Query 000634
Match_columns 1380
No_of_seqs 346 out of 1099
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 15:58:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000634.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_408-412//hhsearch_pdb/000634hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_E ARNO; protein transport 1.0 1 1 464.2 19.5 195 492-689 7-201 (203)
2 3ltl_A Brefeldin A-inhibited g 1.0 1 1 461.8 19.4 196 491-689 12-209 (211)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 461.7 18.4 195 491-689 17-227 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 435.6 16.8 190 498-688 8-200 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 433.4 20.2 192 495-689 12-203 (347)
6 1qgr_A Protein (importin beta 1.0 1 1 21.5 24.7 134 965-1106 583-721 (876)
7 3tjz_B Coatomer subunit gamma; 1.0 1 1 21.3 8.0 21 1203-1223 331-351 (355)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 21.2 24.8 227 106-393 61-287 (852)
9 1wa5_B Importin alpha subunit; 1.0 1 1 19.0 18.2 19 1207-1225 394-412 (530)
10 2qk2_A LP04448P; mini spindles 1.0 1 1 18.9 15.0 17 1207-1223 109-125 (242)
No 1
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=464.18 Aligned_cols=195 Identities=41% Similarity=0.733 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99998655899999640529376799999789999999979998997740599957886210587256389999998206
Q 000634 492 RLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETF 571 (1380)
Q Consensus 492 ~~~k~~K~~l~~g~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~ige~L~~~~~~~~~vL~~f~~~f 571 (1380)
++.|++|+.+..|+.+||.+||+||+||+++|++++ +|++||+||+.++||+|++||+|||++++||..||++|++.|
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~--~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~f 84 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQN--TPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLH 84 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 348888899999999981299999999998799999--999999999877685899999998514437999999999964
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 88998868999998612557995368999999999999641699976787748999999998412478920148889888
Q 000634 572 EFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEE 651 (1380)
Q Consensus 572 df~~~~~~~aLR~~l~~frlpgE~q~Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~ 651 (1380)
||+|+++|+|||.||.+||||||+|+||||||+||+|||+ |||+.|.++|++|+|+||+||||||+|||++|+|||+++
T Consensus 85 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~-~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~ 163 (203)
T 1r8s_E 85 EFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCL-CNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLER 163 (203)
T ss_dssp CCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHH-HSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 9789968999999997261787168999999999999998-497656781167999989988651004742223467999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99841267899999998999999995507644458888
Q 000634 652 FIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSG 689 (1380)
Q Consensus 652 F~~n~~g~n~g~d~p~~~L~~iy~~I~~~~i~~~~~~~ 689 (1380)
|++|+||+|+|+|||+++|++||++|+.+||+++++++
T Consensus 164 Fi~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 164 FVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99986266578999999999999999848788965768
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=461.84 Aligned_cols=196 Identities=40% Similarity=0.738 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999865589999964052937679999978999999997999899774059995788621058725638999999820
Q 000634 491 VRLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTET 570 (1380)
Q Consensus 491 l~~~k~~K~~l~~g~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~ige~L~~~~~~~~~vL~~f~~~ 570 (1380)
++.+|++|+.+..|+.+||.+||+||+||+++|++++ +|++||+||+++++|||++||+|||++++||.+||++|++.
T Consensus 12 ~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~--~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 12 FEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGT--TPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp ---CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999998899999999983299999999998699899--99999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 6889988689999986125579953689999999999996416999--76787748999999998412478920148889
Q 000634 571 FEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSE--IFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMT 648 (1380)
Q Consensus 571 fdf~~~~~~~aLR~~l~~frlpgE~q~Idri~e~Fa~~y~~~~~~~--~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt 648 (1380)
|||+|+++|+|||.||.+||||||+|+||||||+||+|||+ |||+ +|.|+|++|+|+||+||||||+|||++|+|||
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~-~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt 168 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLE-CNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMT 168 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHH-TCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 59889979999999997371798426999999999999998-58887774788899999999999856414864568989
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88899841267899999998999999995507644458888
Q 000634 649 EEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSG 689 (1380)
Q Consensus 649 ~~~F~~n~~g~n~g~d~p~~~L~~iy~~I~~~~i~~~~~~~ 689 (1380)
+++|++|+||+|+|+|||+++|.+||++|+.+||+|+++..
T Consensus 169 ~~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~ 209 (211)
T 3ltl_A 169 KEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE 209 (211)
T ss_dssp HHHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999986543678999999999999999848762789988
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=461.70 Aligned_cols=195 Identities=36% Similarity=0.575 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999998655899999640529376799999789999999979998997740-5999578862105872563899999982
Q 000634 491 VRLRKAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFT-QGLDKNMIGDYLGDADEFHIQVLKEFTE 569 (1380)
Q Consensus 491 l~~~k~~K~~l~~g~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~-~~l~k~~ige~L~~~~~~~~~vL~~f~~ 569 (1380)
++++|++|+.+..|+.+||++||+||+||+++|+++++ +|++||+||+.+ ++|||++||+|||+++ |.+||++|++
T Consensus 17 ~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~-~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 17 RGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASD-SDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCS-SHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999954999999999988983899-98999999997276569999999980821--7999999985
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC---------------CCCCCCCHHHHHHHHHHHH
Q ss_conf 0688998868999998612557995368999999999999641699---------------9767877489999999984
Q 000634 570 TFEFAGMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTS---------------EIFVAKDSVYIFCYSLIML 634 (1380)
Q Consensus 570 ~fdf~~~~~~~aLR~~l~~frlpgE~q~Idri~e~Fa~~y~~~~~~---------------~~~~~~d~~~~l~ysiimL 634 (1380)
.|||+|+++|+|||.||..||||||+|+||||||+||+|||+ ||| .+|.++|++|+|+||+|||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~-~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImL 172 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCE-NQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIML 172 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHH-TSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 426799979999999998085885199999999999999998-1877753210100112234557702899999999998
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1247892014888988899841267899999998999999995507644458888
Q 000634 635 NTDQHNPQVKKKMTEEEFIRNNRGINGGKDLPREYLSELFHSIASNAISVFGQSG 689 (1380)
Q Consensus 635 ntdlhn~~~k~~mt~~~F~~n~~g~n~g~d~p~~~L~~iy~~I~~~~i~~~~~~~ 689 (1380)
|||+|||++|+|||+++|++|+||+|+|+|||++||.+||++|+.+||+|++|+.
T Consensus 173 NTDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~ 227 (230)
T 1ku1_A 173 NTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH 227 (230)
T ss_dssp HHHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 0130264346777799999986465677888899999999999848346886677
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=435.59 Aligned_cols=190 Identities=34% Similarity=0.577 Sum_probs=177.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5589999964052937679999978999999997999899774-059995788621058725638999999820688998
Q 000634 498 KRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRF-TQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFAGM 576 (1380)
Q Consensus 498 K~~l~~g~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~-~~~l~k~~ige~L~~~~~~~~~vL~~f~~~fdf~~~ 576 (1380)
|+...+|+.+||.+||+||+||++++......+|++||+||+. +++|||++||||||+++++|.+||++|++.|||+|+
T Consensus 8 ~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g~ 87 (356)
T 1xsz_A 8 EKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQ 87 (356)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998159999999999860015899999999999845878899999999857845789999999996697999
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHH
Q ss_conf 86899999861255799536899999999999964169997678774899999999841247892014--8889888998
Q 000634 577 TLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVK--KKMTEEEFIR 654 (1380)
Q Consensus 577 ~~~~aLR~~l~~frlpgE~q~Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~~k--~~mt~~~F~~ 654 (1380)
++|+|||.||..||||||+|+||||||+||+|||+ |||+.|.++|++|+|+||+||||||+|||+++ +|||+++|++
T Consensus 88 ~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~-~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 88 SFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQ-QNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp CHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHH-HCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89999999998284885088999999999999997-39986687438999999999862100386555457898999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4126789999999899999999550764445888
Q 000634 655 NNRGINGGKDLPREYLSELFHSIASNAISVFGQS 688 (1380)
Q Consensus 655 n~~g~n~g~d~p~~~L~~iy~~I~~~~i~~~~~~ 688 (1380)
|+||+|+|+|||+++|++||++|+.+||++...+
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8544468788989999999999970877557755
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=433.42 Aligned_cols=192 Identities=42% Similarity=0.739 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98655899999640529376799999789999999979998997740599957886210587256389999998206889
Q 000634 495 KAQKRKSLIAGNHFNRDEKKGLEYLKLCQLVSDPPDPKALAFFFRFTQGLDKNMIGDYLGDADEFHIQVLKEFTETFEFA 574 (1380)
Q Consensus 495 k~~K~~l~~g~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~ige~L~~~~~~~~~vL~~f~~~fdf~ 574 (1380)
|++|+.+..|+.+||.+|++||+||+++|++++ +|++||+||+.+++|||++||+|||++++||.+||++|++.|||+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~--~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~ 89 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQS--SPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFA 89 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCC--SHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 889999999999982399999999998799999--999999999857275789999986589706899999999953868
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 98868999998612557995368999999999999641699976787748999999998412478920148889888998
Q 000634 575 GMTLDNALRTYLETFRLPGESQKIQRILEAFSDRFFDQQTSEIFVAKDSVYIFCYSLIMLNTDQHNPQVKKKMTEEEFIR 654 (1380)
Q Consensus 575 ~~~~~~aLR~~l~~frlpgE~q~Idri~e~Fa~~y~~~~~~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~ 654 (1380)
|++||+|||.||..||||||+|+||||||+||+|||+ |||++|.++|++|+|+||+||||||+|||++|+|||+++|++
T Consensus 90 ~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~-~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~ 168 (347)
T 2r09_A 90 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCL-CNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFIT 168 (347)
T ss_dssp TCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHH-HSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 9979999999997286897267899999999999998-598656785489999999999705640530124587999998
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 41267899999998999999995507644458888
Q 000634 655 NNRGINGGKDLPREYLSELFHSIASNAISVFGQSG 689 (1380)
Q Consensus 655 n~~g~n~g~d~p~~~L~~iy~~I~~~~i~~~~~~~ 689 (1380)
|+||+|+|+|+|+++|..+|++|+.+|+.++++++
T Consensus 169 n~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 169 MNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 75112677778999999997743137654554455
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=21.54 Aligned_cols=134 Identities=12% Similarity=-0.043 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59999999996400-23542078999999997307999949799999989999999973026998604689887699871
Q 000634 965 FCWDLIIAIAIANN-NRFQAFWPSFHDYLLLVTQFPLFSPIPFAEKAMVGLFKVCLRLLSSYQSDKLPEELIFKSINLMW 1043 (1380)
Q Consensus 965 F~Lekl~~I~l~N~-~Ri~~~W~~i~~hL~~i~~~~~~~~~~l~erAv~~LlrL~~~lL~~~~~e~l~~~ll~~sL~~L~ 1043 (1380)
..+..+..++..-. +.+....+.+.+.+..+..+....+ .+++.++..+..++...-. ... ...++++ ..+...+
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-~v~~~a~~~l~~l~~~~~~-~~~-~~~~~~~-~~l~~~l 658 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG-GVQEDALMAVSTLVEVLGG-EFL-KYMEAFK-PFLGIGL 658 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC-HHHHHHHHHHHHHHHHHGG-GGG-GGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHH-HHH-HHHHHHH-HHHHHHH
T ss_conf 9999999999982854205789999999999998536888-8508999999999999876-099-9999999-9999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC----CCHHHHHHHHHHHHH
Q ss_conf 068889999789999999999962998744563869999997120789----741679999999986
Q 000634 1044 KLDKEILDTCSQLITQSVSKIIIEYPANLQSAVGWKSVLHLLSVTGRH----PDTHEQAVETLIMLI 1106 (1380)
Q Consensus 1044 ~l~~~v~~~v~~~il~~L~~ll~~~~~~l~s~~gW~~if~iL~~~~~~----~~~~~~~fe~L~~I~ 1106 (1380)
.-. ....++...+.++..|+...+..+.. .+..++..+-..... .+....+..++..|+
T Consensus 659 ~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 659 KNY--AEYQVCLAAVGLVGDLCRALQSNIIP--FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHC--TTHHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 586--50879999999999999988785464--5999999999974871233876399999999999
No 7
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=21.31 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=13.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 720134099999999999987
Q 000634 1203 KTSLARREEIRNHAVLALQKC 1223 (1380)
Q Consensus 1203 ~lc~d~R~eVR~~Ai~tLqr~ 1223 (1380)
++..|+-+-|+.-||+||.++
T Consensus 331 ~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 331 NLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ---------------------
T ss_pred HHCCCCCHHHHHHHHHHHHHC
T ss_conf 870698676999999986313
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=21.23 Aligned_cols=227 Identities=10% Similarity=0.090 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 82239999999999870388899995969889999999841345678978446999999999999983557555581579
Q 000634 106 PAAATGVALSAILKILKLEIFDEKTPGVKDAINIVVTGITSCQLEKTDPISEDAVMMRILQVLIAIMRHRASILLTDEAV 185 (1380)
Q Consensus 106 ~~~it~~AL~sl~k~l~~~~i~~~~~~~~~~i~~i~~ai~~crfe~td~~~De~VllkILq~L~~ll~~~~~~~l~~~~v 185 (1380)
+..+-..|...+.+.+...-..- ++ ..-..|-+.+-.+. .+ .+..|.-++-+++..+....... --.+.
T Consensus 61 ~~~vR~~a~~~Lkn~i~~~w~~~-~~---~~~~~ik~~ll~~l---~~--~~~~vr~~~a~~i~~ia~~~~~~-~wp~l- 129 (852)
T 4fdd_A 61 DEPTRSLSGLILKNNVKAHFQNF-PN---GVTDFIKSECLNNI---GD--SSPLIRATVGILITTIASKGELQ-NWPDL- 129 (852)
T ss_dssp CHHHHHHHHHHHHHHTTTSGGGC-CH---HHHHHHHHHHHTTT---TC--SSHHHHHHHHHHHHHHHHHTTTT-TCTTH-
T ss_pred CHHHHHHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHHHH---CC--CCHHHHHHHHHHHHHHHHHCCCC-CCHHH-
T ss_conf 86799999999999898744779-99---99999999999987---49--98999999999999999864813-56899-
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999985124761578999999999999999972388632356899988877766567668885153599999999
Q 000634 186 CTIVNTCFHVVQQSASRGDLLQRSARYTMHELIQIIFSRLPDIEVKSGEGSESDTEDVDMDANLGSGYGIRSAVDIFHFL 265 (1380)
Q Consensus 186 ~~~l~~C~~l~~q~~~~s~~l~~tA~~tl~qlv~~vF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~if~~L 265 (1380)
+....... + +.++.+|..|-.++..++... +....... . .. -.-.++..+
T Consensus 130 ---l~~L~~~l-~--~~~~~~r~~al~~L~~i~~~~----~~~~~~~~---------------~-~~----~~~~il~~l 179 (852)
T 4fdd_A 130 ---LPKLCSLL-D--SEDYNTCEGAFGALQKICEDS----AEILDSDV---------------L-DR----PLNIMIPKF 179 (852)
T ss_dssp ---HHHHHHHH-S--CSSHHHHHHHHHHHHHHHHHH----TTHHHHCS---------------S-SS----CHHHHHHHH
T ss_pred ---HHHHHHHH-C--CCCHHHHHHHHHHHHHHHHHH----HHHHCHHH---------------H-CC----HHHHHHHHH
T ss_conf ---99999987-0--999899999999999999985----78756343---------------1-33----299999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 84014566457889887662046788999999997246332775588999999999999995125864799999999999
Q 000634 266 CSLLNVVELVEGEGSRTSDVDVQLFALVLINSAIELSGDAIGKHPKLLRMVQDDLFHHLIHYGARSSPLVLSMICSTVLN 345 (1380)
Q Consensus 266 c~L~~~~~~~~~~~~~~~~~~~~~~~L~Li~~~le~~~~~~~~~p~l~~li~~~Lc~~Ll~~~~s~~~~~~~~~lri~~~ 345 (1380)
..+++. . +..+|.-+++.+...+...+. .+. -.-+.+.+.+++....++..+-..+++.+..
T Consensus 180 ~~~l~~-----~------~~~vR~~A~~aL~~~~~~~~~------~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 180 LQFFKH-----S------SPKIRSHAVACVNQFIISRTQ------ALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp TTTTTC-----S------SHHHHHHHHHHHHTTTTTTCH------HHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHCC-----C------CHHHHHHHHHHHHHHHHCCCH------HHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 998567-----9------789999999999999864638------799-8899999999987179977899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999999986089999888999999999982591
Q 000634 346 IYHFLRRFIRLQLEAFFGFVVLRVAASGNSHQLQEVALEGIINFCRQP 393 (1380)
Q Consensus 346 L~~~lr~~Lk~qlE~fl~~l~~~i~~~~~~~~~r~l~LE~l~~l~~~p 393 (1380)
+.......++..++.++..++..+. +....-|..++|.+..++..+
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCCH
T ss_conf 9985779899889999999998706--996899999999999986036
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=1.00 E-value=1 Score=19.00 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 3409999999999998731
Q 000634 1207 ARREEIRNHAVLALQKCFT 1225 (1380)
Q Consensus 1207 d~R~eVR~~Ai~tLqr~l~ 1225 (1380)
++..+||..|+..|.....
T Consensus 394 ~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 6988899999999999981
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=18.85 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 34099999999999987
Q 000634 1207 ARREEIRNHAVLALQKC 1223 (1380)
Q Consensus 1207 d~R~eVR~~Ai~tLqr~ 1223 (1380)
|+...||..|..+|..+
T Consensus 109 d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAI 125 (242)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 89889999999999999
Done!