Query 000630
Match_columns 1382
No_of_seqs 875 out of 7362
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 16:30:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000630.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_403-407//hhsearch_pdb/000630hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 468.4 35.7 589 595-1188 93-741 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 455.5 33.8 453 643-1113 98-568 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 390.1 49.2 567 629-1213 10-621 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 384.9 48.1 570 606-1187 8-622 (680)
5 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 380.6 34.8 214 628-845 16-238 (606)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 380.6 38.2 517 630-1186 19-559 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 378.1 37.9 497 607-1125 16-538 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 377.1 41.0 525 607-1166 17-562 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 374.5 40.0 502 621-1139 22-558 (844)
10 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 363.6 21.9 306 185-508 131-473 (549)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=468.39 Aligned_cols=589 Identities=19% Similarity=0.232 Sum_probs=419.4
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCC-----CCCCCEEEEECCCCCCC-CCCC--CCCCCCEEEECCCCCCCCCCCCC--
Q ss_conf 62137999983799607557997565-----66761289935899999-9998--88465526755778752112455--
Q 000630 595 TKPFESMVSLRLLQINYTKLEGSFKF-----LPHELKWLQWKDCKMKT-LPSD--FRPFQLAVLDLSESGIEYLWGSH-- 664 (1382)
Q Consensus 595 ~~~f~~~~~Lr~L~l~~~~l~~~~~~-----lp~~L~~L~~~~~~l~~-lp~~--~~~~~L~~L~L~~~~i~~l~~~~-- 664 (1382)
...|..+++|++|+++++.+.+.+.. -...|++|.+.++.+.. +|.. ..+.+|++|+++++.+.......
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 03324578899898989857870789678727889998989688267747977856388999898979835885871556
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72223446287069986887689988887665886437325421211114878785470459888833784579999997
Q 000630 665 TNKVAKNLMVLNLRGCWNLASIPDLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLE 744 (1382)
Q Consensus 665 ~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 744 (1382)
.+..+++|+.|++++|...... .+..+++|++|++++|.....+|. ++.+++|++|++++|.....+|..+..+++|+
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred HHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 6435898898989788034657-845478689898928827887711-12699999897948858781657774488889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 9973389999988300016587519992483463-258111399-99959972899899988714653101232100334
Q 000630 745 NLILSDCSKLKELPEDICSMRSLKELLVDGTAIE-KLPQSIFHL-VKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNY 822 (1382)
Q Consensus 745 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l-~~L~~L~L~~~~~~~~l~~~~~~~l~~L~~L~l~~ 822 (1382)
+|++++|...+.+|.. .+++|++|++++|.+. .+|..+... ++|+.|++++|...+.+|..+.. +++|+.|++++
T Consensus 251 ~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~ 327 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSS 327 (768)
T ss_dssp EEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCS
T ss_pred EEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCC
T ss_conf 8989888665716724--36878989791785577258888844686889989689677842367755-87766778978
Q ss_pred CCCC-CCCHH-CCCCCCCCEEEECCCCCCCCCCCCCCCCC-CCEEEECCCCCCC-CCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 4674-47700-01899998699316689986778757633-3303131477876-65766688--745530135674477
Q 000630 823 SAVE-ELPDS-VGHMGNLEKLSLIGCGSITTIPDSIGHLK-SLIEFLIDGTAVK-NLPASIGS--LSYLKAFSVGRCQFL 896 (1382)
Q Consensus 823 ~~l~-~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~~~~--l~~L~~L~L~~~~~~ 896 (1382)
|.+. .+|.. +..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+. .++..+.. +++|+.|++++|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC
T ss_conf 85257379788724888878848478437623098986322771998627874787676665332477618989778465
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCC
Q ss_conf 777100038998859956999675-68512278656656643477467745622127878889980165476-4684323
Q 000630 897 SELPDSIEGLASLVELQLDGTSIR-HLPDQIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASIT-RMPESIG 974 (1382)
Q Consensus 897 ~~~~~~l~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~-~l~~~~~ 974 (1382)
+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 42487775689879898958846685467774499889898978815471897882877732999019951375887881
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHC-------
Q ss_conf 7777855423332234555200028766656662575475-67833389988869984699975468411100-------
Q 000630 975 ILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVT-ELPESFGMLSSLMVLKMKKPSVKARNSSAREK------- 1046 (1382)
Q Consensus 975 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~-~i~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------- 1046 (1382)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+.....
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHH
T ss_conf 69989989753995189687688568999989897894337488777088989989898884688279578604212232
Q ss_pred ---------------------------CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-C
Q ss_conf ---------------------------345434631368777351103372257889974488888878665588997-5
Q 000630 1047 ---------------------------QKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-N 1098 (1382)
Q Consensus 1047 ---------------------------~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~-~ 1098 (1382)
...+..+..+..++.+..+++..+.+.+.+|..+..+++|+.|||++|+++ .
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 01345421111344432222332221001355632320023211001133100462743340335665797858801555
Q ss_pred CCHHCCCCCCCCEEECCCCCCCCCCCCC---CCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 8200239844553102566578878999---9997589768865665-63377888989889421788987887655743
Q 000630 1099 LPSSLRGLSHLKNLLLPYCQELKSLPPL---PSSLEEVNVANCFALE-SICDLSNLKSLKRLNLTNCEKLVDISGLESLK 1174 (1382)
Q Consensus 1099 lp~~l~~l~~L~~L~L~~c~~l~~ip~~---~~sL~~L~l~~c~~l~-~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~~ 1174 (1382)
+|..+..+++|+.|+|++|...+.+|.. .++|+.|++++|.-.. .+..+..++.|+.|++++|+..+.+|....+.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHC
T ss_conf 87788414157878486880388789678477789989897880238688677578878978796881556089960102
Q ss_pred CCCEEECCCCCCCC
Q ss_conf 34601033787772
Q 000630 1175 SLKWLYMSGCNACS 1188 (1382)
Q Consensus 1175 ~L~~L~l~~~~~~~ 1188 (1382)
.+....+.+|+.++
T Consensus 728 ~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 728 TFPPAKFLNNPGLC 741 (768)
T ss_dssp GSCGGGGCSCTEEE
T ss_pred CCCHHHHCCCCHHC
T ss_conf 48977756983210
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=455.51 Aligned_cols=453 Identities=21% Similarity=0.244 Sum_probs=315.4
Q ss_pred CCCCCEEEECCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCC---CCCC
Q ss_conf 84655267557787521124-55722234462870699868876899--888876658864373254212111---1487
Q 000630 643 RPFQLAVLDLSESGIEYLWG-SHTNKVAKNLMVLNLRGCWNLASIPD--LSEHQKLEKLVLERCCRLTKIHES---VGNL 716 (1382)
Q Consensus 643 ~~~~L~~L~L~~~~i~~l~~-~~~~~~~~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~---i~~l 716 (1382)
...+|++|+|+++.+..... ...+..+++|++|+|++|......|. +..+++|++|++++|......+.. +.++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
T ss_conf 57889989898985787078967872788999898968826774797785638899989897983588587155664358
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCEEEC
Q ss_conf 87854704598888337845799999979973389999988300016587519992483463-25811139999959972
Q 000630 717 SSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIE-KLPQSIFHLVKLEKLNL 795 (1382)
Q Consensus 717 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L 795 (1382)
++|++|++++|......| +..+++|++|++++|.....+|. ++.+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 988989897880346578--45478689898928827887711-126999998979488587816577744888898989
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC-CCCHHCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 8998999887146531012321003344674-477000189-99986993166899867787576333303131477876
Q 000630 796 GKCKSLKQLPNCIGTQLIALKELSFNYSAVE-ELPDSVGHM-GNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVK 873 (1382)
Q Consensus 796 ~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 873 (1382)
++|...+.+|.. .+++|+.|++++|.+. .+|..+... ++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.
T Consensus 255 s~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 255 SSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 888665716724---36878989791785577258888844686889989689677842367755877667789788525
Q ss_pred -CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCC-CCCCCCCC--CCCCCEEECCCCCCCCCCC
Q ss_conf -65766-68874553013567447777710003899-8859956999675-68512278--6566566434774677456
Q 000630 874 -NLPAS-IGSLSYLKAFSVGRCQFLSELPDSIEGLA-SLVELQLDGTSIR-HLPDQIGG--LKMLDKLVMRNCLSLKTLP 947 (1382)
Q Consensus 874 -~l~~~-~~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~L~~~~i~-~l~~~~~~--l~~L~~L~l~~~~~~~~~~ 947 (1382)
.+|.. +..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+. .++..+.. +++|+.|++++|...+.+|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 73797887248888788484784376230989863227719986278747876766653324776189897784654248
Q ss_pred CCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCC
Q ss_conf 22127878889980165476-46843237777855423332234555200028766656662575475-67833389988
Q 000630 948 DSIGSILTLTTLNIVNASIT-RMPESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETAVT-ELPESFGMLSS 1025 (1382)
Q Consensus 948 ~~l~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~-~i~~~~~~l~~ 1025 (1382)
..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+..+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC
T ss_conf 77756898798989588466854677744998898989788154718978828777329990199513758878816998
Q ss_pred CCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHCC
Q ss_conf 869984699975468411100345434631368777351103372257889974488888878665588997-5820023
Q 000630 1026 LMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSLR 1104 (1382)
Q Consensus 1026 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~-~lp~~l~ 1104 (1382)
|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.++ .+|..+.
T Consensus 492 L~~L~L~~N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 492 LNWISLSNNRLTG------------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CCEEECCSSCCCS------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CCEEECCCCCCCC------------CCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 9989753995189------------6876885689999898978943374887770889899898988846882795786
Q ss_pred CCCCCCEEE
Q ss_conf 984455310
Q 000630 1105 GLSHLKNLL 1113 (1382)
Q Consensus 1105 ~l~~L~~L~ 1113 (1382)
.+..+..+.
T Consensus 560 ~~~~~~~~~ 568 (768)
T 3rgz_A 560 KQSGKIAAN 568 (768)
T ss_dssp TTTTCBCCS
T ss_pred CCCCHHHHH
T ss_conf 042122320
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=390.09 Aligned_cols=567 Identities=21% Similarity=0.181 Sum_probs=314.5
Q ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCC
Q ss_conf 935899999999888465526755778752112455722234462870699868876899-8888766588643732542
Q 000630 629 QWKDCKMKTLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIPD-LSEHQKLEKLVLERCCRLT 707 (1382)
Q Consensus 629 ~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~ 707 (1382)
.+.+..+..+|..+ +.++++|+++++.+..+.. ..+..+++|++|++++|......|. +..+++|++|++++|....
T Consensus 10 ~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp ECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 87779805264124-8887688898997787597-887178767588788996485697787406676888899985675
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---C
Q ss_conf 1211114878785470459888833784579999997997338999998830001658751999248346325811---1
Q 000630 708 KIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKLPQS---I 784 (1382)
Q Consensus 708 ~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~lp~~---i 784 (1382)
..+..++.+++|++|++++|......|..+.++++|++|++++|......+..+..+++|++|++++|.+..++.. .
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 68545303888898989899668539667415678888989899524667211124556777974588436529788624
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC-----CCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 399999599728998999887146531012321003344674-----477000189999869931668998677875763
Q 000630 785 FHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVE-----ELPDSVGHMGNLEKLSLIGCGSITTIPDSIGHL 859 (1382)
Q Consensus 785 ~~l~~L~~L~L~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 859 (1382)
..+++|+.|++++|......+..+.. +.+|+.+.+..+.+. .++..+ ..++|+.|++++|.+.+..+..+..+
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 46663217988898256558155532-23445543056646805677787775-31510088745774364686675146
Q ss_pred CC--CEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC------CCCC----CC
Q ss_conf 33--303131477876657-66688745530135674477777100038998859956999675------6851----22
Q 000630 860 KS--LIEFLIDGTAVKNLP-ASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIR------HLPD----QI 926 (1382)
Q Consensus 860 ~~--L~~L~l~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~------~l~~----~~ 926 (1382)
+. |+.|++++|.+..++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|+++++... .+|. .+
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHC
T ss_conf 76778887787887675680211674105685577885676586562678885577363313213333355454386562
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCC-CCC--CCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78656656643477467745622127878889980165476--4684-323--777785542333223455520002876
Q 000630 927 GGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASIT--RMPE-SIG--ILENLVILRLNECKQLEKLPASMGKLK 1001 (1382)
Q Consensus 927 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~--~l~~-~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~ 1001 (1382)
..+++|+.|++++|...+..+..+..+++|+.|++++|.+. .++. .+. ..++|+.|++++|.+.+..+..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCC
T ss_conf 46777888879898268788557406568728988798014432353220245568676688999977767754420778
Q ss_pred CCCEEECCCCCCC-CCC-CCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCC--CCCC
Q ss_conf 6656662575475-678-33389988869984699975468411100345434631368777351103372257--8899
Q 000630 1002 SLVHLLMEETAVT-ELP-ESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIG--GKIP 1077 (1382)
Q Consensus 1002 ~L~~L~l~~n~i~-~i~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~--~~~~ 1077 (1382)
+|+.|++++|.+. .++ ..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+. +.+|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL------------TRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC------------CTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEE------------CHHHHHCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 8888867787575435755325754612784489975422------------7645500754310110146442256677
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCH-HCCCCCCCCEEECCCCCCCCC----CC-------CCCCCCCEEECCCCCCCCCCC
Q ss_conf 744888888786655889975820-023984455310256657887----89-------999997589768865665633
Q 000630 1078 DDFEKLSSLEILNLGNNNFCNLPS-SLRGLSHLKNLLLPYCQELKS----LP-------PLPSSLEEVNVANCFALESIC 1145 (1382)
Q Consensus 1078 ~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~----ip-------~~~~sL~~L~l~~c~~l~~~~ 1145 (1382)
..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+...- +| ...++|+.|++++|.......
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 64555787899989999877679446345534688858899730000000467741423379988888899997887797
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCC
Q ss_conf -77888989889421788987887-655743346010337877722232011100138840997499999
Q 000630 1146 -DLSNLKSLKRLNLTNCEKLVDIS-GLESLKSLKWLYMSGCNACSAAVKRRLSKVHFKNLRSLSMPGTEI 1213 (1382)
Q Consensus 1146 -~~~~l~~L~~L~ls~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~i 1213 (1382)
.+..+++|+.|++++|......+ .+..+++|+.+++++|... ...+..+. ..++++..+++.+|..
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~-~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFG-PAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHH-HHHTTCSEEECTTCCC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHC-CCCCCCCEEECCCCCC
T ss_conf 77346667522389999777679768378988888989999687-05966830-1146657798318970
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=384.94 Aligned_cols=570 Identities=22% Similarity=0.223 Sum_probs=431.4
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC-C-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 799607557997565667612899358999999998-8-84655267557787521124557222344628706998688
Q 000630 606 LLQINYTKLEGSFKFLPHELKWLQWKDCKMKTLPSD-F-RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNL 683 (1382)
Q Consensus 606 ~L~l~~~~l~~~~~~lp~~L~~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~ 683 (1382)
.++.++..+..-...+|..++.|.+.++.+..+|.. | ...+|++|+++++.+..+.. ..+..+++|++|+|++|...
T Consensus 8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH-HHHHCCCCCCEEECCCCCCC
T ss_conf 44877798052641248887688898997787597887178767588788996485697-78740667688889998567
Q ss_pred CCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 7689-988887665886437325421211114878785470459888833784579999997997338999998830001
Q 000630 684 ASIP-DLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDIC 762 (1382)
Q Consensus 684 ~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~ 762 (1382)
...+ .+..+++|++|++++|......+..++.+++|++|++++|......|..+.++++|++|++++|......+..+.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 56854530388889898989966853966741567888898989952466721112455677797458843652978862
Q ss_pred --CCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHH--HCCCCCCCCCCCCCCCC-CCHHCCCCC
Q ss_conf --658751999248346325-811139999959972899899988714653--10123210033446744-770001899
Q 000630 763 --SMRSLKELLVDGTAIEKL-PQSIFHLVKLEKLNLGKCKSLKQLPNCIGT--QLIALKELSFNYSAVEE-LPDSVGHMG 836 (1382)
Q Consensus 763 --~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l~~~~~~--~l~~L~~L~l~~~~l~~-l~~~l~~l~ 836 (1382)
.+++|++|++++|.+..+ |..+..+.+|+.|++.++.........+.. ..++|+.|+++++.+.. .+..+..++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 44666321798889825655815553223445543056646805677787775315100887457743646866751467
Q ss_pred --CCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-----CCCC----CCC
Q ss_conf --998699316689986778757633330313147787665-7666887455301356744777-----7710----003
Q 000630 837 --NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNL-PASIGSLSYLKAFSVGRCQFLS-----ELPD----SIE 904 (1382)
Q Consensus 837 --~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~-----~~~~----~l~ 904 (1382)
+|+.|++++|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|...+ .+|. .+.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCC
T ss_conf 67788877878876756802116741056855778856765865626788855773633132133333554543865624
Q ss_pred CCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCC-CCC--CCCCCCEEECCCCCCCCC-CCCCCCCCC
Q ss_conf 8998859956999675685-122786566566434774677-4562-212--787888998016547646-843237777
Q 000630 905 GLASLVELQLDGTSIRHLP-DQIGGLKMLDKLVMRNCLSLK-TLPD-SIG--SILTLTTLNIVNASITRM-PESIGILEN 978 (1382)
Q Consensus 905 ~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~-~l~--~~~~L~~L~L~~n~l~~l-~~~~~~l~~ 978 (1382)
.+++|+.|++++|.+..++ ..+..+++|+.|++++|.... .++. .+. ..++|+.|++++|.+..+ +..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCC
T ss_conf 67778888798982687885574065687289887980144323532202455686766889999777677544207788
Q ss_pred CCEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 8554233322345552-0002876665666257547567-8333899888699846999754684111003454346313
Q 000630 979 LVILRLNECKQLEKLP-ASMGKLKSLVHLLMEETAVTEL-PESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSF 1056 (1382)
Q Consensus 979 L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~i-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l 1056 (1382)
|+.|++++|.+.+.++ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+. ..+..|..+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~----------~~~~~p~~~ 476 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK----------NVDSSPSPF 476 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB----------CTTCSSCTT
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCC----------CCCCCCCCC
T ss_conf 8888677875754357553257546127844899754227645500754310110146442----------256677645
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH---------HCCCCCCCCEEECCCCCCCCCCCC--
Q ss_conf 687773511033722578899744888888786655889975820---------023984455310256657887899--
Q 000630 1057 CNLSSLEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPS---------SLRGLSHLKNLLLPYCQELKSLPP-- 1125 (1382)
Q Consensus 1057 ~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~ip~-- 1125 (1382)
.++++|+.|++++|.+++..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|+. ..+|.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCC-CCCCHHH
T ss_conf 557878999899998776794463455346888588997300000004677414233799888888999978-8779777
Q ss_pred --CCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCC-CC-CCCCCCEEECCCCCCC
Q ss_conf --999975897688656656337-78889898894217889878876-55-7433460103378777
Q 000630 1126 --LPSSLEEVNVANCFALESICD-LSNLKSLKRLNLTNCEKLVDISG-LE-SLKSLKWLYMSGCNAC 1187 (1382)
Q Consensus 1126 --~~~sL~~L~l~~c~~l~~~~~-~~~l~~L~~L~ls~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~ 1187 (1382)
..++|+.|++++|.--..+.. +..+++|+.|++++|......+. +. .+++|+.+++++|+..
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCC
T ss_conf 3466675223899997776797683789888889899996870596683011466577983189702
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=380.63 Aligned_cols=214 Identities=17% Similarity=0.113 Sum_probs=112.9
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCC
Q ss_conf 993589999999988846552675577875211245572223446287069986887689-9888876658864373254
Q 000630 628 LQWKDCKMKTLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIP-DLSEHQKLEKLVLERCCRL 706 (1382)
Q Consensus 628 L~~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 706 (1382)
+.+.+..++.+|..+. .++++|+++++.+..+.. ..+..+++|++|++++|......| .+..+++|++|++++|...
T Consensus 16 ~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCCCCCCCCCC-CCCCEEECCCCCCCEECH-HHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCC
T ss_conf 5746888451898888-876788788897577375-45557766748868877366439777306010688678798563
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCCC-CCC
Q ss_conf 2121111487878547045988883378457999999799733899999-88300016587519992483463258-111
Q 000630 707 TKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLK-ELPEDICSMRSLKELLVDGTAIEKLP-QSI 784 (1382)
Q Consensus 707 ~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~L~~~~i~~lp-~~i 784 (1382)
...|..++.+++|++|++++|......+..+.++++|++|++++|.... .+|..++++++|++|++++|.+..++ ..+
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHH
T ss_conf 04852207865378887037755544511348988779896878852325306867326777788766885310573341
Q ss_pred CCCCC----CCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC--CCCHHCCCCCCCCEEEECC
Q ss_conf 39999----9599728998999887146531012321003344674--4770001899998699316
Q 000630 785 FHLVK----LEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVE--ELPDSVGHMGNLEKLSLIG 845 (1382)
Q Consensus 785 ~~l~~----L~~L~L~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~L~~ 845 (1382)
..+++ +..|++++|.. ..++..... ..+|+.|++++|.+. ..+..+.+++.|+.+.+..
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPI-DFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCC-CEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred HHHHCCCCCCCEEECCCCCC-CEECCCCCC-CCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 21203420024300468975-325711056-760433524678561667788860266565231411
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=380.59 Aligned_cols=517 Identities=19% Similarity=0.166 Sum_probs=205.1
Q ss_pred ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC
Q ss_conf 3589999999988846552675577875211245572223446287069986887689-988887665886437325421
Q 000630 630 WKDCKMKTLPSDFRPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLASIP-DLSEHQKLEKLVLERCCRLTK 708 (1382)
Q Consensus 630 ~~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~ 708 (1382)
+.+..+..+|..+ +.++++|+++++.+..+.. ..+..+++|++|+|++|......| .|..+++|++|++++|.....
T Consensus 19 c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 19 CENLGLNEIPGTL-PNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp CTTSCCSSCCTTS-CTTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCH-HHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 7779806286778-9867589815873471796-6725676652897889835524851136843367644889856545
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCC
Q ss_conf 211114878785470459888833784579999997997338999998830001658751999248346325-8111399
Q 000630 709 IHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICSMRSLKELLVDGTAIEKL-PQSIFHL 787 (1382)
Q Consensus 709 ~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l-p~~i~~l 787 (1382)
.|..++.+++|++|++++|......|..+.++++|++|++++|.........+..+++|++|++++|.+..+ +..+..+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHH
T ss_conf 86552344215376521267665781012237822389887983411476545687656877765684455496563322
Q ss_pred CCCC--EEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCC-----CCCCCCCCCCC
Q ss_conf 9995--9972899899988714653101232100334467447700018999986993166899-----86778757633
Q 000630 788 VKLE--KLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAVEELPDSVGHMGNLEKLSLIGCGSI-----TTIPDSIGHLK 860 (1382)
Q Consensus 788 ~~L~--~L~L~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~~~~~-----~~~~~~l~~l~ 860 (1382)
++|+ .|++++|......|..+. ...|+.|++..+. .++..+..+.++....+...... ...+..+..+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred CCCCEEEEECCCCCCCCCCHHHHH--HCCCCCCCCCCCH--HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHH
T ss_conf 156403896679814754866730--0100135567726--677776513356442200201102641226866743032
Q ss_pred --CCEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEE
Q ss_conf --33031314778766576-668874553013567447777710003899885995699967568-51227865665664
Q 000630 861 --SLIEFLIDGTAVKNLPA-SIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQLDGTSIRHL-PDQIGGLKMLDKLV 936 (1382)
Q Consensus 861 --~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 936 (1382)
+|+.++++++.+..++. .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+..+ +..+..+++|+.|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 075059994457658557777445667888956288267-7782141654688897716876867602330157689888
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 347746774562-212787888998016547646---8432377778554233322345552000287666566625754
Q 000630 937 MRNCLSLKTLPD-SIGSILTLTTLNIVNASITRM---PESIGILENLVILRLNECKQLEKLPASMGKLKSLVHLLMEETA 1012 (1382)
Q Consensus 937 l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 1012 (1382)
+++|.....++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 98997444346245506675898878899666456752210567888989898996775788873477457768788886
Q ss_pred CCCC-C-CCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf 7567-8-3338998886998469997546841110034543463136877735110337225788---997448888887
Q 000630 1013 VTEL-P-ESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELDAQGWRIGGK---IPDDFEKLSSLE 1087 (1382)
Q Consensus 1013 i~~i-~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~i~~~---~~~~l~~l~~L~ 1087 (1382)
+... + ..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+. .+..+..+++|+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDI------------SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBT------------TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCC------------CCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 7775652124176558889898985577------------6877873788788898989988854345431240488766
Q ss_pred EEECCCCCCCC-CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 86655889975-82002398445531025665788789999997589768865665633778889898894217889878
Q 000630 1088 ILNLGNNNFCN-LPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFALESICDLSNLKSLKRLNLTNCEKLVD 1166 (1382)
Q Consensus 1088 ~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~l~~~~~~~~l~~L~~L~ls~~~~~~~ 1166 (1382)
.|++++|.++. .|..+..+++|+.|++++|+..+..| ..+..++.| .|++++|.....
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI--------------------EALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG--------------------GGGTTCCSC-EEECCSSCCCCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--------------------HHHCCCCCC-EEECCCCCCCCC
T ss_conf 88799996670686463265678889898980686896--------------------684756651-898768941426
Q ss_pred CC-CCCCCCCCCEEECCCCCC
Q ss_conf 87-655743346010337877
Q 000630 1167 IS-GLESLKSLKWLYMSGCNA 1186 (1382)
Q Consensus 1167 ~~-~~~~~~~L~~L~l~~~~~ 1186 (1382)
.+ .+..+++|+.+++++|+.
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCE
T ss_pred CHHHCCCCCCCCEEECCCCCC
T ss_conf 876625677878896779986
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=378.07 Aligned_cols=497 Identities=21% Similarity=0.185 Sum_probs=305.4
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 9960755799756566761289935899999999-88-846552675577875211245572223446287069986887
Q 000630 607 LQINYTKLEGSFKFLPHELKWLQWKDCKMKTLPS-DF-RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLA 684 (1382)
Q Consensus 607 L~l~~~~l~~~~~~lp~~L~~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~~ 684 (1382)
++.++..+..-...+|..++.|.+.++.+..++. .| ...+|++|+++++.+..+.. ..+..+++|++|+|++|....
T Consensus 16 ~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCC
T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH-HHHHCHHHCCEEECCCCCCCC
T ss_conf 5746888451898888876788788897577375455577667488688773664397-773060106886787985630
Q ss_pred CCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 689-98888766588643732542121111487878547045988883-3784579999997997338999998830001
Q 000630 685 SIP-DLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLI-ELPSDVSGLKHLENLILSDCSKLKELPEDIC 762 (1382)
Q Consensus 685 ~~~-~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~ 762 (1382)
..| .+..+++|++|++++|......+..++.+++|++|++++|.... .+|..+.++++|++|++++|......+..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHH
T ss_conf 48522078653788870377555445113489887798968788523253068673267777887668853105733412
Q ss_pred CCCCCC----EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHHHHHCCCCCCCCCCCCCCCC----------
Q ss_conf 658751----9992483463258111399999599728998999-8871465310123210033446744----------
Q 000630 763 SMRSLK----ELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLK-QLPNCIGTQLIALKELSFNYSAVEE---------- 827 (1382)
Q Consensus 763 ~l~~L~----~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~l~~---------- 827 (1382)
.+.+|+ .|++++|.+..++.......+|+.|++++|.... ..|..+.. ++.++.+.+..+....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN-LAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT-TTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred HHHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 12034200243004689753257110567604335246785616677888602-66565231411110367741026817
Q ss_pred CCHHCCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7700018999986993-166899867787576333303131477876657666887455301356744777771000389
Q 000630 828 LPDSVGHMGNLEKLSL-IGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGL 906 (1382)
Q Consensus 828 l~~~l~~l~~L~~L~L-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l 906 (1382)
.+..+..+ .++.+.+ ..+...+.+|. +..+++|+.|++.++.+..++ .+..+++|+.|++++|.+ +.+|. + .+
T Consensus 254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l 327 (606)
T 3vq2_A 254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DL 327 (606)
T ss_dssp GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CC
T ss_pred HHHHHHHC-CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHHHH-HCCCCCCCCEEECCCCCC-CCCCC-C-CC
T ss_conf 76666543-4745012366555543222-354887898771476604435-433401177897646667-65466-7-88
Q ss_pred CCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 98859956999675-6851227865665664347746774--56221278788899801654764684323777785542
Q 000630 907 ASLVELQLDGTSIR-HLPDQIGGLKMLDKLVMRNCLSLKT--LPDSIGSILTLTTLNIVNASITRMPESIGILENLVILR 983 (1382)
Q Consensus 907 ~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 983 (1382)
++|+.|++++|... .+ .+..+++|+.|++++|...+. ++..+..+++|+.|++++|.+..++..+..+++|+.|+
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 75564454478685310--0024898887977587368775201221467755486788995300055406888889658
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 33322345552-000287666566625754756-7833389988869984699975468411100345434631368777
Q 000630 984 LNECKQLEKLP-ASMGKLKSLVHLLMEETAVTE-LPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSS 1061 (1382)
Q Consensus 984 L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~-i~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~ 1061 (1382)
+++|.+.+..+ ..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+.+ ..+|..+.++++
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~l~~ 474 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-----------NTLSNVFANTTN 474 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-----------GEECSCCTTCTT
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----------CCHHHHHCCCCC
T ss_conf 988705875376456462137889896897874335553477878989898983798-----------546776045788
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 3511033722578899744888888786655889975-820023984455310256657887899
Q 000630 1062 LEELDAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCN-LPSSLRGLSHLKNLLLPYCQELKSLPP 1125 (1382)
Q Consensus 1062 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~l~~ip~ 1125 (1382)
|+.|++++|.+++..|..+..+++|+.|++++|.++. .|..+..+++|+.|++++|+ +..+|.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCH
T ss_conf 9989898885776486561546468989898995787487770688768988898983-766687
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=377.09 Aligned_cols=525 Identities=18% Similarity=0.159 Sum_probs=410.4
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 996075579975656676128993589999999-988-846552675577875211245572223446287069986887
Q 000630 607 LQINYTKLEGSFKFLPHELKWLQWKDCKMKTLP-SDF-RPFQLAVLDLSESGIEYLWGSHTNKVAKNLMVLNLRGCWNLA 684 (1382)
Q Consensus 607 L~l~~~~l~~~~~~lp~~L~~L~~~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~l~~~~~~~~~~~L~~L~L~~~~~~~ 684 (1382)
++..+..+..-...+|..++.|.+.++.++.++ ..| ...+|++|+++++.+..+.. ..+..+++|++|+|++|....
T Consensus 17 ~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECH-HHCCCCCCCCEEECCCCCCCC
T ss_conf 7777798062867789867589815873471796672567665289788983552485-113684336764488985654
Q ss_pred CCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 689-9888876658864373254212111148787854704598888337845799999979973389999988300016
Q 000630 685 SIP-DLSEHQKLEKLVLERCCRLTKIHESVGNLSSLLHLNLRDCRNLIELPSDVSGLKHLENLILSDCSKLKELPEDICS 763 (1382)
Q Consensus 685 ~~~-~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~~~~~l~~ 763 (1382)
..| .+..+++|++|++++|......+..++.+++|++|++++|......+..+..+++|++|++++|......+..++.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH
T ss_conf 58655234421537652126766578101223782238988798341147654568765687776568445549656332
Q ss_pred CCCCC--EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC-----CCC-CHHCCCC
Q ss_conf 58751--999248346325811139999959972899899988714653101232100334467-----447-7000189
Q 000630 764 MRSLK--ELLVDGTAIEKLPQSIFHLVKLEKLNLGKCKSLKQLPNCIGTQLIALKELSFNYSAV-----EEL-PDSVGHM 835 (1382)
Q Consensus 764 l~~L~--~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l-----~~l-~~~l~~l 835 (1382)
+++|+ .|++++|.+..++.......+|+.|++++|.. ++..+.. +.++....+..... ..+ +..+..+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHH---HHHHHHH-CCCCCHHHEECHHHCCCCCCCCCHHHHCHH
T ss_conf 215640389667981475486673001001355677266---7777651-335644220020110264122686674303
Q ss_pred C--CCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9--99869931668998677875763333031314778766576668874553013567447777710003899885995
Q 000630 836 G--NLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNLPASIGSLSYLKAFSVGRCQFLSELPDSIEGLASLVELQ 913 (1382)
Q Consensus 836 ~--~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 913 (1382)
. +|+.|++++|.+....+..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred HCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 20750599944576585577774456678889562882677782141654688897716876867602330157689888
Q ss_pred CCCCCCC-CCCC-CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEECCCCCC
Q ss_conf 6999675-6851-2278656656643477467745--62212787888998016547646-8432377778554233322
Q 000630 914 LDGTSIR-HLPD-QIGGLKMLDKLVMRNCLSLKTL--PDSIGSILTLTTLNIVNASITRM-PESIGILENLVILRLNECK 988 (1382)
Q Consensus 914 L~~~~i~-~l~~-~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~ 988 (1382)
+++|.+. .++. .+..+++|+.|++++|...... +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 98997444346245506675898878899666456752210567888989898996775788873477457768788886
Q ss_pred CCCCCCC-CCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 3455520-00287666566625754756-783338998886998469997546841110034543463136877735110
Q 000630 989 QLEKLPA-SMGKLKSLVHLLMEETAVTE-LPESFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEELD 1066 (1382)
Q Consensus 989 ~~~~~~~-~l~~l~~L~~L~l~~n~i~~-i~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 1066 (1382)
+.+..+. .+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+.+. ....+..+..+++|+.|+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG---------NIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG---------EECSSCGGGGCTTCCEEE
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC---------CCCCCHHHCCCCCCCEEE
T ss_conf 77756521241765588898989855776877873788788898989988854---------345431240488766887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 3372257889974488888878665588997-582002398445531025665788789999997589768865665633
Q 000630 1067 AQGWRIGGKIPDDFEKLSSLEILNLGNNNFC-NLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCFALESIC 1145 (1382)
Q Consensus 1067 ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~~l~~~~ 1145 (1382)
+++|.+++..|..+..+++|+.|++++|.++ ..|..+..++.| .|++++|+..+..|.
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-------------------- 541 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS-------------------- 541 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG--------------------
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHH--------------------
T ss_conf 99996670686463265678889898980686896684756651-898768941426876--------------------
Q ss_pred CCCCCCCCCEEECCCCCCCCC
Q ss_conf 778889898894217889878
Q 000630 1146 DLSNLKSLKRLNLTNCEKLVD 1166 (1382)
Q Consensus 1146 ~~~~l~~L~~L~ls~~~~~~~ 1166 (1382)
.+..+++|+.+++++|+...+
T Consensus 542 ~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 542 LLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GHHHHHTSSEEECTTCCEECS
T ss_pred HCCCCCCCCEEECCCCCCCCC
T ss_conf 625677878896779986166
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=374.49 Aligned_cols=502 Identities=15% Similarity=0.131 Sum_probs=318.9
Q ss_pred CCCCCEEEEECCCCCCCCC-CCC-CCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCC
Q ss_conf 6676128993589999999-988-846552675577875-211245572223446287069986887689-988887665
Q 000630 621 LPHELKWLQWKDCKMKTLP-SDF-RPFQLAVLDLSESGI-EYLWGSHTNKVAKNLMVLNLRGCWNLASIP-DLSEHQKLE 696 (1382)
Q Consensus 621 lp~~L~~L~~~~~~l~~lp-~~~-~~~~L~~L~L~~~~i-~~l~~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~ 696 (1382)
+|+.++.|.+.++.+..++ ..| ...+|++|+++++.. ..+ ....+..+++|++|+|++|......| .+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC-CHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 9998688888778678329667766213708867899774441-977853787788887989958531976715786658
Q ss_pred EEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEE
Q ss_conf 8864373254212111--1487878547045988883378-457999999799733899999883000165--8751999
Q 000630 697 KLVLERCCRLTKIHES--VGNLSSLLHLNLRDCRNLIELP-SDVSGLKHLENLILSDCSKLKELPEDICSM--RSLKELL 771 (1382)
Q Consensus 697 ~L~L~~~~~~~~~~~~--i~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~~~~~l~~l--~~L~~L~ 771 (1382)
+|+|++|.....++.. ++.+++|++|++++|......+ ..+.++++|++|++++|......+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEE
T ss_conf 70176788973404676455667999888987864232566557638898989898984776678875355677503578
Q ss_pred ECCCCCC-CCCCCCCCCCC------CCEEECCCCCCCCCCCHHHHHHC--CCCCCCCCCCCC---------CCC-CCHHC
Q ss_conf 2483463-25811139999------95997289989998871465310--123210033446---------744-77000
Q 000630 772 VDGTAIE-KLPQSIFHLVK------LEKLNLGKCKSLKQLPNCIGTQL--IALKELSFNYSA---------VEE-LPDSV 832 (1382)
Q Consensus 772 L~~~~i~-~lp~~i~~l~~------L~~L~L~~~~~~~~l~~~~~~~l--~~L~~L~l~~~~---------l~~-l~~~l 832 (1382)
+++|.+. ..|..+..+.+ |+.|++++|......+..+...+ ..+..+.+..+. +.. ....+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 97886665545533223772235740079657886865677888764274410011212122346644456688985565
Q ss_pred CC--CCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 18--99998699316689986778757633330313147787665-7666887455301356744777771000389988
Q 000630 833 GH--MGNLEKLSLIGCGSITTIPDSIGHLKSLIEFLIDGTAVKNL-PASIGSLSYLKAFSVGRCQFLSELPDSIEGLASL 909 (1382)
Q Consensus 833 ~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 909 (1382)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+....+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 25554786189897994551586345258999999897981898796883688899989898997885187884689999
Q ss_pred CEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 599569996756851-2278656656643477467745622127878889980165476468432377778554233322
Q 000630 910 VELQLDGTSIRHLPD-QIGGLKMLDKLVMRNCLSLKTLPDSIGSILTLTTLNIVNASITRMPESIGILENLVILRLNECK 988 (1382)
Q Consensus 910 ~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~ 988 (1382)
+.|++++|.+..++. .+..+++|+.|++++|.... +..+++|+.|++++|.+..+|.. ..+++.|++++|.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENR 412 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----CCCCCCCCHHCCCCCCCCCCCCC---CCCCCEEECCCCC
T ss_conf 989898998776286661378889998898997786-----16889823200589972314554---5543122145675
Q ss_pred CCCC-CCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 3455-52000287666566625754756783--33899888699846999754684111003454346313687773511
Q 000630 989 QLEK-LPASMGKLKSLVHLLMEETAVTELPE--SFGMLSSLMVLKMKKPSVKARNSSAREKQKLTVLPTSFCNLSSLEEL 1065 (1382)
Q Consensus 989 ~~~~-~~~~l~~l~~L~~L~l~~n~i~~i~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 1065 (1382)
+.+. .+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+... ...+..+..+.++++|+.|
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-------~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA-------WETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS-------CCSCCCSSCSSCBCCEECC
T ss_pred CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCHHHHCCCCCCCEE
T ss_conf 345755666512776666667787125555433356687310024777736441-------0135535554475536577
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 03372257889974488888878665588997582002398445531025665788789999997589768865
Q 000630 1066 DAQGWRIGGKIPDDFEKLSSLEILNLGNNNFCNLPSSLRGLSHLKNLLLPYCQELKSLPPLPSSLEEVNVANCF 1139 (1382)
Q Consensus 1066 ~ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ip~~~~sL~~L~l~~c~ 1139 (1382)
++++|.+++..+..+..+++|+.|+|++|+++.+|..... ++|+.|++++|++.+..|....+|+.+++++|+
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred ECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH-CCCCEEECCCCCCCCCCHHHHCCCCEEEECCCC
T ss_conf 7889856553955704501221569999978745710110-045588898884788896683776889931997
No 10
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=363.61 Aligned_cols=306 Identities=15% Similarity=0.145 Sum_probs=240.5
Q ss_pred CCHHHHHHHHHHHHCCC-CCCCEEEEEECCCCCHHHHHHHHHHH----HHHCCCCCCEEEEECCCCCCCC--CCHHHHHH
Q ss_conf 54168999999982178-99927999974998717899999999----9840356312233020101688--87799999
Q 000630 185 VGLDFRIKEVIRLLDVK-SSNVLVLGLFGLGGIGKTTLAKAVYN----KLVDQFEHRSFISNVRETSGQN--DGLVSLQN 257 (1382)
Q Consensus 185 vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~--~~~~~l~~ 257 (1382)
|||+.++++|.++|..+ ....++|+|+||||+||||||+++|+ ++..+|+.++|+. ++.. .++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-----vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-----DSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-----CCCCSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-----ECCCCCCCHHHHHH
T ss_conf 7841799999998725157896289998699998899999999840698746699579999-----78987879999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHCHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 9998851899999989985430100199999988099-279998179994778567169996799986999928878643
Q 000630 258 KLIFDLSSGNKVPTENVPTENVVTANIAEIKNVVRER-KVFVVLDDVDDPSQLNALCGDKEWFSEGSRIIITTRDRGALP 336 (1382)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~ 336 (1382)
.++.++...............+.......+++.+.++ |+||||||||+.+++ .+.. .+||+||||||++.++.
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHH
T ss_conf 99999853755345555331469999999999976898489999799971441-5432-----69988999749779999
Q ss_pred CCC-CCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH-HH
Q ss_conf 489-8609981899978899999882039999990499999999999699938899998641899988899999999-97
Q 000630 337 EHY-VNQLYEVQKLDSSRALQLFSYHALGRENPTDKFFKISEQIVSLTGGLPLALEVFGAFLFDKRRITEWEDALEK-LR 414 (1382)
Q Consensus 337 ~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~~~g~PLal~~~g~~L~~~~~~~~w~~~l~~-L~ 414 (1382)
.+. ....|+|++|++++|++||.++||+... .+.+.+++++|+++|+|+|||++++|+.++.+ .. +|...+.. +.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~ 356 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLE 356 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHH
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-HH-HHHHHHHHHHH
T ss_conf 70889738989998989999999987448998-55689999999999599839999999984434-48-99987578761
Q ss_pred HCCCCHHHHHHHHHCCCCCCCCCCEEE-----------EEECCCCCCCCCHHHHHHHHHHC--CCCH-----------HH
Q ss_conf 239910899897631488801201134-----------33104645999978999997537--9974-----------54
Q 000630 415 KIRPNNLQEVLKISFDGLDQQDKCIFL-----------DIACLFVKMGMNKEDAIDILKGC--GFRA-----------EI 470 (1382)
Q Consensus 415 ~~~~~~i~~~l~~s~~~L~~~~k~~fl-----------~~a~f~~~~~~~~~~l~~~~~~~--~~~~-----------~~ 470 (1382)
......+..++..||+.|+.+.|.||+ +||+||+++.++ +..|.++ |+.. ..
T Consensus 357 ~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 357 SRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp HHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHHH
T ss_conf 36477789897516202267999997526522336743235608997666----53311013550026778999999999
Q ss_pred HHHHHHCCCCEEEECC---CEEECCHHHHHHHHHHHHHCCC
Q ss_conf 2899840364279239---9398129999999988730377
Q 000630 471 AIVVLMKKSLIKITED---DTLWMHDQLRDMGRQIVQQESL 508 (1382)
Q Consensus 471 ~i~~L~~~~li~~~~~---~~~~mHdll~~~~~~~~~~e~~ 508 (1382)
+++.|+++||++.... .+|.|||++|+|+++++.+++.
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99999875883671479804999676999999999889899
Done!