Query 000634
Match_columns 1380
No_of_seqs 387 out of 1099
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 20:57:23 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0928 Pattern-formation prot 100.0 2E-229 4E-234 2092.8 103.5 1286 26-1378 2-1367(1386)
2 PLN03076 ARF guanine nucleotid 100.0 2E-179 4E-184 1760.3 117.9 1218 86-1367 81-1510(1780)
3 KOG0929 Guanine nucleotide exc 100.0 2E-134 4E-139 1278.7 69.7 1157 83-1368 37-1320(1514)
4 COG5307 SEC7 domain proteins [ 100.0 7.7E-65 1.7E-69 642.1 36.4 910 286-1339 26-1010(1024)
5 KOG1848 Uncharacterized conser 100.0 2.1E-60 4.7E-65 585.8 58.3 1033 37-1372 15-1182(1610)
6 KOG0930 Guanine nucleotide exc 100.0 7.6E-50 1.7E-54 422.7 15.5 194 494-690 58-251 (395)
7 cd00171 Sec7 Sec7 domain; Doma 100.0 2.2E-48 4.7E-53 416.7 20.2 184 497-682 1-185 (185)
8 PF01369 Sec7: Sec7 domain; I 100.0 1.7E-48 3.6E-53 420.8 17.8 187 495-682 2-190 (190)
9 smart00222 Sec7 Sec7 domain. D 100.0 1.2E-47 2.6E-52 412.4 20.2 184 497-682 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 3.8E-46 8.3E-51 416.3 14.0 191 497-690 197-393 (627)
11 PF12783 Sec7_N: Guanine nucle 100.0 1.1E-29 2.3E-34 270.3 17.5 161 252-413 2-168 (168)
12 KOG0932 Guanine nucleotide exc 100.0 3E-28 6.6E-33 279.0 13.3 153 531-684 307-459 (774)
13 KOG1846 Uncharacterized conser 98.9 6.5E-07 1.4E-11 108.8 29.2 367 913-1294 843-1284(1777)
14 PF09324 DUF1981: Domain of un 98.8 3.5E-09 7.6E-14 99.8 4.5 71 1030-1105 14-86 (86)
15 PLN03076 ARF guanine nucleotid 93.7 17 0.00038 52.0 28.3 144 982-1131 1342-1514(1780)
16 KOG1824 TATA-binding protein-i 84.5 1.6E+02 0.0034 39.3 34.9 216 92-366 521-740 (1233)
17 PF02985 HEAT: HEAT repeat; I 78.0 3.4 7.4E-05 31.1 3.8 29 1197-1225 1-29 (31)
18 PF12348 CLASP_N: CLASP N term 77.5 1.2E+02 0.0026 33.7 17.8 105 286-394 22-126 (228)
19 KOG1848 Uncharacterized conser 76.2 3.4E+02 0.0073 38.0 23.6 37 1190-1226 1097-1133(1610)
20 PF12348 CLASP_N: CLASP N term 75.9 94 0.002 34.5 16.4 187 106-352 20-210 (228)
21 KOG2171 Karyopherin (importin) 74.9 2.6E+02 0.0055 38.3 21.5 257 91-393 159-420 (1075)
22 PTZ00429 beta-adaptin; Provisi 61.3 5.3E+02 0.012 34.5 35.7 123 290-425 272-397 (746)
23 PF10274 ParcG: Parkin co-regu 59.4 75 0.0016 34.6 10.4 86 79-175 26-111 (183)
24 PF01602 Adaptin_N: Adaptin N 56.9 4.9E+02 0.011 32.7 25.8 247 92-424 80-332 (526)
25 PF10508 Proteasom_PSMB: Prote 55.0 5.5E+02 0.012 32.6 24.7 263 64-393 90-368 (503)
26 KOG0166 Karyopherin (importin) 51.7 6.1E+02 0.013 32.2 21.1 59 1193-1257 318-377 (514)
27 KOG1059 Vesicle coat complex A 43.7 3.1E+02 0.0067 35.8 13.5 129 988-1130 145-310 (877)
28 PF11864 DUF3384: Domain of un 43.6 7.6E+02 0.017 31.0 18.6 139 927-1089 207-353 (464)
29 PF09324 DUF1981: Domain of un 42.4 1.2E+02 0.0025 28.9 7.7 52 959-1013 31-82 (86)
30 KOG1943 Beta-tubulin folding c 36.7 6.3E+02 0.014 34.6 15.2 165 1190-1367 675-868 (1133)
31 PF11640 TAN: Telomere-length 36.7 2.8E+02 0.0061 29.2 10.5 103 1207-1317 15-118 (155)
32 PF12783 Sec7_N: Guanine nucle 33.9 4.3E+02 0.0092 28.0 11.5 79 937-1018 10-101 (168)
33 KOG1525 Sister chromatid cohes 28.9 1.7E+03 0.037 31.8 18.1 60 1272-1342 272-331 (1266)
34 PF11864 DUF3384: Domain of un 28.0 1.3E+03 0.028 29.0 28.3 75 112-198 153-228 (464)
35 PF12830 Nipped-B_C: Sister ch 25.0 2.4E+02 0.0052 30.7 7.8 88 91-196 8-95 (187)
36 KOG1766 Enhancer of rudimentar 24.4 2.3E+02 0.0051 27.3 6.2 44 1273-1316 22-66 (104)
37 PF12719 Cnd3: Nuclear condens 24.4 1.7E+02 0.0037 34.3 7.0 77 1198-1289 66-144 (298)
38 KOG3490 Transcription elongati 24.3 38 0.00082 33.0 1.1 20 1353-1372 60-79 (111)
39 PF08767 CRM1_C: CRM1 C termin 24.0 1.3E+03 0.027 27.5 22.8 239 293-575 18-319 (319)
40 KOG2023 Nuclear transport rece 23.6 1.4E+03 0.031 29.9 14.4 209 970-1220 417-686 (885)
41 cd06571 Bac_DnaA_C C-terminal 23.3 2.7E+02 0.0059 26.5 6.9 59 503-567 7-66 (90)
42 cd00020 ARM Armadillo/beta-cat 23.3 4.6E+02 0.01 25.0 8.9 109 1198-1338 9-118 (120)
43 KOG2956 CLIP-associating prote 23.3 3.1E+02 0.0067 34.0 8.6 52 1198-1254 289-340 (516)
44 PF14500 MMS19_N: Dos2-interac 22.7 1.2E+03 0.026 26.9 16.4 141 1050-1231 95-242 (262)
45 cd03568 VHS_STAM VHS domain fa 22.2 7.4E+02 0.016 25.9 10.4 70 320-390 38-109 (144)
46 PF08299 Bac_DnaA_C: Bacterial 22.1 1.3E+02 0.0028 27.4 4.1 34 531-566 32-66 (70)
47 PF08167 RIX1: rRNA processing 21.9 9.8E+02 0.021 25.4 13.9 128 931-1074 19-151 (165)
48 PF12717 Cnd1: non-SMC mitotic 21.2 6.2E+02 0.013 27.2 10.0 111 1002-1127 1-113 (178)
49 PF12755 Vac14_Fab1_bd: Vacuol 20.8 2.3E+02 0.005 27.6 5.8 57 1050-1108 40-97 (97)
50 PRK06030 hypothetical protein; 20.7 2.9E+02 0.0063 28.3 6.7 59 502-567 30-90 (124)
51 smart00760 Bac_DnaA_C Bacteria 20.4 2E+02 0.0044 25.1 4.9 51 503-557 8-59 (60)
52 PF14631 FancD2: Fanconi anaem 20.2 1.9E+03 0.041 31.9 16.5 103 320-428 432-545 (1426)
No 1
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-229 Score=2092.76 Aligned_cols=1286 Identities=43% Similarity=0.709 Sum_probs=1156.8
Q ss_pred hhhhccchhHHHHHHHHHHHHHHhcCCCC--CCc-cccccccHHHHHHHHHHHHhcCCcCCCccCCcccchHHHHHHhcC
Q 000634 26 YKRKQLGLSCMLNTEVGSVLAVIRRPLDA--HYV-QEDTFESAVVQSLKSLRSLIFNPQQEWRTVDPSIYLSPFLDVVQS 102 (1380)
Q Consensus 26 ~~~~~~~~~~~~~~E~~~v~~~~rr~~r~--~~~-~~~~~~~~l~~~~~~Lr~~l~~~~~~~~~~~~~~~l~PFL~vi~s 102 (1380)
+|++....+||++.|+++++++||||.|| ++. ..+...+||+++|++||+.|.++ ++|+.+||.+||+|||+||+|
T Consensus 2 ~k~~~~~~~~~in~~vg~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~Lr~~ln~~-~~l~~idp~~~L~PFL~vI~s 80 (1386)
T KOG0928|consen 2 RKTSRYISQGMINILVGAVLAVFRRNDRWSVRSFTNLDTSSHSLLSSFKQLREVLNSL-ASLDTIDPLTYLSPFLEVIKS 80 (1386)
T ss_pred CcccchhhhhhhHHHHhHHHHHHHhccchhhccCCCCcccchHHHHHHHHHHHHhhch-hhhccCChHhHHhHHHHHHhc
Confidence 36677889999999999999999999999 433 56677899999999999988888 569999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHccCCCCCCCcChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHcccCccccCc
Q 000634 103 DDIPAAATGVALSAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTD 182 (1380)
Q Consensus 103 ~~~~~~it~~AL~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~~ll~~~~g~~l~~ 182 (1380)
++|+||||++||+||+||+++++|+++++|++.||+.+++||||||||+||+++||+|+|||||||++||.+|+|.+|+|
T Consensus 81 ~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSn 160 (1386)
T KOG0928|consen 81 DETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSN 160 (1386)
T ss_pred ccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccC-C------------------C------CC
Q 000634 183 EAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSG-E------------------G------SE 237 (1380)
Q Consensus 183 ~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~-~------------------~------~~ 237 (1380)
+.||++|+||||+|||+ ++|++||++|++||.+|++.||+|++.+++.-. + + .+
T Consensus 161 q~Ic~ivqTcl~v~~q~-~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~~~~~~~~~es~~~~~~~~~~i~~k~~en~e 239 (1386)
T KOG0928|consen 161 QIICDIVQTCLRVVCQS-RLSELLRKSAEHTMHDLTQLIFSRLKYIEPPYVNEMYINDESYQGNVLKDDFIGTKRVENGE 239 (1386)
T ss_pred hHHHHHHHHHHHHHHHH-hHHHHhhcchhhhHHHHHHHHHHhCccccccccchhhcchHhhhcccccccccCcccCCCCC
Confidence 99999999999999998 899999999999999999999999999883110 0 0 00
Q ss_pred CCC--C----Cc--------------c-----------ccCccCCCcchhhHHHHHHHHHhhcccccccCCCCCCCccch
Q 000634 238 SDT--E----DV--------------D-----------MDANLGSGYGIRSAVDIFHFLCSLLNVVELVEGEGSRTSDVD 286 (1380)
Q Consensus 238 ~~~--~----~~--------------~-----------~~~~~~~~~g~~~~~~lf~~Lc~L~~~~~~~~~~~~~~~~~~ 286 (1380)
.+. + ++ + ....+..+||+|+..++|++||+|+++... ..++++
T Consensus 240 ~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~~~~~ygip~~~~~~h~l~sl~~~~n~------~~~~es 313 (1386)
T KOG0928|consen 240 ISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAAMDENYGIPVMKDIFHFLLSLLNVTNT------VAHDES 313 (1386)
T ss_pred ccCcccccccccccccccccCCccccccccCChhhhhhHhhcccccCCCceeccchhhhhhhcccccc------ccchhh
Confidence 000 0 00 0 012356799999999999999999987432 467789
Q ss_pred hhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh-----ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000634 287 VQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYG-----ARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAF 361 (1380)
Q Consensus 287 ~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~-----~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~f 361 (1380)
+++++|.||++++|.+|+.|+.||.|+.+++|+++++++..+ .+..+.++++.+.++.+|+..+|.++|.|+|.|
T Consensus 314 ~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~ 393 (1386)
T KOG0928|consen 314 VRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAF 393 (1386)
T ss_pred hhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999 667788999999999999999999999999999
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHHHhcCchHHHHHhHhcCCCCCCccHHHHHHHHHHhhcCCCCCCCchhHHH--
Q 000634 362 FGFVVLRVAA--SGNSHQLQEVALEGIINFCRQPTFLIEVYVNYDCDPLCRNVIEEIGKLLCKHSFPVSGPLTSSQIQ-- 437 (1380)
Q Consensus 362 l~~l~~~i~~--~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~nYDCd~~~~nlfe~lv~~L~k~a~~~~~~~~~~~~l-- 437 (1380)
|+.+..++.. .++|+++||++||++..|||.|.|++++|+|||||++|+||||++++.|+|++||+++++++.+++
T Consensus 394 Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~l 473 (1386)
T KOG0928|consen 394 FSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILPL 473 (1386)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccch
Confidence 9999988876 556899999999999999999999999999999999999999999999999999999999988874
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCcccccCCCccCCCCCCCcchHHHHHHHHHHhhhHHHHHHhhcccChHhHHH
Q 000634 438 AFEGLVILIHNIAESIDKEGDTSPSGPYPVEITEYKPFWEEKPNDDSDTWVEYVRLRKAQKRKSLIAGNHFNRDEKKGLE 517 (1380)
Q Consensus 438 ~Le~l~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~Fn~~pk~gi~ 517 (1380)
|++++.+++..+.+.....+ -.++|..+++ .|+..+|.+| +|++++.|+++||++|||||+
T Consensus 474 ~l~~v~~l~e~~~~~l~~~d--------------~~ef~~~k~e----~~v~~iR~rk-~K~~li~gae~FNe~pkKGi~ 534 (1386)
T KOG0928|consen 474 DLEGVLGLAENMIDELQDSD--------------REEFWTDKCE----VWVLFIRSRK-RKRELILGAELFNEDPKKGIE 534 (1386)
T ss_pred HHHHHHHHHHHHHhhccccC--------------cCccccCCcc----hhhhhhccch-hhHHHHHHHHHhccChhhHHH
Confidence 55555555555554332211 1456665553 5676677666 799999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCCCCChHHHHHHHhccccCCCchhH
Q 000634 518 YLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQK 597 (1380)
Q Consensus 518 ~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~~~~~aLR~fl~~frlPgEaq~ 597 (1380)
||+++|+|+++.||..+|.|||+||||||++||+|||+++ |.+||++|+++|||+||++|+|||.||++||||||||+
T Consensus 535 fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k--~~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~ 612 (1386)
T KOG0928|consen 535 FLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPK--NVSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQK 612 (1386)
T ss_pred HHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcc--hHHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHH
Confidence 9999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHhhccCCCccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHh
Q 000634 598 IQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSI 677 (1380)
Q Consensus 598 Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~n~rg~~~g~d~~~~~L~~iY~~I 677 (1380)
|+|++|+||++||++|+|++|+++|+||+|+|||||||||+||||||++||++||+||+||+|+|+|||+|||.+||++|
T Consensus 613 IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SI 692 (1386)
T KOG0928|consen 613 IERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSI 692 (1386)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999777799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccCCCCcccCCChhHHHHHHHhhccCCcceeccccccchhhhhhhhhHhHHHHHHHHHhhcCcHHHHHHHHHHH
Q 000634 678 ASNAISVFGQSGQIVDMNPSRWIELINRSKTMLPFILCDFDRRLGRDMFASIAGPAVAALSAFFDHADEDDMLQECIEGL 757 (1380)
Q Consensus 678 ~~~~i~~~~~~~~~~~~~~~~w~~l~~~s~~~~~~~~~~~~~~~~~~mf~~~w~~~laals~~f~~~~d~~~~~~~l~g~ 757 (1380)
|.+||+||++|++..++.+++|..++.|++++.|++.+++...+|++||..+|||++||++++|+.+++++++++|++|+
T Consensus 693 k~~EIvmPee~hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~ 772 (1386)
T KOG0928|consen 693 KTNEIVMPEEHHGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGI 772 (1386)
T ss_pred hhcceecccccCCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHH
Confidence 99999999998888888899999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHh-hcCCchHHHHHHHHHHhhccCCCCCcchhhhhhccccCchhHHHHHHHHHHHhhcCCchhhcHHHHHHHHHH
Q 000634 758 ISISRIA-QYGLEDTLDELLASFCKFTTLLNPYATAEETLFAFSNDMKPKMATLAVFTLANNFGNSIRAGWRNIVDCLLK 836 (1380)
Q Consensus 758 ~~~a~ia-~~~l~~~~d~~v~~L~k~t~l~~~~~~~~~~~~~~g~~~K~~la~~~l~~ia~~~g~~l~~sW~~il~~l~~ 836 (1380)
++||.|+ +||+.+++|.++.+|||||+|.+|+.++++.+..||.|.|+++|+.++|.+++++|++++.+|++|++|+.+
T Consensus 773 ~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~ 852 (1386)
T KOG0928|consen 773 RKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQ 852 (1386)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999878899999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCcccccCCCCCCCCCCcccCCcccC-CCCCCCCC-CCCCCccccccccccCCCCCcccccc----hhhHhH
Q 000634 837 LKRLKLLPQSVIEFDISTTDAPSHSRAESGVVFP-AYDPTSGN-RRSSGMISRFTHFLSLDSPEDSISLG----MNEFEQ 910 (1380)
Q Consensus 837 l~~~~llp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~s~l~s~~~s~l~~~~~~~~~~~~----~~e~~~ 910 (1380)
|+++.|+|..+.+.....+. . .+.+.++. +++.+.++ +.++|++|+|++||++++.+++ +.| ++...+
T Consensus 853 l~r~~llp~~~~e~~~~~~~----~-~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~-~~Ptee~l~~~~~ 926 (1386)
T KOG0928|consen 853 LNRLVLLPLRLIEDLKNEPE----L-LKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEER-PCPTEEELSASKK 926 (1386)
T ss_pred HHhhccCcHhhhhhhhcCcc----c-cccCCCCCCccccCcccccccchHHHHHHHhcCCcccccC-CCCcHHHHhhhHH
Confidence 99999999998874433221 1 11233332 23344444 7899999999999999876543 233 223456
Q ss_pred HHHHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhchhhhhhhHHHHHH
Q 000634 911 NLKVIKQCQIGNIFSNSTNLPLEALQNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIANNNRFQAFWPSFHD 990 (1380)
Q Consensus 911 al~~i~~~~i~~LF~~s~~L~~esl~~fv~AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N~~Ri~~~W~~v~~ 990 (1380)
|++||++|+++++|+++++|+.+++.+++++|+..+... +.++|+..+||+|+|+.|.+.|+||+..+|+.+++
T Consensus 927 a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~------s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e 1000 (1386)
T KOG0928|consen 927 ALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL------SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYE 1000 (1386)
T ss_pred HhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc------cCcccchHHHHHHHHHHHHhccccceEeeehhhHH
Confidence 889999999999999999999999999999999998421 45678899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCC
Q 000634 991 YLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSDKLPEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPA 1070 (1380)
Q Consensus 991 hL~~v~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~~e~l~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~ 1070 (1380)
|+..++..+...++.++++|+.|++|+|.|++. |++.+.++++ ++++.++++++.+.+.+.++|...+.+++.++.+
T Consensus 1001 ~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~--yk~~l~d~l~-~sl~~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~ 1077 (1386)
T KOG0928|consen 1001 HLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLP--YKEFLSDELL-DSLRILLKLDPKILDAFLDKIAIFVSKLVKANAA 1077 (1386)
T ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhh--hhhhhhHHHh-hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877765668999999999999999998 8999999998 9999999999999999999999999999999999
Q ss_pred CcccccChHHHHHHHhccCCCCchhHHHHHHHHHHhhCCCccChhhHHHHHHHHHHhHhccCCCccchhhHhHhhhhhHH
Q 000634 1071 NLQSAVGWKSVLHLLSVTGRHPDTHEQAVETLIMLISDGTHISKATYAYCIDCAFSFVALKNSPLEKNLKILDLLSDSVN 1150 (1380)
Q Consensus 1071 ~l~s~~gW~~vf~iL~~~~~~~~~~~~afe~L~~Ivsd~~~lt~~nf~~cV~~l~~F~~~~~~~~n~sl~ai~ll~~~~~ 1150 (1380)
++++..||.++|++|..+++||++....|..+...+.|..|++|+||..||+|++.|++++.....+++.++|.+.....
T Consensus 1078 ~v~~~~~w~~~~slL~~~~~h~~a~~~~~~~~l~~m~e~~hl~~~~fe~~v~~~~~fve~~~~~~~~~l~~lde~s~sg~ 1157 (1386)
T KOG0928|consen 1078 NVHSKDGWALLFSLLELTARHPEADFLKFYRLLSKMSEASHLTPDNFELYVDCGSTFVEARVGQIMRSLSLLDEMSSSGE 1157 (1386)
T ss_pred HhhccccHHHHHHHHHHHhcCCchhHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccc
Confidence 99999999999999999999999999999988888889999999999999999999999987777889999999998888
Q ss_pred HHHHHhhhcccccCCccccccCCCCCchhhhhccCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhccc
Q 000634 1151 LLIQWYKNAWSESGNNYSIASSTSTSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTLAEDL 1230 (1380)
Q Consensus 1151 ~~~~~~~~~~~~~g~~~s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~ 1230 (1380)
...+|.+......++-.+ .+ ........+|++|++.++++|+|.|++|||+|++.|||+ ..+.++
T Consensus 1158 ~~~kw~~~~~~~~~~~~~-------------~~-~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~-~~~~~q 1222 (1386)
T KOG0928|consen 1158 VLDKWEIEAKNATESGDE-------------SK-KSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRI-IGALDQ 1222 (1386)
T ss_pred chhHHHHHHhhhhccccc-------------cc-ccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH-HHhhhc
Confidence 888998763333221110 11 112234559999999999999999999999999999997 557899
Q ss_pred CCChhhHHHHHHHHHHHhHHHHHHHHHHhhhccchhhhhh--chHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 000634 1231 DFSSINCINCFNLVIFAMVDDLHEKMIEYSRRENAEREMR--SMEGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVL 1308 (1380)
Q Consensus 1231 ~l~~~~W~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~--~~~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iL 1308 (1380)
.+.+..|..||+.|+||+++++++..... +++ .|++|++++.++++|+|++|+..+++.+.|..+|.++|
T Consensus 1223 ~l~~~~~~~Cf~~vlfpll~~l~~~l~~~--------~~~~~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~l 1294 (1386)
T KOG0928|consen 1223 GLAHSYWNPCFDLVLFPLLTDLLELLSDA--------SEKGNEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVL 1294 (1386)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhccc--------ccccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875433 334 49999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHhhhhcccCCCC---cchHHHHHHHHHHHHhcccCccccCCC
Q 000634 1309 RRMDTCMKADLGPYGETKLQETIPDLLRNMITMMKEREILAPK---EDEDLWEITYIQIQWIAPSLKEELFPD 1378 (1380)
Q Consensus 1309 d~~~~~m~~~~~~~~s~~L~Eav~esLKnmLLvm~~~g~l~~~---~~~~lW~~Tw~ri~~~lP~l~~el~p~ 1378 (1380)
++|++||+.+.++++++.+.|++||.||||++||++.|++.+. +.+.+|+.||.++++|+|+|+.||||.
T Consensus 1295 d~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~~~~p~l~~El~~~ 1367 (1386)
T KOG0928|consen 1295 DRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLNKIAPSLRDELFPD 1367 (1386)
T ss_pred HHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHHhcCchhhhhhCCC
Confidence 9999999999888889999999999999999999999999775 367899999999999999999999998
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=2e-179 Score=1760.28 Aligned_cols=1218 Identities=22% Similarity=0.385 Sum_probs=953.0
Q ss_pred cCCcccchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCc----ChHHHHHHHHHHHhhccccCCCCCchhHHH
Q 000634 86 TVDPSIYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTP----GVKDAINIVVTGITSCQLEKTDPISEDAVM 161 (1380)
Q Consensus 86 ~~~~~~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~----~~~~a~~~i~~av~~crfe~td~~~De~Vl 161 (1380)
..+|..++.||.++|+|+ ++||+.+||+||+|+++||+|+...+ .....++.++++||.|. + ..||.||
T Consensus 81 ~~~~~~i~~pl~lac~s~--~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~-~----~~de~iq 153 (1780)
T PLN03076 81 LAESELILSPLINACGTG--SAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCH-D----LGDEGIE 153 (1780)
T ss_pred ccCHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhc-c----CCchHHH
Confidence 458999999999999999 78999999999999999999964332 23478999999999995 2 4689999
Q ss_pred HHHHHHHHHHHcccCccccCchHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCcccccc---------
Q 000634 162 MRILQVLIAIMRHRASILLTDEAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKS--------- 232 (1380)
Q Consensus 162 lkILq~L~~ll~~~~g~~l~~~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~--------- 232 (1380)
|+|||+|+++++++. ..+||+.+.++|++||+|+.. +|+++++.||++||+|||..||+|+..-....
T Consensus 154 Lqilk~Ll~~v~s~~-~~vhg~~LLkaVR~cyni~l~--Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~ 230 (1780)
T PLN03076 154 LLVLKTLLSAVTSTS-LRIHGDCLLQAVRTCYDIYLG--SKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAE 230 (1780)
T ss_pred HHHHHHHHHHHcCCC-ceeEHHHHHHHHHHhheeeec--CCcHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 999999999999986 469999999999999999775 89999999999999999999999995221000
Q ss_pred --------C--------------------CC-----C--------CCC-----------CCCcc-----------cc-Cc
Q 000634 233 --------G--------------------EG-----S--------ESD-----------TEDVD-----------MD-AN 248 (1380)
Q Consensus 233 --------~--------------------~~-----~--------~~~-----------~~~~~-----------~~-~~ 248 (1380)
. ++ + ..+ ..+.+ +. ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1780)
T PLN03076 231 LMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWE 310 (1780)
T ss_pred ccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccc
Confidence 0 00 0 000 00000 00 00
Q ss_pred ---------------------c--CC-----CcchhhHHHHHHHHHhhcccccc--cCCCCCCCccchhhHHHHHHHHHH
Q 000634 249 ---------------------L--GS-----GYGIRSAVDIFHFLCSLLNVVEL--VEGEGSRTSDVDVQLFALVLINSA 298 (1380)
Q Consensus 249 ---------------------~--~~-----~~g~~~~~~lf~~Lc~L~~~~~~--~~~~~~~~~~~~~~~~~L~Li~~~ 298 (1380)
. .. .-..+||+.|||.||+|.--.-+ ...++ +..+.|++||+||+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~---~~~rsKllsL~Li~~i 387 (1780)
T PLN03076 311 ISMYKSALEGRKGELADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADP---QLMRGKILALELLKIL 387 (1780)
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccH---HHHHHHHHHHHHHHHH
Confidence 0 00 00358999999999999632111 11121 3357899999999999
Q ss_pred HHhcccccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCH
Q 000634 299 IELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAAS--GNSH 376 (1380)
Q Consensus 299 le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~~--~~~~ 376 (1380)
||++|+.|.+||.|+.+||++||++|++++.|+.+++|+++|+||++|+.+||.|||.|+|+||+.|++++++. ++++
T Consensus 388 le~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~ 467 (1780)
T PLN03076 388 LENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNF 467 (1780)
T ss_pred HhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 3569
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHhHhcCCCCCCccHHHHHHHHHHhhcCCCCCCC---------chhHHHHHHHHHHHHH
Q 000634 377 QLQEVALEGIINFCRQPTFLIEVYVNYDCDPLCRNVIEEIGKLLCKHSFPVSGPL---------TSSQIQAFEGLVILIH 447 (1380)
Q Consensus 377 ~~r~l~LE~l~~l~~~p~~~~~ly~nYDCd~~~~nlfe~lv~~L~k~a~~~~~~~---------~~~~~l~Le~l~~ii~ 447 (1380)
+||+++||+|.++|++|++++|+|+|||||.+++||||++++.|+|+|++.++.. ..++.+|||||+++++
T Consensus 468 ~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~ 547 (1780)
T PLN03076 468 QQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILR 547 (1780)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765332 2468899999999999
Q ss_pred HHHHhhhhcCC--CCCC-CCC----CcccccCCCccCC-------CCC-----CCcchHHHHHHHHHHhhhHHHHHHhhc
Q 000634 448 NIAESIDKEGD--TSPS-GPY----PVEITEYKPFWEE-------KPN-----DDSDTWVEYVRLRKAQKRKSLIAGNHF 508 (1380)
Q Consensus 448 ~i~~~~~~~~~--~~~~-~~~----~~~~~~~~~~~~~-------~~~-----~~~~~~~~~l~~~k~~K~~l~~~~~~F 508 (1380)
+|.+|++.... ...+ +.. ....+...+.+.. .+. .....+.+.++++|++|+.+.+|+.+|
T Consensus 548 sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~F 627 (1780)
T PLN03076 548 SMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLF 627 (1780)
T ss_pred HHHHHHHhhccCCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886411 0000 000 0000001111100 000 011234467899999999999999999
Q ss_pred ccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCCCCChHHHHHHHhcc
Q 000634 509 NRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGMTLDNALRTYLET 588 (1380)
Q Consensus 509 n~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~~~~~aLR~fl~~ 588 (1380)
|+|||+||+||+++|++++ +|++||+||++++||||++||||||+++++|.+||++|++.|||+|++||+|||.||..
T Consensus 628 N~~Pk~Gi~~L~~~~~i~~--~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~ 705 (1780)
T PLN03076 628 NRKPKKGIEFLINANKVGE--SPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQG 705 (1780)
T ss_pred ccCHHHHHHHHHHcCCCCC--CHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHh
Confidence 9999999999999999975 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHhhccCCCccccCCCCHHHHHHhhccCCCCCCCCHH
Q 000634 589 FRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPRE 668 (1380)
Q Consensus 589 frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~n~rg~~~g~d~~~~ 668 (1380)
||||||+|+||||||+||+|||+ +||+.|.++|++|+|+||+||||||+|||++|+|||+++|++|+||+|+|+|||+|
T Consensus 706 FrLPGEaQ~IdRime~Fa~rY~~-~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e 784 (1780)
T PLN03076 706 FRLPGEAQKIDRIMEKFAERYCK-CNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEE 784 (1780)
T ss_pred CCCCchHHHHHHHHHHHHHHHHH-hCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCcccccCCCCccc---CCChhHHHH-----------------------HHHh--------h-ccCCcce
Q 000634 669 YLSELFHSIASNAISVFGQSGQIV---DMNPSRWIE-----------------------LINR--------S-KTMLPFI 713 (1380)
Q Consensus 669 ~L~~iY~~I~~~~i~~~~~~~~~~---~~~~~~w~~-----------------------l~~~--------s-~~~~~~~ 713 (1380)
||++||++|+++||++++++.+.. .+...+|.. +++. . +..+.|+
T Consensus 785 ~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~ 864 (1780)
T PLN03076 785 FMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYY 864 (1780)
T ss_pred HHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCcee
Confidence 999999999999999999864311 111112211 1111 0 1123444
Q ss_pred eccccccchhhhhhhhhHhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHhhccCCCCCcch
Q 000634 714 LCDFDRRLGRDMFASIAGPAVAALSAFFDHADEDDMLQECIEGLISISRIA-QYGLEDTLDELLASFCKFTTLLNPYATA 792 (1380)
Q Consensus 714 ~~~~~~~~~~~mf~~~w~~~laals~~f~~~~d~~~~~~~l~g~~~~a~ia-~~~l~~~~d~~v~~L~k~t~l~~~~~~~ 792 (1380)
.. ....++++||+.+|+|++||+|++|+.++|+++++.||+||+.+++|| .|||+++||+||.+|||||+|.+|..
T Consensus 865 ~a-~~~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~e-- 941 (1780)
T PLN03076 865 AA-TDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPAD-- 941 (1780)
T ss_pred ec-chHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhh--
Confidence 32 234568999999999999999999999999999999999999999999 99999999999999999999988643
Q ss_pred hhhhhccccCchhHHHHHHHHHHHhhcCCchhhcHHHHHHHHHHHHHcccCCCCcccccC--CCCCCCC-C-CcccCCcc
Q 000634 793 EETLFAFSNDMKPKMATLAVFTLANNFGNSIRAGWRNIVDCLLKLKRLKLLPQSVIEFDI--STTDAPS-H-SRAESGVV 868 (1380)
Q Consensus 793 ~~~~~~~g~~~K~~la~~~l~~ia~~~g~~l~~sW~~il~~l~~l~~~~llp~~~~~~~~--~~~~~~~-~-~~~~~~~~ 868 (1380)
-..||++|+++||+||+.+|++|++||++||+||++|++++|++.++.+ +. +..+... . .+...+..
T Consensus 942 --------mk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~-d~~~~~~~~~~~~~~~~~~~~~ 1012 (1780)
T PLN03076 942 --------IKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPP-DATFFAAPQNESDKSKQAKSPI 1012 (1780)
T ss_pred --------hhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCc-chhhhccccccccccccccccc
Confidence 1459999999999999999999999999999999999999999999854 21 1111000 0 00000000
Q ss_pred cCCCC-CCCCC--CCCCCccc-cc-cccccCCCCCcccccchhhHhHH---HHHHHhhhhhhhhhhcCCCCHHHHHHHHH
Q 000634 869 FPAYD-PTSGN--RRSSGMIS-RF-THFLSLDSPEDSISLGMNEFEQN---LKVIKQCQIGNIFSNSTNLPLEALQNLGR 940 (1380)
Q Consensus 869 ~~~~~-~~~~~--~~~s~l~s-~~-~s~l~~~~~~~~~~~~~~e~~~a---l~~i~~~~i~~LF~~s~~L~~esl~~fv~ 940 (1380)
.|... .+.+. ....++++ ++ +....+.+...+.++.+.....+ ++.|.++.+++||++|++|+++|+++||+
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~ 1092 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVK 1092 (1780)
T ss_pred ccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHH
Confidence 00000 00000 00000110 00 00000000000111111111111 34577789999999999999999999999
Q ss_pred HHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhchhhhhhhHHHHH----HHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 000634 941 SLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIANNNRFQAFWPSFH----DYLLLVTQFPLFSPIPFAEKAMVGLFK 1016 (1380)
Q Consensus 941 AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N~~Ri~~~W~~v~----~hL~~v~~~~~~~~~~l~~rAv~~Llr 1016 (1380)
|||++|.++.+ . .++|++|+|+||++|+++||+|++.+|+.+| +||..++||++. .++..|+++|.+
T Consensus 1093 AL~~vS~eEl~---~---~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~---~va~fAidsLrQ 1163 (1780)
T PLN03076 1093 ALCKVSMEELR---S---PSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENL---SIAIFAMDSLRQ 1163 (1780)
T ss_pred HHHHhhHHHHc---c---CCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcch---hHHHHHHHHHHH
Confidence 99999955422 1 1478999999999999999999999888877 677788999875 589999999999
Q ss_pred HHHHHhhccCCCc-----chhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCC-
Q 000634 1017 VCLRLLSSYQSDK-----LPEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGR- 1090 (1380)
Q Consensus 1017 L~~~lL~~~~~e~-----l~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~- 1090 (1380)
+++++++ ++| .|+++| +||+.++. +....+|++.|++|+.+|+++++++|+| ||++||++|+.++.
T Consensus 1164 Ls~kfle---~eEL~~f~FQkefL-kPfe~im~--~s~~~eVrE~ILeCv~qmI~s~~~nIkS--GWktIF~VLs~aa~d 1235 (1780)
T PLN03076 1164 LSMKFLE---REELANYNFQNEFM-KPFVIVMR--KSNAVEIRELIIRCVSQMVLSRVNNVKS--GWKSMFMVFTTAAYD 1235 (1780)
T ss_pred HHHHhcc---hhhhhchhHHHHHH-HHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHhC
Confidence 9999998 444 578888 99999887 3445699999999999999999999999 99999999997764
Q ss_pred -CCchhHHHHHHHHHHhhCCCc-cC---hhhHHHHHHHHHHhHhccCCCccchhhHhHhhhhhHHHHHHHhhhc--cccc
Q 000634 1091 -HPDTHEQAVETLIMLISDGTH-IS---KATYAYCIDCAFSFVALKNSPLEKNLKILDLLSDSVNLLIQWYKNA--WSES 1163 (1380)
Q Consensus 1091 -~~~~~~~afe~L~~Ivsd~~~-lt---~~nf~~cV~~l~~F~~~~~~~~n~sl~ai~ll~~~~~~~~~~~~~~--~~~~ 1163 (1380)
++++++.||+++++|++|+.+ |+ +++|.+||+||.+|+.++.+ .|+|++|+++||.+...+.+-.... ....
T Consensus 1236 ~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-~nISL~AI~lL~~~~~~La~~~~~~~~~~~~ 1314 (1780)
T PLN03076 1236 DHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-KDISLNAIAFLRFCATKLAEGDLGSSSRNKD 1314 (1780)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-ccccHHHHHHHHHHHHHHHhccccccccccc
Confidence 678899999999999999854 55 69999999999999999876 4999999999998876554211000 0000
Q ss_pred CCccccccCCCCCchhhhhccCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHH
Q 000634 1164 GNNYSIASSTSTSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNL 1243 (1380)
Q Consensus 1164 g~~~s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~ 1243 (1380)
+......+.......++.......+....+|+|||.+|+++|.|+|+|||++||+||||+|. .||..|++..|..||+.
T Consensus 1315 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~-~yG~~Fs~~~W~~if~~ 1393 (1780)
T PLN03076 1315 KEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR-NHGHLFSLPLWERVFES 1393 (1780)
T ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HhhccCCHHHHHHHHHH
Confidence 00000000000000111111112233568999999999999999999999999999999998 59999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhhc---------cchhhhhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000634 1244 VIFAMVDDLHEKMIEYSRR---------ENAEREMRSM-EGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVLRRMDT 1313 (1380)
Q Consensus 1244 VLFPLL~~L~~~~~~~S~~---------~~~~~d~~~~-~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~ 1313 (1380)
|||||++.+.......... ++.+.|.+.| .||.++|+++++.+|.+|++.|. .+-.++|+.+..
T Consensus 1394 VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~------~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1394 VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN------PLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 9999999987542210000 1122356778 59999999999999999998876 477889999999
Q ss_pred HHhcCCCCCCcchhhhHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHh
Q 000634 1314 CMKADLGPYGETKLQETIPDLLRNMITMMKEREILAPKEDEDLWEITYIQIQWI 1367 (1380)
Q Consensus 1314 ~m~~~~~~~~s~~L~Eav~esLKnmLLvm~~~g~l~~~~~~~lW~~Tw~ri~~~ 1367 (1380)
|+..+ .+.|....-.+|+++++. ++..|. ++-|+.+-..+...
T Consensus 1468 ci~q~-----n~~la~ig~~~l~~li~~--ng~~F~----~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1468 FIKRP-----HQSLAGIGIAAFVRLMSN--AGHLFS----DEKWLEVVLSLKEA 1510 (1780)
T ss_pred HHcCc-----hHHHHHHHHHHHHHHHHH--hhccCC----HHHHHHHHHHHHHH
Confidence 99865 689999999999998864 445554 46888877777554
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-134 Score=1278.66 Aligned_cols=1157 Identities=24% Similarity=0.397 Sum_probs=919.6
Q ss_pred CCccCCcccchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCcC----hHHHHHHHHHHHhhccccCCCCCchh
Q 000634 83 EWRTVDPSIYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTPG----VKDAINIVVTGITSCQLEKTDPISED 158 (1380)
Q Consensus 83 ~~~~~~~~~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~~----~~~a~~~i~~av~~crfe~td~~~De 158 (1380)
+....+++.+++||.++|+++ +.+|+..|++|+||++.||.+.-.+.. -...+.+++.+||.|. .+.||
T Consensus 37 ~~~~~~~e~~~~p~~la~~t~--~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~~~~vc~~~-----~~~~e 109 (1514)
T KOG0929|consen 37 GLSLAEAELYLLPFELACDTK--SPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKIIEAVCKCF-----DGLDE 109 (1514)
T ss_pred cCCCcchhhhhChHHhhcCCC--CcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHHHhHhhhcc-----CCCch
Confidence 467789999999999999999 689999999999999999988744321 1257799999999994 23399
Q ss_pred HHHHHHHHHHHHHHcccCccccCchHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccC-----
Q 000634 159 AVMMRILQVLIAIMRHRASILLTDEAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSG----- 233 (1380)
Q Consensus 159 ~VllkILq~L~~ll~~~~g~~l~~~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~----- 233 (1380)
.++++++++|++.++++.. .++|+++..++++||.++.. + .+.+.+|.+||.||+..||.|+.....+..
T Consensus 110 ~~elq~~k~lL~av~s~~~-~i~~~~ll~~vr~c~~iyl~--s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~~i~vs 184 (1514)
T KOG0929|consen 110 SVELQVLKALLAAVTSQHI-EIHGDSLLLIVRTCYNIYLG--S--PINQTTAKATLTQMLNIVFRRMEEDSSDESQILVS 184 (1514)
T ss_pred hhhHhHHHHHHHHHhccce-eecCcchHHHHHHHHHHHhc--C--cccchHHHHHHHHHHHHHHHHhhhccCcccccccc
Confidence 9999999999999999864 59999999999999999985 4 899999999999999999999864322111
Q ss_pred -------CC-------------------CCCCC---CCcc-----------------------------ccCccCCCcch
Q 000634 234 -------EG-------------------SESDT---EDVD-----------------------------MDANLGSGYGI 255 (1380)
Q Consensus 234 -------~~-------------------~~~~~---~~~~-----------------------------~~~~~~~~~g~ 255 (1380)
++ ++.+. +..+ +......+...
T Consensus 185 ~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1514)
T KOG0929|consen 185 ELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGDSLSLRDAESPESESERDDDSERSSQNKLQ 264 (1514)
T ss_pred cccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCcccccCcccccccccccCcchhhccccHHH
Confidence 00 00000 0000 00111235567
Q ss_pred hhHHHHHHHHHhhccc-ccccCCCCCCCccchhhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhccCchH
Q 000634 256 RSAVDIFHFLCSLLNV-VELVEGEGSRTSDVDVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPL 334 (1380)
Q Consensus 256 ~~~~~lf~~Lc~L~~~-~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~ 334 (1380)
+||+++||.||+|.-- .....++. ..+ .+.|+++|+|+..+++++|+.|..+..|...+|++||-.|.++..|+.+.
T Consensus 265 ~Daflvfr~Lckls~k~~s~~~~d~-~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGalskn~vS~~~~ 342 (1514)
T KOG0929|consen 265 RDAFLVFRALCKLSMKPLSSEESDT-QSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALSKNSVSNVPM 342 (1514)
T ss_pred HhHHHHHHHHHHhhCCCCCCCCCCh-HHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHhhcccccchH
Confidence 8999999999999632 22112221 122 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCchHHHHHhHhcCCCCCCccHH
Q 000634 335 VLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAA-SGNSHQLQEVALEGIINFCRQPTFLIEVYVNYDCDPLCRNVI 413 (1380)
Q Consensus 335 ~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~-~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~nYDCd~~~~nlf 413 (1380)
+|+++|.|++.|+..+|.++|.|+|+||+.+++++++ ...+++||.+.|..+..+|.+|+.++++|+|||||.+..|||
T Consensus 343 vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nif 422 (1514)
T KOG0929|consen 343 VFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNSQNIF 422 (1514)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHhhhcCCCccccccccCCccccCCccHH
Confidence 9999999999999999999999999999999999998 445899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCC-C-------chhHHHHHHHHHHHHHHHHHhhhhcCCCCCC----CCCCccccc-CCCccCCCC
Q 000634 414 EEIGKLLCKHSFPVSGP-L-------TSSQIQAFEGLVILIHNIAESIDKEGDTSPS----GPYPVEITE-YKPFWEEKP 480 (1380)
Q Consensus 414 e~lv~~L~k~a~~~~~~-~-------~~~~~l~Le~l~~ii~~i~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 480 (1380)
|++++.++|.++..++. . ..++..++.||.++.+++..|.++....+.. ...+..+.. .........
T Consensus 423 er~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~~~~~~~~s~~~~~~ 502 (1514)
T KOG0929|consen 423 ERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTTPIENELNSDTQSND 502 (1514)
T ss_pred HHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCcchhhhccCcccccc
Confidence 99999999999762221 1 2346688999999999999998862211110 000000000 000000001
Q ss_pred CCCcchHHHHHHHHHHhhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhh
Q 000634 481 NDDSDTWVEYVRLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFH 560 (1380)
Q Consensus 481 ~~~~~~~~~~l~~~k~~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~ 560 (1380)
.++|++ .+..|.+|+ +.+|+..||.+||+||+||+++|++++ +|.+||+||..+.+|||+++|+|||+.+++|
T Consensus 503 ~~~~~q----~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~--sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~ 575 (1514)
T KOG0929|consen 503 ADDPEQ----FEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGT--SPLEIAEFLIGTEGLSKTILGDYLGEDDDFN 575 (1514)
T ss_pred ccChhh----hhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCC--CHHHHHHHHHhccCCCHHHHHHHhcCCcchh
Confidence 113333 456778888 999999999999999999999999986 8999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCC-CcCCCChHHHHHHHHHHhhccCC
Q 000634 561 IQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE-IFVAKDSVYIFCYSLIMLNTDQH 639 (1380)
Q Consensus 561 ~~vL~~f~~~fdf~~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~-~~~~~d~~~~l~ysiimLntdlh 639 (1380)
..||++|++.|||++++|++|||.||..||||||+|+|||+|++||+|||+ |||+ +|.++|+||+||||+||||||+|
T Consensus 576 ~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~-cNP~~lFssADtaYVLAfSlIMLnTDlH 654 (1514)
T KOG0929|consen 576 KAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCK-CNPGTLFSSADTAYVLAFSLIMLNTDLH 654 (1514)
T ss_pred HHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHh-cCCCccCCCccchHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999 9999 99999999999999999999999
Q ss_pred CccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhhCcccccCCCCcc--cCCCh----------------hHHH-
Q 000634 640 NPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSGQI--VDMNP----------------SRWI- 700 (1380)
Q Consensus 640 n~~vk~~mt~~~F~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~~~~~~~~--~~~~~----------------~~w~- 700 (1380)
||++|+|||++||++|+||+|+|+|+|++||+.+|+.|..+||+|.++.+.. .+.++ .++.
T Consensus 655 np~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~r~~~ 734 (1514)
T KOG0929|consen 655 NPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNSRMSA 734 (1514)
T ss_pred CchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccccccchhhhhhH
Confidence 9999999999999999999999999999999999999999999999876531 11110 1110
Q ss_pred --------HHHHhhcc-CCcceeccccccchhhhhhhhhHhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHh-hcCCch
Q 000634 701 --------ELINRSKT-MLPFILCDFDRRLGRDMFASIAGPAVAALSAFFDHADEDDMLQECIEGLISISRIA-QYGLED 770 (1380)
Q Consensus 701 --------~l~~~s~~-~~~~~~~~~~~~~~~~mf~~~w~~~laals~~f~~~~d~~~~~~~l~g~~~~a~ia-~~~l~~ 770 (1380)
.+..+... .+.|..... ....++||+.+|.|+++|++..|+.++|..+...|++||+.+.+|+ .++++.
T Consensus 735 ~~~s~~~~~~~e~~s~~~s~~~~ath-~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~ 813 (1514)
T KOG0929|consen 735 IDMSASQSQLKEKGSLSESVFYSATH-LISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMEL 813 (1514)
T ss_pred HHhhhhHHHHHHhcccccccceeccc-ceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCc
Confidence 11111111 244443322 3356899999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhccCCCCCcchhhhhhccccCchhHHHHHHHHHHHhhcCCchhhcHHHHHHHHHHHHHcccCCCCcccc
Q 000634 771 TLDELLASFCKFTTLLNPYATAEETLFAFSNDMKPKMATLAVFTLANNFGNSIRAGWRNIVDCLLKLKRLKLLPQSVIEF 850 (1380)
Q Consensus 771 ~~d~~v~~L~k~t~l~~~~~~~~~~~~~~g~~~K~~la~~~l~~ia~~~g~~l~~sW~~il~~l~~l~~~~llp~~~~~~ 850 (1380)
.||+|+++|.+||.+..+.. ...|+..+++++..||.+.|+++.++|..|+.|++++++.++++.+...-
T Consensus 814 ~rdAfv~al~~ft~l~~~~e----------~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~ 883 (1514)
T KOG0929|consen 814 GRDAFVQALARFTNLHAPSE----------MKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPN 883 (1514)
T ss_pred cccHHHHHHHHHHhccCHHH----------HhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999998876522 13478899999999999999999999999999999999999999876541
Q ss_pred cCCCCCCCCCCcccCCcccCCCCCCCCCCCCCCccccccccccCCCCCcccccchhhHhHHHHHHHhhhhhhhhhhcCCC
Q 000634 851 DISTTDAPSHSRAESGVVFPAYDPTSGNRRSSGMISRFTHFLSLDSPEDSISLGMNEFEQNLKVIKQCQIGNIFSNSTNL 930 (1380)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~s~~~s~l~~~~~~~~~~~~~~e~~~al~~i~~~~i~~LF~~s~~L 930 (1380)
..+... + ..+......|.....+.-| +.. . . .+-.+ ...| .++++||+++..+
T Consensus 884 ~~~~~~-----s-----~~~~~~~~~~~~~~~~~~s----~~e----~----~--~~~~s-~s~v--i~~d~Ift~S~~l 936 (1514)
T KOG0929|consen 884 KLPFVV-----S-----QREDYKKPGGSYDSSGDGS----RIE----N----V--GEKSS-VSVV--IQMDRIFTSSQRL 936 (1514)
T ss_pred cCcchh-----h-----hchhccCCccccccccccc----chh----c----c--ccchh-HHHH--HHhhhhhcccccC
Confidence 111110 0 0000000000000111111 000 0 0 00000 1112 3589999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhchhhhhhhHHHHH----HHHHHHhcCCCCCcHHH
Q 000634 931 PLEALQNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIANNNRFQAFWPSFH----DYLLLVTQFPLFSPIPF 1006 (1380)
Q Consensus 931 ~~esl~~fv~AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N~~Ri~~~W~~v~----~hL~~v~~~~~~~~~~l 1006 (1380)
+.++++.|++|||.++.++.. . ..+|++|.|+|+++|+.+||.||+..|..+| +|+..|+|+++. .+
T Consensus 937 ~~eaIv~FvkaLc~vs~~eL~---s---~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~---~v 1007 (1514)
T KOG0929|consen 937 DSEAIVDFVKALCKVSMDELL---S---PSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNE---SV 1007 (1514)
T ss_pred CchHHHHHHHHHHHHHHHHhc---C---CCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCC---ce
Confidence 999999999999999955422 1 1678999999999999999999998888777 788899999877 45
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcc-----hhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCcccccChHHH
Q 000634 1007 AEKAMVGLFKVCLRLLSSYQSDKL-----PEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSV 1081 (1380)
Q Consensus 1007 ~~rAv~~LlrL~~~lL~~~~~e~l-----~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~v 1081 (1380)
+-.|+++|+++.++++. ++++ +.+++ +|+..++.-+. ..+|++.|++|+. ++++| ||+.|
T Consensus 1008 aifa~DslRQlsmkfle---~~el~~f~Fq~~fl-~Pfe~im~~s~--s~~Irelv~rC~~-------~nikS--GWk~i 1072 (1514)
T KOG0929|consen 1008 AIFALDSLRQLSMKFLE---RSELDNFRFQKDFL-RPFEHIMKRSS--SAEIRELVVRCIS-------SNIKS--GWKNI 1072 (1514)
T ss_pred EEEehhhhHHhhhhhcc---hhhhhhhhHHHhhc-CcchHHhhccC--cchhHHHHHhhhh-------hhhhh--hhhHH
Confidence 66889999999999998 5554 56777 99999987554 3489999999998 78999 99999
Q ss_pred HHHHhccCCC--CchhHHHHHHHHHHhhCCC-ccCh---hhHHHHHHHHHHhHhccCCCccchhhHhHhhhhhHHHHHHH
Q 000634 1082 LHLLSVTGRH--PDTHEQAVETLIMLISDGT-HISK---ATYAYCIDCAFSFVALKNSPLEKNLKILDLLSDSVNLLIQW 1155 (1380)
Q Consensus 1082 f~iL~~~~~~--~~~~~~afe~L~~Ivsd~~-~lt~---~nf~~cV~~l~~F~~~~~~~~n~sl~ai~ll~~~~~~~~~~ 1155 (1380)
|+++..++.. ...+..+|+.+..++++.. ++.| +.|.+||.|+.+|+....-. +.++++|.+++.++..+.
T Consensus 1073 f~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~-~~s~~aI~~lr~ca~k~~-- 1149 (1514)
T KOG0929|consen 1073 FKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFP-DDSLNAIRFLRLCALKLA-- 1149 (1514)
T ss_pred HHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhc--
Confidence 9999999864 4568999999999999874 5665 89999999999999986554 899999999987655331
Q ss_pred hhhcccccCCccccccCCCCCchhhhhccCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChh
Q 000634 1156 YKNAWSESGNNYSIASSTSTSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSI 1235 (1380)
Q Consensus 1156 ~~~~~~~~g~~~s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~ 1235 (1380)
+ ... +..++. .+ ....+.|..+|.|++.++..++.|+|.+||..|++.||.++. .||+.+...
T Consensus 1150 --e---~~~-~~~~~~-------~~---~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~-~~g~~F~~~ 1212 (1514)
T KOG0929|consen 1150 --E---GVY-NEKLKV-------GK---DSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK-EHGDDFSKE 1212 (1514)
T ss_pred --c---ccc-hhhccc-------cc---ccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH-hhhhhccHH
Confidence 1 100 000110 00 001234889999999999999999999999999999999999 699999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhccchhhhhhchHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000634 1236 NCINCFNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVLRRMDTCM 1315 (1380)
Q Consensus 1236 ~W~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~~m 1315 (1380)
.|+.+|. ++||+++.+..+....+ ...+|.+|.++|+..++.+|.+|++++. .+-..+|..+..|+
T Consensus 1213 ~We~v~~-~~fpIF~~~~~~~~~~~-------~~eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1213 FWEDVFR-ILFPIFDNVKLDEDESE-------KDEWLSTTCNHALQALVDLFTQFFKQLN------NLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHHHH-heeecccccCcccchhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 9999999 99999999976653322 1228999999999999999999999987 36778888999999
Q ss_pred hcCCCCCCcchhhhHHHHHHHHHHHhhhhcccCCCCcchHHHHHHHHHHHHhc
Q 000634 1316 KADLGPYGETKLQETIPDLLRNMITMMKEREILAPKEDEDLWEITYIQIQWIA 1368 (1380)
Q Consensus 1316 ~~~~~~~~s~~L~Eav~esLKnmLLvm~~~g~l~~~~~~~lW~~Tw~ri~~~l 1368 (1380)
+.+ ...+.-+..++|-+.+.. ++.-|. +.-|+++-.-|...+
T Consensus 1279 ~~~-----n~~la~~g~~cl~~l~~~--n~~~fs----e~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1279 KQD-----NQQLARIGTSCLLQLVSS--NGEKFS----EEDWDEICNCILEAF 1320 (1514)
T ss_pred cCc-----chhhHHhHHHHHHHHHHh--cccccC----HhhHHHHHHHHHHHH
Confidence 876 467777888888876654 233343 467888887776543
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=7.7e-65 Score=642.13 Aligned_cols=910 Identities=21% Similarity=0.242 Sum_probs=605.8
Q ss_pred hhhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000634 286 DVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFV 365 (1380)
Q Consensus 286 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l 365 (1380)
..+..||.++.+++ ..|+.|+.++.+++|-.+.+..++...++++.++.+++.++..++.+.+.+.+.||..+
T Consensus 26 r~~l~~l~~~~~~l-------~~~~~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~i~~~~~~~~~~~f~~~~~~~f~s~ 98 (1024)
T COG5307 26 RSKLYSLPVSYSIL-------RDFKLLLDLLFPYLRLKLSLSARSPLLPVFEVGLEIIGLRLSNLPKLFKLESSVFFISI 98 (1024)
T ss_pred ccccccccchHHHh-------ccchHHHHHhcchhhhhhhhcccccchhhhhhhHHHHHHHHhhhhhhhhhccchHHHHH
Confidence 33445666555554 56679999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcC-CCCCHHHHHHHHHHHHHHhcCchHHHHHhHhcCCCCCC--------------------ccHHHHHHHHHHhhc
Q 000634 366 VLRVAA-SGNSHQLQEVALEGIINFCRQPTFLIEVYVNYDCDPLC--------------------RNVIEEIGKLLCKHS 424 (1380)
Q Consensus 366 ~~~i~~-~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~nYDCd~~~--------------------~nlfe~lv~~L~k~a 424 (1380)
+..+.. ...+..|+-+-|-.....|..|. ++.|+||||.... +...+-++..++..-
T Consensus 99 ~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~e~~~~~~ 176 (1024)
T COG5307 99 YFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLIIEQLSILW 176 (1024)
T ss_pred hhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCCccccccccCCCcchhhhhhhhhhcC
Confidence 887765 33345555555555566666666 6666666665431 234444555554332
Q ss_pred CCCCC-CC-----chhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcc---------cccCCCccCCCCCCCcchHH-
Q 000634 425 FPVSG-PL-----TSSQIQAFEGLVILIHNIAESIDKEGDTSPSGPYPVE---------ITEYKPFWEEKPNDDSDTWV- 488 (1380)
Q Consensus 425 ~~~~~-~~-----~~~~~l~Le~l~~ii~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~- 488 (1380)
-+.+. .. ...+....++.+.+++++....-...........|.. .+.+.+.. .+..|++..+
T Consensus 177 ~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~--~~~~d~~s~~~ 254 (1024)
T COG5307 177 ISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMK--NSSRDSSSFVN 254 (1024)
T ss_pred CCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCccccccc--ccccChhhhcc
Confidence 11110 00 1123344555555555544211000000000000000 00000000 0001111111
Q ss_pred ----HHHHHHHHhhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcC-CChHHHhhhccCChhhhHHH
Q 000634 489 ----EYVRLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQG-LDKNMIGDYLGDADEFHIQV 563 (1380)
Q Consensus 489 ----~~l~~~k~~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~-l~k~~igeyL~~~~~~~~~v 563 (1380)
-.....|.+|+.+++|++.||.+|++||..|.+.++++ +.++.++|.||..+.+ +||+.+|+|||++++.|..|
T Consensus 255 ~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~-~d~~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~v 333 (1024)
T COG5307 255 SDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFID-SDSHKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAV 333 (1024)
T ss_pred chHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCC-cccchHHHHHHHhccCcccHHHHHHHhcCCchhHHHH
Confidence 02234789999999999999999999999999999998 4589999999877755 99999999999998789999
Q ss_pred HHHHHhccCCCCCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCCcCCC-ChHHHHHHHHHHhhccCCCcc
Q 000634 564 LKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAK-DSVYIFCYSLIMLNTDQHNPQ 642 (1380)
Q Consensus 564 L~~f~~~fdf~~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~~~-d~~~~l~ysiimLntdlhn~~ 642 (1380)
|++|++.|||+|++||+|||.||..||||||+|+|||+||+||.+||+ +||..+.++ |+||+||||+||||||+|||+
T Consensus 334 L~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~-~Np~~~~~~~D~vyiLafSlimLNTDlHNp~ 412 (1024)
T COG5307 334 LREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYS-DNPKKFSSKPDSVYILAFSLIMLNTDLHNPN 412 (1024)
T ss_pred HHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHH-hCcccccCccceeehhHHHHHHHhccccChh
Confidence 999999999999999999999999999999999999999999999999 789999988 999999999999999999999
Q ss_pred ccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhhCcccccCCCCcccCCChhHHHHHHHhhccCCcceeccccccch
Q 000634 643 VKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSGQIVDMNPSRWIELINRSKTMLPFILCDFDRRLG 722 (1380)
Q Consensus 643 vk~~mt~~~F~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~w~~l~~~s~~~~~~~~~~~~~~~~ 722 (1380)
+|.|||++||++|++|+|+|+|||++||.++|++|+++||+++++++.........|..+........++- .+.....+
T Consensus 413 iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~~~~~~~~~~~ss~~~~~~~~-rd~~~~~~ 491 (1024)
T COG5307 413 IKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSETSPEDNWPSLDSSFTNIAEFG-RDNQRVAD 491 (1024)
T ss_pred hhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccccccccchhhhhhhhhhhhcc-cccccchh
Confidence 99999999999999999999999999999999999999999999977422211233433332211111111 11122235
Q ss_pred hhhhhhhhHhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHHhhccCCCCC------c-----
Q 000634 723 RDMFASIAGPAVAALSAFFDHADEDDMLQECIEGLISISRIA-QYGLEDTLDELLASFCKFTTLLNPY------A----- 790 (1380)
Q Consensus 723 ~~mf~~~w~~~laals~~f~~~~d~~~~~~~l~g~~~~a~ia-~~~l~~~~d~~v~~L~k~t~l~~~~------~----- 790 (1380)
+.+|+.+|+-+.+++...|..+.++-.....+.++++|..+| .|.+..++|+++.++++++++.+.+ .
T Consensus 492 ~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~~~~~~~ 571 (1024)
T COG5307 492 ATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPYLFIPSE 571 (1024)
T ss_pred HhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCccccccccCccc
Confidence 678888888888888888888888888888889999999999 9999999999999999999886532 0
Q ss_pred ------chhhhhhccccCchhHHHHHHHHHHHhhcCCc--h-hhcHHHHHHHHHHHHHcccCCCCcccccCCCCCCCCCC
Q 000634 791 ------TAEETLFAFSNDMKPKMATLAVFTLANNFGNS--I-RAGWRNIVDCLLKLKRLKLLPQSVIEFDISTTDAPSHS 861 (1380)
Q Consensus 791 ------~~~~~~~~~g~~~K~~la~~~l~~ia~~~g~~--l-~~sW~~il~~l~~l~~~~llp~~~~~~~~~~~~~~~~~ 861 (1380)
++-+.++.+|+..+++++.+.++.+..+.|+. + +..|..+-..-..++...++-.+..
T Consensus 572 d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~------------- 638 (1024)
T COG5307 572 DSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH------------- 638 (1024)
T ss_pred cccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-------------
Confidence 12245678999999999999999999999883 3 5799999988888877765443211
Q ss_pred cccCCcccCCCCCCCCCCCCCCccccccccccCCCCCcccccchhhHhHHHHHHHhhhhhhhhhhcCCCCH-HHHHHHHH
Q 000634 862 RAESGVVFPAYDPTSGNRRSSGMISRFTHFLSLDSPEDSISLGMNEFEQNLKVIKQCQIGNIFSNSTNLPL-EALQNLGR 940 (1380)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~s~l~s~~~s~l~~~~~~~~~~~~~~e~~~al~~i~~~~i~~LF~~s~~L~~-esl~~fv~ 940 (1380)
..+... ..+.. .++. ---++++...+.+.. .++.++++
T Consensus 639 ------~~~~~~-------------------~~~~~--------~~~~--------~~~~~i~~~~s~~s~~~~~l~~~k 677 (1024)
T COG5307 639 ------FSPSIV-------------------KKLGS--------PELP--------KLNPDISSGKSKLSVWSAVLSVFK 677 (1024)
T ss_pred ------cccccc-------------------ccccC--------cccc--------ccCcccccccccccccchHHHHHH
Confidence 000000 00000 0000 012344555555565 66777888
Q ss_pred HHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhchhhhhh---hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Q 000634 941 SLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIANNNRFQA---FWPSFHDYLLLVTQFPLFSPIPFAEKAMVGLFKV 1017 (1380)
Q Consensus 941 AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N~~Ri~~---~W~~v~~hL~~v~~~~~~~~~~l~~rAv~~LlrL 1017 (1380)
+++..- .+.. .+|+.++++..|++++.. +|..+......+....+. .+.+.+++...++
T Consensus 678 ~~~~~d-------------~~~~--~~q~~v~~s~~n~~~i~~~~~i~~~~~~~~~~~~~~~~~---~l~~s~~~~~~q~ 739 (1024)
T COG5307 678 AILSSD-------------LPSP--PLQKEVDISKKNVDIIKSESKISNVLFKNSEGLSPDLNK---TLLESALDSKSQL 739 (1024)
T ss_pred HHHhcc-------------CCCC--CcHHhhhHHhhhhhhhhhhhHHHhhcccchhhccccccc---cchhcccchhhhh
Confidence 887722 1111 689999999999999865 565555555555554433 4677888888888
Q ss_pred HHHHhhccCCCcc-----hhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCCCC
Q 000634 1018 CLRLLSSYQSDKL-----PEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGRHP 1092 (1380)
Q Consensus 1018 ~~~lL~~~~~e~l-----~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~~~ 1092 (1380)
..+++. .|++ +..++ .++.....+ +....|.+..+.|...++++....+.+ | +++|.++......+
T Consensus 740 s~~f~~---iee~~~~~f~~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~s~~~s--~-~~i~~~~~~~~~~~ 810 (1024)
T COG5307 740 SSRFLE---IEELSDFGFQIALL-LPFEYSVEV--SLVVAVKELVIGCSDNLLTEAASSIAS--G-KTIFEISAYEDLSS 810 (1024)
T ss_pred ccccCC---hhhhcchhHHHHHh-ccccccccc--cceeeeeeeehhhHHHHHHHHHHhhhc--c-ccceeeeecccccc
Confidence 887776 3332 22222 333322222 234567788889999999998889999 8 99888886655433
Q ss_pred chhHHHHHHHHHHhhCCCccCh-hhHHHHHHHHHHhHhccCCCccchhhHhHhhhhhHHHHHHHhhhcccccCCcccccc
Q 000634 1093 DTHEQAVETLIMLISDGTHISK-ATYAYCIDCAFSFVALKNSPLEKNLKILDLLSDSVNLLIQWYKNAWSESGNNYSIAS 1171 (1380)
Q Consensus 1093 ~~~~~afe~L~~Ivsd~~~lt~-~nf~~cV~~l~~F~~~~~~~~n~sl~ai~ll~~~~~~~~~~~~~~~~~~g~~~s~~s 1171 (1380)
. .+..++. +..+..-..+ ++|...+.+-....-..... -..+..++.++.....+.-|.-- ...
T Consensus 811 ~-~~~~~s~---~~~~e~v~s~~n~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~wk~~-~~~--------- 875 (1024)
T COG5307 811 T-LRYILSS---LSNDELVLSQENLFIELLSSKNEGKQNDKNL-ELRLHSVDYLRFLLPNVENWKNL-SSV--------- 875 (1024)
T ss_pred h-hhhHHHH---hcchhhhhChhhHHHHHHhhhHHHHHhccch-hhhhccHHHHHHHhHHHHHHHHH-HHH---------
Confidence 2 2223322 2222234555 56666665555444443222 34456666666555554445321 000
Q ss_pred CCCCCchhhhhccCchhHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHH
Q 000634 1172 STSTSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLAR-REEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVD 1250 (1380)
Q Consensus 1172 ~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~-R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~ 1250 (1380)
.. ...-....|.+.+.++.++.... --++ |..++. ++..+....|+.+...-+||++.
T Consensus 876 ----------~~--~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~-~~d~~~~~~~e~i~~~~~~~~~~ 934 (1024)
T COG5307 876 ----------LS--ANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLLS-LLDDFMSAFWEKISKKESFYIKS 934 (1024)
T ss_pred ----------HH--hhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHHH-hhhHHHHHHHHHHhhhhhheecc
Confidence 00 01113578999999988887754 2333 666663 77778889999999999999887
Q ss_pred HHHHHHHHhhhccchhhhhhchHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhcCCCCCCcchhhhH
Q 000634 1251 DLHEKMIEYSRRENAEREMRSMEGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVLRRMDTCMKADLGPYGETKLQET 1330 (1380)
Q Consensus 1251 ~L~~~~~~~S~~~~~~~d~~~~~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~~m~~~~~~~~s~~L~Ea 1330 (1380)
-..-+....+....++.+..+..-|.+.|+.-..-.|.+.+..+.. ..|.-+| ...|.+ +.+++...
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~~~~l--~~~c~~------~~~~~~~~ 1001 (1024)
T COG5307 935 GASGPNSDKTNLDNDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAGKLIL--LHQCLN------NCDQLGLG 1001 (1024)
T ss_pred ccccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH--HHhhcC------cHhhhhhh
Confidence 6542211100000112122334445555555555566666655441 2343333 344422 35666666
Q ss_pred HHHHHHHHH
Q 000634 1331 IPDLLRNMI 1339 (1380)
Q Consensus 1331 v~esLKnmL 1339 (1380)
.-+.+++++
T Consensus 1002 ~~~~~~~~~ 1010 (1024)
T COG5307 1002 AIETLEEIL 1010 (1024)
T ss_pred hHHHHhhhh
Confidence 666666554
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-60 Score=585.75 Aligned_cols=1033 Identities=14% Similarity=0.101 Sum_probs=677.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCcCCC--ccCCcccchHHHHHHhcCCCCCcchHHHHH
Q 000634 37 LNTEVGSVLAVIRRPLDAHYVQEDTFESAVVQSLKSLRSLIFNPQQEW--RTVDPSIYLSPFLDVVQSDDIPAAATGVAL 114 (1380)
Q Consensus 37 ~~~E~~~v~~~~rr~~r~~~~~~~~~~~~l~~~~~~Lr~~l~~~~~~~--~~~~~~~~l~PFL~vi~s~~~~~~it~~AL 114 (1380)
+.+++..+=++.|| ++ ....+...++++.||+ +.+...|= -...-++++.||+.+|.++ +.+.+-+||
T Consensus 15 L~adLrsLsseArk----Kn---n~VK~aAdkSi~~Lr~-isS~s~ds~vlet~~edf~~PfllaC~sr--~tRl~~ial 84 (1610)
T KOG1848|consen 15 LLADLRSLSSEARK----KN---NEVKLAADKSIQELRQ-ISSASRDSDVLETPNEDFLVPFLLACISR--NTRLFVIAL 84 (1610)
T ss_pred HHHHHHHhhHHHHh----hc---hHHHHHHHhHHHHHHh-hccccccccccccCCcccccceeeecccC--cccceeeHH
Confidence 56777777777776 22 1223447889999996 55442221 1111478999999999999 669999999
Q ss_pred HHHHHHHccCCCCCCCcChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHcccCccccCchHHHHHHHHHHH
Q 000634 115 SAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTDEAVCTIVNTCFH 194 (1380)
Q Consensus 115 ~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~~ll~~~~g~~l~~~~v~~~l~~C~~ 194 (1380)
+|+||+..+..++|. +.++.+..-+.++.. . |..|||+||+.+-++.++ +..++++.+...+..||+
T Consensus 85 s~iQkL~~~dsleps--~~aeildn~L~a~~q--------a--e~~QLrvLQtiPii~~sy-l~fi~~p~l~kll~iCfn 151 (1610)
T KOG1848|consen 85 SCIQKLGRHDSLEPS--VTAEILDNNLWAAAQ--------A--EWIQLRVLQTIPIIFFSY-LTFITGPPLLKLLIICFN 151 (1610)
T ss_pred HHHHHHhccCCCCCc--ccHHHHHHHHHHHHH--------H--HHHHHhhhccccceeeec-eeeccCcHHHHHHHHHHH
Confidence 999999999999884 222223222222221 1 559999999999999996 567999999999999999
Q ss_pred HhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccCCCCCCCCCCcccc-----CccCCCcchhhHHHHHHHHHhhc
Q 000634 195 VVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMD-----ANLGSGYGIRSAVDIFHFLCSLL 269 (1380)
Q Consensus 195 l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~lf~~Lc~L~ 269 (1380)
+.++ ++.++-|||.||++|+|..||+||+..++..+...++-.+..... .....| -..+++-.|..+|...
T Consensus 152 Ll~~---knkvV~NaAaAtlrQlV~~vFdrv~ies~~~d~~l~sl~~~s~t~sl~aa~~~~~~-l~~dI~~~~~~i~l~~ 227 (1610)
T KOG1848|consen 152 LLYQ---KNKVVFNAAAATLRQLVLLVFDRVPIESDAFDFILPSLTEASGTSSLEAALTALDP-LQKDICVGFENIQLMY 227 (1610)
T ss_pred HHcC---CCcceechhHHHHHHHHHHHHHhcccccccccccchhhhccCCccchhhcccccch-HHHhHhcchHHHHHhc
Confidence 9986 455999999999999999999999954433221100000000000 001111 1245666677777776
Q ss_pred ccccccCCCCCCCccchhhHHHHHHHHHHHHhcccccCCchHHH--HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH
Q 000634 270 NVVELVEGEGSRTSDVDVQLFALVLINSAIELSGDAIGKHPKLL--RMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIY 347 (1380)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~--~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~ 347 (1380)
+...+++.- ...+.++..|++++++++.+....+-.|..|. ++++...||++.+.+. .+++++..+.
T Consensus 228 ~~~~~~~L~---~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~--------~sv~~i~~l~ 296 (1610)
T KOG1848|consen 228 PAIFDQLLA---FIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLL--------RSVDLIQKLA 296 (1610)
T ss_pred ccccHhHHh---cchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHH--------HHHHHHHHHh
Confidence 665544432 34467788999999999999999999999999 9999999999998763 2222222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHh---------------------------------------------cCCCCCHHHHHH
Q 000634 348 H-FLRRFIRLQLEAFFGFVVLRV---------------------------------------------AASGNSHQLQEV 381 (1380)
Q Consensus 348 ~-~lr~~Lk~qlE~fl~~l~~~i---------------------------------------------~~~~~~~~~r~l 381 (1380)
. ..-...+.++|++.+.+..-+ -....+.|+|-+
T Consensus 297 ~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l 376 (1610)
T KOG1848|consen 297 CHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFL 376 (1610)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHh
Confidence 1 111122333333333332100 012356789999
Q ss_pred HHHHHHHHhcCchHHHHHhHhcCCCCCCccHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 000634 382 ALEGIINFCRQPTFLIEVYVNYDCDPLCRNVIEEIGKLLCKHSFPVSGPLTSSQIQAFEGLVILIHNIAESIDKEGDTSP 461 (1380)
Q Consensus 382 ~LE~l~~l~~~p~~~~~ly~nYDCd~~~~nlfe~lv~~L~k~a~~~~~~~~~~~~l~Le~l~~ii~~i~~~~~~~~~~~~ 461 (1380)
++++++.++.++..+..++.|+||++.+.++++..+.-+...++ ++| +..+-++|.+..++... .
T Consensus 377 ~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy-----------~~l--v~ti~nsi~e~l~k~s~--e 441 (1610)
T KOG1848|consen 377 DFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY-----------KEL--VGTISNSIQEMLNKSSI--E 441 (1610)
T ss_pred HHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH-----------HHH--HHhhhHHHHHHHHHhHH--h
Confidence 99999999999999999999999999999999987766655542 122 22244455543332210 0
Q ss_pred CCCCCcccccCCCccCCCCCCCcchHHHHHHHHHHhhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhh
Q 000634 462 SGPYPVEITEYKPFWEEKPNDDSDTWVEYVRLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFT 541 (1380)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~ 541 (1380)
+ ++. .|-.+ .+||++- . ..|..
T Consensus 442 s--------------------g~~---------------------eFt~k-~k~Ie~~------~-dnds~--------- 463 (1610)
T KOG1848|consen 442 S--------------------GGS---------------------EFTSK-EKGIELR------E-DNDSM--------- 463 (1610)
T ss_pred h--------------------cCc---------------------cchhh-hcCceee------c-cCchH---------
Confidence 0 000 01000 1233221 0 01111
Q ss_pred cCCChHHHhhhccCChhhhHHHHHHHHhccCCCCCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCCcCCC
Q 000634 542 QGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAK 621 (1380)
Q Consensus 542 ~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~~~ 621 (1380)
...++..+. + ++-...+-.
T Consensus 464 ------------------stavl~~l~-------------------------------------~------~~~~li~e~ 482 (1610)
T KOG1848|consen 464 ------------------STAVLLQLS-------------------------------------F------SNKVLIPEG 482 (1610)
T ss_pred ------------------HHHHHHHHH-------------------------------------h------hhhhhcccc
Confidence 122332221 0 111111111
Q ss_pred ChHHHHHHHHHHhhccCCCccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhhCcccccCCCCcccCCChhHHHH
Q 000634 622 DSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSGQIVDMNPSRWIE 701 (1380)
Q Consensus 622 d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~~~~~~~~~~~~~~~w~~ 701 (1380)
-..+.++||+... +..+|-. +|.. .+... +.+
T Consensus 483 ~~ss~~avSt~~~-------------~a~~v~~------------------l~~~--~~~~s-~k~-------------- 514 (1610)
T KOG1848|consen 483 LYSSRMAVSTLLK-------------RAQDVLH------------------LYIE--DEVLS-NKC-------------- 514 (1610)
T ss_pred chhhhHHHHHHHH-------------HHHHHHH------------------Hhhh--hhhhc-cCC--------------
Confidence 2234566665421 1122211 1100 00000 000
Q ss_pred HHHhhccCCcceeccccccchhhhhhhhhHhHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHh-hcCCchHHHHHHHHHH
Q 000634 702 LINRSKTMLPFILCDFDRRLGRDMFASIAGPAVAALSAFFDHADEDDMLQECIEGLISISRIA-QYGLEDTLDELLASFC 780 (1380)
Q Consensus 702 l~~~s~~~~~~~~~~~~~~~~~~mf~~~w~~~laals~~f~~~~d~~~~~~~l~g~~~~a~ia-~~~l~~~~d~~v~~L~ 780 (1380)
++..+ +...+-+++....|..++++++....++.|+.+....+.+....++.| ..+-.++..+++..||
T Consensus 515 ---------~l~~~-~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~ 584 (1610)
T KOG1848|consen 515 ---------PLPRQ-TKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALV 584 (1610)
T ss_pred ---------ccccc-eeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhC
Confidence 00000 112234567888899999999999999999999999999999999999 9999999999999999
Q ss_pred hhccCCCCC----------cc------hhhhhh---------------------------ccccCchhHHHHHHHHHHHh
Q 000634 781 KFTTLLNPY----------AT------AEETLF---------------------------AFSNDMKPKMATLAVFTLAN 817 (1380)
Q Consensus 781 k~t~l~~~~----------~~------~~~~~~---------------------------~~g~~~K~~la~~~l~~ia~ 817 (1380)
+|+....++ +. .++..+ +.-...||..|+|++++++.
T Consensus 585 ~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~ 664 (1610)
T KOG1848|consen 585 PFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMD 664 (1610)
T ss_pred CcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHH
Confidence 998543211 00 011000 11235689999999999999
Q ss_pred hcCCchhhcHHHHHHHHHHHHHcccC-CCCcccccCCCCCCCCCCcccCCcccCCCCCCCCCCCCCCccccccccccCCC
Q 000634 818 NFGNSIRAGWRNIVDCLLKLKRLKLL-PQSVIEFDISTTDAPSHSRAESGVVFPAYDPTSGNRRSSGMISRFTHFLSLDS 896 (1380)
Q Consensus 818 ~~g~~l~~sW~~il~~l~~l~~~~ll-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~s~~~s~l~~~~ 896 (1380)
++-..++.+|..++.+...|.+..-. |....... +.+.|.. +
T Consensus 665 ~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v---------------------------~t~~~~h-------p--- 707 (1610)
T KOG1848|consen 665 YELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAV---------------------------ITSSSVH-------P--- 707 (1610)
T ss_pred HHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHH---------------------------HhcCCCC-------C---
Confidence 99999999999999999988875321 22111000 0011100 0
Q ss_pred CCcccccchhhHhHHH--HHHHhhhhhhhhhhcCCCCHHHHHHHHHHHHHHhcccCCccCCCCccccc--hhhHHHHHHH
Q 000634 897 PEDSISLGMNEFEQNL--KVIKQCQIGNIFSNSTNLPLEALQNLGRSLIFAAAGKGQKFSTPVEEEET--VGFCWDLIIA 972 (1380)
Q Consensus 897 ~~~~~~~~~~e~~~al--~~i~~~~i~~LF~~s~~L~~esl~~fv~AL~~ls~~~~~~~~~s~~~e~~--~~F~Leklv~ 972 (1380)
.+|.++..++. +.+.+.--+++|.+++.++..+...+++||.++++.......... ...- -.|-++..+-
T Consensus 708 -----~~p~~~~~~~ynd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~-~sslr~~~~~l~v~~~ 781 (1610)
T KOG1848|consen 708 -----IQPLTAPRQSYNDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCS-CSSLRFLDSKLDVSGW 781 (1610)
T ss_pred -----CCcchhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhcc-ccccccccchhhhhHH
Confidence 01111111111 223344458999999999999999999999999864321100000 0001 1255666677
Q ss_pred HHhhchhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhccCCC---cchhHHHHHhHHHHhccCHHH
Q 000634 973 IAIANNNRFQAFWPSFHDYLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSD---KLPEELIFKSINLMWKLDKEI 1049 (1380)
Q Consensus 973 V~l~N~~Ri~~~W~~v~~hL~~v~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~~e---~l~~~ll~~sL~~L~~l~~~~ 1049 (1380)
....|-.|-...|....+||...+++... .+...+...+-+.+..--. +..+ +....++ -++.......+-
T Consensus 782 ~~~l~e~snq~~~~naa~~l~t~~n~vl~---s~~~~~asals~da~~dv~-sk~ti~~es~~~~l-~sl~v~~~s~~~- 855 (1610)
T KOG1848|consen 782 SLILKELSNQFKIINAAPELRTRANNVLA---SILVDVASALSNDASPDVY-SKQTIFFESLGMLL-PSLEVSDNSSRG- 855 (1610)
T ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHH---HHHhhhhhhhhcccccchh-ccceeeHhhhHHHH-HHHHHHHhcCcc-
Confidence 77777777788999999999888776432 2222222222222111000 0000 1122232 222222222221
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCC-----CCchhHHHHHHHHHHhhCC-CccChhhHHHHHHH
Q 000634 1050 LDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGR-----HPDTHEQAVETLIMLISDG-THISKATYAYCIDC 1123 (1380)
Q Consensus 1050 ~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~-----~~~~~~~afe~L~~Ivsd~-~~lt~~nf~~cV~~ 1123 (1380)
.+++...+++|.+++++.|+.+-+ ||..||++|+.++. +.+.++.||++|++|++|| .+||.+|+..|||+
T Consensus 856 -~evr~~sl~~l~silet~ge~ll~--~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 856 -VEVRISSLEALVSILETVGEHLLH--GWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDT 932 (1610)
T ss_pred -ceeeHHHHHHHHHHHhccchhhcc--ccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHH
Confidence 367778889999999999999999 89999999998763 5678999999999999999 57999999999999
Q ss_pred HHHhHhccCCCccchhhHhHhhhhhHHHHHHHhhhcccccCCcc----ccccCCCCCchhhhhccCchhHHHHHHHHHHH
Q 000634 1124 AFSFVALKNSPLEKNLKILDLLSDSVNLLIQWYKNAWSESGNNY----SIASSTSTSSLEDYKGLNSLNFAVNLFIKLGE 1199 (1380)
Q Consensus 1124 l~~F~~~~~~~~n~sl~ai~ll~~~~~~~~~~~~~~~~~~g~~~----s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~ 1199 (1380)
+..|++|..|. |||++||+++|+..+.+..-.++..++ +.++ .++++.+. ....+..+|+.|+.
T Consensus 933 l~~fs~Qktdl-NISltAi~lfWtvsDfl~~km~S~sed-~~~~~~~e~~~ss~~~----------~~~l~e~lwi~ll~ 1000 (1610)
T KOG1848|consen 933 LLVFSRQKTDL-NISLTAIGLFWTVSDFLKNKMFSTSED-SCAYNSVEDLYSSMKS----------KEILPEVLWIMLLV 1000 (1610)
T ss_pred HHHHHhhhccc-cccHHHHHHHHHHHHHHHhhhhccchh-hhhhcchhhhcccccc----------hhhhhhHHHHHHHH
Confidence 99999999886 999999999999888765411211111 1111 12221110 12247899999999
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHHHHHHHHHHhhhccchhhhhhchHHHHHHH
Q 000634 1200 ALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEGTLKNA 1279 (1380)
Q Consensus 1200 ~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~ET~v~a 1279 (1380)
.|+++|.|.|+||||+|+||||||+.+ ||..|++..|+.|||.|+||||+...-..+. +-+.+.++++|+||.+++
T Consensus 1001 ~L~~~~~dsr~eVRngAvqtlfri~~S-hg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~---ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNS-HGSKLGTNAWASCCWLVIMPLLDSQPIQNVS---EWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHhccchHHHhhhHHHHHHHHHhh-hcccCChhHHHHHHHHHHHHHhccccccchh---hhcchhHhhhhhhhhhhh
Confidence 999999999999999999999999995 9999999999999999999999976322211 124455789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHhhhhcccCCCC--------
Q 000634 1280 MELLANVFLQFIKQIAESPGFRTFWLGVLRRMDTCMKADLGPYGETKLQETIPDLLRNMITMMKEREILAPK-------- 1351 (1380)
Q Consensus 1280 l~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~~m~~~~~~~~s~~L~Eav~esLKnmLLvm~~~g~l~~~-------- 1351 (1380)
++|++|+|..|+..|...++|.+.|..+|++|++.... .+.++.-|+..++..++.-.-..|.+.-.
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~-----~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~v 1151 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSD-----ISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLV 1151 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc-----CChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhh
Confidence 99999999999999999999999999999999998865 47889999999999988755444443211
Q ss_pred ----------cchHHHHHHHHHHHHhcccCc
Q 000634 1352 ----------EDEDLWEITYIQIQWIAPSLK 1372 (1380)
Q Consensus 1352 ----------~~~~lW~~Tw~ri~~~lP~l~ 1372 (1380)
....-|...|+-+.+++-||-
T Consensus 1152 f~~y~~~~~~~ssas~~t~~kv~~eiltgl~ 1182 (1610)
T KOG1848|consen 1152 FINYGRFCEVSSSASERTLAKVSQEILTGLI 1182 (1610)
T ss_pred hhhHhhhcccccccchhHHHHHHHHHHhhhH
Confidence 123568888888888887775
No 6
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-50 Score=422.66 Aligned_cols=194 Identities=43% Similarity=0.758 Sum_probs=188.0
Q ss_pred HHHhhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCC
Q 000634 494 RKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEF 573 (1380)
Q Consensus 494 ~k~~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf 573 (1380)
.+++-+.+..|-.+||.+|+|||+||+++.++.. ||++||.||+.-.||+|++||+|||.+++||.+||++|++.+.|
T Consensus 58 t~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~--dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef 135 (395)
T KOG0930|consen 58 TKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQN--DPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEF 135 (395)
T ss_pred hHHHhHHHhhchhhcCCChHHHhHHHHHcccccC--CHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHh
Confidence 3556667888999999999999999999999975 89999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHhhccCCCccccCCCCHHHHH
Q 000634 574 AGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFI 653 (1380)
Q Consensus 574 ~~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~ 653 (1380)
.+++++.|||.||-+||||||||+|||+||+||++||. |||++|.+.|++|+|+||+|||||.+||||||.|-++|.|+
T Consensus 136 ~dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYcl-cNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi 214 (395)
T KOG0930|consen 136 TDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCL-CNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFI 214 (395)
T ss_pred ccchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhc-cCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHhhhCcccccCCCCc
Q 000634 654 RNNRGINGGKDLPREYLSELFHSIASNAISVFGQSGQ 690 (1380)
Q Consensus 654 ~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~~~~~~~ 690 (1380)
.++||+|.|.|+|.|.|.++|++|+++|+++|++.+.
T Consensus 215 ~MNrgineggdlpee~LrnlyeSi~~epFkIPeddgn 251 (395)
T KOG0930|consen 215 AMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGN 251 (395)
T ss_pred HHhhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCC
Confidence 9999999999999999999999999999999999775
No 7
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=2.2e-48 Score=416.74 Aligned_cols=184 Identities=51% Similarity=0.869 Sum_probs=178.5
Q ss_pred hhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCCCC
Q 000634 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGM 576 (1380)
Q Consensus 497 ~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~ 576 (1380)
+|+.+..|+.+||.+|++||+||++++++++ .+|++||+||+.+++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~ 79 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLED-DSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGL 79 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCC-CCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCC
Confidence 3678899999999999999999999999953 389999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCCcC-CCChHHHHHHHHHHhhccCCCccccCCCCHHHHHHh
Q 000634 577 TLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFV-AKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRN 655 (1380)
Q Consensus 577 ~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~-~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~n 655 (1380)
+||+|||.||.+|+||||+|+||||+|+||++||+ +||+.+. ++|++|+|+||+||||||+|||++++|||+++|++|
T Consensus 80 ~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~-~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~ 158 (185)
T cd00171 80 RLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCE-CNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKN 158 (185)
T ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-HCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999 8999997 999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCHHHHHHHHHHhhhCcc
Q 000634 656 NRGINGGKDLPREYLSELFHSIASNAI 682 (1380)
Q Consensus 656 ~rg~~~g~d~~~~~L~~iY~~I~~~~i 682 (1380)
++|+++|+++|+++|++||++|+.+||
T Consensus 159 ~~~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 159 LRGINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986
No 8
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.7e-48 Score=420.79 Aligned_cols=187 Identities=51% Similarity=0.895 Sum_probs=170.6
Q ss_pred HHhhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCC
Q 000634 495 KAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFA 574 (1380)
Q Consensus 495 k~~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~ 574 (1380)
|++|+.+.+|+.+||.+|++||+||+++|+++.+.+|++||+||+.+++|||++||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 67899999999999999999999999999995566999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCC--CcCCCChHHHHHHHHHHhhccCCCccccCCCCHHHH
Q 000634 575 GMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE--IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEF 652 (1380)
Q Consensus 575 ~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~--~~~~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F 652 (1380)
|+++++|||.||.+|+||||+|+|||||+.||++||+ +||+ .|.++|+||+|+||+||||||+|||++++|||+++|
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~-~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~F 160 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYE-CNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDF 160 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHH-HTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHH-hCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHH
Confidence 9999999999999999999999999999999999999 8885 899999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCHHHHHHHHHHhhhCcc
Q 000634 653 IRNNRGINGGKDLPREYLSELFHSIASNAI 682 (1380)
Q Consensus 653 ~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i 682 (1380)
++|++|+++|.++|+++|++||++|+.+||
T Consensus 161 i~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 161 IKNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1.2e-47 Score=412.43 Aligned_cols=184 Identities=50% Similarity=0.839 Sum_probs=178.7
Q ss_pred hhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCCCC
Q 000634 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGM 576 (1380)
Q Consensus 497 ~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~ 576 (1380)
+|+.+.+|+.+||.+|++||+||+++|+++. .+|++||+||+.++++||++||+|||+++++|.+||++|++.|||+|+
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~ 80 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAK-DDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAK 80 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCC-CCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCC
Confidence 4678899999999999999999999999985 389999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCCcC--CCChHHHHHHHHHHhhccCCCccccCCCCHHHHHH
Q 000634 577 TLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFV--AKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIR 654 (1380)
Q Consensus 577 ~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~~~--~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~ 654 (1380)
+||+|||.||..|+||||+|+||||||+||++||+ +||+.+. |+|++|+++||+||||||+|||++|+|||+++|++
T Consensus 81 ~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~-~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~ 159 (187)
T smart00222 81 DLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCE-CNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIK 159 (187)
T ss_pred cHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHH-HCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999 8999887 99999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhhCcc
Q 000634 655 NNRGINGGKDLPREYLSELFHSIASNAI 682 (1380)
Q Consensus 655 n~rg~~~g~d~~~~~L~~iY~~I~~~~i 682 (1380)
|++|+++|.++|+++|++||++|+.+||
T Consensus 160 ~~~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 160 NVRGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-46 Score=416.33 Aligned_cols=191 Identities=36% Similarity=0.695 Sum_probs=183.3
Q ss_pred hhhHHHHHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHhhcCCChHHHhhhccCC-hhhhHHHHHHHHhccCCCC
Q 000634 497 QKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDA-DEFHIQVLKEFTETFEFAG 575 (1380)
Q Consensus 497 ~K~~l~~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~~~~l~k~~igeyL~~~-~~~~~~vL~~f~~~fdf~~ 575 (1380)
+|+....|...||+||.+||+||++.||+++ +|..||+||.+..||+|.|||||||+. ++||..||+|+++.+||++
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~d--tPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfss 274 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPD--TPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSS 274 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCC--CchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhcccc
Confidence 4566778999999999999999999999987 899999999999999999999999985 6899999999999999999
Q ss_pred CChHHHHHHHhccccCCCchhHHHHHHHHHHHHHhhhcCCCC---cCCCChHHHHHHHHHHhhccCCCcccc--CCCCHH
Q 000634 576 MTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEI---FVAKDSVYIFCYSLIMLNTDQHNPQVK--KKMTEE 650 (1380)
Q Consensus 576 ~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~~~~~~~~---~~~~d~~~~l~ysiimLntdlhn~~vk--~~mt~~ 650 (1380)
|.+|+|||+|...||+|||||+|||++|+||.|||. |||.+ |.|.|++|+|||||||||||+|+|||| +||+.+
T Consensus 275 melDeALRKfqahirvqgEAqKveRlIeAFsqrYc~-cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~le 353 (627)
T KOG0931|consen 275 MELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCK-CNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLE 353 (627)
T ss_pred chHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhc-cCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHH
Confidence 999999999999999999999999999999999999 89974 889999999999999999999999999 899999
Q ss_pred HHHHhhccCCCCCCCCHHHHHHHHHHhhhCcccccCCCCc
Q 000634 651 EFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSGQ 690 (1380)
Q Consensus 651 ~F~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~~~~~~~ 690 (1380)
|||||+||+++|.|+|+++|..||++|++.|++..+||..
T Consensus 354 DFikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVs 393 (627)
T KOG0931|consen 354 DFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVS 393 (627)
T ss_pred HHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHH
Confidence 9999999999999999999999999999999999998763
No 11
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=1.1e-29 Score=270.30 Aligned_cols=161 Identities=30% Similarity=0.540 Sum_probs=144.5
Q ss_pred CcchhhHHHHHHHHHhhcc-cccccC-CCCCCCccchhhHHHHHHHHHHHHhcccccC---CchHHHHHHHHHHHHHHHH
Q 000634 252 GYGIRSAVDIFHFLCSLLN-VVELVE-GEGSRTSDVDVQLFALVLINSAIELSGDAIG---KHPKLLRMVQDDLFHHLIH 326 (1380)
Q Consensus 252 ~~g~~~~~~lf~~Lc~L~~-~~~~~~-~~~~~~~~~~~~~~~L~Li~~~le~~g~~~~---~~p~l~~li~~~Lc~~Ll~ 326 (1380)
.|+.+||+++||+||+|+. +.++.. ++ +.+++..+|++|||||+++|+++|+.|. +||++.+++|++||++|++
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~-~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~ 80 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPD-FLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLK 80 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHH
Confidence 4788999999999999983 222211 11 1346789999999999999999999999 6669999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhcCchHHHHHhHhcCC
Q 000634 327 YGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAASGN-SHQLQEVALEGIINFCRQPTFLIEVYVNYDC 405 (1380)
Q Consensus 327 ~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~~~~-~~~~r~l~LE~l~~l~~~p~~~~~ly~nYDC 405 (1380)
++.++.+++|..++|++++|+.++|.+||.|+|+||+.+++++++++. ++|||+++||+++++|++|++++|+|+||||
T Consensus 81 ~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 81 NLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYDC 160 (168)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCC
Confidence 999988999999999999999999999999999999999998988444 7899999999999999999999999999999
Q ss_pred CCCCccHH
Q 000634 406 DPLCRNVI 413 (1380)
Q Consensus 406 d~~~~nlf 413 (1380)
|.+++|||
T Consensus 161 d~~~~nif 168 (168)
T PF12783_consen 161 DLNSKNIF 168 (168)
T ss_pred CCCCCCCC
Confidence 99999986
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3e-28 Score=278.99 Aligned_cols=153 Identities=38% Similarity=0.634 Sum_probs=148.3
Q ss_pred HHHHHHHHHhhcCCChHHHhhhccCChhhhHHHHHHHHhccCCCCCChHHHHHHHhccccCCCchhHHHHHHHHHHHHHh
Q 000634 531 PKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFF 610 (1380)
Q Consensus 531 p~~ia~fl~~~~~l~k~~igeyL~~~~~~~~~vL~~f~~~fdf~~~~~~~aLR~fl~~frlPgEaq~Idri~e~Fa~~y~ 610 (1380)
...+|+=||.-.|.-|..++.+||+.++|...|..+|+..|+|.|+++|.|||.||..|-|-||.|..+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcCCCChHHHHHHHHHHhhccCCCccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhhCcccc
Q 000634 611 DQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISV 684 (1380)
Q Consensus 611 ~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~vk~~mt~~~F~~n~rg~~~g~d~~~~~L~~iY~~I~~~~i~~ 684 (1380)
+ |||++|.+.|.|+.|++++++||||||.+|+.+|||.+|||-|+.|+|+|.|||+|+|..+|++||++.+..
T Consensus 387 ~-CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklew 459 (774)
T KOG0932|consen 387 Q-CNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEW 459 (774)
T ss_pred c-cCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhh
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999996654
No 13
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.5e-07 Score=108.82 Aligned_cols=367 Identities=15% Similarity=0.186 Sum_probs=239.7
Q ss_pred HHHHhhhhhhhhhhc-CCCCHHHHHHHHHHHHHHhcccC------Cc-cC--CC----CccccchhhHHHHHHHHHhhc-
Q 000634 913 KVIKQCQIGNIFSNS-TNLPLEALQNLGRSLIFAAAGKG------QK-FS--TP----VEEEETVGFCWDLIIAIAIAN- 977 (1380)
Q Consensus 913 ~~i~~~~i~~LF~~s-~~L~~esl~~fv~AL~~ls~~~~------~~-~~--~s----~~~e~~~~F~Leklv~V~l~N- 977 (1380)
-|+.....|++|+.. ..|..-+|..|.-++...|.... ++ .. .+ ...+..+...|-++..-.++-
T Consensus 843 ictLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiiril 922 (1777)
T KOG1846|consen 843 ICTLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRIL 922 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 466678899999986 57999999999999999884221 00 00 00 011222334555555522221
Q ss_pred hh--h----hhhhHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHHHHHHhhccC-CCc-chhHHHHHhHHHHhccCHH
Q 000634 978 NN--R----FQAFWPSFHDYLLLV-TQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQ-SDK-LPEELIFKSINLMWKLDKE 1048 (1380)
Q Consensus 978 ~~--R----i~~~W~~v~~hL~~v-~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~-~e~-l~~~ll~~sL~~L~~l~~~ 1048 (1380)
++ | .+..|+.|..||.++ .|+... .+...|+-.+..+..++|-... .+. .-++-+|.||+..+.+..
T Consensus 923 rhkaRPLlHqMfcwpLVaaHfVeasaCdkEr---hvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclEl- 998 (1777)
T KOG1846|consen 923 RHKARPLLHQMFCWPLVAAHFVEASACDKER---HVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLEL- 998 (1777)
T ss_pred HhcccchhHHHHHHhhhhHHHHhHHhhhhhh---HHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHh-
Confidence 22 3 357999999999998 577654 3566788888888888887211 112 246777899999887653
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCCCCc---------------hhHHHHHHHHHHhh-CCCcc
Q 000634 1049 ILDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGRHPD---------------THEQAVETLIMLIS-DGTHI 1112 (1380)
Q Consensus 1049 ~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~~~~---------------~~~~afe~L~~Ivs-d~~~l 1112 (1380)
+..++.+|.+..+.++++.++..|.| ||+++|+-|.+++...+ --.-+|+..+...+ |...+
T Consensus 999 CdEdtkdQflsSigeLVescadkIgS--GWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipV 1076 (1777)
T KOG1846|consen 999 CDEDTKDQFLSSIGELVESCADKIGS--GWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPV 1076 (1777)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHh
Confidence 56789999999999999999999999 99999999999984322 11246888876654 66677
Q ss_pred ChhhHHHHHHHHHHhHhccC--C--------------CccchhhHhHhhhhhHHHHHHHhhhccc---ccC---Cc----
Q 000634 1113 SKATYAYCIDCAFSFVALKN--S--------------PLEKNLKILDLLSDSVNLLIQWYKNAWS---ESG---NN---- 1166 (1380)
Q Consensus 1113 t~~nf~~cV~~l~~F~~~~~--~--------------~~n~sl~ai~ll~~~~~~~~~~~~~~~~---~~g---~~---- 1166 (1380)
-......||-|+-+|..... + ..+.-+.|+++|.++...+.+.++.--. ..| ..
T Consensus 1077 fanaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkc 1156 (1777)
T KOG1846|consen 1077 FANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKC 1156 (1777)
T ss_pred HHHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHH
Confidence 78888999999999987532 1 1122357899988776555443321000 000 00
Q ss_pred --cccccCC----CCCchhhhhccCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHH
Q 000634 1167 --YSIASST----STSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINC 1240 (1380)
Q Consensus 1167 --~s~~s~~----~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~ 1240 (1380)
.+-.+.. +-....-+.+.+..-.-..+|+.+++.+...-.+.-|.-...-+..+++.|.--.-.-+++..--.|
T Consensus 1157 ldqsamdeDgIEsphgpfpvledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgva 1236 (1777)
T KOG1846|consen 1157 LDQSAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVA 1236 (1777)
T ss_pred HhhhhcccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccch
Confidence 0000000 0000000111111223567999999999888888888888888888998887322334566667788
Q ss_pred HHHHHHHhHHHHHHHHHHhhhccchhhhhhchHH---HHHHHHHHHHHHHHHHHHHh
Q 000634 1241 FNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEG---TLKNAMELLANVFLQFIKQI 1294 (1380)
Q Consensus 1241 f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~E---T~v~al~llskvFl~~l~~L 1294 (1380)
...+++|.++...... .. |..-|+- -..+|..+-|.+...++...
T Consensus 1237 msaliLPvmqkWiRRl----dk-----desywdmakaifKhaIGaccelVidhiele 1284 (1777)
T KOG1846|consen 1237 MSALILPVMQKWIRRL----DK-----DESYWDMAKAIFKHAIGACCELVIDHIELE 1284 (1777)
T ss_pred hhHHHHHHHHHHHHHh----ch-----hhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999987542 11 2233433 45788888898888888754
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=98.81 E-value=3.5e-09 Score=99.75 Aligned_cols=71 Identities=15% Similarity=0.359 Sum_probs=62.3
Q ss_pred chhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCC--CCchhHHHHHHHHHH
Q 000634 1030 LPEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGR--HPDTHEQAVETLIML 1105 (1380)
Q Consensus 1030 l~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~--~~~~~~~afe~L~~I 1105 (1380)
.|.++| +||+.++.-. ...+|++.+++|+.+|++++|++|+| ||++||++|+.++. +.+.++.||+++++|
T Consensus 14 fQ~~fL-~Pf~~i~~~~--~~~~vre~il~ci~qil~~~~~~i~S--GW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 14 FQKDFL-KPFEYIMSNN--PSIDVRELILECILQILQSRGENIKS--GWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHH-HHHHHHHhcc--CcHHHHHHHHHHHHHHHHHhHHHHHh--ccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 367777 9999997543 34689999999999999999999999 99999999999997 567899999999875
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.73 E-value=17 Score=52.02 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhccCCCc----chhHHHHHhHHHHhc------c------
Q 000634 982 QAFWPSFHDYLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSDK----LPEELIFKSINLMWK------L------ 1045 (1380)
Q Consensus 982 ~~~W~~v~~hL~~v~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~~e~----l~~~ll~~sL~~L~~------l------ 1045 (1380)
..+|=++..-|..++..... .++.+|+..|.++....-. ....+ +-+.++|.-|..+.. .
T Consensus 1342 ~~lW~pLL~~Ls~l~~D~Rl---EVR~~ALqtLF~iL~~yG~-~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~ 1417 (1780)
T PLN03076 1342 LYFWFPLLAGLSELSFDPRP---EIRKSALQVLFDTLRNHGH-LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQ 1417 (1780)
T ss_pred HHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 35898888889888765433 6999999999998644322 11111 224455332333221 0
Q ss_pred ---------CHHH-HHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCC--CCchhHHHHHHHHHHhhCC-Ccc
Q 000634 1046 ---------DKEI-LDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGR--HPDTHEQAVETLIMLISDG-THI 1112 (1380)
Q Consensus 1046 ---------~~~~-~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~--~~~~~~~afe~L~~Ivsd~-~~l 1112 (1380)
+.++ ..+..-+.++++..+.-.+=..+.. --+.++.+|..... +...++.|..||+.++... ...
T Consensus 1418 ~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~--~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F 1495 (1780)
T PLN03076 1418 GVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP--LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLF 1495 (1780)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccC
Confidence 0000 1234455566666666555555544 45556666655443 4457899999999777655 568
Q ss_pred ChhhHHHHHHHHHHhHhcc
Q 000634 1113 SKATYAYCIDCAFSFVALK 1131 (1380)
Q Consensus 1113 t~~nf~~cV~~l~~F~~~~ 1131 (1380)
+.++-..+++++.+-....
T Consensus 1496 ~~~~W~~i~~~~~~lf~~T 1514 (1780)
T PLN03076 1496 SDEKWLEVVLSLKEAANAT 1514 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999988766653
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=84.49 E-value=1.6e+02 Score=39.35 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=131.7
Q ss_pred chHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCc----ChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHH
Q 000634 92 YLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTP----GVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQV 167 (1380)
Q Consensus 92 ~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~----~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~ 167 (1380)
+..|...++..+ -.+|++=||--.++|+.+ |.+..| ++..-+..+.++ +--|++++|...+ |-.+-.-+
T Consensus 521 Ls~~v~~aV~d~--fyKisaEAL~v~~~lvkv--irpl~~~~~~d~~~~v~~m~~~-tl~rL~a~d~Dqe--VkeraIsc 593 (1233)
T KOG1824|consen 521 LSPPVVAAVGDP--FYKISAEALLVCQQLVKV--IRPLQPPSSFDASPYVKTMYDC-TLQRLKATDSDQE--VKERAISC 593 (1233)
T ss_pred hhhHHHHHhcCc--hHhhhHHHHHHHHHHHHH--hcccCCCccCCCChhHHHHHHH-HHHHHhcccccHH--HHHHHHHH
Confidence 444555566544 579999999999999986 444443 223344555443 3346777777665 88888888
Q ss_pred HHHHHcccCccccCchHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccCCCCCCCCCCccccC
Q 000634 168 LIAIMRHRASILLTDEAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMDA 247 (1380)
Q Consensus 168 L~~ll~~~~g~~l~~~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~~~~~~~~~~~~~~~ 247 (1380)
+-.++.+ .|+.++++.=.-..-.|=|+ ++|+.|-+|..++..|+...- .++
T Consensus 594 mgq~i~~-fgD~l~~eL~~~L~il~eRl------~nEiTRl~AvkAlt~Ia~S~l----~i~------------------ 644 (1233)
T KOG1824|consen 594 MGQIIAN-FGDFLGNELPRTLPILLERL------GNEITRLTAVKALTLIAMSPL----DID------------------ 644 (1233)
T ss_pred HHHHHHH-HhhhhhhhhHHHHHHHHHHH------hchhHHHHHHHHHHHHHhccc----eee------------------
Confidence 8777776 46666666544333444444 589999999998887754432 111
Q ss_pred ccCCCcchhhHHHHHHHHHhhcccccccCCCCCCCccchhhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHh
Q 000634 248 NLGSGYGIRSAVDIFHFLCSLLNVVELVEGEGSRTSDVDVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHY 327 (1380)
Q Consensus 248 ~~~~~~g~~~~~~lf~~Lc~L~~~~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~ 327 (1380)
..|-+-.-..++..|+|+-.. ..|.-.|..++..+++.++.+. ++++..+-..+-+.+.-
T Consensus 645 --l~~~l~~il~~l~~flrK~~r---------------~lr~~~l~a~~~L~~~~~~~~~--~~~~e~vL~el~~Lise- 704 (1233)
T KOG1824|consen 645 --LSPVLTEILPELASFLRKNQR---------------ALRLATLTALDKLVKNYSDSIP--AELLEAVLVELPPLISE- 704 (1233)
T ss_pred --hhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHhhhhhhH-
Confidence 112232334567777776431 2355566777888888888876 56666666665554432
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000634 328 GARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVV 366 (1380)
Q Consensus 328 ~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~ 366 (1380)
+...+-+.++.+...++...-..|-.--+.++..++
T Consensus 705 ---sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii 740 (1233)
T KOG1824|consen 705 ---SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEII 740 (1233)
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHH
Confidence 334455555555555555544444444555666554
No 17
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=78.04 E-value=3.4 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHhh
Q 000634 1197 LGEALRKTSLARREEIRNHAVLALQKCFT 1225 (1380)
Q Consensus 1197 Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll 1225 (1380)
|+..+.+++.||-++||..|+.+|.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35566678889999999999999988754
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.49 E-value=1.2e+02 Score=33.75 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000634 286 DVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFV 365 (1380)
Q Consensus 286 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l 365 (1380)
..|.-||+-|..++..+ ..-...+.+...++ .+...+...+.+....+...+|.++..|+..++.+++..++.++..+
T Consensus 22 ~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 56889999999999877 22234577778888 66677777776666778889999999999999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhcCch
Q 000634 366 VLRVAASGNSHQLQEVALEGIINFCRQPT 394 (1380)
Q Consensus 366 ~~~i~~~~~~~~~r~l~LE~l~~l~~~p~ 394 (1380)
+.++.++ ....++-+.++|..++..-+
T Consensus 100 l~~~~~~--~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 100 LKKLGDS--KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHGGG-----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHccc--cHHHHHHHHHHHHHHHHHCC
Confidence 8776543 35678888888887776544
No 19
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=3.4e+02 Score=38.00 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhh
Q 000634 1190 AVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTL 1226 (1380)
Q Consensus 1190 ~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~ 1226 (1380)
..+.|.-+|+=|-++-+|.-+|+-.+||..+|-.+.+
T Consensus 1097 f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1097 FLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999998875
No 20
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=75.87 E-value=94 Score=34.54 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=103.8
Q ss_pred CcchHHHHHHHHHHHHccCCCCCCC-cChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHcccCccccCchH
Q 000634 106 PAAATGVALSAILKILKLEIFDEKT-PGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTDEA 184 (1380)
Q Consensus 106 ~~~it~~AL~sl~k~l~~~~i~~~~-~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~~ll~~~~g~~l~~~~ 184 (1380)
+=...--||.-|.+++..+ ++... +.....+..++.++..|. +|..+= |.-.-++++..+...- |..+ +..
T Consensus 20 ~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l---~d~Rs~--v~~~A~~~l~~l~~~l-~~~~-~~~ 91 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQL---SDLRSK--VSKTACQLLSDLARQL-GSHF-EPY 91 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S----HH-----HHHHHHHHHHHHHHHH-GGGG-HHH
T ss_pred CHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHH---hhhHHH--HHHHHHHHHHHHHHHH-hHhH-HHH
Confidence 3455567899999999998 44333 334456666667777774 233332 5566677777766653 3322 233
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccCCCCCCCCCCccccCccCCCcchhhHHHHHHH
Q 000634 185 VCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMDANLGSGYGIRSAVDIFHF 264 (1380)
Q Consensus 185 v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lf~~ 264 (1380)
+-.++..-+..+- +.+..++.+|..||..|+..+ +|+ +.+ ++..
T Consensus 92 ~~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~------------------------------~~~-~~~--~~~~ 135 (228)
T PF12348_consen 92 ADILLPPLLKKLG---DSKKFIREAANNALDAIIESC------------------------------SYS-PKI--LLEI 135 (228)
T ss_dssp HHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-------------------------------H---HH--HHHH
T ss_pred HHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHC------------------------------CcH-HHH--HHHH
Confidence 4555666666654 456899999999999985421 100 111 1333
Q ss_pred HHhhcccccccCCCCCCCccchhhHHHHHHHHHHHHhcc---cccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Q 000634 265 LCSLLNVVELVEGEGSRTSDVDVQLFALVLINSAIELSG---DAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICS 341 (1380)
Q Consensus 265 Lc~L~~~~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~g---~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lr 341 (1380)
+....+. -...+|..+++.+..+++..+ +.+..+. .-+.+.+.+.+.+...++.+=..+-+
T Consensus 136 l~~~~~~-----------Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~-----~~~~l~~~l~~~l~D~~~~VR~~Ar~ 199 (228)
T PF12348_consen 136 LSQGLKS-----------KNPQVREECAEWLAIILEKWGSDSSVLQKSA-----FLKQLVKALVKLLSDADPEVREAARE 199 (228)
T ss_dssp HHHHTT------------S-HHHHHHHHHHHHHHHTT-----GGG--HH-----HHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred HHHHHhC-----------CCHHHHHHHHHHHHHHHHHccchHhhhcccc-----hHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3333221 113688999999999999988 3443222 12678888888888888877777777
Q ss_pred HHHHHHHHHHH
Q 000634 342 TVLNIYHFLRR 352 (1380)
Q Consensus 342 i~~~L~~~lr~ 352 (1380)
++..++..+..
T Consensus 200 ~~~~l~~~~~~ 210 (228)
T PF12348_consen 200 CLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHH-H
T ss_pred HHHHHHHHCCH
Confidence 77766655543
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=2.6e+02 Score=38.26 Aligned_cols=257 Identities=11% Similarity=0.059 Sum_probs=156.6
Q ss_pred cchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCC-cChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHH
Q 000634 91 IYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKT-PGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLI 169 (1380)
Q Consensus 91 ~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~-~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~ 169 (1380)
+++.=|...+..+ +.+|-..|+.++.-|+.+.=.+... +.....+..++..+..+- +..|+...--+|.+|-
T Consensus 159 ~l~~lf~q~~~d~--s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i-----~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDP--SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI-----QDGDDDAAKSALEALI 231 (1075)
T ss_pred HHHHHHHHhccCC--cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh-----hccchHHHHHHHHHHH
Confidence 3444455556655 4458888999998888884322211 123345666666666652 3344445666788888
Q ss_pred HHHcccCccccCchHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccCCCCCCCCCCccccCcc
Q 000634 170 AIMRHRASILLTDEAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMDANL 249 (1380)
Q Consensus 170 ~ll~~~~g~~l~~~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1380)
.++.+. +. +-+..+.++++.|..++.+. .+.+..|..|=.-|.-.... -+. +. ..
T Consensus 232 El~e~~-pk-~l~~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~----Ap~---~~---------------k~ 286 (1075)
T KOG2171|consen 232 ELLESE-PK-LLRPHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVSLSEY----APA---MC---------------KK 286 (1075)
T ss_pred HHHhhc-hH-HHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHh----hHH---Hh---------------hh
Confidence 887774 34 67788999999999999875 67777777765544433322 110 00 01
Q ss_pred CCCcchhhHHHHHHHHHhhcccccccCCCCC---CCccchhhHHHHHHHHHH-HHhcccccCCchHHHHHHHHHHHHHHH
Q 000634 250 GSGYGIRSAVDIFHFLCSLLNVVELVEGEGS---RTSDVDVQLFALVLINSA-IELSGDAIGKHPKLLRMVQDDLFHHLI 325 (1380)
Q Consensus 250 ~~~~g~~~~~~lf~~Lc~L~~~~~~~~~~~~---~~~~~~~~~~~L~Li~~~-le~~g~~~~~~p~l~~li~~~Lc~~Ll 325 (1380)
..+||-+-..-++..+|-+.+. ..|.+.- ..-.+.+..+|.+.|..+ +..+|..+. | .+++++-
T Consensus 287 ~~~~~~~lv~~~l~~mte~~~D--~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p--------~~~~~l~ 354 (1075)
T KOG2171|consen 287 LALLGHTLVPVLLAMMTEEEDD--DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL--P--------PLFEALE 354 (1075)
T ss_pred chhhhccHHHHHHHhcCCcccc--hhhccccccccccccCcHHHHHHHHHHHHhcCChhheh--H--------HHHHHHH
Confidence 1235544444445555544322 1221100 000134667888777764 444544432 2 4556666
Q ss_pred HhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCc
Q 000634 326 HYGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAASGNSHQLQEVALEGIINFCRQP 393 (1380)
Q Consensus 326 ~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~~~~~~~~r~l~LE~l~~l~~~p 393 (1380)
+.++|++..-=...+..+..+.....++++.+++-.+++++.-+ .++.+--|..++..+.++..|-
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--NDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHhhhhhh
Confidence 77777775444456777778888999999999999999877544 3556778888888888877653
No 22
>PTZ00429 beta-adaptin; Provisional
Probab=61.30 E-value=5.3e+02 Score=34.47 Aligned_cols=123 Identities=12% Similarity=0.205 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000634 290 FALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRV 369 (1380)
Q Consensus 290 ~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i 369 (1380)
..|+-+..++...... .|.+...+-..+-+.|+.+. ++.+-+=-+.+|-+..+.......+..++..||-..
T Consensus 272 VVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~---- 343 (746)
T PTZ00429 272 VVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY---- 343 (746)
T ss_pred HHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc----
Confidence 4445555554433221 24544444444555566554 333334345677777776666667777677665331
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCch---HHHHHhHhcCCCCCCccHHHHHHHHHHhhcC
Q 000634 370 AASGNSHQLQEVALEGIINFCRQPT---FLIEVYVNYDCDPLCRNVIEEIGKLLCKHSF 425 (1380)
Q Consensus 370 ~~~~~~~~~r~l~LE~l~~l~~~p~---~~~~ly~nYDCd~~~~nlfe~lv~~L~k~a~ 425 (1380)
+++ ..-|...||+|..++..-+ ++.||.. |=.+. ...+-.+.|..+.+.|.
T Consensus 344 --~Dp-~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~-D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 344 --SDP-PFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGV-DMVFVVEVVRAIASLAI 397 (746)
T ss_pred --CCc-HHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcC-CHHHHHHHHHHHHHHHH
Confidence 233 3479999999999987654 4555532 22222 23566777888877763
No 23
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.45 E-value=75 Score=34.60 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCcCCCccCCcccchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCcChHHHHHHHHHHHhhccccCCCCCchh
Q 000634 79 NPQQEWRTVDPSIYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISED 158 (1380)
Q Consensus 79 ~~~~~~~~~~~~~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~crfe~td~~~De 158 (1380)
.|..+++.+|-..||-=|++..+. |.-|-.-+|..++..++..+.- ..+...+.+++-.+..+. ..-|.
T Consensus 26 ~W~~~~e~Ldy~~~Lpif~dGL~E--t~~Py~flA~~g~~dll~~~~~----~kilPvlPqLI~plk~AL-----~tr~~ 94 (183)
T PF10274_consen 26 QWKVDPEKLDYHHYLPIFFDGLRE--TEHPYRFLARQGIKDLLERGGG----EKILPVLPQLIIPLKRAL-----NTRDP 94 (183)
T ss_pred EEecChhhcchhhHHHHHHhhhhc--cCccHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHH-----hCCCH
Confidence 455577889999999999999994 4679999999999999998221 123456777777777664 23455
Q ss_pred HHHHHHHHHHHHHHccc
Q 000634 159 AVMMRILQVLIAIMRHR 175 (1380)
Q Consensus 159 ~VllkILq~L~~ll~~~ 175 (1380)
.|.-..|++|..++++.
T Consensus 95 ~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 95 EVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 68899999999998774
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=56.91 E-value=4.9e+02 Score=32.69 Aligned_cols=247 Identities=17% Similarity=0.248 Sum_probs=132.4
Q ss_pred chHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCcChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHHHH
Q 000634 92 YLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIAI 171 (1380)
Q Consensus 92 ~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~~l 171 (1380)
....+..-+.++ +..+.+.||.++.++-.. +.++.+...|..+. +|+.. .|.-|-+-++..+
T Consensus 80 ~~n~l~kdl~~~--n~~~~~lAL~~l~~i~~~-----------~~~~~l~~~v~~ll---~~~~~--~VRk~A~~~l~~i 141 (526)
T PF01602_consen 80 IINSLQKDLNSP--NPYIRGLALRTLSNIRTP-----------EMAEPLIPDVIKLL---SDPSP--YVRKKAALALLKI 141 (526)
T ss_dssp HHHHHHHHHCSS--SHHHHHHHHHHHHHH-SH-----------HHHHHHHHHHHHHH---HSSSH--HHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CHHHHHHHHhhhhhhccc-----------chhhHHHHHHHHHh---cCCch--HHHHHHHHHHHHH
Confidence 445566667766 789999999999997733 34455556666554 23323 5777777777777
Q ss_pred HcccCccccCchHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHccCCccccccCCCCCCCCCCccccCccCC
Q 000634 172 MRHRASILLTDEAVCTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMDANLGS 251 (1380)
Q Consensus 172 l~~~~g~~l~~~~v~~~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~v~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1380)
.+.. .+.+.+. +.+. +.++.. ..++.++.+|-..+.++ +... .
T Consensus 142 ~~~~-p~~~~~~-~~~~---l~~lL~---d~~~~V~~~a~~~l~~i------~~~~-----------------------~ 184 (526)
T PF01602_consen 142 YRKD-PDLVEDE-LIPK---LKQLLS---DKDPSVVSAALSLLSEI------KCND-----------------------D 184 (526)
T ss_dssp HHHC-HCCHHGG-HHHH---HHHHTT---HSSHHHHHHHHHHHHHH------HCTH-----------------------H
T ss_pred hccC-HHHHHHH-HHHH---Hhhhcc---CCcchhHHHHHHHHHHH------ccCc-----------------------c
Confidence 7653 2334443 4333 444432 46788888888777777 2110 0
Q ss_pred CcchhhHHHHHHHHHhhcccccccCCCCCCCccchhhHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhccC
Q 000634 252 GYGIRSAVDIFHFLCSLLNVVELVEGEGSRTSDVDVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARS 331 (1380)
Q Consensus 252 ~~g~~~~~~lf~~Lc~L~~~~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~ 331 (1380)
.|. .....+++.||.++.. ++ +-.++-.++++. ......+....- ..+...+...+.+.
T Consensus 185 ~~~-~~~~~~~~~L~~~l~~-----~~------~~~q~~il~~l~-------~~~~~~~~~~~~--~~~i~~l~~~l~s~ 243 (526)
T PF01602_consen 185 SYK-SLIPKLIRILCQLLSD-----PD------PWLQIKILRLLR-------RYAPMEPEDADK--NRIIEPLLNLLQSS 243 (526)
T ss_dssp HHT-THHHHHHHHHHHHHTC-----CS------HHHHHHHHHHHT-------TSTSSSHHHHHH--HHHHHHHHHHHHHH
T ss_pred hhh-hhHHHHHHHhhhcccc-----cc------hHHHHHHHHHHH-------hcccCChhhhhH--HHHHHHHHHHhhcc
Confidence 011 3445677778877521 11 122333333333 222223333211 45556666666555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCc-hH-----HHHHhHhcCC
Q 000634 332 SPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAASGNSHQLQEVALEGIINFCRQP-TF-----LIEVYVNYDC 405 (1380)
Q Consensus 332 ~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~~~~~~~~r~l~LE~l~~l~~~p-~~-----~~~ly~nYDC 405 (1380)
++.+.--+++.+..+..... -+..+...+. +++. .+.+..|.++|+.|..++... .. +.-.|..||.
T Consensus 244 ~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~-~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~ 316 (526)
T PF01602_consen 244 SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLI-KLLS-SSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHH-HHHT-SSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHH-HHhh-cccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCC
Confidence 55555445555553322221 1333344333 3443 556779999999999887543 22 2333556666
Q ss_pred CCCCccHHHHHHHHHHhhc
Q 000634 406 DPLCRNVIEEIGKLLCKHS 424 (1380)
Q Consensus 406 d~~~~nlfe~lv~~L~k~a 424 (1380)
|.+ |=..-++.|.+.+
T Consensus 317 d~~---Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 317 DPS---IRKKALDLLYKLA 332 (526)
T ss_dssp SHH---HHHHHHHHHHHH-
T ss_pred Chh---HHHHHHHHHhhcc
Confidence 644 3344455555554
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=54.98 E-value=5.5e+02 Score=32.63 Aligned_cols=263 Identities=17% Similarity=0.191 Sum_probs=130.2
Q ss_pred cHHHHH--HHHHHHHhcCCcCCCccCCcccchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCC--CcChHHHHHH
Q 000634 64 SAVVQS--LKSLRSLIFNPQQEWRTVDPSIYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEK--TPGVKDAINI 139 (1380)
Q Consensus 64 ~~l~~~--~~~Lr~~l~~~~~~~~~~~~~~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~--~~~~~~a~~~ 139 (1380)
+|-++. +++|++.+.....-...+....++...+..++.++ ..+...|..+|.++..+...... ++ ..+..
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d--~~Va~~A~~~L~~l~~~~~~~~~l~~~---~~~~~ 164 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD--LSVAKAAIKALKKLASHPEGLEQLFDS---NLLSK 164 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc--HHHHHHHHHHHHHHhCCchhHHHHhCc---chHHH
Confidence 344443 34555533332111334555667777888888775 48999999999999886421110 00 11233
Q ss_pred HHHHHhhccccCCCCCchhHHHHHHHHHHHHHHcccCccccCchHHHH--HHHHHHHHhhccCcccHHHHHHHHHHHHHH
Q 000634 140 VVTGITSCQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTDEAVCT--IVNTCFHVVQQSASRGDLLQRSARYTMHEL 217 (1380)
Q Consensus 140 i~~av~~crfe~td~~~De~VllkILq~L~~ll~~~~g~~l~~~~v~~--~l~~C~~l~~q~~~~s~~lr~tA~~tl~q~ 217 (1380)
+.+...+ .+++|.+|++.++..+..... ..+ +.+.+ ++....+-.. +...++|-+|-..+.+|
T Consensus 165 L~~l~~~---------~~~~vR~Rv~el~v~i~~~S~-~~~--~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 165 LKSLMSQ---------SSDIVRCRVYELLVEIASHSP-EAA--EAVVNSGLLDLLLKELD---SDDILVQLNALELLSEL 229 (503)
T ss_pred HHHHHhc---------cCHHHHHHHHHHHHHHHhcCH-HHH--HHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHH
Confidence 3332222 356799999999888764421 111 11111 3444444322 45678888888888887
Q ss_pred HHHHHccCCccccccCCCCCCCCCCccccCccCCCcchhhH--HHHHHHHHhhcccccccCCCCCCCccchhhHHHH-HH
Q 000634 218 IQIIFSRLPDIEVKSGEGSESDTEDVDMDANLGSGYGIRSA--VDIFHFLCSLLNVVELVEGEGSRTSDVDVQLFAL-VL 294 (1380)
Q Consensus 218 v~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~lf~~Lc~L~~~~~~~~~~~~~~~~~~~~~~~L-~L 294 (1380)
... +.|..-+ .-+|+.|+.++..... .+.. ..+-+-|. ..
T Consensus 230 a~~-------------------------------~~g~~yL~~~gi~~~L~~~l~~~~~-dp~~-----~~~~l~g~~~f 272 (503)
T PF10508_consen 230 AET-------------------------------PHGLQYLEQQGIFDKLSNLLQDSEE-DPRL-----SSLLLPGRMKF 272 (503)
T ss_pred HcC-------------------------------hhHHHHHHhCCHHHHHHHHHhcccc-CCcc-----cchhhhhHHHH
Confidence 420 1111111 1367777877754221 1100 01112222 11
Q ss_pred HHHHHHhc-ccccCCchHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHH
Q 000634 295 INSAIELS-GDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLNIYHFLRR--FI----RLQLEAFFGFVVL 367 (1380)
Q Consensus 295 i~~~le~~-g~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~--~L----k~qlE~fl~~l~~ 367 (1380)
...+.... ...+..+|.++ ..|+....+.++.....++-.+..+-.+-.. .| ...++.++..+..
T Consensus 273 ~g~la~~~~~~v~~~~p~~~--------~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFL--------ERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD 344 (503)
T ss_pred HHHHHhcChHHHHHHHHHHH--------HHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH
Confidence 11111111 11223344433 3445666666666666655555555433222 12 1123333333222
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHhcCc
Q 000634 368 RVAASGNSHQLQEVALEGIINFCRQP 393 (1380)
Q Consensus 368 ~i~~~~~~~~~r~l~LE~l~~l~~~p 393 (1380)
.+ ...+.+.|.-+|++|..++..+
T Consensus 345 ~~--~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 345 AI--KSGSTELKLRALHALASILTSG 368 (503)
T ss_pred Hh--cCCchHHHHHHHHHHHHHHhcC
Confidence 22 3456789999999999885443
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.69 E-value=6.1e+02 Score=32.19 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHHHHHHHHH
Q 000634 1193 LFIKLGEALRKTSL-ARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVDDLHEKMI 1257 (1380)
Q Consensus 1193 lW~~Ll~~La~lc~-d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~~L~~~~~ 1257 (1380)
+-..+|..|..+-. .|..-||+.|+=++..|-. | ....-..+++.-++|.|-++++...
T Consensus 318 i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G---~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 318 INSGALPVLSNLLSSSPKESIKKEACWTISNITA---G---NQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---C---CHHHHHHHHHcccHHHHHHHHhccc
Confidence 34556666666666 4555599999999999877 3 4567789999999999999987643
No 27
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.74 E-value=3.1e+02 Score=35.76 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhh
Q 000634 988 FHDYLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSDKLPEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIE 1067 (1380)
Q Consensus 988 v~~hL~~v~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~~e~l~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~ 1067 (1380)
+.+-+..+..|+.- +++.|||-.|.++..+ |.|.++.-+= +--+.|=..++ .|....+.-++++-..
T Consensus 145 La~Dv~tLL~sskp---YvRKkAIl~lykvFLk-----YPeAlr~~Fp-rL~EkLeDpDp----~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 145 LADDVFTLLNSSKP---YVRKKAILLLYKVFLK-----YPEALRPCFP-RLVEKLEDPDP----SVVSAAVSVICELARK 211 (877)
T ss_pred HHHHHHHHHhcCch---HHHHHHHHHHHHHHHh-----hhHhHhhhHH-HHHHhccCCCc----hHHHHHHHHHHHHHhh
Confidence 34444445555432 8999999999998654 3444544331 11122223333 3444556678888888
Q ss_pred CCCCcc------------cccChHHHHHHHhccCC----CC-----------------chhHHHHHHHHHHhhCC-CccC
Q 000634 1068 YPANLQ------------SAVGWKSVLHLLSVTGR----HP-----------------DTHEQAVETLIMLISDG-THIS 1113 (1380)
Q Consensus 1068 ~~~~l~------------s~~gW~~vf~iL~~~~~----~~-----------------~~~~~afe~L~~Ivsd~-~~lt 1113 (1380)
++.+.- |...|-. +.||...+. .| .+...-|||+..||.-. ..=.
T Consensus 212 nPknyL~LAP~ffkllttSsNNWmL-IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 212 NPQNYLQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred CCcccccccHHHHHHHhccCCCeeh-HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 887643 3334532 222222221 12 23456799999988642 1112
Q ss_pred hhh---HHHHHHHHHHhHhc
Q 000634 1114 KAT---YAYCIDCAFSFVAL 1130 (1380)
Q Consensus 1114 ~~n---f~~cV~~l~~F~~~ 1130 (1380)
+++ ...||.=|+.|.+-
T Consensus 291 ~d~~asiqLCvqKLr~fied 310 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIED 310 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhc
Confidence 334 47799999999885
No 28
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=43.61 E-value=7.6e+02 Score=30.99 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=69.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhchhhhhhhHHHHHHHHHHHhc--CCCCCcH
Q 000634 927 STNLPLEALQNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIANNNRFQAFWPSFHDYLLLVTQ--FPLFSPI 1004 (1380)
Q Consensus 927 s~~L~~esl~~fv~AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N~~Ri~~~W~~v~~hL~~v~~--~~~~~~~ 1004 (1380)
-..+|.++|..+|..||..-.-. + .. .-+++ +..|+=+ .-.+......+..++. ++.....
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~--~------l~---~~~w~-----~m~nL~~-S~~g~~~i~~L~~iL~~~~~~~~~~ 269 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV--S------LC---KPSWR-----TMRNLLK-SHLGHSAIRTLCDILRSPDPQNKRD 269 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc--c------cc---hhHHH-----HHHHHHc-CccHHHHHHHHHHHHcccCcccccc
Confidence 46899999999999999886211 0 00 01122 3333322 1234444455556662 2221111
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---CCCcchh-H-HHHHhHHHHhccCHHHHHHHHHHHHHHHHHHH-hhCCCCcccccCh
Q 000634 1005 PFAEKAMVGLFKVCLRLLSSY---QSDKLPE-E-LIFKSINLMWKLDKEILDTCSQLITQSVSKII-IEYPANLQSAVGW 1078 (1380)
Q Consensus 1005 ~l~~rAv~~LlrL~~~lL~~~---~~e~l~~-~-ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll-~~~~~~l~s~~gW 1078 (1380)
.-+-|+.+..++ .++-.. .-+.+.- . .++.+|..-++.+.. .|.--|+..+..++ ...+..+. ...|
T Consensus 270 ~~~lRGAv~~l~---~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~---~v~~eIl~~i~~ll~~~~~~~l~-~~~W 342 (464)
T PF11864_consen 270 INVLRGAVFFLR---MLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP---RVDYEILLLINRLLDGKYGRELS-EEDW 342 (464)
T ss_pred HHHHhhHHHHHH---HHHhccccCCcceecccHHHHHHHHHHHHhCCCC---eehHHHHHHHHHHHhHhhhhhhc-ccCc
Confidence 111222222222 222211 1112221 1 233666665554432 23346777888888 66666543 3589
Q ss_pred HHHHHHHhccC
Q 000634 1079 KSVLHLLSVTG 1089 (1380)
Q Consensus 1079 ~~vf~iL~~~~ 1089 (1380)
..++.++..+.
T Consensus 343 ~~~~~i~~~~~ 353 (464)
T PF11864_consen 343 DIILDIIEEIF 353 (464)
T ss_pred hHHHHHHHHHH
Confidence 99999998653
No 29
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=42.43 E-value=1.2e+02 Score=28.87 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=42.3
Q ss_pred cccchhhHHHHHHHHHhhchhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 000634 959 EEETVGFCWDLIIAIAIANNNRFQAFWPSFHDYLLLVTQFPLFSPIPFAEKAMVG 1013 (1380)
Q Consensus 959 ~e~~~~F~Leklv~V~l~N~~Ri~~~W~~v~~hL~~v~~~~~~~~~~l~~rAv~~ 1013 (1380)
+.+.+.+.|+.+..+...+-+.|...|+.|.+-|..++....- .++..|...
T Consensus 31 ~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e---~lv~~af~~ 82 (86)
T PF09324_consen 31 SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDE---SLVRLAFQI 82 (86)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCc---cHHHHHHHH
Confidence 4567889999999999999999999999999999998886543 456555543
No 30
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=6.3e+02 Score=34.63 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHHHHHHHHHHhhhc-------
Q 000634 1190 AVNLFIKLGEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVDDLHEKMIEYSRR------- 1262 (1380)
Q Consensus 1190 ~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~~L~~~~~~~S~~------- 1262 (1380)
..+.|..+.+.+ ++|+ .||+.|+.-+-+.... |--.-+..+ . .++-..++.+.++....-++
T Consensus 675 ~e~~~~ll~~~l----~~~n-~i~~~av~av~~l~s~-y~~~d~~~~-~----~li~~~ls~~~~~~~~~~r~g~~lal~ 743 (1133)
T KOG1943|consen 675 IENWQMLLAQNL----TLPN-QIRDAAVSAVSDLVST-YVKADEGEE-A----PLITRYLSRLTKCSEERIRRGLILALG 743 (1133)
T ss_pred HHHHHHHHHHhh----cchH-HHHHHHHHHHHHHHHH-HHhcCchhh-h----HHHHHHHHHhcCchHHHHHHHHHHHHc
Confidence 445677777777 6787 9999999988877763 332211111 1 12223334443331110000
Q ss_pred ----c---ch----------hhhhhc-hHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhcCCCCCCc
Q 000634 1263 ----E---NA----------EREMRS-MEGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVLRRMDTCMKADLGPYGE 1324 (1380)
Q Consensus 1263 ----~---~~----------~~d~~~-~~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~~m~~~~~~~~s 1324 (1380)
+ -+ +..|.. |.|.|.+.+..+.++--..-. ......+.+.-..||.-|+.|.- |.||-=+
T Consensus 744 ~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~-~~~~~~~~k~~e~LL~~lddYtt-d~rGDVG 821 (1133)
T KOG1943|consen 744 VLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTS-LLFSESIEKFRETLLNALDDYTT-DSRGDVG 821 (1133)
T ss_pred cCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH-hhccccHHHHHHHHHHHHhhccc-ccCccHH
Confidence 0 00 012233 999999988877766555442 22345688999999999999875 4555223
Q ss_pred chhhhHHHHHHHHHHHhhhhcccCCCCc----chHHHHHHHHHHHHh
Q 000634 1325 TKLQETIPDLLRNMITMMKEREILAPKE----DEDLWEITYIQIQWI 1367 (1380)
Q Consensus 1325 ~~L~Eav~esLKnmLLvm~~~g~l~~~~----~~~lW~~Tw~ri~~~ 1367 (1380)
--+.||+..++..++.-..+...|.+.. ...+-..+-++|+++
T Consensus 822 swVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrl 868 (1133)
T KOG1943|consen 822 SWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRL 868 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHH
Confidence 4578999999998887766544443210 112334466666665
No 31
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=36.69 E-value=2.8e+02 Score=29.20 Aligned_cols=103 Identities=11% Similarity=0.137 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHHHHHHhhhhc-ccCCChhhHHHHHHHHHHHhHHHHHHHHHHhhhccchhhhhhchHHHHHHHHHHHHH
Q 000634 1207 ARREEIRNHAVLALQKCFTLAE-DLDFSSINCINCFNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEGTLKNAMELLAN 1285 (1380)
Q Consensus 1207 d~R~eVR~~Ai~tLqr~ll~~~-g~~l~~~~W~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~ET~v~al~llsk 1285 (1380)
..+--=|+.|+..|-+++..+. ...++...|..+|+ .||-.+..=.+ .+ ............-.++|..-+..+-+
T Consensus 15 S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~--~y-~~~~~~~~s~~~~~~~RL~~~a~~lR 90 (155)
T PF11640_consen 15 SDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKE--AY-SRKKSSSASTATTAESRLSSCASALR 90 (155)
T ss_pred ccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHH--HH-hcCCCcccchHHHHHHHHHHHHHHHH
Confidence 3455669999999999998431 16789999999997 55566654221 12 11100111112256777777777777
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHhc
Q 000634 1286 VFLQFIKQIAESPGFRTFWLGVLRRMDTCMKA 1317 (1380)
Q Consensus 1286 vFl~~l~~L~~~~~F~~lW~~iLd~~~~~m~~ 1317 (1380)
.|...-..-...- .-..|++++-..|..
T Consensus 91 ~~ve~~~~~~k~k----t~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 91 LFVEKSNSRLKRK----TVKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHhhcccc----hHHHHHHHHHHHhhC
Confidence 7765544322222 234555666556654
No 32
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=33.93 E-value=4.3e+02 Score=28.03 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcccCCccCC---CCccccchhhHHHHHHHHHhhchhhhh----------hhHHHHHHHHHHHhcCCCCCc
Q 000634 937 NLGRSLIFAAAGKGQKFST---PVEEEETVGFCWDLIIAIAIANNNRFQ----------AFWPSFHDYLLLVTQFPLFSP 1003 (1380)
Q Consensus 937 ~fv~AL~~ls~~~~~~~~~---s~~~e~~~~F~Leklv~V~l~N~~Ri~----------~~W~~v~~hL~~v~~~~~~~~ 1003 (1380)
.+.+.||.++......... ....+..+.|+|+.+-.+-..+.+.+. .+...+..++...+.++..
T Consensus 10 ~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~-- 87 (168)
T PF12783_consen 10 LVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF-- 87 (168)
T ss_pred HHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh--
Confidence 4778999998322111100 013456789999999888776654433 3556677777777766442
Q ss_pred HHHHHHHHHHHHHHH
Q 000634 1004 IPFAEKAMVGLFKVC 1018 (1380)
Q Consensus 1004 ~~l~~rAv~~LlrL~ 1018 (1380)
.+..+++--+..+.
T Consensus 88 -~i~~~slri~~~l~ 101 (168)
T PF12783_consen 88 -PIFSRSLRIFLTLL 101 (168)
T ss_pred -HHHHHHHHHHHHHH
Confidence 45555544444443
No 33
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.94 E-value=1.7e+03 Score=31.76 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHHhh
Q 000634 1272 MEGTLKNAMELLANVFLQFIKQIAESPGFRTFWLGVLRRMDTCMKADLGPYGETKLQETIPDLLRNMITMM 1342 (1380)
Q Consensus 1272 ~~ET~v~al~llskvFl~~l~~L~~~~~F~~lW~~iLd~~~~~m~~~~~~~~s~~L~Eav~esLKnmLLvm 1342 (1380)
=+++|..|.++++.+|..+-.++. +++..+|...|..+. + ++.++.=+.-++-|+.|+-+
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~---D------~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFN---D------ISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhc---c------CChhhhhhHHHHhHHHHhcC
Confidence 468999999999999999999998 789999999887663 2 34556566667777777643
No 34
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=27.97 E-value=1.3e+03 Score=28.96 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=46.4
Q ss_pred HHHHHHHHHHccCCCCCCCcChHHHHHHHHHHHhh-ccccCCCCCchhHHHHHHHHHHHHHHcccCccccCchHHHHHHH
Q 000634 112 VALSAILKILKLEIFDEKTPGVKDAINIVVTGITS-CQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTDEAVCTIVN 190 (1380)
Q Consensus 112 ~AL~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~-crfe~td~~~De~VllkILq~L~~ll~~~~g~~l~~~~v~~~l~ 190 (1380)
--|.=+...+.++.-..+. ..+..+++.++. |+ ..+.+..+.-.|+++-++++. |. ++++.+..++.
T Consensus 153 ~ll~~l~nviKfn~~~l~e----~~i~~lv~~i~~iC~-----~Ts~~~di~~~L~vldaii~y--~~-iP~~sl~~~i~ 220 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDE----DEISSLVDQICTICK-----STSSEDDIEACLSVLDAIITY--GD-IPSESLSPCIE 220 (464)
T ss_pred HHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHc--Cc-CChHHHHHHHH
Confidence 3344445555555422222 345555554443 53 223344567889999999884 44 99999999999
Q ss_pred HHHHHhhc
Q 000634 191 TCFHVVQQ 198 (1380)
Q Consensus 191 ~C~~l~~q 198 (1380)
+-++++..
T Consensus 221 vLCsi~~~ 228 (464)
T PF11864_consen 221 VLCSIVNS 228 (464)
T ss_pred HHhhHhcc
Confidence 88888654
No 35
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.98 E-value=2.4e+02 Score=30.75 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=62.6
Q ss_pred cchHHHHHHhcCCCCCcchHHHHHHHHHHHHccCCCCCCCcChHHHHHHHHHHHhhccccCCCCCchhHHHHHHHHHHHH
Q 000634 91 IYLSPFLDVVQSDDIPAAATGVALSAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIA 170 (1380)
Q Consensus 91 ~~l~PFL~vi~s~~~~~~it~~AL~sl~k~l~~~~i~~~~~~~~~a~~~i~~av~~crfe~td~~~De~VllkILq~L~~ 170 (1380)
.|+...+..|-++ ++++--.|+.-|.-.+.+|+++|. .++..++... ||+.. .+-=+-.+.+..
T Consensus 8 ryl~~Il~~~~~~--~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~-------ts~~~--~ir~~A~~~l~~ 71 (187)
T PF12830_consen 8 RYLKNILELCLSS--DDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALE-------TSPNP--SIRSRAYQLLKE 71 (187)
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhh-------CCCCh--HHHHHHHHHHHH
Confidence 4888999999988 679999999999999999999984 3455444322 44433 477777788877
Q ss_pred HHcccCccccCchHHHHHHHHHHHHh
Q 000634 171 IMRHRASILLTDEAVCTIVNTCFHVV 196 (1380)
Q Consensus 171 ll~~~~g~~l~~~~v~~~l~~C~~l~ 196 (1380)
+-..+. .++.. ...+-++.+|...
T Consensus 72 l~eK~~-s~v~~-~~~~gi~~af~~~ 95 (187)
T PF12830_consen 72 LHEKHE-SLVES-RYSEGIRLAFDYQ 95 (187)
T ss_pred HHHHhH-HHHHH-HHHHHHHHHHHHH
Confidence 766653 33433 4566777777763
No 36
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=24.38 E-value=2.3e+02 Score=27.27 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHh
Q 000634 1273 EGTLKNAMELLANVFLQFIKQIAE-SPGFRTFWLGVLRRMDTCMK 1316 (1380)
Q Consensus 1273 ~ET~v~al~llskvFl~~l~~L~~-~~~F~~lW~~iLd~~~~~m~ 1316 (1380)
.|+...|+.|+||+|-.||..... .+...===..+.+++|.+.+
T Consensus 22 Yesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~D 66 (104)
T KOG1766|consen 22 YESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLAD 66 (104)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhh
Confidence 589999999999999999987631 22222122344566665543
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=24.37 E-value=1.7e+02 Score=34.29 Aligned_cols=77 Identities=16% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhH--HHHHHHHHHHhHHHHHHHHHHhhhccchhhhhhchHHH
Q 000634 1198 GEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINC--INCFNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEGT 1275 (1380)
Q Consensus 1198 l~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W--~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~ET 1275 (1380)
+.-+.+.......+||..|++.++.++..+....++...+ ......-+..++.+.+.. + -.|.
T Consensus 66 l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------------~---~~~~ 130 (298)
T PF12719_consen 66 LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS------------E---NPEL 130 (298)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc------------C---CHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000634 1276 LKNAMELLANVFLQ 1289 (1380)
Q Consensus 1276 ~v~al~llskvFl~ 1289 (1380)
+..|+.|+||+|+.
T Consensus 131 ~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 131 QAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHhc
No 38
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=24.26 E-value=38 Score=33.02 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHhcccCc
Q 000634 1353 DEDLWEITYIQIQWIAPSLK 1372 (1380)
Q Consensus 1353 ~~~lW~~Tw~ri~~~lP~l~ 1372 (1380)
..+-|-.-|.||++|-||+-
T Consensus 60 Pt~SWVakWqri~~f~~G~Y 79 (111)
T KOG3490|consen 60 PTESWVAKWQRIGRFTPGMY 79 (111)
T ss_pred ccHHHHHHHHhhccccCceE
Confidence 46899999999999999975
No 39
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.97 E-value=1.3e+03 Score=27.51 Aligned_cols=239 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccccCCch--HHHHHHHHHHHHHHHHhhccCc----------hHHHHH----------------HHHHHH
Q 000634 293 VLINSAIELSGDAIGKHP--KLLRMVQDDLFHHLIHYGARSS----------PLVLSM----------------ICSTVL 344 (1380)
Q Consensus 293 ~Li~~~le~~g~~~~~~p--~l~~li~~~Lc~~Ll~~~~s~~----------~~~~~~----------------~lri~~ 344 (1380)
++|..++..+|....++| +.+..+|..+.+.+-.+..... ++++.. .+.++.
T Consensus 18 ~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~ 97 (319)
T PF08767_consen 18 QIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMA 97 (319)
T ss_dssp HHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHH
T ss_pred HHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHhcC--chHHHHHhHhcCCCCCCccHHHHHH
Q 000634 345 NIYHFLRRFIRLQLEAFFGFVVLRVAA-----SGNSHQLQEVALEGIINFCRQ--PTFLIEVYVNYDCDPLCRNVIEEIG 417 (1380)
Q Consensus 345 ~L~~~lr~~Lk~qlE~fl~~l~~~i~~-----~~~~~~~r~l~LE~l~~l~~~--p~~~~~ly~nYDCd~~~~nlfe~lv 417 (1380)
.+...++..+..++..++..++...++ -..-|++|.-..+.|+.+++. +.++. --++.|+.++
T Consensus 98 ~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~----------lp~~~f~~~i 167 (319)
T PF08767_consen 98 TIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ----------LPPEQFKLVI 167 (319)
T ss_dssp HHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH----------S-HHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc----------CCHHHHHHHH
Q ss_pred HHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcccccCCCccCCCCCCCcchHHHHHHHHHHh
Q 000634 418 KLLCKHSFPVSGPLTSSQIQAFEGLVILIHNIAESIDKEGDTSPSGPYPVEITEYKPFWEEKPNDDSDTWVEYVRLRKAQ 497 (1380)
Q Consensus 418 ~~L~k~a~~~~~~~~~~~~l~Le~l~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~ 497 (1380)
..+.... ..+...+...||+++..++..+.. ........+-++=..
T Consensus 168 dsi~wg~---kh~~~~I~~~~L~~l~~ll~~~~~-------------------------------~~~~~~~~F~~~y~~ 213 (319)
T PF08767_consen 168 DSIVWGF---KHTNREISETGLNILLELLNNVSK-------------------------------TNPEFANQFYQQYYL 213 (319)
T ss_dssp HHHHHHH---TSSSHHHHHHHHHHHHHHHHHHHH--------------------------------SHHHHHHHHHHHHH
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHh-------------------------------cCHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhhcccChHhHHHHH----------HHCCCCCCCCCH----------HHHHHHHHhh-cCCChHHHhhhc---
Q 000634 498 KRKSLIAGNHFNRDEKKGLEYL----------KLCQLVSDPPDP----------KALAFFFRFT-QGLDKNMIGDYL--- 553 (1380)
Q Consensus 498 K~~l~~~~~~Fn~~pk~gi~~l----------~~~~~~~~~~~p----------~~ia~fl~~~-~~l~k~~igeyL--- 553 (1380)
.-.-..-.-....+=|.|++.- ++.|.+..|.-+ +-++..|.+. |.++.+++..|+
T Consensus 214 ~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~L 293 (319)
T PF08767_consen 214 DILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGL 293 (319)
T ss_dssp HHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q ss_pred ----cCChhhhHHHHHHHHhccCCCC
Q 000634 554 ----GDADEFHIQVLKEFTETFEFAG 575 (1380)
Q Consensus 554 ----~~~~~~~~~vL~~f~~~fdf~~ 575 (1380)
+++.+|...+-+=-++.=.|.|
T Consensus 294 f~~~~d~~~Fk~~lrDFlI~~kef~g 319 (319)
T PF08767_consen 294 FELNNDPEKFKTHLRDFLIQLKEFSG 319 (319)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHTSTTT
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhccC
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=1.4e+03 Score=29.86 Aligned_cols=209 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhhchhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHhHHHHhccCHHH
Q 000634 970 IIAIAIANNNRFQAFWPSFHDYLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSDKLPEELIFKSINLMWKLDKEI 1049 (1380)
Q Consensus 970 lv~V~l~N~~Ri~~~W~~v~~hL~~v~~~~~~~~~~l~~rAv~~LlrL~~~lL~~~~~e~l~~~ll~~sL~~L~~l~~~~ 1049 (1380)
++.||.-.|+-+.---+.+..||......... .+|.-+.=.|-|-+..... ++ +++.+-.-|+.|++---+.
T Consensus 417 lGAIAEGcM~g~~p~LpeLip~l~~~L~DKkp---lVRsITCWTLsRys~wv~~---~~--~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 417 LGAIAEGCMQGFVPHLPELIPFLLSLLDDKKP---LVRSITCWTLSRYSKWVVQ---DS--RDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHhccCcc---ceeeeeeeeHhhhhhhHhc---CC--hHhhhHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccC----------------------------------------
Q 000634 1050 LDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTG---------------------------------------- 1089 (1380)
Q Consensus 1050 ~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~---------------------------------------- 1089 (1380)
-..|+|..-....-+-+..++.+.. .-..|+.-|-.++
T Consensus 489 NK~VQEAAcsAfAtleE~A~~eLVp--~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi 566 (885)
T KOG2023|consen 489 NKKVQEAACSAFATLEEEAGEELVP--YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLI 566 (885)
T ss_pred cHHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHH
Q ss_pred -------CCCchhHHHHHHHHHHh----hCCCccChhhHHHHHHHHHHhHhc----------cCCCccchhhHhHhhhhh
Q 000634 1090 -------RHPDTHEQAVETLIMLI----SDGTHISKATYAYCIDCAFSFVAL----------KNSPLEKNLKILDLLSDS 1148 (1380)
Q Consensus 1090 -------~~~~~~~~afe~L~~Iv----sd~~~lt~~nf~~cV~~l~~F~~~----------~~~~~n~sl~ai~ll~~~ 1148 (1380)
.+.+..-.=+||+..|. ..|.+-.+.-|.-|++.+.+-..+ ....-+.-..++|++++.
T Consensus 567 ~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGL 646 (885)
T KOG2023|consen 567 EKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGL 646 (885)
T ss_pred HHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHH
Q ss_pred HHHHHHHhhhcccccCCccccccCCCCCchhhhhccCchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 000634 1149 VNLLIQWYKNAWSESGNNYSIASSTSTSSLEDYKGLNSLNFAVNLFIKLGEALRKTSLARREEIRNHAVLAL 1220 (1380)
Q Consensus 1149 ~~~~~~~~~~~~~~~g~~~s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La~lc~d~R~eVR~~Ai~tL 1220 (1380)
..-+..-... +-..++ |+.-|-.=+.|+-+|||++|..-|
T Consensus 647 aegLg~~ie~-------------------Lva~sn-------------l~~lll~C~~D~~peVRQS~FALL 686 (885)
T KOG2023|consen 647 AEGLGSHIEP-------------------LVAQSN-------------LLDLLLQCLQDEVPEVRQSAFALL 686 (885)
T ss_pred HHHhhhchHH-------------------Hhhhcc-------------HHHHHHHHhccCChHHHHHHHHHH
No 41
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=23.34 E-value=2.7e+02 Score=26.46 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHh-hcCCChHHHhhhccCChhhhHHHHHHH
Q 000634 503 IAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRF-TQGLDKNMIGDYLGDADEFHIQVLKEF 567 (1380)
Q Consensus 503 ~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~-~~~l~k~~igeyL~~~~~~~~~vL~~f 567 (1380)
.-++.|+-+++ .+...+--..-..|..||.||-. ..+++-..||.++|..+ +..|.++.
T Consensus 7 ~Va~~~~v~~~----~i~~~~R~~~~~~aR~ia~yl~~~~~~~s~~~Ig~~fg~r~--hStV~~a~ 66 (90)
T cd06571 7 AVAEYFGISVE----DLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRD--HSTVLHAV 66 (90)
T ss_pred HHHHHhCCCHH----HHhcCCCCcCcchHHHHHHHHHHHHhCCCHHHHHHHhCCCC--HhHHHHHH
Confidence 34567776553 23333332233468999999654 46999999999999665 56666654
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.32 E-value=4.6e+02 Score=24.98 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=63.6
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHHHHHHHHHHhhhccchhhhhhchHHHHH
Q 000634 1198 GEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVDDLHEKMIEYSRRENAEREMRSMEGTLK 1277 (1380)
Q Consensus 1198 l~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~~L~~~~~~~S~~~~~~~d~~~~~ET~v 1277 (1380)
+..|.+...++..++|..|+.+|...-.. ++..+..++..-.+|.+-+++... + .+.+.
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~------~~~~~~~~~~~~~i~~l~~~l~~~-----------~----~~v~~ 67 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG------NNDNIQAVVEAGGLPALVQLLKSE-----------D----EEVVK 67 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC------CHHHHHHHHHCCChHHHHHHHhCC-----------C----HHHHH
Confidence 44455555677799999999998886652 366777777767778887776431 1 24556
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHH-HHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHH
Q 000634 1278 NAMELLANVFLQFIKQIAESPGFRTFWL-GVLRRMDTCMKADLGPYGETKLQETIPDLLRNM 1338 (1380)
Q Consensus 1278 ~al~llskvFl~~l~~L~~~~~F~~lW~-~iLd~~~~~m~~~~~~~~s~~L~Eav~esLKnm 1338 (1380)
.|+..++.+-...-. .-...+. +++..+-++++.+ +....+.+-..|.|+
T Consensus 68 ~a~~~L~~l~~~~~~------~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l 118 (120)
T cd00020 68 AALWALRNLAAGPED------NKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHHHccCcHH------HHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHh
Confidence 666666655322211 1112232 2556666666542 344555555555554
No 43
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.26 E-value=3.1e+02 Score=34.05 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhhhhcccCCChhhHHHHHHHHHHHhHHHHHH
Q 000634 1198 GEALRKTSLARREEIRNHAVLALQKCFTLAEDLDFSSINCINCFNLVIFAMVDDLHE 1254 (1380)
Q Consensus 1198 l~~La~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~l~~~~W~~~f~~VLFPLL~~L~~ 1254 (1380)
.+-|....-+.|.+=|++|++-|...+- +| +-..|+.+|+++|.-+++-|.+
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~--e~---sfsvWeq~f~~iL~~l~EvL~d 340 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLC--EG---SFSVWEQHFAEILLLLLEVLSD 340 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHH--cc---chhHHHHHHHHHHHHHHHHHcc
Confidence 3344455556799999999999999888 34 3468999999999888887765
No 44
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.71 E-value=1.2e+03 Score=26.87 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccC--CCCchhHHHHHHHHHHhhCCCccChhhHHHHHHHHHHh
Q 000634 1050 LDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTG--RHPDTHEQAVETLIMLISDGTHISKATYAYCIDCAFSF 1127 (1380)
Q Consensus 1050 ~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~--~~~~~~~~afe~L~~Ivsd~~~lt~~nf~~cV~~l~~F 1127 (1380)
....|..+.+-+..+++++...+++ .|=.-|.+++..+. ++|...-.+|+.+..+++.+. + +...+...+++..|
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-~-~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-I-SEFAEDLFDVFSCY 171 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-c-chhHHHHHHHhhhe
Confidence 3467778888888888887776643 45566677777665 589899999999999998875 2 44445555555444
Q ss_pred Hhcc-----CCCccchhhHhHhhhhhHHHHHHHhhhcccccCCccccccCCCCCchhhhhccCchhHHHHHHHHHHHHHH
Q 000634 1128 VALK-----NSPLEKNLKILDLLSDSVNLLIQWYKNAWSESGNNYSIASSTSTSSLEDYKGLNSLNFAVNLFIKLGEALR 1202 (1380)
Q Consensus 1128 ~~~~-----~~~~n~sl~ai~ll~~~~~~~~~~~~~~~~~~g~~~s~~s~~~~s~~~~~~~~~~~~~~~~lW~~Ll~~La 1202 (1380)
-=-. +++ ...+.-++-.....|+. +....+.+-+|++..
T Consensus 172 FPI~F~pp~~dp--~~IT~edLk~~L~~cl~--------------------------------s~~~fa~~~~p~Lle-- 215 (262)
T PF14500_consen 172 FPITFRPPPNDP--YGITREDLKRALRNCLS--------------------------------STPLFAPFAFPLLLE-- 215 (262)
T ss_pred eeeeeeCCCCCC--CCCCHHHHHHHHHHHhc--------------------------------CcHhhHHHHHHHHHH--
Confidence 2221 121 12233333222223220 111133333444433
Q ss_pred HhhccchHHHHHHHHHHHHHHhhhhcccC
Q 000634 1203 KTSLARREEIRNHAVLALQKCFTLAEDLD 1231 (1380)
Q Consensus 1203 ~lc~d~R~eVR~~Ai~tLqr~ll~~~g~~ 1231 (1380)
+++.+ -+.|+..+++||..|+. .||..
T Consensus 216 KL~s~-~~~~K~D~L~tL~~c~~-~y~~~ 242 (262)
T PF14500_consen 216 KLDST-SPSVKLDSLQTLKACIE-NYGAD 242 (262)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHH-HCCHH
Confidence 34433 34499999999999999 48753
No 45
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.24 E-value=7.4e+02 Score=25.92 Aligned_cols=70 Identities=7% Similarity=-0.012 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 000634 320 LFHHLIHYGARSSPLVLSMICSTVLNIYHFLRRFIRLQ--LEAFFGFVVLRVAASGNSHQLQEVALEGIINFC 390 (1380)
Q Consensus 320 Lc~~Ll~~~~s~~~~~~~~~lri~~~L~~~lr~~Lk~q--lE~fl~~l~~~i~~~~~~~~~r~l~LE~l~~l~ 390 (1380)
..++|.+-+.+.++.+.-.++.+.-.+...+..++..| -..|+..+. +++....+..-|.-+|+.+..|.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~-kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK-KLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH-HHhcccCCHHHHHHHHHHHHHHH
Confidence 34445555556666666667777777776666544444 457888765 45554477888999999998764
No 46
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=22.07 E-value=1.3e+02 Score=27.42 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=24.4
Q ss_pred HHHHHHHHH-hhcCCChHHHhhhccCChhhhHHHHHH
Q 000634 531 PKALAFFFR-FTQGLDKNMIGDYLGDADEFHIQVLKE 566 (1380)
Q Consensus 531 p~~ia~fl~-~~~~l~k~~igeyL~~~~~~~~~vL~~ 566 (1380)
|..+|.||- ..-+++-..||.++|.++ +.-|+++
T Consensus 32 aR~va~yL~r~~~~~sl~~Ig~~fg~rd--HstV~~a 66 (70)
T PF08299_consen 32 ARQVAMYLARELTGLSLSEIGRYFGGRD--HSTVIHA 66 (70)
T ss_dssp HHHHHHHHHHHHS---HHHHHHHCTSST--HHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHhCCCC--HHHHHHH
Confidence 678888864 457999999999999777 6677765
No 47
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=21.86 E-value=9.8e+02 Score=25.44 Aligned_cols=128 Identities=15% Similarity=0.147 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHHhcccCCccCCCCccccchhhHHHHHHHHHhhc-hhhhhhhHHHHHHHHHHHhcCCCCCcHHHHHH
Q 000634 931 PLEALQNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLIIAIAIAN-NNRFQAFWPSFHDYLLLVTQFPLFSPIPFAEK 1009 (1380)
Q Consensus 931 ~~esl~~fv~AL~~ls~~~~~~~~~s~~~e~~~~F~Leklv~V~l~N-~~Ri~~~W~~v~~hL~~v~~~~~~~~~~l~~r 1009 (1380)
....+..++.-+..+...+ ....+-..+.++..++.+| .+++..--..-...+..+++.+. +....+-
T Consensus 19 ~~~~l~~l~~ri~~LL~s~---------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~--~~~~~~~ 87 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSK---------SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD--PPSVLEA 87 (165)
T ss_pred CHHHHHHHHHHHHHHhCCC---------ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHH
Confidence 4555666666666555211 1334667777888888887 56664333333455666666543 3467888
Q ss_pred HHHHHHHHHHHHhhccCCCcchhHHHH----HhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 000634 1010 AMVGLFKVCLRLLSSYQSDKLPEELIF----KSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQS 1074 (1380)
Q Consensus 1010 Av~~LlrL~~~lL~~~~~e~l~~~ll~----~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s 1074 (1380)
|+..|.++..+.-. .+++..|+.- +-+..++++..+ ..+.+.++++|..++..++..++.
T Consensus 88 ai~~L~~l~~~~~~---~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 88 AIITLTRLFDLIRG---KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred HHHHHHHHHHHhcC---CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence 88888888776544 4555444320 112223332221 356677888999999988888876
No 48
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.17 E-value=6.2e+02 Score=27.17 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHhHHHHhccCHHHHHHHHHHHHHHHHHHHhhCCCCcccccChHHH
Q 000634 1002 SPIPFAEKAMVGLFKVCLRLLSSYQSDKLPEELIFKSINLMWKLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSV 1081 (1380)
Q Consensus 1002 ~~~~l~~rAv~~LlrL~~~lL~~~~~e~l~~~ll~~sL~~L~~l~~~~~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~v 1081 (1380)
+| .++.-++.++-.||.|.-. +-++.+ ..+-..+.-+. ..||++.+.+|.+++...--.++. ..+
T Consensus 1 ~~-~vR~n~i~~l~DL~~r~~~------~ve~~~-~~l~~~L~D~~---~~VR~~al~~Ls~Li~~d~ik~k~----~l~ 65 (178)
T PF12717_consen 1 DP-SVRNNAIIALGDLCIRYPN------LVEPYL-PNLYKCLRDED---PLVRKTALLVLSHLILEDMIKVKG----QLF 65 (178)
T ss_pred CH-HHHHHHHHHHHHHHHhCcH------HHHhHH-HHHHHHHCCCC---HHHHHHHHHHHHHHHHcCceeehh----hhh
Q ss_pred HHHHhccCC-CCchhHHHHHHHHHHhhC-CCccChhhHHHHHHHHHHh
Q 000634 1082 LHLLSVTGR-HPDTHEQAVETLIMLISD-GTHISKATYAYCIDCAFSF 1127 (1380)
Q Consensus 1082 f~iL~~~~~-~~~~~~~afe~L~~Ivsd-~~~lt~~nf~~cV~~l~~F 1127 (1380)
+.++..+.. +|+....|-.++.-+... ....-..+|..|+..+..+
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=20.80 E-value=2.3e+02 Score=27.55 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcccccChHHHHHHHhccCCCCc-hhHHHHHHHHHHhhC
Q 000634 1050 LDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGRHPD-THEQAVETLIMLISD 1108 (1380)
Q Consensus 1050 ~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~vf~iL~~~~~~~~-~~~~afe~L~~Ivsd 1108 (1380)
...||--..++|..+.+..+..+-. ....||..|.....+|+ .++.+-+.|-.++.|
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 4578888889999999887766655 66777777777666654 578888887766543
No 50
>PRK06030 hypothetical protein; Provisional
Probab=20.69 E-value=2.9e+02 Score=28.27 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHhhcccChHhHHHHHHHCCCC-CCCCCHHHHHHHH-HhhcCCChHHHhhhccCChhhhHHHHHHH
Q 000634 502 LIAGNHFNRDEKKGLEYLKLCQLV-SDPPDPKALAFFF-RFTQGLDKNMIGDYLGDADEFHIQVLKEF 567 (1380)
Q Consensus 502 ~~~~~~Fn~~pk~gi~~l~~~~~~-~~~~~p~~ia~fl-~~~~~l~k~~igeyL~~~~~~~~~vL~~f 567 (1380)
..-++.||-+|+.- ....-- +.-..|..||.|| +..-+++-..||+++| ++ +.-|++++
T Consensus 30 ~~Va~~f~I~~~di----~sk~R~rk~i~~aRqIAMYL~r~~~~~sl~~IG~~FG-RD--HSTV~hai 90 (124)
T PRK06030 30 DLLALAFGVSGAEI----ASPLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RD--RTTVGHAC 90 (124)
T ss_pred HHHHHHhCCCHHHH----hCCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHHC-CC--hhHHHHHH
Confidence 35578899877542 122111 1123589999996 5568999999999999 65 67777765
No 51
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=20.44 E-value=2e+02 Score=25.10 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=34.8
Q ss_pred HHHhhcccChHhHHHHHHHCCCCCCCCCHHHHHHHHHh-hcCCChHHHhhhccCCh
Q 000634 503 IAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRF-TQGLDKNMIGDYLGDAD 557 (1380)
Q Consensus 503 ~~~~~Fn~~pk~gi~~l~~~~~~~~~~~p~~ia~fl~~-~~~l~k~~igeyL~~~~ 557 (1380)
.-.+.|+-+++. |...+--+.-..|..||.||-. ..+++-..||.+||+++
T Consensus 8 ~Va~~~~i~~~~----i~s~~R~~~~~~aR~iamyla~~~~~~sl~~Ig~~fg~rd 59 (60)
T smart00760 8 AVAEYFGVKPED----LKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRD 59 (60)
T ss_pred HHHHHhCCCHHH----HhcCCCCcchhHHHHHHHHHHHHHHCCCHHHHHHHhCCCC
Confidence 446678877643 3343333333457899999654 57999999999999654
No 52
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.18 E-value=1.9e+03 Score=31.89 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHHHHHHh----hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc-Cch
Q 000634 320 LFHHLIHY----GARSSPLVLSMICSTVLNIYHFLRRFIRLQLEAFFGFVVLRVAASGNSHQLQEVALEGIINFCR-QPT 394 (1380)
Q Consensus 320 Lc~~Ll~~----~~s~~~~~~~~~lri~~~L~~~lr~~Lk~qlE~fl~~l~~~i~~~~~~~~~r~l~LE~l~~l~~-~p~ 394 (1380)
.|+.++.. +.|.++.+.+...-+...+|..|..+ .|.|++ ..++.++.+ +. ...-..+|++|..++. .|+
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~--~qqeVv-~~Lvthi~s-g~-~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY--CQQEVV-GALVTHIGS-GN-SQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH--HHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch--hHHHHH-HHHHHHHcC-Cc-HHHHHHHHHHHHHHHhccHH
Confidence 34444443 45677777777777777788777543 345544 444556643 22 2344578999988886 555
Q ss_pred HHHHH--h--HhcCCC--CCCccHHHHHHHHHHhhcCCCC
Q 000634 395 FLIEV--Y--VNYDCD--PLCRNVIEEIGKLLCKHSFPVS 428 (1380)
Q Consensus 395 ~~~~l--y--~nYDCd--~~~~nlfe~lv~~L~k~a~~~~ 428 (1380)
.+... | ---||- .+-.+ ..++...|+..+++.+
T Consensus 507 ~l~~fa~~l~giLD~l~~Ls~~q-iR~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 507 ELQPFATFLKGILDYLDNLSLQQ-IRKLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHTHHHHHGGGGGGGG--HHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHhcCCc
Confidence 55432 1 112332 22223 4567788888887653
Done!