Citrus Sinensis ID: 000632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380-
MHATMQQGGRSPKPLNGPTSTSQLKPSSDSVQNSVSSFPSQVKDSGHGRSENVLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQAVSGLARPRIPEVSHGGNRNSGSSSEIAIKSSSMQLSTSKTASVKLVQGETVAKPASACASPTSTKSAPSPASGSTNLKDGQLRNTSGTSDLPSTPTRDEKSSSSSQSHNNSQSCSSDHAKTGGFSRKEDARSSTAGSMTVNKISGGSSWPRKISQWLSHTALSGVQMDHGSSRNSSSHKNPGSEKLSQSSLTCEKVVDMSVVEGNSHKLIVKIPNQGRSPAQSAYAVSLKEPSVMNSRASSPVPLDKHDRFDRNFKEKSDEQCRAGDDPGKTAEVSKTASSSSKNELKSGKSHNVSFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAGEISKSDVVSPVGSPRRRTPVYEPFGNENDSRVKSFPGDQFSDGAGDAHGKLGVDHTSWAKNGDSNQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTPDCAGKNPEEDKAGVRVDTNGTSDDKQRSSASLSQEDKVSELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIDEVKDEMVDEVDSKSNVNHSEEQKSDWKSNASMGHDLWAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEASTALGVQETDYHVKTEAPKLTASGGDKAQESTPATIDASSSAARVSDAEAKVEFDLNEGFDGDEGKYGESSTLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSAATSAFRPAEPRKILEMPLGVTNISVPDSTSGKLSRSLLDIDLNVPDERVLEDLASRSSAQDIVAASDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFIDISNYSTSNGNKTDVLVQTGTSSGGLSNGEVNVCRDFDLNDGPVDDMNAEPTVFHQHPRNVQAQAPISGLRISNAETGNFSSWLPRGNTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVSISDGSNSASAESSLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYKRPSWH
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccc
ccEEEcccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccEEHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEccccccccccccccccc
mhatmqqggrspkplngptstsqlkpssdsvqnsvssfpsqvkdsghgrsenVLRSEISKItengglvdfeGVEKFIQLMvpdrnerkIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVhkgkigdgsnpkdgdkaieefplvslraldklpvnlhALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMnaksgsnqavsglarpripevshggnrnsgssSEIAIKsssmqlstsktaSVKLVqgetvakpasacasptstksapspasgstnlkdgqlrntsgtsdlpstptrdeksssssqshnnsqscssdhaktggfsrkedarsstagsmtvnkisggsswprkISQWLSHTAlsgvqmdhgssrnssshknpgseklsqssltceKVVDMSVVEGNSHKLIVKipnqgrspaqsayavslkepsvmnsrasspvpldkhdrfdrnfkeksdeqcragddpgktaevsktassssknelksgkshnvsFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAageisksdvvspvgsprrrtpvyepfgnendsrvksfpgdqfsdgagdahgklgvdhtswakngdsnqekpagdltgrintspmdlqqsgdpcqeniensnkivmtkgtpdcagknpeedkagvrvdtngtsddkqrssaslsqedkvselnqgvecnvvdgslshpslefhcenkktaceglkcfeqteqkppliathpenvkgadgellhesgpgedmaskniDEVKDEMVdevdsksnvnhseeqksdwksnasmghdLWAVSHvssahsedkgehveenlegkevkeqcfadsapleastalgvqetdyhvkteapkltasggdkaqestpatidasssaarvsdaeakvefdlnegfdgdegkygesstltgpacsgsvqqlinplplpissvtnslpaSITVAaaakgpfvppedllrskgalgwkgsaatsafrpaeprkilemplgvtnisvpdstsgklsrslldidlnvpderVLEDLASRSSAQDIVAASdltnnldgsrcevmgstsvrgsggldldlnraeefidisnystsngnktDVLVQTgtssgglsngevnvcrdfdlndgpvddmnaeptvfhqhprnvqaqapisglrisnaetgnfsswlprgntystitvpsvlpdrgeqpfpfapgvhqrmlapstsgspfspdvfrgpvlssspavpfpstpfqypvfpfgssfplpsatfsvgsttyvdssssgrlcfpavnsqlmgpagavpshftrpyvvsisdgsnsasaesSLKWGRQvldlnagpgvpdiegrnetpplvprqlsVAGAQVLLEDQARMYQMAgghlkrrepeggwdgykrpswh
mhatmqqggrspkplngpTSTSQLkpssdsvqnSVSSfpsqvkdsghgrsenvlrseiskitengglvdfegVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHkgkigdgsnpkdgDKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAemnaksgsnqavsglarpripevshggnrnsgssSEIAIKSSSMQLSTSKTASVKLVQGETVakpasacasptstksapspasgstnlkdgqlrntsgtsdlpstptrdeksssssqshnnsqscssdhaktggfsrkedarsstagsmtvnkisggsswPRKISQWLSHTALSGVQMDHGSsrnssshknpgseklsqssltCEKVVDMSVVEGNSHKLIvkipnqgrspaQSAYAVSLKepsvmnsrasspvpldkhdrfdrnfkeksdeqcragddpgktaevsktassssknelksgkshnvsfRSINALIESCVKYSEAKTSVVVGDDAGMNLLASvaageisksdvvspvgsprrrtpvyepfgnendsrvKSFPGDQFSDGAGDAHGKLGVDHTSWAKNGDSNQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTpdcagknpeedkagvrvdtngtsddkqrssaslsqedkvselnqGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIDEVKDEMVDEVdsksnvnhseeqksdwksnasMGHDLWAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEASTALGVQETDYHVKTeapkltasggdkaqestpatidasssaarvsdaeaKVEFDLNEGFDGDEGKYGESSTLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSaatsafrpaeprkilemplgvtnisvpdstsgklsrslldidlnVPDERVLEDLAsrssaqdivaasdltnnldgsrcEVMGSTSVRGSGGLDLDLNRAEEFIDisnystsngnktDVLVQTGTssgglsngevNVCRDFDLNDGPVDDMNAEPTVFHQHPRNVQAQAPISGLRISNAETgnfsswlprgnTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVSISDGSNSASAESSLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGghlkrrepeggwdgykrpswh
MHATMQQGGRSPKPLNGPTSTSQLKpssdsvqnsvssfpsqvKDSGHGRSENVLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQAVSGLARPRIPEVshggnrnsgssseiaiksssMQLSTSKTASVKLVQGETVakpasacasptstksapspasGSTNLKDGQLRNTSGTSDLPSTPTRDEKsssssqshnnsqscssDHAKTGGFSRKEDARSSTAGSMTVNKISGGSSWPRKISQWLSHTALSGVQMDHGSSRNSSSHKNPGSEKLSQSSLTCEKVVDMSVVEGNSHKLIVKIPNQGRSPAQSAYAVSLKEPSVMNSRASSPVPLDKHDRFDRNFKEKSDEQCRAGDDPGKTAEVSKTASSSSKNELKSGKSHNVSFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAGEISKSDVVSPVGSPRRRTPVYEPFGNENDSRVKSFPGDQFSDGAGDAHGKLGVDHTSWAKNGDSNQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTPDCAGKNPEEDKAGVRVDTNGTSDDKQRSSASLSQEDKVSELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIdevkdemvdevdSKSNVNHSEEQKSDWKSNASMGHDLWAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEASTALGVQETDYHVKTEAPKLTASGGDKAQESTPATIDasssaarvsdaeaKVEFDLNEGFDGDEGKYGESSTLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSAATSAFRPAEPRKILEMPLGVTNISVPDSTSGKLSRSLLDIDLNVPDERVLEDLASRSSAQDIVAASDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFIDISNYSTSNGNKTDVLVQTGTSSGGLSNGEVNVCRDFDLNDGPVDDMNAEPTVFHQHPRNVQAQAPISGLRISNAETGNFSSWLPRGNTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVsisdgsnsasaessLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYKRPSWH
************************************************************ITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKI************IEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTW********************************************************************************************************************************************************************************************************************VVDMSVVE***HKLIV*************************************************************************************FRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAA**********************************************************************************************************************************************************ECNVVDGSLSHPSLEFHCENKKTACEGLKCF*******************************************************************************************************************************************************************************************************QLINPLPLPISSVTNSLPASITVAAAAKGPFV*****L****ALGW***********************V*******************I***************************************************DLDLNRAEEFIDISNY************************EVNVCRDFDL********************************I****TGNFSSWLPRGNTYSTITVPSV*************************************************TPFQYPVFPFGSSFPLPSATFSVGSTTYVD****GRLCFPAVNSQLMGPAGAVPSHFTRPYVVS*************************************************GAQVLL********************************
************************************************************************V******************VCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQ**********************FPLVSLRALDKL************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLDLNAG*************************************************************
***************************************************NVLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQAVSGLARPRIPEV************EIAIK************SVKLVQGET*************************NLKDGQLRNTS****************************************************TVNKISGGSSWPRKISQWLSHTALSG***************************TCEKVVDMSVVEGNSHKLIVKIPNQGRSPAQSAYAVSLK************VPLDKHDRFDRNF**************************************NVSFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAGEIS************RRTPVYEPFGNENDSRVKSFPGDQFSDGAGDAHGKLGVDHTSWAKNGDSNQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTPDCAGKNPEEDKAGVRVD**********************ELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIDEVKDE***********************NASMGHDLWAVSH******************GKEVKEQCFADSAPLEASTALGVQETDYHVKTEAPKL****************************EAKVEFDLNEGFDGDEGKYGESSTLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSAATSAFRPAEPRKILEMPLGVTNISVPDSTSGKLSRSLLDIDLNVPDERVLEDLASRSSAQDIVAASDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFIDISNYSTSNGNKTDVLVQTGTSSGGLSNGEVNVCRDFDLNDGPVDDMNAEPTVFHQHPRNVQAQAPISGLRISNAETGNFSSWLPRGNTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVG**********GRLCFPAVNSQLMGPAGAVPSHFTRPYVVSIS***********LKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYKRPSWH
****************************************************VLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKG***********DKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAE*N********************************************************************************************************************************************************************************************************************NSHKLIVKIPNQ*******************************************************************************SFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAG*I*K**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************KVEFDLNEGFDGDEGKYGE*STLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWK**************************************SLLDIDLNVPDERVLEDLA*************************************DL*LNRAEEFIDISNYSTSNGNKTDVLVQ******************F**NDGPVDDMNAEP********NVQA******************S*LPRGNTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVSISDGSNSASAESSLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYK*****
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MHATMQQGGRSPKPLNGPTSTSQLKPSSDSVQNSVSSFPSQVKDSGHGRSENVLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNMFVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQAVSGLARPRIPEVSHGGNRNSGSSSEIAIKSSSMQLSTSKTASVKLVQGETVAKPASACASPTSTKSAPSPASGSTNLKDGQLRNTSGTSDLPSTPTRDEKSSSSSQSHNNSQSCSSDHAKTGGFSRKEDARSSTAGSMTVNKISGGSSWPRKISQWLSHTALSGVQMDHGSSRNSSSHKNPGSEKLSQSSLTCEKVVDMSVVEGNSHKLIVKIPNQGRSPAQSAYAVSLKEPSVMNSRASSPVPLDKHDRFDRNFKEKSDEQCRAGDDPGKTAEVSKTASSSSKNELKSGKSHNVSFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAGEISKSDVVSPVGSPRRRTPVYEPFGNENDSRVKSFPGDQFSDGAGDAHGKLGVDHTSWAKNGDSNQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTPDCAGKNPEEDKAGVRVDTNGTSDDKQRSSASLSQEDKVSELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIDEVKDEMVDEVDSKSNVNHSEEQKSDWKSNASMGHDLWAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEASTALGVQETDYHVKTEAPKLTASGGDKAQESTPATIDASSSAARVSDAEAKVEFDLNEGFDGDEGKYGESSTLTGPACSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSAATSAFRPAEPRKILEMPLGVTNISVPDSTSGKLSRSLLDIDLNVPDERVLEDLASRSSAQDIVAASDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFIDISNYSTSNGNKTDVLVQTGTSSGGLSNGEVNVCRDFDLNDGPVDDMNAEPTVFHQHPRNVQAQAPISGLRISNAETGNFSSWLPRGNTYSTITVPSVLPDRGEQPFPFAPGVHQRMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVSISDGSNSASAESSLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYKRPSWH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1381
255540759 1651 conserved hypothetical protein [Ricinus 0.983 0.822 0.547 0.0
359491606 1631 PREDICTED: uncharacterized protein LOC10 0.976 0.826 0.548 0.0
255540753 1712 DNA binding protein, putative [Ricinus c 0.974 0.786 0.551 0.0
147817646 1688 hypothetical protein VITISV_021504 [Viti 0.982 0.803 0.549 0.0
356507216 1701 PREDICTED: uncharacterized protein LOC10 0.958 0.777 0.507 0.0
356518993 1613 PREDICTED: uncharacterized protein LOC10 0.956 0.818 0.498 0.0
449441029 1606 PREDICTED: uncharacterized protein LOC10 0.958 0.823 0.499 0.0
449526349 1599 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.958 0.827 0.499 0.0
297819422 1613 hypothetical protein ARALYDRAFT_485166 [ 0.963 0.824 0.468 0.0
186510768 1613 BAH and TFIIS domain-containing protein 0.963 0.825 0.468 0.0
>gi|255540759|ref|XP_002511444.1| conserved hypothetical protein [Ricinus communis] gi|223550559|gb|EEF52046.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1353 bits (3503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 811/1480 (54%), Positives = 977/1480 (66%), Gaps = 122/1480 (8%)

Query: 1    MHATMQQGGRSPKPLNGPTSTSQLKPSSDSVQNSVSSFPSQVK----------------- 43
            MH  +QQGGRSPKP+NGPTSTSQLK  SDSVQNS SSFPSQVK                 
Sbjct: 195  MH--VQQGGRSPKPMNGPTSTSQLKLGSDSVQNSASSFPSQVKGKKRERGDQGTEPIKRE 252

Query: 44   --------DSGHGRSENVLRSEISKITENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRS 95
                    DS H R E+  +SEI+K TE GGLVD EGVEK +QLM+P+RNE+KIDLV RS
Sbjct: 253  RSSKLDDCDSSHSRPESFWKSEIAKFTEKGGLVDSEGVEKLVQLMLPERNEKKIDLVGRS 312

Query: 96   MLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSL 155
            +LAGV+AA DKFDCL +FVQ++GL VFDEWLQEVHKGKIGDGS+ KD DK IEEF LV L
Sbjct: 313  VLAGVIAATDKFDCLDQFVQLRGLPVFDEWLQEVHKGKIGDGSSHKDSDKCIEEFLLVLL 372

Query: 156  RALDKLPVNLHALQMGNM--FVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQ 213
            RALDKLPVNLHALQM N+   VNHLRTHK+LEIQKKAR+LVDTWKKRVEAEM+A+SGSN 
Sbjct: 373  RALDKLPVNLHALQMCNIGKSVNHLRTHKHLEIQKKARTLVDTWKKRVEAEMDARSGSNT 432

Query: 214  AVSGLARPRIPEVSHGGNRNSGSSSEIAIKSSSMQLSTSKTASVKLVQGETVAKPASACA 273
            AVS  ARPR+PEVSHG NR+SG++SEIA+KSS  Q S SK   VK+ Q ET+AK  S   
Sbjct: 433  AVSWAARPRLPEVSHGVNRHSGAASEIAMKSSVAQFSASKNTPVKIGQMETMAK--SLAV 490

Query: 274  SPTSTKSAPSPASGSTNLKDGQLRNTS--GTSDLPSTPTRDEKSSSSSQSHNNSQSCSSD 331
            SP S K  PS AS   + K+GQ+RNT   G SDLPS  TRDEKSSSSSQSHNNSQSCSSD
Sbjct: 491  SPGSMKPVPSSASAGNSTKEGQVRNTGVGGASDLPSIATRDEKSSSSSQSHNNSQSCSSD 550

Query: 332  HAKTGGFSRKEDARSSTAGSMTVNKISGGSSWPRKISQWLSHTALSGVQMDHGSSRNSSS 391
            HAK GG S KEDARSSTA SM  NK  GGSS  RK          +G+Q D GSSRN+S 
Sbjct: 551  HAKNGGVSGKEDARSSTAVSMAANKTIGGSSRHRKSVNGFQGGGATGIQRDSGSSRNASL 610

Query: 392  HKNPGSEKLSQSSLTCEKVVDMSVVEGNSHKLIVKIPNQGRSPAQSAYAVSLKEPSVMNS 451
            H+  G+EKLSQSSLTC+K VD+ + EGN+HKLIVKIPN+GRSPAQSA   S ++PSVMNS
Sbjct: 611  HRIQGAEKLSQSSLTCDKAVDVPIAEGNNHKLIVKIPNRGRSPAQSASGGSFEDPSVMNS 670

Query: 452  RASSPVPLDKHDRFDRNFKEKSD------------------------------------- 474
            RASSPV  DKH++ DRN KEK+D                                     
Sbjct: 671  RASSPVLSDKHEQLDRNLKEKNDVYRTNVVSDVNNESWQSNDFKEVLTGSDEGDGSPAIA 730

Query: 475  ---EQCRAGDDPGKTAEVSKTASSSSKNELKSGKSHNVSFRSINALIESCVKYSEAKTSV 531
               E CR GDD  K A+  K ASSSS NE K+GK H  SF S+NALIESCVKYSE    +
Sbjct: 731  PDEENCRPGDDQRKLADAPKAASSSSGNEHKTGKLHEGSFSSMNALIESCVKYSEVTAPM 790

Query: 532  VVGDDAGMNLLASVAAGEISKSDVVSPVGSPRRRTPVYEPFGNENDSRVKSFPGD----- 586
             VGDD GMNLLA+VAAGE+SKSD+ SP  SP+  T V E     ND R+KS PGD     
Sbjct: 791  SVGDDVGMNLLATVAAGEMSKSDMASPKHSPQTNTTVVEHHCTSNDGRLKSSPGDNLPRD 850

Query: 587  --QFSDGAGDAH-GKLGVDHTSWAKNGDSN-----QEKPAGDLTGRINTSPMDLQQSGDP 638
              Q  DG  D H  +  V  +S  K  +       QE P     GR  +S MD+Q+  +P
Sbjct: 851  RRQSVDGVDDEHENRDSVIGSSLPKITEDKIISCLQEIPTEVRNGRSISSNMDVQKIVEP 910

Query: 639  CQENIENSNKIVMTKGTPDCAGKNPEEDKAGV-------RVDT--NGTSDDKQRSSASLS 689
              E+   S +I+          K  E+   G        + DT  +G  D K+   + L 
Sbjct: 911  DLESNVKSEEILPATPVARSPRKTVEKTSMGADKATWEGKPDTKSDGICDTKENVDSCLR 970

Query: 690  QEDKVSELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLKCFEQTEQKPPLIATHPENV 749
             E+K  +         V+GSL  PS+E   +  K   + LK   Q +QKPP +  H    
Sbjct: 971  SENKFDDAGLEGGNEPVEGSLPCPSMEVDGQEMKPMNDELKIPAQADQKPPAV-VHSVFA 1029

Query: 750  KGADGELLHESGPGEDMASK-NIDEVKDEMVDEVDSKSNVNHSEEQKSDWKSNASMGHDL 808
            KG   + L+ S   +D AS     EVK E  DE D +S     E    +           
Sbjct: 1030 KGTVVDGLNPSPSDKDKASDIGGGEVKAEKADETDCRSQPTGKESTAPEII--------- 1080

Query: 809  WAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEAS-TALGVQETDYHVKTEAPK 867
                 V SA +  KGE +EE+LE    KEQ    S P  A  + + VQE +  V++   K
Sbjct: 1081 -----VGSAVTYKKGESIEESLECSHSKEQ--HSSVPAVAKVSVISVQEAEQEVRSSGSK 1133

Query: 868  LTASGGDKAQESTPATIDASS-SAARVSDAEAKVEFDLNEGFDGDEGKYGESSTLTGPAC 926
            L  S   +A+EST    DA+S SAA  SD EAKVEFDLNEGF+ D+G+YGE S L  P C
Sbjct: 1134 LIGSDAGEAEESTSGAGDAASLSAAGGSDIEAKVEFDLNEGFNADDGRYGEMSNLKAPEC 1193

Query: 927  SGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPEDLLRSKGALGWKGSAATSAF 986
            S ++Q LINPLPLP+SS +  LPASITVA+AAK PFVPPEDLL+++G LGWKGSAATSAF
Sbjct: 1194 STAIQ-LINPLPLPVSSASTGLPASITVASAAKRPFVPPEDLLKNRGELGWKGSAATSAF 1252

Query: 987  RPAEPRKILEMPLGVTNISVPDSTSGKLSRSLLDIDLNVPDERVLEDLASRSSAQDIVAA 1046
            RPAEPRK LE   G +   +  +   K SR  LD DLNVPDER+LED+ASR S    V+ 
Sbjct: 1253 RPAEPRKTLETSAGTSTFLLDAAAVIKPSRPPLDFDLNVPDERILEDMASRGSVHGTVSV 1312

Query: 1047 SDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFIDISNYSTSNGNKTDVLVQ-TGTS 1105
            ++L+NNL+    E++ S  VRGSGGLDLDLNR EE  D+ N+ TSNG + D  +Q   +S
Sbjct: 1313 ANLSNNLNLQHDEIVVSEPVRGSGGLDLDLNRVEEPNDVGNHLTSNGRRIDAHLQGVKSS 1372

Query: 1106 SGGLSNGEVNVCRDFDLNDGPV-DDMNAEPTVFHQHPRN-VQAQAPISGLRISNAETGNF 1163
            SG + NGE  V RDFDLNDGP+ D++NAE + F QH RN   +Q  +SGLR++N E GNF
Sbjct: 1373 SGAVLNGESTVRRDFDLNDGPLLDEVNAEVSPFSQHIRNNTPSQPSVSGLRLNNTEMGNF 1432

Query: 1164 SSWLPRGNTYSTITVPSVLPDRGEQPFPFA-PGVHQRMLAPSTSGSPFSPDVFRGPVLSS 1222
            SSW  + N+Y  + + S+LP+RGEQPFP   PG  QR+L PS S +PF+PDV+RGPVLSS
Sbjct: 1433 SSWFSQVNSYPAVAIQSILPERGEQPFPMVTPGGPQRILPPSGS-TPFNPDVYRGPVLSS 1491

Query: 1223 SPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTYVDSSSSGRLCFPAVNSQLMGPAGA 1282
            +PAVPFP++PFQYPVFPFG++ PLPSATFS GS+TYVDSSS GRLCFPAV+SQ++ PAGA
Sbjct: 1492 APAVPFPASPFQYPVFPFGTNLPLPSATFSGGSSTYVDSSSGGRLCFPAVHSQVLAPAGA 1551

Query: 1283 VPSHFTRPYVVSISDGSNSASAESSLKWGRQVLDLNAGPGVPDIEGRNETPPLVPRQLSV 1342
            VPSH+TRP+VVS+ D SN++ +ESS KW RQ LDLNAGP  PD+EG++ETP L  RQLSV
Sbjct: 1552 VPSHYTRPFVVSLQDNSNNSGSESSRKWVRQGLDLNAGPLGPDMEGKDETPSLASRQLSV 1611

Query: 1343 AGAQVLLEDQARMYQMAGGH-LKRREPEGGWDGYKRPSWH 1381
            A AQ  +E+Q+RMYQ+AGG  LKR+EP+ GW+ YK+ SW 
Sbjct: 1612 ANAQAFVEEQSRMYQVAGGGILKRKEPDNGWESYKQSSWQ 1651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491606|ref|XP_003634295.1| PREDICTED: uncharacterized protein LOC100248456 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540753|ref|XP_002511441.1| DNA binding protein, putative [Ricinus communis] gi|223550556|gb|EEF52043.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147817646|emb|CAN60153.1| hypothetical protein VITISV_021504 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507216|ref|XP_003522365.1| PREDICTED: uncharacterized protein LOC100780436 [Glycine max] Back     alignment and taxonomy information
>gi|356518993|ref|XP_003528159.1| PREDICTED: uncharacterized protein LOC100788512 [Glycine max] Back     alignment and taxonomy information
>gi|449441029|ref|XP_004138286.1| PREDICTED: uncharacterized protein LOC101210258 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526349|ref|XP_004170176.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224819 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297819422|ref|XP_002877594.1| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata] gi|297323432|gb|EFH53853.1| hypothetical protein ARALYDRAFT_485166 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186510768|ref|NP_190388.2| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|186510770|ref|NP_850669.2| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|332644839|gb|AEE78360.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] gi|332644840|gb|AEE78361.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1381
TAIR|locus:20979151613 SUO "'shuttle' in chinese" [Ar 0.736 0.630 0.386 5.9e-276
TAIR|locus:20979251611 AT3G48060 [Arabidopsis thalian 0.635 0.544 0.412 4.5e-165
TAIR|locus:21359071000 AT4G24200 [Arabidopsis thalian 0.220 0.305 0.262 2.9e-08
FB|FBgn0036203 1514 Muc68D "Mucin 68D" [Drosophila 0.680 0.620 0.195 2.8e-05
UNIPROTKB|Q939N5 3072 gspB "Platelet binding protein 0.645 0.290 0.158 4.8e-05
TAIR|locus:2097915 SUO "'shuttle' in chinese" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1603 (569.3 bits), Expect = 5.9e-276, Sum P(3) = 5.9e-276
 Identities = 419/1083 (38%), Positives = 588/1083 (54%)

Query:   332 HAKTGGFSRKEDARSSTAGSMTVNKISGGSSWP-RKISQW-LSHTALSGVQMDHGSSRNS 389
             H K+    +   + +S  G+      S   + P  KISQ  L+      V +  GS  N 
Sbjct:   562 HRKSNNVFQGSSSSASPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLTEGSG-NK 620

Query:   390 SSHKNPGSEKLSQSSLTCEKVVDMSVVEGNSHKLI--VK---IPNQGRSPAQSAYAVSLK 444
                K P   +    S++   + D + V       +  VK     N GR    S Y  ++ 
Sbjct:   621 LIVKLPNRGRSPAQSVSGGSLEDPAPVNSRVSSPVHAVKQELCDNNGREKNHS-YRPNVS 679

Query:   445 EPSVMNSRASSPVPLDKHDRFDRNFKEKSDEQCRAGDDPGKTAEVSKTASSSSK------ 498
               SV+N+ +     L   D    + +E +     AGD+ G   + S  AS + K      
Sbjct:   680 --SVLNAESWQSNELK--DILTGS-QEAAGSPLVAGDERGGDLKDSDKASGNVKGTSSLG 734

Query:   499 NELKSGKSHNVSFRSINALIESCVKYSEAKTSVVVGDDAGMNLLASVAAGEISKSDVVSP 558
             NE KSG+ H  +  S+NALIESCV+YSE   S+   DD GMNLLASVAA E+SKS V SP
Sbjct:   735 NEFKSGERHGGTLSSMNALIESCVRYSETNASLAGSDDVGMNLLASVAADEMSKSPVASP 794

Query:   559 VGSPRRRTPVYEPFGNENDSRVKS---FPGDQFSDGAGDAHGKLGVDHTSWAKN---GDS 612
               S    + + E     N++++ +    P +Q          + G  H S +      + 
Sbjct:   795 SVSQPPNSVMNENSTVGNNTKLMASDGLPHEQHQAVCTSVSTEQGEQHVSSSGTQLESEI 854

Query:   613 NQEKPAGDLTGRINTSPMDLQQSGDPCQENIENSNKIVMTKGTPDCAGKNP--EEDKAGV 670
               E   GD     N+   DLQ+  D C E+ +NS+ +V +   P  A K     +  +G 
Sbjct:   855 KNESKTGDRDKSSNSDTEDLQRLVDQCLESNDNSDGVVASPALPTKAVKEKILNDSDSGE 914

Query:   671 RVDTNGTSDDKQRSSASLSQEDKVSELNQGVECNVVDGSLSHPSLEFHCENKKTACEGLK 730
               D    +D K  +  +     +V+  +   EC  V   +   ++E      +T  EG+ 
Sbjct:   915 LKDIK--TDVKSEADCTSDSTKRVAS-SMLTECRDVSKKVDSVAVE------QTPLEGVD 965

Query:   731 CFEQTEQKPPLIATHPENVKGADGELLHESGPGEDMASKNIXXXXXXXXXXXXSKSNVNH 790
               ++ E+KPP  A   E VK  + ++   SG   DM + +I              ++++ 
Sbjct:   966 D-DKKEEKPPT-ALSSELVKKVEEDVPVSSGISRDMDAVSIGRPITEMVNNVAF-NHMDQ 1022

Query:   791 SEEQKSDWKSNASMGHDLWAVSHVSSAHSEDKGEHVEENLEGKEVKEQCFADSAPLEAST 850
              + +K     + S+G      + + S+ ++ K E VE NLE  EVKE+     + L A+ 
Sbjct:  1023 KDVKKIKQDCDTSVGAIKDTSAGLDSSVTKGKVEPVEGNLENSEVKERY----SGLRATP 1078

Query:   851 ALGVQETDYHVKTEAPKLTASGGDKAQESTPATIDXXXXXXXXXXXX---XKVEFDLNEG 907
              L  +E +   +   PK + + GD+A E T A  D                +VEFDLNEG
Sbjct:  1079 GLSPKEAEDLERPNGPKTSDADGDEAGECTSAARDASSVSAAASAGSEMDARVEFDLNEG 1138

Query:   908 FDGDEGKYGESSTLTGPA-CSGSVQQLINPLPLPISSVTNSLPASITVAAAAKGPFVPPE 966
             FDGD+ K+G+S+  +G    + +  Q +  LP P++ V++   ASITVAAAAKGPFVPPE
Sbjct:  1139 FDGDDAKHGDSNNFSGSVFLTPTPLQPVKTLPFPVAPVSSGTRASITVAAAAKGPFVPPE 1198

Query:   967 DLLRSKGALGWKGSAATSAFRPAEPRKILEMPLGVTNISVPD-STS-GKLSRSLLDIDLN 1024
             DLLR+KGA+GW+GSAATSAFRPAEPRK  ++ L + N S  D STS GK +R+ LD DLN
Sbjct:  1199 DLLRNKGAVGWRGSAATSAFRPAEPRKPQDVLLSINNTSTSDASTSAGKQTRTFLDFDLN 1258

Query:  1025 VPDERVLEDLASRSSAQDIVAASDLTNNLDGSRCEVMGSTSVRGSGGLDLDLNRAEEFID 1084
             VPDERVLEDLAS+ S       SD+TN+ D  R  VMGS     SGGLDLDLN+ ++  D
Sbjct:  1259 VPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSGVMGSALDHSSGGLDLDLNKVDDSTD 1318

Query:  1085 ISNYSTSNGNKTDVLVQTGT--SSGGLSNGEVNVCRDFDLNDGPV-DDMNAEPT-VFHQH 1140
             + +Y+ ++ ++ D   Q     S+GG         RDFDLNDGPV DD   EP+ V +QH
Sbjct:  1319 MISYTMNSSHRLDSSFQQVKLPSTGGR--------RDFDLNDGPVGDDAAVEPSMVLNQH 1370

Query:  1141 PRN-VQAQAPISGLRISNAETGNFSSWLPRGNTYSTITVPSVLPDRGEQPFPF-APGVHQ 1198
              R+ + +Q  +SG+R++     +FS+W P  N YS +++P ++P+RG+QPFP  A    Q
Sbjct:  1371 SRSGLPSQPSLSGIRVNGENMASFSTWFPAANAYSAVSMPPIMPERGDQPFPMIATRGPQ 1430

Query:  1199 RMLAPSTSGSPFSPDVFRGPVLSSSPAVPFPSTPFQYPVFPFGSSFPLPSATFSVGSTTY 1258
             RML P+T  S F+P+ +RGPVLSSSPA+PF ST FQYPVFPFG+SFP+ SA F   ST +
Sbjct:  1431 RMLGPTTGVSSFTPEGYRGPVLSSSPAMPFQSTTFQYPVFPFGNSFPVTSANFPGASTAH 1490

Query:  1259 VDSSSSGRLCFPAVNSQLMGPAGAVPSHFTRPYVVXX-XXXXXXXXXXXXLKWGRQVLDL 1317
             +DSSSSGR CFP VNSQ++GP   VPS++ RPY+V                KW R  LDL
Sbjct:  1491 MDSSSSGRACFPGVNSQILGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNGAKWFRSGLDL 1550

Query:  1318 NAGPGVPDIEGRNETPPLVPRQLSVAGAQVLLEDQARMYQMAGGHLKRREPEGGWDGYKR 1377
             N+GPG  + EGR+E+  LV RQLS + +  L EDQARMYQM+GG LKR+EPEGGWDGY++
Sbjct:  1551 NSGPGGHETEGRDEST-LVARQLSSSASLPLKEDQARMYQMSGGVLKRKEPEGGWDGYRQ 1609

Query:  1378 PSW 1380
              SW
Sbjct:  1610 SSW 1612
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=IEA;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA
GO:0031053 "primary miRNA processing" evidence=IMP
GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA
TAIR|locus:2097925 AT3G48060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135907 AT4G24200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q939N5 gspB "Platelet binding protein GspB" [Streptococcus gordonii (taxid:1302)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1381
smart0050975 smart00509, TFS2N, Domain in the N-terminus of tra 9e-13
cd0018376 cd00183, TFIIS_I, N-terminal domain (domain I) of 9e-10
pfam0871151 pfam08711, Med26, TFIIS helical bundle-like domain 2e-09
pfam09726680 pfam09726, Macoilin, Transmembrane protein 7e-04
>gnl|CDD|197766 smart00509, TFS2N, Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information 
 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 126 LQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQ---MGNMFVNHLRTHK 182
           L    K      +N K+  + ++      L+ L KLP+ +  L+   +G   VN LR HK
Sbjct: 1   LLRAAKKLDKVANNGKEVSRCLD-----ILKKLKKLPITVDLLEETRIG-KKVNGLRKHK 54

Query: 183 NLEIQKKARSLVDTWKKRVEA 203
           N EI+K A+ L+ +WKK V +
Sbjct: 55  NEEIRKLAKKLIKSWKKLVYS 75

Length = 75
>gnl|CDD|238107 cd00183, TFIIS_I, N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1381
KOG1886464 consensus BAH domain proteins [Transcription] 99.55
smart0050975 TFS2N Domain in the N-terminus of transcription el 99.11
cd0018376 TFIIS_I N-terminal domain (domain I) of transcript 99.09
PF0871153 Med26: TFIIS helical bundle-like domain; InterPro: 98.9
TIGR01385299 TFSII transcription elongation factor S-II. This m 98.76
KOG1105296 consensus Transcription elongation factor TFIIS/Co 98.44
PLN029761713 amine oxidase 97.09
KOG1793417 consensus Uncharacterized conserved protein [Funct 95.14
PF11467106 LEDGF: Lens epithelium-derived growth factor (LEDG 89.17
>KOG1886 consensus BAH domain proteins [Transcription] Back     alignment and domain information 
Probab=99.55  E-value=2.7e-15  Score=173.28  Aligned_cols=251  Identities=17%  Similarity=0.020  Sum_probs=208.8

Q ss_pred             CcccccCCCCCCCCCCCCCccccCCCCCcccccc--------cCCCCcCcC----CCCCCcchhh------HHHHHhhhh
Q 000632            1 MHATMQQGGRSPKPLNGPTSTSQLKPSSDSVQNS--------VSSFPSQVK----DSGHGRSENV------LRSEISKIT   62 (1381)
Q Consensus         1 Mha~vQ~GGrSPk~lngptstq~lK~gsd~~qn~--------~sSf~sq~K----~sg~~r~~~~------lk~ei~~Lt   62 (1381)
                      ||...++..+...+++.+.-+|| |..+++.--+        -.+|---.+    +-......+.      .-+++.+-+
T Consensus       192 ~~~~~~p~~~~t~~~~~~~~~~~-~s~~~~~~r~ss~~~~~~~e~~~~~t~~~~~~k~~g~~~~~v~~~~~~~s~~~~~~  270 (464)
T KOG1886|consen  192 RGTLPDPKKVQTLNAAASKRSQQ-KSEISSLSRASSSVDGEILESFDLLTGRSDRDKVLGKLLEVVWQNSCSTSEAKPAG  270 (464)
T ss_pred             CCCCCCccccccccccccceecc-ccccccccccccccccccccCCCCCCCcccccccccccchhhccccccccccCCCc
Confidence            56778889999999888888887 5444411100        011111111    1111122222      234566677


Q ss_pred             ccCCccChhhHHHHHHHhccCcccccccccchhHHHHHHHhccchhhhhhhhhccChhhHHHHHHHHhccccCCCCCCCC
Q 000632           63 ENGGLVDFEGVEKFIQLMVPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFDEWLQEVHKGKIGDGSNPKD  142 (1381)
Q Consensus        63 ekgGL~~~e~V~kLV~LM~~~~~~kk~~l~~R~~la~vIaaTes~DcL~~FVql~GL~vLd~WLqea~kGk~g~~~sp~~  142 (1381)
                      ++|++..++.|..++.||+..-++.+.|+..+..++-+|..+=..+||-.|.+++|..+.++|+|+.|.+++.++..++.
T Consensus       271 ~~~~~~p~~~v~~~~~le~~s~~s~a~d~~~~~~~~~~l~~~~k~~~~l~~~~ln~~~~~~e~~~~l~~p~~p~~~~~~~  350 (464)
T KOG1886|consen  271 DQGSLWPNPSVSPCGALEQPSHASLAKDLESYLGLRETLVLLLKGQALLKPEPLNPGETKPEPKQELHPPSFPDGQSSPS  350 (464)
T ss_pred             ccccCCCCcccchhhhhhhhhhhhHhhhhhhhhhhhhHHHhhhcchhhhccccCCCcccCchhhhhccCCCCCCCccCcc
Confidence            88999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhHHHHHHHhhcCCcchhhhhhcCc--cccccccCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCCccccCCCC
Q 000632          143 GDKAIEEFPLVSLRALDKLPVNLHALQMGNM--FVNHLRTHKNLEIQKKARSLVDTWKKRVEAEMNAKSGSNQAVSGLAR  220 (1381)
Q Consensus       143 ~dk~vee~ll~LLrAL~kLPIdle~Lkst~I--tVn~LRkhkn~EVqk~Ak~LvdsWKk~V~aE~daKsgs~q~vsW~~k  220 (1381)
                      .++-+.++.+.|+.+|++++++++.+.-+++  -+++|+-|..+||-..++++++.|+.++..+|++|++++|.+.|+.|
T Consensus       351 ~~~~~~d~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~~~~~~~~~~~~~~~q~~~~~~k  430 (464)
T KOG1886|consen  351 SMKLNDDDYDGLCVGLELTAGSLYLYCGQEGLICAGHLPCPMLPEVKLSPVAAVHREGLLLAPSSVPKGTPFQHPPWPEK  430 (464)
T ss_pred             ccccCchhHHHHHHhhhhhccchhhhcccccceeccccCCCCCCCcCcccccccchhhhcccceeccCCCCccCCCChhh
Confidence            9999999999999999999999999999988  99999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCCCcchhhccccccccccccccccc
Q 000632          221 PRIPEVSHGGNRNSGSSSEIAIKSSSMQLSTSKTASVKL  259 (1381)
Q Consensus       221 ~~~~Evsh~gnr~sg~sse~~~KSsv~q~s~SK~~svK~  259 (1381)
                           -.|++ |++|++.| +++.....+.+.+.+++|.
T Consensus       431 -----~~~~~-ret~~~~e-a~~~~~~~~~a~~~~~~k~  462 (464)
T KOG1886|consen  431 -----RLCSP-RETGVNGE-AICGVLPLLVAHAGTTCKG  462 (464)
T ss_pred             -----cccCc-cccCCchh-cccCCchhhhhcccccccC
Confidence                 56755 99999999 6666556676777776664

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription Back     alignment and domain information
>TIGR01385 TFSII transcription elongation factor S-II Back     alignment and domain information
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription] Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>KOG1793 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1381
2xpp_A145 IWS1, ECU08_0440; transcription, elongation, histo 2e-13
3nfq_A170 Transcription factor IWS1; SPN1, RNA polymerase II 2e-13
1wjt_A103 Transcription elongation factor S-II protein 3; fo 2e-10
1pqv_S309 STP-alpha, transcription elongation factor S-II, D 5e-08
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145 Back     alignment and structure
 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 22/142 (15%)

Query: 71  EGVEKFIQLM-------VPDRNERKIDLVCRSMLAGVVAAADKFDCLSKFVQVKGLHVFD 123
           E      + M         +  E +        +  +             +    L    
Sbjct: 8   EISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIK 67

Query: 124 EWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNM--FVNHLRTH 181
            WL+ +    + +    K             L  L  + ++   L    +   V     +
Sbjct: 68  GWLEPLPDKSMPNIKIRKR-----------LLDVLKTMKIHKEHLVTSGVGKIVYFYSIN 116

Query: 182 KN--LEIQKKARSLVDTWKKRV 201
                E++  A++LV  W   V
Sbjct: 117 PKESKEVRASAKALVQKWTNEV 138
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170 Back     alignment and structure
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1 Length = 103 Back     alignment and structure
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1381
d1eo0a_77 a.48.3.1 (A:) Transcription elongation factor TFII 7e-12
d1wjta_103 a.48.3.1 (A:) Transcription elongation factor S-II 1e-11
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77 Back     information, alignment and structure

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 142 DGDKAIEEFPLVSLRALDK-LPVNLHALQMGN--MFVNHLRTHKNLEIQKKARSLVDTWK 198
           + +K+ +   L  L  LDK        L+     + VN  +   N+EI K  + ++ +WK
Sbjct: 14  EKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73

Query: 199 KRV 201
             +
Sbjct: 74  DAI 76
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1381
d1wjta_103 Transcription elongation factor S-II protein 3 {Mo 99.36
d1eo0a_77 Transcription elongation factor TFIIS N-domain {Ba 99.28
d2b4jc181 PC4 and SFRS1-interacting protein, PSIP1 {Human (H 95.4
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 91.98
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.9e-13  Score=96.11  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCC--CCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf             0439999999841655899999999930131489999975118762544621373--01012467-88999999999899
Q 000632          119 LHVFDEWLQEVHKGKIGDGSNPKDGDKAIEEFPLVSLRALDKLPVNLHALQMGNM--FVNHLRTH-KNLEIQKKARSLVD  195 (1381)
Q Consensus       119 L~vLd~WLqea~kGk~g~~~~p~~~dk~vee~ll~LLrAL~kLPIdle~Lkst~I--tVn~LRkh-kn~EIqk~Ak~Lvd  195 (1381)
                      +.-+..||..+...+.             .+.++++|+.|+.+||++++|+.|+|  +||.||+| .+.+|+++|+.||+
T Consensus        14 i~~i~k~L~~~~~~~~-------------~~~vl~~L~~L~~~~it~e~L~~T~IGk~Vn~LrK~~~~~~v~~lAk~Lv~   80 (103)
T d1wjta_          14 LLRIAKKLEKMVSRKK-------------TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIK   80 (103)
T ss_dssp             HHHHHHHHHHHHHTTC-------------CSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9999999999873589-------------999999999987499879999857801969998846997899999999999


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             97886554332047998
Q 000632          196 TWKKRVEAEMNAKSGSN  212 (1381)
Q Consensus       196 sWKk~V~aE~~aKsgs~  212 (1381)
                      .||++|+.+...++...
T Consensus        81 ~WK~~v~~~~~~~~~~~   97 (103)
T d1wjta_          81 NWKRLLDSPRTTKGERE   97 (103)
T ss_dssp             HHHHHTCCSCCCCCCSC
T ss_pred             HHHHHHHHHCCCCCCCC
T ss_conf             99999874026776677
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure