BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000634
(1380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
Query: 508 FNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEF 567
FN+ K+G++YL+ ++ P+ +A F + LD +G++LGD D+F+ +V+ +
Sbjct: 29 FNKKPKRGIQYLQEQGMLGTTPED--IAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAY 86
Query: 568 TETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFD-QQTSEIFVAKDSVYI 626
+ +F+G +ALR +LE FRLPGE+QKI R++E F+ R+ + Q +F + D+ Y+
Sbjct: 87 VDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYV 146
Query: 627 FCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISV 684
YS+IML TD H+PQVK KMT+E++I+ NRGIN KDLP EYLS +++ IA IS+
Sbjct: 147 LAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISM 204
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 4/193 (2%)
Query: 493 LRKAQKRKSLIAG-NHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGD 551
++ Q+ K + G FN D KKG+++L L+ + + +A F +GL+K IGD
Sbjct: 1 MKNMQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCED--IAQFLYKGEGLNKTAIGD 58
Query: 552 YLGDADEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFD 611
YLG+ DEF+IQVL F E EF + L ALR +L +FRLPGE+QKI R++EAF+ R+
Sbjct: 59 YLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC- 117
Query: 612 QQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLS 671
Q + +F + D+ Y+ +++IMLNT HNP VK K T E FI NRGIN G DLP E L
Sbjct: 118 QCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLR 177
Query: 672 ELFHSIASNAISV 684
L+ SI + +
Sbjct: 178 NLYESIKNEPFKI 190
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 3/188 (1%)
Query: 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDA 556
+ RK + FN D KKG+++L +L+ + P+ +A F +GL+K IGDYLG+
Sbjct: 12 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPE--EIARFLYKGEGLNKTAIGDYLGER 69
Query: 557 DEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE 616
+E ++ VL F + EF + L ALR +L +FRLPGE+QKI R++EAF+ R+
Sbjct: 70 EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPG- 128
Query: 617 IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHS 676
+F + D+ Y+ YS+IMLNTD HNP V+ KM E F+ NRGIN G DLP E L L+ S
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 677 IASNAISV 684
I + +
Sbjct: 189 IRNEPFKI 196
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 153 bits (386), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 508 FNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEF 567
FN D KKG+++L L+ + + +A F +GL+K IGDYLG+ DEF+IQVL F
Sbjct: 17 FNMDPKKGIQFLIENDLLKNTCED--IAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAF 74
Query: 568 TETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIF 627
E EF + L ALR +L +FRLPGE+QKI R++EAF+ R+ Q + +F + D+ Y+
Sbjct: 75 VELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC-QCNNGVFQSTDTCYVL 133
Query: 628 CYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISV 684
+++IMLNT HNP VK K T E FI NRGIN G DLP E L L+ SI + +
Sbjct: 134 SFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKI 190
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 3/188 (1%)
Query: 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDA 556
+ RK + FN D KKG+++L +L+ + P+ +A F +GL+K IGDYLG+
Sbjct: 12 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPE--EIARFLYKGEGLNKTAIGDYLGER 69
Query: 557 DEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE 616
+E ++ VL F + EF + L ALR +L +FRLPGE+QKI R++EAF+ R+
Sbjct: 70 EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG- 128
Query: 617 IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHS 676
+F + D+ Y+ YS+IMLNTD HNP V+ KM E F+ NRGIN G DLP E L L+ S
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 677 IASNAISV 684
I + +
Sbjct: 189 IRNEPFKI 196
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 128/217 (58%), Gaps = 11/217 (5%)
Query: 508 FNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEF 567
FN D KKG+++L L+ P+ +A F +GL+K +IGDYLG+ D+F+I+VL+ F
Sbjct: 25 FNMDPKKGIQFLIENDLLQSSPE--DVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAF 82
Query: 568 TETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIF 627
E EFA + L ALR +L +FRLPGE+QKI R++EAF+ R+ +F + D+ Y+
Sbjct: 83 VELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPG-VFQSTDTCYVL 141
Query: 628 CYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQ 687
+++IMLNT HN V+ K T E FI NRGIN G DLP E L L+ SI + +
Sbjct: 142 SFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPED 201
Query: 688 SGQIVD---MNPSR--W-IELINRSKTMLP--FILCD 716
G + NP R W ++L R KT FIL D
Sbjct: 202 DGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTD 238
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 115/188 (61%), Gaps = 3/188 (1%)
Query: 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDA 556
+ RK + FN D KKG+++L +L+ + P+ +A F +GL+K IGDYLG+
Sbjct: 12 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPE--EIARFLYKGEGLNKTAIGDYLGER 69
Query: 557 DEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE 616
+E ++ VL F + EF + L ALR +L +FRLPG++QKI R++EAF+ R+
Sbjct: 70 EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPG- 128
Query: 617 IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHS 676
+F + D+ Y+ YS+IMLNTD HNP V+ KM E F+ NRGIN G DLP E L L+ S
Sbjct: 129 VFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDS 188
Query: 677 IASNAISV 684
I + +
Sbjct: 189 IRNEPFKI 196
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 11/217 (5%)
Query: 508 FNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEF 567
FN D KKG+++L L+ P+ +A F +GL+K +IGDYLG+ D+F+I+VL+ F
Sbjct: 25 FNXDPKKGIQFLIENDLLQSSPE--DVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAF 82
Query: 568 TETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIF 627
E EFA + L ALR +L +FRLPGE+QKI R EAF+ R+ +F + D+ Y+
Sbjct: 83 VELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNPG-VFQSTDTCYVL 141
Query: 628 CYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQ 687
+++I LNT HN V+ K T E FI NRGIN G DLP E L L+ SI + +
Sbjct: 142 SFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYESIKNEPFKIPED 201
Query: 688 SGQIVD---MNPSR--W-IELINRSKTMLP--FILCD 716
G + NP R W ++L R KT FIL D
Sbjct: 202 DGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTD 238
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 3/188 (1%)
Query: 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDA 556
+ RK + FN D KKG+++L +L+ + P+ +A F +GL+K IGDYLG+
Sbjct: 10 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPE--EIARFLYKGEGLNKTAIGDYLGER 67
Query: 557 DEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE 616
+E ++ VL F + EF + L ALR +L +FRLPGE+QKI R++EAF+ R+
Sbjct: 68 EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG- 126
Query: 617 IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHS 676
+F + D+ Y+ +++IMLNT HNP V+ K E F+ NRGIN G DLP E L L+ S
Sbjct: 127 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 186
Query: 677 IASNAISV 684
I + +
Sbjct: 187 IRNEPFKI 194
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 11/181 (6%)
Query: 508 FNRDEKKGLEYLK----LCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQV 563
FN+ K+G+++L+ L V D +A F + LD +GD+LGD+ F+ +V
Sbjct: 20 FNKKPKRGIQFLQEQGXLGTSVED------IAQFLHQEERLDSTQVGDFLGDSARFNKEV 73
Query: 564 LKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFD-QQTSEIFVAKD 622
+ + +F +ALRT+LE FRLPGE+QKI R+ E F+ R+ + Q +F + D
Sbjct: 74 XYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASAD 133
Query: 623 SVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAI 682
+ Y+ YS+I L TD H+PQVK K T+E++I+ NRGIN KDLP EYLS ++ I I
Sbjct: 134 TAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEIEGKKI 193
Query: 683 S 683
+
Sbjct: 194 A 194
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 508 FNRDEKKGLEYLK-LCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKE 566
FN K G+ +K +C+ P+ + FF + + LD +GDYL + + QVLK
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKA 77
Query: 567 FTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYI 626
FT F G + LRT+L+TF+LPGE+QKI R++++FS +F QQ ++ D+ Y+
Sbjct: 78 FTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYF-QQNPDVVSNADAAYL 136
Query: 627 FCYSLIMLNTDQHNPQV--KKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIAS 679
+ IMLNTD HNP + K KMT + RN RG N G D ++L EL+ I +
Sbjct: 137 LAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKA 191
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 508 FNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEF 567
FN KKG++ L + + +F F L+K IG L D + +LKEF
Sbjct: 19 FNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKK--TSLLKEF 76
Query: 568 TETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE----------- 616
+ F+F G+ +D A+R L FRLPGESQ+I+RI+EAFS ++ Q+++
Sbjct: 77 IDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGK 136
Query: 617 -----------IFVA--KDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGK 663
I V DSV++ YS+IMLNTD HNPQVK MT +++ N RG GK
Sbjct: 137 NGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGK 196
Query: 664 DLPREYLSELFHSIASNAI 682
D PR YL +++ SI I
Sbjct: 197 DFPRWYLHKIYTSIKVKEI 215
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 98/175 (56%), Gaps = 4/175 (2%)
Query: 508 FNRDEKKGLEYLK-LCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKE 566
FN K G+ +K +C+ P+ + FF + + LD +GDYL + + QVLK
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKA 77
Query: 567 FTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYI 626
FT F G + LRT+L+TF+LPGE+QKI R++++FS +F QQ ++ D+ Y+
Sbjct: 78 FTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYF-QQNPDVVSNADAAYL 136
Query: 627 FCYSLIMLNTDQHNPQV--KKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIAS 679
+ I LNTD HNP + K K T + RN RG N G D ++L EL+ I +
Sbjct: 137 LAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKA 191
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 506 NHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLK 565
N FN KKG+ L ++ D F F ++K IG L D+ + +L
Sbjct: 32 NAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLN 89
Query: 566 EFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQT----------- 614
E+ F+F+G+ +D A+R L FRLPGESQ+I+RI+EAFS + + Q
Sbjct: 90 EYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAE 149
Query: 615 ---SEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLS 671
S + DSV+I YS+IMLNTD HNPQVK+ M+ E++ N +G KD P YL
Sbjct: 150 DDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLD 209
Query: 672 ELFHSIASNAI 682
++ SI I
Sbjct: 210 RVYCSIRDKEI 220
>pdb|3L4Q|C Chain C, Structural Insights Into Phosphoinositide 3-Kinase
Activation By The Influenza A Virus Ns1 Protein
pdb|3L4Q|D Chain D, Structural Insights Into Phosphoinositide 3-Kinase
Activation By The Influenza A Virus Ns1 Protein
Length = 170
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 561 IQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRIL 602
I+ E + FE G T + + + YLE FR G +++QRIL
Sbjct: 54 IEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRIL 95
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 561 IQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRIL 602
I+ E + FE G T + + YLE FR G +++QRIL
Sbjct: 55 IEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRIL 96
>pdb|3MTT|A Chain A, Crystal Structure Of Ish2 Domain Of Human P85beta,
Northeast Structural Genomics Consortium Target Hr5531c
Length = 187
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 561 IQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRIL 602
I+ E + FE G T + + YLE FR G +++QRIL
Sbjct: 50 IEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRIL 91
>pdb|2NQY|A Chain A, Crystal Structure Of Alkaline Thermophlic Xylanase From
Bacillus Sp. (Ncl 86-6-10) With Complex Xylotriose:
Xylotriose Cleaved To Xylobiose And Xylose
pdb|2NQY|B Chain B, Crystal Structure Of Alkaline Thermophlic Xylanase From
Bacillus Sp. (Ncl 86-6-10) With Complex Xylotriose:
Xylotriose Cleaved To Xylobiose And Xylose
Length = 206
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 850 FDISTTDAPSHSRAESGVVFPAYDPTSGNRRSSGMISRFTHFLSLDSPEDSISLGMN--- 906
+DI TD + + F Y T ++R+SG IS HF + + SLGMN
Sbjct: 122 YDIYETDRTNQPSIKGVATFSQYWSTRRSKRTSGTISVSNHFRAWE------SLGMNMGD 175
Query: 907 --EFEQNLKVIKQCQIGNIFSNS 927
E ++ + N++SN+
Sbjct: 176 MYEVALTVEGYQSSGSANVYSNT 198
>pdb|3SKV|A Chain A, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
Biosynthetic Pathway
pdb|3SKV|B Chain B, Salicylyl-Acyltransferase Ssfx3 From A Tetracycline
Biosynthetic Pathway
Length = 385
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 440 EGLVILIHNIAESIDKEGDTSPSGPYPVEITEYKPFWEEKPNDDSDTWVEY 490
+G V N+ + + P P + + Y PFW+E P DD T +Y
Sbjct: 261 DGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELPADDKPTVADY 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,336,303
Number of Sequences: 62578
Number of extensions: 1535386
Number of successful extensions: 3332
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3287
Number of HSP's gapped (non-prelim): 19
length of query: 1380
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1269
effective length of database: 8,027,179
effective search space: 10186490151
effective search space used: 10186490151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)