhhHHHHHHHHHHHhhcC
Confidence 1123356677788888888888765443332 5667777774 34466666666655554444444
Q ss_pred cCCCCCCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCCC---CCCCcEEEcCCcccccccc-CC
Q 000630 1072 IGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPPL---PSSLEEVNVANCFALESIC-DL 1147 (1382)
Q Consensus 1072 i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~---~~~L~~L~l~~c~~l~~~~-~l 1147 (1382)
..+.+|..+..+++|..|+|++|-+..+|..++.+-.|+.|+|++|+ -..+|.. +..++.+-++++..-.... .+
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHh
Confidence 44667777777788888888888777888877777778888888874 3445542 2345555555554433333 37
Q ss_pred CCCCCCCEEeccCCCCCCCCCcccCccccceeeccCCCC
Q 000630 1148 SNLKSLKRLNLTNCEKLVDISGLESLKSLKWLYMSGCNA 1186 (1382)
Q Consensus 1148 ~~l~~L~~L~ls~~~~~~~~~~~~~l~~L~~L~l~~~~~ 1186 (1382)
.++.+|.+||+.+|.+....|.+++|.+|+.|.+.||++
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 889999999999888777667899999999999999987
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=8.3e-32 Score=298.10 Aligned_cols=364 Identities=23% Similarity=0.292 Sum_probs=314.7
Q ss_pred CCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccc
Q 000630 742 HLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFN 821 (1382)
Q Consensus 742 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~ 821 (1382)
.-++|++++|.+...-+..|.++++|+.+++..|.++.+|.......+|+.|+|.+|.+...-...+.. ++.|+.|+|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHh-Hhhhhhhhhh
Confidence 456799999888777888899999999999999999999988877888999999998866555555554 8999999999
Q ss_pred cccCccCCh-hccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCc-ccCCCcccccccccCccCCCCC
Q 000630 822 YSAVEELPD-SVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPA-SIGSLSYLKAFSVGRCQFLSEL 899 (1382)
Q Consensus 822 ~n~l~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~ 899 (1382)
.|.+.++|. .+..-.++++|+|++|.++..-...|.++.+|..|.|+.|.++.+|. .|.++++|+.|+|..|.+...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 999998875 34455789999999999998888889999999999999999999987 5666999999999999987665
Q ss_pred cccccCCCCCcEEecCCCcCccCccc-cCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccC-ccccCCC
Q 000630 900 PDSIEGLASLVELQLDGTSIRHLPDQ-IGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMP-ESIGILE 977 (1382)
Q Consensus 900 ~~~l~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~l~ 977 (1382)
-..|.++++|+.|.|..|.+..+.+. |..+.+++.|+|..|.+...-..++.+++.|+.|++++|.|..+. .....++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 66789999999999999999988754 677999999999999998888888999999999999999999874 4677889
Q ss_pred CCceeccccccccccccccccCCcccceeeccCccCccCCc-ccCCCCCCcEEEccCCCCcccCcchhhccccccccccc
Q 000630 978 NLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPE-SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSF 1056 (1382)
Q Consensus 978 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l 1056 (1382)
+|+.|+|+.|.+...-+.+|..+..|+.|.|++|.++.+.+ .|..+++|+.|||++|.+... ++.-...|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~---------IEDaa~~f 388 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC---------IEDAAVAF 388 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE---------Eecchhhh
Confidence 99999999999999889999999999999999999987754 577899999999999987654 22233467
Q ss_pred cCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcC-chhccCCcccceeeccc
Q 000630 1057 CNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNL-PSSLRGLSHLKNLLLPY 1116 (1382)
Q Consensus 1057 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~Ls~ 1116 (1382)
.++++|+.|++.+|++....-.+|.++++|++|||.+|.|.+| |..|..+ .|++|.++.
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 8899999999999999887778999999999999999999855 5667777 888887754
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.9e-31 Score=290.85 Aligned_cols=382 Identities=23% Similarity=0.237 Sum_probs=295.3
Q ss_pred ceEEEecCCCCCCCC----CCCCcccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCC-cccEEe
Q 000630 625 LKWLQWKDCKMKTLP----SDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQ-KLEKLV 699 (1382)
Q Consensus 625 L~~L~~~~~~l~~lp----~~~~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~-~L~~L~ 699 (1382)
.+.|++++..+..+. ..+-+..-+.||+++|.++.+.. ..+.++++|+.+++..| .++.+|.++... +|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcH-HHHhcCCcceeeeeccc-hhhhcccccccccceeEEe
Confidence 344444444444331 22345677889999999887632 35678899999999888 567788776655 599999
Q ss_pred ccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccc
Q 000630 700 LERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEK 779 (1382)
Q Consensus 700 L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~ 779 (1382)
|.+|.+...-.+.+..++.|+.|||+.|.+...--.++..-.++++|+|++|.+...--..|..+.+|..|.|+.|.++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 99998777777888889999999999975544333456666789999999988877666778888899999999999999
Q ss_pred cCccccC-CCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChh-ccCCCCCCeEEecccCCCCcCCCCcC
Q 000630 780 LPQSIFH-LVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDS-VGHMGNLEKLSLIGCGSITTIPDSIG 857 (1382)
Q Consensus 780 lp~~l~~-l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~ 857 (1382)
+|...++ +++|+.|+|..|.+ ..+....+..+++|+.|.+..|.+..+.++ |..+.++++|+|..|++...-..++.
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred cCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 9876665 99999999988873 333233344488888888888888877664 56788888888888888777777888
Q ss_pred ccccceeeeccCCCCcccC-cccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccc-cCCcccccee
Q 000630 858 HLKSLIEFLIDGTAVKNLP-ASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQ-IGGLKMLDKL 935 (1382)
Q Consensus 858 ~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L 935 (1382)
+++.|+.|+++.|.|..+. .....+++|+.|+|++|.+....+.++..+..|++|+|++|++..+.+. +..+++|++|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 8888888888888887664 4556778888888888888888888888888888888888888876543 6778888888
Q ss_pred eccCCccCCccc---ccccCCCCCCEEEcccccCcccCc-cccCCCCCceeccccccccccccccccCCcccceeeccC
Q 000630 936 VMRNCLSLKTLP---DSIGSILTLTTLNIVNASITRMPE-SIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEE 1010 (1382)
Q Consensus 936 ~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~ 1010 (1382)
+|++|.+...+. ..|..+++|+.|++.+|++..+|. .|..+++|+.|+|.+|.+-..-|..|..+ .|++|.+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 888888776654 346778888888888888888876 67788888888888888888888888877 777776654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.1e-32 Score=302.25 Aligned_cols=382 Identities=22% Similarity=0.296 Sum_probs=254.4
Q ss_pred CCCCceEeccCCCCC-ccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCCCCcEEE
Q 000630 716 LSSLLHLNLRDCRNL-IELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLN 794 (1382)
Q Consensus 716 l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 794 (1382)
|+-.+-.|+++|.+. ..+|..+..+++++.|.|.. ..+..+|+.++.+.+|++|.+.+|.+.++-..+..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 344455555555555 34555555556666665554 3445566666666666666666666666555566666666666
Q ss_pred cCCCCCC-CCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCc
Q 000630 795 LGKCKSL-KQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVK 873 (1382)
Q Consensus 795 l~~~~~~-~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 873 (1382)
+..|++. ..+|..++. +..|+.|+++.|++.++|..+..-+++-.|+|++|++.+.-...+.++..|-.|+|++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcc-cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 6655532 235666665 66666666666666677776666677777777776654433334566777777777777777
Q ss_pred ccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCC
Q 000630 874 NLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSI 953 (1382)
Q Consensus 874 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 953 (1382)
.+|..+..+.+|++|.|++|.+...-...+..+++|+.|.+++++-+ +..+|.++..+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT----------------------l~N~Ptsld~l 221 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT----------------------LDNIPTSLDDL 221 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch----------------------hhcCCCchhhh
Confidence 77777777777777777777654322222333444445555543322 22355556666
Q ss_pred CCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccC
Q 000630 954 LTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKK 1033 (1382)
Q Consensus 954 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~ 1033 (1382)
.+|..+|++.|++..+|+.+.++++|+.|+||+|++.+ +....+...+|+.|+++.|+++.+|..+..++.|+.|.+.+
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence 66666677777777777777777777777777776654 33344556677778888888888888888888888888888
Q ss_pred CCCcccCcchhhccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCchhccCCcccceee
Q 000630 1034 PSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLL 1113 (1382)
Q Consensus 1034 n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 1113 (1382)
|+++ +..+|+.++.+.+|+.+...+|.+ ...|+.+..|..|+.|.|++|.+..+|..+.-|+-|+.||
T Consensus 301 NkL~-----------FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 301 NKLT-----------FEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD 368 (1255)
T ss_pred Cccc-----------ccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence 7653 345788888888899888888887 5788999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCC----CCCcEEEc
Q 000630 1114 LPYCQELKSLPPLP----SSLEEVNV 1135 (1382)
Q Consensus 1114 Ls~n~~l~~lp~~~----~~L~~L~l 1135 (1382)
+..|+.+.--|. | .+++..+|
T Consensus 369 lreNpnLVMPPK-P~da~~~lefYNI 393 (1255)
T KOG0444|consen 369 LRENPNLVMPPK-PNDARKKLEFYNI 393 (1255)
T ss_pred ccCCcCccCCCC-cchhhhcceeeec
Confidence 999987754443 3 24554444
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.4e-31 Score=295.20 Aligned_cols=367 Identities=23% Similarity=0.319 Sum_probs=284.0
Q ss_pred CCCCCCEEEccCCCCC-CCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccc
Q 000630 739 GLKHLENLILSDCSKL-KELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKE 817 (1382)
Q Consensus 739 ~l~~L~~L~Ls~~~~~-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~ 817 (1382)
-|+-.+-.|+++|.+. +.+|..+..|++++.|.|..+.+..+|..++.+.+|++|.+++|++.. +-..+.. ++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSD-LPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhcc-chhhHH
Confidence 4556677888998887 568888889999999999999888888888888888888888776332 2222222 556666
Q ss_pred cccccccCc--cCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccC
Q 000630 818 LSFNYSAVE--ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQF 895 (1382)
Q Consensus 818 L~l~~n~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~ 895 (1382)
+.+..|++. .+|..+..+..|..|+|+ .|.+.+.|..+..-.++-.|+|++|++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLS------------------------hNqL~EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLS------------------------HNQLREVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecc------------------------hhhhhhcchhhhhhcCcEEEEcccCcc
Confidence 666665554 455555555555555554 444444554444444555555555554
Q ss_pred CCCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccC--cccCccc
Q 000630 896 LSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASI--TRMPESI 973 (1382)
Q Consensus 896 ~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i--~~l~~~~ 973 (1382)
.+.....+.+++.|-.|+||+|++..+|..+..+.+|++|.|++|++.-.--..+..+++|+.|.+++.+- ..+|.++
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 44333456677788888888888888898888899999999999887544333444677888889988764 4799999
Q ss_pred cCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhcccccccc
Q 000630 974 GILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLP 1053 (1382)
Q Consensus 974 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p 1053 (1382)
..+.+|..+++|.|.+ ..+|..+-++++|+.|+|++|.|+++....+...+|++|++|.|++ ..+|
T Consensus 219 d~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-------------t~LP 284 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-------------TVLP 284 (1255)
T ss_pred hhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-------------ccch
Confidence 9999999999999875 5689999999999999999999999988888899999999999954 5689
Q ss_pred ccccCCCCcceecccCcccC-CCCCCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCC---CCCC
Q 000630 1054 TSFCNLSSLEELDAQGWRIG-GKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPP---LPSS 1129 (1382)
Q Consensus 1054 ~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~---~~~~ 1129 (1382)
..++.++.|+.|.+.+|+++ .-+|+.++.+..|+.+..++|++.-+|+++..|..|+.|.|++|+++ .+|. +.+.
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 99999999999999999988 56899999999999999999999999999999999999999999854 4565 4567
Q ss_pred CcEEEcCCccccccccC
Q 000630 1130 LEEVNVANCFALESICD 1146 (1382)
Q Consensus 1130 L~~L~l~~c~~l~~~~~ 1146 (1382)
|+.|++.+|+.+..++.
T Consensus 364 l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cceeeccCCcCccCCCC
Confidence 77777777777765544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-31 Score=311.69 Aligned_cols=496 Identities=22% Similarity=0.253 Sum_probs=281.9
Q ss_pred ecCCCCCCCCCCC-CcccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCCcccEEeccCcccccc
Q 000630 630 WKDCKMKTLPSDF-RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTK 708 (1382)
Q Consensus 630 ~~~~~l~~lp~~~-~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 708 (1382)
.+++.++-+|... ....+..|+++.|.+-..+- ......-+|+.|||++|......-.+..+.+|+.|+++.| ....
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl-~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~ 82 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRNSLLSRPL-EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRS 82 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhccccccccCch-HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhh
Confidence 3444555555433 23346777777776655432 2233344477788877755444335777777788887776 3455
Q ss_pred ccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCc-cccccCccccCC
Q 000630 709 IHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGT-AIEKLPQSIFHL 787 (1382)
Q Consensus 709 ~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~-~i~~lp~~l~~l 787 (1382)
+|.+.+++++|++|+|.+ +.+..+|.++..+++|++|+++.|. .+.+|..+..+..+..+..++| .+..++..
T Consensus 83 vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~---- 156 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQT---- 156 (1081)
T ss_pred Cchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccc----
Confidence 667777788888888876 3566777777778888888888743 4566777777777777777777 22223221
Q ss_pred CCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeec
Q 000630 788 VKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLI 867 (1382)
Q Consensus 788 ~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 867 (1382)
.++.+++..+...+.++..+.. +.+ .|++.+|.+. ...+.++.+|+.|....|.+... .-..++|+.|+.
T Consensus 157 -~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a 226 (1081)
T KOG0618|consen 157 -SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYA 226 (1081)
T ss_pred -cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh--hhhhhhccchhhhhhhhcccceE----EecCcchheeee
Confidence 1555566555555555554443 333 4666666655 12234455555555544443221 112234555555
Q ss_pred cCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCccc
Q 000630 868 DGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLP 947 (1382)
Q Consensus 868 ~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 947 (1382)
+.|.+..+- ......+|++++++.|++.+ +|.++..+.+|+.|+..+|+++.+|..+....+|+.|.+..|.+ ..+|
T Consensus 227 ~~n~l~~~~-~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip 303 (1081)
T KOG0618|consen 227 DHNPLTTLD-VHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIP 303 (1081)
T ss_pred ccCcceeec-cccccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCC
Confidence 555544221 11223455666666655443 33556666666666666666666665555556666666655543 2334
Q ss_pred ccccCCCCCCEEEcccccCcccCccccC-C-CCCceeccccccccccccccccCCcccceeeccCccCc-cCCcccCCCC
Q 000630 948 DSIGSILTLTTLNIVNASITRMPESIGI-L-ENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVT-ELPESFGMLS 1024 (1382)
Q Consensus 948 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~-l-~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~i~~~l~~l~ 1024 (1382)
.....+.+|++|+|..|++..+|..+-. + .+|..|+.+.|++.......-..++.|+.|++.+|.++ ..-+.+.+..
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 4455556666666666666666553321 1 12455555555443322222234556666666666666 3334456666
Q ss_pred CCcEEEccCCCCcccCcchhhccccccccc-cccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCchhc
Q 000630 1025 SLMVLKMKKPSVKARNSSAREKQKLTVLPT-SFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSL 1103 (1382)
Q Consensus 1025 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l 1103 (1382)
+|++|+|++|.+ ..+|. .+.++..|++|+||+|+++ .+|..+..++.|++|...+|++..+| .+
T Consensus 384 hLKVLhLsyNrL-------------~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 384 HLKVLHLSYNRL-------------NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred ceeeeeeccccc-------------ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hh
Confidence 667777766643 22333 3566777777777777774 45566777777777777777777777 56
Q ss_pred cCCcccceeecccccCCCC-CCC-CC-CCCcEEEcCCccccc-cccCCCCCCCCCEEeccCC
Q 000630 1104 RGLSHLKNLLLPYCQELKS-LPP-LP-SSLEEVNVANCFALE-SICDLSNLKSLKRLNLTNC 1161 (1382)
Q Consensus 1104 ~~l~~L~~L~Ls~n~~l~~-lp~-~~-~~L~~L~l~~c~~l~-~~~~l~~l~~L~~L~ls~~ 1161 (1382)
..++.|+.+|++.|++... +|. .| ++|++||+++|..+. .-..+..+.++..+++.-+
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 6777777777777765432 333 44 677777777766432 1122444445555555433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-31 Score=312.01 Aligned_cols=452 Identities=21% Similarity=0.238 Sum_probs=262.4
Q ss_pred EecCCCCccccccccCccccccccEEecCCCcCCCcC-CCCCCCCcccEEeccCccccccccccccCCCCCceEeccCCC
Q 000630 650 LDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASI-PDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCR 728 (1382)
Q Consensus 650 L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~ 728 (1382)
+|++...++-++. ..-.-..+..|+++.|.++... +...+.-+|+.|++++|. .+..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~~ip~--~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n- 78 (1081)
T KOG0618|consen 3 VDASDEQLELIPE--QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRN- 78 (1081)
T ss_pred cccccccCcccch--hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccchh-
Confidence 5666666666654 2222233777777777544322 123344457777777764 3455666777777777777764
Q ss_pred CCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhh
Q 000630 729 NLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCI 808 (1382)
Q Consensus 729 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~ 808 (1382)
.+...|.+.+++.+|++|.|.+ +.+..+|.++..+++|+.|+++.|.+..+|.-+..++.+..+..++|..+..++.
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred hHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 4556666667777777777764 4566677777777777777777777777777777777777777776632222221
Q ss_pred hhhcccccccccccccCc-cCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCccccc
Q 000630 809 GTQLIALKELSFNYSAVE-ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKA 887 (1382)
Q Consensus 809 ~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~ 887 (1382)
..++.+++..|.+. .++..+..+++ .|+|..|... -..+.++.+|+.+....|.+..+. -.-++|+.
T Consensus 156 ----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~ 223 (1081)
T KOG0618|consen 156 ----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTA 223 (1081)
T ss_pred ----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchhe
Confidence 22555666555554 45555555544 5666666654 123455566666666666555432 23456666
Q ss_pred ccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCc
Q 000630 888 FSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASIT 967 (1382)
Q Consensus 888 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 967 (1382)
|+.+.|.+....+ -....+|++++++.|+++.+|.+++.+.+|+.|...+|.+ ..+|..+....+|+.|.+..|.+.
T Consensus 224 L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 224 LYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh
Confidence 6777776653322 1234567777777777777777777777777777776666 455555566666777777777777
Q ss_pred ccCccccCCCCCceeccccccccccccccccCCcc-cceeeccCccCccCCcc-cCCCCCCcEEEccCCCCcccCcchhh
Q 000630 968 RMPESIGILENLVILRLNECKQLEKLPASMGKLKS-LVHLLMEETAVTELPES-FGMLSSLMVLKMKKPSVKARNSSARE 1045 (1382)
Q Consensus 968 ~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~-L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~ 1045 (1382)
.+|.....+.+|++|+|..|.+....+..+.-+.. |..|+.+.|.+...|.. =...+.|+.|.+.+|.++..
T Consensus 301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~------ 374 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS------ 374 (1081)
T ss_pred hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc------
Confidence 66666666666666666666654433333333322 55555555555554421 11234455555555544332
Q ss_pred ccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCC
Q 000630 1046 KQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPP 1125 (1382)
Q Consensus 1046 ~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 1125 (1382)
.-+.+.+...|+.|+|++|++.......+.++..|+.|+||+|+++.+|..+..+..|++|...+|+ +..+|+
T Consensus 375 ------c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe 447 (1081)
T KOG0618|consen 375 ------CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPE 447 (1081)
T ss_pred ------chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechh
Confidence 2223455556666666666664444444555666666666666666666666666666666555554 334444
Q ss_pred C--CCCCcEEEcC
Q 000630 1126 L--PSSLEEVNVA 1136 (1382)
Q Consensus 1126 ~--~~~L~~L~l~ 1136 (1382)
. .+.|+.+|++
T Consensus 448 ~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLS 460 (1081)
T ss_pred hhhcCcceEEecc
Confidence 2 2445555554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.6e-22 Score=269.98 Aligned_cols=401 Identities=22% Similarity=0.334 Sum_probs=283.3
Q ss_pred ccCCCCCCeEEecccC------CCCcCCCCcCcc-ccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCccccc
Q 000630 832 VGHMGNLEKLSLIGCG------SITTIPDSIGHL-KSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIE 904 (1382)
Q Consensus 832 l~~l~~L~~L~L~~~~------~~~~~~~~l~~l-~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~ 904 (1382)
+..+++|+.|.+..+. ....+|..+..+ .+|+.|.+.++.+..+|..+ .+.+|+.|++.+|.+. .++..+.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccccc
Confidence 3444555555553321 112344444444 34777777777777777665 4567777777777644 3555666
Q ss_pred CCCCCcEEecCCCc-CccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccc-cCcccCccccCCCCCcee
Q 000630 905 GLASLVELQLDGTS-IRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNA-SITRMPESIGILENLVIL 982 (1382)
Q Consensus 905 ~l~~L~~L~L~~n~-l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L 982 (1382)
.+++|+.|+|+++. +..+|. +..+++|+.|++++|..+..+|..+.++++|+.|++++| .+..+|..+ ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE
Confidence 77788888887754 556663 667788888888888888888888888888888888876 466777655 68889999
Q ss_pred ccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCc
Q 000630 983 RLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSL 1062 (1382)
Q Consensus 983 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L 1062 (1382)
++++|..++.+|.. .++|+.|++++|.+..+|..+ .+++|..|.+.++....... ......+.....+++|
T Consensus 710 ~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~-----~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 710 NLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWE-----RVQPLTPLMTMLSPSL 780 (1153)
T ss_pred eCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccc-----cccccchhhhhccccc
Confidence 99998887777753 457888999999988888765 57888888887653211100 0001111223345789
Q ss_pred ceecccCcccCCCCCCccCCCCCCCEeeccCC-CCCcCchhccCCcccceeecccccCCCCCCCCCCCCcEEEcCCcccc
Q 000630 1063 EELDAQGWRIGGKIPDDFEKLSSLEILNLGNN-NFCNLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFAL 1141 (1382)
Q Consensus 1063 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l 1141 (1382)
+.|++++|...+.+|..++++++|+.|+|++| ++..+|..+ ++++|+.|+|++|..+..+|..+++|+.|+++++...
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 99999999888889999999999999999986 567888776 7899999999999999999998899999999987655
Q ss_pred ccccCCCCCCCCCEEeccCCCCCCCCC-cccCccccceeeccCCCCCchh-hhc----------------------cccc
Q 000630 1142 ESICDLSNLKSLKRLNLTNCEKLVDIS-GLESLKSLKWLYMSGCNACSAA-VKR----------------------RLSK 1197 (1382)
Q Consensus 1142 ~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~----------------------~l~~ 1197 (1382)
+.+..+..+++|+.|++++|+.+..++ ....+++|+.+++++|..+... ... .+..
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n 939 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN 939 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccc
Confidence 555567888999999999999888887 5677888888899888754311 000 0000
Q ss_pred -------c---ccCCceEEEcCCCCCCCcccCCcee-----EeccC---CceeeeeEEEEEEecCCC
Q 000630 1198 -------V---HFKNLRSLSMPGTEIPDWFSPDMVR-----FTERR---NHKIEGVIIGVVVSLNHQ 1246 (1382)
Q Consensus 1198 -------~---~~~~l~~l~l~~~~ip~~f~~~~~~-----~~~~~---~~~~~g~~~~~vva~k~~ 1246 (1382)
. .......+.+||.++|.||.|+... +..++ ...+.|+..|+||+++..
T Consensus 940 C~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210 940 CFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred ccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcc
Confidence 0 0012345789999999999986433 22222 235789999999998865
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=1.7e-18 Score=212.82 Aligned_cols=263 Identities=25% Similarity=0.263 Sum_probs=153.4
Q ss_pred CCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeec
Q 000630 788 VKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLI 867 (1382)
Q Consensus 788 ~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 867 (1382)
.+-..|+++.+.+ ..+|..+. ++|+.|++.+|.++.+|.. +++|++|++++|.+. .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 3456788888764 46777653 4677778888888777752 466777777776554 33432 345666666
Q ss_pred cCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCccc
Q 000630 868 DGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLP 947 (1382)
Q Consensus 868 ~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 947 (1382)
++|.+..+|.. +.+|+.|++++|.+.. +|. .+++|+.|++++|.++.+|.. .
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l---p------------------ 321 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL---P------------------ 321 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC---c------------------
Confidence 66666655542 2345555555555432 222 124455555555555544431 1
Q ss_pred ccccCCCCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCc
Q 000630 948 DSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLM 1027 (1382)
Q Consensus 948 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~ 1027 (1382)
.+|+.|++++|.++.+|.. ..+|+.|+|++|++.+ +|.. .++|+.|++++|.++.+|.. .++|+
T Consensus 322 ------~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~ 385 (788)
T PRK15387 322 ------SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLK 385 (788)
T ss_pred ------ccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccc
Confidence 2344445555555544431 1345555555555443 3321 23455566666666665543 24566
Q ss_pred EEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCchhccCCc
Q 000630 1028 VLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLS 1107 (1382)
Q Consensus 1028 ~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~ 1107 (1382)
.|++++|.+.. +|.. .++|+.|++++|.+++ +|.. +.+|+.|++++|+|+.+|..+..++
T Consensus 386 ~LdLs~N~Lt~-------------LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~ 445 (788)
T PRK15387 386 ELIVSGNRLTS-------------LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPESLIHLS 445 (788)
T ss_pred eEEecCCcccC-------------CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccChHHhhcc
Confidence 67776665432 2221 2457777777777764 4543 3467778888888888888888888
Q ss_pred ccceeecccccCCCCCCC
Q 000630 1108 HLKNLLLPYCQELKSLPP 1125 (1382)
Q Consensus 1108 ~L~~L~Ls~n~~l~~lp~ 1125 (1382)
+|+.|+|++|++.+.+|.
T Consensus 446 ~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 446 SETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCeEECCCCCCCchHHH
Confidence 888888888887766554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=6.6e-18 Score=207.75 Aligned_cols=262 Identities=25% Similarity=0.259 Sum_probs=141.4
Q ss_pred CCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecC
Q 000630 836 GNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLD 915 (1382)
Q Consensus 836 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 915 (1382)
..-..|+++++.+. .+|..+. ++|+.|.+.+|.++.+|.. +++|++|++++|.+.. +|. ..++|+.|+++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence 34567888888665 5777664 3788888888888887752 4567777777766553 332 23566666666
Q ss_pred CCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCCCceeccccccccccccc
Q 000630 916 GTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPA 995 (1382)
Q Consensus 916 ~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~ 995 (1382)
+|.+..+|.. +++|+.|++++|.+.. +|. ..++|+.|++++|.+..+|.. ..+|+.|++++|.+.+ +|.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-ccc
Confidence 6666655542 2345555665554432 332 124555555555555555431 1234444555544432 221
Q ss_pred cccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCC
Q 000630 996 SMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGK 1075 (1382)
Q Consensus 996 ~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~ 1075 (1382)
. ..+|+.|++++|+++.+|.. .+ +|+.|++++|.++.
T Consensus 340 l---p~~Lq~LdLS~N~Ls~LP~l---p~------------------------------------~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 340 L---PSGLQELSVSDNQLASLPTL---PS------------------------------------ELYKLWAYNNRLTS- 376 (788)
T ss_pred c---ccccceEecCCCccCCCCCC---Cc------------------------------------ccceehhhcccccc-
Confidence 1 12344444444444444431 12 34444555555442
Q ss_pred CCCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCCCCCCCcEEEcCCccccccccCCCCCCCCCE
Q 000630 1076 IPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFALESICDLSNLKSLKR 1155 (1382)
Q Consensus 1076 ~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~ 1155 (1382)
+|.. .++|+.|+|++|.|+.+|... ++|+.|++++|++ ..+|..+.+|+.|++++|..-..+..+..+++|+.
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449 (788)
T ss_pred Cccc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCcC-CCCCcchhhhhhhhhccCcccccChHHhhccCCCe
Confidence 3321 234555555555555555322 3455555555553 33555555555555555443333334667788888
Q ss_pred EeccCCCCCCCCC
Q 000630 1156 LNLTNCEKLVDIS 1168 (1382)
Q Consensus 1156 L~ls~~~~~~~~~ 1168 (1382)
|+|++|++.+..+
T Consensus 450 LdLs~N~Ls~~~~ 462 (788)
T PRK15387 450 VNLEGNPLSERTL 462 (788)
T ss_pred EECCCCCCCchHH
Confidence 8888888776544
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.74 E-value=8.8e-18 Score=168.90 Aligned_cols=132 Identities=38% Similarity=0.701 Sum_probs=112.7
Q ss_pred cccEEEcccc-ccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCcccChhhHHHHHH
Q 000630 14 RWDVFLSFRG-EDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNYGSSRWCLEELAK 92 (1382)
Q Consensus 14 ~~dvfis~~~-~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~w~~~e~~~ 92 (1382)
+|||||||++ +|..+.|+.+|...|...|+.+|.|++.. |.....+|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 45568999999999999999999996543 33333499999999999999999999999999999999
Q ss_pred HHHc-----CCeEEEEEecCCCccccccccchHHHHHHHhhhcCchhH-HHHHHHHHHHhc
Q 000630 93 ICEL-----NRLILPVFYKVDPSDVRRQQGPFKQDFERHQDRFGEDTV-SQWRKAMMKVGG 147 (1382)
Q Consensus 93 ~~~~-----~~~~ipv~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~-~~w~~al~~~~~ 147 (1382)
+.++ ..+||||+++..|+++..+.+.++..+......+..++. ..|+.++..++.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 8864 389999999999999999999999999887556655444 689999988754
No 19
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.74 E-value=5.2e-19 Score=176.74 Aligned_cols=127 Identities=37% Similarity=0.583 Sum_probs=111.5
Q ss_pred EEEccccccccchHHHHHHHHHHhC--CcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCcccChhhHHHHHHHH
Q 000630 17 VFLSFRGEDTRDTITRNLYNSLHDH--GVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNYGSSRWCLEELAKIC 94 (1382)
Q Consensus 17 vfis~~~~d~~~~~~~~l~~~l~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~w~~~e~~~~~ 94 (1382)
|||||++.|.+..|+.+|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999333579999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HcC------CeEEEEEecCCCcccc-ccccchHHHHHHHhhhcCc----hhHHHHHHHHH
Q 000630 95 ELN------RLILPVFYKVDPSDVR-RQQGPFKQDFERHQDRFGE----DTVSQWRKAMM 143 (1382)
Q Consensus 95 ~~~------~~~ipv~~~v~p~~v~-~~~~~~~~~~~~~~~~~~~----~~~~~w~~al~ 143 (1382)
++. +.|+||||+|.+++++ .+.+.|...|..+..-.+. .+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 754 7899999999999999 7999999988877665543 46789998875
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-19 Score=193.19 Aligned_cols=390 Identities=20% Similarity=0.223 Sum_probs=202.2
Q ss_pred cCCCCcccccCcceEEEecCCCCCCCCCC-C-CcccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCC--
Q 000630 613 KLEGSFKFLPHELKWLQWKDCKMKTLPSD-F-RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPD-- 688 (1382)
Q Consensus 613 ~l~~~~~~lp~~L~~L~~~~~~l~~lp~~-~-~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~-- 688 (1382)
.+......+|.+...+++..|.++.+|.. | .+++|+.||||+|.|+.+.+ ..++.+++|-.|-+-++..++.+|.
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 34445566677777777777777777644 2 45566666666666666643 3556666665555555444555552
Q ss_pred CCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCCc-cCCCCCCCCEEEccCCCCCCCCcccccccCCc
Q 000630 689 LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPS-DVSGLKHLENLILSDCSKLKELPEDICSMRSL 767 (1382)
Q Consensus 689 l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L 767 (1382)
|.++..|+.|.+.-|.+.-.....+..|++|..|.+.+|.+ ..++. .+..+..++++.+..|.+... .+++.|
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wl 209 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWL 209 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccc-----cccchh
Confidence 55555555555555544444445555555555555555432 22332 444555555555544332110 111111
Q ss_pred cEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhccccccc----ccccccCccCC-hhccCCCCCCeEE
Q 000630 768 KELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKEL----SFNYSAVEELP-DSVGHMGNLEKLS 842 (1382)
Q Consensus 768 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L----~l~~n~l~~l~-~~l~~l~~L~~L~ 842 (1382)
..-. ...|..++...-..-..+.+.+ ..+++..-+ ...++.+ ....+.....| ..|+.+++|++|+
T Consensus 210 a~~~------a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 210 ADDL------AMNPIETSGARCVSPYRLYYKR-INQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred hhHH------hhchhhcccceecchHHHHHHH-hcccchhhh--hhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 0000 0111111111111111222211 111111111 1111111 11111122222 2367888888888
Q ss_pred ecccCCCCcCCCCcCccccceeeeccCCCCcccCc-ccCCCcccccccccCccCCCCCcccccCCCCCcEEecCCCcCc-
Q 000630 843 LIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPA-SIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR- 920 (1382)
Q Consensus 843 L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~- 920 (1382)
|++|.+...-+.+|.....+++|.|..|++..+.. .|..+..|+.|+|++|+++...|..|..+.+|.+|++-.|.+.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 88888888888888888888999998888876654 5667888888888888888888888888888888888777654
Q ss_pred -----cCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCccc----Cccc---------cCCCCCcee
Q 000630 921 -----HLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRM----PESI---------GILENLVIL 982 (1382)
Q Consensus 921 -----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l----~~~~---------~~l~~L~~L 982 (1382)
-+-.|+.+ ....+..| -+....++.+.+++..+... |+.. ..++-+.+.
T Consensus 361 nC~l~wl~~Wlr~-----------~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tV 427 (498)
T KOG4237|consen 361 NCRLAWLGEWLRK-----------KSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTV 427 (498)
T ss_pred ccchHHHHHHHhh-----------CCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhh
Confidence 11122211 11111111 01122344555555444321 1111 122333333
Q ss_pred ccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCC
Q 000630 983 RLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSV 1036 (1382)
Q Consensus 983 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~ 1036 (1382)
.=-.|+.+..+|..+. ....+|++.+|.++.+|.. .+.+| .+++++|.+
T Consensus 428 vRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 428 VRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred HhhcccchhhcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCce
Confidence 3333444444444332 2345677777777777765 45556 666666654
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=3.8e-19 Score=190.21 Aligned_cols=409 Identities=17% Similarity=0.140 Sum_probs=202.8
Q ss_pred cEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCc
Q 000630 696 EKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGT 775 (1382)
Q Consensus 696 ~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~ 775 (1382)
..++|..|.+....+.+|+.+++||.|||++|.+...-|..|.++.+|.+|-+.++ |
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~-----------------------N 126 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN-----------------------N 126 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC-----------------------C
Confidence 44555555444444445555555555555555444444444444444444444443 4
Q ss_pred cccccCcc-ccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCCh-hccCCCCCCeEEecccCCCC---
Q 000630 776 AIEKLPQS-IFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPD-SVGHMGNLEKLSLIGCGSIT--- 850 (1382)
Q Consensus 776 ~i~~lp~~-l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~~~~~~--- 850 (1382)
+|+.+|.. +..+..|+.|.+.-|...-.....+. .+++|..|.+.+|.+..++. .+..+..++.+++..|.+..
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~-dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR-DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH-HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 45545433 22355555555554442222222233 36667777777777776665 56667777777776665321
Q ss_pred ---------cCCCCcCccccceeeeccCCCCcccCcccC--CCcccccccccCccCCCCCc-ccccCCCCCcEEecCCCc
Q 000630 851 ---------TIPDSIGHLKSLIEFLIDGTAVKNLPASIG--SLSYLKAFSVGRCQFLSELP-DSIEGLASLVELQLDGTS 918 (1382)
Q Consensus 851 ---------~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~--~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~n~ 918 (1382)
..|..++......-..+.+..+.++++.-. .+..+.+=-.+.|......| ..|..+++|+.|+|++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 112223333333333344444443332110 11122111223333333333 256777888888888888
Q ss_pred CccCc-cccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCccc-CccccCCCCCceeccccccccccc-cc
Q 000630 919 IRHLP-DQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRM-PESIGILENLVILRLNECKQLEKL-PA 995 (1382)
Q Consensus 919 l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~~-p~ 995 (1382)
++.+. .+|.+...++.|.|..|++-..-...|.++..|+.|+|++|+|+.+ |..|..+.+|.+|+|-.|++.-.- -.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 77653 4567777777777777776665556667777777777777777754 445666777777777666643210 00
Q ss_pred cccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCC
Q 000630 996 SMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGK 1075 (1382)
Q Consensus 996 ~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~ 1075 (1382)
+++. +|..+.....|. .+....++.+.++...+........+.......+..-..++.+...-=..|.....
T Consensus 366 wl~~-------Wlr~~~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~ 437 (498)
T KOG4237|consen 366 WLGE-------WLRKKSVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKL 437 (498)
T ss_pred HHHH-------HHhhCCCCCCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhh
Confidence 0000 011111111111 12223344444444433221111000011111111122344444333333333344
Q ss_pred CCCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCCCCCCCcEEEcCCccccccccCCCCCCCCCE
Q 000630 1076 IPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFALESICDLSNLKSLKR 1155 (1382)
Q Consensus 1076 ~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~ 1155 (1382)
+|..+ ...-..|++.+|.++.+|.. .+.+| .+++++|++.. +++| .|+++..|.+
T Consensus 438 lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~-------------Lsn~-------tf~n~tql~t 492 (498)
T KOG4237|consen 438 LPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISS-------------LSNY-------TFSNMTQLST 492 (498)
T ss_pred cCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceeh-------------hhcc-------cccchhhhhe
Confidence 44433 22456778888888888876 55667 78888877321 1121 3566777777
Q ss_pred EeccCC
Q 000630 1156 LNLTNC 1161 (1382)
Q Consensus 1156 L~ls~~ 1161 (1382)
|.|++|
T Consensus 493 lilsyn 498 (498)
T KOG4237|consen 493 LILSYN 498 (498)
T ss_pred eEEecC
Confidence 777654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=2.7e-17 Score=204.19 Aligned_cols=165 Identities=19% Similarity=0.369 Sum_probs=109.8
Q ss_pred CCCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhccccccccc
Q 000630 741 KHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSF 820 (1382)
Q Consensus 741 ~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l 820 (1382)
.+...|+++++. +..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+ ..+|..+ ..+|+.|++
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l---~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATL---PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhh---hccccEEEC
Confidence 456788888754 446776553 579999999999999987665 5899999998874 4677654 346888888
Q ss_pred ccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCc
Q 000630 821 NYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELP 900 (1382)
Q Consensus 821 ~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 900 (1382)
++|.+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++|.+.. +|
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 249 SINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred cCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CC
Confidence 8888888877653 46788888777655 4565443 467777777777776665332 356666666665543 23
Q ss_pred ccccCCCCCcEEecCCCcCccCcc
Q 000630 901 DSIEGLASLVELQLDGTSIRHLPD 924 (1382)
Q Consensus 901 ~~l~~l~~L~~L~L~~n~l~~l~~ 924 (1382)
..+ .++|+.|++++|.++.+|.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred ccc--cccceeccccCCccccCCh
Confidence 222 2455555555555555543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=6.1e-17 Score=201.11 Aligned_cols=227 Identities=25% Similarity=0.435 Sum_probs=116.6
Q ss_pred CCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCC
Q 000630 837 NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDG 916 (1382)
Q Consensus 837 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 916 (1382)
+...|+++++.+. .+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++|.+. .+|..+ .++|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcC
Confidence 4566777666543 3454432 356677777777766665432 35666666655544 233322 13455555555
Q ss_pred CcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCCCceecccccccccccccc
Q 000630 917 TSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPAS 996 (1382)
Q Consensus 917 n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~ 996 (1382)
|.+..+|..+. ++|+.|++ ++|.+..+|..+. ++|+.|++++|.+.+ +|..
T Consensus 251 N~L~~LP~~l~--s~L~~L~L------------------------s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~ 301 (754)
T PRK15370 251 NRITELPERLP--SALQSLDL------------------------FHNKISCLPENLP--EELRYLSVYDNSIRT-LPAH 301 (754)
T ss_pred CccCcCChhHh--CCCCEEEC------------------------cCCccCccccccC--CCCcEEECCCCcccc-Cccc
Confidence 55555554332 24444444 4444444444332 344555555444332 2322
Q ss_pred ccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCCC
Q 000630 997 MGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKI 1076 (1382)
Q Consensus 997 l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~ 1076 (1382)
+. ++|+.|++++|.++.+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+
T Consensus 302 lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-------------LP~~l~--~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 302 LP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-------------LPASLP--PELQVLDVSKNQIT-VL 361 (754)
T ss_pred ch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-------------CChhhc--CcccEEECCCCCCC-cC
Confidence 21 245555555555555554332 455555555554322 232221 45666666666664 34
Q ss_pred CCccCCCCCCCEeeccCCCCCcCchhccCCcccceeecccccCCCCCCC
Q 000630 1077 PDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPP 1125 (1382)
Q Consensus 1077 ~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~~l~~lp~ 1125 (1382)
|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++|++. .+|.
T Consensus 362 P~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 362 PETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLV-RLPE 405 (754)
T ss_pred Chhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcc-cCch
Confidence 4433 2467777777777776666553 35667777776643 4443
No 24
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.54 E-value=1.7e-15 Score=142.32 Aligned_cols=96 Identities=33% Similarity=0.580 Sum_probs=82.2
Q ss_pred EEEccccccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCcccChhhHHHHHHHHHc
Q 000630 17 VFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNYGSSRWCLEELAKICEL 96 (1382)
Q Consensus 17 vfis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~w~~~e~~~~~~~ 96 (1382)
|||||+++| +.||++|.+.|+..|+++|+|. ++.+|+++.+.|.++|++|+.+|+++|++|..|.||..|+..+.+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~ 77 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKR 77 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCT
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHC
Confidence 899999999 6799999999999999999996 9999999999999999999999999999999999999999999877
Q ss_pred CCeEEEEEecCCCcccccccc
Q 000630 97 NRLILPVFYKVDPSDVRRQQG 117 (1382)
Q Consensus 97 ~~~~ipv~~~v~p~~v~~~~~ 117 (1382)
++.||||. +++.+++...+
T Consensus 78 ~~~iipv~--~~~~~~p~~l~ 96 (102)
T PF13676_consen 78 GKPIIPVR--LDPCELPGPLR 96 (102)
T ss_dssp SESEEEEE--CSGGGS-GGGG
T ss_pred CCEEEEEE--ECCcCCCHHHH
Confidence 78899995 77766655443
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=4.2e-16 Score=147.61 Aligned_cols=162 Identities=28% Similarity=0.470 Sum_probs=142.2
Q ss_pred ccCCCCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEE
Q 000630 950 IGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVL 1029 (1382)
Q Consensus 950 ~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L 1029 (1382)
+.++.+++.|.+++|.++.+|+.+..+.+|+.|++++|++ +.+|.+++.++.|+.|+++-|++..+|..|+.++.|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 3456677888888999999999999999999999988875 567888999999999999999999999999999999999
Q ss_pred EccCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCchhccCCccc
Q 000630 1030 KMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHL 1109 (1382)
Q Consensus 1030 ~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 1109 (1382)
|+.+|++.. ..+|..|-.++.|+.|++++|.+ ..+|..++++++|+.|.+..|.+-++|..++.++.|
T Consensus 108 dltynnl~e-----------~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 108 DLTYNNLNE-----------NSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred hcccccccc-----------ccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 999987643 35788888899999999999998 588999999999999999999999999999999999
Q ss_pred ceeecccccCCCCCCC
Q 000630 1110 KNLLLPYCQELKSLPP 1125 (1382)
Q Consensus 1110 ~~L~Ls~n~~l~~lp~ 1125 (1382)
++|.+.+|++ .-+|+
T Consensus 176 relhiqgnrl-~vlpp 190 (264)
T KOG0617|consen 176 RELHIQGNRL-TVLPP 190 (264)
T ss_pred HHHhccccee-eecCh
Confidence 9999999984 34443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.2e-15 Score=177.78 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=95.3
Q ss_pred ccCCCCCcEEecCCCcCc-cCccccCCc---cccceeeccCCccCC----cccccccCC-CCCCEEEcccccCc-----c
Q 000630 903 IEGLASLVELQLDGTSIR-HLPDQIGGL---KMLDKLVMRNCLSLK----TLPDSIGSI-LTLTTLNIVNASIT-----R 968 (1382)
Q Consensus 903 l~~l~~L~~L~L~~n~l~-~l~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~L~~n~i~-----~ 968 (1382)
+..+++|+.|++++|.+. ..+..+..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334445555555555443 122222222 225555555554432 112223333 55555555555554 2
Q ss_pred cCccccCCCCCceeccccccccc----cccccccCCcccceeeccCccCc-----cCCcccCCCCCCcEEEccCCCCccc
Q 000630 969 MPESIGILENLVILRLNECKQLE----KLPASMGKLKSLVHLLMEETAVT-----ELPESFGMLSSLMVLKMKKPSVKAR 1039 (1382)
Q Consensus 969 l~~~~~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~l~~n~~~~~ 1039 (1382)
++..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.+...
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 23334445556666666655543 12233344456666666666554 1233444556666666666654321
Q ss_pred Ccchhhcccccccccc-ccCCCCcceecccCcccCC----CCCCccCCCCCCCEeeccCCCCCcC-----chhccCC-cc
Q 000630 1040 NSSAREKQKLTVLPTS-FCNLSSLEELDAQGWRIGG----KIPDDFEKLSSLEILNLGNNNFCNL-----PSSLRGL-SH 1108 (1382)
Q Consensus 1040 ~~~~~~~~~~~~~p~~-l~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~Ls~N~l~~l-----p~~l~~l-~~ 1108 (1382)
. +..+... ....+.|+.|++++|.++. .+...+..+++|+.+++++|.++.- ...+... +.
T Consensus 237 ~--------~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~ 308 (319)
T cd00116 237 G--------AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE 308 (319)
T ss_pred H--------HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCc
Confidence 0 0000000 0123556666666666541 1223344445666666666666522 2223333 45
Q ss_pred cceeeccccc
Q 000630 1109 LKNLLLPYCQ 1118 (1382)
Q Consensus 1109 L~~L~Ls~n~ 1118 (1382)
|++|++.+|+
T Consensus 309 ~~~~~~~~~~ 318 (319)
T cd00116 309 LESLWVKDDS 318 (319)
T ss_pred hhhcccCCCC
Confidence 6666665554
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=1e-15 Score=145.03 Aligned_cols=161 Identities=27% Similarity=0.355 Sum_probs=119.8
Q ss_pred cccEEecCCCcCCCcCCCCCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccC
Q 000630 671 NLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSD 750 (1382)
Q Consensus 671 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~ 750 (1382)
++..|.||+|++....|.+..+.+|+.|++.+|+ +..+|.+++.+++|++|+++-| .+..+|..|+.++-|+.|||..
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccc
Confidence 3333444444433344455566666666666654 3556777788888888888764 3567788888888888888888
Q ss_pred CCCC-CCCcccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCC
Q 000630 751 CSKL-KELPEDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELP 829 (1382)
Q Consensus 751 ~~~~-~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~ 829 (1382)
|+.. ..+|..|..|..|+.|+|+.|.+.-+|..++++++|+.|.+..|. +-.+|..++. +..|++|.+.+|.++.+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~-lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGD-LTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHH-HHHHHHHhcccceeeecC
Confidence 7765 457888888888899999999999899999999999999998877 5567888887 888999999888888888
Q ss_pred hhccCC
Q 000630 830 DSVGHM 835 (1382)
Q Consensus 830 ~~l~~l 835 (1382)
..++++
T Consensus 190 pel~~l 195 (264)
T KOG0617|consen 190 PELANL 195 (264)
T ss_pred hhhhhh
Confidence 766554
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=5.9e-15 Score=172.09 Aligned_cols=254 Identities=19% Similarity=0.192 Sum_probs=118.6
Q ss_pred ccccccEEecCCCcCCCc----CC-CCCCCCcccEEeccCcccc------ccccccccCCCCCceEeccCCCCCccCCcc
Q 000630 668 VAKNLMVLNLRGCWNLAS----IP-DLSEHQKLEKLVLERCCRL------TKIHESVGNLSSLLHLNLRDCRNLIELPSD 736 (1382)
Q Consensus 668 ~l~~L~~L~L~~~~~~~~----~~-~l~~l~~L~~L~L~~~~~~------~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~ 736 (1382)
.+.+|+.|++++|..... ++ .+...++|++|+++++... ..++..+..+++|+.|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344455555555543211 11 1334445555555554332 122334455556666666665554333333
Q ss_pred CCCCC---CCCEEEccCCCCCC----CCccccccc-CCccEEEecCcccc-----ccCccccCCCCCcEEEcCCCCCCCC
Q 000630 737 VSGLK---HLENLILSDCSKLK----ELPEDICSM-RSLKELLVDGTAIE-----KLPQSIFHLVKLEKLNLGKCKSLKQ 803 (1382)
Q Consensus 737 i~~l~---~L~~L~Ls~~~~~~----~~p~~l~~l-~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~ 803 (1382)
+..+. +|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 32222 36666666554432 112233344 55566666555554 2233344445555555555553321
Q ss_pred CChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCc----CCCCcCccccceeeeccCCCCccc----
Q 000630 804 LPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITT----IPDSIGHLKSLIEFLIDGTAVKNL---- 875 (1382)
Q Consensus 804 l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~l---- 875 (1382)
... .++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++..
T Consensus 181 ~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 181 GIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 111 1122223334444444444443321 122233444555555555544321
Q ss_pred -Cccc-CCCcccccccccCccCCC----CCcccccCCCCCcEEecCCCcCccC-----ccccCCc-cccceeeccCCc
Q 000630 876 -PASI-GSLSYLKAFSVGRCQFLS----ELPDSIEGLASLVELQLDGTSIRHL-----PDQIGGL-KMLDKLVMRNCL 941 (1382)
Q Consensus 876 -p~~l-~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~l-----~~~~~~l-~~L~~L~l~~~~ 941 (1382)
...+ ...+.|+.|++++|.+.. .+...+..+++|+.+++++|.+..- ...+... +.|+.|++.+++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0000 123567777777776652 2333455567777888887777632 2223333 577777776654
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=4.1e-11 Score=160.58 Aligned_cols=303 Identities=16% Similarity=0.166 Sum_probs=188.7
Q ss_pred CCccccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHH
Q 000630 176 TPMKVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 176 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
.|+..+..+|-|+.-++.+.+ ....+++.|.|++|.||||++.+++++. +.++|+. +. ....+....
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~---~~d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LD---ESDNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cC---cccCCHHHH
Confidence 355566788888876665532 2357899999999999999999988642 3577885 22 233455556
Q ss_pred HHHHHHHhhCCCCC--CCCC----CCcccchhhcHHHHHHHHc--CCcEEEEEcCCCCh------HHHhhHhcCCCcCCC
Q 000630 256 QNKLIFDLSSGNKV--PTEN----VPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDP------SQLNALCGDKEWFSE 321 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~--~~~~----~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~------~~l~~l~~~~~~~~~ 321 (1382)
...++..+...... +... .....+.......+...+. +.+++|||||+... +.+..++.. ..+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCC
Confidence 56666666421110 0000 0000112222333333333 57899999999553 234444433 256
Q ss_pred CCeEEEEeCCCCccccC---CCccEEEcC----CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 322 GSRIIITTRDRGALPEH---YVNQLYEVQ----KLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 322 gs~IliTTR~~~~~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
+.++|||||........ ......++. +|+.+|+.+||...... . .. .+.+.++.+.++|.|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~---~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P-IE---AAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C-CC---HHHHHHHHHHhCChHHHHHHHH
Confidence 77899999975322110 112345566 89999999999854421 1 11 1557889999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHhcCCchHHHHHHh-hccCCCccccceeeeeecccccCCCCHHHHHHHHhhCCCChhhhHH
Q 000630 395 AFLFDKRRITEWEDALEKLRKIRPNNLQEVLKI-SFDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGCGFRAEIAIV 473 (1382)
Q Consensus 395 ~~L~~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~g~~~~~~l~ 473 (1382)
..+...... .......+.......+.+.+.- .++.||++.++.++..|++. .++.+.+..+... -.+...++
T Consensus 227 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~~~--~~~~~~L~ 299 (903)
T PRK04841 227 LSARQNNSS--LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVTGE--ENGQMRLE 299 (903)
T ss_pred HHHhhCCCc--hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHcCC--CcHHHHHH
Confidence 877543310 0111122221123346665443 47899999999999999974 5666655544432 23577899
Q ss_pred HHhcccceEEe-cC--CeEEccHHHHHHHHHHHhhc
Q 000630 474 VLMKKSLIKIT-ED--DTLWMHDQLRDMGRQIVQQE 506 (1382)
Q Consensus 474 ~L~~~sLi~~~-~~--~~~~mHdll~~~~~~~~~~e 506 (1382)
.|.+.+++... ++ .+|.+|++++++.+.....+
T Consensus 300 ~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 300 ELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99999996533 22 37899999999999887443
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=1.8e-09 Score=129.44 Aligned_cols=290 Identities=17% Similarity=0.121 Sum_probs=168.7
Q ss_pred CccccCcccchhHHHHHHHHHhcCC--CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc--cceeeeeccccccCCCCH
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDVK--SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE--HRSFISNVRETSGQNDGL 252 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~ 252 (1382)
|...|+.++||+.++++|...+... ....+.+.|+|++|+|||++++.++++...... ..+++. .....+.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-----~~~~~~~ 99 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-----CQIDRTR 99 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-----CCcCCCH
Confidence 3346788999999999999988432 233456789999999999999999998765542 223332 2233456
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc--CCcEEEEEcCCCChH------HHhhHhcCCCcCCCCCe
Q 000630 253 VSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDPS------QLNALCGDKEWFSEGSR 324 (1382)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~ 324 (1382)
..+...++.++.... . .....+..+....+.+.+. +++.+||||+++... .+..+...... .++++
T Consensus 100 ~~~~~~i~~~l~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~ 173 (394)
T PRK00411 100 YAIFSEIARQLFGHP-P----PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGAR 173 (394)
T ss_pred HHHHHHHHHHhcCCC-C----CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCe
Confidence 677777877775311 0 1111234445566666664 356899999997642 34444432211 12333
Q ss_pred --EEEEeCCCCccccC-------CCccEEEcCCCCHHHHHHHHHHhhcC---CCCCCchH-HHHHHHHHHHhCCChHHHH
Q 000630 325 --IIITTRDRGALPEH-------YVNQLYEVQKLDSSRALQLFSYHALG---RENPTDKF-FKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 325 --IliTTR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~-~~~~~~i~~~~~g~PLal~ 391 (1382)
+|.++.+..+.... .....+.+++++.++..+++..++-. .....++. ..+++......|..+.|+.
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 66666654332211 11346899999999999999877632 11222222 2223333233466777776
Q ss_pred HHHhhh-----CC--CCCHHHHHHHHHHHHhcCCchHHHHHHhhccCCCccccceeeeeecccc--cCCCCHHHHHHH--
Q 000630 392 VFGAFL-----FD--KRRITEWEDALEKLRKIRPNNLQEVLKISFDGLDQQDKCIFLDIACLFV--KMGMNKEDAIDI-- 460 (1382)
Q Consensus 392 ~~g~~L-----~~--~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--~~~~~~~~l~~~-- 460 (1382)
++-... .+ .-+.++.+.+++... .....-.+..||.++|..+..++.... ...+....+...
T Consensus 254 ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~ 326 (394)
T PRK00411 254 LLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYK 326 (394)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 664321 11 124556666665541 223445678999998887766654431 123444444322
Q ss_pred --HhhCCCC------hhhhHHHHhcccceEEe
Q 000630 461 --LKGCGFR------AEIAIVVLMKKSLIKIT 484 (1382)
Q Consensus 461 --~~~~g~~------~~~~l~~L~~~sLi~~~ 484 (1382)
....|.. ...++..|.+.++|...
T Consensus 327 ~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 327 ELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 2222332 23478888899998854
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=5.6e-10 Score=128.50 Aligned_cols=271 Identities=14% Similarity=0.066 Sum_probs=160.4
Q ss_pred CcccchhHHHHHHHHHhcCC---CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVK---SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
..|||++..+++|..++... ....+.+.++|++|+|||+||+.+++.+...+. +.. .........+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~----~~~~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITS----GPALEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eec----cchhcCchhHH-H
Confidence 35899999999999988631 223456789999999999999999998754321 111 00011111111 1
Q ss_pred HHHHhhCCCCCCCCCCCcccch----hhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCc
Q 000630 259 LIFDLSSGNKVPTENVPTENVV----TANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGA 334 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~ 334 (1382)
.+..+.... .--.++. ....+.+...+.+.+..+|+|+..+..++.... .+.+-|..||+...+
T Consensus 75 ~l~~~~~~~------vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l 142 (305)
T TIGR00635 75 ILTNLEEGD------VLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGML 142 (305)
T ss_pred HHHhcccCC------EEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCcccc
Confidence 122221100 0000000 112344555566667777777766655544322 234556667776544
Q ss_pred cccC--CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHhhhC------CC--CCHH
Q 000630 335 LPEH--YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGAFLF------DK--RRIT 404 (1382)
Q Consensus 335 ~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L~------~~--~~~~ 404 (1382)
.... .....+++++++.+|..+++...+....... ..+.+..|++.|+|.|-.+..++..+. +. .+.+
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~--~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI--EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRD 220 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHH
Confidence 3321 1234689999999999999997774322211 125678899999999976655544321 00 0111
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhccCCCccccceeeee-ecccccCCCCHHHHHHHHhhCCCChhhhHH-HHhcccceE
Q 000630 405 EWEDALEKLRKIRPNNLQEVLKISFDGLDQQDKCIFLDI-ACLFVKMGMNKEDAIDILKGCGFRAEIAIV-VLMKKSLIK 482 (1382)
Q Consensus 405 ~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~-a~f~~~~~~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~ 482 (1382)
..+. ....+...|..+++.++..+..+ +.+. +..+..+.+...+......++..++ .|++++||.
T Consensus 221 ~v~~------------~l~~l~~~~~~l~~~~~~~L~al~~~~~-~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALK------------ALEMLMIDELGLDEIDRKLLSVLIEQFQ-GGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHH------------HHHHhCCCCCCCCHHHHHHHHHHHHHhC-CCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 1111 12224566788888877766533 4443 4567788888888776666777788 699999998
Q ss_pred EecCCe
Q 000630 483 ITEDDT 488 (1382)
Q Consensus 483 ~~~~~~ 488 (1382)
....|+
T Consensus 288 ~~~~g~ 293 (305)
T TIGR00635 288 RTPRGR 293 (305)
T ss_pred cCCchh
Confidence 555544
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.10 E-value=1.8e-08 Score=119.55 Aligned_cols=292 Identities=18% Similarity=0.173 Sum_probs=164.0
Q ss_pred CccccCcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc------cceeeeeccccccC
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE------HRSFISNVRETSGQ 248 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~ 248 (1382)
+...|+.++||+.++++|...|.. .......+.|+|++|+|||++++++++.+..... ..+|+. ...
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-----~~~ 84 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-----CQI 84 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-----CCC
Confidence 344567899999999999999863 1233457899999999999999999997654322 123333 223
Q ss_pred CCCHHHHHHHHHHHhhC-CCCCCCCCCCcccchhhcHHHHHHHHc--CCcEEEEEcCCCChH-----HHhhHhcCCCcC-
Q 000630 249 NDGLVSLQNKLIFDLSS-GNKVPTENVPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDPS-----QLNALCGDKEWF- 319 (1382)
Q Consensus 249 ~~~~~~l~~~ll~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~~-----~l~~l~~~~~~~- 319 (1382)
..+...+...++.++.. +...+ ....+..+....+.+.+. +++++||||+++... .+..+.....+.
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 34556777778777742 11111 111122333445555553 467899999998751 133333221011
Q ss_pred C--CCCeEEEEeCCCCccccC-------CCccEEEcCCCCHHHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHhCCCh
Q 000630 320 S--EGSRIIITTRDRGALPEH-------YVNQLYEVQKLDSSRALQLFSYHAL---GRENPTDKFFKISEQIVSLTGGLP 387 (1382)
Q Consensus 320 ~--~gs~IliTTR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~g~P 387 (1382)
. ....+|.+|......... .....+.+++++.+|..+++..++- ......++..+.+.+++....|.|
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 1 233455555544321111 1134689999999999999988763 112223344455566777777888
Q ss_pred H-HHHHHHhhh----C-C--CCCHHHHHHHHHHHHhcCCchHHHHHHhhccCCCccccceeeeeeccc--ccCCCCHHHH
Q 000630 388 L-ALEVFGAFL----F-D--KRRITEWEDALEKLRKIRPNNLQEVLKISFDGLDQQDKCIFLDIACLF--VKMGMNKEDA 457 (1382)
Q Consensus 388 L-al~~~g~~L----~-~--~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~--~~~~~~~~~l 457 (1382)
- |+.++-... . + .-+.+..+.+.+.+. .....-++..||.++|.++..++... .+..+....+
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~ 313 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEV 313 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 4 333322111 1 1 123455555555442 22334466788888876665554322 2233444444
Q ss_pred HHH----HhhCCCC------hhhhHHHHhcccceEEe
Q 000630 458 IDI----LKGCGFR------AEIAIVVLMKKSLIKIT 484 (1382)
Q Consensus 458 ~~~----~~~~g~~------~~~~l~~L~~~sLi~~~ 484 (1382)
... ....|.. ...++..|...|+|+..
T Consensus 314 ~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 314 YEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 431 1222221 33568888899999865
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=8.4e-11 Score=149.11 Aligned_cols=126 Identities=29% Similarity=0.359 Sum_probs=67.6
Q ss_pred ccccEEecCCCcCCCcCCCCCCCCcccEEeccCcc--ccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEE
Q 000630 670 KNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCC--RLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLI 747 (1382)
Q Consensus 670 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 747 (1382)
...+.+.+.+|. ...++.-..+++|++|-+.+|. .....+..|..++.|++|||++|...+.+|.+|++|-+|++|+
T Consensus 523 ~~~rr~s~~~~~-~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNK-IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccc-hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 444555554442 2233333444466666666654 2222223455666666666666666666666666666666666
Q ss_pred ccCCCCCCCCcccccccCCccEEEecCcccc-ccCccccCCCCCcEEEcCC
Q 000630 748 LSDCSKLKELPEDICSMRSLKELLVDGTAIE-KLPQSIFHLVKLEKLNLGK 797 (1382)
Q Consensus 748 Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~l~~ 797 (1382)
|+++. +..+|..++++..|.+|++..+... .+|.....+++|++|.+..
T Consensus 602 L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66533 3456666666666666666655433 2232233356666665544
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=7e-10 Score=122.84 Aligned_cols=203 Identities=20% Similarity=0.190 Sum_probs=100.7
Q ss_pred ccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHH------HH
Q 000630 184 NVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSL------QN 257 (1382)
Q Consensus 184 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 257 (1382)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+....... ...+... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN--ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH--HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh--hhHHHHHHHHHHHHH
Confidence 799999999999999643 3568899999999999999999998755433455554222100 0001111 11
Q ss_pred HHHHHhhC---CCCCCCCCCCcccchhhcHHHHHHHHcC--CcEEEEEcCCCChH-----------HHhhHhcCCCcCCC
Q 000630 258 KLIFDLSS---GNKVPTENVPTENVVTANIAEIKNVVRE--RKVFVVLDDVDDPS-----------QLNALCGDKEWFSE 321 (1382)
Q Consensus 258 ~ll~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVLDdv~~~~-----------~l~~l~~~~~~~~~ 321 (1382)
.+...+.. .....................+.+.+.. ++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 11111211 0000000001112223334444444433 46999999986544 12222222111 23
Q ss_pred CCeEEEEeCCCCccc--------cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 322 GSRIIITTRDRGALP--------EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 322 gs~IliTTR~~~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
...+|+++....+.. ..+....+.+++|+.+++++++...+-.. ..-+.-.+..++|...+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 334445544322221 12334469999999999999999755332 11111235668999999999998864
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.04 E-value=6.7e-09 Score=124.27 Aligned_cols=304 Identities=18% Similarity=0.205 Sum_probs=193.2
Q ss_pred CccccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHH
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
|+..+...|-|..-+..+.+. .+.|.+.|..++|-|||||+.+++.+ ...-..+.|+.- .....+..+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlsl----de~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSL----DESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeec----CCccCCHHHHH
Confidence 344466778787666555432 36899999999999999999999883 344456778862 33455777888
Q ss_pred HHHHHHhhCCCCCCCC------CCCcccchhhcHHHHHHHHcC--CcEEEEEcCCC---Ch---HHHhhHhcCCCcCCCC
Q 000630 257 NKLIFDLSSGNKVPTE------NVPTENVVTANIAEIKNVVRE--RKVFVVLDDVD---DP---SQLNALCGDKEWFSEG 322 (1382)
Q Consensus 257 ~~ll~~l~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~--~r~LlVLDdv~---~~---~~l~~l~~~~~~~~~g 322 (1382)
..++..+........+ ......+....+..+..-+.+ ++..+||||.. ++ ..++.++... .++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCC
Confidence 8888777632211100 011112223334444444433 68999999973 22 3456665543 578
Q ss_pred CeEEEEeCCCCcccc---CCCccEEEcC----CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 000630 323 SRIIITTRDRGALPE---HYVNQLYEVQ----KLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGA 395 (1382)
Q Consensus 323 s~IliTTR~~~~~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~ 395 (1382)
-..|||||...-... --.+...+++ .|+.+|+-++|..... .+-+ ...++.+.+..+|-+-|+..++=
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld--~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLD--AADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCC--hHHHHHHHhhcccHHHHHHHHHH
Confidence 899999998743321 1122344444 4899999999986541 1111 14578899999999999999998
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCchHHHHH-HhhccCCCccccceeeeeecccccCCCCHHHHHHHHhhCCCChhhhHHH
Q 000630 396 FLFDKRRITEWEDALEKLRKIRPNNLQEVL-KISFDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGCGFRAEIAIVV 474 (1382)
Q Consensus 396 ~L~~~~~~~~w~~~l~~l~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 474 (1382)
.++.+.+.+.-.. .+... .+.+.+-| .--++.||++.|..++.+|++. .+.-+ +...+.+.+ .+...++.
T Consensus 236 a~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~---~f~~e-L~~~Ltg~~-ng~amLe~ 306 (894)
T COG2909 236 ALRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS---RFNDE-LCNALTGEE-NGQAMLEE 306 (894)
T ss_pred HccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH---HhhHH-HHHHHhcCC-cHHHHHHH
Confidence 8884443332211 11111 12233322 3357899999999998888884 34433 444444332 35667899
Q ss_pred HhcccceEEe---cCCeEEccHHHHHHHHHHHhhcC
Q 000630 475 LMKKSLIKIT---EDDTLWMHDQLRDMGRQIVQQES 507 (1382)
Q Consensus 475 L~~~sLi~~~---~~~~~~mHdll~~~~~~~~~~e~ 507 (1382)
|.+++|+-+. +++.|+.|.++.+|-+.....+.
T Consensus 307 L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 307 LERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred HHhCCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9999987643 45689999999999988876543
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=1.2e-09 Score=126.35 Aligned_cols=276 Identities=13% Similarity=0.045 Sum_probs=158.3
Q ss_pred cCcccchhHHHHHHHHHhcC---CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDV---KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
-..|+|++..++.+..++.. .....+.+.++|++|+||||+|+.+++.+...+. +.. ... .... ....
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~-~~~~----~~l~ 94 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA-LEKP----GDLA 94 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc-ccCh----HHHH
Confidence 45799999999999888753 1234567889999999999999999998754321 111 000 1111 1112
Q ss_pred HHHHHhhCCCCCCCCCCCcccch----hhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCC
Q 000630 258 KLIFDLSSGNKVPTENVPTENVV----TANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRG 333 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~ 333 (1382)
.++..+.... .--.++. ....+.+...+.+.+..+|+|+..+..++.... .+.+-|..|||...
T Consensus 95 ~~l~~l~~~~------vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l------~~~~li~at~~~~~ 162 (328)
T PRK00080 95 AILTNLEEGD------VLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL------PPFTLIGATTRAGL 162 (328)
T ss_pred HHHHhcccCC------EEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC------CCceEEeecCCccc
Confidence 2222221100 0000111 112233444455566666666655544333211 23445556666554
Q ss_pred ccccC--CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHhhhCCCCCHHHHHHHHH
Q 000630 334 ALPEH--YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRITEWEDALE 411 (1382)
Q Consensus 334 ~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~~~~~~w~~~l~ 411 (1382)
+.... .....+++++++.++..+++...+....... ..+.+..|++.|+|.|-.+..+...+ ..|.....
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~ 234 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKG 234 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcC
Confidence 43221 1134689999999999999997764332222 22568899999999996554444432 11211100
Q ss_pred HHHhcCCc---hHHHHHHhhccCCCccccceee-eeecccccCCCCHHHHHHHHhhCCCChhhhHH-HHhcccceEEecC
Q 000630 412 KLRKIRPN---NLQEVLKISFDGLDQQDKCIFL-DIACLFVKMGMNKEDAIDILKGCGFRAEIAIV-VLMKKSLIKITED 486 (1382)
Q Consensus 412 ~l~~~~~~---~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~~~~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~ 486 (1382)
-...... .....+...+..|++..+..+. .+..|. +..+..+.+...+.......+..++ .|++.+||+....
T Consensus 235 -~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 235 -DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG-GGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred -CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC-CCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCc
Confidence 0000001 1223355677788888877775 334443 4578888888888766666777788 9999999985555
Q ss_pred C
Q 000630 487 D 487 (1382)
Q Consensus 487 ~ 487 (1382)
|
T Consensus 313 g 313 (328)
T PRK00080 313 G 313 (328)
T ss_pred h
Confidence 4
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.1e-10 Score=121.04 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=83.0
Q ss_pred CCCCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEc
Q 000630 952 SILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKM 1031 (1382)
Q Consensus 952 ~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l 1031 (1382)
....|+.|||++|.|+.+.++..-.|.++.|+++.|.+...-. +..+++|+.|||++|.++++..+-..+-+.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3456778888888888777777777777777777777654322 55566666666666666555444334444444444
Q ss_pred cCCCCcccCcchhhccccccccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCc--hhccCCccc
Q 000630 1032 KKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLP--SSLRGLSHL 1109 (1382)
Q Consensus 1032 ~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L 1109 (1382)
++|.+.. ...+..+-+|..||+++|+|..+. ..+++||.|
T Consensus 360 ------------------------------------a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 360 ------------------------------------AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ------------------------------------hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 4444421 123455667777777777777443 457788888
Q ss_pred ceeecccccCCC
Q 000630 1110 KNLLLPYCQELK 1121 (1382)
Q Consensus 1110 ~~L~Ls~n~~l~ 1121 (1382)
+.|.|.+|++.+
T Consensus 402 E~l~L~~NPl~~ 413 (490)
T KOG1259|consen 402 ETLRLTGNPLAG 413 (490)
T ss_pred HHHhhcCCCccc
Confidence 888888887543
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.1e-10 Score=125.90 Aligned_cols=205 Identities=20% Similarity=0.196 Sum_probs=111.4
Q ss_pred cCCCCCceEeccCCCCCccCC--ccCCCCCCCCEEEccCCCCCC--CCcccccccCCccEEEecCccccccCccc--cCC
Q 000630 714 GNLSSLLHLNLRDCRNLIELP--SDVSGLKHLENLILSDCSKLK--ELPEDICSMRSLKELLVDGTAIEKLPQSI--FHL 787 (1382)
Q Consensus 714 ~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~Ls~~~~~~--~~p~~l~~l~~L~~L~L~~~~i~~lp~~l--~~l 787 (1382)
.++++|+...|.++. .+..+ .....|++++.||||.|-+.. .+-.....+++|+.|+|+.|.+....++. ..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 467888888887754 33333 244567788888888753322 12233456677777777777665332221 134
Q ss_pred CCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeec
Q 000630 788 VKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLI 867 (1382)
Q Consensus 788 ~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 867 (1382)
+.|+.|.++.|.+... .+...+..+|+|+.|.|..|............++.|++|+|
T Consensus 197 ~~lK~L~l~~CGls~k-----------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK-----------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhhheEEeccCCCCHH-----------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 5555555555553321 12222334555555566555433333333444556666666
Q ss_pred cCCCCcccC--cccCCCcccccccccCccCCCC-Cccc-----ccCCCCCcEEecCCCcCccCcc--ccCCccccceeec
Q 000630 868 DGTAVKNLP--ASIGSLSYLKAFSVGRCQFLSE-LPDS-----IEGLASLVELQLDGTSIRHLPD--QIGGLKMLDKLVM 937 (1382)
Q Consensus 868 ~~n~~~~lp--~~l~~l~~L~~L~L~~~~~~~~-~~~~-----l~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l 937 (1382)
++|.+-.++ ...+.++.|..|+++.|.+... .|+. ...+++|+.|+++.|++..++. .+..+++|+.|.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 666665555 2455666777777766665542 2222 3456777777777777755442 2333444555544
Q ss_pred cCCcc
Q 000630 938 RNCLS 942 (1382)
Q Consensus 938 ~~~~~ 942 (1382)
..|.+
T Consensus 334 ~~n~l 338 (505)
T KOG3207|consen 334 TLNYL 338 (505)
T ss_pred ccccc
Confidence 44443
No 39
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.91 E-value=6.3e-09 Score=113.73 Aligned_cols=143 Identities=25% Similarity=0.381 Sum_probs=105.8
Q ss_pred CCCcccEEEccccccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCCcccC-------
Q 000630 11 FRLRWDVFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPNYGSS------- 83 (1382)
Q Consensus 11 ~~~~~dvfis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s------- 83 (1382)
...+.|||||||+.- -...|+-+.-.|+-+||+||+|-+.+..|+ +...+.+.|+.++.+|.|+||+.+..
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 357899999998764 468999999999999999999999999997 66799999999999999999998764
Q ss_pred -hhhHHHHHHHHHcCCeEEEEEecCCCccccccccchHHHHHHHhhhcCchhHHHHHHHHHHHhcccccccCCchHHHHH
Q 000630 84 -RWCLEELAKICELNRLILPVFYKVDPSDVRRQQGPFKQDFERHQDRFGEDTVSQWRKAMMKVGGISGWVFNNSEEEQLV 162 (1382)
Q Consensus 84 -~w~~~e~~~~~~~~~~~ipv~~~v~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~e~~~i 162 (1382)
.|.-.|+..+++|.+.|||||... | . | .++....-.-+..+...+|.......+...+
T Consensus 687 eDWVHKEl~~Afe~~KNIiPI~D~a-----------F----E-----~-Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~m 745 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKNIIPIFDTA-----------F----E-----F-PTKEDQIPNDIRMITKYNGVKWVHDYQDACM 745 (832)
T ss_pred HHHHHHHHHHHHHhcCCeeeeeccc-----------c----c-----C-CCchhcCcHHHHHHHhccCeeeehhhHHHHH
Confidence 799999999999999999997321 1 0 0 0000011112223445566655555566667
Q ss_pred HHHHHHHHHhhcCC
Q 000630 163 QLLVKRVLAELSNT 176 (1382)
Q Consensus 163 ~~i~~~v~~~l~~~ 176 (1382)
+++|.-+..+++.+
T Consensus 746 aKvvRFitGe~nRt 759 (832)
T KOG3678|consen 746 AKVVRFITGELNRT 759 (832)
T ss_pred HHHHHHHhccccCC
Confidence 77777666666543
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=9e-11 Score=132.53 Aligned_cols=177 Identities=28% Similarity=0.498 Sum_probs=84.1
Q ss_pred CCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCCCceeccccc
Q 000630 908 SLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNEC 987 (1382)
Q Consensus 908 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n 987 (1382)
--...+++.|++..+|..+..|..|+.+.+..|.+ ..+|..+.++..|..|+|+.|+++.+|..++.|+ |+.|.+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 33455666666666666555555555555554432 2334445555555555555555555555444332 444444443
Q ss_pred cccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecc
Q 000630 988 KQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDA 1067 (1382)
Q Consensus 988 ~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~L 1067 (1382)
++ +.+|..++.++.|..|+.+.|.+..+|..++.+.+|+.|++..|.+ ..+|..+..| .|..||+
T Consensus 154 kl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-------------~~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 154 KL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-------------EDLPEELCSL-PLIRLDF 218 (722)
T ss_pred cc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-------------hhCCHHHhCC-ceeeeec
Confidence 32 2334444444444444444444444454444455555444444422 2233333322 2444444
Q ss_pred cCcccCCCCCCccCCCCCCCEeeccCCCCCcCchh
Q 000630 1068 QGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSS 1102 (1382)
Q Consensus 1068 s~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~~ 1102 (1382)
|.|+++ .+|-.|..|+.|++|.|.+|.+++-|..
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 444442 3444445555555555555555544433
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=2.2e-09 Score=128.72 Aligned_cols=179 Identities=29% Similarity=0.460 Sum_probs=99.0
Q ss_pred CCCCCCCEEEccCCCCCCCCcccccccC-CccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhccccc
Q 000630 738 SGLKHLENLILSDCSKLKELPEDICSMR-SLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALK 816 (1382)
Q Consensus 738 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~-~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~ 816 (1382)
..++.++.|++.++. ...++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|+ +..+|..... ++.|+
T Consensus 113 ~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~-~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN-LSNLN 189 (394)
T ss_pred hcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh-hhhhh
Confidence 344556666665533 334444444443 6666666666666665556666666666666655 3344443322 56666
Q ss_pred ccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCC
Q 000630 817 ELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFL 896 (1382)
Q Consensus 817 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~ 896 (1382)
.|++++|.+..+|........|++|.+++|... ..+..+.++.++..+.+.+|.+..++..++.+++++.|++++|.+.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 666666666666665545555666666665421 2233455555555555556655555555555555666666655544
Q ss_pred CCCcccccCCCCCcEEecCCCcCccC
Q 000630 897 SELPDSIEGLASLVELQLDGTSIRHL 922 (1382)
Q Consensus 897 ~~~~~~l~~l~~L~~L~L~~n~l~~l 922 (1382)
.... +..+.+|+.|+++++.+..+
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc--ccccCccCEEeccCcccccc
Confidence 4332 55555666666666555533
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.4e-10 Score=124.33 Aligned_cols=206 Identities=21% Similarity=0.246 Sum_probs=100.7
Q ss_pred cccCCccEEEecCccccccCc--cccCCCCCcEEEcCCCCCCCCCC-hhhhhhcccccccccccccCccCChhc--cCCC
Q 000630 762 CSMRSLKELLVDGTAIEKLPQ--SIFHLVKLEKLNLGKCKSLKQLP-NCIGTQLIALKELSFNYSAVEELPDSV--GHMG 836 (1382)
Q Consensus 762 ~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~l~~~~~~~~l~-~~~~~~l~~L~~L~l~~n~l~~l~~~l--~~l~ 836 (1382)
.++++|+...|+++.+...+. ....|++++.|||+.|-+..-.+ ..+..++++|+.|+++.|.+...-++. ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466778888888887776553 45567777777777764333222 112333566666666665554222111 1234
Q ss_pred CCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccccCCCCCcEEecCC
Q 000630 837 NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDG 916 (1382)
Q Consensus 837 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 916 (1382)
+|+.|.|+.|.++- ..+...+..+|+|+.|++..|.....-......+..|++|+|++
T Consensus 198 ~lK~L~l~~CGls~----------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW----------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCCH----------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 44444444444321 11222233455555555555542222222233345556666666
Q ss_pred CcCccCc--cccCCccccceeeccCCccCCc-cccc-----ccCCCCCCEEEcccccCcccCc--cccCCCCCceecccc
Q 000630 917 TSIRHLP--DQIGGLKMLDKLVMRNCLSLKT-LPDS-----IGSILTLTTLNIVNASITRMPE--SIGILENLVILRLNE 986 (1382)
Q Consensus 917 n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~ 986 (1382)
|++...+ ...+.++.|+.|+++.|.+... .|+. ...+++|++|++..|++..+++ .+..+++|+.|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 6555444 2344455555555555544332 1111 2345556666666666554443 233344444444444
Q ss_pred ccc
Q 000630 987 CKQ 989 (1382)
Q Consensus 987 n~~ 989 (1382)
|.+
T Consensus 336 n~l 338 (505)
T KOG3207|consen 336 NYL 338 (505)
T ss_pred ccc
Confidence 443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=3.9e-10 Score=117.07 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=96.0
Q ss_pred CCCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCC
Q 000630 897 SELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGIL 976 (1382)
Q Consensus 897 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l 976 (1382)
|.....+..+..|++|+|++|.|+.+..++.-.|.++.|+++.|.+...- .+..+++|+.|||++|.++++..+-..+
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred CceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhh
Confidence 34444555677899999999999999998888999999999999876553 3777888999999999888888777778
Q ss_pred CCCceeccccccccccccccccCCcccceeeccCccCccCC--cccCCCCCCcEEEccCCC
Q 000630 977 ENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELP--ESFGMLSSLMVLKMKKPS 1035 (1382)
Q Consensus 977 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~ 1035 (1382)
.|++.|.|++|.+-. -+++..+-+|..||+.+|+|..+. ..++++|-|+.+.+.+|+
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 888888888877532 134555666666777777665433 234444444444444443
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.87 E-value=1.1e-07 Score=107.55 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=103.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
..+++|+|++|+||||+++.+++.....-...+++. ....+..++...++..++.. ..............
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~------~~~~~~~~~l~~i~~~lG~~----~~~~~~~~~~~~l~ 112 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV------NTRVDAEDLLRMVAADFGLE----TEGRDKAALLRELE 112 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee------CCCCCHHHHHHHHHHHcCCC----CCCCCHHHHHHHHH
Confidence 457899999999999999999987653211112222 12234556666666655321 11011111111112
Q ss_pred HHHHHH-HcCCcEEEEEcCCCChH--HHhhHh---cCCCcCCCCCeEEEEeCCCCcccc----------CCCccEEEcCC
Q 000630 285 AEIKNV-VRERKVFVVLDDVDDPS--QLNALC---GDKEWFSEGSRIIITTRDRGALPE----------HYVNQLYEVQK 348 (1382)
Q Consensus 285 ~~l~~~-l~~~r~LlVLDdv~~~~--~l~~l~---~~~~~~~~gs~IliTTR~~~~~~~----------~~~~~~~~l~~ 348 (1382)
..+... ..+++.++|+||++... .++.+. ...........|++|.... +... ......+++++
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 222222 25688999999998743 333332 2211112233455555422 1100 01234688999
Q ss_pred CCHHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000630 349 LDSSRALQLFSYHALGRE--NPTDKFFKISEQIVSLTGGLPLALEVFGAFL 397 (1382)
Q Consensus 349 L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L 397 (1382)
++.+|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999986653211 1111123678899999999999999988776
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=3.9e-09 Score=126.64 Aligned_cols=168 Identities=27% Similarity=0.445 Sum_probs=77.6
Q ss_pred EEEccCCCCCCCCcccccccCCccEEEecCccccccCccccCCC-CCcEEEcCCCCCCCCCChhhhhhcccccccccccc
Q 000630 745 NLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQSIFHLV-KLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYS 823 (1382)
Q Consensus 745 ~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~-~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n 823 (1382)
.|+++.+..... +..+..++.++.|++.+|.+..+|.....+. +|+.|++++|. ...+|..+.. +++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~-l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRN-LPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhc-cccccccccCCc
Confidence 455555443222 2233344566777777777766666555553 55555555554 2233222222 444444444444
Q ss_pred cCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCccCCCCCcccc
Q 000630 824 AVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSI 903 (1382)
Q Consensus 824 ~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l 903 (1382)
.+..+|...+ .++.|+.|++++|.+..+|..+..+..|+.|.+++|... ..+..+
T Consensus 174 ~l~~l~~~~~------------------------~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~ 228 (394)
T COG4886 174 DLSDLPKLLS------------------------NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSL 228 (394)
T ss_pred hhhhhhhhhh------------------------hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhh
Confidence 4444444333 444555555555555555544444444555555555311 122233
Q ss_pred cCCCCCcEEecCCCcCccCccccCCccccceeeccCC
Q 000630 904 EGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNC 940 (1382)
Q Consensus 904 ~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~ 940 (1382)
..+.++..|.+.+|.+..++..++.+++++.|++++|
T Consensus 229 ~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhcccccccccCCceeeeccchhccccccceeccccc
Confidence 4444444444444444433333333333333333333
No 46
>PF05729 NACHT: NACHT domain
Probab=98.85 E-value=1.4e-08 Score=105.45 Aligned_cols=141 Identities=22% Similarity=0.317 Sum_probs=84.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccc-----cceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccch
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFE-----HRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVV 280 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 280 (1382)
|++.|+|.+|+||||+++.++.++..... ...++...+... .......+...+....... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~----------~~~~ 69 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDIS-DSNNSRSLADLLFDQLPES----------IAPI 69 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhh-hccccchHHHHHHHhhccc----------hhhh
Confidence 58899999999999999999998765532 223333333321 1111123333333332211 1111
Q ss_pred hhcHHHHHHH-HcCCcEEEEEcCCCChHH-------------HhhHhcCCCcCCCCCeEEEEeCCCCc---cccCCCccE
Q 000630 281 TANIAEIKNV-VRERKVFVVLDDVDDPSQ-------------LNALCGDKEWFSEGSRIIITTRDRGA---LPEHYVNQL 343 (1382)
Q Consensus 281 ~~~~~~l~~~-l~~~r~LlVLDdv~~~~~-------------l~~l~~~~~~~~~gs~IliTTR~~~~---~~~~~~~~~ 343 (1382)
.. .+... ...++++||||++|+... +..+... ...++.++|||+|.... .........
T Consensus 70 ~~---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~ 144 (166)
T PF05729_consen 70 EE---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQI 144 (166)
T ss_pred HH---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcE
Confidence 11 12222 256899999999976432 2233322 12578999999998765 222333468
Q ss_pred EEcCCCCHHHHHHHHHHhh
Q 000630 344 YEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 344 ~~l~~L~~~ea~~Lf~~~a 362 (1382)
+++++|++++..+++.++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 9999999999999997543
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=2.1e-10 Score=122.84 Aligned_cols=247 Identities=17% Similarity=0.261 Sum_probs=141.8
Q ss_pred CcCccccceeeeccCCCCc-----ccCcccCCCcccccccccCcc---CCCCCcc-------cccCCCCCcEEecCCCcC
Q 000630 855 SIGHLKSLIEFLIDGTAVK-----NLPASIGSLSYLKAFSVGRCQ---FLSELPD-------SIEGLASLVELQLDGTSI 919 (1382)
Q Consensus 855 ~l~~l~~L~~L~l~~n~~~-----~lp~~l~~l~~L~~L~L~~~~---~~~~~~~-------~l~~l~~L~~L~L~~n~l 919 (1382)
.+....+++.++++||.++ .+...+.+.++|+..++++-- ....+|. .+..++.|+.|+||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3456678888888888875 233445556677776666431 1112332 345566777777777776
Q ss_pred c--c---CccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCCCceeccccccccc---
Q 000630 920 R--H---LPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLE--- 991 (1382)
Q Consensus 920 ~--~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~--- 991 (1382)
. . +...+.++..|+.|+|.||.+...-...++. .|..|. ...-.+.-+.|+++....|.+-.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HHhccCCCcceEEEEeeccccccccH
Confidence 5 1 1233455666777777776544321111000 000000 01112333445555555444322
Q ss_pred -cccccccCCcccceeeccCccCc-----cCCcccCCCCCCcEEEccCCCCcccCcchhhccccccccccccCCCCccee
Q 000630 992 -KLPASMGKLKSLVHLLMEETAVT-----ELPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEEL 1065 (1382)
Q Consensus 992 -~~p~~l~~l~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L 1065 (1382)
.+...+...+.|+.+.++.|.|. .+...+..+++|++|||..|-++.. ....+...++.+++|+.|
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--------gs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--------GSVALAKALSSWPHLREL 246 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--------HHHHHHHHhcccchheee
Confidence 12234455566666666666654 1234566777777777777755432 222344556777788888
Q ss_pred cccCcccCCCCCCcc-----CCCCCCCEeeccCCCCC-----cCchhccCCcccceeecccccC
Q 000630 1066 DAQGWRIGGKIPDDF-----EKLSSLEILNLGNNNFC-----NLPSSLRGLSHLKNLLLPYCQE 1119 (1382)
Q Consensus 1066 ~Ls~n~i~~~~~~~l-----~~l~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~Ls~n~~ 1119 (1382)
++++|.+......++ ...|+|+.|.|.+|.++ .+..++...+.|..|+|++|.+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888775443332 24688999999999887 2344566788899999999985
No 48
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.83 E-value=4.4e-10 Score=130.11 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=85.0
Q ss_pred ccCCceeEeccCCceeeeeE-EEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCC-eeEEee
Q 000630 1217 FSPDMVRFTERRNHKIEGVI-IGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDEC-QVYLCR 1294 (1382)
Q Consensus 1217 f~~~~~~~~~~~~~~~~g~~-~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~-~llv~~ 1294 (1382)
|+...+......+.+|+|.+ .+.+||||++...+.+. ..+|..|+..+++++|+|+|+|.|||.+.+. ++||||
T Consensus 77 Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYE 152 (361)
T KOG1187|consen 77 FSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYE 152 (361)
T ss_pred CchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEE
Confidence 55444555556788999999 45899999874422110 3579999999999999999999999999885 999999
Q ss_pred cCCCcchhhcccCCcEEEEEEecC-----CCcCCeEEEEeeeE
Q 000630 1295 FPGFRPLVSMLKDGYTIQVTTRNP-----PFLKGIVMKKCGIY 1332 (1382)
Q Consensus 1295 ~~~~g~l~~~L~~~~~~~v~~~~~-----~~~~~~~v~~cg~~ 1332 (1382)
||+||||.++||+...-.+.|..+ +.++|+++.+-++.
T Consensus 153 ym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~ 195 (361)
T KOG1187|consen 153 YMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCP 195 (361)
T ss_pred ccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999865325566543 34555666665554
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=4.2e-10 Score=120.53 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred cccCCccEEEecCcccc-----ccCccccCCCCCcEEEcCC
Q 000630 762 CSMRSLKELLVDGTAIE-----KLPQSIFHLVKLEKLNLGK 797 (1382)
Q Consensus 762 ~~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~l~~ 797 (1382)
..+..++.++++||.+. .+...+.+.++|+..++++
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 34455666666666554 2334445556666666654
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=3e-10 Score=128.40 Aligned_cols=154 Identities=31% Similarity=0.460 Sum_probs=106.2
Q ss_pred CCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCcc
Q 000630 689 LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLK 768 (1382)
Q Consensus 689 l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~ 768 (1382)
+..|..|+.|.|..|. .-.+|..++++..|.+|||+.|. +..+|..++.|+ |+.|.+++ +.++.+|+.++.+..|.
T Consensus 94 ~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHH
Confidence 4444445555555443 34567778888888888888864 456677777664 78888876 45677788888778888
Q ss_pred EEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCC
Q 000630 769 ELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGS 848 (1382)
Q Consensus 769 ~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~ 848 (1382)
+|+.+.|.+.++|+.++.+.+|+.|++..|. +..+|..+. .-.|..||++.|++..+|-.|.+++.|++|.|.+|.+
T Consensus 170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 8888888888888888877778777777776 444555554 2346667777777777777777777777777766654
Q ss_pred C
Q 000630 849 I 849 (1382)
Q Consensus 849 ~ 849 (1382)
.
T Consensus 247 q 247 (722)
T KOG0532|consen 247 Q 247 (722)
T ss_pred C
Confidence 3
No 51
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=9.8e-08 Score=122.22 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=179.2
Q ss_pred cccchhHHHHHHHHHhcCC-CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCC---CCHHHHHHH
Q 000630 183 YNVGLDFRIKEVIRLLDVK-SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQN---DGLVSLQNK 258 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~l~~~ 258 (1382)
.++||+.+++.|...+... .....++.|.|..|||||+|+++|...+.+++ ..|+...-+..... ..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 3799999999999988753 33567999999999999999999999766541 11111000000001 112222222
Q ss_pred HHHHh-------------------hCCCCCCC-----------CCCCccc----chh-----hcHHHHHHHHc-CCcEEE
Q 000630 259 LIFDL-------------------SSGNKVPT-----------ENVPTEN----VVT-----ANIAEIKNVVR-ERKVFV 298 (1382)
Q Consensus 259 ll~~l-------------------~~~~~~~~-----------~~~~~~~----~~~-----~~~~~l~~~l~-~~r~Ll 298 (1382)
+..++ +....... .+.+... ... .....+..... .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22222 11100000 0000000 000 11222333333 469999
Q ss_pred EEcCC-CChH----HHhhHhcCCC--cC-CCCCeEEEEeCCC--CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 000630 299 VLDDV-DDPS----QLNALCGDKE--WF-SEGSRIIITTRDR--GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENP 368 (1382)
Q Consensus 299 VLDdv-~~~~----~l~~l~~~~~--~~-~~gs~IliTTR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 368 (1382)
|+||+ |-.. -++.++.... .+ ....-.+.|.+.. .+.........+.+.+|+..+...+...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 4321 2333332221 00 0011122222222 111222344689999999999999998655332222
Q ss_pred CchHHHHHHHHHHHhCCChHHHHHHHhhhCCC------CCHHHHHHHHHHHHhcCC-chHHHHHHhhccCCCccccceee
Q 000630 369 TDKFFKISEQIVSLTGGLPLALEVFGAFLFDK------RRITEWEDALEKLRKIRP-NNLQEVLKISFDGLDQQDKCIFL 441 (1382)
Q Consensus 369 ~~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~------~~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl 441 (1382)
..+..+.|+++.+|+|+-+..+-..+... .+...|..-...+..... +.+.+.+..-.+.||+..|++.-
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23678899999999999999999988763 334556655544433221 22445688889999999999999
Q ss_pred eeecccccCCCCHHHHHHHHhhCCCChhhhHHHHhcccceEEec--------CC---eEEccHHHHHHHHHHHh
Q 000630 442 DIACLFVKMGMNKEDAIDILKGCGFRAEIAIVVLMKKSLIKITE--------DD---TLWMHDQLRDMGRQIVQ 504 (1382)
Q Consensus 442 ~~a~f~~~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~--------~~---~~~mHdll~~~~~~~~~ 504 (1382)
..||+. ..|+.+.+..++...+......+......++|...+ .. +-..||.+|+.+.....
T Consensus 316 ~AA~iG--~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 316 AAACIG--NRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHHHhC--ccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 999998 889999998888754433223333333344444321 11 12578888888766543
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=4.1e-07 Score=98.99 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=91.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
.+.+.|+|.+|+|||+||+++++....+...+.|+. .... ....
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-----~~~~---~~~~---------------------------- 82 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-----LSKS---QYFS---------------------------- 82 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-----HHHh---hhhh----------------------------
Confidence 467889999999999999999998766655566665 1100 0000
Q ss_pred HHHHHHHcCCcEEEEEcCCCCh---HHHh-hHhcCCCcC-CCCCeEEEEeCCC----------CccccCCCccEEEcCCC
Q 000630 285 AEIKNVVRERKVFVVLDDVDDP---SQLN-ALCGDKEWF-SEGSRIIITTRDR----------GALPEHYVNQLYEVQKL 349 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~---~~l~-~l~~~~~~~-~~gs~IliTTR~~----------~~~~~~~~~~~~~l~~L 349 (1382)
..+.+.++ +.-+|||||++.. .+|+ .+...+... ..|..+||+|.+. ++...+.....++++++
T Consensus 83 ~~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 83 PAVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCC
Confidence 01111111 2348999999763 2332 222111111 2455665555433 33334444568999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 000630 350 DSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGA 395 (1382)
Q Consensus 350 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~ 395 (1382)
+.++.++++.+.+....-..+ .+..+-|++++.|..-++..+-.
T Consensus 162 d~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999988864432222 25677788888777665554433
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.2e-08 Score=101.81 Aligned_cols=64 Identities=27% Similarity=0.285 Sum_probs=16.9
Q ss_pred cCCCCCCEEEcccccCcccCccc-cCCCCCceecccccccccc-ccccccCCcccceeeccCccCc
Q 000630 951 GSILTLTTLNIVNASITRMPESI-GILENLVILRLNECKQLEK-LPASMGKLKSLVHLLMEETAVT 1014 (1382)
Q Consensus 951 ~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~ 1014 (1382)
..++.|+.|++++|.|+.+...+ ..+++|+.|++++|++... .-..+..+++|+.|++.+|.++
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ---TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 33444555555555555443322 2344444444444444321 1122334444444444444444
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=1.6e-08 Score=102.74 Aligned_cols=136 Identities=23% Similarity=0.276 Sum_probs=37.2
Q ss_pred CCCCCCCCCcccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCCcccEEeccCccccccccccc-
Q 000630 635 MKTLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESV- 713 (1382)
Q Consensus 635 l~~lp~~~~~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i- 713 (1382)
++..|...++.++++|+|++|.|+.+.. -...+.+|+.|+|++|.+ +.++.+..+++|++|++++|.+... ...+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~ 84 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRISSI-SEGLD 84 (175)
T ss_dssp ---------------------------S----TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S--CHHHH
T ss_pred cccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCCcc-ccchH
Confidence 3445555566677888888888777632 112456677777777633 3344555556666666665544332 1112
Q ss_pred cCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecCccccccCc----cccCCCC
Q 000630 714 GNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQ----SIFHLVK 789 (1382)
Q Consensus 714 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp~----~l~~l~~ 789 (1382)
..+++|+.|+|++|.+.. + ..+ ..+..+++|++|++.+|++..-+. -+..+++
T Consensus 85 ~~lp~L~~L~L~~N~I~~-l---------------------~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~ 141 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISD-L---------------------NEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS 141 (175)
T ss_dssp HH-TT--EEE-TTS---S-C---------------------CCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT
T ss_pred HhCCcCCEEECcCCcCCC-h---------------------HHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh
Confidence 234555555555443211 0 111 234556677777777777664432 2445777
Q ss_pred CcEEEcCC
Q 000630 790 LEKLNLGK 797 (1382)
Q Consensus 790 L~~L~l~~ 797 (1382)
|+.||-..
T Consensus 142 Lk~LD~~~ 149 (175)
T PF14580_consen 142 LKVLDGQD 149 (175)
T ss_dssp -SEETTEE
T ss_pred hheeCCEE
Confidence 77776543
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=4.9e-07 Score=99.76 Aligned_cols=167 Identities=25% Similarity=0.310 Sum_probs=102.7
Q ss_pred cccchhHHH---HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHH
Q 000630 183 YNVGLDFRI---KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 183 ~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
.+||-+.-+ .-|.+++. .+.+...-+||++|+||||||+.++......|... ..-..++.++...+
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkdlr~i~ 93 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKDLREII 93 (436)
T ss_pred HhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHHHHHHH
Confidence 355555444 23445553 24566667999999999999999999776655422 11123344333222
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHH-HHHHcCCcEEEEEcCCC--ChHHHhhHhcCCCcCCCCCeEEE--EeCCCCc
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEI-KNVVRERKVFVVLDDVD--DPSQLNALCGDKEWFSEGSRIII--TTRDRGA 334 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVLDdv~--~~~~l~~l~~~~~~~~~gs~Ili--TTR~~~~ 334 (1382)
+.. +....+++.+|.+|.|. +..|-+.|++.. ..|.-|+| ||.++..
T Consensus 94 -------------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF 145 (436)
T COG2256 94 -------------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSF 145 (436)
T ss_pred -------------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCe
Confidence 222 22335789999999995 456777787764 57777777 6666642
Q ss_pred cc---cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHHhCCChH
Q 000630 335 LP---EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTD-----KFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 335 ~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~~~~~i~~~~~g~PL 388 (1382)
.- ......++++++|+.+|-.+++.+-+......-. -..+..+.+++.++|---
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 11 1134679999999999999999863322111111 112455678888888654
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=2.3e-08 Score=111.07 Aligned_cols=280 Identities=20% Similarity=0.204 Sum_probs=177.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTAN 283 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 283 (1382)
..|.+.++|.|||||||++-.+.. ++..|...+|+.+... .+++ ..+...+...+.... .+ -+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~p-itD~---~~v~~~~ag~~gl~~------~~----g~~~ 77 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAP-ITDP---ALVFPTLAGALGLHV------QP----GDSA 77 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeeccc-cCch---hHhHHHHHhhccccc------cc----chHH
Confidence 468899999999999999999999 8888999988876655 3332 222222333232110 11 1123
Q ss_pred HHHHHHHHcCCcEEEEEcCCCChH-HHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEcCCCCHH-HHHHHHHHh
Q 000630 284 IAEIKNVVRERKVFVVLDDVDDPS-QLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEVQKLDSS-RALQLFSYH 361 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDdv~~~~-~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~ 361 (1382)
...+.....++|.++|+||..+.. +...+...+....+.-.|+.|+|..... .....+.++.|+.. ++.++|...
T Consensus 78 ~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 78 VDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred HHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHH
Confidence 345566677899999999987743 3333332222224566789999976432 24567888888776 799999877
Q ss_pred hcCCCC---CCchHHHHHHHHHHHhCCChHHHHHHHhhhCCCCCHHHHHHH----HHHHHhc------CCchHHHHHHhh
Q 000630 362 ALGREN---PTDKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRITEWEDA----LEKLRKI------RPNNLQEVLKIS 428 (1382)
Q Consensus 362 a~~~~~---~~~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~~~~~~w~~~----l~~l~~~------~~~~i~~~l~~s 428 (1382)
+-.... -.........+|.+...|.|+++..+++..+.-. ..+-... ...+... ........+.+|
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 632211 1123336678899999999999999999887643 2222222 2222222 123456678999
Q ss_pred ccCCCccccceeeeeecccccCCCCHHHHHHHHhhC-----CCChhhhHHHHhcccceEEecC---CeEEccHHHHHHHH
Q 000630 429 FDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGC-----GFRAEIAIVVLMKKSLIKITED---DTLWMHDQLRDMGR 500 (1382)
Q Consensus 429 y~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~-----g~~~~~~l~~L~~~sLi~~~~~---~~~~mHdll~~~~~ 500 (1382)
|.-|..-++-.|-.++.|. .+|+.+.....-.+. .+.....+..+++++++..... -.|+.-+-.+.|+.
T Consensus 234 ~~lLtgwe~~~~~rLa~~~--g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 234 YALLTGWERALFGRLAVFV--GGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred hHhhhhHHHHHhcchhhhh--hhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998 666666332222111 1224456778889998874321 23555555566665
Q ss_pred HHHh
Q 000630 501 QIVQ 504 (1382)
Q Consensus 501 ~~~~ 504 (1382)
+...
T Consensus 312 aeL~ 315 (414)
T COG3903 312 AELH 315 (414)
T ss_pred HHHH
Confidence 5544
No 57
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=1.6e-06 Score=104.90 Aligned_cols=209 Identities=14% Similarity=0.103 Sum_probs=114.7
Q ss_pred CccccCcccchhHHHHHHHHHhcC---CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc-----cc-c-ceeeeeccccc
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDV---KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-----FE-H-RSFISNVRETS 246 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~-~-~~~~~~~~~~~ 246 (1382)
+..+|+.+.|||.++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ . .+++. .
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-----C 824 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-----G 824 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-----C
Confidence 345568899999999999988864 22334577899999999999999999876432 11 1 22332 2
Q ss_pred cCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc---CCcEEEEEcCCCChH--HHhhHhcCCCcC-C
Q 000630 247 GQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR---ERKVFVVLDDVDDPS--QLNALCGDKEWF-S 320 (1382)
Q Consensus 247 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~r~LlVLDdv~~~~--~l~~l~~~~~~~-~ 320 (1382)
..-.....+...+..++.... .+......+....+...+. ....+||||+|+... +-+.|...+.|. .
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~------P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKK------PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK 898 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCC------CCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc
Confidence 222345566666766664321 1112222233444444332 234689999997532 111122111121 2
Q ss_pred CCCeEEE--EeCCC--------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCC-CCCc-hHHHHHHHHHHHhCCChH
Q 000630 321 EGSRIII--TTRDR--------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRE-NPTD-KFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 321 ~gs~Ili--TTR~~--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~-~~~~~~~~i~~~~~g~PL 388 (1382)
.+++|+| +|.+. .+...+. ...+..++++.+|..+++..++-... ...+ ...-+|+.++...|..=.
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARK 977 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRK 977 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHH
Confidence 4555554 33221 1212222 23467799999999999998875321 1122 233333434434455556
Q ss_pred HHHHHHhhh
Q 000630 389 ALEVFGAFL 397 (1382)
Q Consensus 389 al~~~g~~L 397 (1382)
||.++-...
T Consensus 978 ALDILRrAg 986 (1164)
T PTZ00112 978 ALQICRKAF 986 (1164)
T ss_pred HHHHHHHHH
Confidence 666554443
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=2.4e-07 Score=116.04 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred ccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCcccccccCCccEEEecC
Q 000630 695 LEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDG 774 (1382)
Q Consensus 695 L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~L~~ 774 (1382)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555556666666666666666666666566666666666666666666666666666666666666666666
Q ss_pred cccc-ccCccccCC-CCCcEEEcCCCC
Q 000630 775 TAIE-KLPQSIFHL-VKLEKLNLGKCK 799 (1382)
Q Consensus 775 ~~i~-~lp~~l~~l-~~L~~L~l~~~~ 799 (1382)
|.+. .+|..+..+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6555 455544432 344455555554
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=2.8e-07 Score=115.41 Aligned_cols=69 Identities=33% Similarity=0.521 Sum_probs=32.6
Q ss_pred ccccccCCCCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCC-cCchhccCC-cccceeecccccCC
Q 000630 1052 LPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSLRGL-SHLKNLLLPYCQEL 1120 (1382)
Q Consensus 1052 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~lp~~l~~l-~~L~~L~Ls~n~~l 1120 (1382)
+|..++++++|+.|+|++|++++.+|..+..+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+
T Consensus 458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 3444444444444555555555555555555555555555555554 444444332 23344444444433
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.40 E-value=2.7e-06 Score=101.53 Aligned_cols=174 Identities=20% Similarity=0.268 Sum_probs=103.8
Q ss_pred CcccchhHHHHH---HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKE---VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
+.+||.+..+.. +.+++.. .....+.++|++|+||||+|+.+++.....|.. +. . ...+...+ +.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-----a-~~~~~~~i-r~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-----A-VTSGVKDL-RE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-----c-ccccHHHH-HH
Confidence 468999888766 7777753 345677899999999999999999976544321 11 0 01111111 11
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEE--eCCCC
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIIT--TRDRG 333 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliT--TR~~~ 333 (1382)
++.. ... ...+++.+|++|+++.. .+.+.++... ..|..++|. |.+..
T Consensus 80 ii~~------------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~ 132 (413)
T PRK13342 80 VIEE------------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPS 132 (413)
T ss_pred HHHH------------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChh
Confidence 1111 111 11357789999999864 4555555443 245555553 33331
Q ss_pred --cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCChHHHHHHH
Q 000630 334 --ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPT-DKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 334 --~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
+... ......+++++++.++..+++...+....... .-..+..+.+++.++|.|..+..+.
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1111 12246899999999999999986542211100 1123567788999999987654443
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=2.7e-07 Score=96.66 Aligned_cols=206 Identities=16% Similarity=0.128 Sum_probs=131.9
Q ss_pred CCCcEEEcCCCCCCCC-CChhhhhhcccccccccccccCc---cCChhccCCCCCCeEEecccCCCCcCCCCcCccccce
Q 000630 788 VKLEKLNLGKCKSLKQ-LPNCIGTQLIALKELSFNYSAVE---ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLI 863 (1382)
Q Consensus 788 ~~L~~L~l~~~~~~~~-l~~~~~~~l~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 863 (1382)
..++.|.+.+|.+-.. ....++...+.++++++.+|.+. ++...+.++|.|+.|+|+.|++...+...-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3444555555542221 12234455788999999999887 4455678899999999999988665543335778999
Q ss_pred eeeccCCCC--cccCcccCCCcccccccccCccCCCCC--ccccc-CCCCCcEEecCCCcCc---cCccccCCcccccee
Q 000630 864 EFLIDGTAV--KNLPASIGSLSYLKAFSVGRCQFLSEL--PDSIE-GLASLVELQLDGTSIR---HLPDQIGGLKMLDKL 935 (1382)
Q Consensus 864 ~L~l~~n~~--~~lp~~l~~l~~L~~L~L~~~~~~~~~--~~~l~-~l~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L 935 (1382)
.|-|.|+.+ +.....+..+|.++.|.++.|.+.... ..... .-+.+++|....|... .+-..-.-+|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999999876 466667788889999998888433211 11111 1234555555555433 111122336777778
Q ss_pred eccCCccCCcc-cccccCCCCCCEEEcccccCcccCc--cccCCCCCceeccccccccccc
Q 000630 936 VMRNCLSLKTL-PDSIGSILTLTTLNIVNASITRMPE--SIGILENLVILRLNECKQLEKL 993 (1382)
Q Consensus 936 ~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~n~~~~~~ 993 (1382)
.+..|++.... ...+..+|.+..|+|+.|+|.++.+ .+..+++|..|.++++++...+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 88777765443 2345566777778888888776543 4566777777777777776544
No 62
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.34 E-value=3.6e-06 Score=92.36 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCC
Q 000630 187 LDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSG 266 (1382)
Q Consensus 187 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 266 (1382)
.+..++++.+++.. ...+.|.|+|.+|+|||+||+.++++........+++. +.. +.... ..
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~----------~~~~~-~~---- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAE----------LAQAD-PE---- 83 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHH----------HHHhH-HH----
Confidence 45567788877642 34568889999999999999999997654443444443 111 10000 00
Q ss_pred CCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH---H-HhhHhcCCCc-CCCCCeEEEEeCCCCc-------
Q 000630 267 NKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS---Q-LNALCGDKEW-FSEGSRIIITTRDRGA------- 334 (1382)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IliTTR~~~~------- 334 (1382)
+...+.. .-+|||||++... . .+.+...... ...+.++|+||+....
T Consensus 84 --------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 84 --------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred --------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0111122 2389999996532 1 2223221111 1234588898874321
Q ss_pred --cccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 000630 335 --LPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGA 395 (1382)
Q Consensus 335 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~ 395 (1382)
.........+++++++.+|...++...+-....+.+ .+..+.+++.+.|.|..+..+..
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP--DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHH
Confidence 111112357999999999999998865432221111 25567778888888887766543
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.3e-05 Score=97.22 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+...-. .. ....+.-...+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~----~~------~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETG----VT------SQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccC----CC------CCCCcccHHHHHHhc
Confidence 468999999999999997442 2456679999999999999999997642110 00 000111111111100
Q ss_pred HhhCC-CCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEeCCCCccc-
Q 000630 262 DLSSG-NKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITTRDRGALP- 336 (1382)
Q Consensus 262 ~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTTR~~~~~~- 336 (1382)
.-... ...........+++.+.++.+... ..++.-++|||+++... .++.|+..+....+..++|+||.+..-..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 00000 000000000011111111111110 12345588899998753 35666655544456788888887654322
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP-LALEV 392 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~ 392 (1382)
. ......+.++.++.++..+.+.+..-...... ..+..+.|++.++|.. -|+.+
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 23457899999999999999986553222111 1256677888888855 35544
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.5e-07 Score=112.89 Aligned_cols=194 Identities=25% Similarity=0.143 Sum_probs=106.2
Q ss_pred cccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCCCCCcccEEeccCccccccccccccCCCCCceEe
Q 000630 644 PFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLN 723 (1382)
Q Consensus 644 ~~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 723 (1382)
...+..+++..|.|..+-. ....+.+|..|++.+|.+......+..+++|++|++++|.+.... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~--~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN--HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhc--ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3455556666666665211 345566777777776643333222666777777777776554432 255566677777
Q ss_pred ccCCCCCccCCccCCCCCCCCEEEccCCCCCCCCc-ccccccCCccEEEecCccccccCccccCCCCCcEEEcCCCCCCC
Q 000630 724 LRDCRNLIELPSDVSGLKHLENLILSDCSKLKELP-EDICSMRSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLK 802 (1382)
Q Consensus 724 L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~p-~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~ 802 (1382)
+++|.+... ..+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+..+. ++..+..+..+++..|.+..
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhccccccee
Confidence 777654322 224446677777777765543332 1 456667777777777666443 22233334444555554333
Q ss_pred CCChhhhhhcc--cccccccccccCccCChhccCCCCCCeEEecccCC
Q 000630 803 QLPNCIGTQLI--ALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGS 848 (1382)
Q Consensus 803 ~l~~~~~~~l~--~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~ 848 (1382)
.-+... +. +|+.+++++|.+..++..+..+..+..|++.++.+
T Consensus 223 ~~~l~~---~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 223 LEGLNE---LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccCccc---chhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 222111 12 26667777776666655555566666666655544
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.1e-05 Score=97.57 Aligned_cols=196 Identities=15% Similarity=0.054 Sum_probs=111.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc--c-ceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE--H-RSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
..+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+..... . .|..+ .....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-------------~sC~~ 81 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-------------SSCVE 81 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-------------hHHHH
Confidence 468999999999999986432 2345579999999999999999997643210 0 00000 00000
Q ss_pred HHHHhhCC-CCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-C
Q 000630 259 LIFDLSSG-NKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-G 333 (1382)
Q Consensus 259 ll~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~ 333 (1382)
+....... ............++.+....+.. -..+++-++|||+++.. +..+.|+..+.......++|++|.+. .
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 00000000 00000000111112222222211 12356779999999764 45667666655555667777766544 3
Q ss_pred cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000630 334 ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVF 393 (1382)
Q Consensus 334 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 393 (1382)
+... ......|++.+++.++..+++...+-.... .-..+.++.|++.++|.|- |+.++
T Consensus 162 Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 162 LPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred chHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 223578999999999999999865532111 1112567789999999885 44443
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.9e-05 Score=90.86 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+....... ..+.+.-....++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~----------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT----------SNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCCCHHHHHHhc
Confidence 46899999999999998643 2345678999999999999999999764221100 000000001111111
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEeCCC-C
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITTRDR-G 333 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTTR~~-~ 333 (1382)
........ .. .......+ ..+.+.+.+ .+++-++|+|+++... .++.++.......+..++|++|.+. .
T Consensus 85 ~~~~d~~~-~~-~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 85 GLCLDLIE-ID-AASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred CCCCceEE-ec-ccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 00000000 00 00000011 112222221 2345689999998754 4556665555555667777777543 2
Q ss_pred cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 334 ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 334 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
+... ......+++++++.++..+.+...+-......+ .+.++.|++.++|.|-.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~--~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD--EYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 3221 123468999999999999888865533221111 24567789999998863
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.26 E-value=1.8e-05 Score=92.93 Aligned_cols=197 Identities=19% Similarity=0.127 Sum_probs=104.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc-ccc-eeeeeccccccCCCCHHHHHH--
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF-EHR-SFISNVRETSGQNDGLVSLQN-- 257 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~-~~~~~~~~~~~~~~~~~~l~~-- 257 (1382)
+.++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+.... ... +++. +.+..... ...+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~--~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG--KKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc--hhhhhcCc
Confidence 56899999999999998643 345678999999999999999999765432 221 2222 11100000 000000
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHH-HHHH-----cCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEe
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEI-KNVV-----RERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITT 329 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l-----~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTT 329 (1382)
.....+... ........+..+.+ +... ...+-+||+||++... ....+........+.+++|+||
T Consensus 90 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 90 RFAHFLGTD-------KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred chhhhhhhh-------hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 000000000 00000001111111 1111 1234589999997542 2333333222234567888887
Q ss_pred CCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 330 RDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 330 R~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
... .+... ......+++.+++.++..+++...+-.....- ..+.++.+++.++|.+-.+..
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY--DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 543 22221 12345788999999999998887653222111 125677888888887655443
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.7e-06 Score=95.86 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=44.0
Q ss_pred CCCCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCc-cCccCCcccCCCCCCcEEEc
Q 000630 953 ILTLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEET-AVTELPESFGMLSSLMVLKM 1031 (1382)
Q Consensus 953 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l 1031 (1382)
+.++..|++++|.+..+|. -.++|+.|.+++|..+..+|..+. ++|+.|++++| .+..+|. +|+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEe
Confidence 4566677777776666662 234677777777777666665442 46777777776 5545543 3555555
Q ss_pred cCC
Q 000630 1032 KKP 1034 (1382)
Q Consensus 1032 ~~n 1034 (1382)
+.+
T Consensus 120 ~~n 122 (426)
T PRK15386 120 KGS 122 (426)
T ss_pred CCC
Confidence 544
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-08 Score=105.81 Aligned_cols=114 Identities=27% Similarity=0.278 Sum_probs=64.2
Q ss_pred CCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCC--ccCCCCCCCCEEEccCCCCCCCCcccc-c-cc
Q 000630 689 LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELP--SDVSGLKHLENLILSDCSKLKELPEDI-C-SM 764 (1382)
Q Consensus 689 l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~Ls~~~~~~~~p~~l-~-~l 764 (1382)
++.|.+|+.|.|+++.....+-..+..-.+|+.|+|+.|+..++.. --+.+++.|..|+|++|......-..+ . --
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3445566666666666666555666666777777777766555332 124566777777777776554321111 1 12
Q ss_pred CCccEEEecCcccc----ccCccccCCCCCcEEEcCCCCCCC
Q 000630 765 RSLKELLVDGTAIE----KLPQSIFHLVKLEKLNLGKCKSLK 802 (1382)
Q Consensus 765 ~~L~~L~L~~~~i~----~lp~~l~~l~~L~~L~l~~~~~~~ 802 (1382)
++|+.|+|+|+.-. .+..-..++++|.+|||++|..+.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 46667777665321 222223456777777777765444
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.9e-05 Score=89.59 Aligned_cols=202 Identities=15% Similarity=0.167 Sum_probs=125.6
Q ss_pred CccccCcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccc--eeeeeccccccCCCCH
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHR--SFISNVRETSGQNDGL 252 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~ 252 (1382)
|...|+.+.+||.+++++...|.. ......-+.|+|.+|.|||+.++.+++++....... +++. +......
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-----c~~~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-----CLELRTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-----eeeCCCH
Confidence 344566799999999999988753 112233488999999999999999999887764444 4443 3445677
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc--CCcEEEEEcCCCChH-----HHhhHhcCCCcCCCCCeE
Q 000630 253 VSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDPS-----QLNALCGDKEWFSEGSRI 325 (1382)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~~-----~l~~l~~~~~~~~~gs~I 325 (1382)
.++..+++..+.. . ........+..+.+.+.+. ++.+++|||+++... .+-.|...... ..++|
T Consensus 87 ~~i~~~i~~~~~~---~----p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v 157 (366)
T COG1474 87 YQVLSKILNKLGK---V----PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKV 157 (366)
T ss_pred HHHHHHHHHHcCC---C----CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--cceeE
Confidence 7888888887762 1 2223334455566666664 478999999997532 23333322211 13443
Q ss_pred EE--EeCCC--------CccccCCCccEEEcCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCC-ChHHHH
Q 000630 326 II--TTRDR--------GALPEHYVNQLYEVQKLDSSRALQLFSYHA---LGRENPTDKFFKISEQIVSLTGG-LPLALE 391 (1382)
Q Consensus 326 li--TTR~~--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~g-~PLal~ 391 (1382)
+| .+-+. .+....+ ...+..++-+.+|-.+.+..++ |......++..+++..++..-+| -=.|+.
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aid 236 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAID 236 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHH
Confidence 33 33222 2222222 2347899999999999998876 33344445555666666666664 334444
Q ss_pred HH
Q 000630 392 VF 393 (1382)
Q Consensus 392 ~~ 393 (1382)
++
T Consensus 237 il 238 (366)
T COG1474 237 IL 238 (366)
T ss_pred HH
Confidence 44
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.25 E-value=1.4e-05 Score=93.98 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=100.3
Q ss_pred cccCcccchhHHHHHHHHHhcCC-----------CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeecccccc
Q 000630 179 KVAAYNVGLDFRIKEVIRLLDVK-----------SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSG 247 (1382)
Q Consensus 179 ~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 247 (1382)
.....+.|++..+++|.+.+... -...+-|.++|++|+|||++|++++++....|-.. .
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v----------~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV----------V 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec----------c
Confidence 33456899999999998876421 11245688999999999999999999775443211 0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh----------------HHHh
Q 000630 248 QNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP----------------SQLN 310 (1382)
Q Consensus 248 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~----------------~~l~ 310 (1382)
...+....... .......+.+. -...+.+|+||+++.. ..+.
T Consensus 189 ----~~~l~~~~~g~-----------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~ 247 (364)
T TIGR01242 189 ----GSELVRKYIGE-----------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLM 247 (364)
T ss_pred ----hHHHHHHhhhH-----------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHH
Confidence 01111111000 01111112221 1346689999998653 1122
Q ss_pred hHhcCCCcC--CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 000630 311 ALCGDKEWF--SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLT 383 (1382)
Q Consensus 311 ~l~~~~~~~--~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 383 (1382)
.++...+.+ ..+.+||.||....... ....+..++++..+.++..++|..++.+.....+ .....+++.+
T Consensus 248 ~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t 324 (364)
T TIGR01242 248 QLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMT 324 (364)
T ss_pred HHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHc
Confidence 333222211 24667888887543221 1123568999999999999999987754332221 1134566777
Q ss_pred CCCh
Q 000630 384 GGLP 387 (1382)
Q Consensus 384 ~g~P 387 (1382)
.|..
T Consensus 325 ~g~s 328 (364)
T TIGR01242 325 EGAS 328 (364)
T ss_pred CCCC
Confidence 6654
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.8e-07 Score=112.29 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=41.9
Q ss_pred cccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCccccccccc
Q 000630 812 LIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVG 891 (1382)
Q Consensus 812 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~ 891 (1382)
+..++.+.+..|.+..+-..+..+++|+.|++.+|.+..... .+..+++|+.|++++|.|..+.. +..++.|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc-hhhccchhhheec
Confidence 566666667776666644445555666666666655433321 13445555555555555544432 3333334444444
Q ss_pred CccC
Q 000630 892 RCQF 895 (1382)
Q Consensus 892 ~~~~ 895 (1382)
+|.+
T Consensus 149 ~N~i 152 (414)
T KOG0531|consen 149 GNLI 152 (414)
T ss_pred cCcc
Confidence 4443
No 73
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3.3e-05 Score=88.81 Aligned_cols=175 Identities=16% Similarity=0.190 Sum_probs=108.8
Q ss_pred cccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc------ccccceeeeeccccccCCCCHHHHH
Q 000630 183 YNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD------QFEHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
.++|-+..++++.+.+..+ .-.....++|+.|+||||+|+.+++.+.. +.+...|... ......+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~----~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI----NKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc----cCCCCCHHH-H
Confidence 5789889999999998643 23457789999999999999999997632 2222222210 011112222 1
Q ss_pred HHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCC--ChHHHhhHhcCCCcCCCCCeEEEEeCCCCc
Q 000630 257 NKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVD--DPSQLNALCGDKEWFSEGSRIIITTRDRGA 334 (1382)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~--~~~~l~~l~~~~~~~~~gs~IliTTR~~~~ 334 (1382)
+++...+.. . -..+++-++|+|+++ +.+..+.++..+....+++.+|++|.+.+.
T Consensus 79 r~~~~~~~~--------~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ 135 (313)
T PRK05564 79 RNIIEEVNK--------K---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ 135 (313)
T ss_pred HHHHHHHhc--------C---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 222222211 0 012344556667665 455677787777777788999988876542
Q ss_pred c-cc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 335 L-PE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 335 ~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
+ +. ......+++.++++++....+.....+. . .+.++.++.+++|.|..+..
T Consensus 136 ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~---~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 136 ILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDI---K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHHH
Confidence 2 21 2335689999999999988887543211 1 14467889999999875543
No 74
>PTZ00202 tuzin; Provisional
Probab=98.22 E-value=2.7e-05 Score=87.78 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=98.7
Q ss_pred ccccCcccchhHHHHHHHHHhcCCC-CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHH
Q 000630 178 MKVAAYNVGLDFRIKEVIRLLDVKS-SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 178 ~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
+.....|+||+.++.+|...|...+ ...++++|.|++|+|||||++.+..... ...++.+.+ +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHH
Confidence 4456789999999999999996432 3456999999999999999999997653 224554322 568888
Q ss_pred HHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-c-CCcEEEEEcCC--CCh----HHHhhHhcCCCcCCCCCeEEEE
Q 000630 257 NKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV-R-ERKVFVVLDDV--DDP----SQLNALCGDKEWFSEGSRIIIT 328 (1382)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~~r~LlVLDdv--~~~----~~l~~l~~~~~~~~~gs~IliT 328 (1382)
+.++.+|+... . .....-.....+.+.+.- . +++.+||+-== .+. .+.-.|.-. ..-|+|++-
T Consensus 327 r~LL~ALGV~p----~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~e 397 (550)
T PTZ00202 327 RSVVKALGVPN----V-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIE 397 (550)
T ss_pred HHHHHHcCCCC----c-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeee
Confidence 88888887311 0 111111223333333322 2 56777777311 111 122222211 355778775
Q ss_pred eCCCCcccc---CCCccEEEcCCCCHHHHHHHHH
Q 000630 329 TRDRGALPE---HYVNQLYEVQKLDSSRALQLFS 359 (1382)
Q Consensus 329 TR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~ 359 (1382)
---+.+-.. ...-+.|-++.++.++|.++-.
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHh
Confidence 543322111 1123579999999999998876
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.22 E-value=1.4e-05 Score=87.12 Aligned_cols=165 Identities=17% Similarity=0.092 Sum_probs=93.0
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
+|=...+..+...... .....+.|+|.+|+|||+||+++++....+...+.|+. . .+....+.
T Consensus 23 ~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-----~------~~~~~~~~---- 85 (233)
T PRK08727 23 AAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-----L------QAAAGRLR---- 85 (233)
T ss_pred CCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-----H------HHhhhhHH----
Confidence 4444455555444422 22346899999999999999999998766544455554 1 11111110
Q ss_pred CCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh----HHHhhHhcCCCc-CCCCCeEEEEeCCCC------
Q 000630 265 SGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP----SQLNALCGDKEW-FSEGSRIIITTRDRG------ 333 (1382)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~----~~l~~l~~~~~~-~~~gs~IliTTR~~~------ 333 (1382)
+ ..+.+ .+.-+|||||++.. ..-..+...... ...|..||+|++...
T Consensus 86 --------------------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 86 --------------------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred --------------------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 0 11111 13358999999642 111122211111 134667999998431
Q ss_pred ---ccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 334 ---ALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 334 ---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
+.........+++++++.++-.+++..++....-..+ .+....|++.++|-.-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~--~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD--EAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 1122223458999999999999999987643222111 255667777776554433
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.9e-05 Score=93.32 Aligned_cols=195 Identities=13% Similarity=0.012 Sum_probs=108.3
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||.+...+.|.+++..+. -...+.++|+.|+||||+|+.+++.+.... +.. ....+.-...+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~------~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVT------STPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCC------CCCCccCHHHHHHhc
Confidence 468999999999999997442 346778999999999999999999764221 110 000110011111100
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-ccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-ALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~~ 336 (1382)
.-.... ...........+..+.+..+.. -..+++-++|+|+|+.. .....++.......++.++|++|.+.. +..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000000 0000000011111111111111 11246678999999864 355566655544456678888776543 211
Q ss_pred -cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 337 -EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 337 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
.......+++.+++.++..+.+...+-...... ..+....|++.++|-+-.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRD 215 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 123456899999999999998886553322111 125567788999987743
No 77
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.21 E-value=6.3e-06 Score=87.27 Aligned_cols=50 Identities=34% Similarity=0.438 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 183 YNVGLDFRIKEVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.||||+++++++...|. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233457899999999999999999999988776
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=8.8e-07 Score=73.82 Aligned_cols=59 Identities=34% Similarity=0.548 Sum_probs=45.5
Q ss_pred CCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCch-hccCCcccceeeccccc
Q 000630 1060 SSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPS-SLRGLSHLKNLLLPYCQ 1118 (1382)
Q Consensus 1060 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~Ls~n~ 1118 (1382)
++|+.|++++|+++...+..|..+++|+.|++++|+++.+|. .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 457777777777776666778888888888888888886654 57888888888888876
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.2e-05 Score=90.86 Aligned_cols=194 Identities=14% Similarity=0.058 Sum_probs=109.6
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc--ccccceeeeeccccccCCCCHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD--QFEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
+.++|-+..++.|.+++..+. -...+.++|++|+||||+|+.+++.+.. .+...++.+.......... ..-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~------h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA------HPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC------CCc
Confidence 458999999999999887532 3356689999999999999999997642 2222344331000000000 000
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-CCcc
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-RGAL 335 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~~~~ 335 (1382)
+..+.. .......++.+..+.+.. -..+++-++|+|+++.. ..++.++.......+.+.+|++|.. ..+.
T Consensus 87 v~el~~------~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 87 VLEIDA------ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred eEEecc------cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 000000 000111111111111111 01245668999999764 4466666555444455566666543 3332
Q ss_pred cc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 336 PE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
.. ......+++.+++.++..+.+...+-...... ..+.+..|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 22 12356899999999999999987664322211 1256778999999988644
No 80
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.17 E-value=1.9e-05 Score=82.02 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=93.5
Q ss_pred cCcccchhHHHHHHHHHhcC---CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDV---KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
-+.|||-+.-++.+.-++.. ..+...-+.+||++|+||||||.-+++.....|. +... ..... ..++..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg--~~i~k---~~dl~~ 94 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG--PAIEK---AGDLAA 94 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC--CC--S---CHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc--hhhhh---HHHHHH
Confidence 46799999999887766542 2345677889999999999999999998876653 1210 00111 111111
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcC--------CCC-----
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP--SQLNALCGDKEWF--------SEG----- 322 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~--------~~g----- 322 (1382)
+...++ ++-+|.+|.+... .+-+.|.+....+ +++
T Consensus 95 -----------------------------il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 95 -----------------------------ILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp -----------------------------HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred -----------------------------HHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceee
Confidence 111122 3446666888552 2323232221111 111
Q ss_pred ------CeEEEEeCCCCccccCC--CccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 323 ------SRIIITTRDRGALPEHY--VNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 323 ------s~IliTTR~~~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
+-|=-|||...+..... ..-..+++..+.+|-.+...+.|-.-.. +-..+.+.+|++++.|-|--..-+-
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 23445777654432221 2235689999999999999876633222 2233788999999999997554444
Q ss_pred hhhC
Q 000630 395 AFLF 398 (1382)
Q Consensus 395 ~~L~ 398 (1382)
+.++
T Consensus 223 ~rvr 226 (233)
T PF05496_consen 223 RRVR 226 (233)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
No 81
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.16 E-value=1.6e-05 Score=80.51 Aligned_cols=45 Identities=38% Similarity=0.480 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~ 45 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFR 45 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 47889999999888642 3567889999999999999999998753
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=98.16 E-value=5e-05 Score=92.62 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=105.1
Q ss_pred cCcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
-..++|.+..++++.+++.. .....+.+.|+|++|+||||+|+++++++. |+.. -+ + .+..... .....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-n----asd~r~~-~~i~~ 83 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-N----ASDQRTA-DVIER 83 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-c----ccccccH-HHHHH
Confidence 34689999999999999864 112367899999999999999999999763 2211 11 1 2222111 12222
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH------HHhhHhcCCCcCCCCCeEEEEeCCC
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS------QLNALCGDKEWFSEGSRIIITTRDR 332 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~------~l~~l~~~~~~~~~gs~IliTTR~~ 332 (1382)
++...... . .....++-+||+|+++... .+..+..... ..+..||+|+.+.
T Consensus 84 ~i~~~~~~--------~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~ 140 (482)
T PRK04195 84 VAGEAATS--------G-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDP 140 (482)
T ss_pred HHHHhhcc--------C-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCc
Confidence 22222110 0 0011367799999997642 2444433222 2344566666543
Q ss_pred C-ccc--cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 333 G-ALP--EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 333 ~-~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
. ... .......+++++++.++....+...+.......+ .+....|++.++|-.-.+..
T Consensus 141 ~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 141 YDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 2 111 1123568999999999999888866533222111 25678889999887665443
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=0.00016 Score=83.80 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=110.8
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc--ccceeeeeccccccCCCCHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF--EHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
...++|-+...+.|.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+- .....-.. ...-...+.-...+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~--~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP--PTSLAIDPDHPVARR 94 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc--cccccCCCCChHHHH
Confidence 4578999999999999987542 234678999999999999999999763211 10000000 000000000011111
Q ss_pred HHHHhhCCCC-C-CC-CCCC----cccchhhcHHHHHHHHc-----CCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCe
Q 000630 259 LIFDLSSGNK-V-PT-ENVP----TENVVTANIAEIKNVVR-----ERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSR 324 (1382)
Q Consensus 259 ll~~l~~~~~-~-~~-~~~~----~~~~~~~~~~~l~~~l~-----~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~ 324 (1382)
+...-..... . +. .... ..-.+ +.++.+.+.+. +++.++|+|+++.. .....|+.......+++.
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~V-dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITV-DEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccH-HHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 1110000000 0 00 0000 00011 12333333332 35678999999764 344555544443356677
Q ss_pred EEEEeCCCC-cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 325 IIITTRDRG-ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 325 IliTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
+|++|.+.. +... ......+.+.+++.++..+++...... ..+ +....+++.++|.|+....+.
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 777777653 3221 234678999999999999999865411 111 222678999999998665543
No 84
>PF13173 AAA_14: AAA domain
Probab=98.15 E-value=5.4e-06 Score=81.31 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=72.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
+++.|.|+.|+|||||+++++++.. .-...+++. .... .. .. . . +.+ ..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-----~~~~---~~-~~-~----~--------------~~~-~~~ 52 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-----FDDP---RD-RR-L----A--------------DPD-LLE 52 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-----cCCH---HH-HH-H----h--------------hhh-hHH
Confidence 5889999999999999999998765 223344443 1111 00 00 0 0 000 123
Q ss_pred HHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCcccc------CCCccEEEcCCCCHHHH
Q 000630 286 EIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGALPE------HYVNQLYEVQKLDSSRA 354 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~------~~~~~~~~l~~L~~~ea 354 (1382)
.+.+....++.+++||+|....+|...+.......+..+|++|+........ .+....+++.+|+..|-
T Consensus 53 ~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 53 YFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3333333477889999998876666555443333456899999986644321 12344789999988773
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=98.12 E-value=2.1e-05 Score=90.62 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=103.3
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc-ccccceeeeeccccccCCCCHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD-QFEHRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
..++|.+..++.|..++..+ ..+-+.++|++|+||||+|..+++.+.. .|...+.-.+ .+...+...+ +..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~v-r~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDVV-RNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHHH-HHHH
Confidence 46889999899998887643 3445679999999999999999998643 2322211111 1222222222 2222
Q ss_pred HHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc
Q 000630 261 FDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE 337 (1382)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~ 337 (1382)
..+.... .. .-.++.-++|||+++.. .....+........+.+++|+++... .+...
T Consensus 86 ~~~~~~~-------~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 86 KMFAQKK-------VT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHHhcc-------cc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchh
Confidence 2221100 00 00134568999999874 23333433333345667777777543 22221
Q ss_pred C-CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 338 H-YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 338 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
. .....+++++++.++..+.+...+-.....-+ .+..+.|++.++|-.-.
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 1 12457999999999999888876633221111 24567788888876643
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.7e-05 Score=92.21 Aligned_cols=200 Identities=13% Similarity=0.059 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc-ceeeeeccccccCCCCHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH-RSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
..+||-+.-++.|.+.+..+. -...+.++|..|+||||+|+.+++.+...-.. .--+ .....+.-.....+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~------~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI------TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC------CCCCCcccHHHHHHH
Confidence 468999999999999997542 24566899999999999999999976421000 0000 000111111111111
Q ss_pred HHhh-CCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccc
Q 000630 261 FDLS-SGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GAL 335 (1382)
Q Consensus 261 ~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~ 335 (1382)
..-. .-...........+++.+.++.+... ..++.-++|||+++.. ...+.|+..+.....+.++|++|.+. .+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0000 00000000001111111111111110 1345668999999864 45677776666555667766666543 333
Q ss_pred cc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 336 PE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
.. ......+.++.++.++..+.+.+.+-......+ .+..+.|++.++|.|...
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d--~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE--VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 22 123568999999999999988865432211111 245677899999988643
No 87
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.11 E-value=7.8e-06 Score=80.90 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=71.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcc-----cccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQ-----FEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENV 279 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 279 (1382)
.+++.|+|.+|+|||++++.+++..... -...+|+. .........+...++..+.... .....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~~~-------~~~~~ 71 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-----CPSSRTPRDFAQEILEALGLPL-------KSRQT 71 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-----HHHHSSHHHHHHHHHHHHT-SS-------SSTS-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-----eCCCCCHHHHHHHHHHHhCccc-------cccCC
Confidence 4688999999999999999999976543 23344554 3333478888888988887532 11234
Q ss_pred hhhcHHHHHHHHcCCc-EEEEEcCCCCh---HHHhhHhcCCCcCCCCCeEEEEeCC
Q 000630 280 VTANIAEIKNVVRERK-VFVVLDDVDDP---SQLNALCGDKEWFSEGSRIIITTRD 331 (1382)
Q Consensus 280 ~~~~~~~l~~~l~~~r-~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IliTTR~ 331 (1382)
..+..+.+.+.+...+ .+||+|+++.. +.++.+....+ ..+.+||+..+.
T Consensus 72 ~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 72 SDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4555567777776544 59999999765 23444432222 567778887765
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.1e-05 Score=92.35 Aligned_cols=196 Identities=14% Similarity=0.056 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+...-... +. ..+.-...+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~---------pCg~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GE---------PCGVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CC---------CCcccHHHHHHhc
Confidence 468999999999999997532 245678999999999999999998754221100 00 0000000000000
Q ss_pred H-hhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEeCCCC-ccc
Q 000630 262 D-LSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITTRDRG-ALP 336 (1382)
Q Consensus 262 ~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTTR~~~-~~~ 336 (1382)
. ...-...........+++.+.+...... ..+++-++|+|+++... ....|+..+......+++|++|.+.. +..
T Consensus 85 g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred cCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 0000000000000111111111111110 12456789999997643 34444444433345677777776543 221
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
. ......+.+..++.++..+.+...+-...... ..+.++.|++.++|.+.-+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHH
Confidence 1 12345788889999999998886553322111 1256778999999888533
No 89
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=6.5e-08 Score=112.50 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=101.7
Q ss_pred CCCEEEcccccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcccCCCCCCcEEEccCC
Q 000630 955 TLTTLNIVNASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPESFGMLSSLMVLKMKKP 1034 (1382)
Q Consensus 955 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n 1034 (1382)
.|.+.+.++|.+..+..++.-++.|+.|+|++|++...- .+..|+.|++|||+.|.+..+|..-..--.|..|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 577778889999989888999999999999999987654 678899999999999999988864333334999999999
Q ss_pred CCcccCcchhhccccccccccccCCCCcceecccCcccCCCC-CCccCCCCCCCEeeccCCCCCcCc
Q 000630 1035 SVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKI-PDDFEKLSSLEILNLGNNNFCNLP 1100 (1382)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~-~~~l~~l~~L~~L~Ls~N~l~~lp 1100 (1382)
.++.. ..+.+|.+|+.||+++|-+.+-- ..-+..|..|+.|.|.+|.+..-|
T Consensus 243 ~l~tL--------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 ALTTL--------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred HHHhh--------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 65433 34678889999999999877532 223455678888899998876444
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=4.4e-05 Score=83.61 Aligned_cols=170 Identities=13% Similarity=0.105 Sum_probs=92.6
Q ss_pred ccchhHHH-HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHH
Q 000630 184 NVGLDFRI-KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFD 262 (1382)
Q Consensus 184 ~vGr~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 262 (1382)
+.|..... ..+.++... ....+.+.|+|.+|+|||+||+++++.....-....++. ... ....
T Consensus 21 ~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-----~~~------~~~~---- 84 (227)
T PRK08903 21 VAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-----AAS------PLLA---- 84 (227)
T ss_pred ccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-----hHH------hHHH----
Confidence 34554443 444454432 233467889999999999999999997644322334443 100 0000
Q ss_pred hhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcC-CCCC-eEEEEeCCCCccc--
Q 000630 263 LSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP--SQLNALCGDKEWF-SEGS-RIIITTRDRGALP-- 336 (1382)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~-~~gs-~IliTTR~~~~~~-- 336 (1382)
+ .. ....-+||+||++.. .+.+.+....... ..+. .||+|++......
T Consensus 85 ~-------------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 85 F-------------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred H-------------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 0 00 112347888999653 2222222211111 2333 3666665432111
Q ss_pred ------cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHhhh
Q 000630 337 ------EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGAFL 397 (1382)
Q Consensus 337 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~~L 397 (1382)
.......++++++++++-..++...+-.....-+ .+..+.+++...|.+..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA--DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1112358899999998877777654322111111 2567778888999998877666554
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=4.2e-05 Score=83.49 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=86.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
+.+.|+|..|+|||.||+++++.+..+-..++|+. . .++... ..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-----~------~~~~~~-------------------------~~ 89 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-----L------AELLDR-------------------------GP 89 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-----H------HHHHhh-------------------------hH
Confidence 57889999999999999999998765444455654 1 111100 01
Q ss_pred HHHHHHcCCcEEEEEcCCCCh---HHHhh-HhcCCCc-CCCCCeEEEEeCCCC---------ccccCCCccEEEcCCCCH
Q 000630 286 EIKNVVRERKVFVVLDDVDDP---SQLNA-LCGDKEW-FSEGSRIIITTRDRG---------ALPEHYVNQLYEVQKLDS 351 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gs~IliTTR~~~---------~~~~~~~~~~~~l~~L~~ 351 (1382)
.+.+.+++-. +||+||+... .+++. +...+.. ...|.+||+|++... +..+......+++++++.
T Consensus 90 ~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 90 ELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred HHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 1222222222 6788999532 22221 2222111 135678999887431 112222346789999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 352 SRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 352 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
++-.+.+..++....-.-+ .+...-|++++.|-.-++..+-
T Consensus 169 e~~~~il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 169 EDKLRALQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999866643221111 2566777777777665554443
No 92
>PF14516 AAA_35: AAA-like domain
Probab=98.09 E-value=0.00049 Score=79.35 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=120.1
Q ss_pred ccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeecccccc-CCCCHHHHHHH
Q 000630 180 VAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSG-QNDGLVSLQNK 258 (1382)
Q Consensus 180 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~ 258 (1382)
..+..|+|...-+++.+.+.. .-..+.|.|+-.+|||+|..++.++....-..++++. +....+ ...+.....+.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHH
Confidence 345678898666677776653 2358899999999999999999998765423334443 333211 12355656666
Q ss_pred HHHHhhCCCCCCCCCC--C--cccchhhcHHHHHHHH-c--CCcEEEEEcCCCChHH---H-hhHhcC-CCcCC------
Q 000630 259 LIFDLSSGNKVPTENV--P--TENVVTANIAEIKNVV-R--ERKVFVVLDDVDDPSQ---L-NALCGD-KEWFS------ 320 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~--~--~~~~~~~~~~~l~~~l-~--~~r~LlVLDdv~~~~~---l-~~l~~~-~~~~~------ 320 (1382)
+...+....+....-. . ...........+.+.+ . +++++|+||+|+..-. + ..+.+. ..|..
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 6666554332221100 0 0111112223333332 2 5899999999975311 1 111111 00110
Q ss_pred -CCCeEEEEeCCC---Cccc----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 321 -EGSRIIITTRDR---GALP----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 321 -~gs~IliTTR~~---~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
...-.+|..... .... ...+...++|++++.+|...|...+...-. + ...++|...+||+|.-+..
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~---~---~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS---Q---EQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC---H---HHHHHHHHHHCCCHHHHHH
Confidence 011112222111 1111 113456899999999999999986643211 1 3388999999999999999
Q ss_pred HHhhhCCC
Q 000630 393 FGAFLFDK 400 (1382)
Q Consensus 393 ~g~~L~~~ 400 (1382)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99998653
No 93
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.8e-05 Score=88.37 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=103.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
+.+||.+...+.|.+.+..+. -...+.++|++|+||||+|+.+++.+...=. ..+. +.+.-.....+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~--~~~~--------pc~~c~~c~~i~~ 82 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENR--KGVE--------PCNECRACRSIDE 82 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccC--CCCC--------CCcccHHHHHHhc
Confidence 468999998888888886432 2345789999999999999999987532100 0000 0000000000000
Q ss_pred HhhCCCCCCCC--CCCcccchhhcHHHHHHH-----HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-
Q 000630 262 DLSSGNKVPTE--NVPTENVVTANIAEIKNV-----VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD- 331 (1382)
Q Consensus 262 ~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~-----l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~- 331 (1382)
+...... ........++ ++.+.+. ..+++-++|+|+++.. ++.+.++.......+...+|++|.+
T Consensus 83 ----g~~~dv~el~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 83 ----GTFMDVIELDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred ----CCCCccEEEeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 0000000 0000000000 1112111 1245678999999764 3455565554443444454445443
Q ss_pred CCcccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-ChHHHHHHHh
Q 000630 332 RGALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGG-LPLALEVFGA 395 (1382)
Q Consensus 332 ~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~g~ 395 (1382)
..+... ......+++.+++.++....+...+......-+ .+....|++.++| .+.|+..+-.
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 223221 123468999999999999888876633221111 2556778887755 4666666654
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.08 E-value=6.8e-05 Score=80.77 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=94.0
Q ss_pred ccchhHH--HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc-c-ceeeeeccccccCCCCHHHHHHHH
Q 000630 184 NVGLDFR--IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE-H-RSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 184 ~vGr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
++|-..+ .................+.|+|..|.|||.|.+++++.+....+ . ++++. ..+....+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~ 79 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREF 79 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHH
Confidence 4565444 23333333332233456789999999999999999998766443 2 33443 23334444
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH---HH-hhHhcCCCc-CCCCCeEEEEeCCC-C
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS---QL-NALCGDKEW-FSEGSRIIITTRDR-G 333 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~---~l-~~l~~~~~~-~~~gs~IliTTR~~-~ 333 (1382)
...+.. .....+++.++. -=+|++||++... .+ +.+...+.. ...|.+||+|++.. .
T Consensus 80 ~~~~~~----------------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 80 ADALRD----------------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHT----------------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred HHHHHc----------------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 444331 123455565654 3467789996531 11 112111111 13567999999643 2
Q ss_pred ccc--------cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000630 334 ALP--------EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 334 ~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 391 (1382)
-+. +....-.+++++++.++..+++.++|-...-.- -.++++-|++.+.+..-.|.
T Consensus 143 ~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l--~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 143 ELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL--PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp TTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHHH
T ss_pred cccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHhhcCCHHHHH
Confidence 111 122345899999999999999998774332221 12455566666555444443
No 95
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.08 E-value=7.5e-06 Score=80.20 Aligned_cols=89 Identities=20% Similarity=0.358 Sum_probs=49.5
Q ss_pred ccEEEccccccccchHHHHHHHHHHhCC-------cEE----------EEeCCCCCCCCcchHHHHHHHHhcceEEEEec
Q 000630 15 WDVFLSFRGEDTRDTITRNLYNSLHDHG-------VRV----------FKDDYGLARGDEIAPSLIDAIYDSAASIIILS 77 (1382)
Q Consensus 15 ~dvfis~~~~d~~~~~~~~l~~~l~~~g-------~~~----------~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s 77 (1382)
|.|||||+++|. ..+++.|...+...| +.. +.+..+....+.+...|.++|.+|+++||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 579999999993 237787887777632 211 12222233455789999999999999999999
Q ss_pred CCcccChhhHHHHHHHHHcCCeEEEEE
Q 000630 78 PNYGSSRWCLEELAKICELNRLILPVF 104 (1382)
Q Consensus 78 ~~y~~s~w~~~e~~~~~~~~~~~ipv~ 104 (1382)
++-..|.|+..|+.++++.+..||.|-
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT---EEEEE
T ss_pred CCcccCcHHHHHHHHHHHCCCCEEEEE
Confidence 999999999999999999888888883
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=8.7e-05 Score=81.13 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=93.9
Q ss_pred cccchhH-HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 183 YNVGLDF-RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 183 ~~vGr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
.++|... .+..+.++... ...+.+.|+|++|+|||+||+++++.....-..+.|+. .... . ..
T Consensus 24 f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-----~~~~------~-~~-- 87 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-----LDKR------A-WF-- 87 (235)
T ss_pred cccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-----HHHH------h-hh--
Confidence 3446322 34445555432 23457889999999999999999997765433344543 1100 0 00
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh---HHHhh-HhcCCCc-CCCC-CeEEEEeCCC---
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP---SQLNA-LCGDKEW-FSEG-SRIIITTRDR--- 332 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~---~~l~~-l~~~~~~-~~~g-s~IliTTR~~--- 332 (1382)
...+.+.+.. --+|++||+... .+|+. +...+.. ...| .++|+||+..
T Consensus 88 ----------------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 88 ----------------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred ----------------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 0011111111 237889999652 22221 1111110 1233 4799999854
Q ss_pred ------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 333 ------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 333 ------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
++.++......++++++++++-.+.+.+++....-.. -.+...-|++.+.|..-++..+
T Consensus 145 l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l--~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 145 LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL--PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhhcCCHHHHHHH
Confidence 1222333456899999999999999887664322111 1256777777777766555444
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=2.2e-07 Score=102.25 Aligned_cols=293 Identities=21% Similarity=0.289 Sum_probs=134.3
Q ss_pred cccEEecCCCcCCCcCC--C-CCCCCcccEEeccCcccccccc--ccccCCCCCceEeccCCCCCccCC--ccCCCCCCC
Q 000630 671 NLMVLNLRGCWNLASIP--D-LSEHQKLEKLVLERCCRLTKIH--ESVGNLSSLLHLNLRDCRNLIELP--SDVSGLKHL 743 (1382)
Q Consensus 671 ~L~~L~L~~~~~~~~~~--~-l~~l~~L~~L~L~~~~~~~~~~--~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L 743 (1382)
.|+.|.|.||.....-+ . ..+++++++|.+.+|..++... ..-..+++|++|+|..|..++... .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45555555554444333 1 3566666666666665433211 122356667777776665544321 112356677
Q ss_pred CEEEccCCCCCCC--CcccccccCCccEEEecCcccc---ccCccccCCCCCcEEEcCCCCCCCCCChh-hhhhcccccc
Q 000630 744 ENLILSDCSKLKE--LPEDICSMRSLKELLVDGTAIE---KLPQSIFHLVKLEKLNLGKCKSLKQLPNC-IGTQLIALKE 817 (1382)
Q Consensus 744 ~~L~Ls~~~~~~~--~p~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~l~~~~~~~~l~~~-~~~~l~~L~~ 817 (1382)
++|++++|.-... +.....++.+|+.+.+.|+.-. .+-..-..+..+..+++..|..+....-. +...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 7777777654322 1112233444444444433211 11001112333444444444433322210 1111334444
Q ss_pred cccccccC-cc--CChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCcccCCCcccccccccCcc
Q 000630 818 LSFNYSAV-EE--LPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQ 894 (1382)
Q Consensus 818 L~l~~n~l-~~--l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~L~~~~ 894 (1382)
|..++..- +. +-.-..++.+|+.|.+..|...+..-. +. .-.+++.|+.+++..|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f------------------t~---l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF------------------TM---LGRNCPHLERLDLEECG 357 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh------------------hh---hhcCChhhhhhcccccc
Confidence 44433211 10 001123445666666666553222110 00 01234455555555554
Q ss_pred CCCC--CcccccCCCCCcEEecCCCcCc------cCccccCCccccceeeccCCccCCc-ccccccCCCCCCEEEccccc
Q 000630 895 FLSE--LPDSIEGLASLVELQLDGTSIR------HLPDQIGGLKMLDKLVMRNCLSLKT-LPDSIGSILTLTTLNIVNAS 965 (1382)
Q Consensus 895 ~~~~--~~~~l~~l~~L~~L~L~~n~l~------~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~ 965 (1382)
.... +...-.+++.|+.|.|+++... .+...-..+..|+.+.+.+|+.... .-..+..+++|+.+++.+++
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3221 2222234556666666654322 1122334566777888888876544 23455677788888887775
Q ss_pred Cc---ccCccccCCCCCceecc
Q 000630 966 IT---RMPESIGILENLVILRL 984 (1382)
Q Consensus 966 i~---~l~~~~~~l~~L~~L~L 984 (1382)
-. .+...-..+|++++..+
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhHHHHhhCccceehhh
Confidence 32 23333455666666554
No 98
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.06 E-value=9.1e-05 Score=86.16 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++..........++. +. .+...+...+ ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~--~~~~~~~~~~-~~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN--ASDERGIDVI-RNKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec--cccccchHHH-HHHHH
Confidence 45899999999999998643 3445789999999999999999997643221111221 10 1111111111 11112
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE- 337 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~- 337 (1382)
++... .+. ....+-++|+|+++.. +..+.+........+.+++|+++... .+...
T Consensus 91 ~~~~~-------~~~--------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 91 EFART-------APV--------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred HHHhc-------CCC--------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH
Confidence 21110 000 0123558899998753 23334443333345567787777433 22211
Q ss_pred CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 338 HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 338 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
......+++++++.++....+...+-.....- ..+.+..+++.++|.+--+
T Consensus 150 ~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 12344789999999999888887664322211 1256778889999887653
No 99
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.6e-05 Score=90.10 Aligned_cols=199 Identities=14% Similarity=0.059 Sum_probs=106.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+....... ....+.-.....+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~----------~~pCg~C~sC~~i~~ 84 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVT----------AEPCNKCENCVAINN 84 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC----------CCCCcccHHHHHHhc
Confidence 46899999999999999643 2345577999999999999999998664311100 000000000000000
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
.-.... ...........+..+..+.+... ..+++-++|+|+++.. ...+.|+.......+.+.+|++|-+. .+..
T Consensus 85 ~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 85 NSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPV 164 (546)
T ss_pred CCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhh
Confidence 000000 00000000111111122222211 2346679999999754 44666666555545666666555433 3332
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVF 393 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 393 (1382)
. ......+++++++.++..+.+...+-.... .-..+....|++.++|-+- |+..+
T Consensus 165 tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 165 TILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 234578999999999988888754422111 1112456678888888664 44444
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.05 E-value=0.00011 Score=77.86 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=61.5
Q ss_pred CCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCC
Q 000630 293 ERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENP 368 (1382)
Q Consensus 293 ~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 368 (1382)
+.+-++|+|+++.. +..+.++.......+.+.+|++|++. .+... ......+++.+++.++..+.+.+. +-
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--gi--- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--GI--- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--CC---
Confidence 45668899999764 34556666555556677788777654 22221 123468999999999999999876 21
Q ss_pred CchHHHHHHHHHHHhCCChHH
Q 000630 369 TDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 369 ~~~~~~~~~~i~~~~~g~PLa 389 (1382)
. .+.++.|++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 25688999999998853
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.04 E-value=1.8e-05 Score=85.43 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=87.3
Q ss_pred cccchhHHHHH---HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHH
Q 000630 183 YNVGLDFRIKE---VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 183 ~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
..||-+..+-+ |..++ +.+..+.+.+||++|+||||||+.++..-+.+- ..|+. .+....-..-.+.+
T Consensus 139 dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-----lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-----LSATNAKTNDVRDI 209 (554)
T ss_pred HhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-----EeccccchHHHHHH
Confidence 45555554432 23333 235677888999999999999999998654431 33443 22221111112222
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEE--EeCCCCcc
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIII--TTRDRGAL 335 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~Ili--TTR~~~~~ 335 (1382)
+.+-. -...+..+|..|.+|.|.. ..|-+.|++.. ..|.-++| ||.++...
T Consensus 210 fe~aq----------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 210 FEQAQ----------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQ 264 (554)
T ss_pred HHHHH----------------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccc
Confidence 22211 0123456889999999954 55666666553 57776666 77776432
Q ss_pred c---cCCCccEEEcCCCCHHHHHHHHHH
Q 000630 336 P---EHYVNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 336 ~---~~~~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
- ......++.++.|..++-..++.+
T Consensus 265 ln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 265 LNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 1 123467899999999999888875
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00015 Score=83.48 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=112.4
Q ss_pred ccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc----cccceeeeeccccccCCCCHHHH
Q 000630 180 VAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ----FEHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 180 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+++.+-.. +..... ....+-...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~--------~~~~~~c~~ 91 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL--------ADPDPASPV 91 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc--------CCCCCCCHH
Confidence 44678999999999999997542 34568899999999999999999976442 111100 001111112
Q ss_pred HHHHHHHhhCCC---CCCCCCC----CcccchhhcHHHHHHHHc-----CCcEEEEEcCCCCh--HHHhhHhcCCCcCCC
Q 000630 256 QNKLIFDLSSGN---KVPTENV----PTENVVTANIAEIKNVVR-----ERKVFVVLDDVDDP--SQLNALCGDKEWFSE 321 (1382)
Q Consensus 256 ~~~ll~~l~~~~---~~~~~~~----~~~~~~~~~~~~l~~~l~-----~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~ 321 (1382)
.+.+...-.... ..+.... ...-.+ +.+..+.+.+. +++-++|+|+++.. ...+.++........
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 222211100000 0000000 000011 12233333332 35678999999864 334455544443345
Q ss_pred CCeEEEEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 322 GSRIIITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 322 gs~IliTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
...+|++|... .+... ......+++.+++.++..+++...+.... . ..+.+..+++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~--~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S--DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555555433 33322 12356899999999999999986432111 1 12456789999999998655443
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00012 Score=85.60 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=106.4
Q ss_pred CcccchhHHHHHHHHHhcCCCC--------CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSS--------NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLV 253 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 253 (1382)
..++|-+.-++.|.+.+..+.. -...+.++|++|+|||++|+.+++.+-..... . ..+++ -
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~~Cg~--------C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-PGCGE--------C 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-CCCCC--------C
Confidence 3578999999999999875421 24568899999999999999999875432210 0 00000 0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEE
Q 000630 254 SLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRII 326 (1382)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~Il 326 (1382)
...+.+...-....... .........++ ++.+.+.. .+++-++|+|+++.. .....++.......++..+|
T Consensus 74 ~~C~~~~~~~hpD~~~i-~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 74 RACRTVLAGTHPDVRVV-APEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred HHHHHHhcCCCCCEEEe-ccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 00111110000000000 00000000111 12222222 234457888999864 33445555444445677777
Q ss_pred EEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 327 ITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 327 iTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
++|.+. .+.+. ......+.+++++.++..+.+.... + . . .+.+..++..++|.|.....+
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 777654 33322 2335789999999999999887432 1 1 1 255778999999999755443
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.01 E-value=6.3e-05 Score=94.29 Aligned_cols=167 Identities=22% Similarity=0.269 Sum_probs=95.8
Q ss_pred CcccchhHHHH---HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIK---EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
+.++|.+..+. .+.+.+.. +....+.++|++|+||||+|+.+++.....|. .+. .. ..++..+ +
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-----a~-~~~i~di-r- 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-----AV-LAGVKDL-R- 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-----hh-hhhhHHH-H-
Confidence 45899988874 46666653 34566789999999999999999987655442 111 00 0111111 0
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH--cCCcEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEEE--eCCC
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVV--RERKVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIIIT--TRDR 332 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IliT--TR~~ 332 (1382)
+......+.+ .+++.++||||++. ..+.+.+++.. ..|..++|+ |.+.
T Consensus 95 -----------------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp 148 (725)
T PRK13341 95 -----------------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENP 148 (725)
T ss_pred -----------------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCCh
Confidence 1111111111 24677999999975 44556666543 345555553 3332
Q ss_pred C--cccc-CCCccEEEcCCCCHHHHHHHHHHhhcC------CCCCCchHHHHHHHHHHHhCCChH
Q 000630 333 G--ALPE-HYVNQLYEVQKLDSSRALQLFSYHALG------RENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 333 ~--~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~------~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
. +... ......+++++++.++...++...+-. ... ..-..+..+.|++.+.|..-
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~-v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRK-VDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcc-cCCCHHHHHHHHHhCCCCHH
Confidence 1 1111 112457999999999999999865421 111 11112456677777777643
No 105
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=4.9e-05 Score=89.07 Aligned_cols=195 Identities=14% Similarity=0.015 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-... ...+.. ......+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--~~pCg~----C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG--NEPCNE----CTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC--ccccCC----CcHHHHHHccCCc
Confidence 468999999999999986532 234578999999999999999999764321100 000000 0111111111000
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-CCcccc
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-RGALPE 337 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~~~~~~ 337 (1382)
++..- .........+..+..+.+... ..++.-++|+|+|+.. +.+++|+...........+|++|.+ ..+...
T Consensus 91 dviEI---daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 91 DVLEI---DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred cceee---chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 00000 000001111122222222211 2346678999999763 4577776665544455555545543 334322
Q ss_pred -CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 338 -HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 338 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
......|.+.+++.++..+.+...+-...... ..+....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChHH
Confidence 23356799999999999988886653222111 12567789999999884
No 106
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=5.1e-05 Score=81.98 Aligned_cols=139 Identities=19% Similarity=0.107 Sum_probs=83.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
.+.+.|||..|+|||+|++.++.... ..++.. ......++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~---------------------- 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA---------------------- 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh----------------------
Confidence 45689999999999999998887532 224430 0111111111
Q ss_pred HHHHHHHcCCcEEEEEcCCCCh----HHHhhHhcCCCcCCCCCeEEEEeCC---------CCccccCCCccEEEcCCCCH
Q 000630 285 AEIKNVVRERKVFVVLDDVDDP----SQLNALCGDKEWFSEGSRIIITTRD---------RGALPEHYVNQLYEVQKLDS 351 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~----~~l~~l~~~~~~~~~gs~IliTTR~---------~~~~~~~~~~~~~~l~~L~~ 351 (1382)
+.+ -+|++||++.. +.+-.+.... ...|..||+|++. +++.........+++++++.
T Consensus 86 ------~~~--~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~ 155 (226)
T PRK09087 86 ------AAE--GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDD 155 (226)
T ss_pred ------hhc--CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCH
Confidence 011 27888999542 2222222111 1357789999873 23333344567899999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 352 SRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 352 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
++-.+++.+++-...-.- -.++.+-|++.+.|..-++..+
T Consensus 156 e~~~~iL~~~~~~~~~~l--~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 156 ALLSQVIFKLFADRQLYV--DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhhhhHHHHHHH
Confidence 999999997774322111 1266777888887777666543
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=5.6e-06 Score=68.96 Aligned_cols=58 Identities=29% Similarity=0.232 Sum_probs=27.6
Q ss_pred cccEEeccCccccccccccccCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCC
Q 000630 694 KLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDC 751 (1382)
Q Consensus 694 ~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~ 751 (1382)
+|++|++++|.+....+..|..+++|++|++++|.+...-|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444555554433333344455555555555554444333444455555555555544
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00012 Score=89.73 Aligned_cols=199 Identities=17% Similarity=0.112 Sum_probs=110.5
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+.-++.|.+.+..+. -...+.++|..|+||||+|+.+++.+-.... . .....+.-...+++..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~------~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----I------TATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----C------CCCCCCCCHHHHHHHc
Confidence 468999999999999997532 2345679999999999999999987643210 0 0011111111222211
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
.-.... ..........++..+.++.+... ..+++-++|+|+++.. ...+.|+..+....+..++|++|.+. .+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000000 00000001111122222222111 2356678999999764 45666665555445666666666544 3432
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVF 393 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 393 (1382)
. ......|.+.+++.++..+.+....-...... ..+....|++.++|.+- |+.++
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 23357899999999999999886542211111 12456778999999876 44333
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00011 Score=88.21 Aligned_cols=195 Identities=15% Similarity=0.080 Sum_probs=106.2
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc--cc-eeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE--HR-SFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~-~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
..++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... .. .+. ..+.-.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~---------~C~~C~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK---------TCEQCTNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC---------CCCCChHHHH
Confidence 467999999999988776432 2456789999999999999999997642110 00 000 0000000011
Q ss_pred HHHHhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEe-CCCC
Q 000630 259 LIFDLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITT-RDRG 333 (1382)
Q Consensus 259 ll~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTT-R~~~ 333 (1382)
+........ ...........++.+.++..... ..+++-++|+|+++.. ..++.|+.......+.+.+|++| +.+.
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 100000000 00000011111122222211111 2346678999999874 45666665555445566666544 4444
Q ss_pred ccccC-CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 334 ALPEH-YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 334 ~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
+.... .....+++.+++.++..+.+...+-......+ .+....|++.++|.+-
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSAR 224 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 43321 23467999999999999999877643222111 2456678888988774
No 110
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.3e-05 Score=89.43 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=17.8
Q ss_pred CCCCCcEEEcCCccccccccCCCCCCCCCEEeccCC
Q 000630 1126 LPSSLEEVNVANCFALESICDLSNLKSLKRLNLTNC 1161 (1382)
Q Consensus 1126 ~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~ls~~ 1161 (1382)
+|++|+.|++++|..+..+..+. .+|+.|++++|
T Consensus 154 LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 154 ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 45566666666665444332222 45666666544
No 111
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.98 E-value=0.00016 Score=85.55 Aligned_cols=201 Identities=13% Similarity=0.041 Sum_probs=108.2
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
-..++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.++..+...- ...+- .+.. ...- ..+.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~-~~~~~-~c~~----c~~c----~~~~ 81 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQN-GPDGE-PCNE----CESC----KEIN 81 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCC-CCCC----CHHH----HHHh
Confidence 3568999999999999986432 345678999999999999999998764320 00000 0000 0000 0000
Q ss_pred HHhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-cc
Q 000630 261 FDLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-AL 335 (1382)
Q Consensus 261 ~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~ 335 (1382)
....... ...........+..+..+.+... ..+++-++|+|+++.. .....++.......+.+.+|++|.+.. +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence 0000000 00000000000011111111110 1234558889999764 445555555544456677777775443 22
Q ss_pred cc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHH
Q 000630 336 PE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 336 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
.. ......+++++++.++..+.+...+-......+ .+.+..+++.++|.|..+....
T Consensus 162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 21 123457899999999999988876633222112 2567788999999887655443
No 112
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.98 E-value=2.5e-07 Score=101.71 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=68.1
Q ss_pred cCCCCcceecccCcc-cCCCCCCcc-CCCCCCCEeeccCCCCC---cCchhccCCcccceeecccccCCCCCCCCCCCCc
Q 000630 1057 CNLSSLEELDAQGWR-IGGKIPDDF-EKLSSLEILNLGNNNFC---NLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLE 1131 (1382)
Q Consensus 1057 ~~l~~L~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~Ls~n~~l~~lp~~~~~L~ 1131 (1382)
.++.+|+.|.++.|+ ++..-...+ .+.+.|+.|++..+... .+-..-.+++.|+.|.|++|..+..-.. +
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-----~ 391 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-----R 391 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-----h
Confidence 345566666666554 221111112 23456666666665443 2322235667777777777765433200 0
Q ss_pred EEEcCCccccccccCCCCCCCCCEEeccCCCCCCCCC--cccCccccceeeccCCCCCchhh
Q 000630 1132 EVNVANCFALESICDLSNLKSLKRLNLTNCEKLVDIS--GLESLKSLKWLYMSGCNACSAAV 1191 (1382)
Q Consensus 1132 ~L~l~~c~~l~~~~~l~~l~~L~~L~ls~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~ 1191 (1382)
.+.. .-..+..|..+.+++|+.+.+.. .+..+++|+.+++.+|..++...
T Consensus 392 ~l~~----------~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 392 HLSS----------SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhh----------ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 0000 12356778888999998887655 57778889999998887654443
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2e-07 Score=97.56 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=58.9
Q ss_pred ccccccccccCc--cCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCC-Ccc--cCcccCCCccccccc
Q 000630 815 LKELSFNYSAVE--ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTA-VKN--LPASIGSLSYLKAFS 889 (1382)
Q Consensus 815 L~~L~l~~n~l~--~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~--lp~~l~~l~~L~~L~ 889 (1382)
|++|+++...++ .+...++.|..|+.|.|.++.+...+...+..-.+|+.|+++++. ++. +...+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444443333 222334445555555555555444444444555555555555432 221 112345666777777
Q ss_pred ccCccCCCCCcccc-c-CCCCCcEEecCCCcCc----cCccccCCccccceeeccCCcc
Q 000630 890 VGRCQFLSELPDSI-E-GLASLVELQLDGTSIR----HLPDQIGGLKMLDKLVMRNCLS 942 (1382)
Q Consensus 890 L~~~~~~~~~~~~l-~-~l~~L~~L~L~~n~l~----~l~~~~~~l~~L~~L~l~~~~~ 942 (1382)
|++|.+.......+ . --++|+.|+|+|+.-. .+..-...+|+|..|+|++|..
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 77776554322111 1 1245666666664311 1222223455555555555543
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00023 Score=87.14 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
+.+||-+.-++.|.+++..+. -...+.++|..|+||||+|+.+++.+-..-... .. .......+.-...+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~--~~---~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG--QG---GITATPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc--cc---CCCCCCCCccHHHHHHHc
Confidence 468999999999999997542 345678999999999999999998653210000 00 000001111111111100
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHH--------cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVV--------RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD 331 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~ 331 (1382)
+..... ..-.......++.+++.+ .++.-++|||+|+.. ...+.++..........++|++|.+
T Consensus 90 ----g~h~D~--~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 90 ----GRFVDY--TELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred ----CCCCce--eecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 000000 000000011122222222 234558899999864 4566666655554566677766644
Q ss_pred C-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 332 R-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 332 ~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
. .+... ......++++.++.++..+.+...+-......+ .+..+.|++.++|.+--+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 3 33221 234578999999999999988866532222111 245677888888877443
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=85.50 Aligned_cols=194 Identities=15% Similarity=0.087 Sum_probs=106.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+....... ..+.+.-.....+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~----------~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT----------SDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC----------CCCccccHHHHHHhc
Confidence 468999999999998886432 234678999999999999999998653211100 000011111111110
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
...... ..........++..+.++..... ..+++-++|+|+++.. +..+.|+.......+.+++|++|.+. .+..
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 000000 00000000111111111111110 1235668999999753 34666666665556777777766432 3322
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
. ......+++.+++.++..+.+...+-.....-+ .+.++.|++.++|.+-
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR 212 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMR 212 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 1 124568999999999999998876643222111 2456778889988775
No 116
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=2.5e-06 Score=89.57 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=39.2
Q ss_pred CcccccccccCccCCCCC-cccccCCCCCcEEecCCCcCccCc--cccCCccccceeeccCCccCCcc
Q 000630 882 LSYLKAFSVGRCQFLSEL-PDSIEGLASLVELQLDGTSIRHLP--DQIGGLKMLDKLVMRNCLSLKTL 946 (1382)
Q Consensus 882 l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~ 946 (1382)
+|++..+.+..|.+...- -.....++.+-.|+|+.|+|.+.. +.+.++++|..|.+.++++...+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 456666666666554422 224455666677777777776443 34566777777777777665543
No 117
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=2.6e-07 Score=107.68 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=57.2
Q ss_pred CcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcccccCcccCccccCCCCCceecccccc
Q 000630 909 LVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECK 988 (1382)
Q Consensus 909 L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~ 988 (1382)
|...+.+.|.+..+..++.-++.|+.|+|++|++...- .+..++.|++|||+.|.+..+|..-..-..|+.|+|++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 44444444444444444444455555555555444332 3444555555555555555544422111225555555554
Q ss_pred ccccccccccCCcccceeeccCccCccCC--cccCCCCCCcEEEccCCCC
Q 000630 989 QLEKLPASMGKLKSLVHLLMEETAVTELP--ESFGMLSSLMVLKMKKPSV 1036 (1382)
Q Consensus 989 ~~~~~p~~l~~l~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~~ 1036 (1382)
+... ..+.++++|+.||+++|-+.... ..++.+..|+.|.|.+|.+
T Consensus 244 l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4332 22445555555555555544221 2244444555555555543
No 118
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=0.00011 Score=86.61 Aligned_cols=173 Identities=22% Similarity=0.236 Sum_probs=97.1
Q ss_pred cccCcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeecccccc
Q 000630 179 KVAAYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSG 247 (1382)
Q Consensus 179 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 247 (1382)
...+.+.|++..+++|.+.+.. +-...+-|.++|++|+|||++|++++++.... |+. ..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~-----v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIR-----VV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEE-----ee
Confidence 3345688999999999886632 11234568899999999999999999976533 221 10
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh------------HH----Hh
Q 000630 248 QNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP------------SQ----LN 310 (1382)
Q Consensus 248 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~------------~~----l~ 310 (1382)
...+ ...... ........+.+ .-...+.+|+|||++.. .. +.
T Consensus 198 ----~~~l----~~~~~g-------------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~ 256 (389)
T PRK03992 198 ----GSEL----VQKFIG-------------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLM 256 (389)
T ss_pred ----hHHH----hHhhcc-------------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHH
Confidence 0111 111000 00111111211 12346789999999753 11 22
Q ss_pred hHhcCCCcC--CCCCeEEEEeCCCCcccc-----CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHH
Q 000630 311 ALCGDKEWF--SEGSRIIITTRDRGALPE-----HYVNQLYEVQKLDSSRALQLFSYHALGRENPT-DKFFKISEQIVSL 382 (1382)
Q Consensus 311 ~l~~~~~~~--~~gs~IliTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~ 382 (1382)
.++...... ..+..||.||........ ...+..++++..+.++..++|..+..+...+. .+ ...+++.
T Consensus 257 ~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~ 332 (389)
T PRK03992 257 QLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAEL 332 (389)
T ss_pred HHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHH
Confidence 233222211 235567777765432221 12345799999999999999997764432221 22 3445556
Q ss_pred hCCC
Q 000630 383 TGGL 386 (1382)
Q Consensus 383 ~~g~ 386 (1382)
+.|.
T Consensus 333 t~g~ 336 (389)
T PRK03992 333 TEGA 336 (389)
T ss_pred cCCC
Confidence 6554
No 119
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00027 Score=85.69 Aligned_cols=196 Identities=12% Similarity=0.017 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-..-... ..+.+.-...+.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~----------~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS----------ANPCNDCENCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------cccCCCCHHHHHHhc
Confidence 468999999999999996532 234567999999999999999999763211000 000000000111100
Q ss_pred HhhCC-CCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSG-NKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~-~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
.-... ...........++..+..+.+.- -..++.-++|+|+|+.. +..+.++..+....+.+++|++|.+. .+..
T Consensus 85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~ 164 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164 (509)
T ss_pred CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence 00000 00000000011111111111110 01245568889999863 45666665555555677777766543 2222
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
. ......+++++++.++..+.+...+-......+ .+....|++.++|.+.-+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 1 123457899999999988776654422221111 144667888888877533
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00029 Score=85.54 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+....... ....+.-...+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~----------~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT----------GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC----------CCCCcccHHHHHHhc
Confidence 45789888888888888643 2246777899999999999999998764211000 000111111111111
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-----HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-C
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-----VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-R 332 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-----l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~ 332 (1382)
...... ......... .+ .++.+.+. ..+++-++|+|+++.. +....|+.......+...+|++|.+ .
T Consensus 85 g~hpDv~eId~a~~~~---Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 85 GMHVDVVEIDGASNRG---ID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred CCCCceEEEecccccC---HH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 000000 000000000 11 11112221 2345678999999764 4455666554443455666666654 3
Q ss_pred Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 000630 333 GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP-LALEVFGAFL 397 (1382)
Q Consensus 333 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~g~~L 397 (1382)
.+... ......++++.++.++..+.+...+....... ..+.++.|++.++|.+ .|+..+...+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33321 12345889999999999988886554322111 1256778888999865 6777766544
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.0002 Score=85.75 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=106.4
Q ss_pred CcccchhHH--HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc--cceeeeeccccccCCCCHHHHHH
Q 000630 182 AYNVGLDFR--IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE--HRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 182 ~~~vGr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
..++|...+ .................+.|+|..|.|||+|++++++.+..... .++++. ...+..
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~ 184 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFAR 184 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHH
Confidence 345566544 23333333222222356789999999999999999997654322 223332 233444
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh----HHHhhHhcCCCc-CCCCCeEEEEeCCC
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP----SQLNALCGDKEW-FSEGSRIIITTRDR 332 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~----~~l~~l~~~~~~-~~~gs~IliTTR~~ 332 (1382)
.+...+... ....+.+++.++ ..-+||+||+... ...+.+...+.. ...|..||+|+...
T Consensus 185 ~~~~~l~~~--------------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 185 KAVDILQKT--------------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHh--------------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 444443310 012233444444 3447888999542 112222221111 13455788887533
Q ss_pred ---------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHhh
Q 000630 333 ---------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGAF 396 (1382)
Q Consensus 333 ---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~~ 396 (1382)
++..+....-.+.+++++.++..+++.+++-.......-..+...-|++.++|.|-.+.-+...
T Consensus 250 P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 250 PELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 1222233455788999999999999998774321101122367888999999999877666543
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00053 Score=83.79 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=105.5
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++.+....... . .+.+.-.....+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~--------~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--A--------TPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--C--------CCCCCCHHHHHHhc
Confidence 468999999999999987432 235567999999999999999998764321100 0 00000000011100
Q ss_pred HhhCCCCCCC--CCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEeCCC
Q 000630 262 DLSSGNKVPT--ENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITTRDR 332 (1382)
Q Consensus 262 ~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTTR~~ 332 (1382)
+..... -+.......++ ++.+.+.. .+++-++|+|+++... ..+.++.......+.+.+|++|.+.
T Consensus 85 ----~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 85 ----GRFVDLIEVDAASNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred ----CCCCceeEeeccccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 000000 00000000111 11111111 2456789999998643 3555655555445566666666443
Q ss_pred -Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000630 333 -GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVF 393 (1382)
Q Consensus 333 -~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 393 (1382)
.+... ......++++.++.++..+.+...+-...... ..+.++.|++.++|.+- |+..+
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33221 12256899999999999988876542211111 12456778999999775 44443
No 123
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00025 Score=85.61 Aligned_cols=200 Identities=17% Similarity=0.112 Sum_probs=105.5
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. ....+--...+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~------~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD------GDCCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC------CCCCcccHHHHHHHc
Confidence 46899999999999998643 2345678999999999999999999764211 111 001111111111111
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-CCccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-RGALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~~~~~ 336 (1382)
...... ..........++..+....+... ...++-++|+|+++.. .....|+.......+.+.+|++|.. ..+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000 00000000111111111111110 1123446999999763 4455555544433455666655543 33322
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVFG 394 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~g 394 (1382)
. ......+++.+++.++....+...+-.....-+ .+.+..+++.++|.+- |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 223568999999999999888865532211111 2456778888988664 444433
No 124
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00022 Score=75.40 Aligned_cols=263 Identities=16% Similarity=0.142 Sum_probs=134.4
Q ss_pred CcccchhHHHHHHHHHhcC---CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDV---KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
..|||-++-.+++.=.+.. .....--|.++|++|.||||||.-+++.+...+... .+.....+.++..+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDlaai--- 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLAAI--- 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHHHH---
Confidence 5699999988888766643 223455788999999999999999999876543211 00001112122111
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH-HHhhHh-cCCCcC--------CCCCe----
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS-QLNALC-GDKEWF--------SEGSR---- 324 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~-~l~~l~-~~~~~~--------~~gs~---- 324 (1382)
+.. |+..- .+.+|.+.... .++.++ +....+ ++++|
T Consensus 98 -Lt~----------------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 98 -LTN----------------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred -Hhc----------------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEec
Confidence 111 12222 23345543311 111111 000000 23333
Q ss_pred -------EEEEeCCCCccccC--CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHHHh
Q 000630 325 -------IIITTRDRGALPEH--YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGA 395 (1382)
Q Consensus 325 -------IliTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~g~ 395 (1382)
|=-|||.-.+.... ...-+.+++-.+.+|-.+...+.|-.-.- +-..+-+.+|+++..|-|--. .+
T Consensus 148 dLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIA---nR 222 (332)
T COG2255 148 DLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIA---NR 222 (332)
T ss_pred cCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHH---HH
Confidence 44588855332211 12336788888999999888877632111 111266889999999999543 33
Q ss_pred hhCCCCCHHHHHHHHHH--HHhcCCchHHHHHHhhccCCCccccceeeeeecccccCCCCHHHHHHHHhhCCCChhhhH-
Q 000630 396 FLFDKRRITEWEDALEK--LRKIRPNNLQEVLKISFDGLDQQDKCIFLDIACLFVKMGMNKEDAIDILKGCGFRAEIAI- 472 (1382)
Q Consensus 396 ~L~~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~~~l~~~~~~~g~~~~~~l- 472 (1382)
.|+. +.++..+-.. +...........|.+--.+|+...++.+..+.-.+.+.++..+.+...+..+...-++.+
T Consensus 223 LLrR---VRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~E 299 (332)
T COG2255 223 LLRR---VRDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIE 299 (332)
T ss_pred HHHH---HHHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHh
Confidence 3332 1111111000 000000112223333334556655665555555555566666666655543322222222
Q ss_pred HHHhcccceEEecCCeEE
Q 000630 473 VVLMKKSLIKITEDDTLW 490 (1382)
Q Consensus 473 ~~L~~~sLi~~~~~~~~~ 490 (1382)
--|++.++++....|++.
T Consensus 300 PyLiq~gfi~RTpRGR~a 317 (332)
T COG2255 300 PYLIQQGFIQRTPRGRIA 317 (332)
T ss_pred HHHHHhchhhhCCCccee
Confidence 247888888877777653
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00041 Score=83.08 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=98.8
Q ss_pred CcccchhHHHH--HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc-c-ceeeeeccccccCCCCHHHHHH
Q 000630 182 AYNVGLDFRIK--EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE-H-RSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 182 ~~~vGr~~~l~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
.+++|-..+.. ...+.... .....-+.|+|.+|+|||+||+++++.+...++ . ++|+. ..+...
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~ 173 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLN 173 (440)
T ss_pred ccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHH
Confidence 34457555432 33333322 222445889999999999999999998766543 2 33443 123334
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh---HHH-hhHhcCCC-cCCCCCeEEEEeC-C
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP---SQL-NALCGDKE-WFSEGSRIIITTR-D 331 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~---~~l-~~l~~~~~-~~~~gs~IliTTR-~ 331 (1382)
.+...+... ....+++..+.+.-+||+||++.. ... +.+...+. ....|..||+||. .
T Consensus 174 ~~~~~~~~~----------------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 174 DLVDSMKEG----------------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHhcc----------------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 444333211 122334444444568899999642 111 12211111 0124557888885 2
Q ss_pred CC--------ccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000630 332 RG--------ALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 332 ~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 391 (1382)
+. +.......-.+++++.+.++-.+++.+.+-.....-+ .++...|++.+.|.--.+.
T Consensus 238 p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 238 PQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhccccCHHHHH
Confidence 21 2222233457899999999999999877643222111 2567777777776554443
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.77 E-value=0.00033 Score=83.66 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=88.1
Q ss_pred cCcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc-----cceeeeeccc
Q 000630 181 AAYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE-----HRSFISNVRE 244 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~ 244 (1382)
-..+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+. ...|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 34577899999988876531 1123456889999999999999999998755421 223332 111
Q ss_pred cccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh---------HH-----H
Q 000630 245 TSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP---------SQ-----L 309 (1382)
Q Consensus 245 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~---------~~-----l 309 (1382)
. .++..... .............++. -.+++++|+||+++.. .+ +
T Consensus 260 ----~--------eLl~kyvG---------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il 318 (512)
T TIGR03689 260 ----P--------ELLNKYVG---------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVV 318 (512)
T ss_pred ----h--------hhcccccc---------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHH
Confidence 0 01000000 0000011111222221 1347899999999742 11 2
Q ss_pred hhHhcCCCcCC--CCCeEEEEeCCCCccc-c----CCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 310 NALCGDKEWFS--EGSRIIITTRDRGALP-E----HYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 310 ~~l~~~~~~~~--~gs~IliTTR~~~~~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
..++...+... .+..||.||.....+. . ...+..++++..+.++..++|..+.
T Consensus 319 ~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 319 PQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 23333322222 3444555664433222 1 1235579999999999999998765
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00087 Score=81.95 Aligned_cols=201 Identities=17% Similarity=0.097 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+....... + . ..+.-...+.+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~--------pCg~C~~C~~i~~ 81 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-T--------PCGVCESCVALAP 81 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-C--------cccccHHHHHhhc
Confidence 468999999999999997432 234568999999999999999998764211000 0 0 0000000111110
Q ss_pred HhhCCCC---CCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEEEeCC-CCc
Q 000630 262 DLSSGNK---VPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIIITTRD-RGA 334 (1382)
Q Consensus 262 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IliTTR~-~~~ 334 (1382)
.-..... .........++..+..+.+... ..+++-++|+|+++. .+..+.|+..+....+...+|++|.+ ..+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000000 0000000111111111111111 124566889999975 34566666655555566666665543 333
Q ss_pred ccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHHHh
Q 000630 335 LPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVFGA 395 (1382)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~g~ 395 (1382)
... ......|++..++.++..+.+...+-......+ .+.+..|++..+|-+- |+..+-.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 223568999999999998888765532221111 2456778889999774 4444433
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.00069 Score=81.11 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=98.7
Q ss_pred CcccchhHHH--HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc-c-ceeeeeccccccCCCCHHHHHH
Q 000630 182 AYNVGLDFRI--KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE-H-RSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 182 ~~~vGr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
.+.+|.+... ..+.++..........+.|+|..|+|||+||+++++.+..+.. . ++|+. ...+..
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~ 179 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTN 179 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHH
Confidence 3456766653 2233333221122356789999999999999999998766542 2 23332 122233
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH---H-HhhHhcCCCc-CCCCCeEEEEeCCC
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS---Q-LNALCGDKEW-FSEGSRIIITTRDR 332 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gs~IliTTR~~ 332 (1382)
.+...+... ....+.+.+++ .-+|||||++... . .+.+...+.. ...|..||||+...
T Consensus 180 ~~~~~~~~~----------------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 180 DFVNALRNN----------------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHcC----------------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 344333211 12233333433 3378899996421 1 1122211111 12455688887632
Q ss_pred ---------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000630 333 ---------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 333 ---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 391 (1382)
.+.........+++++.+.++-.+++...+-......+ .+....|++.+.|..-.+.
T Consensus 243 p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 243 PKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP--DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 12223333457899999999999999887743222112 2566777777777665443
No 129
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.73 E-value=4.2e-05 Score=77.48 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=57.7
Q ss_pred cEEEccccccc-cchHHHHHHHHHHhC-CcEEEEeCCCCCC--CCcchHHHHHHHHhcceEEEEecCCc
Q 000630 16 DVFLSFRGEDT-RDTITRNLYNSLHDH-GVRVFKDDYGLAR--GDEIAPSLIDAIYDSAASIIILSPNY 80 (1382)
Q Consensus 16 dvfis~~~~d~-~~~~~~~l~~~l~~~-g~~~~~d~~~~~~--g~~~~~~~~~~i~~s~~~i~v~s~~y 80 (1382)
-|||||++++. -..+|..|++.|++. |+.|.+|.|+... +..+.+++.+++++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999998764 337899999999999 9999999999854 88899999999999999999999765
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.71 E-value=0.00043 Score=83.93 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=99.9
Q ss_pred cccchhHH--HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc--ceeeeeccccccCCCCHHHHHHH
Q 000630 183 YNVGLDFR--IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH--RSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 183 ~~vGr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
+.+|...+ .....++..........+.|+|.+|+|||+||+++++.+..++.. +.|+. ...+...
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~ 192 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTND 192 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 44565554 333344433222234568899999999999999999988766532 23332 1222333
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh----HHHhhHhcCCCc-CCCCCeEEEEeCCCC
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP----SQLNALCGDKEW-FSEGSRIIITTRDRG 333 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~----~~l~~l~~~~~~-~~~gs~IliTTR~~~ 333 (1382)
+...+... ....+.+.++ +.-+|||||++.. ...+.+...+.. ...|..|||||....
T Consensus 193 ~~~~~~~~----------------~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 193 FVNALRNN----------------TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHcC----------------cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 33333210 1233344444 3447889999542 111222221110 124556888886431
Q ss_pred ---------ccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000630 334 ---------ALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 334 ---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 391 (1382)
+.........+++++.+.++-.+++...+-.....-+ .+....|++.+.|..-.+.
T Consensus 256 ~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 256 KELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP--DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHcCcCCCHHHHH
Confidence 1223334457999999999999999987743221111 2567778887777765443
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00046 Score=84.96 Aligned_cols=195 Identities=15% Similarity=0.109 Sum_probs=105.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc--cccceeeeeccccccCCCCHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ--FEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
..+||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .+...|.....+ ..+.-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHHHHHH
Confidence 46899999999999988643 223457799999999999999999976431 111112211101 11111111111
Q ss_pred HHHhhCCCCCCCCC--CCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeC
Q 000630 260 IFDLSSGNKVPTEN--VPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 260 l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR 330 (1382)
.. +....... .......++ +..+.+.+ .+++-++|+|+++.. ...+.|+.......+.+.+|++|.
T Consensus 91 ~~----g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 91 DA----GTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred hc----cCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 11 00000000 000000111 11222222 234557899999764 345566655554455566555553
Q ss_pred -CCCcccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 331 -DRGALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 331 -~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
...+... ......+++.+++.++....+...+-...... ..+.++.|++.++|..-
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 3333322 23467899999999998888876543211111 12567789999999654
No 132
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.001 Score=78.62 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=101.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc--------cccceeeeeccccccCCCCHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ--------FEHRSFISNVRETSGQNDGLV 253 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~~ 253 (1382)
..++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++-.+ .....++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----AASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec----cccCCCHH
Confidence 46799999999999999643 234578899999999999999998876431 111111100 00011111
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeC-
Q 000630 254 SLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTR- 330 (1382)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR- 330 (1382)
.+ +.++.++.. . -..+++-++|+|+++.. ..++.+..........+.+|++|.
T Consensus 92 ~i-~~l~~~~~~--------~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~ 147 (367)
T PRK14970 92 DI-RNLIDQVRI--------P---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTE 147 (367)
T ss_pred HH-HHHHHHHhh--------c---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCC
Confidence 11 111111110 0 01234557999999753 335555443333344556665553
Q ss_pred CCCcccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 331 DRGALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 331 ~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
...+... ......++++++++++....+...+......-+ .+.+..+++.++|.+-
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALR 204 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 3333322 123457999999999999888876643222111 2567778888888665
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.70 E-value=0.00033 Score=78.29 Aligned_cols=129 Identities=12% Similarity=0.134 Sum_probs=68.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhccc--ccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQF--EHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVT 281 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 281 (1382)
...-+.++|++|+||||+|+.+++.+...- ....++. ++. .. +......
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-----~~~----~~----l~~~~~g---------------- 91 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-----VER----AD----LVGEYIG---------------- 91 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-----ecH----HH----hhhhhcc----------------
Confidence 345678999999999999999998754211 1112221 100 11 1111100
Q ss_pred hcHHHHHHHHcC-CcEEEEEcCCCC----------hHHHhhHhcCCCcCCCCCeEEEEeCCCCc----------cccCCC
Q 000630 282 ANIAEIKNVVRE-RKVFVVLDDVDD----------PSQLNALCGDKEWFSEGSRIIITTRDRGA----------LPEHYV 340 (1382)
Q Consensus 282 ~~~~~l~~~l~~-~r~LlVLDdv~~----------~~~l~~l~~~~~~~~~gs~IliTTR~~~~----------~~~~~~ 340 (1382)
+....+++.+.. ..-+|++|+++. .+.++.+............+|+++..... ... .
T Consensus 92 ~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f 169 (261)
T TIGR02881 92 HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--F 169 (261)
T ss_pred chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--c
Confidence 001111222211 234888999964 23455555443332333345555543221 111 2
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhc
Q 000630 341 NQLYEVQKLDSSRALQLFSYHAL 363 (1382)
Q Consensus 341 ~~~~~l~~L~~~ea~~Lf~~~a~ 363 (1382)
...++++.++.+|-.+++.+.+-
T Consensus 170 ~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred ceEEEECCCCHHHHHHHHHHHHH
Confidence 34689999999999999986663
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00045 Score=81.97 Aligned_cols=199 Identities=15% Similarity=0.069 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc--cccceeeeeccccccCCCCHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ--FEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
..++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... +....|.... ....+.-...+++
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~----~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV----TEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC----CCCCCCCHHHHHH
Confidence 468999999999999886432 23457799999999999999999976431 1111111100 0011111111111
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeC-C
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTR-D 331 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR-~ 331 (1382)
......... .. +.......+ .+..+.+.+ .+++-++|+|+++.. ..++.++.......+.+.+|++|. .
T Consensus 91 ~~~~~~n~~-~~-~~~~~~~id-~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 91 DAGTSLNIS-EF-DAASNNSVD-DIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred hcCCCCCeE-ee-cccccCCHH-HHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 110000000 00 000000011 122222222 235568899999764 356666655554456777666653 3
Q ss_pred CCcccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 332 RGALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 332 ~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
..+... ......++++++++++..+.+...+-.... .-..+.++.+++.++|.+--+
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 333321 112457899999999998888765522111 111256788999999977533
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00062 Score=83.78 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+.......- ... .....+.-.-.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~-~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGP-TIDLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCC-ccccCcccHHHHHHhc
Confidence 468999999999999997542 2446779999999999999999997643221000 000 0000010011111111
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEe-CCCCccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITT-RDRGALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTT-R~~~~~~ 336 (1382)
.-.... ..........+++.+.++.+... ...++-++|+|+++.. ...+.|+..+....+.+.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 000000 00000001111111111111110 1234567899999764 34666665555555677776655 3333332
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALE 391 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 391 (1382)
. ......+++..++.++....+...+-......+ .+.++.|++.++|.+.-+.
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 2 123568999999999999999876532221111 2567788999999886443
No 136
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.001 Score=84.69 Aligned_cols=194 Identities=13% Similarity=0.027 Sum_probs=104.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+....... ....+.-...+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~----------~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT----------STPCGECDSCVALAP 83 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC----------CCCCcccHHHHHHHc
Confidence 468999999999999997532 234578999999999999999999764211000 000000000111100
Q ss_pred HhhCCCC---CCCCCCCcccchhhcHHHHH-HHHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-CCc
Q 000630 262 DLSSGNK---VPTENVPTENVVTANIAEIK-NVVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-RGA 334 (1382)
Q Consensus 262 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~-~~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~~~ 334 (1382)
.-..... .........+++.+..+.+. .-..+++-++|||+++.. ...+.|+..+......+.+|++|.+ ..+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000 00000000111111111110 112345567889999864 4455666555555566676666643 334
Q ss_pred ccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 335 LPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
... ......|++..++.++..+++.+..-...... ..+....|++.++|.+.
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 332 23467899999999999888876442211111 12456678889999774
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.0015 Score=72.09 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=101.5
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcE-EEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVL-VLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~-vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
.+.+.+|+.++..+..++...+..++ .|.|+|-.|.|||.+.+++.+... ...+|+. .-+.+....+..+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n-----~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN-----CVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee-----hHHhccHHHHHHHH
Confidence 46789999999999999986655444 458999999999999999999763 2356776 44456778888888
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHH--HHc--CCcEEEEEcCCCChHHHhh-----HhcCCCcCCCCCeEEEEeC
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKN--VVR--ERKVFVVLDDVDDPSQLNA-----LCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~--~~r~LlVLDdv~~~~~l~~-----l~~~~~~~~~gs~IliTTR 330 (1382)
+.++......+........+..+.+..+.+ ... ++.++||||+++...+.++ +...........-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 888742111000000111223333333333 122 3589999999976543221 1111000012233444443
Q ss_pred CC--Cc-cccCC--CccEEEcCCCCHHHHHHHHHH
Q 000630 331 DR--GA-LPEHY--VNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 331 ~~--~~-~~~~~--~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
.. .. ...++ ...++..+..+.+|..+++.+
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 21 11 11112 223677888999999999873
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0013 Score=79.04 Aligned_cols=187 Identities=15% Similarity=0.080 Sum_probs=105.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc-ccc--ceeeeeccccccCCCCHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEH--RSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~--~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
..++|-+...+.|...+..+. -.....++|..|+||||+|+.+++.+-.. ... .+..+ .....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C-------------~~C~~ 79 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC-------------IQCQS 79 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc-------------HHHHH
Confidence 468999999999999996442 34566899999999999999999876321 100 00000 00000
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH--------cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEE
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVV--------RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIIT 328 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliT 328 (1382)
+........ .... ... ...++.+++.. .+++-++|+|+++.. +..++|+.......+.+++|++
T Consensus 80 ~~~~~h~dv-~eld-aas----~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 80 ALENRHIDI-IEMD-AAS----NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred HhhcCCCeE-EEec-ccc----ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 000000000 0000 000 00111111111 135568899999764 3455666555555667777777
Q ss_pred eCCCC-cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 329 TRDRG-ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 329 TR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
|.+.. +... ......+++.+++.++..+.+...+-......+ .+.++.|++.++|.+--+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDT 215 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 76542 2211 123568999999999999888765532221111 256778999999988543
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0012 Score=81.68 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=106.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-..-....+- .+..+. ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~-----------~~-- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECI-----------EN-- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHH-----------Hh--
Confidence 46899999999999999743 2345677999999999999999998653211100000 000000 00
Q ss_pred HhhCCCC---CCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEe-CCCCc
Q 000630 262 DLSSGNK---VPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITT-RDRGA 334 (1382)
Q Consensus 262 ~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTT-R~~~~ 334 (1382)
...... ..........++.+.++.+... ..+++-++|+|+++.. ..+.+|+..+....+...+|++| +...+
T Consensus 83 -~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 83 -VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred -hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 000000 0000000011111112221111 1245668899999754 45666666555545555655555 43444
Q ss_pred ccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH-HHHHH
Q 000630 335 LPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL-ALEVF 393 (1382)
Q Consensus 335 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 393 (1382)
... ......+++.+++.++..+.+...+-...... ..+.++.+++.++|-+- |+..+
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 23456899999999999988876542211111 12457788899988664 44443
No 140
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.63 E-value=6.9e-05 Score=84.62 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=60.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc-ccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcc---cchh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVD-QFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTE---NVVT 281 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~---~~~~ 281 (1382)
..++|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++.+...+.... .+.+.. ....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st----~d~~~~~~~~~a~ 242 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVAST----FDEPAERHVQVAE 242 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEEC----CCCCHHHHHHHHH
Confidence 46789999999999999999997654 69999999865541 2367778877764332110 001111 1111
Q ss_pred hcHHHHHHH-HcCCcEEEEEcCCCChH
Q 000630 282 ANIAEIKNV-VRERKVFVVLDDVDDPS 307 (1382)
Q Consensus 282 ~~~~~l~~~-l~~~r~LlVLDdv~~~~ 307 (1382)
...+..+.. -.+++++|++|++....
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChHHHH
Confidence 222222222 25699999999996543
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.63 E-value=0.00042 Score=74.19 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=73.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
+.+.|||++|+|||+||+++++.... .++.. .. .. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~-------~~-----------------------~~-----~---- 80 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD-------IF-----------------------FN-----E---- 80 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch-------hh-----------------------hc-----h----
Confidence 56889999999999999987765421 22210 00 00 0
Q ss_pred HHHHHHcCCcEEEEEcCCCChHH--HhhHhcCCCcCCCCCeEEEEeCCCCc-------cccCCCccEEEcCCCCHHHHHH
Q 000630 286 EIKNVVRERKVFVVLDDVDDPSQ--LNALCGDKEWFSEGSRIIITTRDRGA-------LPEHYVNQLYEVQKLDSSRALQ 356 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~~~~--l~~l~~~~~~~~~gs~IliTTR~~~~-------~~~~~~~~~~~l~~L~~~ea~~ 356 (1382)
+..+ ..-++++||++...+ +-.+..... ..|..||+|++.... .++....-.+++++++.++-.+
T Consensus 81 ---~~~~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~ 154 (214)
T PRK06620 81 ---EILE-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKI 154 (214)
T ss_pred ---hHHh-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHH
Confidence 0011 234678899975432 222211111 356789999874422 1122234479999999999888
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 357 LFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 357 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
++.+.+-...-.. -.++.+-|++++.|---.
T Consensus 155 ~l~k~~~~~~l~l--~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 155 LIFKHFSISSVTI--SRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHccCCHHH
Confidence 8876653211111 125566666666554443
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0013 Score=78.42 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=93.4
Q ss_pred CcccchhHHHH--HHHHHhcC---CC-CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIK--EVIRLLDV---KS-SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~--~l~~~L~~---~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
..++|-..++. .+.++... .. .....+.|+|..|+|||+||+++++.+......++++. ...+
T Consensus 112 nFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f 180 (445)
T PRK12422 112 NFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELF 180 (445)
T ss_pred ceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHH
Confidence 34457666643 33333321 11 12356789999999999999999998765433344443 1223
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH----HHhhHhcCCCc-CCCCCeEEEEeC
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS----QLNALCGDKEW-FSEGSRIIITTR 330 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~----~l~~l~~~~~~-~~~gs~IliTTR 330 (1382)
...+...+... ....++..++ ..-+|++||+.... ..+.+...+.. ...|..||+||.
T Consensus 181 ~~~~~~~l~~~----------------~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 181 TEHLVSAIRSG----------------EMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred HHHHHHHHhcc----------------hHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 33333333210 1123344333 34578889985421 11122111110 124567888885
Q ss_pred CC---------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000630 331 DR---------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGL 386 (1382)
Q Consensus 331 ~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 386 (1382)
.. .+.......-.+++++++.++..+++.+++-...-.-+ .+...-|++.+.+.
T Consensus 244 ~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~--~evl~~la~~~~~d 306 (445)
T PRK12422 244 CAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIE--ETALDFLIEALSSN 306 (445)
T ss_pred CCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCC
Confidence 42 22223334468899999999999999877643221111 24455555555543
No 143
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00073 Score=84.18 Aligned_cols=197 Identities=15% Similarity=0.100 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+....... .....+.-...+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccCHHHHHHhc
Confidence 468999999999999887532 235567999999999999999998764211100 0001111112222211
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-C
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-G 333 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~ 333 (1382)
...... ... ........++ ++.+.+.+ ..++-++|+|+++.. +..+.|+..+....+.+.+|++|.+. .
T Consensus 86 ~~~~d~-~~i-~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 86 GSAVDV-IEM-DAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred CCCCeE-EEE-eccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 110000 000 0000000111 11222221 235668999999754 44666665554445566777666433 2
Q ss_pred cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 334 ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 334 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
+... ......++++.++..+....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 3221 123457889999999998888876533221111 256778999999988654443
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.61 E-value=0.00044 Score=80.10 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=83.3
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
-..++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+. .+. .....+. ..+
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-----~~~-~~~~~i~-~~l 88 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-----GSD-CRIDFVR-NRL 88 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-----cCc-ccHHHHH-HHH
Confidence 356899999999999998643 2346777799999999999999998763221 1222 111 1121111 111
Q ss_pred HHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh---HHHhhHhcCCCcCCCCCeEEEEeCCCCcc-c
Q 000630 261 FDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP---SQLNALCGDKEWFSEGSRIIITTRDRGAL-P 336 (1382)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~---~~l~~l~~~~~~~~~gs~IliTTR~~~~~-~ 336 (1382)
...... ..+...+-++|+||++.. +..+.+.........++++|+||...... +
T Consensus 89 ~~~~~~----------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 89 TRFAST----------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHh----------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchH
Confidence 111100 001134557889999754 22222322233335677899888654321 1
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFS 359 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~ 359 (1382)
. ......+.++..+.++..+++.
T Consensus 147 ~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 147 PLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred HHHhhceEEEeCCCCHHHHHHHHH
Confidence 1 1223467777778887776665
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.60 E-value=0.0022 Score=67.99 Aligned_cols=52 Identities=25% Similarity=0.350 Sum_probs=40.0
Q ss_pred cCcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 181 AAYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.+.++|.|...+.|.+-... ......-|.+||..|.|||++++++.+++..+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 45789999999988653321 22345567789999999999999999988764
No 146
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.60 E-value=0.0016 Score=78.05 Aligned_cols=175 Identities=15% Similarity=0.077 Sum_probs=89.9
Q ss_pred CcccchhHHHHHHHHHhc---C-----CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHH
Q 000630 182 AYNVGLDFRIKEVIRLLD---V-----KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLV 253 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~---~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 253 (1382)
..+.|.+...+.+.+... . +-...+-|.++|++|.|||.+|+++++.+.-.| +..+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH---------
Confidence 456788776666654321 0 112356788999999999999999999865322 1111110
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH--------------HHhhHhcCCCcC
Q 000630 254 SLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS--------------QLNALCGDKEWF 319 (1382)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~--------------~l~~l~~~~~~~ 319 (1382)
+..... ........+.+...-...+++|++|+++..- .+..++......
T Consensus 295 -----l~~~~v------------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~ 357 (489)
T CHL00195 295 -----LFGGIV------------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK 357 (489)
T ss_pred -----hccccc------------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC
Confidence 100000 0001111111222223478999999986421 011122111111
Q ss_pred CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 000630 320 SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP 387 (1382)
Q Consensus 320 ~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1382)
..+.-||.||.+...+. ....+..+.++.-+.++-.++|..+.-+....... ....+.+++.+.|+-
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 23344566776543222 11245688899999999999998776432211100 012345666665543
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.001 Score=80.49 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=95.8
Q ss_pred cccchhHHH--HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc--cceeeeeccccccCCCCHHHHHHH
Q 000630 183 YNVGLDFRI--KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE--HRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 183 ~~vGr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
+++|-..++ .....+..........+.|+|..|.|||.|+.++++.....+. .++|+. ...+..+
T Consensus 290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~e 358 (617)
T PRK14086 290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNE 358 (617)
T ss_pred hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHH
Confidence 345665542 2333333321222345889999999999999999998765432 233443 2233334
Q ss_pred HHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh---HHH-hhHhcCCCc-CCCCCeEEEEeCCC-
Q 000630 259 LIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP---SQL-NALCGDKEW-FSEGSRIIITTRDR- 332 (1382)
Q Consensus 259 ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~---~~l-~~l~~~~~~-~~~gs~IliTTR~~- 332 (1382)
+...+... ....+++.+++ -=+|||||++.. +.+ +.|...+.. ...|..|||||+..
T Consensus 359 l~~al~~~----------------~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 359 FINSIRDG----------------KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHhc----------------cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 43333211 12233444433 347888999542 111 122211111 13466789988743
Q ss_pred --------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 333 --------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 333 --------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
.+...+...-.++++..+.+.-.+++.+++-...-..+ .++++-|++.+.+..-
T Consensus 422 ~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~--~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 422 KQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAP--PEVLEFIASRISRNIR 483 (617)
T ss_pred HhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhccCCHH
Confidence 12233344568999999999999999987743322111 2556666666555433
No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.002 Score=77.36 Aligned_cols=195 Identities=13% Similarity=0.049 Sum_probs=103.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+...-.. .+. ...+.-.....+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~-----~~c~~c~~C~~i~~ 86 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPT----EDQ-----EPCNQCASCKEISS 86 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcc----cCC-----CCCcccHHHHHHhc
Confidence 568999999999999996432 23567789999999999999999976432000 000 00000000000000
Q ss_pred HhhCC-CCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCC-CCccc
Q 000630 262 DLSSG-NKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRD-RGALP 336 (1382)
Q Consensus 262 ~l~~~-~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~-~~~~~ 336 (1382)
.-... ............+..+..+.+.- -..+++-++|+|+++.. +..+.|+.......+...+|++|.+ ..+..
T Consensus 87 ~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 87 GTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred CCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 00000 00000000000111111111110 01245678899999754 3445555554444556667766643 33332
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
. ......++++++++++..+.+...+-...... ..+.++.|++.++|.+-
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLR 217 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 2 12356899999999999988876553221111 12567788999998764
No 149
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.57 E-value=7.7e-05 Score=81.22 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhc-ccccceeeeeccccccCCCCHHHHHHHHHHHhhCC-CCCCCCCCCcccchhh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVD-QFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSG-NKVPTENVPTENVVTA 282 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~~~ 282 (1382)
-..++|.|++|+|||||++++++.... +|+..+|+..+.+ ...++.++++.+...+... .+.+. .........
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---r~~ev~el~~~I~~~~v~~~~~~~~--~~~~~~~~~ 90 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---RPEEVTDMQRSVKGEVIASTFDEPP--ERHVQVAEM 90 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---CCccHHHHHHHhccEEEEecCCCCH--HHHHHHHHH
Confidence 457889999999999999999997654 6888889874433 1357888888873332211 00000 000011112
Q ss_pred cHHHHHHH-HcCCcEEEEEcCCCCh
Q 000630 283 NIAEIKNV-VRERKVFVVLDDVDDP 306 (1382)
Q Consensus 283 ~~~~l~~~-l~~~r~LlVLDdv~~~ 306 (1382)
..+..+.. -.++++++++|++...
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 22333322 2468999999998653
No 150
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.57 E-value=0.0027 Score=68.23 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=108.9
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc--ccccceeeeeccccccCCCCHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD--QFEHRSFISNVRETSGQNDGLVSLQNK 258 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~ 258 (1382)
-+.++|-+..++.|.+.+.. ...+....+|++|.|||+-|.+++..+-. -|++++.-.+ ++...+..-.-.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln----aSderGisvvr~K 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN----ASDERGISVVREK 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc----ccccccccchhhh
Confidence 35689999999999998864 56788899999999999999999987533 3555544322 3333333211111
Q ss_pred H--HHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCc-EEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-
Q 000630 259 L--IFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERK-VFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR- 332 (1382)
Q Consensus 259 l--l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r-~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~- 332 (1382)
+ ...+.... ...... ..++ -.+|||+++.. +.|.++......+...++.|+.+..-
T Consensus 109 ik~fakl~~~~-----------------~~~~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 109 IKNFAKLTVLL-----------------KRSDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred hcCHHHHhhcc-----------------ccccCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChh
Confidence 1 11111000 000000 0122 47889999874 45777776666556667755554433
Q ss_pred Cccc-cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 000630 333 GALP-EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP 387 (1382)
Q Consensus 333 ~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1382)
.+.. .......|..++|.+++..+-+...+-....+-+ .+..+.|++.++|--
T Consensus 171 rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 171 RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL 224 (346)
T ss_pred hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence 2221 1123457899999999999888877743333222 256778888887743
No 151
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0021 Score=77.60 Aligned_cols=192 Identities=14% Similarity=0.060 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.|.+.+..+. -.....++|+.|+||||+|+.++..+...-... . .+.+.-.-...+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~--~--------~pc~~c~nc~~i~~ 84 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE--G--------EPCGKCENCVEIDK 84 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC--C--------CCCCccHHHHHHhc
Confidence 468999999999999996532 345567899999999999999998764210000 0 00000000000000
Q ss_pred ----HhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeC
Q 000630 262 ----DLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 262 ----~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR 330 (1382)
++..-. ........+ ++.+.+.. .+++-++|+|+++.. +..+.++.......+...+|++|.
T Consensus 85 g~~~d~~eid---aas~~gvd~----ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 85 GSFPDLIEID---AASNRGIDD----IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CCCCcEEEEe---CccCCCHHH----HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 000000 000000011 12222222 245668999999754 345555555544455666666553
Q ss_pred C-CCcccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 331 D-RGALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 331 ~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
+ ..+... ......+++.+++.++....+...+-...... ..+.+..+++.++|.+..+...
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 223221 12345899999999999888887553222111 1255677888899977644333
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0022 Score=73.32 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 000630 294 RKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPT 369 (1382)
Q Consensus 294 ~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 369 (1382)
++-++|+|+++.. +....++.......+++.+|+||.+.. +.+. ......+.+.+++.+++.+.+.....+ ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--SD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--CC-
Confidence 3444567999864 445566655555567788888887663 3322 234568999999999999999855311 11
Q ss_pred chHHHHHHHHHHHhCCChHHHHHH
Q 000630 370 DKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 370 ~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
.+.+..++..++|.|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 134567789999999755444
No 153
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.51 E-value=0.00042 Score=81.66 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=87.6
Q ss_pred cCcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCC
Q 000630 181 AAYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQN 249 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 249 (1382)
-..+.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. .+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-----~s-- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-----GS-- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-----cc--
Confidence 34578999999999887642 1123456889999999999999999998755431 111 00
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH----------------HHhhHh
Q 000630 250 DGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS----------------QLNALC 313 (1382)
Q Consensus 250 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~----------------~l~~l~ 313 (1382)
.+.. .... .........+.......+.+|+||+++... .+..++
T Consensus 252 ----eL~~----k~~G------------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 252 ----ELIQ----KYLG------------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred ----hhhh----hhcc------------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 0110 0000 000001111222223567888999875320 112222
Q ss_pred cCCCcC--CCCCeEEEEeCCCCcccc-----CCCccEEEcCCCCHHHHHHHHHHhhc
Q 000630 314 GDKEWF--SEGSRIIITTRDRGALPE-----HYVNQLYEVQKLDSSRALQLFSYHAL 363 (1382)
Q Consensus 314 ~~~~~~--~~gs~IliTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 363 (1382)
...+.+ ..+.+||+||.....+.. ...+..++++..+.++..++|..++.
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred HHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 221111 235678888874433221 12356899999999999999997763
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0038 Score=76.65 Aligned_cols=196 Identities=16% Similarity=0.043 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..-.....- +. .... .+++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p--C~----~C~~----C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP--CG----ECSS----CKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC--Cc----cchH----HHHHHc
Confidence 46899999999999999753 2345678999999999999999999764210000000 00 0000 011100
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
.-.... ...........+..+..+.+... ..+++-++|+|+++.. ..++.|+.......+.+.+|++|.+. .+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 000000 00000000011111111111111 1346668899999764 45667776666555667776666432 2322
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
. ......+++.+++.++..+.+...+....... ..+.+..|++.++|.+-.+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1 12345789999999999888887664322221 1256777889999987533
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0029 Score=78.65 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
+.++|-+...+.|.+.+..+ .-...+.++|+.|+||||+|+.++..+.......-. ..++. .. -.+.+-.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~-~~Cg~----C~----sC~~~~~ 86 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADG-EACNE----CE----SCVAFNE 86 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC-CCCCc----ch----HHHHHhc
Confidence 46899999999999999643 234567899999999999999999876421100000 00000 00 0000000
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEe-CCCCccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITT-RDRGALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTT-R~~~~~~ 336 (1382)
.-.... ...........+..+.+..+... ..+++-++|+|+++.. +..+.|+.......+.+.+|++| +...+..
T Consensus 87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 000000 00000000001111111111100 1234557899999764 34566665555545666766655 4444443
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPL 388 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 388 (1382)
. ......+++++++.++....+.+.+-......+ .+.+..|++.++|-.-
T Consensus 167 tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr 217 (614)
T PRK14971 167 TILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMR 217 (614)
T ss_pred HHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 2 234668999999999999888865533221111 2457788899998665
No 156
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.49 E-value=0.00095 Score=78.27 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=97.3
Q ss_pred CccccCcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeecccc
Q 000630 177 PMKVAAYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRET 245 (1382)
Q Consensus 177 ~~~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 245 (1382)
|...-..+.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~----- 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV----- 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-----
Confidence 333345688999998888876531 1123567889999999999999999997644331 111
Q ss_pred ccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh------------H----HH
Q 000630 246 SGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP------------S----QL 309 (1382)
Q Consensus 246 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~------------~----~l 309 (1382)
. ..+ ...... .......+.+.......+.+|+||+++.. . .+
T Consensus 212 ~------s~l----~~k~~g------------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l 269 (398)
T PTZ00454 212 G------SEF----VQKYLG------------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRIL 269 (398)
T ss_pred h------HHH----HHHhcc------------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHH
Confidence 0 011 111100 00001111222223457889999997642 0 12
Q ss_pred hhHhcCCCcC--CCCCeEEEEeCCCCcccc-----CCCccEEEcCCCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHH
Q 000630 310 NALCGDKEWF--SEGSRIIITTRDRGALPE-----HYVNQLYEVQKLDSSRALQLFSYHALGREN-PTDKFFKISEQIVS 381 (1382)
Q Consensus 310 ~~l~~~~~~~--~~gs~IliTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~ 381 (1382)
..++...+.+ ..+..||+||........ ...+..++++..+.++..++|..+.-+... +..+ ..++++
T Consensus 270 ~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~ 345 (398)
T PTZ00454 270 LELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVS 345 (398)
T ss_pred HHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHH
Confidence 2333222211 245678888875543321 123567899999999988888865532211 1112 345566
Q ss_pred HhCCCh
Q 000630 382 LTGGLP 387 (1382)
Q Consensus 382 ~~~g~P 387 (1382)
.+.|+-
T Consensus 346 ~t~g~s 351 (398)
T PTZ00454 346 RPEKIS 351 (398)
T ss_pred HcCCCC
Confidence 666553
No 157
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0023 Score=79.43 Aligned_cols=201 Identities=15% Similarity=0.079 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+++.+........ .....+.-...+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~--------~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP--------TPEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC--------CCCCCcccHHHHHHhc
Confidence 468999999999999997542 2356779999999999999999997643211000 0001111111222211
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Cccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~ 336 (1382)
...... ..........+...+.+..+... ..+++-++|+|+++.. +..+.|+..+......+.+|++|.+. .+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 110000 00000000011111111111100 1235568899999864 44666665555444555556555443 3322
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
. ......+++..++.++....+.+.+-......+ .+.+..|++.++|.+..+..+
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223567889999999988888765532211111 145778899999987644433
No 158
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.49 E-value=0.0012 Score=82.42 Aligned_cols=208 Identities=15% Similarity=0.062 Sum_probs=104.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc--cc---ccceeee-eccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD--QF---EHRSFIS-NVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~-~~~~~~~~~~~~~~l 255 (1382)
+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++.... .+ ...-|+. +... . ..+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~-l--~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT-L--RWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh-c--cCCHHHH
Confidence 5689999999998887743 33457899999999999999999875432 11 1122332 1110 0 1111111
Q ss_pred HHHH---------------HHHhhCCCCCC--CCCC-------Ccccc-hhhcHHHHHHHHcCCcEEEEEcCCCChH--H
Q 000630 256 QNKL---------------IFDLSSGNKVP--TENV-------PTENV-VTANIAEIKNVVRERKVFVVLDDVDDPS--Q 308 (1382)
Q Consensus 256 ~~~l---------------l~~l~~~~~~~--~~~~-------~~~~~-~~~~~~~l~~~l~~~r~LlVLDdv~~~~--~ 308 (1382)
...+ +.......... .... .+... ....+..+.+.+.++++.++-|+.|..+ .
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 1111 11100000000 0000 00001 1223566777777778887766555432 2
Q ss_pred HhhHhcCCCcCCCCCeEEE--EeCCCCcccc-C-CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Q 000630 309 LNALCGDKEWFSEGSRIII--TTRDRGALPE-H-YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTG 384 (1382)
Q Consensus 309 l~~l~~~~~~~~~gs~Ili--TTR~~~~~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~ 384 (1382)
|+.+...+....+...|+| ||++...... . .....+.+.+++.+|.++++...+-.....-+ .+..+.|+++..
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls--~eal~~L~~ys~ 386 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA--AGVEELIARYTI 386 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHCCC
Confidence 3333322222233434555 5665432211 1 12346789999999999999876532111111 234445555554
Q ss_pred CChHHHHHHHhh
Q 000630 385 GLPLALEVFGAF 396 (1382)
Q Consensus 385 g~PLal~~~g~~ 396 (1382)
.-+-|+..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445555555433
No 159
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.49 E-value=0.00038 Score=89.37 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=86.6
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc------ccceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF------EHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++...- ...+|..++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------------ 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------------ 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------------
Confidence 468999999999999886532 33456999999999999999999875431 2233332111
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-cCCcEEEEEcCCCCh----------HHHhh-HhcCCCcCCCC-
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV-RERKVFVVLDDVDDP----------SQLNA-LCGDKEWFSEG- 322 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVLDdv~~~----------~~l~~-l~~~~~~~~~g- 322 (1382)
.++.. .....+.++.+..+.+.+ ..++.+|++|+++.. .+... +.+.. ..|
T Consensus 248 --~l~a~-----------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~ 311 (731)
T TIGR02639 248 --SLLAG-----------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGK 311 (731)
T ss_pred --HHhhh-----------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCC
Confidence 11100 001122333333343333 246789999998632 11222 33322 233
Q ss_pred CeEEEEeCCCCc------ccc-CCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 323 SRIIITTRDRGA------LPE-HYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 323 s~IliTTR~~~~------~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
-++|-+|...+. ... ......++++.++.++..+++....
T Consensus 312 i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 312 LRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred eEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 344444443111 000 0123579999999999999998543
No 160
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.00075 Score=87.15 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=86.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc------cceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE------HRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~l 255 (1382)
+.++||+.++.++.+.|.... ..-+.++|.+|+||||+|..+++++..... ..+|..+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----------
Confidence 569999999999999886532 334569999999999999999998754321 1222221111
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc--CCcEEEEEcCCCChH---------HHhh-HhcCCCcCCCCC
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDPS---------QLNA-LCGDKEWFSEGS 323 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~~---------~l~~-l~~~~~~~~~gs 323 (1382)
+..+ .....+.+..+..+.+.+. +++++|++|++.... +... |.+... ...-
T Consensus 254 -------l~ag-------~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l 317 (852)
T TIGR03345 254 -------LQAG-------ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGEL 317 (852)
T ss_pred -------hhcc-------cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCe
Confidence 0000 0111222223333332222 468999999985421 1112 333221 2234
Q ss_pred eEEEEeCCCCcccc-------CCCccEEEcCCCCHHHHHHHHHHh
Q 000630 324 RIIITTRDRGALPE-------HYVNQLYEVQKLDSSRALQLFSYH 361 (1382)
Q Consensus 324 ~IliTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 361 (1382)
++|-||...+.... ......+.+++++.+++.+++...
T Consensus 318 ~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 318 RTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 56666653211100 113458999999999999997543
No 161
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0035 Score=77.32 Aligned_cols=193 Identities=15% Similarity=0.076 Sum_probs=105.0
Q ss_pred cCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
-..++|.+...+.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..-... ..+.+.-...+.+.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~----------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD----------GEPCNECEICKAIT 83 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCccHHHHHHh
Confidence 3578999999999999997542 345677899999999999999998653211000 00001111111111
Q ss_pred HHhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEe-CCC
Q 000630 261 FDLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITT-RDR 332 (1382)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTT-R~~ 332 (1382)
...... ...-+....... +.++.+.+.. .+++-++|+|+++.. ..+..|+.......+...+|++| ...
T Consensus 84 ~g~~~d--v~eidaas~~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 84 NGSLMD--VIEIDAASNNGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred cCCCCC--eEEeeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 100000 000000000001 1112222221 235668899999864 45666665554444555555555 333
Q ss_pred Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 333 GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 333 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
.+... ......+++.+++.++..+.+...+-......+ .+.+..|++.++|.+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 33322 123567899999999998888766532221111 25567788888887753
No 162
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.39 E-value=3.1e-05 Score=80.50 Aligned_cols=61 Identities=26% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCcceecccCcccCCCC-----CCccCCCCCCCEeeccCCCCCcC-----chhccCCcccceeecccccCC
Q 000630 1060 SSLEELDAQGWRIGGKI-----PDDFEKLSSLEILNLGNNNFCNL-----PSSLRGLSHLKNLLLPYCQEL 1120 (1382)
Q Consensus 1060 ~~L~~L~Ls~n~i~~~~-----~~~l~~l~~L~~L~Ls~N~l~~l-----p~~l~~l~~L~~L~Ls~n~~l 1120 (1382)
..|+.+.+..|.|.-.. -..+..+.+|+.|||..|-|+.. ...+..-+.|+.|.+.+|-+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 35555556655443110 11234456777777777777622 223444556788888877654
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.36 E-value=0.00095 Score=86.78 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc-c-----ccceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-F-----EHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|..+++++... - ...+|..++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------------ 244 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------------ 244 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------------
Confidence 458999999999999997532 2345699999999999999999987532 1 1234433211
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-cCCcEEEEEcCCCChH---------HHhhHh-cCCCcCCCCCe
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV-RERKVFVVLDDVDDPS---------QLNALC-GDKEWFSEGSR 324 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVLDdv~~~~---------~l~~l~-~~~~~~~~gs~ 324 (1382)
.++. + .....+.++.+..+.+.+ ..++.+|++|++...- ....++ +... ...-+
T Consensus 245 --~l~a----g-------~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~ 309 (821)
T CHL00095 245 --LLLA----G-------TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQ 309 (821)
T ss_pred --HHhc----c-------CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcE
Confidence 1110 1 111122333333333333 3468999999985321 122222 2111 12245
Q ss_pred EEEEeCCCCcc------cc-CCCccEEEcCCCCHHHHHHHHHH
Q 000630 325 IIITTRDRGAL------PE-HYVNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 325 IliTTR~~~~~------~~-~~~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
+|.+|...... .. ......+.++..+.++..++++.
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 55555433210 10 11235788999999998888764
No 164
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.36 E-value=3.9e-05 Score=79.80 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=23.9
Q ss_pred cccCCCCCceEeccCCCCCccC----CccCCCCCCCCEEEccC
Q 000630 712 SVGNLSSLLHLNLRDCRNLIEL----PSDVSGLKHLENLILSD 750 (1382)
Q Consensus 712 ~i~~l~~L~~L~L~~~~~~~~l----p~~i~~l~~L~~L~Ls~ 750 (1382)
.+..+..+..++||+|.+.+.- ...|.+-.+|+..+++.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3445677777888887765532 23344556666666664
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00098 Score=74.11 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=27.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..+.++|.+|+|||.||.++++.+..+...++|+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45789999999999999999998876544444543
No 166
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.00031 Score=79.98 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeeeeccccccCCCCHHHHHHHHHHHhhCCC-CCCCCCCCcccchhh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGN-KVPTENVPTENVVTA 282 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~~~~~~ 282 (1382)
-..++|+|.+|.|||||++.+++.+... |+..+|+..+++ ....+.++++.++..+.... +.+.. ....-...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~--~~~~va~~ 242 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPAS--RHVQVAEM 242 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChH--HHHHHHHH
Confidence 3578999999999999999999987655 888899885433 23578888888865443211 00000 00011112
Q ss_pred cHHHHHHH-HcCCcEEEEEcCCCChH
Q 000630 283 NIAEIKNV-VRERKVFVVLDDVDDPS 307 (1382)
Q Consensus 283 ~~~~l~~~-l~~~r~LlVLDdv~~~~ 307 (1382)
..+..+.. -.+++++|++|++....
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 22222232 25689999999997643
No 167
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=8.4e-06 Score=75.93 Aligned_cols=111 Identities=23% Similarity=0.300 Sum_probs=69.3
Q ss_pred cccccccCccCCC--CCcccccCCCCCcEEecCCCcCccCccccCCccccceeeccCCccCCcccccccCCCCCCEEEcc
Q 000630 885 LKAFSVGRCQFLS--ELPDSIEGLASLVELQLDGTSIRHLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIV 962 (1382)
Q Consensus 885 L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 962 (1382)
+..++|+.|++.. ..+..+.....|+..+|++|.+..+|..+ -..++.++.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf-----------------------t~kf~t~t~lNl~ 85 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF-----------------------TIKFPTATTLNLA 85 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH-----------------------hhccchhhhhhcc
Confidence 4455666665432 22233444455556666666665555433 2234567777777
Q ss_pred cccCcccCccccCCCCCceeccccccccccccccccCCcccceeeccCccCccCCcc
Q 000630 963 NASITRMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVTELPES 1019 (1382)
Q Consensus 963 ~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~i~~~ 1019 (1382)
+|.++.+|..+..++.|+.|+++.|++... |..+..+.+|-.|+..+|.+.++|..
T Consensus 86 ~neisdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 86 NNEISDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhhhhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccccCcHH
Confidence 777778887777788888888887776543 34444477777777777777776654
No 168
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=3.2e-05 Score=72.14 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeec
Q 000630 788 VKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLI 867 (1382)
Q Consensus 788 ~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 867 (1382)
..|...+|++|. ...+|..+....+.++.|++.+|.+..+|..+..++.|+.|+++.|.+.. .|..+..+.+|-.|+.
T Consensus 53 ~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence 344444555544 34444444444567777777777788888878888888888888777654 3455566778888888
Q ss_pred cCCCCcccCcccCCCcccccccccCccCCC
Q 000630 868 DGTAVKNLPASIGSLSYLKAFSVGRCQFLS 897 (1382)
Q Consensus 868 ~~n~~~~lp~~l~~l~~L~~L~L~~~~~~~ 897 (1382)
.+|....+|-.+-..+..-...+.++.+.+
T Consensus 131 ~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 131 PENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred CCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 888877776543222222333344444433
No 169
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.28 E-value=0.0034 Score=70.63 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=67.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccc--ccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQF--EHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
-+.++|.+|.||||+|+.+++.+...- ....|+. ++. . .++..+... . .....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-----v~~----~----~l~~~~~g~-------~-----~~~~~ 114 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-----VTR----D----DLVGQYIGH-------T-----APKTK 114 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-----ecH----H----HHhHhhccc-------c-----hHHHH
Confidence 577999999999999999988664321 1112332 110 1 122222110 0 01111
Q ss_pred HHHHHHHcCCcEEEEEcCCCCh-----------HHHhhHhcCCCcCCCCCeEEEEeCCCCccccC--------CCccEEE
Q 000630 285 AEIKNVVRERKVFVVLDDVDDP-----------SQLNALCGDKEWFSEGSRIIITTRDRGALPEH--------YVNQLYE 345 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~--------~~~~~~~ 345 (1382)
..+.+ -..-+|+||+++.. +.++.+.........+.+||+++......... .....++
T Consensus 115 ~~~~~---a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~ 191 (284)
T TIGR02880 115 EILKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVD 191 (284)
T ss_pred HHHHH---ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEE
Confidence 12222 13358889999632 22333443333334455666666432111100 1235799
Q ss_pred cCCCCHHHHHHHHHHhh
Q 000630 346 VQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 346 l~~L~~~ea~~Lf~~~a 362 (1382)
+++++.+|..+++...+
T Consensus 192 fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 192 FPDYSEAELLVIAGLML 208 (284)
T ss_pred eCCcCHHHHHHHHHHHH
Confidence 99999999999988665
No 170
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0064 Score=75.42 Aligned_cols=199 Identities=13% Similarity=0.084 Sum_probs=104.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
..+||-+..++.|.+.+..+ .-...+.++|..|+||||+|+.+++.+...-... ....+.-.....+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~----------~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT----------AEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC----------CCCCCccHHHHHHhc
Confidence 56899999999999998643 2245667999999999999999998753210000 000000011111100
Q ss_pred HhhCCC-CCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeC-CCCccc
Q 000630 262 DLSSGN-KVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTR-DRGALP 336 (1382)
Q Consensus 262 ~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR-~~~~~~ 336 (1382)
.-.... ..........++..+..+.+... ...++-++|+|+|+.. ...+.|+..+....+.+.+|++|. ...+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000000 00000000011111111111110 1234557889999764 345566655554456666666554 333332
Q ss_pred c-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHH
Q 000630 337 E-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP-LALEVF 393 (1382)
Q Consensus 337 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 393 (1382)
. ......+++..++.++....+...+-......+ .+.+..|++.++|.. .|+..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 223567889999999988888754422211111 245677888888865 444444
No 171
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.016 Score=66.03 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=106.6
Q ss_pred cccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc---------------cccceeeeecccccc
Q 000630 183 YNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ---------------FEHRSFISNVRETSG 247 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------f~~~~~~~~~~~~~~ 247 (1382)
.++|-+...+.+.+.+..+. -.....++|..|+||+++|.++++.+-.. ++...|+..... .
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~--~ 81 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ--H 81 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc--c
Confidence 57899999999999996532 24688899999999999999999875322 122233321000 0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc-----CCcEEEEEcCCCCh--HHHhhHhcCCCcCC
Q 000630 248 QNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR-----ERKVFVVLDDVDDP--SQLNALCGDKEWFS 320 (1382)
Q Consensus 248 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVLDdv~~~--~~l~~l~~~~~~~~ 320 (1382)
+.... ....+...+.. ......-.+ +.++.+.+.+. +++-++|+|+++.. ....+|+..+....
T Consensus 82 ~g~~~---~~~~~~~~~~~-----~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp 152 (314)
T PRK07399 82 QGKLI---TASEAEEAGLK-----RKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG 152 (314)
T ss_pred ccccc---chhhhhhcccc-----ccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC
Confidence 00000 00000000000 000000001 11233333332 45678889999764 34455555444444
Q ss_pred CCCeEEEEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHH
Q 000630 321 EGSRIIITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEV 392 (1382)
Q Consensus 321 ~gs~IliTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 392 (1382)
.+.+|++|.+. .+.+. ......+++.+++.++..+.+....... ..+ .....++..++|.|.....
T Consensus 153 -~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 153 -NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIA 220 (314)
T ss_pred -CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHH
Confidence 44555555433 34332 2346789999999999999998654211 111 1135788999999976544
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.26 E-value=0.0015 Score=84.77 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=40.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|..++.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 459999999999999996532 335569999999999999999998754
No 173
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.24 E-value=0.00028 Score=53.66 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=22.4
Q ss_pred CCCEeeccCCCCCcCchhccCCcccceeeccccc
Q 000630 1085 SLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQ 1118 (1382)
Q Consensus 1085 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~Ls~n~ 1118 (1382)
+|++|++++|+|+.+|..+.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5667777777777766666777777777777775
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.20 E-value=0.0042 Score=77.24 Aligned_cols=171 Identities=21% Similarity=0.191 Sum_probs=94.6
Q ss_pred CcccchhHHHHHHHHHhcC---C-------CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 182 AYNVGLDFRIKEVIRLLDV---K-------SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
..++|.+...+++.+.+.. . ....+-|.++|++|.|||++|++++...... |+. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-----is---- 248 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-----IS---- 248 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-----cc----
Confidence 4578888777777665421 1 1124568899999999999999999865322 221 11
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh----------------HHHhhHhcC
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP----------------SQLNALCGD 315 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~----------------~~l~~l~~~ 315 (1382)
...+.... . + .........+.......+.+|+|||++.. ..+..++..
T Consensus 249 ~s~f~~~~----~-g-----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ 312 (638)
T CHL00176 249 GSEFVEMF----V-G-----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE 312 (638)
T ss_pred HHHHHHHh----h-h-----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh
Confidence 01111100 0 0 00011122233344567899999999643 123444433
Q ss_pred CCcC--CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 000630 316 KEWF--SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGG 385 (1382)
Q Consensus 316 ~~~~--~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 385 (1382)
.+.+ ..+..||.||....... ....+..+.++..+.++-.++++.++-..... + ......+++.+.|
T Consensus 313 ~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~--d~~l~~lA~~t~G 386 (638)
T CHL00176 313 MDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-P--DVSLELIARRTPG 386 (638)
T ss_pred hccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-h--hHHHHHHHhcCCC
Confidence 2221 24556666775543222 11234678899999999999998776432111 1 1234567777776
No 175
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.0092 Score=68.00 Aligned_cols=170 Identities=17% Similarity=0.214 Sum_probs=104.8
Q ss_pred cCcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc--ceeeeeccccccCCCCHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH--RSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
+..++||+.++..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... ++++. + ..-....++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c----~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-C----TSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-e----ccccchHHHH
Confidence 56799999999999999864 33456778899999999999999999977654443 24443 1 1113345666
Q ss_pred HHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcC--CcEEEEEcCCCChH--HHhhHhcCCCcC-CCCCeEEEEeCC
Q 000630 257 NKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRE--RKVFVVLDDVDDPS--QLNALCGDKEWF-SEGSRIIITTRD 331 (1382)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~r~LlVLDdv~~~~--~l~~l~~~~~~~-~~gs~IliTTR~ 331 (1382)
..+...+......+ + ...+..+.+...... +-+|+|||.+|... .-..+...+.|. -+++|+|+.--.
T Consensus 224 ~kI~~~~~q~~~s~----~---~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiA 296 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSP----G---TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHHhcCC----c---hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeeh
Confidence 66666663222111 1 113334555554444 35899999987643 112222223333 366776665421
Q ss_pred C------Ccccc-----CCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 332 R------GALPE-----HYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 332 ~------~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
. ..+.. .-..+.+..++.+.++..+.+..+.
T Consensus 297 NslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 297 NSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred hhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1 11111 1234578889999999999999776
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.18 E-value=0.0015 Score=85.33 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=86.2
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc------ccceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF------EHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|..+++++...+ ...+|..++. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~----------~- 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----------A- 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------H-
Confidence 469999999999999996533 33455899999999999999999875432 2223332111 1
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc--CCcEEEEEcCCCChH---------HHhhHhcCCCcCCCC-C
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR--ERKVFVVLDDVDDPS---------QLNALCGDKEWFSEG-S 323 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVLDdv~~~~---------~l~~l~~~~~~~~~g-s 323 (1382)
++. + .....+.+..+..+.+.+. +++.+|++|++.... +...++.+. ...| -
T Consensus 240 ---l~a----~-------~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i 303 (852)
T TIGR03346 240 ---LIA----G-------AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGEL 303 (852)
T ss_pred ---Hhh----c-------chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCce
Confidence 100 0 0111123333333333332 368999999986431 122222221 1222 3
Q ss_pred eEEEEeCCCCc---c---cc-CCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 324 RIIITTRDRGA---L---PE-HYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 324 ~IliTTR~~~~---~---~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
++|-+|..... . .. ......+.++..+.++..+++....
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 45544443321 0 00 1123568899999999999887543
No 177
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.18 E-value=0.0026 Score=78.13 Aligned_cols=173 Identities=20% Similarity=0.200 Sum_probs=92.3
Q ss_pred CcccchhHHHHHHHHHhcC----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 182 AYNVGLDFRIKEVIRLLDV----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
+.++|.+...+++.+.+.. +....+-+.++|++|.|||++|++++...... |+. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~-----i~---- 120 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS-----IS---- 120 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eee-----cc----
Confidence 4678888777766654431 11223458899999999999999999865322 121 11
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH----------------HHhhHhcC
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS----------------QLNALCGD 315 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~----------------~l~~l~~~ 315 (1382)
...+... ... .........+.......+.+|+||+++... .+..++..
T Consensus 121 ~~~~~~~----~~g------------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ 184 (495)
T TIGR01241 121 GSDFVEM----FVG------------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 184 (495)
T ss_pred HHHHHHH----Hhc------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhh
Confidence 0111111 000 001111122233334567899999985421 12233322
Q ss_pred CCcC--CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 000630 316 KEWF--SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP 387 (1382)
Q Consensus 316 ~~~~--~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1382)
.+.+ ..+..||.||....... ....+..+.++..+.++-.+++..+.-......+ .....+++.+.|.-
T Consensus 185 ~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 185 MDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred hccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 2211 23445666665443211 1123568899999999999999876633222111 12346777777743
No 178
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0028 Score=69.66 Aligned_cols=170 Identities=22% Similarity=0.269 Sum_probs=96.3
Q ss_pred cccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 183 YNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
..=|-+..+++|.+.... +-+..+-|.++|++|.|||-||++|+++....| +..++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg-------- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG-------- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc--------
Confidence 344666666666665421 113456788999999999999999999865444 43211
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc-CCcEEEEEcCCCChH----------------HHhhHhc
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR-ERKVFVVLDDVDDPS----------------QLNALCG 314 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVLDdv~~~~----------------~l~~l~~ 314 (1382)
.. ++....++ -......+-+.-+ ..+..|.+|.++... .+-.|+.
T Consensus 219 -SE----lVqKYiGE-------------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 219 -SE----LVQKYIGE-------------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred -HH----HHHHHhcc-------------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 11 22221110 0112222222222 467889999885421 1233444
Q ss_pred CCCcCC--CCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCC
Q 000630 315 DKEWFS--EGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGREN-PTDKFFKISEQIVSLTGGL 386 (1382)
Q Consensus 315 ~~~~~~--~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~ 386 (1382)
..+.|. ...+||..|...+++. ....++.++++.-+.+.-.+.|.-|+-+-.- ..-++ +.+++.+.|.
T Consensus 281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~ 356 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGF 356 (406)
T ss_pred hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCC
Confidence 444443 4568898886554432 2335678999977777788888877743221 12233 3455566665
Q ss_pred h
Q 000630 387 P 387 (1382)
Q Consensus 387 P 387 (1382)
-
T Consensus 357 s 357 (406)
T COG1222 357 S 357 (406)
T ss_pred c
Confidence 4
No 179
>CHL00181 cbbX CbbX; Provisional
Probab=97.15 E-value=0.01 Score=66.83 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=69.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc-c-ccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQ-F-EHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTAN 283 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 283 (1382)
..+.++|.+|+||||+|+.+++..... + ...-|+. ++ .. .+....... . ....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-----v~----~~----~l~~~~~g~-------~-----~~~~ 114 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-----VT----RD----DLVGQYIGH-------T-----APKT 114 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-----ec----HH----HHHHHHhcc-------c-----hHHH
Confidence 347799999999999999999865321 1 1111332 11 11 122222110 0 0011
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCh-----------HHHhhHhcCCCcCCCCCeEEEEeCCCCc----------cccCCCcc
Q 000630 284 IAEIKNVVRERKVFVVLDDVDDP-----------SQLNALCGDKEWFSEGSRIIITTRDRGA----------LPEHYVNQ 342 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IliTTR~~~~----------~~~~~~~~ 342 (1382)
...+.+ ...-+|+||+++.. +..+.+.........+.+||+++....+ ... ...
T Consensus 115 ~~~l~~---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR--~~~ 189 (287)
T CHL00181 115 KEVLKK---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSR--IAN 189 (287)
T ss_pred HHHHHH---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHh--CCc
Confidence 111222 12348889999642 2334444433333445667777653221 111 345
Q ss_pred EEEcCCCCHHHHHHHHHHhhc
Q 000630 343 LYEVQKLDSSRALQLFSYHAL 363 (1382)
Q Consensus 343 ~~~l~~L~~~ea~~Lf~~~a~ 363 (1382)
.+.+++++.+|..+++...+-
T Consensus 190 ~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 190 HVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred eEEcCCcCHHHHHHHHHHHHH
Confidence 799999999999999886653
No 180
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.15 E-value=0.00029 Score=53.56 Aligned_cols=41 Identities=37% Similarity=0.611 Sum_probs=29.9
Q ss_pred CCcceecccCcccCCCCCCccCCCCCCCEeeccCCCCCcCch
Q 000630 1060 SSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPS 1101 (1382)
Q Consensus 1060 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp~ 1101 (1382)
++|++|++++|+|+ .+|..+.+|++|+.|++++|+|+.+|.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 36778888888886 455568888888888888888887653
No 181
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.0099 Score=65.69 Aligned_cols=35 Identities=34% Similarity=0.295 Sum_probs=27.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.-+.++|.+|+|||.||.++++....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999998765544455553
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.14 E-value=0.0021 Score=63.52 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56999999999999999999875
No 183
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00016 Score=90.32 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=14.9
Q ss_pred cCCCCCceEeccCCCCCccCCccCCCCCCCCEEEccC
Q 000630 714 GNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSD 750 (1382)
Q Consensus 714 ~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~ 750 (1382)
.++++|..||+|++++ ..+ ..+++|++|+.|.+.+
T Consensus 170 ~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNI-SNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCCc-cCc-HHHhccccHHHHhccC
Confidence 3444455555544322 222 3344444444444443
No 184
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.10 E-value=0.0091 Score=65.57 Aligned_cols=194 Identities=12% Similarity=0.135 Sum_probs=107.1
Q ss_pred Ccccchh---HHHHHHHHHhcC-CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc------ceeeeeccccccCCCC
Q 000630 182 AYNVGLD---FRIKEVIRLLDV-KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH------RSFISNVRETSGQNDG 251 (1382)
Q Consensus 182 ~~~vGr~---~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~ 251 (1382)
+.+||-. ..++.|.+++.. .....+-+.|+|.+|+|||+++++++...-..++. ++.+. .....+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCC
Confidence 3455543 335566666654 22345678999999999999999999865433322 22232 566778
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcC-CcEEEEEcCCCCh-----HHHhhHhcCCCcC---CCC
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRE-RKVFVVLDDVDDP-----SQLNALCGDKEWF---SEG 322 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVLDdv~~~-----~~l~~l~~~~~~~---~~g 322 (1382)
...+...|+..+.... ............+.+.++. +--+||+|.+.+. .+-..++..++.. -.-
T Consensus 109 ~~~~Y~~IL~~lgaP~-------~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 109 ERRFYSAILEALGAPY-------RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred hHHHHHHHHHHhCccc-------CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 8999999999987431 1112233334444455554 4557889999653 1111111111111 233
Q ss_pred CeEEEEeCCC--------CccccCCCccEEEcCCCCHHH-HHHHHHHhh--cCCCCC-CchHHHHHHHHHHHhCCChHHH
Q 000630 323 SRIIITTRDR--------GALPEHYVNQLYEVQKLDSSR-ALQLFSYHA--LGRENP-TDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 323 s~IliTTR~~--------~~~~~~~~~~~~~l~~L~~~e-a~~Lf~~~a--~~~~~~-~~~~~~~~~~i~~~~~g~PLal 390 (1382)
+-|.|-|++- .++. ....+.++....++ ...|+.... +.-..+ .-...++++.|...++|+.=-+
T Consensus 182 piV~vGt~~A~~al~~D~QLa~---RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS---RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh---ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 4566666532 2222 23456677665544 334443211 111111 1233578899999999986433
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.0022 Score=69.67 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
.+..+.+...........+.++|.+|+|||+||.++++.+...-..++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34555555533222345788999999999999999999876654444454
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.019 Score=65.09 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 000630 294 RKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPT 369 (1382)
Q Consensus 294 ~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 369 (1382)
++-++|+|+++.. ..-.+|+..+....+++.+|++|.+. .+++. ......+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~--~~--- 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG--VS--- 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC--CC---
Confidence 5568899999875 34555555555556788788777654 34332 2346689999999999998887431 11
Q ss_pred chHHHHHHHHHHHhCCChHHHHHHH
Q 000630 370 DKFFKISEQIVSLTGGLPLALEVFG 394 (1382)
Q Consensus 370 ~~~~~~~~~i~~~~~g~PLal~~~g 394 (1382)
...+..++..++|.|+....+.
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1336678999999998665443
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.0002 Score=89.55 Aligned_cols=106 Identities=20% Similarity=0.132 Sum_probs=75.1
Q ss_pred ccceeEecCCCC-ccccccccCccccccccEEecCCCcCCCcC-C-CCCCCCcccEEeccCccccccccccccCCCCCce
Q 000630 645 FQLAVLDLSESG-IEYLWGSHTNKVAKNLMVLNLRGCWNLASI-P-DLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLH 721 (1382)
Q Consensus 645 ~~L~~L~Ls~~~-i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~-~-~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~ 721 (1382)
.+|++||+++.. +..-|.......+|.|+.|.+++-.+...- . -..++|+|..||+|++++... ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 478888888763 334444334567899999999885443321 1 257899999999999876544 67899999999
Q ss_pred EeccCCCCCc-cCCccCCCCCCCCEEEccCCC
Q 000630 722 LNLRDCRNLI-ELPSDVSGLKHLENLILSDCS 752 (1382)
Q Consensus 722 L~L~~~~~~~-~lp~~i~~l~~L~~L~Ls~~~ 752 (1382)
|.+.+-.+.. .--..+.+|++|+.||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 9998754432 111346789999999999743
No 188
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0046 Score=73.01 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCC
Q 000630 188 DFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGN 267 (1382)
Q Consensus 188 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 267 (1382)
..-+.++.+.+.... .++.|.|+-++||||+++.+.....+. .+++..... ...-..+ .+
T Consensus 23 ~~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~----~~~~~~l-~d--------- 82 (398)
T COG1373 23 RKLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL----RLDRIEL-LD--------- 82 (398)
T ss_pred HhhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch----hcchhhH-HH---------
Confidence 344555555554322 299999999999999997666655443 444442111 1011111 01
Q ss_pred CCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCcccc------CCCc
Q 000630 268 KVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGALPE------HYVN 341 (1382)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~------~~~~ 341 (1382)
....+...-..++..++||.|.....|+..+..+...++. +|+||+-+..+... .+..
T Consensus 83 ---------------~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~ 146 (398)
T COG1373 83 ---------------LLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRG 146 (398)
T ss_pred ---------------HHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCc
Confidence 1111111111277899999999988887766554444555 88998876544322 2345
Q ss_pred cEEEcCCCCHHHHHHHH
Q 000630 342 QLYEVQKLDSSRALQLF 358 (1382)
Q Consensus 342 ~~~~l~~L~~~ea~~Lf 358 (1382)
..+++.||+..|-..+-
T Consensus 147 ~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 147 KDLELYPLSFREFLKLK 163 (398)
T ss_pred eeEEECCCCHHHHHhhc
Confidence 68999999999977654
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0032 Score=72.50 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=80.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTAN 283 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 283 (1382)
....+.|||..|.|||.|++++.+......+....+. ++ .......++..+.. ..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y-----~~----se~f~~~~v~a~~~----------------~~ 166 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY-----LT----SEDFTNDFVKALRD----------------NE 166 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe-----cc----HHHHHHHHHHHHHh----------------hh
Confidence 3678899999999999999999998777665332222 11 12223333333321 12
Q ss_pred HHHHHHHHcCCcEEEEEcCCCChH----HHhhHhcCCCc-CCCCCeEEEEeCCC---------CccccCCCccEEEcCCC
Q 000630 284 IAEIKNVVRERKVFVVLDDVDDPS----QLNALCGDKEW-FSEGSRIIITTRDR---------GALPEHYVNQLYEVQKL 349 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDdv~~~~----~l~~l~~~~~~-~~~gs~IliTTR~~---------~~~~~~~~~~~~~l~~L 349 (1382)
.+.+++.. .-=++++||++-.. .-+.+...+.. ...|-+||+|++.. ++.++...+-++++.+.
T Consensus 167 ~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 167 MEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred HHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC
Confidence 34555555 33477889985421 11222222111 13455899998643 12222344568999999
Q ss_pred CHHHHHHHHHHhhc
Q 000630 350 DSSRALQLFSYHAL 363 (1382)
Q Consensus 350 ~~~ea~~Lf~~~a~ 363 (1382)
+.+...+.+..++.
T Consensus 245 d~e~r~aiL~kka~ 258 (408)
T COG0593 245 DDETRLAILRKKAE 258 (408)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988664
No 190
>PRK12377 putative replication protein; Provisional
Probab=97.04 E-value=0.0029 Score=68.94 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998876655555554
No 191
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.03 E-value=0.035 Score=63.78 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCh-----------HHHhhHhcCCCcCCCCCeEEEEeCCCCcccc----C--CCccEEEcCCCCHHHHHHH
Q 000630 295 KVFVVLDDVDDP-----------SQLNALCGDKEWFSEGSRIIITTRDRGALPE----H--YVNQLYEVQKLDSSRALQL 357 (1382)
Q Consensus 295 r~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~----~--~~~~~~~l~~L~~~ea~~L 357 (1382)
|=+||+|+.... .+|.+.+.. ..-.+||++|-+...... . .+.+.+.+...+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 678999998432 234443332 456789999976643221 1 3557889999999999999
Q ss_pred HHHhhcCCCCC------------C------chHHHHHHHHHHHhCCChHHHHHHHhhhCCCCCH
Q 000630 358 FSYHALGRENP------------T------DKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRI 403 (1382)
Q Consensus 358 f~~~a~~~~~~------------~------~~~~~~~~~i~~~~~g~PLal~~~g~~L~~~~~~ 403 (1382)
...+.-..... . ..........++.+||-=.-|..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 99776432110 0 1234556678889999999999999999876543
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.01 E-value=0.031 Score=71.99 Aligned_cols=49 Identities=29% Similarity=0.291 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHhcCC------CC-CcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 182 AYNVGLDFRIKEVIRLLDVK------SS-NVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..++|-+..++.|.+.+... .+ ...++.++|++|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56789999999888877531 11 234678999999999999999999773
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.013 Score=67.61 Aligned_cols=164 Identities=16% Similarity=0.060 Sum_probs=88.1
Q ss_pred cccc-hhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc--ccceeeeeccccccCCCCHHHHHHHH
Q 000630 183 YNVG-LDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF--EHRSFISNVRETSGQNDGLVSLQNKL 259 (1382)
Q Consensus 183 ~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l 259 (1382)
.++| -+..++.+.+.+..+ .-.....++|+.|+||||+|+.+++.+-..- ... ..+.-...+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~------------~cg~C~~c~~~ 72 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE------------PCGTCTNCKRI 72 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC------------CCCcCHHHHHH
Confidence 3566 566677788877543 2345678999999999999999998753211 100 00000001111
Q ss_pred HHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC
Q 000630 260 IFDLSSGNKVPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR 332 (1382)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~ 332 (1382)
...-......... .......+ .+..+.+.+ .+.+-++|+|+++.. +...+|+.......+++.+|++|.+.
T Consensus 73 ~~~~hpD~~~i~~-~~~~i~id-~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 73 DSGNHPDVHLVAP-DGQSIKKD-QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred hcCCCCCEEEecc-ccccCCHH-HHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 0000000000000 00000011 112222222 234557888999764 34556666666556788888887654
Q ss_pred C-cccc-CCCccEEEcCCCCHHHHHHHHHHh
Q 000630 333 G-ALPE-HYVNQLYEVQKLDSSRALQLFSYH 361 (1382)
Q Consensus 333 ~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 361 (1382)
. +.+. ......+++.+++.++..+.+...
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3 3332 234568999999999998888743
No 194
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0027 Score=80.39 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc------ccceeeeeccccccCCCCHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF------EHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++...- ...+|.. ++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~--- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DI--- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cH---
Confidence 359999999999999887532 23346899999999999999998764321 1222221 11
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH-cCCcEEEEEcCCCCh----------HHHhhHhcCCCcCCCC-C
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV-RERKVFVVLDDVDDP----------SQLNALCGDKEWFSEG-S 323 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVLDdv~~~----------~~l~~l~~~~~~~~~g-s 323 (1382)
..++. + .....+.+.....+.+.+ +.++.+|++|+++.. .++..++.+. ...| -
T Consensus 251 -~~lla----G-------~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~--L~~g~i 316 (758)
T PRK11034 251 -GSLLA----G-------TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL--LSSGKI 316 (758)
T ss_pred -HHHhc----c-------cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH--HhCCCe
Confidence 11110 0 011122333333343333 346789999999632 1222222111 1223 3
Q ss_pred eEEEEeCCCCccc------c-CCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 324 RIIITTRDRGALP------E-HYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 324 ~IliTTR~~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
+||-+|...+... . ....+.+.++.++.+++.+++....
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4454544322100 0 0123579999999999999998543
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.95 E-value=0.0017 Score=64.96 Aligned_cols=34 Identities=35% Similarity=0.340 Sum_probs=26.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
+.+.|+|++|+||||+|+.++..........+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4788999999999999999999776554233333
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=0.0057 Score=75.39 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=41.0
Q ss_pred cCcccchhHHHHHHHHHhcCCC---CCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 181 AAYNVGLDFRIKEVIRLLDVKS---SNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
-..++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999986432 2346799999999999999999998654
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.01 Score=71.31 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=91.0
Q ss_pred CcccchhHHHHHHHHHhcCC----CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVK----SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
..-+|.++-.+.|.+.|... .-.-+++.++|++|+|||.|++.+++-....|-... +-.++. ..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrD----EA------- 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRD----EA------- 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCcccc----HH-------
Confidence 45689999999999888532 224579999999999999999999998877764321 111111 10
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhh-cHHHHHHHHcCCcEEEEEcCCCChH----------HHhhHhcCCCc-C------
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTA-NIAEIKNVVRERKVFVVLDDVDDPS----------QLNALCGDKEW-F------ 319 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~r~LlVLDdv~~~~----------~l~~l~~~~~~-~------ 319 (1382)
++ .+++..-...+.- .++.+++ .+.+.=+++||.++... -++.|-|.... |
T Consensus 391 ----EI------RGHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 391 ----EI------RGHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ----Hh------ccccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc
Confidence 11 1111222333322 2333333 35577889999997532 13333222110 0
Q ss_pred --CCCCe-EEEEeCCC-C-c-cccCCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 320 --SEGSR-IIITTRDR-G-A-LPEHYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 320 --~~gs~-IliTTR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
-.=|. +.|||-+. + + .+......++++.+.+++|-.+.-++|.
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 12233 34455433 2 1 1122345689999999999887776654
No 198
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.025 Score=59.82 Aligned_cols=180 Identities=21% Similarity=0.211 Sum_probs=99.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCccc-chh
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTEN-VVT 281 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~~ 281 (1382)
++-+++.|+|.-|.|||+++++...-..+.=-..+.+ .....+...+...+..++.... ..... ..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i------~~~~~s~~~~~~ai~~~l~~~p------~~~~~~~~e 116 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI------DKPTLSDATLLEAIVADLESQP------KVNVNAVLE 116 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe------cCcchhHHHHHHHHHHHhccCc------cchhHHHHH
Confidence 3456999999999999999995555433221112222 2334456666677777765311 11111 222
Q ss_pred hcHHHHHHHH-cCCc-EEEEEcCCCCh--HHHh---hHhcCCCcCCCCCeEEEEeCCCCccc--------c-CCCccE-E
Q 000630 282 ANIAEIKNVV-RERK-VFVVLDDVDDP--SQLN---ALCGDKEWFSEGSRIIITTRDRGALP--------E-HYVNQL-Y 344 (1382)
Q Consensus 282 ~~~~~l~~~l-~~~r-~LlVLDdv~~~--~~l~---~l~~~~~~~~~gs~IliTTR~~~~~~--------~-~~~~~~-~ 344 (1382)
+..+.+.... +++| +.++.|+..+. +.++ .|...-..+..--+|+..-..+ +.. . .....+ |
T Consensus 117 ~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~-L~~~lr~~~l~e~~~R~~ir~ 195 (269)
T COG3267 117 QIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK-LRPRLRLPVLRELEQRIDIRI 195 (269)
T ss_pred HHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc-cchhhchHHHHhhhheEEEEE
Confidence 3333344333 3466 89999998652 2333 3322211111112344433211 111 0 011234 9
Q ss_pred EcCCCCHHHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCChHHHHHHHh
Q 000630 345 EVQKLDSSRALQLFSYHALGRENPTDKF-FKISEQIVSLTGGLPLALEVFGA 395 (1382)
Q Consensus 345 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~g~PLal~~~g~ 395 (1382)
++++++.++...++..+.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 196 ~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 196 ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999999999887664433333222 24566788899999999887764
No 199
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.87 E-value=0.0099 Score=76.81 Aligned_cols=50 Identities=28% Similarity=0.248 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+.+.|.+..+++|.+.+.. +-...+.|.++|++|.|||+||+++++....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 4578999999988877632 1123456889999999999999999997643
No 200
>PRK09183 transposase/IS protein; Provisional
Probab=96.85 E-value=0.0035 Score=69.39 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
...+.|+|.+|+|||+||.+++.........+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34678999999999999999988754433233344
No 201
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.85 E-value=0.0031 Score=73.38 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=42.5
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc--ccccceeee
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD--QFEHRSFIS 240 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 240 (1382)
..+++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4577888899999888863 346778999999999999999997643 345555554
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.84 E-value=0.015 Score=59.71 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
...||-++.++.+.-.-.. .+.+-+.|.||+|+||||-+..+++++-+
T Consensus 27 ~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4689999999888766643 46777889999999999999999997543
No 203
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.042 Score=69.84 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHhcCC-------CCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 182 AYNVGLDFRIKEVIRLLDVK-------SSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..++|-+..++.|.+.+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999998877521 11245788999999999999999998773
No 204
>PRK10536 hypothetical protein; Provisional
Probab=96.80 E-value=0.011 Score=63.61 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=39.1
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHH-H-hcccccce
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNK-L-VDQFEHRS 237 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~ 237 (1382)
..+.+|......+..++.. ..+|.+.|.+|.|||+||.+++.+ + ...|+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3467788888888888853 248999999999999999999884 3 34454333
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.79 E-value=0.0025 Score=64.27 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=25.1
Q ss_pred cccEEecCCCcCCCcCCCCCCCCcccEEeccCccccccccccccCCCCCceEeccCC
Q 000630 671 NLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDC 727 (1382)
Q Consensus 671 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~ 727 (1382)
+...+||++| .+..++.|..++.|..|.|.+|.+...-|.--..+++|..|.|.+|
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3445555555 2233344555555555555555444333322223344444444443
No 206
>PRK06526 transposase; Provisional
Probab=96.79 E-value=0.003 Score=69.47 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
..-+.++|++|+|||+||.+++.....+-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34688999999999999999998765443333343
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.018 Score=74.57 Aligned_cols=172 Identities=21% Similarity=0.216 Sum_probs=93.8
Q ss_pred CcccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCC
Q 000630 182 AYNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQND 250 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 250 (1382)
..+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +. +..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~-----v~~-- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IA-----VRG-- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EE-----Eeh--
Confidence 4578888888888776531 112345688999999999999999999765332 21 110
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHH-HHHHcCCcEEEEEcCCCCh--------------HHHhhHhcC
Q 000630 251 GLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEI-KNVVRERKVFVVLDDVDDP--------------SQLNALCGD 315 (1382)
Q Consensus 251 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~r~LlVLDdv~~~--------------~~l~~l~~~ 315 (1382)
. .++.... ...+..+..+ ...-...+.+|++|+++.. ..+..++..
T Consensus 521 --~----~l~~~~v-------------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ 581 (733)
T TIGR01243 521 --P----EILSKWV-------------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE 581 (733)
T ss_pred --H----HHhhccc-------------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 0 1111100 0011122222 2222456789999998542 112333333
Q ss_pred CCcC--CCCCeEEEEeCCCCcccc-----CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh
Q 000630 316 KEWF--SEGSRIIITTRDRGALPE-----HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP 387 (1382)
Q Consensus 316 ~~~~--~~gs~IliTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 387 (1382)
.+.. ..+.-||.||.....+.. ...+..+.++..+.++-.++|..+.-+.....+ .....+++.+.|.-
T Consensus 582 ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 582 MDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred hhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 2211 234456667755433221 123568899999999999999765532221111 11345666776654
No 208
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.76 E-value=0.0016 Score=67.52 Aligned_cols=36 Identities=36% Similarity=0.348 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..-+.++|.+|+|||.||.++++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 346889999999999999999997665444455664
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.04 Score=62.61 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKV 269 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 269 (1382)
..+.+.+.+..+. -.....+.|+.|+||+++|++++..+--.-... ....+.-...+.+.. +...
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~----------~~~Cg~C~sC~~~~~----g~HP 74 (325)
T PRK06871 10 TYQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG----------DQPCGQCHSCHLFQA----GNHP 74 (325)
T ss_pred HHHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHhc----CCCC
Confidence 3455666665432 235677899999999999999998653211100 000011111111110 0000
Q ss_pred CCCC-CC-ccc-chhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-
Q 000630 270 PTEN-VP-TEN-VVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE- 337 (1382)
Q Consensus 270 ~~~~-~~-~~~-~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~- 337 (1382)
.... .+ ... ---+.++.+.+.+ .+++-++|+|+++.. ....+|+..+....+++.+|++|.+. .+++.
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 0000 00 000 0011122222222 245567889999875 34556666666657788888887765 34433
Q ss_pred CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 338 HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 338 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
......+.+.+++.+++.+.+..... . .+ ..+...++.++|.|+.
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~-~---~~---~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSS-A---EI---SEILTALRINYGRPLL 199 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhc-c---Ch---HHHHHHHHHcCCCHHH
Confidence 23467899999999999999986541 1 11 2356678889999963
No 210
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.041 Score=63.20 Aligned_cols=183 Identities=16% Similarity=0.077 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCC
Q 000630 189 FRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNK 268 (1382)
Q Consensus 189 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 268 (1382)
...+++.+.+..+ .-..-..+.|+.|+||+++|.+++..+--.-+.. ....+.-.--+.+......+..
T Consensus 9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~----------~~~Cg~C~sC~~~~~g~HPD~~ 77 (334)
T PRK07993 9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQG----------HKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_pred HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHHcCCCCCEE
Confidence 3446666776543 2345677999999999999999998653210000 0000000001111000000000
Q ss_pred -CCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-cccc-C
Q 000630 269 -VPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-ALPE-H 338 (1382)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~~~-~ 338 (1382)
..++.....-.+ +.++.+.+.+ .+++-++|+|+++.. ..-.+|+..+....+++.+|++|.+.+ +++. .
T Consensus 78 ~i~p~~~~~~I~i-dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 78 TLTPEKGKSSLGV-DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred EEecccccccCCH-HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000000000001 1122232222 245668889999874 345566666666577888887777653 4432 2
Q ss_pred CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHH
Q 000630 339 YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 339 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
.....+.+.+++.+++.+.+.... + . . .+.+..+++.++|.|...
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~--~-~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T--M-S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C--C-C---HHHHHHHHHHcCCCHHHH
Confidence 345688999999999998886432 1 1 1 134677899999999644
No 211
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.073 Score=60.33 Aligned_cols=181 Identities=17% Similarity=0.091 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCC-
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNK- 268 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~- 268 (1382)
..+++.+.+..+ .-...+.+.|+.|+||+++|..+++.+--.-... ..++. . ..-+.+...-..+..
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~---~~Cg~----C----~sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQS---EACGF----C----HSCELMQSGNHPDLHV 78 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC---CCCCC----C----HHHHHHHcCCCCCEEE
Confidence 345566666433 2345778999999999999999998653211100 00000 0 001111000000000
Q ss_pred CCCCCCCcccchhhcHHHHHHHH-----cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-CC
Q 000630 269 VPTENVPTENVVTANIAEIKNVV-----RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE-HY 339 (1382)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~l-----~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~-~~ 339 (1382)
..++.....-.+ +.++.+.+.+ .+++-++|+|+++.. ....+++..+....+++.+|++|.+. .+++. ..
T Consensus 79 i~p~~~~~~I~v-dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 79 IKPEKEGKSITV-EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred EecCcCCCcCCH-HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000000000011 1122222222 234557888999874 34556666666557778877777655 34432 23
Q ss_pred CccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 340 VNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 340 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
....+.+.+++.+++.+.+.... . . .+..+++.++|.|+....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 46789999999999999887432 1 1 1346788999999976544
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.0041 Score=70.90 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=28.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..+.++|.+|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56889999999999999999998766544555654
No 213
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.00044 Score=84.22 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=61.9
Q ss_pred CCceeeeeE-------EEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcc
Q 000630 1228 RNHKIEGVI-------IGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRP 1300 (1382)
Q Consensus 1228 ~~~~~~g~~-------~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~ 1300 (1382)
.+.+|.|.+ .-..||||.+.+.... ..-.+|+.|.+.++...|+|+|+|.|.|..++-+..|+|||..|.
T Consensus 499 FGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~---~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GD 575 (774)
T KOG1026|consen 499 FGKVFLAEAYGLLPGQDEQLVAVKALKDKAEN---QARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGD 575 (774)
T ss_pred hhhhhhhhccCCCCCccceehhHhhhcccccH---HHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEeccccc
Confidence 355666655 3456999999653311 124689999999999999999999999999999999999999999
Q ss_pred hhhccc
Q 000630 1301 LVSMLK 1306 (1382)
Q Consensus 1301 l~~~L~ 1306 (1382)
|.++|.
T Consensus 576 L~eFLr 581 (774)
T KOG1026|consen 576 LHEFLR 581 (774)
T ss_pred HHHHHH
Confidence 998874
No 214
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.66 E-value=0.02 Score=64.29 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=26.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+.++|||++|.|||.+|++++.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 356899999999999999999999987543
No 215
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.64 E-value=0.00082 Score=77.73 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=65.7
Q ss_pred ccCCceeeeeEEEEE-EecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCC-CeeEEeecCCCcchhh
Q 000630 1226 ERRNHKIEGVIIGVV-VSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDE-CQVYLCRFPGFRPLVS 1303 (1382)
Q Consensus 1226 ~~~~~~~~g~~~~~v-va~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~-~~llv~~~~~~g~l~~ 1303 (1382)
...+.+|+|...|.. ||+|........... ...|..|+..+.+.+|+|+|.++|.|.... ...+|.|||++|+|.+
T Consensus 52 G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~--~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~ 129 (362)
T KOG0192|consen 52 GSFGTVYKGKWRGTDVVAVKIISDPDFDDES--RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSV 129 (362)
T ss_pred CCceeEEEEEeCCceeEEEEEecchhcChHH--HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHH
Confidence 345778899998877 999988543322211 468999999999999999999999999876 6889999999999999
Q ss_pred cccC
Q 000630 1304 MLKD 1307 (1382)
Q Consensus 1304 ~L~~ 1307 (1382)
.||.
T Consensus 130 ~l~~ 133 (362)
T KOG0192|consen 130 LLHK 133 (362)
T ss_pred HHhh
Confidence 9987
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.59 E-value=0.0087 Score=65.36 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 193 EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 193 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.|-++|..+-..-.++.|+|.+|.|||++|.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555444345679999999999999999999987766656777876
No 217
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0026 Score=64.12 Aligned_cols=103 Identities=18% Similarity=0.078 Sum_probs=66.7
Q ss_pred ccceeEecCCCCccccccccCccccccccEEecCCCcCCCcCCCCC-CCCcccEEeccCcccccccc-ccccCCCCCceE
Q 000630 645 FQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPDLS-EHQKLEKLVLERCCRLTKIH-ESVGNLSSLLHL 722 (1382)
Q Consensus 645 ~~L~~L~Ls~~~i~~l~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L 722 (1382)
.+...+||+.|.+..+. .+..+++|.+|.|++|++...-|.+. .+++|..|.|.+|++..... .-+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc---cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 35667777777776653 45667777788888777776667653 45668888888776433211 235667788888
Q ss_pred eccCCCCCccC---CccCCCCCCCCEEEccC
Q 000630 723 NLRDCRNLIEL---PSDVSGLKHLENLILSD 750 (1382)
Q Consensus 723 ~L~~~~~~~~l---p~~i~~l~~L~~L~Ls~ 750 (1382)
.+-+|.....- --.+..+++|++||.++
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88776543311 01256788888888875
No 218
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.54 E-value=0.05 Score=69.77 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCccc-----------cCcccchhHHHHHHHHHhcC----CCCCcEEEEEEcCCCChHHHHH
Q 000630 158 EEQLVQLLVKRVLAELSNTPMKV-----------AAYNVGLDFRIKEVIRLLDV----KSSNVLVLGLFGLGGIGKTTLA 222 (1382)
Q Consensus 158 e~~~i~~i~~~v~~~l~~~~~~~-----------~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA 222 (1382)
|...++.-.+.+..-+|...... ....+|.+.-.+.|.++|.. ......++.++|++|+||||+|
T Consensus 287 e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 287 EATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 66666666666665555433222 14579999999999888763 1123568999999999999999
Q ss_pred HHHHHHHhccc
Q 000630 223 KAVYNKLVDQF 233 (1382)
Q Consensus 223 ~~~~~~~~~~f 233 (1382)
+.++......|
T Consensus 367 ~~ia~~l~~~~ 377 (784)
T PRK10787 367 QSIAKATGRKY 377 (784)
T ss_pred HHHHHHhCCCE
Confidence 99998765443
No 219
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.50 E-value=0.057 Score=70.03 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=39.7
Q ss_pred CcccchhHHHHHHHHHhcC----CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 182 AYNVGLDFRIKEVIRLLDV----KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
...+|.+...+.|.+++.. .....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3478988888888876542 122345788999999999999999999876544
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.18 Score=57.76 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCC-Ccccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCC
Q 000630 294 RKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDR-GALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPT 369 (1382)
Q Consensus 294 ~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 369 (1382)
++-++|+|+++.. .....|+..+....+++.+|++|.+. .+++. ......+.+.+++.++..+.+.... .+
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~- 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA- 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC-
Confidence 4557888999864 45666666666667788777766654 44433 2345789999999999999997542 11
Q ss_pred chHHHHHHHHHHHhCCChHHHHHH
Q 000630 370 DKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 370 ~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
+ ...++..++|.|.....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999754433
No 221
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.035 Score=65.21 Aligned_cols=49 Identities=31% Similarity=0.251 Sum_probs=39.7
Q ss_pred CcccchhHHHHHHHHHhcCC----------CCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 182 AYNVGLDFRIKEVIRLLDVK----------SSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..+=|.+..+++|.+++..- -...|-|.++|++|+|||.||++++.+..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~ 248 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG 248 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC
Confidence 45679999999998887531 12467788999999999999999999764
No 222
>PRK04132 replication factor C small subunit; Provisional
Probab=96.48 E-value=0.073 Score=67.74 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=89.9
Q ss_pred CCCChHHHHHHHHHHHHhc-ccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH
Q 000630 213 LGGIGKTTLAKAVYNKLVD-QFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV 291 (1382)
Q Consensus 213 ~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 291 (1382)
+.|+||||+|.++++++-. .+...+.-.+ ++...++..+. +++..+.... +. -
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~-------~~--------------~ 627 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTK-------PI--------------G 627 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcC-------Cc--------------C
Confidence 6699999999999998633 2332322222 34334454433 3333332110 00 0
Q ss_pred cCCcEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCC
Q 000630 292 RERKVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGREN 367 (1382)
Q Consensus 292 ~~~r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 367 (1382)
..+.-++|+|+++.. +...+|+.........+++|++|.+.. +... ...+..+++.+++.++..+.+.+.+-...-
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 124579999999875 355666665555556777777776543 3222 234678999999999998888765432111
Q ss_pred CCchHHHHHHHHHHHhCCChHHH
Q 000630 368 PTDKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 368 ~~~~~~~~~~~i~~~~~g~PLal 390 (1382)
..+ .+....|++.++|-+-..
T Consensus 708 ~i~--~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 708 ELT--EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CCC--HHHHHHHHHHcCCCHHHH
Confidence 111 256778999999988543
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.46 E-value=0.036 Score=65.63 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=25.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+|.++|.+|+||||.|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877654
No 224
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0019 Score=68.24 Aligned_cols=65 Identities=32% Similarity=0.456 Sum_probs=45.8
Q ss_pred ccCCCCcceecccCc--ccCCCCCCccCCCCCCCEeeccCCCCCcCc--hhccCCcccceeecccccCC
Q 000630 1056 FCNLSSLEELDAQGW--RIGGKIPDDFEKLSSLEILNLGNNNFCNLP--SSLRGLSHLKNLLLPYCQEL 1120 (1382)
Q Consensus 1056 l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~Ls~n~~l 1120 (1382)
+..+++|+.|.+|.| ++++..+--...+++|++|+|++|+++.+. ..+..+.+|..|++.+|.-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 445677888888888 666655555566788888888888877321 23566777888888888744
No 225
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.46 E-value=0.0045 Score=66.31 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.++|+|..|.||||++..+.......|++++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999999999997666554
No 226
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.46 E-value=0.042 Score=61.31 Aligned_cols=37 Identities=35% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
-++++...+.. + +-|.++|.+|+|||++|++++....
T Consensus 10 l~~~~l~~l~~---g-~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKS---G-YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhc---C-CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34445555542 2 3456899999999999999998653
No 227
>PRK06921 hypothetical protein; Provisional
Probab=96.40 E-value=0.0034 Score=69.64 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=28.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 240 (1382)
...+.++|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578899999999999999999987665 44455654
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=96.40 E-value=0.046 Score=62.42 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999876654
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.032 Score=66.67 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=83.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
..-|.|.|..|+|||+||+++++.+.. +..+++.-+.........+..+|+.+-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~------------------------ 484 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLN------------------------ 484 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHH------------------------
Confidence 456789999999999999999998764 333444332222222223444443331
Q ss_pred HHHHHHHcCCcEEEEEcCCCChH--------H-------HhhHhcC-CC-cCCCCCe--EEEEeCCCC-----ccccCCC
Q 000630 285 AEIKNVVRERKVFVVLDDVDDPS--------Q-------LNALCGD-KE-WFSEGSR--IIITTRDRG-----ALPEHYV 340 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~~--------~-------l~~l~~~-~~-~~~~gs~--IliTTR~~~-----~~~~~~~ 340 (1382)
..+-+.+...+-+|||||++-.. | +..++.. .. ....+.+ +|-|..... +......
T Consensus 485 ~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~F 564 (952)
T KOG0735|consen 485 NVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLF 564 (952)
T ss_pred HHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccce
Confidence 12233455678899999985321 1 1111100 00 0123333 333433221 1112223
Q ss_pred ccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-hHHHHHH
Q 000630 341 NQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGL-PLALEVF 393 (1382)
Q Consensus 341 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 393 (1382)
.....++.++..+--++++.. |.... .+..++...-+..+|+|. |.-+.++
T Consensus 565 q~~~~L~ap~~~~R~~IL~~~-~s~~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 565 QIVIALPAPAVTRRKEILTTI-FSKNL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EEEEecCCcchhHHHHHHHHH-HHhhh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 346788888888877777743 33222 112223333377777764 4444444
No 230
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.045 Score=61.01 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
..++++++|++|+||||++..++..+...-..+.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999999999999998776543333334
No 231
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0035 Score=67.53 Aligned_cols=80 Identities=31% Similarity=0.458 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH----hcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccch
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL----VDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVV 280 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 280 (1382)
-|+|.++|++|.|||+|.+++++++ .++|..+..+. .. -..+..+-..+ ....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-----in----shsLFSKWFsE-------------SgKlV 234 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-----IN----SHSLFSKWFSE-------------SGKLV 234 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE-----Ee----hhHHHHHHHhh-------------hhhHH
Confidence 5899999999999999999999964 35566665554 11 12222222222 12234
Q ss_pred hhcHHHHHHHHcCCc--EEEEEcCCCCh
Q 000630 281 TANIAEIKNVVRERK--VFVVLDDVDDP 306 (1382)
Q Consensus 281 ~~~~~~l~~~l~~~r--~LlVLDdv~~~ 306 (1382)
....+.+.+.+.++. +.+.+|.|+..
T Consensus 235 ~kmF~kI~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 235 AKMFQKIQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeHHHHHH
Confidence 455666777776654 55667988653
No 232
>PHA00729 NTP-binding motif containing protein
Probab=96.33 E-value=0.0055 Score=64.87 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999764
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.31 E-value=0.019 Score=65.03 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.+-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456889999999999999999998865544455554
No 234
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.31 E-value=0.032 Score=58.08 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=40.6
Q ss_pred CcccchhHHHHHHHHHhcC--CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccc
Q 000630 182 AYNVGLDFRIKEVIRLLDV--KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH 235 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 235 (1382)
..++|.|...+.|.+--.. ..-...-|.+||.-|.||+.|++++.+.+..+.-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3579999888888653221 22234567899999999999999999998876654
No 235
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.27 E-value=0.029 Score=57.28 Aligned_cols=44 Identities=30% Similarity=0.274 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 186 GLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 186 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
|-++.++.|.+.+..+ .-...+.++|..|+||+++|.++++.+-
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566677787777643 2244678999999999999999998653
No 236
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.27 E-value=0.012 Score=63.48 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=34.5
Q ss_pred HhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 197 LLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 197 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
+|..+-..-+++.|+|.+|.|||++|.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333345679999999999999999999987766666788886
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.26 E-value=0.14 Score=61.66 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=116.5
Q ss_pred ccCcccchhHHHHHHHHHhcC--CC-CCcEEEEEEcCCCChHHHHHHHHHHHHh--------cccccceeeeeccccccC
Q 000630 180 VAAYNVGLDFRIKEVIRLLDV--KS-SNVLVLGLFGLGGIGKTTLAKAVYNKLV--------DQFEHRSFISNVRETSGQ 248 (1382)
Q Consensus 180 ~~~~~vGr~~~l~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~--------~~f~~~~~~~~~~~~~~~ 248 (1382)
++..+-+||.+..+|...+.. .. .....+-|.|.+|.|||..+..|.+.+. ..|++ +.+. .-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veIN-----gm~ 467 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEIN-----GLR 467 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEc-----cee
Confidence 567789999999999988764 11 2345888999999999999999998554 13432 2333 222
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHc-----CCcEEEEEcCCCCh-----HHHhhHhcCCCc
Q 000630 249 NDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVR-----ERKVFVVLDDVDDP-----SQLNALCGDKEW 318 (1382)
Q Consensus 249 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~r~LlVLDdv~~~-----~~l~~l~~~~~~ 318 (1382)
-.+..++...|...+.+.. .......+.+..+.. .+..++++|+++.. +.+..+ ++|
T Consensus 468 l~~~~~~Y~~I~~~lsg~~----------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdW 534 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGER----------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDW 534 (767)
T ss_pred ecCHHHHHHHHHHhcccCc----------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcC
Confidence 3357788888888876432 123334455555544 35688999998653 233333 445
Q ss_pred C-CCCCeEEEEeCCC-----------CccccCCCccEEEcCCCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCC
Q 000630 319 F-SEGSRIIITTRDR-----------GALPEHYVNQLYEVQKLDSSRALQLFSYHALGRENP-TDKFFKISEQIVSLTGG 385 (1382)
Q Consensus 319 ~-~~gs~IliTTR~~-----------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~g 385 (1382)
. .++|+++|-+=.. .+.... ....+...+.++.+-.+....+.-+...- .+..+-+|++++.-.|.
T Consensus 535 pt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 535 PTLKNSKLVVIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred CcCCCCceEEEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 4 4788877765321 111122 12356777888888777777655333211 12222344455554555
Q ss_pred ChHHHHHHHh
Q 000630 386 LPLALEVFGA 395 (1382)
Q Consensus 386 ~PLal~~~g~ 395 (1382)
.-.|+.+.-+
T Consensus 614 aRraldic~R 623 (767)
T KOG1514|consen 614 ARRALDICRR 623 (767)
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 238
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.25 E-value=0.013 Score=60.36 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999997765444555654
No 239
>PRK07261 topology modulation protein; Provisional
Probab=96.24 E-value=0.0083 Score=61.98 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0047 Score=60.05 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=29.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc-cccc-eeeeecc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHR-SFISNVR 243 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~~~~ 243 (1382)
--|+|.||+|+||||+++.+++.++.. |... +|...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 357899999999999999999988766 6544 4444444
No 241
>PRK08118 topology modulation protein; Reviewed
Probab=96.23 E-value=0.0079 Score=61.81 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=25.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc---cccccee
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVD---QFEHRSF 238 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 238 (1382)
.|.|+|++|+||||||++++++..- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 4789999999999999999997643 3555544
No 242
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0039 Score=60.51 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 243
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.035 Score=66.21 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=80.4
Q ss_pred chhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHH
Q 000630 186 GLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVS 254 (1382)
Q Consensus 186 Gr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 254 (1382)
|.|+...+|.+...- +-...+-|..+|+||+|||++|+++++.-.-.|-.+ ..+
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----------kgp----- 502 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----------KGP----- 502 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----------cCH-----
Confidence 466666666654321 223567788999999999999999999765444221 110
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHH-HHcCCcEEEEEcCCCChH-------------HHhhHhcCCCcCC
Q 000630 255 LQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKN-VVRERKVFVVLDDVDDPS-------------QLNALCGDKEWFS 320 (1382)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVLDdv~~~~-------------~l~~l~~~~~~~~ 320 (1382)
+++.... .+.+..+..+-+ .-+-.+.+|.||.++... .+..++...+...
T Consensus 503 ---EL~sk~v-------------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 503 ---ELFSKYV-------------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred ---HHHHHhc-------------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 1111111 011112222222 112356788888775421 2444444444333
Q ss_pred CCCeEEE--Ee-CCCCcccc----CCCccEEEcCCCCHHHHHHHHHHhhcC
Q 000630 321 EGSRIII--TT-RDRGALPE----HYVNQLYEVQKLDSSRALQLFSYHALG 364 (1382)
Q Consensus 321 ~gs~Ili--TT-R~~~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 364 (1382)
....|+| .| |...+... ...++.+.++.-+.+.-.++|+.++-+
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3334444 33 43322221 224678889888888889999988843
No 244
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.046 Score=65.28 Aligned_cols=186 Identities=16% Similarity=0.140 Sum_probs=104.0
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
+.+||-+.-.+.|...+..+. -..--...|+-|+||||+|+-++.-+--.= + . ...+.+--...+.+..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~----~-~-----~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN----G-P-----TAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC----C-C-----CCCcchhhhhhHhhhc
Confidence 457999999999999997543 233445789999999999999998542110 0 0 0111111111111111
Q ss_pred HhhCCCCCCCCCCCcccchhhcHHHHHHHH--------cCCcEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEEEeCC
Q 000630 262 DLSSGNKVPTENVPTENVVTANIAEIKNVV--------RERKVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIIITTRD 331 (1382)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IliTTR~ 331 (1382)
. . ..+...-......+++.+++.. .++.=+.|+|.|.- ...+.+|+..+....+....|..|.+
T Consensus 85 g----~--~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 85 G----S--LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred C----C--cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 0 0 0000000000111223333322 23455788999964 45688888877766677777777766
Q ss_pred CCccc--cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000630 332 RGALP--EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGL 386 (1382)
Q Consensus 332 ~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 386 (1382)
.+-.+ .....+.|.++.++.++-...+...+-...-.. ..+....|++..+|.
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs 213 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGS 213 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCC
Confidence 54222 224567899999999998888876553222211 124445566665553
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.059 Score=61.61 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=25.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
..++|+++|.+|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999999876544
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.18 E-value=0.0049 Score=69.83 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=41.2
Q ss_pred cccchhHHHHHHHHHhcCC----CCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 183 YNVGLDFRIKEVIRLLDVK----SSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
.++|.++.++++.+++... ....++++++|++|.||||||.++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999988642 224588999999999999999999987643
No 247
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.18 E-value=0.0097 Score=67.72 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc-ccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCC
Q 000630 194 VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF-EHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTE 272 (1382)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 272 (1382)
+.+.+..-..+ ..++|+|.+|+|||||++.+++.+.... +..+++.-+.+ ....+.++.+.+...+.... .
T Consensus 123 vID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast----~ 194 (380)
T PRK12608 123 VVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYAST----F 194 (380)
T ss_pred hhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeec----C
Confidence 55555432223 4568999999999999999999876654 33233333333 34566777777766544211 0
Q ss_pred CCCccc--chhhcHHHHHHHH--cCCcEEEEEcCCCCh
Q 000630 273 NVPTEN--VVTANIAEIKNVV--RERKVFVVLDDVDDP 306 (1382)
Q Consensus 273 ~~~~~~--~~~~~~~~l~~~l--~~~r~LlVLDdv~~~ 306 (1382)
+.+... ........+.+++ .+++++||+|++...
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 001110 1111111222222 468999999998654
No 248
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.17 E-value=0.0076 Score=63.14 Aligned_cols=125 Identities=25% Similarity=0.311 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHH--hcccccceeeeeccccccCCCC--HHHHHHH-----
Q 000630 188 DFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKL--VDQFEHRSFISNVRETSGQNDG--LVSLQNK----- 258 (1382)
Q Consensus 188 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~--~~~l~~~----- 258 (1382)
..+-+...+.|. +..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+ +.+.-+ .-.+.++
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~-~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE-AGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S---TT----SS---------TTT
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC-CccccccCCCCHHHHHHHHH
Confidence 334444555554 34588999999999999999998643 356776666643221 111110 0111111
Q ss_pred --HHHHhhCCCCCCCCCCCcccchhhcHHHHH----------HHHcC---CcEEEEEcCCCC--hHHHhhHhcCCCcCCC
Q 000630 259 --LIFDLSSGNKVPTENVPTENVVTANIAEIK----------NVVRE---RKVFVVLDDVDD--PSQLNALCGDKEWFSE 321 (1382)
Q Consensus 259 --ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~----------~~l~~---~r~LlVLDdv~~--~~~l~~l~~~~~~~~~ 321 (1382)
+...+..- . .....+.+. ..+++ ...+||+|++.+ ..++..++.. .+.
T Consensus 81 ~p~~d~l~~~--------~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~ 145 (205)
T PF02562_consen 81 RPIYDALEEL--------F----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGE 145 (205)
T ss_dssp HHHHHHHTTT--------S-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-T
T ss_pred HHHHHHHHHH--------h----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCC
Confidence 11111100 0 001111111 12333 257999999965 5688887754 489
Q ss_pred CCeEEEEeCCC
Q 000630 322 GSRIIITTRDR 332 (1382)
Q Consensus 322 gs~IliTTR~~ 332 (1382)
||+||++--..
T Consensus 146 ~skii~~GD~~ 156 (205)
T PF02562_consen 146 GSKIIITGDPS 156 (205)
T ss_dssp T-EEEEEE---
T ss_pred CcEEEEecCce
Confidence 99999987644
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.14 E-value=0.021 Score=62.05 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..|-++|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566544345679999999999999999999987765555666775
No 250
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.14 E-value=0.0072 Score=66.13 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=33.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRE 244 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 244 (1382)
-+.++|.|.+|+||||||+.+++..+.+|...+++.-+++
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe 108 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE 108 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 3468999999999999999999998888877777776655
No 251
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.021 Score=70.91 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=69.5
Q ss_pred CcccchhHHHHHHHHHhcC-------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDV-------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVS 254 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 254 (1382)
..++|-+..++.+.+.+.. ......+....|+.|||||-||++++..+-+.=+..+-++ +.+ ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSE----y~---- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSE----YM---- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHH----HH----
Confidence 5789999999999887643 1123557777999999999999999997654323333332 222 11
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcE-EEEEcCCCC--hHHHhhHhcCCCc
Q 000630 255 LQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKV-FVVLDDVDD--PSQLNALCGDKEW 318 (1382)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVLDdv~~--~~~l~~l~~~~~~ 318 (1382)
.+.-++.|.+ .|+ .--..++ -..+-+..++++| +|.||+|+. ++.++-|+..++.
T Consensus 562 -EkHsVSrLIG---aPP----GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 -EKHSVSRLIG---APP----GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -HHHHHHHHhC---CCC----CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1112233322 111 1101111 2344555667776 888899975 5556666655443
No 252
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.08 E-value=0.028 Score=73.28 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHhcCC------CC-CcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVK------SS-NVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++|.+..++.|.+.+... ++ ...++.++|+.|+|||++|+.+++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999988877531 11 2347889999999999999999986643
No 253
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.07 E-value=0.087 Score=62.30 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 254
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.07 E-value=0.012 Score=62.58 Aligned_cols=109 Identities=12% Similarity=0.087 Sum_probs=60.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
.+|.|+|+.|.||||++..++..+.......++.. ..+. ....... ..+... .....+.....+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~------e~~~--E~~~~~~-~~~i~q-------~~vg~~~~~~~~ 65 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI------EDPI--EFVHESK-RSLINQ-------REVGLDTLSFEN 65 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE------cCCc--cccccCc-cceeee-------cccCCCccCHHH
Confidence 36899999999999999998887765444444432 1110 0000000 000000 000111223455
Q ss_pred HHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCC
Q 000630 286 EIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRG 333 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~ 333 (1382)
.++..++..+=.+++|++.+.+.+....... ..|..++.|+-...
T Consensus 66 ~i~~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 66 ALKAALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred HHHHHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 6777787778899999998877665543321 34555666665543
No 255
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.06 E-value=0.041 Score=60.15 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=96.4
Q ss_pred cCcccchhHHHHHHHHHhcCC--CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeecccccc-CCCCHHHHHH
Q 000630 181 AAYNVGLDFRIKEVIRLLDVK--SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSG-QNDGLVSLQN 257 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~ 257 (1382)
...++|-.++-+.+.+++... -+...-|.|+|+.|.|||+|......+ ...|.-...+........ +.-.+..+.+
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 456899999999998887531 123345779999999999998877665 333444444433322111 1223445555
Q ss_pred HHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcC------CcEEEEEcCCCChH----H--HhhHhc-CCCcCCCCCe
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRE------RKVFVVLDDVDDPS----Q--LNALCG-DKEWFSEGSR 324 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~r~LlVLDdv~~~~----~--l~~l~~-~~~~~~~gs~ 324 (1382)
++..++... .....+..+....+...|+. -++.+|+|.+|-.. | +-.+.. ......|-+-
T Consensus 102 ql~~e~~~~-------~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pici 174 (408)
T KOG2228|consen 102 QLALELNRI-------VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICI 174 (408)
T ss_pred HHHHHHhhh-------heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEE
Confidence 555554432 12223344455566655543 36899999886421 1 222211 1112257778
Q ss_pred EEEEeCCC-------CccccCCCccEEEcCCCCHHHHHHHHHH
Q 000630 325 IIITTRDR-------GALPEHYVNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 325 IliTTR~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
|-+|||-. .|-.......++-++.++-+|-.++++.
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHH
Confidence 88999843 2222222223566666676776666664
No 256
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.01 E-value=0.0033 Score=72.92 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCceeeeeE--EEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcchhhcc
Q 000630 1228 RNHKIEGVI--IGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRPLVSML 1305 (1382)
Q Consensus 1228 ~~~~~~g~~--~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~L 1305 (1382)
.+.+|.|++ ....||||-+.+|.+ + +.+|..|.-.+..++|+|+|.|.|.|..+---..|.|||++|+|-+.|
T Consensus 280 YGeVYeGvWKkyslTvAVKtLKEDtM----e-veEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYL 354 (1157)
T KOG4278|consen 280 YGEVYEGVWKKYSLTVAVKTLKEDTM----E-VEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYL 354 (1157)
T ss_pred ccceeeeeeeccceeeehhhhhhcch----h-HHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHH
Confidence 467888888 566789999976542 1 478999988888999999999999999887778888999999999988
Q ss_pred cCCc
Q 000630 1306 KDGY 1309 (1382)
Q Consensus 1306 ~~~~ 1309 (1382)
..-+
T Consensus 355 Recn 358 (1157)
T KOG4278|consen 355 RECN 358 (1157)
T ss_pred HHhc
Confidence 8654
No 257
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.088 Score=55.29 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=95.7
Q ss_pred CcccchhHHHHH---HHHHhcCC----CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHH
Q 000630 182 AYNVGLDFRIKE---VIRLLDVK----SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVS 254 (1382)
Q Consensus 182 ~~~vGr~~~l~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 254 (1382)
+..||-+..... |++.|... .-..+-|..+|++|.|||.+|++++++..--| +. +.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-----vk------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-----VK------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-----ec-------
Confidence 457787765543 45555431 12467889999999999999999999754322 21 00
Q ss_pred HHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh--------------HHHhhHhcCCCcC
Q 000630 255 LQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP--------------SQLNALCGDKEWF 319 (1382)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~--------------~~l~~l~~~~~~~ 319 (1382)
..+++.+-. .+....+..+-++ -+.-++.+.+|.++.. +.+.+|+...+..
T Consensus 184 -at~liGehV-------------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi 249 (368)
T COG1223 184 -ATELIGEHV-------------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI 249 (368)
T ss_pred -hHHHHHHHh-------------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc
Confidence 112222211 1111222222222 2336899999988642 2356666554433
Q ss_pred --CCCCeEEEEeCCCCccccC---CCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 000630 320 --SEGSRIIITTRDRGALPEH---YVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGL 386 (1382)
Q Consensus 320 --~~gs~IliTTR~~~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 386 (1382)
+.|...|-.|.+..++... .....++..--+++|-.+++..++-.-.-+.+. -.+.++++.+|.
T Consensus 250 ~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 250 KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 3565666666655554421 123467777788999999998877322212221 144566666664
No 258
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.14 Score=53.27 Aligned_cols=144 Identities=22% Similarity=0.346 Sum_probs=80.8
Q ss_pred cchhHHHHHHHHHhcCC-----------CCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHH
Q 000630 185 VGLDFRIKEVIRLLDVK-----------SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLV 253 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 253 (1382)
=|.|..+++|.+.+... -....-|.++|++|.|||-||+++|+.- .+.|+. ++..
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-----vsgs---- 215 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-----VSGS---- 215 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-----echH----
Confidence 35567777776655321 1245678899999999999999999843 344443 2211
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH----cCCcEEEEEcCCCChH------------H----HhhHh
Q 000630 254 SLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV----RERKVFVVLDDVDDPS------------Q----LNALC 313 (1382)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVLDdv~~~~------------~----l~~l~ 313 (1382)
.+.++.+.+ +.+.+++.+ .+-+-.|..|.++... . .-.++
T Consensus 216 elvqk~ige--------------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlell 275 (404)
T KOG0728|consen 216 ELVQKYIGE--------------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELL 275 (404)
T ss_pred HHHHHHhhh--------------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHH
Confidence 122222111 112222211 2356677778775421 1 11222
Q ss_pred cCCCcC--CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 314 GDKEWF--SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 314 ~~~~~~--~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
..++.| .+..+||..|..-+++. ....++.++.++-+++.-.+.++-+.
T Consensus 276 nqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 276 NQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 222222 35678888886444433 23456678898888888888887655
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.032 Score=61.46 Aligned_cols=37 Identities=38% Similarity=0.364 Sum_probs=28.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
...-+.++|.+|+|||.||.++++++..+--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456789999999999999999999884333444543
No 260
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.97 E-value=0.028 Score=61.53 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc------ccceeee
Q 000630 193 EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF------EHRSFIS 240 (1382)
Q Consensus 193 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 240 (1382)
.|-++|..+-..-.++.|+|.+|.|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455544444567999999999999999999987654444 4567776
No 261
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.046 Score=63.66 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 183 YNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 3567777778887777643333345889999999999999999998754
No 262
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.95 E-value=0.077 Score=69.56 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=40.3
Q ss_pred cCcccchhHHHHHHHHHhcCC------CC-CcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 181 AAYNVGLDFRIKEVIRLLDVK------SS-NVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
...++|.+..++.+.+.+... ++ ...++.++|++|+|||++|+.++.....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998887531 11 2456789999999999999999997644
No 263
>PRK06696 uridine kinase; Validated
Probab=95.95 E-value=0.013 Score=63.74 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcC-CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 187 LDFRIKEVIRLLDV-KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 187 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56677777776653 33467899999999999999999999987543
No 264
>PRK04296 thymidine kinase; Provisional
Probab=95.94 E-value=0.0096 Score=62.75 Aligned_cols=114 Identities=15% Similarity=0.027 Sum_probs=61.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
.++.|+|..|.||||+|..++.+...+...++++... .....+.. .++..+... .. ........+...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~---~d~~~~~~----~i~~~lg~~----~~-~~~~~~~~~~~~ 70 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA---IDDRYGEG----KVVSRIGLS----RE-AIPVSSDTDIFE 70 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc---ccccccCC----cEecCCCCc----cc-ceEeCChHHHHH
Confidence 4778999999999999999999876654444444210 01111111 122222110 00 000112223333
Q ss_pred HHHHHHcCCcEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEEEeCCCCc
Q 000630 286 EIKNVVRERKVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIIITTRDRGA 334 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IliTTR~~~~ 334 (1382)
.+++ ..++.-+||+|.+.- .+++..+.... ...|..||+|.++...
T Consensus 71 ~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 71 LIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred HHHh-hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 3333 223556899999854 34454443321 1478899999998643
No 265
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.91 E-value=0.0013 Score=81.69 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCCCCceEeccCCCCCcc--CCccCCCCCCCCEEEccCC-CCCCCCc----ccccccCCccEEEecCcc
Q 000630 715 NLSSLLHLNLRDCRNLIE--LPSDVSGLKHLENLILSDC-SKLKELP----EDICSMRSLKELLVDGTA 776 (1382)
Q Consensus 715 ~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~Ls~~-~~~~~~p----~~l~~l~~L~~L~L~~~~ 776 (1382)
.++.|+.|.+.+|..+.. +-......++|+.|++++| ......+ .....+++|+.|+++.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 367777777777655554 2234456677777777763 2222111 122334555555555544
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=95.89 E-value=0.18 Score=59.63 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=25.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998876655
No 267
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.89 E-value=0.19 Score=59.02 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+|.++|.+|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999999876544
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0077 Score=63.73 Aligned_cols=107 Identities=22% Similarity=0.153 Sum_probs=60.4
Q ss_pred CCCCCceEeccCCCCCccCCccCCCCCCCCEEEccCC--CCCCCCcccccccCCccEEEecCccccccC--ccccCCCCC
Q 000630 715 NLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDC--SKLKELPEDICSMRSLKELLVDGTAIEKLP--QSIFHLVKL 790 (1382)
Q Consensus 715 ~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~--~~~~~~p~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L 790 (1382)
.+..|+.|++.++..++. ..+-.|++|+.|.+|.| .....++....++++|++|++++|.|..+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344455555554433221 12335677777777777 445555555566688888888888776321 124456777
Q ss_pred cEEEcCCCCCCCCC--Chhhhhhcccccccccccc
Q 000630 791 EKLNLGKCKSLKQL--PNCIGTQLIALKELSFNYS 823 (1382)
Q Consensus 791 ~~L~l~~~~~~~~l--~~~~~~~l~~L~~L~l~~n 823 (1382)
..|++.+|.....- -..++..+++|+.|+-..-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 78888887744411 1223333566666655443
No 269
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.87 E-value=0.096 Score=68.47 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHhcCC------CC-CcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVK------SS-NVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++|-+..++.|.+.+... .+ ....+.++|+.|+|||+||+.+++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 67899999999998877421 11 2345678999999999999999997643
No 270
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.077 Score=61.30 Aligned_cols=125 Identities=26% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhh
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTA 282 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 282 (1382)
.....|.+.|++|.|||+||.+++.. ..|+.+-.++ ...--++. ..+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-----pe~miG~s--------------------------Esa 582 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-----PEDMIGLS--------------------------ESA 582 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-----hHHccCcc--------------------------HHH
Confidence 35667889999999999999999874 5676543332 10001111 111
Q ss_pred cHHHH----HHHHcCCcEEEEEcCCCChHHH------------hhHhcCCCcC-CCCCe--EEEEeCCCCccccCCC---
Q 000630 283 NIAEI----KNVVRERKVFVVLDDVDDPSQL------------NALCGDKEWF-SEGSR--IIITTRDRGALPEHYV--- 340 (1382)
Q Consensus 283 ~~~~l----~~~l~~~r~LlVLDdv~~~~~l------------~~l~~~~~~~-~~gs~--IliTTR~~~~~~~~~~--- 340 (1382)
....+ .+.-++.=-.||+||++..-+| +.|+..++.. .+|-| |+-||....++..++.
T Consensus 583 Kc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~ 662 (744)
T KOG0741|consen 583 KCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDC 662 (744)
T ss_pred HHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHh
Confidence 22222 3334456678999999765332 2322222222 23444 4446666666665542
Q ss_pred -ccEEEcCCCCH-HHHHHHHHH
Q 000630 341 -NQLYEVQKLDS-SRALQLFSY 360 (1382)
Q Consensus 341 -~~~~~l~~L~~-~ea~~Lf~~ 360 (1382)
...|.|+.++. ++..+.++.
T Consensus 663 F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 663 FSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hhheeecCccCchHHHHHHHHH
Confidence 45789999977 677777764
No 271
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.83 E-value=0.24 Score=57.59 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCC-CCcEEEEEEcCCCChHHHHHHHHHHHHhcc--cccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 188 DFRIKEVIRLLDVKS-SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ--FEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 188 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
+.-.+.|.+.+.... ....+|+|.|.=|.||||+.+.+.+++... -...+...+.|.......-...+...+..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 344566777776533 567899999999999999999999988776 12223333444433323334455555555543
No 272
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.18 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..+++++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999755
No 273
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.0017 Score=80.61 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=18.5
Q ss_pred cccccEEecCCCcCCCcC---CCCCCCCcccEEeccC
Q 000630 669 AKNLMVLNLRGCWNLASI---PDLSEHQKLEKLVLER 702 (1382)
Q Consensus 669 l~~L~~L~L~~~~~~~~~---~~l~~l~~L~~L~L~~ 702 (1382)
+++|+.|.+.++...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 556666666666544431 2345555666666655
No 274
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.79 E-value=0.028 Score=72.92 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHhcC-------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDV-------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++|-+..++.+.+.+.. ......++.++|++|+|||.||+++++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5789999999999887642 1123457889999999999999999987643
No 275
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.74 E-value=0.029 Score=61.81 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc------cccceeee
Q 000630 194 VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ------FEHRSFIS 240 (1382)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 240 (1382)
|-++|..+-..-.++.|+|.+|.|||++|.+++...... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444554333456799999999999999999998543221 25677776
No 276
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.17 Score=62.64 Aligned_cols=172 Identities=20% Similarity=0.268 Sum_probs=100.0
Q ss_pred CcccchhHHHHHHHHH---hcC-------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 182 AYNVGLDFRIKEVIRL---LDV-------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~---L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
..+.|.|+..++|++. |.. +..-.+=|.++|++|.|||-||++++-+-. +=|+. ++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s-----vSGS-- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS-----VSGS-- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee-----echH--
Confidence 4678888777766654 422 112356788999999999999999997532 22333 1111
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHH----cCCcEEEEEcCCCCh-----------------HHHh
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVV----RERKVFVVLDDVDDP-----------------SQLN 310 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~r~LlVLDdv~~~-----------------~~l~ 310 (1382)
+++..+.. .+...+++.. ...+..+.+|+++.. ..+.
T Consensus 379 ------EFvE~~~g----------------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tln 436 (774)
T KOG0731|consen 379 ------EFVEMFVG----------------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLN 436 (774)
T ss_pred ------HHHHHhcc----------------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHH
Confidence 11111110 0111222222 335677888876532 2356
Q ss_pred hHhcCCCcCCCCCeEEE--EeCCCCcccc-----CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 000630 311 ALCGDKEWFSEGSRIII--TTRDRGALPE-----HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLT 383 (1382)
Q Consensus 311 ~l~~~~~~~~~gs~Ili--TTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 383 (1382)
.++...+.+.....||+ +|+..+++.. ...++.+.++.-+.....+.|..|+-...-. .+..++++ ++...
T Consensus 437 Qll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t 514 (774)
T KOG0731|consen 437 QLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLT 514 (774)
T ss_pred HHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcC
Confidence 66665555544443333 5554444332 2345678888889999999999888544332 34446666 88888
Q ss_pred CCChHH
Q 000630 384 GGLPLA 389 (1382)
Q Consensus 384 ~g~PLa 389 (1382)
-|.+=|
T Consensus 515 ~gf~ga 520 (774)
T KOG0731|consen 515 PGFSGA 520 (774)
T ss_pred CCCcHH
Confidence 887744
No 277
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.025 Score=58.97 Aligned_cols=37 Identities=38% Similarity=0.621 Sum_probs=31.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
...+|.+.|+.|.||||+|+.+++++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3458999999999999999999999887777766663
No 278
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.68 E-value=0.013 Score=58.43 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987
No 279
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.65 E-value=0.027 Score=63.57 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=36.4
Q ss_pred HHHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..|-.+|. .+-..-+++-|+|++|+||||||.+++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 33445554 33345679999999999999999999887666556677776
No 280
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.60 E-value=0.058 Score=56.06 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=23.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
++.++|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887655
No 281
>PRK09354 recA recombinase A; Provisional
Probab=95.57 E-value=0.031 Score=63.63 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=58.0
Q ss_pred HHHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCC
Q 000630 192 KEVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVP 270 (1382)
Q Consensus 192 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 270 (1382)
..|-.+|. .+-..-+++-|+|++|+||||||.+++......-..++|+. .....+.. .+..++.....-
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId-----~E~s~~~~-----~a~~lGvdld~l 115 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID-----AEHALDPV-----YAKKLGVDIDNL 115 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-----CccchHHH-----HHHHcCCCHHHe
Confidence 34555665 34445679999999999999999999887666666777876 33333321 222222110000
Q ss_pred CCCCCcccchhhcHHHHHHHHcC-CcEEEEEcCCC
Q 000630 271 TENVPTENVVTANIAEIKNVVRE-RKVFVVLDDVD 304 (1382)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVLDdv~ 304 (1382)
. .......++....+...++. ..-+||+|.|.
T Consensus 116 l--i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 116 L--VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred E--EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 0 01111234444555554443 56789999984
No 282
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.56 E-value=0.042 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
-.+++|+|..|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998863
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.19 Score=59.80 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988765
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.54 E-value=0.029 Score=63.35 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=35.6
Q ss_pred HHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 193 EVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 193 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.|-.+|. .+-..-+++-|+|.+|+||||||.+++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3445554 33345689999999999999999998887665555667775
No 285
>PRK07667 uridine kinase; Provisional
Probab=95.53 E-value=0.025 Score=59.84 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
+.+.+.+........+|+|.|.+|.||||+|..+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44555555444456899999999999999999999987653
No 286
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.089 Score=65.54 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=88.9
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeeeeccccccCCCCHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
+..+|||.++.++.+.|.....+-+ .++|-+|+|||++|.-++.++... -+. ++.+.+- .+ -++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~--~L~~~~i-~s--LD~-------- 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPE--SLKDKRI-YS--LDL-------- 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCH--HHcCCEE-EE--ecH--------
Confidence 4689999999999999976544444 368999999999999999987543 111 1111110 00 011
Q ss_pred HHhhCCCCCCCCCCCcccchhhcHHHHHHHHc-CCcEEEEEcCCCCh----------HHHhhHhcCCCcCCCCCeEEEEe
Q 000630 261 FDLSSGNKVPTENVPTENVVTANIAEIKNVVR-ERKVFVVLDDVDDP----------SQLNALCGDKEWFSEGSRIIITT 329 (1382)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVLDdv~~~----------~~l~~l~~~~~~~~~gs~IliTT 329 (1382)
..+..+ ..-.++.++....+.+.++ .+++.|.+|.+... -+...++.+.-..+.--.|=.||
T Consensus 235 g~LvAG-------akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 235 GSLVAG-------AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATT 307 (786)
T ss_pred HHHhcc-------ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEecc
Confidence 111111 2233456666666665554 35899999987432 11222222211112222344455
Q ss_pred CCC-------CccccCCCccEEEcCCCCHHHHHHHHHH
Q 000630 330 RDR-------GALPEHYVNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 330 R~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
-++ +-+- ....+.+.|...+.+++.+.++-
T Consensus 308 ~~EYRk~iEKD~AL-~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 308 LDEYRKYIEKDAAL-ERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHHHhhhchHH-HhcCceeeCCCCCHHHHHHHHHH
Confidence 322 1110 12356889999999999999874
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.49 E-value=0.06 Score=56.75 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=35.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
+++.++|+.|+||||.+.+++.+.+.+-..+.++. . -....+..+.++..+..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~---D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-A---DTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-E---STSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec-C---CCCCccHHHHHHHHHHHhc
Confidence 68999999999999999999987766633344443 1 1223344444555555543
No 288
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.45 E-value=0.13 Score=65.10 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=69.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIA 285 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (1382)
+-|.++|++|.|||++|+.++.+....|- .+. . ..+.... . + . .......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-----~------~~~~~~~----~-g--------~---~~~~~~~ 235 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-----G------SDFVEMF----V-G--------V---GASRVRD 235 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-----h------HHhHHhh----h-c--------c---cHHHHHH
Confidence 34889999999999999999887644331 111 0 0111100 0 0 0 0011112
Q ss_pred HHHHHHcCCcEEEEEcCCCChH----------------HHhhHhcCCCcC--CCCCeEEEEeCCCCcccc-----CCCcc
Q 000630 286 EIKNVVRERKVFVVLDDVDDPS----------------QLNALCGDKEWF--SEGSRIIITTRDRGALPE-----HYVNQ 342 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv~~~~----------------~l~~l~~~~~~~--~~gs~IliTTR~~~~~~~-----~~~~~ 342 (1382)
.+.......+.+|++|+++... .+..++...+.+ ..+.-+|.||...+.+.. ...++
T Consensus 236 ~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr 315 (644)
T PRK10733 236 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 315 (644)
T ss_pred HHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccce
Confidence 2222334467899999986531 233333322222 234445557765543221 12356
Q ss_pred EEEcCCCCHHHHHHHHHHhhc
Q 000630 343 LYEVQKLDSSRALQLFSYHAL 363 (1382)
Q Consensus 343 ~~~l~~L~~~ea~~Lf~~~a~ 363 (1382)
.+.++..+.++-.+++..+.-
T Consensus 316 ~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 316 QVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred EEEcCCCCHHHHHHHHHHHhh
Confidence 788988898888888887663
No 289
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.38 E-value=0.017 Score=57.91 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhh---CCCCCCCCCCCccc---c
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS---SGNKVPTENVPTEN---V 279 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~---~~~~~~~~~~~~~~---~ 279 (1382)
..|-|++-.|.||||+|...+-+...+-..+.++.-+.. ....+-....+.+ ..+. .+.+.......... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg--~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG--GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC--CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 367788888999999999999887665444444332221 1122323333322 0000 00000000000011 1
Q ss_pred hhhcHHHHHHHHcC-CcEEEEEcCCCC--------hHHHhhHhcCCCcCCCCCeEEEEeCCCC
Q 000630 280 VTANIAEIKNVVRE-RKVFVVLDDVDD--------PSQLNALCGDKEWFSEGSRIIITTRDRG 333 (1382)
Q Consensus 280 ~~~~~~~l~~~l~~-~r~LlVLDdv~~--------~~~l~~l~~~~~~~~~gs~IliTTR~~~ 333 (1382)
..+..+..++.+.. +-=|+|||++-. .+++-.++... .++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCCC
Confidence 12233444555544 446999999843 23444444332 46779999999863
No 290
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.16 Score=58.10 Aligned_cols=85 Identities=12% Similarity=0.123 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCh--HHHhhHhcCCCcCCCCCeEEEEeCCCC-cccc-CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCc
Q 000630 295 KVFVVLDDVDDP--SQLNALCGDKEWFSEGSRIIITTRDRG-ALPE-HYVNQLYEVQKLDSSRALQLFSYHALGRENPTD 370 (1382)
Q Consensus 295 r~LlVLDdv~~~--~~l~~l~~~~~~~~~gs~IliTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 370 (1382)
+-++|+|+++.. .....++........++.+|++|.+.. +... ......+.+.+++.+++.+.+.... . .+
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~---~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG--V---AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC--C---Cc
Confidence 334456888653 233333333332245677777887654 3322 1235689999999999998887532 1 11
Q ss_pred hHHHHHHHHHHHhCCChHH
Q 000630 371 KFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 371 ~~~~~~~~i~~~~~g~PLa 389 (1382)
. . ..+..++|-|+.
T Consensus 189 ~---~--~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P---E--ERLAFHSGAPLF 202 (325)
T ss_pred H---H--HHHHHhCCChhh
Confidence 1 1 113568898954
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.34 E-value=0.082 Score=58.05 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..|-++|..+-..-.++.|+|.+|+|||++|.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3344555444445678999999999999999999765434445566665
No 292
>PRK06762 hypothetical protein; Provisional
Probab=95.28 E-value=0.071 Score=54.99 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..+|.|.|++|+||||+|+++++++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999876
No 293
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.28 E-value=0.055 Score=51.72 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=53.0
Q ss_pred EEEccccccccchHHHHHHHHHHhCCcEEEEeCCCCCCCCcchHHHHHHHHhcceEEEEecCC
Q 000630 17 VFLSFRGEDTRDTITRNLYNSLHDHGVRVFKDDYGLARGDEIAPSLIDAIYDSAASIIILSPN 79 (1382)
Q Consensus 17 vfis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~ 79 (1382)
|||.|. +| ..+++.+...|+..|+.+.+=.+....|..+.+.+.+.+.+++.+|||++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899997 77 5799999999998898866555667899999999999999999999999994
No 294
>PRK13695 putative NTPase; Provisional
Probab=95.27 E-value=0.027 Score=58.59 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
.|+|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987653
No 295
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.26 E-value=0.083 Score=61.52 Aligned_cols=49 Identities=29% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.++-+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566443334578999999999999999999987766545566664
No 296
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.24 E-value=0.093 Score=57.85 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHH
Q 000630 194 VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
|-++|..+-..-+++=|+|+.|.||||+|.+++-.....-..++|++ .....++.++.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID-----tE~~l~p~r~~ 106 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID-----TEHALDPERAK 106 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe-----CCCCCCHHHHH
Confidence 33445444456789999999999999999998877666666889997 55555665543
No 297
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.31 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
|--.++|+||.|||++..++|+.+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 5567999999999999999998653
No 298
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.20 E-value=0.28 Score=60.53 Aligned_cols=46 Identities=26% Similarity=0.277 Sum_probs=36.8
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999998876432 23456799999999999999998743
No 299
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.36 Score=58.77 Aligned_cols=50 Identities=28% Similarity=0.243 Sum_probs=36.0
Q ss_pred cCcccchhHHHHHHHHHhcC----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 181 AAYNVGLDFRIKEVIRLLDV----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
-+..=|.++...+|.+-+.. +-....-|.++|++|.|||-||++|+-+..
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce
Confidence 34556777777777765532 112234677999999999999999998754
No 300
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.19 E-value=0.021 Score=56.71 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
||....++++.+.+..-......|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 466666777766665422344567899999999999999888743
No 301
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.18 E-value=0.012 Score=55.73 Aligned_cols=29 Identities=45% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhcccccc
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLVDQFEHR 236 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 236 (1382)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 57999999999999999999888777643
No 302
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.043 Score=65.76 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=42.7
Q ss_pred CcccchhHHHHHHHHHhcC----CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 182 AYNVGLDFRIKEVIRLLDV----KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
..-+|+++-.+.|.+.+.. ++.+-.++..+|++|||||.+|+.++.-+..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3458999999999888753 233567999999999999999999999876655
No 303
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.15 E-value=0.039 Score=59.40 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=67.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeee--ccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccc-h
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISN--VRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENV-V 280 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~ 280 (1382)
.-.++||+|-.|.||||+|+.+..-...... .+++.. +.. .. .....+...+++..++.... .....+..-+ -
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~-~~-~~~~~~~v~elL~~Vgl~~~-~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITK-LS-KEERRERVLELLEKVGLPEE-FLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhh-cc-hhHHHHHHHHHHHHhCCCHH-HhhcCCcccCch
Confidence 3458999999999999999999985544333 333321 100 11 11223333444444432110 0111222212 2
Q ss_pred hhcHHHHHHHHcCCcEEEEEcCCCC------hHHHhhHhcCCCcCCCCCeEEEEeCCCCccc
Q 000630 281 TANIAEIKNVVRERKVFVVLDDVDD------PSQLNALCGDKEWFSEGSRIIITTRDRGALP 336 (1382)
Q Consensus 281 ~~~~~~l~~~l~~~r~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~ 336 (1382)
+...-.+.+.|.-++-++|.|.--. ..|+-.++..+.. ..|-..+..|-|-.+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhh
Confidence 2223456777888999999997532 2344444333221 34556677776665544
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.13 E-value=0.34 Score=55.32 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
...+++++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877654
No 305
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.14 Score=60.41 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=76.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
..-|.+||++|+|||-||++|+++-.-.| +. +.. ..++..... ..+..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-----VKG----PELlNkYVG-----------------ESErAV 593 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-----VKG----PELLNKYVG-----------------ESERAV 593 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-----ecC----HHHHHHHhh-----------------hHHHHH
Confidence 34578999999999999999999865444 43 111 122222211 112222
Q ss_pred H-HHHHHHcCCcEEEEEcCCCCh-------------HHHhhHhcCCCcC--CCCCeEEEEeCCCCcccc-----CCCccE
Q 000630 285 A-EIKNVVRERKVFVVLDDVDDP-------------SQLNALCGDKEWF--SEGSRIIITTRDRGALPE-----HYVNQL 343 (1382)
Q Consensus 285 ~-~l~~~l~~~r~LlVLDdv~~~-------------~~l~~l~~~~~~~--~~gs~IliTTR~~~~~~~-----~~~~~~ 343 (1382)
+ .+++.-..-++.|.+|.++.. ..+..|+...+.. ..|.-||-.|..+++... ..-++.
T Consensus 594 R~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~ 673 (802)
T KOG0733|consen 594 RQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKL 673 (802)
T ss_pred HHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCce
Confidence 2 233333457899999998642 1244555444322 346667777755544321 223567
Q ss_pred EEcCCCCHHHHHHHHHHhhc
Q 000630 344 YEVQKLDSSRALQLFSYHAL 363 (1382)
Q Consensus 344 ~~l~~L~~~ea~~Lf~~~a~ 363 (1382)
.-|+.-+.+|-.+.++...-
T Consensus 674 LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 674 LYVGLPNAEERVAILKTITK 693 (802)
T ss_pred eeecCCCHHHHHHHHHHHhc
Confidence 78888889999999987764
No 306
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.11 E-value=0.065 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 307
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.04 Score=57.69 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=26.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
..+.+|||.|.+|.||||+|++++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999988755
No 308
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.63 Score=57.50 Aligned_cols=131 Identities=20% Similarity=0.187 Sum_probs=74.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTAN 283 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 283 (1382)
..+.+.++|++|.|||.||+++++.....|-....- . ++... ........
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--------------~----l~sk~------------vGesek~i 324 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--------------E----LLSKW------------VGESEKNI 324 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--------------H----Hhccc------------cchHHHHH
Confidence 455788999999999999999999665444221110 1 11110 01111111
Q ss_pred HHHHHHHHcCCcEEEEEcCCCCh-------------HHHhhHhcCCCcCCC--CCeEEEEeCCCCcccc-----CCCccE
Q 000630 284 IAEIKNVVRERKVFVVLDDVDDP-------------SQLNALCGDKEWFSE--GSRIIITTRDRGALPE-----HYVNQL 343 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDdv~~~-------------~~l~~l~~~~~~~~~--gs~IliTTR~~~~~~~-----~~~~~~ 343 (1382)
.+......+..+..|.+|.++.. ..+..++...+.... +..||-||-....... ..-+..
T Consensus 325 r~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~ 404 (494)
T COG0464 325 RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRL 404 (494)
T ss_pred HHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceE
Confidence 22233333568899999998542 123333333322233 3334445543332221 123568
Q ss_pred EEcCCCCHHHHHHHHHHhhcC
Q 000630 344 YEVQKLDSSRALQLFSYHALG 364 (1382)
Q Consensus 344 ~~l~~L~~~ea~~Lf~~~a~~ 364 (1382)
+.++.-+.++..+.|..+.-.
T Consensus 405 i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 405 IYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eecCCCCHHHHHHHHHHHhcc
Confidence 899999999999999987743
No 309
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.03 E-value=0.029 Score=66.87 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred cccchhHHHHHHHHHh----cCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 183 YNVGLDFRIKEVIRLL----DVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L----~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
.++|.++.+++|.+.| ..-...-+++.++|++|+||||||+.+++-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 5899999999999988 222345679999999999999999999986544
No 310
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.96 E-value=0.02 Score=56.19 Aligned_cols=22 Identities=45% Similarity=0.794 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
|+|.|++|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 311
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.95 E-value=0.066 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
|.|.|++|+||||+|+.+++++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998763
No 312
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.23 Score=58.05 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 313
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.067 Score=54.31 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=23.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
+.|.+.|.+|+||||+|+++++.++..-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4577899999999999999999776543
No 314
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=94.90 E-value=0.0089 Score=69.46 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=55.9
Q ss_pred EEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcchhhcccCC
Q 000630 1239 VVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRPLVSMLKDG 1308 (1382)
Q Consensus 1239 ~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~L~~~ 1308 (1382)
..||||.+.++.... ...+|..|+..++..+|+|++.|.|.|...+--..|.|||+||.|...|...
T Consensus 563 lkVAVK~Lr~~a~~~---~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~ah 629 (807)
T KOG1094|consen 563 LKVAVKILRPDATKN---ARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAH 629 (807)
T ss_pred eEEEEeecCcccchh---HHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhc
Confidence 459999997654322 1368999999999999999999999999988888899999999998877543
No 315
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.88 E-value=0.092 Score=60.49 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc------ccceeeeeccccccCCCCHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF------EHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
..+.++|..+-..-.++-|+|.+|+|||++|.+++....... ..++|+. ....+...++.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~-----te~~f~~~rl~ 154 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID-----TEGTFRPERIE 154 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe-----CCCCcCHHHHH
Confidence 444455654334567889999999999999999987543211 3567776 44444555544
No 316
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.87 E-value=0.24 Score=60.36 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=36.2
Q ss_pred HHHHHHcCCcEEEEEcCC------CChHHHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEcCC
Q 000630 286 EIKNVVRERKVFVVLDDV------DDPSQLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEVQK 348 (1382)
Q Consensus 286 ~l~~~l~~~r~LlVLDdv------~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l~~ 348 (1382)
.+...+-.++=+||||.= +..+.++..+..+ +| .||+.|-|+...... +.+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhh-cceEEEEcC
Confidence 344555678889999964 3345555555432 44 588888888776654 355676664
No 317
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.0045 Score=65.24 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=57.1
Q ss_pred cccccccccccccCccCChhccCCCCCCeEEecccCCCCcCCCCcCccccceeeeccCCCCcccCc--ccCCCccccccc
Q 000630 812 LIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPA--SIGSLSYLKAFS 889 (1382)
Q Consensus 812 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~ 889 (1382)
+.+.+.|++.++.+..+. ....++.|+.|.|+-|.+.+.- .+..|++|++|+|..|.|..+.. .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445556666666665442 2346677888888877765543 36677888888888888876653 466777888888
Q ss_pred ccCccCCCCCc
Q 000630 890 VGRCQFLSELP 900 (1382)
Q Consensus 890 L~~~~~~~~~~ 900 (1382)
|..|.-.+.-+
T Consensus 95 L~ENPCc~~ag 105 (388)
T KOG2123|consen 95 LDENPCCGEAG 105 (388)
T ss_pred hccCCcccccc
Confidence 87776555433
No 318
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.081 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999984
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.82 E-value=0.067 Score=53.56 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+|.+.|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 320
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.81 E-value=0.13 Score=57.07 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCc-ccchhh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPT-ENVVTA 282 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~-~~~~~~ 282 (1382)
+...++|+|..|.|||||.+.++..+... ...+++.... +...... .++......-.........+ .++...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~--v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK--VGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE--eecchhH----HHHHHHhcccccccccccccccccchH
Confidence 45688999999999999999999866543 3334443111 1100111 12221111000000000000 011111
Q ss_pred cHHHHHHHHc-CCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCCCCc
Q 000630 283 NIAEIKNVVR-ERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGA 334 (1382)
Q Consensus 283 ~~~~l~~~l~-~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~~~~ 334 (1382)
...+...+. ..+=++|+|.+...+.+..+.... ..|..||+||-+..+
T Consensus 183 -~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 -AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred -HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 222333333 578889999998877777665443 357789999987544
No 321
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.81 E-value=0.071 Score=58.95 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh--cc----cccceeeeeccccccCCCCHHHHHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV--DQ----FEHRSFISNVRETSGQNDGLVSLQNKLIF 261 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 261 (1382)
+.|-++|..+-..-.+.=|+|.+|+|||+||.+++-... .. =..++|++ ....+...++.+ ++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-----Te~~f~~~Rl~~-i~~ 94 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-----TEGTFSPERLQQ-IAE 94 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-----SSSSS-HHHHHH-HHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe-----CCCCCCHHHHHH-Hhh
Confidence 355566643333456899999999999999998876432 11 22466776 455566666653 444
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.80 E-value=0.21 Score=50.86 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHhcCCC-CCcEEEEEEcCCCChHHHHHHHHHH
Q 000630 186 GLDFRIKEVIRLLDVKS-SNVLVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 186 Gr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
|.+.-++.+.+.+.... .....|+++|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44444555544442111 1234678999999999999999875
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.76 E-value=0.038 Score=55.13 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=29.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.+|-+.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999987766666654
No 324
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.2 Score=52.17 Aligned_cols=51 Identities=33% Similarity=0.369 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 183 YNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
..=|.|-..+++.+.... +-+..|-|.++|++|.|||.||+++++.-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345666666666665421 224567889999999999999999999655443
No 325
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.69 E-value=0.8 Score=52.26 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=33.1
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCChHHH
Q 000630 343 LYEVQKLDSSRALQLFSYHALGRENPT-DKFFKISEQIVSLTGGLPLAL 390 (1382)
Q Consensus 343 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal 390 (1382)
.++|++++.+|+..++..++-.+--.. ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764322211 222345666666779999654
No 326
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.67 E-value=0.018 Score=69.38 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=66.3
Q ss_pred eeEeccCCceeeeeE-----EEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecC
Q 000630 1222 VRFTERRNHKIEGVI-----IGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFP 1296 (1382)
Q Consensus 1222 ~~~~~~~~~~~~g~~-----~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~ 1296 (1382)
+......+.+++|.+ -...||+|-+....... .-.+|..|.-.++...|+|++.|.|.-....--|.|-|||
T Consensus 636 VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gytek---qrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyM 712 (996)
T KOG0196|consen 636 VIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEK---QRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYM 712 (996)
T ss_pred EEecccccceecccccCCCCcceeEEEeeeccCccHH---HHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhh
Confidence 333344566677766 45679999886433211 1367999999999999999999999977777778888999
Q ss_pred CCcchhhcccCCc-EEEE
Q 000630 1297 GFRPLVSMLKDGY-TIQV 1313 (1382)
Q Consensus 1297 ~~g~l~~~L~~~~-~~~v 1313 (1382)
+||+|+.+|..+| .|.+
T Consensus 713 ENGsLDsFLR~~DGqftv 730 (996)
T KOG0196|consen 713 ENGSLDSFLRQNDGQFTV 730 (996)
T ss_pred hCCcHHHHHhhcCCceEe
Confidence 9999999998654 3544
No 327
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.60 E-value=0.065 Score=59.43 Aligned_cols=26 Identities=38% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+.|.|+|.||.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999997765
No 328
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.59 E-value=0.49 Score=51.69 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCccccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHH
Q 000630 176 TPMKVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSL 255 (1382)
Q Consensus 176 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 255 (1382)
.+....+.|+|-..-.. +..++.......+.+.++|+.|+|||+-++.+++..- ..|+.. .+..+....+
T Consensus 66 ~~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~----~~p~~~a~~~ 135 (297)
T COG2842 66 ALEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIE----ADPSYTALVL 135 (297)
T ss_pred ccccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-----cceeec----CChhhHHHHH
Confidence 34445567887655322 3333333333345889999999999999999988542 334431 4444444555
Q ss_pred HHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh
Q 000630 256 QNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP 306 (1382)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~ 306 (1382)
...+...... .......+....+...+++..-+++.|+.+..
T Consensus 136 i~~i~~~~~~---------~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 136 ILIICAAAFG---------ATDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred HHHHHHHHhc---------ccchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 5555444432 22334556667777777888889999988763
No 329
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.51 Score=49.56 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHHhcC-----------CCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 183 YNVGLDFRIKEVIRLLDV-----------KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
..=|.|..++++.+.+-. +-....-|..+|++|.|||-+|++.+.+-...|
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 344556666655554321 112345678999999999999999987655443
No 330
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.52 E-value=0.07 Score=53.99 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEcCCCChHHHHHHHHHHHH
Q 000630 210 LFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 210 I~G~gGiGKTtLA~~~~~~~ 229 (1382)
|.|++|.||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 331
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.51 E-value=0.22 Score=54.66 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..|-++|..+-..-.++.|.|.+|.|||++|.+++.....+-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3444556544445679999999999999999998776444456677775
No 332
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.22 Score=56.50 Aligned_cols=100 Identities=23% Similarity=0.231 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCC
Q 000630 191 IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVP 270 (1382)
Q Consensus 191 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 270 (1382)
+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.++. ...++.++. --+..+....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-------GEES~~Qik-lRA~RL~~~~--- 146 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-------GEESLQQIK-LRADRLGLPT--- 146 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-------CCcCHHHHH-HHHHHhCCCc---
Confidence 4556666654323446899999999999999999999998766 566664 233333332 1223333110
Q ss_pred CCCCCcccchhhcHHHHHHHHc-CCcEEEEEcCCCC
Q 000630 271 TENVPTENVVTANIAEIKNVVR-ERKVFVVLDDVDD 305 (1382)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVLDdv~~ 305 (1382)
..-.--.+...+.+.+.+. .++-++|+|-+..
T Consensus 147 ---~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 147 ---NNLYLLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred ---cceEEehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 0000011222334444443 5788999998743
No 333
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.50 E-value=0.14 Score=56.83 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKV 269 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 269 (1382)
.++.+.+++.. ...+|.|.|..|.||||++.++...+...-..++.+.+-.+. .+.. + .++..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~-----~~~~----~-~q~~v---- 130 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY-----QIPG----I-NQVQV---- 130 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee-----cCCC----c-eEEEe----
Confidence 34455555532 235899999999999999999888764322223333322111 0000 0 00000
Q ss_pred CCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHh
Q 000630 270 PTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPSQLNALC 313 (1382)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~ 313 (1382)
... ......+.++..++..+=.|+++++.+.+....++
T Consensus 131 ----~~~--~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 131 ----NEK--AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred ----CCc--CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 000 01134566777888888899999999987655443
No 334
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.46 E-value=0.033 Score=59.15 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=23.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
||+|.|.+|.||||+|++++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988643
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.46 E-value=0.94 Score=51.97 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999987654433344443
No 336
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.45 E-value=0.034 Score=47.41 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 337
>PRK00625 shikimate kinase; Provisional
Probab=94.45 E-value=0.03 Score=57.63 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.|.++||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 338
>PRK03839 putative kinase; Provisional
Probab=94.45 E-value=0.031 Score=58.58 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 339
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.41 E-value=0.093 Score=63.29 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=49.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhh
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTA 282 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 282 (1382)
..-++..++|++|+||||||.-++++-. |. ++=+. ++.......+-+.+...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN-----ASDeRt~~~v~~kI~~avq~~s--------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN-----ASDERTAPMVKEKIENAVQNHS--------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec-----ccccccHHHHHHHHHHHHhhcc---------------
Confidence 3568999999999999999999998642 22 11121 5666666666666655544211
Q ss_pred cHHHHHHHH--cCCcEEEEEcCCCCh
Q 000630 283 NIAEIKNVV--RERKVFVVLDDVDDP 306 (1382)
Q Consensus 283 ~~~~l~~~l--~~~r~LlVLDdv~~~ 306 (1382)
.+ .+++.-||+|.++..
T Consensus 381 -------~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 -------VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred -------ccccCCCcceEEEecccCC
Confidence 11 257888999999763
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.40 E-value=0.077 Score=61.70 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
...|.|.|+.|.||||+++.+...+.......++.. .++ +....... ..+... .....+.....
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti------Edp--~E~~~~~~-~~~i~q-------~evg~~~~~~~ 185 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI------EDP--IEYVHRNK-RSLINQ-------REVGLDTLSFA 185 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE------cCC--hhhhccCc-cceEEc-------cccCCCCcCHH
Confidence 368999999999999999999887765544444442 111 11000000 000000 00011122345
Q ss_pred HHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeCC
Q 000630 285 AEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRD 331 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR~ 331 (1382)
+.++..++..+=.|++|.+.+.+........ ...|..|+.|.-.
T Consensus 186 ~~l~~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha 229 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHT 229 (343)
T ss_pred HHHHHhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcC
Confidence 6677788888999999999987765543322 1345444444443
No 341
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.36 E-value=0.079 Score=62.58 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 56999999999998888643 25679999999999999999986643
No 342
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.29 E-value=0.19 Score=56.67 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=24.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
..++++++|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35699999999999999999999876543
No 343
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.27 Score=57.07 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=32.4
Q ss_pred cccchhHH---HHHHHHHhcCCC-------CCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 183 YNVGLDFR---IKEVIRLLDVKS-------SNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 183 ~~vGr~~~---l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..-|.|+. +++|.+.|.... .=.+-|.++|++|.|||-||++++-+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34577655 555555664311 124568899999999999999998754
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.24 E-value=0.27 Score=48.98 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=31.0
Q ss_pred HHHHHHHHhcceEEEEecCCcccChhhHHHHHHHHHc---CCeEEEEEecCC
Q 000630 60 PSLIDAIYDSAASIIILSPNYGSSRWCLEELAKICEL---NRLILPVFYKVD 108 (1382)
Q Consensus 60 ~~~~~~i~~s~~~i~v~s~~y~~s~w~~~e~~~~~~~---~~~~ipv~~~v~ 108 (1382)
.++.++|++++.+++|+.-....+.+. .++...+.. ...++.|+=|.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechh
Confidence 367899999999999998765444442 244444432 356666655554
No 345
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=0.0065 Score=64.08 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=62.1
Q ss_pred CCccEEEecCccccccCccccCCCCCcEEEcCCCCCCCCCChhhhhhcccccccccccccCccCCh--hccCCCCCCeEE
Q 000630 765 RSLKELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPD--SVGHMGNLEKLS 842 (1382)
Q Consensus 765 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~ 842 (1382)
.+.+.|+..|+.+..+. -+.+++.|+.|.|+-|++..--| +. .|++|++|+|..|.|..+.+ .+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44555666666665442 23456667777777666433322 11 27888899998888886653 467889999999
Q ss_pred ecccCCCCcCCC-----CcCccccceeee
Q 000630 843 LIGCGSITTIPD-----SIGHLKSLIEFL 866 (1382)
Q Consensus 843 L~~~~~~~~~~~-----~l~~l~~L~~L~ 866 (1382)
|..|...+.-+. .+.-+++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 988877665543 234455555554
No 346
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.17 E-value=1.5 Score=49.39 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc---------c-cceeeeeccccccCCCCHHHHHHHHH
Q 000630 191 IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF---------E-HRSFISNVRETSGQNDGLVSLQNKLI 260 (1382)
Q Consensus 191 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------~-~~~~~~~~~~~~~~~~~~~~l~~~ll 260 (1382)
++.+.+.+..+ .-..+..++|..|.||+++|.++++.+-... + ...++. . ......+.++. ++.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~---~g~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I---FDKDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c---CCCcCCHHHHH-HHH
Confidence 44555555432 2346777999999999999999999862211 1 111111 0 00111121111 122
Q ss_pred HHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH--HHhhHhcCCCcCCCCCeEEEEeCC-CCcccc
Q 000630 261 FDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS--QLNALCGDKEWFSEGSRIIITTRD-RGALPE 337 (1382)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~--~l~~l~~~~~~~~~gs~IliTTR~-~~~~~~ 337 (1382)
..+... + .-.+++-++|+|+++... ...+++......++.+.+|++|.+ ..+.+.
T Consensus 79 ~~~~~~--------~--------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~T 136 (299)
T PRK07132 79 NKLYFS--------S--------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPT 136 (299)
T ss_pred HHhccC--------C--------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHH
Confidence 221100 0 001466678889987653 355566666655777787776644 344432
Q ss_pred -CCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHHHHHH
Q 000630 338 -HYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVF 393 (1382)
Q Consensus 338 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 393 (1382)
...+..+++.++++++..+.+... + .++ +.+..++...+|.--|+..+
T Consensus 137 I~SRc~~~~f~~l~~~~l~~~l~~~--~---~~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 137 IVSRCQVFNVKEPDQQKILAKLLSK--N---KEK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHhCeEEEECCCCCHHHHHHHHHHc--C---CCh---hHHHHHHHHcCCHHHHHHHH
Confidence 344679999999999999888743 1 111 34566666777633565554
No 347
>PRK04040 adenylate kinase; Provisional
Probab=94.14 E-value=0.045 Score=57.38 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=23.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.+|+|+|++|+||||+++.+++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 348
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.13 E-value=0.035 Score=52.25 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=22.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
|-|+|.+|+|||++|..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 45899999999999999998776544
No 349
>PTZ00301 uridine kinase; Provisional
Probab=94.13 E-value=0.048 Score=58.05 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=25.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875544
No 350
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.07 E-value=0.096 Score=58.09 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.|.++|++|.||||+|+++++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 351
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.03 E-value=0.081 Score=59.80 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=34.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
.+++.+.|.||+||||+|.+.+-..........-+. ....+++.++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS-----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS-----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE-----eCCCCchHhhhc
Confidence 578999999999999999999888777665444443 344455554443
No 352
>PRK08233 hypothetical protein; Provisional
Probab=94.03 E-value=0.042 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 353
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.96 E-value=0.7 Score=55.39 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHhcCCC----CCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 186 GLDFRIKEVIRLLDVKS----SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 186 Gr~~~l~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
++...+..|.+.+.... ....+|+|+|.+|+||||++.+++..+..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34444555555443211 235799999999999999999998876543
No 354
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.96 E-value=0.25 Score=59.40 Aligned_cols=50 Identities=30% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 191 IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 191 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
+.++-+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666544344578999999999999999999987764434456664
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.93 E-value=0.055 Score=58.29 Aligned_cols=27 Identities=37% Similarity=0.728 Sum_probs=24.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 356
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.26 Score=59.79 Aligned_cols=151 Identities=24% Similarity=0.241 Sum_probs=81.9
Q ss_pred CcccchhHHHHHHHHHhcC--CC--------CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 182 AYNVGLDFRIKEVIRLLDV--KS--------SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
....|.|+..+++.+.++. ++ .=.+-|.++|++|.|||.||++++-...--| +. .|...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~-----iSGS~- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-----ISGSD- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee-----ccchh-
Confidence 4578888877777665542 11 1245688999999999999999998643222 11 11110
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcEEEEEcCCCCh----------------HHHhhHhcC
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKVFVVLDDVDDP----------------SQLNALCGD 315 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~----------------~~l~~l~~~ 315 (1382)
. +...- +. ......+...+..+.-++.+++|.++.. ..+..++..
T Consensus 219 F-------VemfV-Gv-----------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvE 279 (596)
T COG0465 219 F-------VEMFV-GV-----------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 279 (596)
T ss_pred h-------hhhhc-CC-----------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhh
Confidence 0 00000 00 0001112223333456789999877542 235666666
Q ss_pred CCcCCC--CCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhh
Q 000630 316 KEWFSE--GSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHA 362 (1382)
Q Consensus 316 ~~~~~~--gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 362 (1382)
.+.++. |--|+..|-.++++. ...-++.+.++..+-..-.+.++-|+
T Consensus 280 mDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 280 MDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred hccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 665553 323333343344432 22345677777777777777777565
No 357
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.91 E-value=1.5 Score=50.59 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCC-------CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 191 IKEVIRLLDVKS-------SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 191 l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
.++|.++|..+. ....+|-.+|.-|.||||-|.++++.++. +...+-+
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvll 133 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLL 133 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEE
Confidence 355666665311 23678999999999999999999998776 3444443
No 358
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.045 Score=56.39 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 359
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.90 E-value=0.26 Score=52.32 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=39.8
Q ss_pred hhcHHHHHHHHcCCcEEEEEcCC----C--ChHHHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEcC
Q 000630 281 TANIAEIKNVVRERKVFVVLDDV----D--DPSQLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEVQ 347 (1382)
Q Consensus 281 ~~~~~~l~~~l~~~r~LlVLDdv----~--~~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l~ 347 (1382)
+++.-.+.+.+-..+-+|+.|+= | +.+.+-.++.... ...|..||+.|-|..++.. .++.+.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 34445677778888888889963 2 2233444333221 1347789999999988775 34555554
No 360
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.21 Score=54.24 Aligned_cols=30 Identities=40% Similarity=0.413 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
....++|||++|.|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 456899999999999999999999875444
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.90 E-value=0.11 Score=55.59 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 190 RIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 190 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
+..++.+.+........+|||.|.||+|||||.-++...+..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3344555554444567899999999999999999999987654
No 362
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.89 E-value=0.084 Score=51.20 Aligned_cols=27 Identities=37% Similarity=0.258 Sum_probs=23.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.-.+|.+.|.-|.||||+++.+++.+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 345899999999999999999998653
No 363
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.87 E-value=0.23 Score=57.09 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc------cccceeeeeccccccCCCCHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ------FEHRSFISNVRETSGQNDGLVSLQ 256 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l~ 256 (1382)
..+.++|..+-..-.++-|+|.+|+||||+|.+++...... -..++|++ ....+...++.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~-----te~~f~~~rl~ 147 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID-----TENTFRPERIM 147 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE-----CCCCCCHHHHH
Confidence 33445565433456788999999999999999998764321 12577776 44444555543
No 364
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.82 E-value=0.12 Score=55.86 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEEEcC----CCC--hHHHhhHhcCCCcCCCCCeEEEEeCCCCccc
Q 000630 284 IAEIKNVVRERKVFVVLDD----VDD--PSQLNALCGDKEWFSEGSRIIITTRDRGALP 336 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDd----v~~--~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~ 336 (1382)
...+.+.|..++=|+|||. ||. ...+-.++..+. ..|..||+.|-|-....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhH
Confidence 3456778888999999996 333 334444444332 34889999998875443
No 365
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.82 E-value=0.19 Score=57.58 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh------cccccceeeeeccccccCCCCHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV------DQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
..|-++|..+-..-.++-|+|.+|+|||+|+.+++-... ..-..++|++ ....+...++.+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId-----TE~tF~peRl~~ 179 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID-----TEGTFRPDRIVP 179 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE-----cCCCCCHHHHHH
Confidence 334455654434567888999999999999998874321 1123567776 455556666544
No 366
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.82 E-value=0.38 Score=54.18 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeeeeccccccCCCCHHHHHHHHHHHh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFISNVRETSGQNDGLVSLQNKLIFDL 263 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 263 (1382)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+. . .....++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-----~--E~~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-----L--EEPVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-----c--ccCHHHHHHHHHHHH
Confidence 34588899999999999999998876544 34556664 2 223455555555443
No 367
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.73 E-value=0.13 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+++.|++|.||||+|+.+++.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998775
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.73 E-value=0.023 Score=35.86 Aligned_cols=19 Identities=47% Similarity=0.781 Sum_probs=11.6
Q ss_pred CCEeeccCCCCCcCchhcc
Q 000630 1086 LEILNLGNNNFCNLPSSLR 1104 (1382)
Q Consensus 1086 L~~L~Ls~N~l~~lp~~l~ 1104 (1382)
|++|||++|+|+.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666665544
No 369
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.72 E-value=0.056 Score=57.13 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
++++|+|.|++|+||||+|+.++.++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999865
No 370
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=93.69 E-value=0.026 Score=65.75 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=59.3
Q ss_pred CCceeeeeEEEE-EEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcchhhccc
Q 000630 1228 RNHKIEGVIIGV-VVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRPLVSMLK 1306 (1382)
Q Consensus 1228 ~~~~~~g~~~~~-vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~L~ 1306 (1382)
.+.++.|...+. -||+|.+...+ +. ...|..|++.+.+.+|.++|+|+|.|.....=.+|.|||++|+|.+.|.
T Consensus 219 FG~V~~g~~~~~~~vavk~ik~~~----m~-~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr 293 (468)
T KOG0197|consen 219 FGEVWLGKWNGSTKVAVKTIKEGS----MS-PEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLR 293 (468)
T ss_pred cceEEEEEEcCCCcccceEEeccc----cC-hhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhh
Confidence 356777777665 47888774422 21 2578899999999999999999999997666788999999999999987
Q ss_pred C
Q 000630 1307 D 1307 (1382)
Q Consensus 1307 ~ 1307 (1382)
.
T Consensus 294 ~ 294 (468)
T KOG0197|consen 294 T 294 (468)
T ss_pred h
Confidence 5
No 371
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.69 E-value=0.17 Score=52.85 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH------HHHHHhhCCCCCCCCCCCccc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN------KLIFDLSSGNKVPTENVPTEN 278 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~------~ll~~l~~~~~~~~~~~~~~~ 278 (1382)
-.+++|.|..|.|||||++.++-... ...+.+++.... ... ........ +++..+...... ........
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~--~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~-~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD--LAS-LSPKELARKIAYVPQALELLGLAHLA-DRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE--CCc-CCHHHHHHHHhHHHHHHHHcCCHhHh-cCCcccCC
Confidence 45899999999999999999987543 234445553211 111 11111111 122222211000 00001111
Q ss_pred chhhcHHHHHHHHcCCcEEEEEcCCCC---h---HHHhhHhcCCCcCCC-CCeEEEEeCCCCcc
Q 000630 279 VVTANIAEIKNVVRERKVFVVLDDVDD---P---SQLNALCGDKEWFSE-GSRIIITTRDRGAL 335 (1382)
Q Consensus 279 ~~~~~~~~l~~~l~~~r~LlVLDdv~~---~---~~l~~l~~~~~~~~~-gs~IliTTR~~~~~ 335 (1382)
.-+...-.+.+.+...+-++++|+-.. . +.+..++.... .. +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHHH
Confidence 112223345556667788889998632 2 22333322211 22 67888898876543
No 372
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.24 Score=52.03 Aligned_cols=34 Identities=35% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeee
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISN 241 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 241 (1382)
+...-|.++|++|.|||-+|++|+++-. .+|+..
T Consensus 209 dppkgvllygppgtgktl~aravanrtd-----acfirv 242 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRV 242 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEee
Confidence 3456788999999999999999999753 455553
No 373
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.65 E-value=0.58 Score=56.45 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh-cccccceeeeeccccccCCCCHHHHHHHHHHHh
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV-DQFEHRSFISNVRETSGQNDGLVSLQNKLIFDL 263 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 263 (1382)
.|...-+..|-+++. +-..-.++.|.|.+|+|||++|..++.... .+-..++|++ -.....++...++...
T Consensus 175 ~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 175 TGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-------LEMSAEQLGERLLASK 246 (421)
T ss_pred cceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHHHH
Confidence 344444455555543 223445888999999999999999997654 3223344543 2345666666666554
Q ss_pred h
Q 000630 264 S 264 (1382)
Q Consensus 264 ~ 264 (1382)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 374
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.64 E-value=0.096 Score=57.20 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=26.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
....+|+|.|..|.|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 467899999999999999999999877654
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.25 Score=57.17 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=24.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
-.+++++|+.|+||||++.+++.+...++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46999999999999999999998765443
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.64 E-value=0.24 Score=49.84 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999765
No 377
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.63 E-value=0.37 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+..|+|+||+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999988654
No 378
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.58 Score=50.36 Aligned_cols=51 Identities=25% Similarity=0.187 Sum_probs=39.2
Q ss_pred cCcccchhHHHHHHHHHh----------cCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 181 AAYNVGLDFRIKEVIRLL----------DVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 181 ~~~~vGr~~~l~~l~~~L----------~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
-...-|.|...+.|.+.. .......+-|.++|++|.||+.||++|+.....
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 356788888888887753 223334678999999999999999999986543
No 379
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.62 E-value=0.19 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
-.+++|+|..|.|||||++.++-..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998754
No 380
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=93.61 E-value=0.033 Score=58.41 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcchhhcccCCcEEEEEEe
Q 000630 1259 VDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRPLVSMLKDGYTIQVTTR 1316 (1382)
Q Consensus 1259 ~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~L~~~~~~~v~~~ 1316 (1382)
..|+.|+-.+.-..|+|++++.|-|..+-+-+.|..|||+|||...||++..|.|...
T Consensus 232 rdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~s 289 (448)
T KOG0195|consen 232 RDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHS 289 (448)
T ss_pred chhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecc
Confidence 6799999999999999999999999999999999999999999999999988776553
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.58 E-value=0.29 Score=58.91 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 191 IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 191 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
+.++-+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45566666544445678999999999999999999887655434456664
No 382
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.58 E-value=0.071 Score=57.25 Aligned_cols=28 Identities=36% Similarity=0.637 Sum_probs=24.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
....+|+|+|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998664
No 383
>PRK13947 shikimate kinase; Provisional
Probab=93.56 E-value=0.054 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
-|.|+||+|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999998743
No 384
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.56 E-value=0.06 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
...|.|+|++|.||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999873
No 385
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.56 E-value=0.12 Score=54.04 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.|+|+|-||+||||+|..++.++..+-...+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999997777655533344444
No 386
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.50 E-value=0.24 Score=51.73 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
-.+++|.|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998754
No 387
>PRK15453 phosphoribulokinase; Provisional
Probab=93.50 E-value=0.27 Score=53.88 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
....+|+|.|-+|.||||+|+++++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999987653
No 388
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.47 E-value=0.098 Score=60.67 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhccccc---ceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEH---RSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVT 281 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 281 (1382)
-..|.|+|+.|.||||+++.+...+....+. ++.+.+-.+ ......... ...+. . .....+..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~-~~~v~-Q-------~~v~~~~~ 199 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETI-SASVC-Q-------SEIPRHLN 199 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----Eeccccccc-cceee-e-------eecccccc
Confidence 4689999999999999999999877544332 222221111 111110000 00000 0 00011122
Q ss_pred hcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeC
Q 000630 282 ANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 282 ~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR 330 (1382)
.....++..|+..+-.+++..+.+.+..+..+... ..| +.++||=
T Consensus 200 ~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa---~tG-h~v~tTl 244 (358)
T TIGR02524 200 NFAAGVRNALRRKPHAILVGEARDAETISAALEAA---LTG-HPVYTTL 244 (358)
T ss_pred CHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHH---HcC-CcEEEee
Confidence 34566777888899999999999887765433221 234 3456653
No 389
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=1.8 Score=52.55 Aligned_cols=173 Identities=21% Similarity=0.180 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHHhcCCCC-----------CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCC
Q 000630 183 YNVGLDFRIKEVIRLLDVKSS-----------NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDG 251 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~~~-----------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 251 (1382)
.+=|+.+..+.+++.+.-... ...-|.++|++|.|||-||.+++....-+ |+. +. +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-----vK---G 734 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-----VK---G 734 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-----ec---C
Confidence 345666666666666543221 12347899999999999999998864322 343 11 1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHH-HcCCcEEEEEcCCCCh-------------HHHhhHhcCCC
Q 000630 252 LVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNV-VRERKVFVVLDDVDDP-------------SQLNALCGDKE 317 (1382)
Q Consensus 252 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVLDdv~~~-------------~~l~~l~~~~~ 317 (1382)
. +++.+. .+. .++..+.+-.+ -.-+++.+.+|..+.. ..+..++...+
T Consensus 735 P-ElL~Ky----IGa-------------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelD 796 (952)
T KOG0735|consen 735 P-ELLSKY----IGA-------------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELD 796 (952)
T ss_pred H-HHHHHH----hcc-------------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhc
Confidence 2 222222 111 12233333333 3458999999998653 12445544433
Q ss_pred cC--CCCCeEEEEeCCCCccc-----cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCChHH
Q 000630 318 WF--SEGSRIIITTRDRGALP-----EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLA 389 (1382)
Q Consensus 318 ~~--~~gs~IliTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 389 (1382)
.. -.|--|+-.|..+++.. ....++.+.-+.-++.|-++.|...+-....+.+ -..+.++.+..|..-|
T Consensus 797 G~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~---vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 797 GAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTD---VDLECLAQKTDGFTGA 872 (952)
T ss_pred cccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccc---cchHHHhhhcCCCchh
Confidence 11 24555665443333322 1223444555556777777777654421111111 2234566666666543
No 390
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.45 E-value=0.24 Score=48.45 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCCCCcccEEeccCccccccccccccCCCCCceEeccCCCCCccCC-ccCCCCCCCCEEEccCCCCCCCCcccccccCCc
Q 000630 689 LSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELP-SDVSGLKHLENLILSDCSKLKELPEDICSMRSL 767 (1382)
Q Consensus 689 l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L 767 (1382)
|..+.+|+.+.+.. .....-...|.++++|+.+.+.++ +..++ ..+.++++|+.+.+.+ .....-...+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44445555555543 122222244555556666666552 22222 3345555666666653 2222222345556666
Q ss_pred cEEEecCccccccCccccCCCCCcEEEcCC
Q 000630 768 KELLVDGTAIEKLPQSIFHLVKLEKLNLGK 797 (1382)
Q Consensus 768 ~~L~L~~~~i~~lp~~l~~l~~L~~L~l~~ 797 (1382)
+.+.+..+ +..++...+.-.+|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT-T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCCCceEEEECC
Confidence 66666554 444444333323666666553
No 391
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.45 E-value=0.26 Score=56.14 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh------cccccceeeeeccccccCCCCHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV------DQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
..|-++|..+-..-+++-|+|.+|+|||||+.+++-... ..-..++|++ ....+...++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId-----tE~~f~~eRi~~ 149 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID-----TEGTFRPDRIRA 149 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE-----cCCCCCHHHHHH
Confidence 445556654444567889999999999999998774321 1123567776 445555666543
No 392
>PRK06547 hypothetical protein; Provisional
Probab=93.32 E-value=0.081 Score=54.48 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.28 E-value=0.19 Score=61.39 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 191 IKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 191 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
+.++.++|..+-..-.++.|.|.+|+||||||.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666777655455678999999999999999999997766555666664
No 394
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.26 E-value=0.26 Score=52.99 Aligned_cols=22 Identities=45% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998865
No 395
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.23 E-value=0.3 Score=52.82 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.|.|.|++|.||||+|+.++.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988753
No 396
>PRK04328 hypothetical protein; Provisional
Probab=93.18 E-value=0.34 Score=53.55 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 193 EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 193 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.|-++|..+-..-.++.|.|.+|.|||+||.+++.....+-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455433334578999999999999999998876544456677775
No 397
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.18 E-value=0.54 Score=61.65 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccc----ccceeee--eccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQF----EHRSFIS--NVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENV 279 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~--~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 279 (1382)
.-+.|+|-+|.||||....++-...... +..+|+. ............ .+..-+...+... ..
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~-----------~~ 290 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQ-----------GI 290 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhcc-----------CC
Confidence 3678999999999999999987543221 2222222 111100000111 1222222222211 11
Q ss_pred hhhcHHHHHHHHcCCcEEEEEcCCCChH---------HHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEcCCCC
Q 000630 280 VTANIAEIKNVVRERKVFVVLDDVDDPS---------QLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEVQKLD 350 (1382)
Q Consensus 280 ~~~~~~~l~~~l~~~r~LlVLDdv~~~~---------~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l~~L~ 350 (1382)
..+......+.+...++|+.+|.++... .+..+.+. -+.+++|+|+|....-........+++..+.
T Consensus 291 ~~~~~~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~ 366 (824)
T COG5635 291 AKQLIEAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFL 366 (824)
T ss_pred cchhhHHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhh
Confidence 1122222256778899999999997642 23444433 3688999999866433322223344555554
Q ss_pred HHHHHH--------HHHHhhcCCCCCC-chHH-HH---HHHHHHHhCCChHHHHHHHhhhC-----CCCCHHHHHHHHHH
Q 000630 351 SSRALQ--------LFSYHALGRENPT-DKFF-KI---SEQIVSLTGGLPLALEVFGAFLF-----DKRRITEWEDALEK 412 (1382)
Q Consensus 351 ~~ea~~--------Lf~~~a~~~~~~~-~~~~-~~---~~~i~~~~~g~PLal~~~g~~L~-----~~~~~~~w~~~l~~ 412 (1382)
+..-.+ .+....++..... ..+. .+ ..+-.+.....|++|.+.+..-. .....+-++.+++.
T Consensus 367 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 367 DLQINQFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 443322 1211222222211 0111 11 11233444888999998884433 11225567777766
Q ss_pred HHhcCCchHHHHHHhhccCC
Q 000630 413 LRKIRPNNLQEVLKISFDGL 432 (1382)
Q Consensus 413 l~~~~~~~i~~~l~~sy~~L 432 (1382)
+-...+..-...+...|+.+
T Consensus 447 ~~~~~d~~~~~~~~~~~~~~ 466 (824)
T COG5635 447 LLGREDETRGIKWSKTYAKL 466 (824)
T ss_pred HHhccchhhhhcchhhhccc
Confidence 55443322222233444444
No 398
>PRK14528 adenylate kinase; Provisional
Probab=93.17 E-value=0.34 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+.|.|.|++|.||||+|+.++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 399
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.16 E-value=0.19 Score=50.18 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
-.+++|.|..|.|||||++.++..... ..+.+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 60 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG 60 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC
Confidence 458999999999999999999875432 24445543
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.13 E-value=0.11 Score=54.07 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=24.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..+|+|.|++|.||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999998754
No 401
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.10 E-value=3.2 Score=44.69 Aligned_cols=227 Identities=17% Similarity=0.188 Sum_probs=120.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc------ccccceeeeeccc-----cccCC--
Q 000630 183 YNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD------QFEHRSFISNVRE-----TSGQN-- 249 (1382)
Q Consensus 183 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~-----~~~~~-- 249 (1382)
.+.++++.-..+..+.. ..+.+-..++|+.|.||-|.+..+.+++-+ +-+...|...... .++..
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 46777777777777665 245777889999999999999999886533 2233334331111 00000
Q ss_pred ---------CCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcHHHHHHHHcCCcE-EEEEcCCCCh--HHHhhHhcCCC
Q 000630 250 ---------DGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRERKV-FVVLDDVDDP--SQLNALCGDKE 317 (1382)
Q Consensus 250 ---------~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVLDdv~~~--~~l~~l~~~~~ 317 (1382)
..-..+.++++.++.... .+.. -..+.| ++|+-.++.. +.-.++.....
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~------------------qie~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTME 152 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQ------------------QIET-QGQRPFKVVVINEADELTRDAQHALRRTME 152 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhc------------------chhh-ccccceEEEEEechHhhhHHHHHHHHHHHH
Confidence 011112223333332210 0000 011233 5566555542 22223333333
Q ss_pred cCCCCCeEEEEeCCCC-ccc-cCCCccEEEcCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCh-HHHHHHH
Q 000630 318 WFSEGSRIIITTRDRG-ALP-EHYVNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLP-LALEVFG 394 (1382)
Q Consensus 318 ~~~~gs~IliTTR~~~-~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~g 394 (1382)
.....+|+|+.-.+.. +.. .-...-.++++..+++|....++...-...-..+ .+++.+|+++++|.- -|+-++-
T Consensus 153 kYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred HHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 3457788887554321 111 1123347899999999999999866533222222 478999999998864 3443332
Q ss_pred hhh-CCC--------CCHHHHHHHHHHHH-----hcCCchHHHHHHhhccCC
Q 000630 395 AFL-FDK--------RRITEWEDALEKLR-----KIRPNNLQEVLKISFDGL 432 (1382)
Q Consensus 395 ~~L-~~~--------~~~~~w~~~l~~l~-----~~~~~~i~~~l~~sy~~L 432 (1382)
+.- .+. -...+|+-++.+.. +..+..+..+-..-|+-|
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 211 111 12457998887753 233444555555556544
No 402
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.09 E-value=0.21 Score=50.36 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=36.0
Q ss_pred hhcHHHHHHHHcCCcEEEEEcC----CCChHHH--hhHhcCCCcCCCCCeEEEEeCCCCccccC
Q 000630 281 TANIAEIKNVVRERKVFVVLDD----VDDPSQL--NALCGDKEWFSEGSRIIITTRDRGALPEH 338 (1382)
Q Consensus 281 ~~~~~~l~~~l~~~r~LlVLDd----v~~~~~l--~~l~~~~~~~~~gs~IliTTR~~~~~~~~ 338 (1382)
+++...|.+.+-+++-+++-|. +|..-.| -.+...+ ...|..||++|-+.++...+
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhc
Confidence 3444567777788888888885 4433222 2333222 25799999999998776554
No 403
>PRK14526 adenylate kinase; Provisional
Probab=93.09 E-value=0.22 Score=53.19 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
++|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 404
>PHA02244 ATPase-like protein
Probab=93.09 E-value=0.25 Score=56.28 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=31.8
Q ss_pred cCcccchhHHHH----HHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 181 AAYNVGLDFRIK----EVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 181 ~~~~vGr~~~l~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
...++|...... .+.+++.. +. -|.|+|.+|+|||+||+++++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~---~~-PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA---NI-PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc---CC-CEEEECCCCCCHHHHHHHHHHHhC
Confidence 355777655554 34444432 22 366899999999999999999754
No 405
>PRK14529 adenylate kinase; Provisional
Probab=93.09 E-value=0.43 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
|.|.|++|+||||+|+.++.++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67899999999999999998764
No 406
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.06 E-value=0.002 Score=77.17 Aligned_cols=181 Identities=19% Similarity=0.278 Sum_probs=79.5
Q ss_pred cccccccCccCCCCCc----ccccCCCCCcEEecCCCcCcc-----CccccCCc-cccceeeccCCccCCc----ccccc
Q 000630 885 LKAFSVGRCQFLSELP----DSIEGLASLVELQLDGTSIRH-----LPDQIGGL-KMLDKLVMRNCLSLKT----LPDSI 950 (1382)
Q Consensus 885 L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~L~~n~l~~-----l~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~ 950 (1382)
+..|.|.+|.+..... ..+...+.|..|++++|.+.. +-..+... ..|+.|.+..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4444444444433211 233445555556666655541 11111221 3455566665555443 23334
Q ss_pred cCCCCCCEEEcccccCcc-----cCcc----ccCCCCCceecccccccccc----ccccccCCcc-cceeeccCccCccC
Q 000630 951 GSILTLTTLNIVNASITR-----MPES----IGILENLVILRLNECKQLEK----LPASMGKLKS-LVHLLMEETAVTEL 1016 (1382)
Q Consensus 951 ~~l~~L~~L~L~~n~i~~-----l~~~----~~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~-L~~L~L~~n~l~~i 1016 (1382)
.....++.++++.|.+.. ++.. +....++++|++++|.++.. +-..+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445566666666665531 1111 22345566666666654421 1122333333 44455555555421
Q ss_pred -----CcccCCC-CCCcEEEccCCCCcccCcchhhccccccccccccCCCCcceecccCcccC
Q 000630 1017 -----PESFGML-SSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIG 1073 (1382)
Q Consensus 1017 -----~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~ 1073 (1382)
.+.+..+ ..++.++++.|+++.. ....+...+..++.++.|.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~--------~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEK--------GVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcccc--------chHHHHHHHhhhHHHHHhhcccCccc
Confidence 2233333 4445555555544332 22223333444444555555554443
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.06 E-value=0.85 Score=57.49 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.++++++|+.|+||||.+.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998663
No 408
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.05 E-value=0.37 Score=50.02 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=55.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc---cc-cceeeeeccc-cccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ---FE-HRSFISNVRE-TSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVT 281 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~~~~~~~~~-~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 281 (1382)
-..|.|++|+|||||.+.+++-+... |. ..+-+.+-+. .+....++.+.....- .+..+..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R--------------~dVld~c 204 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRR--------------MDVLDPC 204 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhh--------------hhhcccc
Confidence 36789999999999999999865543 32 2333322111 1111111111111111 1111111
Q ss_pred hcHHHHHHHHc-CCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeEEEEeC
Q 000630 282 ANIAEIKNVVR-ERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 282 ~~~~~l~~~l~-~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~IliTTR 330 (1382)
-..+-+....+ -.+=.+|.|.+...++..++.... ..|.+++.|..
T Consensus 205 pk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 205 PKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred hHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 11122222233 367789999998877766655442 57777776654
No 409
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.02 E-value=0.2 Score=51.92 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
-.+++|.|..|.|||||++.++.-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3589999999999999999988743
No 410
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.01 E-value=0.13 Score=59.41 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHhcCC------------CCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 182 AYNVGLDFRIKEVIRLLDVK------------SSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.+++|.+...+.+.-.+... ....+-|.++|++|+|||++|++++......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46788888877775544321 1123578899999999999999999987543
No 411
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.15 Score=52.74 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=63.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCc----ccch
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPT----ENVV 280 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~----~~~~ 280 (1382)
-.+++|.|..|.|||||.+.++..... ..+.+++.... ... .........+ .-+....... .... ...-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~--~~~-~~~~~~~~~i-~~~~~~~~~~--~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD--LRD-LDLESLRKNI-AYVPQDPFLF--SGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE--hhh-cCHHHHHhhE-EEEcCCchhc--cchHHHHhhCHH
Confidence 458999999999999999999875432 34445543210 100 0011111100 0000000000 0000 0001
Q ss_pred hhcHHHHHHHHcCCcEEEEEcCCCC------hHHHhhHhcCCCcCCCCCeEEEEeCCCCccccCCCccEEEc
Q 000630 281 TANIAEIKNVVRERKVFVVLDDVDD------PSQLNALCGDKEWFSEGSRIIITTRDRGALPEHYVNQLYEV 346 (1382)
Q Consensus 281 ~~~~~~l~~~l~~~r~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~~~~~~~~~l 346 (1382)
+...-.+.+.+..++-+++||+-.. ...+..++... ..+..||++|.+...... .++.+.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1122334555666778999998643 22343443332 235678889887765543 4455544
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.00 E-value=0.1 Score=54.38 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
+|+|.|.+|.||||||+.++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 413
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.99 E-value=0.52 Score=52.05 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeeeeccccccCCCCHHHHHHHHHHH
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFISNVRETSGQNDGLVSLQNKLIFD 262 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 262 (1382)
.-.++.|.|.+|+|||++|.+++.....+ -..++|+. -......+...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s-------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS-------LEMSKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe-------CCCCHHHHHHHHHHH
Confidence 44689999999999999999998876554 34455554 233456666665544
No 414
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.98 E-value=0.51 Score=52.62 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=25.7
Q ss_pred cEEEEEcCCCC--hHHHhhHhcCCCcCCCCCeEEEEeC
Q 000630 295 KVFVVLDDVDD--PSQLNALCGDKEWFSEGSRIIITTR 330 (1382)
Q Consensus 295 r~LlVLDdv~~--~~~l~~l~~~~~~~~~gs~IliTTR 330 (1382)
+-++|+|.+.+ +.++..++.. .++||||+.|--
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd 386 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGD 386 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCC
Confidence 57899999976 5677777654 489999998865
No 415
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.98 E-value=0.2 Score=56.48 Aligned_cols=103 Identities=19% Similarity=0.110 Sum_probs=56.2
Q ss_pred HHHHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCC
Q 000630 191 IKEVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKV 269 (1382)
Q Consensus 191 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 269 (1382)
...|-..|. .+-..-+++-|+|..|+||||||..+.......-..++|++ .....+...+ +.+--++..-.
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-----~e~~ld~~~a-~~lGvdl~rll-- 109 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-----AEHALDPEYA-ESLGVDLDRLL-- 109 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-----SSS---HHHH-HHTT--GGGEE--
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-----CcccchhhHH-HhcCccccceE--
Confidence 344555664 22234679999999999999999999987766666778886 3333333222 22211111100
Q ss_pred CCCCCCcccchhhcHHHHHHHHcC-CcEEEEEcCCCC
Q 000630 270 PTENVPTENVVTANIAEIKNVVRE-RKVFVVLDDVDD 305 (1382)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~l~~-~r~LlVLDdv~~ 305 (1382)
.......++....+...++. .--++|+|.|..
T Consensus 110 ----v~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 110 ----VVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp ----EEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred ----EecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 00112234445555555554 446889999855
No 416
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.95 E-value=0.0015 Score=78.18 Aligned_cols=135 Identities=25% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCceecccccccccc----ccccccCCcccceeeccCccCc-----cCCcc----cCCCCCCcEEEccCCCCcccCcchh
Q 000630 978 NLVILRLNECKQLEK----LPASMGKLKSLVHLLMEETAVT-----ELPES----FGMLSSLMVLKMKKPSVKARNSSAR 1044 (1382)
Q Consensus 978 ~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~-----~i~~~----l~~l~~L~~L~l~~n~~~~~~~~~~ 1044 (1382)
.|+.|++..|.+... +...+.....++.++++.|.+. .++.. +....++++|++.+|.++..
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~----- 219 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS----- 219 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH-----
Confidence 344455555544332 2333444555555555555543 11222 22355666666666654321
Q ss_pred hccccccccccccCCCC-cceecccCcccCCC----CCCccCCC-CCCCEeeccCCCCC-----cCchhccCCcccceee
Q 000630 1045 EKQKLTVLPTSFCNLSS-LEELDAQGWRIGGK----IPDDFEKL-SSLEILNLGNNNFC-----NLPSSLRGLSHLKNLL 1113 (1382)
Q Consensus 1045 ~~~~~~~~p~~l~~l~~-L~~L~Ls~n~i~~~----~~~~l~~l-~~L~~L~Ls~N~l~-----~lp~~l~~l~~L~~L~ 1113 (1382)
....+...+...++ +..|++..|.+.+. ....+..+ ..++.++++.|.|+ .+...+..++.++.|.
T Consensus 220 ---~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~ 296 (478)
T KOG4308|consen 220 ---SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELS 296 (478)
T ss_pred ---HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhh
Confidence 11122223344444 55577777766533 12233344 56677777777776 2345566667777777
Q ss_pred cccccCC
Q 000630 1114 LPYCQEL 1120 (1382)
Q Consensus 1114 Ls~n~~l 1120 (1382)
+++|++.
T Consensus 297 l~~n~l~ 303 (478)
T KOG4308|consen 297 LSNNPLT 303 (478)
T ss_pred cccCccc
Confidence 7777643
No 417
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.90 E-value=0.086 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 418
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.88 E-value=0.13 Score=58.32 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=26.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
|++.+.|-||+||||+|.+.+-....+-..+.-+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6889999999999999999998776653334444
No 419
>PRK13949 shikimate kinase; Provisional
Probab=92.88 E-value=0.079 Score=54.58 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
-|.|+|++|.||||+|+.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999764
No 420
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.86 E-value=0.085 Score=51.63 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+|.|-|.+|.||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999999765
No 421
>PHA02988 hypothetical protein; Provisional
Probab=92.77 E-value=0.086 Score=59.97 Aligned_cols=81 Identities=12% Similarity=-0.025 Sum_probs=60.4
Q ss_pred cCCceeeeeEEEEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCC----CCCeeEEeecCCCcchh
Q 000630 1227 RRNHKIEGVIIGVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPET----DECQVYLCRFPGFRPLV 1302 (1382)
Q Consensus 1227 ~~~~~~~g~~~~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~----~~~~llv~~~~~~g~l~ 1302 (1382)
..+.+|+|...+..||+|...... .........|..|+..+.+..|+|+++++|++.. .....+|+||+++|+|.
T Consensus 32 ~~~~v~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~ 110 (283)
T PHA02988 32 DQNSIYKGIFNNKEVIIRTFKKFH-KGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLR 110 (283)
T ss_pred CceEEEEEEECCEEEEEEeccccc-cccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHH
Confidence 345678888888889999874321 1111113567789999999999999999998765 34567899999999999
Q ss_pred hcccCC
Q 000630 1303 SMLKDG 1308 (1382)
Q Consensus 1303 ~~L~~~ 1308 (1382)
+.++..
T Consensus 111 ~~l~~~ 116 (283)
T PHA02988 111 EVLDKE 116 (283)
T ss_pred HHHhhC
Confidence 887654
No 422
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.74 E-value=1.2 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHH
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
..+|..|+|-.|+||+||..+++-
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~ 59 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAA 59 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHh
Confidence 467889999999999999999885
No 423
>PRK13948 shikimate kinase; Provisional
Probab=92.72 E-value=0.088 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..+.|.++||.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999998764
No 424
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.70 E-value=0.12 Score=64.16 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=55.2
Q ss_pred cccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc-ccccceeeeeccccccCCCCHHHHHH
Q 000630 179 KVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD-QFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 179 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
..-+.++|.+..++.|...+... +.+.++|.+|+||||+|+.+++.+.. .++...|+.+ .......+.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n------p~~~~~~~~~ 97 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN------PEDPNNPKIR 97 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC------CCcchHHHHH
Confidence 34467899999999888877643 46889999999999999999987643 3466777764 3345566666
Q ss_pred HHHHHhh
Q 000630 258 KLIFDLS 264 (1382)
Q Consensus 258 ~ll~~l~ 264 (1382)
.+..+++
T Consensus 98 ~v~~~~G 104 (637)
T PRK13765 98 TVPAGKG 104 (637)
T ss_pred HHHHhcC
Confidence 6655443
No 425
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.68 E-value=0.19 Score=54.63 Aligned_cols=42 Identities=33% Similarity=0.535 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
.++...+.....+..+|||.|.||+|||||.-++..++..+-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 455566655566788999999999999999999998876543
No 426
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.68 E-value=0.089 Score=52.99 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhccc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQF 233 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 233 (1382)
+-|.++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765444
No 427
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.68 E-value=0.15 Score=54.16 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
...+|+|+|++|.||||||+.+...+...-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 457999999999999999999999775443334444
No 428
>PRK05439 pantothenate kinase; Provisional
Probab=92.62 E-value=0.18 Score=56.73 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 203 SNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886643
No 429
>PRK14531 adenylate kinase; Provisional
Probab=92.62 E-value=0.47 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
.|.|.|++|.||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 430
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.59 E-value=0.1 Score=53.46 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhc
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 431
>PTZ00494 tuzin-like protein; Provisional
Probab=92.58 E-value=2.6 Score=48.58 Aligned_cols=204 Identities=13% Similarity=0.127 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcc-------------cccccCCch--HHHH-HHHHHHHHHHhhcCCC------ccccCcccchhHHHHH
Q 000630 136 SQWRKAMMKVGGI-------------SGWVFNNSE--EEQL-VQLLVKRVLAELSNTP------MKVAAYNVGLDFRIKE 193 (1382)
Q Consensus 136 ~~w~~al~~~~~~-------------~g~~~~~~~--e~~~-i~~i~~~v~~~l~~~~------~~~~~~~vGr~~~l~~ 193 (1382)
..||.++.+-++. -||.++... +..+ .+..++...+..++.+ +..+..+|.|+.+-.-
T Consensus 303 Rd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~ 382 (664)
T PTZ00494 303 TNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEAL 382 (664)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHHH
Confidence 3688777765442 356665544 2222 2233333333333222 3346779999999888
Q ss_pred HHHHhcC-CCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCC
Q 000630 194 VIRLLDV-KSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTE 272 (1382)
Q Consensus 194 l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 272 (1382)
+.+.|.. +....|++++.|.-|.||++|.+....+- --..+|++ ++. . ++-++.+++.++-..
T Consensus 383 vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg----~---EDtLrsVVKALgV~n----- 446 (664)
T PTZ00494 383 VRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGG----T---EDTLRSVVRALGVSN----- 446 (664)
T ss_pred HHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecC----C---cchHHHHHHHhCCCC-----
Confidence 8888865 33468999999999999999999876643 23456665 332 2 223444555554211
Q ss_pred CCCcccc----hhhcHHHHHHHHcCCcEEEEEc--CCCCh----HHHhhHhcCCCcCCCCCeEEEEeCCCCcccc---CC
Q 000630 273 NVPTENV----VTANIAEIKNVVRERKVFVVLD--DVDDP----SQLNALCGDKEWFSEGSRIIITTRDRGALPE---HY 339 (1382)
Q Consensus 273 ~~~~~~~----~~~~~~~l~~~l~~~r~LlVLD--dv~~~----~~l~~l~~~~~~~~~gs~IliTTR~~~~~~~---~~ 339 (1382)
...=.| +.+.....+....++.-+||+- +-.+. .+.-.|.-. ..-|+|++----+.+-.. ..
T Consensus 447 -ve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplESLT~~n~~LP 521 (664)
T PTZ00494 447 -VEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMKALTPLNVSSR 521 (664)
T ss_pred -hhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHhhhchhhccCc
Confidence 000011 1222233333344555566662 11111 112222211 345677775433322111 11
Q ss_pred CccEEEcCCCCHHHHHHHHHH
Q 000630 340 VNQLYEVQKLDSSRALQLFSY 360 (1382)
Q Consensus 340 ~~~~~~l~~L~~~ea~~Lf~~ 360 (1382)
.-+.|.++.++.++|.++-..
T Consensus 522 RLDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 522 RLDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred cceeEecCCcCHHHHHHHHhc
Confidence 235799999999999988763
No 432
>PRK08356 hypothetical protein; Provisional
Probab=92.57 E-value=0.2 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVY 226 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~ 226 (1382)
..+|+|.|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999994
No 433
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.52 E-value=0.16 Score=50.33 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
++|.|+|..|+|||||++.+.+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 479999999999999999999987754
No 434
>PRK06217 hypothetical protein; Validated
Probab=92.52 E-value=0.09 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.|+|.|++|.||||+|+++++++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 435
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.47 E-value=0.18 Score=58.46 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=37.9
Q ss_pred CcccchhHHHHHHHHHhcCC--------C----CCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 182 AYNVGLDFRIKEVIRLLDVK--------S----SNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.+++|.+..++.+..++... . .....|.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 46888888888887666320 0 013568899999999999999999976543
No 436
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.098 Score=52.07 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVY 226 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~ 226 (1382)
.|+|.|.||+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999987
No 437
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.46 E-value=0.21 Score=55.38 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhccccccee
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSF 238 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 238 (1382)
++.++++. ..++.+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 93 ~~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 93 ERNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 34445553 2468999999999999999999999988766544433
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.45 E-value=0.16 Score=56.53 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999999999999999998876544445667775
No 439
>PRK08506 replicative DNA helicase; Provisional
Probab=92.45 E-value=0.72 Score=56.07 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 185 VGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
.|...-+..|-+++. +-..-.++.|-|.+|+|||++|..++.....+-..++|++ -.....++...++....
T Consensus 173 ~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 173 IGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-------CcCCHHHHHHHHHHHhc
Confidence 344444455555442 2234568889999999999999999987654323344443 34456777777766543
No 440
>PRK13946 shikimate kinase; Provisional
Probab=92.44 E-value=0.096 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.+.|++.|++|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999873
No 441
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=92.43 E-value=1.2 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
...++|+|++|+|||||...+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35688999999999999998864
No 442
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.43 E-value=0.094 Score=52.73 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|.|.|.+|.||||+|++++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 443
>PTZ00035 Rad51 protein; Provisional
Probab=92.41 E-value=0.64 Score=53.62 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..|-++|..+-..-.++.|+|.+|.|||||+..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 44556665444456789999999999999999887543
No 444
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.40 E-value=0.67 Score=53.26 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh--cccccceeee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLV--DQFEHRSFIS 240 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 240 (1382)
.++|+++|+.|+||||-..+++.++. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999976555555543 3333444553
No 445
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.36 E-value=0.095 Score=54.52 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 446
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.35 E-value=0.51 Score=55.06 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
-.++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3789999999999999999874
No 447
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.33 E-value=0.4 Score=54.20 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=40.2
Q ss_pred cccCcccchhHHHHH---HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccc
Q 000630 179 KVAAYNVGLDFRIKE---VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHR 236 (1382)
Q Consensus 179 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 236 (1382)
.....+||.....+. +.++...+.-.-+.|.+.|++|.|||+||..+++.+..+.+.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 445689998877654 3556654443568899999999999999999999998766544
No 448
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.33 E-value=0.079 Score=55.27 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCceeeeeE--EEEEEecCCCCCchh-hccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCcchhhc
Q 000630 1228 RNHKIEGVI--IGVVVSLNHQIPDEM-RYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFRPLVSM 1304 (1382)
Q Consensus 1228 ~~~~~~g~~--~~~vva~k~~~~~~~-~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g~l~~~ 1304 (1382)
.+.+|.|.- ...+||+|.+..++. ..++ ..++..|++.-+..+|+|+.+++||-.+...-.|+.||.+.|.+...
T Consensus 35 FG~vYlarekks~~IvalKVlfKsqi~~~~v--~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~ 112 (281)
T KOG0580|consen 35 FGNVYLAREKKSLFIVALKVLFKSQILKTQV--EHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKD 112 (281)
T ss_pred cccEeEeeeccCCcEEEEeeeeHHHHHHhcc--hhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHH
Confidence 356676655 566778887765432 2322 24677888888999999999999998887777888999999999998
Q ss_pred ccCC
Q 000630 1305 LKDG 1308 (1382)
Q Consensus 1305 L~~~ 1308 (1382)
|.++
T Consensus 113 L~~~ 116 (281)
T KOG0580|consen 113 LQEG 116 (281)
T ss_pred HHhc
Confidence 8844
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.33 E-value=0.086 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.|+|+|+.|+|||||++.+++.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999999865443
No 450
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.32 E-value=0.11 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 000630 208 LGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 208 v~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 451
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.31 E-value=0.38 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
+|+|.|-.|.||||+|+++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877643
No 452
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.30 E-value=0.21 Score=51.82 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceee
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFI 239 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 239 (1382)
-.+++|+|..|.|||||++.++-.... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRL 61 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEE
Confidence 358999999999999999999875432 2344444
No 453
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.28 E-value=0.17 Score=51.83 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
-.+++|.|..|.|||||.+.++-... ...+.+++.... ... .......+ ..+.. ......-+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~--~~~-~~~~~~~~---~~i~~--------~~qLS~G~~qr 90 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE--VSF-ASPRDARR---AGIAM--------VYQLSVGERQM 90 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE--CCc-CCHHHHHh---cCeEE--------EEecCHHHHHH
Confidence 35899999999999999999986442 234455554211 111 01111100 00100 00011112223
Q ss_pred HHHHHHHcCCcEEEEEcCCCC---h---HHHhhHhcCCCcCCCCCeEEEEeCCCCc
Q 000630 285 AEIKNVVRERKVFVVLDDVDD---P---SQLNALCGDKEWFSEGSRIIITTRDRGA 334 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~---~---~~l~~l~~~~~~~~~gs~IliTTR~~~~ 334 (1382)
-.+.+.+..++-++++|+-.. . ..+..++... ...|..||++|.+...
T Consensus 91 l~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~~~~tiii~sh~~~~ 144 (163)
T cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL--RAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH--HHCCCEEEEEeCCHHH
Confidence 344555666777888998643 2 2232222221 1346788889887653
No 454
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.27 E-value=0.096 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
++.+.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998863
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.25 E-value=0.17 Score=57.83 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
-..++|.|..|.||||+++++...+.... ..+.+.+..+........ . .+.... ...........
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~-------~-~l~~~~------~~~~~~~~~~~ 208 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNY-------V-HLFYSK------GGQGLAKVTPK 208 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCE-------E-EEEecC------CCCCcCccCHH
Confidence 35889999999999999999987654332 233333322211000000 0 000000 00001112234
Q ss_pred HHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCe-EEEEeCCC
Q 000630 285 AEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSR-IIITTRDR 332 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~-IliTTR~~ 332 (1382)
+.+...++..+=.+|+|.+...+.++.+... ..|.. ++.|+...
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a~----~~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRGDEAFDFIRAV----NTGHPGSITTLHAG 253 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCCHHHHHHHHHH----hcCCCeEEEEEeCC
Confidence 5566677888888999999886655443322 23333 45665544
No 456
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.25 E-value=1 Score=53.05 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
...+|+++|..|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988753
No 457
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.23 E-value=0.49 Score=55.58 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=32.1
Q ss_pred HHHHHHHHHhc-----CCCCCcEEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 189 FRIKEVIRLLD-----VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 189 ~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
+.+.++..||. ...-+.+++.|.|++|+||||-.+.++....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 44566667765 2334678999999999999999999988643
No 458
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.20 E-value=0.42 Score=59.23 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=0.0
Q ss_pred ccccCcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHH
Q 000630 178 MKVAAYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQN 257 (1382)
Q Consensus 178 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1382)
+...+..-+...-+..|-+.|..+-..-+++.|.|.+|+|||++|.+++.....++...+.+ .+-.....++.+
T Consensus 4 ~~~~~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~ly------is~ee~~~~i~~ 77 (509)
T PRK09302 4 PSASPGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVF------VTFEESPEDIIR 77 (509)
T ss_pred CccCCCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEE------EEccCCHHHHHH
Q ss_pred HHHHHhhCCCCCCCCCC---------------CcccchhhcHHHHHHHHcC-CcEEEEEcCCCC-----------hHHHh
Q 000630 258 KLIFDLSSGNKVPTENV---------------PTENVVTANIAEIKNVVRE-RKVFVVLDDVDD-----------PSQLN 310 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~l~~-~r~LlVLDdv~~-----------~~~l~ 310 (1382)
.+..-=..-........ ....+.+.....+.+.... +.-.+|+|.+.. ...+.
T Consensus 78 ~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~ 157 (509)
T PRK09302 78 NVASFGWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELR 157 (509)
T ss_pred HHHHcCCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHH
Q ss_pred hHhcCCCcCCCCCeEEEEe
Q 000630 311 ALCGDKEWFSEGSRIIITT 329 (1382)
Q Consensus 311 ~l~~~~~~~~~gs~IliTT 329 (1382)
.+..... ..|..+|+|+
T Consensus 158 ~L~~~Lk--~~g~TvLlt~ 174 (509)
T PRK09302 158 RLFAWLK--QKGVTAVITG 174 (509)
T ss_pred HHHHHHH--hCCCEEEEEE
No 459
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.17 E-value=0.33 Score=57.49 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCC---CCCCCCCcccc--
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNK---VPTENVPTENV-- 279 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~~~~~~-- 279 (1382)
-..++|.|.+|+|||||+.+++.....+...++-+.-+++ ....+.++.+.+...-..... ....+.+...-
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999998866544333333333433 223344444444332100000 00000111000
Q ss_pred hhhcHHHHHHHH---cCCcEEEEEcCCCCh
Q 000630 280 VTANIAEIKNVV---RERKVFVVLDDVDDP 306 (1382)
Q Consensus 280 ~~~~~~~l~~~l---~~~r~LlVLDdv~~~ 306 (1382)
.....-.+.+++ +++++|+++||+...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 011122344555 568999999999653
No 460
>PF13245 AAA_19: Part of AAA domain
Probab=92.15 E-value=0.28 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=17.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNK 228 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~ 228 (1382)
.+++.|.|.+|.|||+++.+....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357788999999999555554443
No 461
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.14 E-value=0.51 Score=54.24 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc------ccccceeeeeccccccCCCCHHHHHHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD------QFEHRSFISNVRETSGQNDGLVSLQNKLIFD 262 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 262 (1382)
.+|-++|..+-..-.++-|+|.+|+|||+||..++-...- .-..++|++ ....+...++. +++..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId-----tE~~f~~eRl~-qia~~ 180 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID-----TEGTFRPQRLI-QIAER 180 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE-----CCCCccHHHHH-HHHHH
Confidence 4455566544445678889999999999999988753221 112567876 45555555543 33443
No 462
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.13 E-value=0.11 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+|||.|..|.||||+|+.++..+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 463
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.12 E-value=0.51 Score=53.90 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHH
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNK 228 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 228 (1382)
.+|-++|..+-..-.++.|+|.+|+||||||..++..
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 4455666544445689999999999999999988763
No 464
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.09 E-value=0.96 Score=61.41 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=23.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..+-|.++|++|.|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999864
No 465
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.08 E-value=0.66 Score=47.25 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=61.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhh-CCCCCCCCCCCcc---cchh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLS-SGNKVPTENVPTE---NVVT 281 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~---~~~~ 281 (1382)
..|-|++-.|.||||.|..++-+...+-..++.+.-+.. ....+-....+.+...+. ...+......... ....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg--~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG--AWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC--CcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 467788889999999999999876654333322221111 111222223332211111 0110000000111 1122
Q ss_pred hcHHHHHHHHcCC-cEEEEEcCCCC--------hHHHhhHhcCCCcCCCCCeEEEEeCCC
Q 000630 282 ANIAEIKNVVRER-KVFVVLDDVDD--------PSQLNALCGDKEWFSEGSRIIITTRDR 332 (1382)
Q Consensus 282 ~~~~~l~~~l~~~-r~LlVLDdv~~--------~~~l~~l~~~~~~~~~gs~IliTTR~~ 332 (1382)
+..+..++.+... -=|+|||.+-. .+++-.++.. ..++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 3344455555544 45999999842 3444444433 25677999999976
No 466
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=92.08 E-value=0.078 Score=59.40 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=59.3
Q ss_pred ccCCceeeeeEE------EEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCc
Q 000630 1226 ERRNHKIEGVII------GVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFR 1299 (1382)
Q Consensus 1226 ~~~~~~~~g~~~------~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g 1299 (1382)
...+.++.|... ...|++|.+..... . .....|..|+..+.+.+|+|++++.|++...+...+|+||+++|
T Consensus 10 G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~-~--~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g 86 (259)
T PF07714_consen 10 GSFGKVYRAEWKQKDNDKNQPVAVKILKPSSS-E--EEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGG 86 (259)
T ss_dssp ESSEEEEEEEEESTTTSSEEEEEEEEESTTSS-H--HHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTE
T ss_pred CCCcEEEEEEEEcccCCCCEEEEEEEeccccc-c--ccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 344667777776 67788887733111 1 01467888999999999999999999999888889999999999
Q ss_pred chhhcccCC
Q 000630 1300 PLVSMLKDG 1308 (1382)
Q Consensus 1300 ~l~~~L~~~ 1308 (1382)
+|.+.|+..
T Consensus 87 ~L~~~L~~~ 95 (259)
T PF07714_consen 87 SLDDYLKSK 95 (259)
T ss_dssp BHHHHHHHT
T ss_pred ccccccccc
Confidence 999887765
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.08 E-value=0.12 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.+++|.|+.|+||||+|+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988754
No 468
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.07 E-value=0.38 Score=51.31 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVY 226 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~ 226 (1382)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 469
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.06 E-value=0.23 Score=55.52 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=36.1
Q ss_pred HhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 197 LLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 197 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.|..+-..-+++.|+|.+|.|||++|.+++.+.......++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33333345689999999999999999999998888888888886
No 470
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.99 E-value=0.15 Score=50.13 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..+|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999999888765
No 471
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.99 E-value=5 Score=47.58 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=24.5
Q ss_pred HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHH
Q 000630 194 VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNK 228 (1382)
Q Consensus 194 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 228 (1382)
+...|..+-+--..|+++|+.|+|||||.+-++-.
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd 439 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD 439 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhc
Confidence 43444333233346799999999999999988864
No 472
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.98 E-value=0.37 Score=47.07 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=1.3
Q ss_pred cccCCCCc
Q 000630 1055 SFCNLSSL 1062 (1382)
Q Consensus 1055 ~l~~l~~L 1062 (1382)
.|.++++|
T Consensus 121 ~F~~~~~l 128 (129)
T PF13306_consen 121 AFKNCTKL 128 (129)
T ss_dssp GGG-----
T ss_pred cccccccC
Confidence 34444444
No 473
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.94 E-value=0.15 Score=53.83 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..+|.|.|++|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.93 E-value=0.17 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=25.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987765
No 475
>PRK14530 adenylate kinase; Provisional
Probab=91.93 E-value=0.13 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
.|.|+|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 476
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.92 E-value=0.18 Score=53.50 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=29.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeec
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNV 242 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 242 (1382)
...+|.++||+|.||||..+.++..+..++.. .++.|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 45678899999999999999999887776553 344443
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.91 E-value=0.11 Score=55.44 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 478
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.89 E-value=0.13 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHh
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
..|+|+|+.|.||||+|+.++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998753
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.86 E-value=0.098 Score=58.91 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCC
Q 000630 189 FRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNK 268 (1382)
Q Consensus 189 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 268 (1382)
...+++.++|...-.....|.|.|..|.||||++.++...+...-...+-+.+..|.. + .. ..
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~-----l--------~~---~~- 173 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR-----L--------PG---PN- 173 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------SC---SS-
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee-----e--------cc---cc-
Confidence 3345555555432223578999999999999999999987655412223333222110 0 00 00
Q ss_pred CCCCCCCcc-cchhhcHHHHHHHHcCCcEEEEEcCCCChHHHhhHhcCCCcCCCCCeE-EEEeCC
Q 000630 269 VPTENVPTE-NVVTANIAEIKNVVRERKVFVVLDDVDDPSQLNALCGDKEWFSEGSRI-IITTRD 331 (1382)
Q Consensus 269 ~~~~~~~~~-~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~~l~~l~~~~~~~~~gs~I-liTTR~ 331 (1382)
...... .+.....+.++..|+..+=.+|++.+.+.+..+.+... ..|..+ +-|...
T Consensus 174 ---~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 174 ---QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp ---EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred ---eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 000000 12334566777888888888999999887766664322 456666 444443
No 480
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.9 Score=46.08 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHcCCcEEEEEcCCCC------hHHHhhHhcCCCcCCCCCeEEEEeCCCC
Q 000630 285 AEIKNVVRERKVFVVLDDVDD------PSQLNALCGDKEWFSEGSRIIITTRDRG 333 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~------~~~l~~l~~~~~~~~~gs~IliTTR~~~ 333 (1382)
-.+.+..-.++-|.|||.... ...+..++... ...|+.||.||-.+-
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H--~~~GGiVllttHq~l 191 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH--AAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH--hcCCCEEEEecCCcc
Confidence 345555667899999998743 23344544332 257889999998663
No 481
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.83 E-value=0.13 Score=49.40 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHH
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
+-|.|.|.||+||||+|.+++...
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999999653
No 482
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.82 E-value=0.39 Score=60.56 Aligned_cols=49 Identities=20% Similarity=0.120 Sum_probs=36.2
Q ss_pred HHHHHHhc-CCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 192 KEVIRLLD-VKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 192 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
..|-.+|. .+-..-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 45556665 33345688999999999999999988776555556677876
No 483
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.82 E-value=1.1 Score=52.16 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTAN 283 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 283 (1382)
..+-+-|||..|.|||.|+-.+|+.+..+-..++.+. .=+.++.+.+- ++. .....
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~-~~~--------------~~~~~ 116 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLH-QLR--------------GQDDP 116 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHH-HHh--------------CCCcc
Confidence 4677889999999999999999996543212222111 01122222221 111 11223
Q ss_pred HHHHHHHHcCCcEEEEEcCC--CChH---HHhhHhcCCCcCCCCCeEEEEeCCC
Q 000630 284 IAEIKNVVRERKVFVVLDDV--DDPS---QLNALCGDKEWFSEGSRIIITTRDR 332 (1382)
Q Consensus 284 ~~~l~~~l~~~r~LlVLDdv--~~~~---~l~~l~~~~~~~~~gs~IliTTR~~ 332 (1382)
+..+.+.+.++..||.||.+ .|.. -+..+...+ +..| -|||+|-|.
T Consensus 117 l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~g-vvlVaTSN~ 167 (362)
T PF03969_consen 117 LPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRG-VVLVATSNR 167 (362)
T ss_pred HHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCC-CEEEecCCC
Confidence 45566667778889999986 3433 244443322 1345 466666555
No 484
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=91.82 E-value=1.5 Score=51.38 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=61.3
Q ss_pred ccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccc-eeeeeccccccCCCCHHHHHHHHHHH
Q 000630 184 NVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHR-SFISNVRETSGQNDGLVSLQNKLIFD 262 (1382)
Q Consensus 184 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~ 262 (1382)
..|...-...|-++... -..-..|.+-|-||+||||+|..++..+..+++.. .++ +-..+..++...++..
T Consensus 176 ~~Gi~tgf~~LD~~t~G-~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iF-------SLEM~~eql~~R~Ls~ 247 (435)
T COG0305 176 LIGVPTGFTDLDEITSG-FRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIF-------SLEMSEEQLVMRLLSS 247 (435)
T ss_pred CcccccCchhhHHHhcC-CccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEE-------EccCCHHHHHHHhhcc
Confidence 34444444444444322 22345788999999999999999999877666554 333 3344556666666655
Q ss_pred hhCCCCCCCCC-CCcccchhhcHHHHHHHHcCCcEEEEEcCCCChH
Q 000630 263 LSSGNKVPTEN-VPTENVVTANIAEIKNVVRERKVFVVLDDVDDPS 307 (1382)
Q Consensus 263 l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~r~LlVLDdv~~~~ 307 (1382)
........... .....+++ .+......+.+.+ |.+||.....
T Consensus 248 ~s~v~~~kirtg~l~~~d~~-~l~~a~~~l~~~~--i~IdD~~~~s 290 (435)
T COG0305 248 ESGIESSKLRTGRLSDDEWE-RLIKAASELSEAP--IFIDDTPGLT 290 (435)
T ss_pred ccccchhccccccccHHHHH-HHHHHHHHHhhCC--eeecCCCcCC
Confidence 44322111100 11111222 2333344456666 7778887643
No 485
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.79 E-value=0.31 Score=54.44 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=38.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhccc-ccceeeeeccccccCCCCHHHHHHHHHHHhhC
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQF-EHRSFISNVRETSGQNDGLVSLQNKLIFDLSS 265 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 265 (1382)
-.++.|-|.+|+|||++|..++..+..+- ..+.|++ -..+..++...++.....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S-------lEm~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS-------LEMSEEELAARLLARLSG 73 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE-------SSS-HHHHHHHHHHHHHT
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc-------CCCCHHHHHHHHHHHhhc
Confidence 45888999999999999999999876543 4555553 344566777777776653
No 486
>PLN02459 probable adenylate kinase
Probab=91.79 E-value=0.36 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 000630 207 VLGLFGLGGIGKTTLAKAVYNKLV 230 (1382)
Q Consensus 207 vv~I~G~gGiGKTtLA~~~~~~~~ 230 (1382)
.+.|.|++|.||||+|+.+++++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 366789999999999999998753
No 487
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.74 E-value=0.26 Score=61.01 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=38.9
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
+..+.|.+-.+.|.+..........+|.|+|++|.||||+|++++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34566777777777776655455668999999999999999999998764
No 488
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.73 E-value=0.34 Score=53.67 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=43.0
Q ss_pred cccCcccchhHHHHH---HHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccc
Q 000630 179 KVAAYNVGLDFRIKE---VIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFE 234 (1382)
Q Consensus 179 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 234 (1382)
...+.+||-.+..+. +.++...+.-.-+.|.++|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 446778988766543 45666655456688999999999999999999999876533
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=91.72 E-value=0.15 Score=54.28 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 490
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.71 E-value=0.074 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 206 LVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..++|.|.+|+|||+|+.++++....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 46789999999999999999987643
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.71 E-value=0.16 Score=53.33 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHHHHhcccccceeeeeccccccCCCCHHHHHHHHHHHhhCCCCCCCCCCCcccchhhcH
Q 000630 205 VLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFISNVRETSGQNDGLVSLQNKLIFDLSSGNKVPTENVPTENVVTANI 284 (1382)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 284 (1382)
-..++|.|..|.||||+++.+...+... ...+.+.+..+..... .... ++.... ............
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~-------~~~~-~~~~~~-----~~~~~~~~~~~~ 90 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH-------PNWV-RLVTRP-----GNVEGSGEVTMA 90 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC-------CCEE-EEEEec-----CCCCCCCccCHH
Confidence 3588999999999999999998866432 2233333221110000 0000 000000 000001112234
Q ss_pred HHHHHHHcCCcEEEEEcCCCChHHHhhH
Q 000630 285 AEIKNVVRERKVFVVLDDVDDPSQLNAL 312 (1382)
Q Consensus 285 ~~l~~~l~~~r~LlVLDdv~~~~~l~~l 312 (1382)
+.++..++..+=.+|++.+.+.+.++.+
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 5566667777888899999887765543
No 492
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.68 E-value=0.4 Score=61.70 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHH
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKL 229 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 229 (1382)
..++|+...++.+.+.+..-...-.-|.|+|..|+|||++|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 368999999888877665322333467799999999999999998754
No 493
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=91.63 E-value=0.13 Score=65.86 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=63.4
Q ss_pred cCCceeeeeEE-------EEEEecCCCCCchhhccCchHHHHHHHHcCCCCcccccccccCCCcCCCCCeeEEeecCCCc
Q 000630 1227 RRNHKIEGVII-------GVVVSLNHQIPDEMRYELPSIVDIQAKILTPNTTLLNTALDLQGVPETDECQVYLCRFPGFR 1299 (1382)
Q Consensus 1227 ~~~~~~~g~~~-------~~vva~k~~~~~~~~~~~~~~~~f~~e~~~l~~~~h~n~~~l~g~~~~~~~~llv~~~~~~g 1299 (1382)
..+.+|.|.+. -..||+|.+....... ...+|..|-..+++..|+|+|+|+|.|......+.+.|||+.|
T Consensus 704 ~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~---~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gG 780 (1025)
T KOG1095|consen 704 AFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQ---EVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGG 780 (1025)
T ss_pred cccceEEEEEecCCCCccceEEEEEeccccCCHH---HHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccC
Confidence 34678888772 2348999886533222 1467999999999999999999999999999999999999999
Q ss_pred chhhcccCC
Q 000630 1300 PLVSMLKDG 1308 (1382)
Q Consensus 1300 ~l~~~L~~~ 1308 (1382)
.|...|+..
T Consensus 781 DL~sflr~~ 789 (1025)
T KOG1095|consen 781 DLLSFLRES 789 (1025)
T ss_pred cHHHHHHhc
Confidence 999888765
No 494
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.59 E-value=0.37 Score=55.01 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcc
Q 000630 192 KEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQ 232 (1382)
Q Consensus 192 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 232 (1382)
.++.+.+........+|+|.|.+|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443333467899999999999999999998877654
No 495
>PLN02796 D-glycerate 3-kinase
Probab=91.55 E-value=3.1 Score=47.41 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=24.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhc
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVD 231 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 231 (1382)
..-+|+|.|..|.||||||+.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4578999999999999999999987754
No 496
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.55 E-value=0.17 Score=54.14 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEEcCCCChHHHHHHHHHHH
Q 000630 200 VKSSNVLVLGLFGLGGIGKTTLAKAVYNK 228 (1382)
Q Consensus 200 ~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 228 (1382)
.+....++|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998754
No 497
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.52 E-value=1.4 Score=49.81 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=23.4
Q ss_pred HhcCCCCCcEEEEEEcCCCChHHHHHHHHHH
Q 000630 197 LLDVKSSNVLVLGLFGLGGIGKTTLAKAVYN 227 (1382)
Q Consensus 197 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 227 (1382)
.|+.+-+-...|+|||+.|+||+||.+.+.-
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhc
Confidence 3443333345689999999999999998875
No 498
>PRK05973 replicative DNA helicase; Provisional
Probab=91.51 E-value=0.28 Score=52.99 Aligned_cols=37 Identities=19% Similarity=0.060 Sum_probs=28.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcccccceeee
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHRSFIS 240 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 240 (1382)
.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568899999999999999999886654444555654
No 499
>PRK08006 replicative DNA helicase; Provisional
Probab=91.45 E-value=1 Score=54.56 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhcc-cccceeeeeccccccCCCCHHHHHHHHHHHhh
Q 000630 204 NVLVLGLFGLGGIGKTTLAKAVYNKLVDQ-FEHRSFISNVRETSGQNDGLVSLQNKLIFDLS 264 (1382)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 264 (1382)
.-.++.|-|.+|+|||++|..++..+..+ -..++|+ +-.-...++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~f-------SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIF-------SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEE-------eccCCHHHHHHHHHHHhc
Confidence 34688899999999999999998876422 2233343 233456667777766553
No 500
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.45 E-value=0.24 Score=57.49 Aligned_cols=51 Identities=29% Similarity=0.167 Sum_probs=39.7
Q ss_pred CcccchhHHHHHHHHHhcCCCCCcEEEEEEcCCCChHHHHHHHHHHHHhcccccc
Q 000630 182 AYNVGLDFRIKEVIRLLDVKSSNVLVLGLFGLGGIGKTTLAKAVYNKLVDQFEHR 236 (1382)
Q Consensus 182 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 236 (1382)
..++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|..+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 34889888888777666543 3577999999999999999999887555433
Done!