Query 000633
Match_columns 1380
No_of_seqs 188 out of 511
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 18:04:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000633.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_403-407//hhsearch_pdb/000633hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fu6_A PC4 and SFRS1-interacti 1.0 1 1 205.8 3.4 104 1-107 1-105 (153)
2 2daq_A WHSC1L1 protein, isofor 1.0 1 1 174.9 6.8 98 19-117 6-108 (110)
3 2l89_A PWWP domain-containing 1.0 1 1 174.3 3.1 96 18-113 2-102 (108)
4 3qby_A Hepatoma-derived growth 1.0 1 1 173.2 7.6 85 19-106 3-87 (94)
5 3llr_A DNA (cytosine-5)-methyl 1.0 1 1 172.5 6.6 93 17-110 12-105 (154)
6 1ri0_A Hepatoma-derived growth 1.0 1 1 172.2 6.6 86 18-106 16-101 (110)
7 1khc_A DNA cytosine-5 methyltr 1.0 1 1 167.6 6.3 93 18-111 8-101 (147)
8 2gfu_A DNA mismatch repair pro 1.0 1 1 165.8 4.6 99 17-115 18-123 (134)
9 1h3z_A Hypothetical 62.8 kDa p 1.0 1 1 162.8 7.5 92 19-110 4-102 (109)
10 3pfs_A Bromodomain and PHD fin 1.0 1 1 145.4 7.2 90 19-108 34-153 (158)
No 1
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=205.84 Aligned_cols=104 Identities=30% Similarity=0.540 Sum_probs=89.5
Q ss_pred CCCCCCCCCHHH-HHHHHHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCC
Q ss_conf 984211341167-8888730798769799992178988971562989878788897599999379986640279753462
Q 000633 1 MAPSRRKGASKA-AAAAAARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFT 79 (1380)
Q Consensus 1 MaP~r~kgg~ka-aA~aaa~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~Ka~~kky~V~FFGThEyAWV~pkdLkPFs 79 (1380)
|||.|+|.+++. ...+...+.|++||||||||+|||||||+|+++.....+...++|+|+|||+++||||..++|++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~awv~~~~l~~f~ 80 (153)
T 4fu6_A 1 MHHHHHHSSGRENLYFQGMTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 80 (153)
T ss_dssp ------------CTTTTCSGGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCEEEECGGGEEEHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCEEEECHHHCCCHH
T ss_conf 97534466532367776414689999999882799799997971722421589889898896689986875787734757
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 6789766430479807899999999999
Q 000633 80 EEKKQSLLTKRQGRGADFVRAVQEIIDS 107 (1380)
Q Consensus 80 E~keesfl~KrkgK~K~FkeALeEAee~ 107 (1380)
+++.. |.. +.|.+.|++||+||++.
T Consensus 81 e~~~~-~~k--~~k~k~f~~Av~Eie~~ 105 (153)
T 4fu6_A 81 ENKEK-YGK--PNKRKGFNEGLWEIDNN 105 (153)
T ss_dssp HHHHH-HCS--CCSSTTHHHHHHHHHHC
T ss_pred HHHHH-HHC--CCCHHHHHHHHHHHHHC
T ss_conf 67888-743--10469999999999977
No 2
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=174.90 Aligned_cols=98 Identities=20% Similarity=0.407 Sum_probs=82.2
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-----CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 07987697999921789889715629898787-----8889759999937998664027975346267897664304798
Q 000633 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGR 93 (1380)
Q Consensus 19 ~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~-----Ka~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~KrkgK 93 (1380)
.+.|.+||||||||+|||||||+|+++...+. +...+.|+|+|||+++||||..++|++|.++... +....+.+
T Consensus 6 g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~~-~~~~~~~~ 84 (110)
T 2daq_A 6 SGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKS-FAEGQTSI 84 (110)
T ss_dssp CCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCCS-SSCSSCCC
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHCCCCCCCEEEEEECCCCEEEECHHHCCCCCHHHHH-HHHHCCCC
T ss_conf 88787998999980798999655389456987776416789838999956898899868987273002477-76624214
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 078999999999999998510134
Q 000633 94 GADFVRAVQEIIDSYEKLKKQDQV 117 (1380)
Q Consensus 94 ~K~FkeALeEAee~~E~iK~Qeqa 117 (1380)
.+.|++||+||++.++.++.|.++
T Consensus 85 ~k~f~~Al~eA~~~~~~~~~~r~~ 108 (110)
T 2daq_A 85 NKTFKKALEEAAKRFQELKASGPS 108 (110)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 399999999999999998753112
No 3
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=174.34 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=79.8
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC---C--CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 307987697999921789889715629898787---8--88975999993799866402797534626789766430479
Q 000633 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY---S--ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQG 92 (1380)
Q Consensus 18 a~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~---K--a~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~Krkg 92 (1380)
+...|++||||||||+|||||||+|+++...+. + ...+.|+|+|||+++||||..++|++|.++....|+.++++
T Consensus 2 ~~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~k~ 81 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSEIAKFLGSSKR 81 (108)
T ss_dssp CSCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHHHHHHHHHCSSS
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEECHHHCEECCHHHHHHHHHCCCC
T ss_conf 87756689999997378588866754745384877602689986999987899789986212446788899998760477
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 807899999999999999851
Q 000633 93 RGADFVRAVQEIIDSYEKLKK 113 (1380)
Q Consensus 93 K~K~FkeALeEAee~~E~iK~ 113 (1380)
|.+.|++||++|.++..+...
T Consensus 82 k~k~l~~Aye~A~~~~~l~~f 102 (108)
T 2l89_A 82 KSKELIEAYEASKTPPDLKEE 102 (108)
T ss_dssp CCHHHHHHHHHHTCGGGTSSC
T ss_pred CCHHHHHHHHHHCCCCCHHHH
T ss_conf 879999999997058878999
No 4
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=1.00 E-value=1 Score=173.18 Aligned_cols=85 Identities=32% Similarity=0.571 Sum_probs=73.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 07987697999921789889715629898787888975999993799866402797534626789766430479807899
Q 000633 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGADFV 98 (1380)
Q Consensus 19 ~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~Ka~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~KrkgK~K~Fk 98 (1380)
..+|++||||||||+|||||||+|+++.....+...++|+|+||||++||||..++|++|.+++.. |.. ..|++.|+
T Consensus 3 p~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~~-~~k--~~k~k~F~ 79 (94)
T 3qby_A 3 PHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDK-YGK--PNKRKGFN 79 (94)
T ss_dssp CCCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHHH-HCS--CCSSTTHH
T ss_pred CCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEECHHHEEEHHHHHHH-HCC--CCCHHHHH
T ss_conf 873766899999557879899798524301546789889999973898336846675677887998-746--74679999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000633 99 RAVQEIID 106 (1380)
Q Consensus 99 eALeEAee 106 (1380)
+||+||++
T Consensus 80 ~Al~Eien 87 (94)
T 3qby_A 80 EGLWEIQN 87 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999721
No 5
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=1.00 E-value=1 Score=172.54 Aligned_cols=93 Identities=17% Similarity=0.305 Sum_probs=75.7
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 7307987697999921789889715629898787-888975999993799866402797534626789766430479807
Q 000633 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGA 95 (1380)
Q Consensus 17 aa~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~-Ka~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~KrkgK~K 95 (1380)
.+.+.|++||||||||+|||||||+|+++..... +...++|+|+|||+++||||.+++|++|.++++. |...++.|.+
T Consensus 12 ~dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~~e~-f~~~~~~K~~ 90 (154)
T 3llr_A 12 EDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSA-FHQATYNKQP 90 (154)
T ss_dssp CSSCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEGGGHHHH-CCHHHHHHCH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHHH-HHHHHCCCHH
T ss_conf 568988668889996688887997874310102336889979999957997799768987463212899-8565024639
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999999999
Q 000633 96 DFVRAVQEIIDSYEK 110 (1380)
Q Consensus 96 ~FkeALeEAee~~E~ 110 (1380)
.|++||+||++.+..
T Consensus 91 ~fr~AV~eAle~a~~ 105 (154)
T 3llr_A 91 MYRKAIYEVLQVASS 105 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 6
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=172.23 Aligned_cols=86 Identities=35% Similarity=0.643 Sum_probs=73.3
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 30798769799992178988971562989878788897599999379986640279753462678976643047980789
Q 000633 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGADF 97 (1380)
Q Consensus 18 a~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~Ka~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~KrkgK~K~F 97 (1380)
....|++||||||||+|||||||+|+++.....+...+.|+|+||||++||||..++|++|.+++. .|..+ .|++.|
T Consensus 16 ~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~-k~~~~--~K~k~f 92 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKE-KFGKP--NKRKGF 92 (110)
T ss_dssp CSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHHHH-HCCCC--CCCHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHH-HHCCC--CCCHHH
T ss_conf 567798899999976897988999832557654789997999992489879987888232156478-87454--263999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 000633 98 VRAVQEIID 106 (1380)
Q Consensus 98 keALeEAee 106 (1380)
++||+||++
T Consensus 93 ~~Al~Eie~ 101 (110)
T 1ri0_A 93 SEGLWEIEN 101 (110)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 999999986
No 7
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=1.00 E-value=1 Score=167.62 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=74.6
Q ss_pred HCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCC-CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 3079876979999217898897156298987878-889759999937998664027975346267897664304798078
Q 000633 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYS-ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGAD 96 (1380)
Q Consensus 18 a~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~K-a~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~KrkgK~K~ 96 (1380)
....|++||||||||+|||||||+|+++.....+ ...+.|+|+|||+++||||.+++|++|.+++. .|..++..|++.
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~~~e-~f~~~~~~K~~~ 86 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQ-HFNLATFNKLVS 86 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHH-HCCHHHHHHCHH
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEECCCHHHHCCCCCCCEEEEEEECCCCEEEECHHHCCCCHHHHH-HHHHHCCCCHHH
T ss_conf 8866767999998357738899785364011103577881899994699889976898813447899-876403110789
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q 000633 97 FVRAVQEIIDSYEKL 111 (1380)
Q Consensus 97 FkeALeEAee~~E~i 111 (1380)
|++||+||++.....
T Consensus 87 f~kAv~eA~e~A~~r 101 (147)
T 1khc_A 87 YRKAMYHTLEKARVR 101 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 8
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=165.82 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=77.5
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC----CCCCCEEEEEEECCC-CEEEECCCCCCCCCHHHHHHHHHH--
Q ss_conf 7307987697999921789889715629898787----888975999993799-866402797534626789766430--
Q 000633 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY----SADWKKVLVFFFGTQ-QIAFCNPADVEAFTEEKKQSLLTK-- 89 (1380)
Q Consensus 17 aa~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~----Ka~~kky~V~FFGTh-EyAWV~pkdLkPFsE~keesfl~K-- 89 (1380)
.....|++||||||||+|||||||+|+++..... +...+.|+|+|||++ +||||..++|++|.++....+..+
T Consensus 18 ~~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~~~~k~~~ 97 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGH 97 (134)
T ss_dssp CSSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTSTTTSTTCT
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHCCC
T ss_conf 76777878989999626878778664131010455521478861899989999836887789820075346788763031
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47980789999999999999985101
Q 000633 90 RQGRGADFVRAVQEIIDSYEKLKKQD 115 (1380)
Q Consensus 90 rkgK~K~FkeALeEAee~~E~iK~Qe 115 (1380)
.+.+.+.|++||++|++.++..+++.
T Consensus 98 ~~~~~~~~~~Ai~~A~~a~~~~~eeR 123 (134)
T 2gfu_A 98 FYSAKPEILRAMQRADEALNKDKIKR 123 (134)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 00212999999999999862899999
No 9
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=162.83 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=75.8
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCCC-----CC--CCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 07987697999921789889715629898787-----88--897599999379986640279753462678976643047
Q 000633 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SA--DWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQ 91 (1380)
Q Consensus 19 ~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a~-----Ka--~~kky~V~FFGThEyAWV~pkdLkPFsE~keesfl~Krk 91 (1380)
...|++||||||||+|||||||+|+++..... ++ ..+.|+|+|||+++||||..++|++|.++....++.+.+
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~~ 83 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEKPK 83 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCHHHHHHHHHSCS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHEEECCCHHHHHHHHCCC
T ss_conf 65587899999985880889989716077767765037778999799998689998998889924178167788753446
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9807899999999999999
Q 000633 92 GRGADFVRAVQEIIDSYEK 110 (1380)
Q Consensus 92 gK~K~FkeALeEAee~~E~ 110 (1380)
.|++.+.+||++|.++.+.
T Consensus 84 ~k~k~l~~Ay~~A~~~~~~ 102 (109)
T 1h3z_A 84 PKTASLIKAYKMAQSTPDL 102 (109)
T ss_dssp SCCHHHHHHHHHHHHCCSG
T ss_pred CCCHHHHHHHHHHHCCCCH
T ss_conf 3779999999998226987
No 10
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=1.00 E-value=1 Score=145.40 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=64.0
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEECCCCCC-------------C------------CCCCCEEEEEEECC-CCEEEECC
Q ss_conf 0798769799992178988971562989878-------------7------------88897599999379-98664027
Q 000633 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWG-------------Y------------SADWKKVLVFFFGT-QQIAFCNP 72 (1380)
Q Consensus 19 ~~~FkpGDLVWAKLKGYPwWPArIvdPe~~a-------------~------------Ka~~kky~V~FFGT-hEyAWV~p 72 (1380)
...|++||||||||+|||||||+|++|..-. . +...+.|+|+|||+ ++|+||..
T Consensus 34 ~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~~ 113 (158)
T 3pfs_A 34 RGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPR 113 (158)
T ss_dssp CSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEEG
T ss_pred CCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECC
T ss_conf 77788898889864777999878718888664522356536789099985220003567998799997689993686361
Q ss_pred CCCCCCCHHHHHHHHHHCCCCH----HHHHHHHHHHHHHH
Q ss_conf 9753462678976643047980----78999999999999
Q 000633 73 ADVEAFTEEKKQSLLTKRQGRG----ADFVRAVQEIIDSY 108 (1380)
Q Consensus 73 kdLkPFsE~keesfl~KrkgK~----K~FkeALeEAee~~ 108 (1380)
++|++|........+.-..+|+ +.+++||+.|.+..
T Consensus 114 ~~L~Pl~~d~~~D~~kl~e~Kks~~rKAl~~AYe~A~~~~ 153 (158)
T 3pfs_A 114 DKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHL 153 (158)
T ss_dssp GGEEECSSCHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3573457716652444213787899999999999999976
Done!