BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000635
(1380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 33/251 (13%)
Query: 156 AFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVAR-RAKEDNIFDA----VA 210
A + +LS LK +T ++GM G GK+ LA E R + + F V+
Sbjct: 135 AIQQKLSKLKGEPGWVT--------IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 186
Query: 211 FSEVSQTPDIKNIQG-----EIAEKLGXXXXXXXXXXXXXXXXXXXKKEKKILVVLDNLW 265
+ ++ + +Q + E +K + L++LD++W
Sbjct: 187 VGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246
Query: 266 KSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLS-MGSKENFPI-GVLNEQEAWRLFKLT 323
S L+ C++LLTTRD+SV S MG K P+ L +++ + L
Sbjct: 247 DSWVLKAF--------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLF 298
Query: 324 ADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVP-EWENALQELRRPSMESFQ 382
+++ L A + K C G P+ ++ I LR P WE L++L+ + +
Sbjct: 299 V--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIR 354
Query: 383 GVPKEAYSTIE 393
Y ++
Sbjct: 355 KSSSYDYEALD 365
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 33/251 (13%)
Query: 156 AFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAK--EDNIFDAVAFSE 213
A + +LS LK +T ++GM G GK+ LA E R E V +
Sbjct: 141 AIQQKLSKLKGEPGWVT--------IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS 192
Query: 214 VSQTPD------IKNIQGEIA--EKLGXXXXXXXXXXXXXXXXXXXKKEKKILVVLDNLW 265
V + ++N+ + E +K + L++LD++W
Sbjct: 193 VGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 252
Query: 266 KSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLS-MGSKENFPI-GVLNEQEAWRLFKLT 323
S L+ C++LLTTRD+SV S MG K P+ L +++ + L
Sbjct: 253 DSWVLKAF--------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLF 304
Query: 324 ADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVP-EWENALQELRRPSMESFQ 382
+++ L A + K C G P+ ++ I LR P WE L++L+ + +
Sbjct: 305 V--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIR 360
Query: 383 GVPKEAYSTIE 393
Y ++
Sbjct: 361 KSSSYDYEALD 371
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 25/228 (10%)
Query: 179 IGVYGMGGIGKTTLAKEVAR-RAKEDNIFDA----VAFSEVSQTPDIKNIQG-----EIA 228
+ +YGM G GK+ LA E R + + F V+ + ++ + +Q +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 229 EKLGXXXXXXXXXXXXXXXXXXXKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVL 288
E +K + L++LD++W L+ C++L
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQIL 261
Query: 289 LTTRDRSVLLS-MGSKENFPI-GVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGG 346
LTTRD+SV S MG K P+ L ++ + L +++ L + A + K C G
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKG 319
Query: 347 LPIALTTIAKALRKKSVP-EWENALQELRRPSMESFQGVPKEAYSTIE 393
P+ ++ I LR P W L++L+ + + Y ++
Sbjct: 320 SPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 25/228 (10%)
Query: 179 IGVYGMGGIGKTTLAKEVAR-RAKEDNIFDA----VAFSEVSQTPDIKNIQG-----EIA 228
+ +YGM G GK+ LA E R + + F V+ + ++ + +Q +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 229 EKLGXXXXXXXXXXXXXXXXXXXKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVL 288
E +K + L++LD++W L+ C++L
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQIL 268
Query: 289 LTTRDRSVLLS-MGSKENFPI-GVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGG 346
LTT D+SV S MG K P+ L ++ + L +++ L + A + K C G
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV--NMKKEDLPAEAHSIIKECKG 326
Query: 347 LPIALTTIAKALRKKSVP-EWENALQELRRPSMESFQGVPKEAYSTIE 393
P+ ++ I LR P W L++L+ + + Y ++
Sbjct: 327 SPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 6/98 (6%)
Query: 538 SKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLL-QNLQTLCLERSTVGDIAI 596
S++S E+ +P+ F + +LRV+ S R+ SL + + L Q+L+ L + + + +I+
Sbjct: 60 SQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117
Query: 597 --IGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLT 632
+ L++L+ LSF D++ + KE G LTKL L L+
Sbjct: 118 CPMASLRHLD-LSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 575 IGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEI-GQLTKLRLLDLTD 633
I L N++ L L + + DI+ + +L NL L + + LP + +LT L+ L L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 634 CFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEV 693
+L+ + V LT L LY+++ ++ +S F L LT L+++
Sbjct: 119 N-QLQSLPDGVFDKLTNLTYLYLYH-----------NQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 694 RNDDILPEGFFTKKLARFKISVGDESFST 722
LPEG F K ++S+ D +
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 547 VPEDFFTGMRKLRVVHFSGMRLASLPYSI-GLLQNLQTLCLERSTVG--DIAIIGKLKNL 603
+P F + KLR+++ + +L +LP I L+NL+TL + + + I + +L NL
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 604 EVLSFLQSDIVMLPKEI-GQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVE 662
L ++ + LP + LTKL L L +L+ + V LT L+ L ++N ++
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 663 WEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFF 704
E F L L TL+++ +PEG F
Sbjct: 171 RVPEG-----------AFDKLTELKTLKLDNNQLKRVPEGAF 201
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ LSF + + L K + LT L LD++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSN--- 183
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQIS 208
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ LSF + + L K + LT L LD++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSN--- 183
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQIS 208
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ L+F + + L K + LT L LD++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSN--- 183
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQIS 208
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 961 LPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQ 1020
LP LE L+LR + + P +F G L RLIL DC+ L + I QL+
Sbjct: 228 LPKLEELDLRGCTALRNY-----PPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLE 280
Query: 1021 RLEISNCMVLQEIIS 1035
+L++ C+ L + S
Sbjct: 281 KLDLRGCVNLSRLPS 295
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 513 VRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLP 572
+R+ SI PE + P+ T A+ + L ++ LR+ ++G+R SLP
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGL---------VNLQSLRL-EWTGIR--SLP 199
Query: 573 YSIGLLQNLQTLCLERSTVGDIA-IIGKLKNLEVLSFLQ-SDIVMLPKEIGQLTKLRLLD 630
SI LQNL++L + S + + I L LE L + + P G L+ L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 631 LTDCFKLKVIATNVLSSLTRLEALYMHNC 659
L DC L + ++ LT+LE L + C
Sbjct: 260 LKDCSNLLTLPLDI-HRLTQLEKLDLRGC 287
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ LSF + V K + LT L LD++
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSN--- 186
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 187 KVSDISVLAKLTNLESLIATNNQIS 211
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ LSF + V K + LT L LD++
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISSN--- 187
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQIS 212
>pdb|3M9G|A Chain A, Crystal Structure Of The Three-Pasta-Domain Of A SerTHR
KINASE FROM Staphylococcus Aureus
Length = 201
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 931 VKTPPASPNRRESEEDELDTSIQLLNEKVVLPN------------LEALELRDINIDKIW 978
+KT P + R E D +D I EKV +PN L++L L+D+ I+K++
Sbjct: 43 IKTTPNTGERVE-RGDSVDVVISKGPEKVKMPNVIGLPKEEALQKLKSLGLKDVTIEKVY 101
Query: 979 HYNELPAMFPGSQSL---TRLILWDCN 1002
+ N+ P + +QS+ T + + D N
Sbjct: 102 N-NQAPKGYIANQSVTANTEIAIHDSN 127
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1141 EDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNS 1190
+D++L Y + SN++YLE +F ++ +H EL DL+ WK +
Sbjct: 444 DDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSG 493
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ L+F + V K + LT L LD++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNF--GNQVTDLKPLANLTTLERLDISSN--- 182
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQIS 207
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 552 FTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQS 611
+G+ L+ ++F G ++ L + L L+ L + + V DI+++ KL NLE L +
Sbjct: 147 LSGLTSLQQLNF-GNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 612 DIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSE 671
I + +G LT L L L + +LK I T L+SLT L L + N + G
Sbjct: 205 QISDI-TPLGILTNLDELSL-NGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLT 260
Query: 672 KRS---------ASLDEFLHLPRLTTLEI-EVRNDDILP 700
K + +++ L LT LE+ E + +DI P
Sbjct: 261 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKL 637
L NL L L +T+ DI+ + L +L+ L+F + V K + LT L LD++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNF--GNQVTDLKPLANLTTLERLDISSN--- 182
Query: 638 KVIATNVLSSLTRLEALYMHNCYVE 662
KV +VL+ LT LE+L N +
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQIS 207
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 552 FTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQS 611
+G+ L+ ++F G ++ L + L L+ L + + V DI+++ KL NLE L +
Sbjct: 147 LSGLTSLQQLNF-GNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 612 DIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSE 671
I + +G LT L L L + +LK I T L+SLT L L + N + G
Sbjct: 205 QISDI-TPLGILTNLDELSL-NGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLT 260
Query: 672 KRS---------ASLDEFLHLPRLTTLEI-EVRNDDILP 700
K + +++ L LT LE+ E + +DI P
Sbjct: 261 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 299
>pdb|3PY9|A Chain A, X-Ray Structural Studies Of The Entire Extra-Cellular
Region Of The SerTHR KINASE PRKC FROM STAPHYLOCOCCUS
AUREUS
Length = 294
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 898 DVGNKNAIEKIEFAQLKSLSLGMLPK-VTNFFREVKTPPASPNRRESEE--DELDTSIQL 954
DV K+ E + +L LG + + ++ + E + +PN E E D +D I
Sbjct: 11 DVIGKSVKEAEQIFNKNNLKLGKISRSYSDKYPENEIIKTTPNTGERVERGDSVDVVISK 70
Query: 955 LNEKVVLPN------------LEALELRDINIDKIWHYNELPAMFPGSQSLT 994
EKV +PN L++L L+D+ I+K+++ N+ P + +QS+T
Sbjct: 71 GPEKVKMPNVIGLPKEEALQKLKSLGLKDVTIEKVYN-NQAPKGYIANQSVT 121
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 575 IGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEI-GQLTKLRLLDLTD 633
I L N++ L L + + DI+ + +L NL L + + LP + +LT L+ L L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 634 CFKLKVIATNVLSSLTRLEALYM-HNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIE 692
+L+ + V LT L L + HN + +S F L LT L++
Sbjct: 119 N-QLQSLPDGVFDKLTNLTYLNLAHN------------QLQSLPKGVFDKLTNLTELDLS 165
Query: 693 VRNDDILPEGFFTK 706
LPEG F K
Sbjct: 166 YNQLQSLPEGVFDK 179
>pdb|3L4F|A Chain A, Crystal Structure Of Betapix Coiled-Coil Domain And
Shank Pdz Complex
pdb|3L4F|B Chain B, Crystal Structure Of Betapix Coiled-Coil Domain And
Shank Pdz Complex
pdb|3L4F|C Chain C, Crystal Structure Of Betapix Coiled-Coil Domain And
Shank Pdz Complex
Length = 61
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 39 LKKEVEKLRGERESMRQRVEEAERNRQEIEKNVEKWLERVN 79
LK EV++LR + + M++ +EE +R R+++EK V K L+ +N
Sbjct: 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 885 KKMEEVFAIGGEADVGNKNAIEKIEFAQLKSLSLGMLPKVTNFFREVKTPPASPNRR 941
KK EE+ A +VGN +A+ ++ AQ+ + LG+ P E++ P++P+ R
Sbjct: 214 KKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP-------EIRLVPSTPDGR 263
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 885 KKMEEVFAIGGEADVGNKNAIEKIEFAQLKSLSLGMLPKVTNFFREVKTPPASPNRR 941
KK EE+ A +VGN +A+ ++ AQ+ + LG+ P E++ P++P+ R
Sbjct: 218 KKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP-------EIRLVPSTPDGR 267
>pdb|1Z6O|A Chain A, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|B Chain B, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|C Chain C, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|D Chain D, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|E Chain E, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|F Chain F, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|G Chain G, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|H Chain H, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|I Chain I, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|J Chain J, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|K Chain K, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|L Chain L, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
Length = 212
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 7 NVVFEVAKWLAAPIGRQVSYLSKSNYTSSFENLKKEVEKLRGERESMRQRVEEAERNRQE 66
NV E+ + + R YL + Y ++++ + KL ++ +EA +
Sbjct: 36 NVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKL------FKKLSDEAWSKTID 89
Query: 67 IEKNVEKWLERVNKIIDETVKITGDEETATKHCIKGLCPNLKTRYQLSKKA 117
I K+V K +++N T+K TA H ++ L L T+ +L+++A
Sbjct: 90 IIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERA 140
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 516 SSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSI 575
+ I ++ + PQL+ L + N+K + + + + + KL + +++ +
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIVPLA 172
Query: 576 GLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLP 617
GL + LQ L L ++ + D+ + LKNL+VL + + P
Sbjct: 173 GLTK-LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 525 LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTL 584
+ PQL+ L + N+K + + + + + KL + +++ + GL + LQ L
Sbjct: 131 VHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNL 183
Query: 585 CLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLP 617
L ++ + D+ + LKNL+VL + + P
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 554 GMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDI 613
G++ ++ + + ++ + GL NLQ L L+ + + +I+ + L NL+ LS + +
Sbjct: 105 GLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV 163
Query: 614 VMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHN 658
L + L+KL L D K+ + L+SL L +++ N
Sbjct: 164 SDL-TPLANLSKLTTLKADDN---KISDISPLASLPNLIEVHLKN 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 525 LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTL 584
+ PQL+ L + N+K + + + + + KL + +++ + GL + LQ L
Sbjct: 129 VHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDIVPLAGLTK-LQNL 181
Query: 585 CLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLP 617
L ++ + D+ + LKNL+VL + + P
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP 214
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 170 ALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAV----AFSEVSQTPDIKNIQG 225
L+D N+ I G G GIGKTTLAK +R E + + A+ P++ I
Sbjct: 47 GLSDVNM-IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILS 105
Query: 226 EIAEKLG 232
I + G
Sbjct: 106 LIVRQTG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,713,401
Number of Sequences: 62578
Number of extensions: 1499503
Number of successful extensions: 4122
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 4038
Number of HSP's gapped (non-prelim): 132
length of query: 1380
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1269
effective length of database: 8,027,179
effective search space: 10186490151
effective search space used: 10186490151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)