Query 000635
Match_columns 1380
No_of_seqs 795 out of 6510
Neff 10.1
Searched_HMMs 46136
Date Mon Apr 1 20:59:33 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.1E-78 8.9E-83 745.0 45.4 591 33-632 20-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.7E-61 1.9E-65 630.3 58.1 695 152-1033 181-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4E-38 8.7E-43 357.0 16.5 273 160-436 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.3E-33 5E-38 373.5 28.4 533 506-1321 69-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.9E-33 6.3E-38 372.5 28.7 489 504-1185 91-587 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 3E-26 6.5E-31 240.6 -11.9 256 961-1259 274-539 (565)
7 KOG4194 Membrane glycoprotein 99.9 1.3E-23 2.8E-28 230.8 7.5 366 557-1178 79-448 (873)
8 KOG0618 Serine/threonine phosp 99.9 2.1E-24 4.5E-29 250.7 -1.3 143 511-659 3-147 (1081)
9 KOG4194 Membrane glycoprotein 99.9 6.7E-23 1.5E-27 225.2 10.1 296 506-890 52-356 (873)
10 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.8E-26 258.1 18.5 269 961-1298 633-909 (1153)
11 KOG0444 Cytoskeletal regulator 99.9 2E-23 4.3E-28 230.1 -3.1 175 505-697 6-186 (1255)
12 KOG0618 Serine/threonine phosp 99.9 1.4E-23 2.9E-28 244.0 -5.6 130 1087-1260 358-488 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 3.1E-23 6.7E-28 228.6 -5.7 334 492-890 40-378 (1255)
14 KOG0472 Leucine-rich repeat pr 99.8 2.7E-24 5.8E-29 226.1 -16.1 109 960-1101 433-541 (565)
15 KOG0617 Ras suppressor protein 99.6 1.4E-17 2.9E-22 155.1 -3.9 168 517-703 22-192 (264)
16 KOG0617 Ras suppressor protein 99.6 8.7E-17 1.9E-21 149.8 -3.5 156 500-662 27-186 (264)
17 KOG4237 Extracellular matrix p 99.5 3.2E-15 6.9E-20 158.4 0.1 153 526-695 42-199 (498)
18 KOG4237 Extracellular matrix p 99.4 7E-15 1.5E-19 155.9 -1.9 275 511-802 51-332 (498)
19 PRK04841 transcriptional regul 99.4 7.2E-12 1.6E-16 166.9 25.5 298 149-483 8-333 (903)
20 PRK15387 E3 ubiquitin-protein 99.4 4.8E-12 1E-16 154.9 15.4 155 510-701 205-359 (788)
21 PRK15387 E3 ubiquitin-protein 99.4 9.7E-12 2.1E-16 152.3 17.8 186 491-718 208-394 (788)
22 PRK15370 E3 ubiquitin-protein 99.3 3.5E-12 7.6E-17 157.5 11.4 134 509-660 181-315 (754)
23 COG2909 MalT ATP-dependent tra 99.3 8.4E-11 1.8E-15 138.6 20.3 299 149-484 13-340 (894)
24 PRK15370 E3 ubiquitin-protein 99.3 8E-12 1.7E-16 154.4 12.5 195 490-718 184-379 (754)
25 PRK00411 cdc6 cell division co 99.3 1.4E-09 3E-14 129.3 27.5 288 153-462 28-358 (394)
26 KOG4341 F-box protein containi 99.2 4.4E-13 9.5E-18 143.9 -7.4 247 962-1237 138-387 (483)
27 KOG4341 F-box protein containi 99.1 2.2E-12 4.7E-17 138.7 -4.6 176 846-1069 162-337 (483)
28 TIGR02928 orc1/cdc6 family rep 99.1 2.7E-08 5.8E-13 117.0 29.0 289 155-462 15-350 (365)
29 TIGR03015 pepcterm_ATPase puta 99.1 9.5E-09 2.1E-13 115.2 23.5 180 174-358 41-242 (269)
30 KOG4658 Apoptotic ATPase [Sign 99.1 4.8E-11 1E-15 149.9 4.6 177 506-697 545-730 (889)
31 PF01637 Arch_ATPase: Archaeal 99.1 4.9E-10 1.1E-14 123.2 10.5 195 157-353 1-233 (234)
32 PF05729 NACHT: NACHT domain 99.0 2.5E-09 5.4E-14 110.3 12.7 143 177-324 1-163 (166)
33 KOG0532 Leucine-rich repeat (L 99.0 3.6E-11 7.8E-16 134.1 -2.7 176 507-703 76-253 (722)
34 PF14580 LRR_9: Leucine-rich r 99.0 7E-10 1.5E-14 111.0 5.6 130 553-692 16-148 (175)
35 KOG1259 Nischarin, modulator o 98.9 1.1E-10 2.4E-15 119.4 -0.4 181 506-702 237-417 (490)
36 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.7E-16 133.3 -3.5 172 526-718 73-246 (722)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 109.7 4.1 125 563-700 4-129 (175)
38 TIGR00635 ruvB Holliday juncti 98.8 4.2E-07 9.1E-12 103.8 23.8 189 154-357 3-204 (305)
39 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.9E-14 126.1 3.1 108 552-661 77-205 (319)
40 PTZ00112 origin recognition co 98.8 5E-07 1.1E-11 108.0 23.2 201 154-358 754-986 (1164)
41 cd00116 LRR_RI Leucine-rich re 98.8 9.4E-10 2E-14 127.4 0.3 82 553-634 20-118 (319)
42 COG2256 MGS1 ATPase related to 98.8 3.2E-07 6.8E-12 100.0 19.4 223 151-402 20-266 (436)
43 PRK00080 ruvB Holliday junctio 98.8 7.3E-07 1.6E-11 102.2 23.7 274 151-462 21-310 (328)
44 COG3903 Predicted ATPase [Gene 98.7 2.7E-08 5.9E-13 109.1 7.5 292 176-484 14-316 (414)
45 PRK13342 recombination factor 98.7 6.3E-07 1.4E-11 105.9 19.3 180 151-357 8-199 (413)
46 KOG1259 Nischarin, modulator o 98.6 3.3E-09 7.1E-14 108.8 -1.4 131 504-641 282-415 (490)
47 PRK06893 DNA replication initi 98.6 2.9E-07 6.2E-12 99.1 13.2 156 174-357 37-206 (229)
48 KOG3207 Beta-tubulin folding c 98.6 8.4E-09 1.8E-13 112.2 0.9 201 505-713 120-333 (505)
49 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.1E-07 1.3E-11 97.5 13.5 175 155-357 15-204 (226)
50 COG4886 Leucine-rich repeat (L 98.6 5.6E-08 1.2E-12 115.7 5.7 148 507-661 117-267 (394)
51 COG4886 Leucine-rich repeat (L 98.6 5.5E-08 1.2E-12 115.8 5.4 170 526-714 114-285 (394)
52 KOG3207 Beta-tubulin folding c 98.5 5.3E-08 1.2E-12 106.1 2.4 163 960-1149 170-337 (505)
53 COG3899 Predicted ATPase [Gene 98.5 3.5E-06 7.7E-11 107.2 19.0 306 156-482 1-386 (849)
54 PRK04195 replication factor C 98.5 9.7E-06 2.1E-10 97.9 21.2 252 150-441 9-277 (482)
55 PRK12402 replication factor C 98.4 1.7E-06 3.7E-11 100.7 14.0 201 151-353 11-225 (337)
56 COG1474 CDC6 Cdc6-related prot 98.4 1.7E-05 3.8E-10 90.4 21.3 195 156-354 18-238 (366)
57 PRK14961 DNA polymerase III su 98.4 6.3E-06 1.4E-10 95.5 17.3 178 151-351 12-217 (363)
58 PTZ00202 tuzin; Provisional 98.4 1.1E-05 2.3E-10 89.9 17.7 166 149-324 256-434 (550)
59 PRK14960 DNA polymerase III su 98.4 7.2E-06 1.6E-10 97.4 16.6 179 151-352 11-217 (702)
60 PLN03025 replication factor C 98.4 5.5E-06 1.2E-10 94.5 15.5 185 150-351 8-197 (319)
61 PRK07003 DNA polymerase III su 98.4 6.5E-06 1.4E-10 98.7 16.0 180 151-353 12-220 (830)
62 PRK08084 DNA replication initi 98.4 6.7E-06 1.4E-10 88.9 15.0 175 155-357 22-212 (235)
63 PRK14949 DNA polymerase III su 98.4 6E-06 1.3E-10 101.1 15.8 181 151-354 12-220 (944)
64 KOG2028 ATPase related to the 98.3 4.4E-06 9.5E-11 88.9 12.4 177 151-350 134-332 (554)
65 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-08 6.4E-13 102.2 -3.9 171 1131-1320 203-375 (419)
66 PRK00440 rfc replication facto 98.3 1.6E-05 3.4E-10 91.8 17.8 184 150-352 12-201 (319)
67 PF13173 AAA_14: AAA domain 98.3 1.6E-06 3.4E-11 84.0 7.9 120 176-316 2-127 (128)
68 PF13401 AAA_22: AAA domain; P 98.3 2.2E-06 4.8E-11 84.0 9.1 115 176-293 4-125 (131)
69 PRK14962 DNA polymerase III su 98.3 2.8E-05 6E-10 92.0 19.2 189 151-358 10-223 (472)
70 PRK05564 DNA polymerase III su 98.3 1.4E-05 3.1E-10 91.0 16.1 175 155-352 4-188 (313)
71 PRK14963 DNA polymerase III su 98.3 2.2E-05 4.7E-10 93.7 17.5 191 151-351 10-214 (504)
72 PF13855 LRR_8: Leucine rich r 98.3 1E-06 2.2E-11 72.4 4.4 56 557-612 2-60 (61)
73 PRK09112 DNA polymerase III su 98.3 2.4E-05 5.2E-10 89.0 16.9 198 150-354 18-240 (351)
74 cd00009 AAA The AAA+ (ATPases 98.2 6.9E-06 1.5E-10 82.7 11.4 123 158-294 1-130 (151)
75 PLN03150 hypothetical protein; 98.2 1.6E-06 3.4E-11 107.9 7.9 101 558-659 420-525 (623)
76 PRK12323 DNA polymerase III su 98.2 1.3E-05 2.9E-10 94.9 14.9 179 151-352 12-223 (700)
77 PRK15386 type III secretion pr 98.2 3E-06 6.4E-11 95.4 9.0 59 1114-1185 52-110 (426)
78 PRK09087 hypothetical protein; 98.2 2E-05 4.4E-10 84.1 15.0 145 175-357 43-198 (226)
79 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.4E-11 72.1 4.2 60 528-591 1-61 (61)
80 PF13191 AAA_16: AAA ATPase do 98.2 4E-06 8.7E-11 88.0 9.4 51 156-206 1-54 (185)
81 PRK06645 DNA polymerase III su 98.2 3.3E-05 7.1E-10 91.7 17.8 178 151-351 17-226 (507)
82 PRK14956 DNA polymerase III su 98.2 2E-05 4.2E-10 91.3 15.0 191 151-350 14-218 (484)
83 PRK13341 recombination factor 98.2 8.4E-06 1.8E-10 101.0 13.0 174 151-351 24-214 (725)
84 PF05496 RuvB_N: Holliday junc 98.2 4.4E-05 9.6E-10 78.2 15.7 177 150-355 19-222 (233)
85 PRK08727 hypothetical protein; 98.2 2.1E-05 4.5E-10 84.9 14.3 171 153-351 17-201 (233)
86 PLN03150 hypothetical protein; 98.2 2.8E-06 6E-11 105.7 8.6 107 529-639 419-530 (623)
87 PRK07471 DNA polymerase III su 98.2 3.6E-05 7.8E-10 88.1 16.8 196 150-354 14-238 (365)
88 TIGR02397 dnaX_nterm DNA polym 98.2 5.3E-05 1.1E-09 88.8 18.7 181 151-355 10-219 (355)
89 PRK14964 DNA polymerase III su 98.2 5E-05 1.1E-09 89.3 17.7 177 151-350 9-213 (491)
90 PRK05896 DNA polymerase III su 98.2 3.8E-05 8.2E-10 91.6 16.7 190 151-349 12-215 (605)
91 TIGR00678 holB DNA polymerase 98.2 4.5E-05 9.8E-10 79.8 15.4 155 166-350 3-187 (188)
92 PRK14957 DNA polymerase III su 98.1 5.2E-05 1.1E-09 90.6 17.4 181 151-354 12-221 (546)
93 PRK08691 DNA polymerase III su 98.1 3.4E-05 7.4E-10 92.8 15.8 179 151-352 12-218 (709)
94 PRK07940 DNA polymerase III su 98.1 5.5E-05 1.2E-09 87.3 17.0 170 154-352 4-211 (394)
95 KOG1859 Leucine-rich repeat pr 98.1 4.8E-08 1E-12 112.4 -7.7 180 505-700 108-295 (1096)
96 PRK15386 type III secretion pr 98.1 5E-06 1.1E-10 93.7 7.8 39 1169-1213 72-110 (426)
97 PRK14958 DNA polymerase III su 98.1 3.3E-05 7.1E-10 92.6 14.9 178 151-351 12-217 (509)
98 PRK07994 DNA polymerase III su 98.1 3.7E-05 8E-10 93.2 15.2 195 151-354 12-220 (647)
99 TIGR01242 26Sp45 26S proteasom 98.1 5.3E-05 1.2E-09 88.3 15.8 176 151-348 118-328 (364)
100 cd01128 rho_factor Transcripti 98.1 8.2E-06 1.8E-10 87.7 8.1 92 175-267 15-115 (249)
101 PRK14951 DNA polymerase III su 98.1 7.6E-05 1.6E-09 90.4 17.2 196 151-352 12-223 (618)
102 KOG1909 Ran GTPase-activating 98.1 6.9E-07 1.5E-11 95.1 -0.2 43 647-696 155-197 (382)
103 PRK14955 DNA polymerase III su 98.1 4.9E-05 1.1E-09 89.3 15.0 200 151-352 12-226 (397)
104 PRK05642 DNA replication initi 98.1 3.6E-05 7.8E-10 83.1 12.6 154 177-358 46-212 (234)
105 KOG0989 Replication factor C, 98.0 2.7E-05 5.8E-10 81.9 10.6 184 149-348 30-224 (346)
106 TIGR02903 spore_lon_C ATP-depe 98.0 0.00088 1.9E-08 82.8 25.6 202 151-355 150-396 (615)
107 PRK14969 DNA polymerase III su 98.0 5.9E-05 1.3E-09 91.1 14.9 176 151-349 12-215 (527)
108 PRK09376 rho transcription ter 98.0 1.4E-05 3E-10 89.0 8.4 92 175-267 168-268 (416)
109 TIGR02639 ClpA ATP-dependent C 98.0 5.1E-05 1.1E-09 96.4 14.7 159 151-324 178-358 (731)
110 TIGR03345 VI_ClpV1 type VI sec 98.0 6.8E-05 1.5E-09 95.8 15.8 159 151-324 183-363 (852)
111 PRK07133 DNA polymerase III su 98.0 0.00012 2.5E-09 89.4 16.8 178 151-351 14-216 (725)
112 PRK14959 DNA polymerase III su 98.0 0.00011 2.4E-09 88.2 16.3 185 151-358 12-225 (624)
113 PRK09111 DNA polymerase III su 98.0 0.00013 2.9E-09 88.7 17.0 197 151-353 20-232 (598)
114 KOG0531 Protein phosphatase 1, 98.0 7.3E-07 1.6E-11 106.0 -2.3 103 526-634 93-196 (414)
115 KOG0531 Protein phosphatase 1, 97.9 1.7E-06 3.6E-11 103.0 -0.3 108 552-662 91-199 (414)
116 PRK08451 DNA polymerase III su 97.9 0.00024 5.2E-09 84.4 17.5 181 151-354 10-218 (535)
117 PF05621 TniB: Bacterial TniB 97.9 0.00022 4.7E-09 77.0 15.5 189 161-350 43-257 (302)
118 PRK14087 dnaA chromosomal repl 97.9 7.8E-05 1.7E-09 88.3 13.6 167 177-357 142-322 (450)
119 PF00308 Bac_DnaA: Bacterial d 97.9 0.00015 3.2E-09 77.3 14.3 164 176-356 34-210 (219)
120 PRK08903 DnaA regulatory inact 97.9 6.6E-05 1.4E-09 81.4 11.9 173 154-358 17-203 (227)
121 PRK14953 DNA polymerase III su 97.9 0.00033 7.3E-09 83.5 18.6 182 151-355 12-221 (486)
122 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 60.0 3.9 37 557-593 2-38 (44)
123 KOG2227 Pre-initiation complex 97.9 0.00063 1.4E-08 76.1 18.9 195 153-347 148-361 (529)
124 PRK03992 proteasome-activating 97.9 0.00011 2.3E-09 85.9 13.9 175 152-348 128-337 (389)
125 PHA02544 44 clamp loader, smal 97.9 7.2E-05 1.6E-09 85.9 12.4 151 149-322 15-171 (316)
126 PF14516 AAA_35: AAA-like doma 97.9 0.00063 1.4E-08 77.7 19.6 201 153-361 9-246 (331)
127 PRK14971 DNA polymerase III su 97.9 0.00024 5.2E-09 87.2 17.1 177 151-351 13-219 (614)
128 PRK14970 DNA polymerase III su 97.9 0.00034 7.4E-09 82.0 17.9 178 151-351 13-206 (367)
129 PRK14954 DNA polymerase III su 97.9 0.00028 6.2E-09 85.9 17.3 197 151-349 12-223 (620)
130 CHL00095 clpC Clp protease ATP 97.9 0.00017 3.6E-09 93.0 16.1 156 153-323 177-353 (821)
131 PRK06305 DNA polymerase III su 97.9 0.00036 7.9E-09 82.7 17.4 176 151-350 13-218 (451)
132 KOG0991 Replication factor C, 97.9 9.1E-05 2E-09 74.2 10.2 103 149-267 21-125 (333)
133 PRK14952 DNA polymerase III su 97.8 0.00051 1.1E-08 83.1 18.1 181 151-354 9-220 (584)
134 PRK14950 DNA polymerase III su 97.8 0.00026 5.7E-09 87.3 16.0 196 151-354 12-221 (585)
135 KOG1909 Ran GTPase-activating 97.8 3.3E-06 7.1E-11 90.1 -0.6 182 507-696 93-310 (382)
136 PRK07764 DNA polymerase III su 97.8 0.00029 6.2E-09 88.8 16.1 176 151-350 11-217 (824)
137 PRK14948 DNA polymerase III su 97.8 0.0005 1.1E-08 84.4 17.8 197 151-354 12-222 (620)
138 KOG1859 Leucine-rich repeat pr 97.8 7.4E-07 1.6E-11 102.9 -6.3 109 550-662 181-292 (1096)
139 TIGR02881 spore_V_K stage V sp 97.8 0.0002 4.4E-09 79.1 13.0 153 155-324 6-191 (261)
140 COG1222 RPT1 ATP-dependent 26S 97.8 0.00087 1.9E-08 72.5 16.2 187 150-359 146-372 (406)
141 TIGR00767 rho transcription te 97.8 9.3E-05 2E-09 83.2 9.4 92 175-267 167-267 (415)
142 PRK11331 5-methylcytosine-spec 97.7 9.3E-05 2E-09 84.7 9.4 109 154-267 174-284 (459)
143 PRK06647 DNA polymerase III su 97.7 0.00093 2E-08 81.1 18.4 178 151-352 12-218 (563)
144 TIGR03689 pup_AAA proteasome A 97.7 0.00048 1E-08 81.5 15.0 163 150-326 177-380 (512)
145 PRK05563 DNA polymerase III su 97.7 0.00091 2E-08 81.6 17.9 192 151-351 12-217 (559)
146 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.9E-10 96.2 3.3 101 505-611 121-230 (699)
147 PRK14088 dnaA chromosomal repl 97.6 0.00062 1.4E-08 80.7 14.5 180 177-373 131-332 (440)
148 PF12799 LRR_4: Leucine Rich r 97.6 6.3E-05 1.4E-09 56.1 3.9 33 602-634 2-34 (44)
149 KOG3665 ZYG-1-like serine/thre 97.6 1.7E-05 3.7E-10 97.9 1.4 152 527-690 121-281 (699)
150 PTZ00454 26S protease regulato 97.6 0.00067 1.5E-08 78.7 14.4 177 150-348 140-351 (398)
151 PRK10865 protein disaggregatio 97.6 0.00069 1.5E-08 87.1 15.7 159 151-324 174-354 (857)
152 KOG2543 Origin recognition com 97.6 0.00033 7.2E-09 76.2 10.7 164 155-324 6-193 (438)
153 TIGR00362 DnaA chromosomal rep 97.6 0.00045 9.8E-09 82.0 13.1 160 177-353 137-309 (405)
154 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00064 1.4E-08 87.9 15.4 159 151-324 169-349 (852)
155 KOG1947 Leucine rich repeat pr 97.6 3.4E-06 7.5E-11 104.1 -5.2 40 1284-1323 403-442 (482)
156 PTZ00361 26 proteosome regulat 97.6 0.00057 1.2E-08 79.8 13.3 176 150-348 178-389 (438)
157 KOG2120 SCF ubiquitin ligase, 97.6 2.7E-06 5.9E-11 88.1 -5.0 84 579-662 185-273 (419)
158 PF05673 DUF815: Protein of un 97.6 0.0032 7E-08 65.8 17.1 89 151-265 23-116 (249)
159 PRK11034 clpA ATP-dependent Cl 97.6 0.00035 7.7E-09 87.4 11.9 158 153-324 184-362 (758)
160 TIGR02880 cbbX_cfxQ probable R 97.6 0.00075 1.6E-08 75.1 13.2 130 178-324 60-208 (284)
161 PRK07399 DNA polymerase III su 97.6 0.002 4.3E-08 72.5 16.6 192 155-353 4-220 (314)
162 PRK00149 dnaA chromosomal repl 97.5 0.00067 1.5E-08 81.5 13.3 179 177-373 149-349 (450)
163 PF10443 RNA12: RNA12 protein; 97.5 0.0059 1.3E-07 69.1 19.4 191 160-361 1-285 (431)
164 PRK14965 DNA polymerase III su 97.5 0.0015 3.2E-08 80.3 16.1 180 151-354 12-221 (576)
165 CHL00181 cbbX CbbX; Provisiona 97.5 0.0024 5.1E-08 71.0 16.3 130 178-324 61-209 (287)
166 PRK05707 DNA polymerase III su 97.5 0.0015 3.3E-08 73.8 14.5 154 176-354 22-203 (328)
167 KOG2004 Mitochondrial ATP-depe 97.5 0.0026 5.6E-08 74.9 16.0 155 155-324 411-596 (906)
168 PRK14086 dnaA chromosomal repl 97.5 0.0014 3E-08 78.6 14.1 160 177-353 315-487 (617)
169 COG0593 DnaA ATPase involved i 97.4 0.00087 1.9E-08 76.2 11.2 182 176-374 113-314 (408)
170 TIGR01241 FtsH_fam ATP-depende 97.4 0.0015 3.3E-08 79.4 14.3 177 150-348 50-260 (495)
171 KOG4579 Leucine-rich repeat (L 97.4 1.7E-05 3.7E-10 72.7 -1.9 90 553-643 50-141 (177)
172 PRK06620 hypothetical protein; 97.4 0.00089 1.9E-08 70.9 10.5 136 177-353 45-188 (214)
173 COG3267 ExeA Type II secretory 97.4 0.0065 1.4E-07 63.2 16.0 190 162-357 38-248 (269)
174 CHL00176 ftsH cell division pr 97.4 0.0028 6.2E-08 77.9 16.1 173 153-347 181-387 (638)
175 KOG2982 Uncharacterized conser 97.4 9.9E-05 2.1E-09 76.9 2.6 82 553-634 68-156 (418)
176 TIGR00602 rad24 checkpoint pro 97.3 0.00072 1.6E-08 82.3 9.6 53 149-201 78-135 (637)
177 smart00382 AAA ATPases associa 97.3 0.00069 1.5E-08 67.5 8.1 91 177-270 3-93 (148)
178 PF00004 AAA: ATPase family as 97.3 0.00044 9.5E-09 67.7 6.3 69 179-267 1-70 (132)
179 COG0466 Lon ATP-dependent Lon 97.3 0.0059 1.3E-07 72.5 16.2 154 157-324 325-508 (782)
180 COG5238 RNA1 Ran GTPase-activa 97.3 7.9E-05 1.7E-09 76.5 0.9 135 555-697 29-198 (388)
181 KOG4579 Leucine-rich repeat (L 97.3 2.7E-05 5.8E-10 71.5 -2.3 105 511-619 32-141 (177)
182 COG2255 RuvB Holliday junction 97.3 0.035 7.6E-07 58.6 19.8 174 151-356 22-225 (332)
183 PRK08769 DNA polymerase III su 97.2 0.0059 1.3E-07 68.3 15.2 171 162-353 11-207 (319)
184 PRK12422 chromosomal replicati 97.2 0.0029 6.3E-08 74.8 13.5 153 177-348 142-307 (445)
185 KOG1644 U2-associated snRNP A' 97.2 0.0004 8.7E-09 68.7 5.1 82 580-662 43-126 (233)
186 PRK10536 hypothetical protein; 97.2 0.0016 3.5E-08 69.0 9.9 57 153-211 53-109 (262)
187 PRK06090 DNA polymerase III su 97.1 0.029 6.2E-07 62.8 19.2 163 163-354 11-201 (319)
188 PRK08058 DNA polymerase III su 97.1 0.0085 1.8E-07 68.4 15.5 145 157-323 7-181 (329)
189 KOG1644 U2-associated snRNP A' 97.1 0.0008 1.7E-08 66.7 5.9 100 529-634 43-150 (233)
190 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0063 1.4E-07 70.4 13.7 184 153-358 188-410 (802)
191 KOG1947 Leucine rich repeat pr 97.1 4.8E-05 1.1E-09 93.9 -3.5 192 1113-1321 187-389 (482)
192 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0037 8E-08 74.3 12.4 176 153-348 226-429 (489)
193 KOG0730 AAA+-type ATPase [Post 97.1 0.01 2.2E-07 69.8 15.2 177 149-348 428-637 (693)
194 PRK06871 DNA polymerase III su 97.1 0.015 3.3E-07 65.2 16.1 173 164-350 11-199 (325)
195 KOG2982 Uncharacterized conser 97.0 0.00035 7.6E-09 73.0 2.8 87 526-614 69-159 (418)
196 TIGR00763 lon ATP-dependent pr 97.0 0.018 3.8E-07 74.1 18.8 46 156-201 321-372 (775)
197 COG1223 Predicted ATPase (AAA+ 97.0 0.011 2.3E-07 61.0 13.0 175 152-348 118-319 (368)
198 PRK12727 flagellar biosynthesi 97.0 0.019 4.2E-07 67.4 16.7 88 176-265 350-438 (559)
199 KOG0736 Peroxisome assembly fa 97.0 0.01 2.2E-07 70.7 14.4 96 152-267 669-776 (953)
200 KOG0741 AAA+-type ATPase [Post 97.0 0.024 5.2E-07 64.5 16.5 148 175-344 537-704 (744)
201 COG1373 Predicted ATPase (AAA+ 97.0 0.011 2.5E-07 69.0 15.1 164 159-353 21-191 (398)
202 PRK12608 transcription termina 97.0 0.0048 1E-07 69.3 11.2 102 165-267 121-232 (380)
203 PF04665 Pox_A32: Poxvirus A32 97.0 0.002 4.3E-08 68.1 7.6 37 177-215 14-50 (241)
204 PRK08181 transposase; Validate 96.9 0.0018 3.8E-08 70.7 7.3 111 164-294 96-209 (269)
205 PF13177 DNA_pol3_delta2: DNA 96.9 0.0061 1.3E-07 61.5 10.6 135 159-312 1-162 (162)
206 PRK10865 protein disaggregatio 96.9 0.035 7.6E-07 71.7 19.8 106 155-267 568-682 (857)
207 PRK08118 topology modulation p 96.9 0.00059 1.3E-08 69.2 2.8 35 177-211 2-37 (167)
208 PRK08116 hypothetical protein; 96.9 0.0023 5.1E-08 70.3 7.6 103 177-294 115-221 (268)
209 PF00448 SRP54: SRP54-type pro 96.8 0.0064 1.4E-07 63.3 10.1 88 176-265 1-93 (196)
210 COG0542 clpA ATP-binding subun 96.8 0.032 6.8E-07 68.7 16.9 105 156-267 492-605 (786)
211 KOG0743 AAA+-type ATPase [Post 96.8 0.11 2.5E-06 58.9 19.9 152 177-361 236-417 (457)
212 COG0542 clpA ATP-binding subun 96.8 0.025 5.5E-07 69.5 15.8 158 152-324 167-346 (786)
213 KOG0731 AAA+-type ATPase conta 96.7 0.014 3E-07 71.1 13.1 176 154-350 310-520 (774)
214 TIGR02640 gas_vesic_GvpN gas v 96.7 0.03 6.4E-07 61.8 15.0 56 162-224 9-64 (262)
215 PHA00729 NTP-binding motif con 96.7 0.0082 1.8E-07 62.8 9.6 36 166-201 7-42 (226)
216 TIGR01243 CDC48 AAA family ATP 96.7 0.014 3E-07 74.9 13.4 175 153-350 176-383 (733)
217 TIGR01243 CDC48 AAA family ATP 96.7 0.012 2.5E-07 75.6 12.7 173 153-348 451-657 (733)
218 KOG0733 Nuclear AAA ATPase (VC 96.6 0.045 9.8E-07 63.6 15.5 129 176-325 545-693 (802)
219 PRK00771 signal recognition pa 96.6 0.057 1.2E-06 63.3 16.5 87 175-265 94-185 (437)
220 KOG1514 Origin recognition com 96.6 0.075 1.6E-06 63.3 17.1 198 156-357 397-624 (767)
221 COG2812 DnaX DNA polymerase II 96.6 0.013 2.8E-07 69.1 11.1 190 151-349 12-215 (515)
222 KOG0739 AAA+-type ATPase [Post 96.6 0.073 1.6E-06 56.2 15.1 171 154-347 132-334 (439)
223 PRK07261 topology modulation p 96.6 0.0067 1.5E-07 61.9 7.8 34 178-211 2-36 (171)
224 CHL00095 clpC Clp protease ATP 96.6 0.061 1.3E-06 69.7 18.3 106 155-267 509-623 (821)
225 PRK07993 DNA polymerase III su 96.5 0.052 1.1E-06 61.8 15.6 163 163-351 10-201 (334)
226 TIGR01425 SRP54_euk signal rec 96.5 0.1 2.2E-06 60.6 17.8 58 175-234 99-157 (429)
227 KOG0734 AAA+-type ATPase conta 96.5 0.0065 1.4E-07 69.0 7.6 88 160-267 312-408 (752)
228 TIGR02639 ClpA ATP-dependent C 96.5 0.018 3.8E-07 73.6 12.8 103 155-267 454-565 (731)
229 PRK06526 transposase; Provisio 96.5 0.0018 4E-08 70.3 3.3 74 176-267 98-171 (254)
230 TIGR03346 chaperone_ClpB ATP-d 96.4 0.024 5.2E-07 73.6 13.7 106 155-267 565-679 (852)
231 COG1484 DnaC DNA replication p 96.4 0.014 3.1E-07 63.5 9.6 83 166-267 97-179 (254)
232 KOG0735 AAA+-type ATPase [Post 96.4 0.022 4.7E-07 67.3 11.3 152 176-347 431-608 (952)
233 PRK06921 hypothetical protein; 96.4 0.0074 1.6E-07 66.3 7.4 71 175-264 116-186 (266)
234 PRK07952 DNA replication prote 96.4 0.023 5.1E-07 61.0 10.9 91 161-267 82-174 (244)
235 KOG2035 Replication factor C, 96.4 0.026 5.7E-07 59.0 10.5 206 154-374 12-259 (351)
236 PRK06964 DNA polymerase III su 96.4 0.15 3.2E-06 57.9 17.6 101 242-352 115-223 (342)
237 PRK14722 flhF flagellar biosyn 96.4 0.015 3.3E-07 66.2 9.7 89 176-266 137-226 (374)
238 PRK08939 primosomal protein Dn 96.3 0.011 2.5E-07 66.1 8.6 117 159-293 135-260 (306)
239 KOG2228 Origin recognition com 96.3 0.054 1.2E-06 58.5 12.9 168 155-324 24-219 (408)
240 PF07693 KAP_NTPase: KAP famil 96.3 0.19 4.2E-06 57.9 19.2 42 162-203 3-47 (325)
241 TIGR03345 VI_ClpV1 type VI sec 96.3 0.009 2E-07 76.8 8.7 106 155-267 566-680 (852)
242 COG1875 NYN ribonuclease and A 96.3 0.0088 1.9E-07 65.1 7.0 135 156-294 225-388 (436)
243 PF01695 IstB_IS21: IstB-like 96.3 0.0046 1E-07 63.3 4.8 74 176-267 47-120 (178)
244 COG0470 HolB ATPase involved i 96.3 0.017 3.7E-07 66.8 10.2 140 157-313 3-170 (325)
245 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.022 4.8E-07 62.2 10.5 56 176-232 19-78 (235)
246 COG1419 FlhF Flagellar GTP-bin 96.3 0.035 7.7E-07 62.6 11.9 102 162-265 185-291 (407)
247 KOG1969 DNA replication checkp 96.3 0.0078 1.7E-07 71.3 7.0 73 176-267 326-399 (877)
248 PLN00020 ribulose bisphosphate 96.3 0.061 1.3E-06 59.9 13.3 151 174-349 146-333 (413)
249 PRK10867 signal recognition pa 96.3 0.2 4.4E-06 58.7 18.5 90 175-265 99-193 (433)
250 KOG2739 Leucine-rich acidic nu 96.3 0.0025 5.4E-08 66.4 2.5 81 553-634 40-126 (260)
251 TIGR02237 recomb_radB DNA repa 96.2 0.021 4.7E-07 60.9 9.8 47 176-225 12-58 (209)
252 KOG0744 AAA+-type ATPase [Post 96.2 0.023 5.1E-07 60.7 9.5 28 176-203 177-204 (423)
253 KOG0728 26S proteasome regulat 96.2 0.054 1.2E-06 55.4 11.6 130 174-324 179-331 (404)
254 KOG0729 26S proteasome regulat 96.2 0.025 5.4E-07 58.3 9.3 97 150-266 172-281 (435)
255 PF13207 AAA_17: AAA domain; P 96.2 0.0041 8.9E-08 59.7 3.7 24 178-201 1-24 (121)
256 PRK12377 putative replication 96.2 0.019 4.2E-07 61.8 9.1 74 176-266 101-174 (248)
257 TIGR03499 FlhF flagellar biosy 96.2 0.023 4.9E-07 63.3 10.0 88 175-264 193-281 (282)
258 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0081 1.8E-07 67.3 6.3 56 156-211 52-118 (361)
259 TIGR02012 tigrfam_recA protein 96.2 0.018 3.8E-07 64.3 8.9 84 176-266 55-144 (321)
260 PRK04296 thymidine kinase; Pro 96.2 0.011 2.4E-07 61.6 6.9 110 177-295 3-117 (190)
261 PRK10787 DNA-binding ATP-depen 96.1 0.027 5.9E-07 71.5 11.5 155 155-324 322-506 (784)
262 PF08423 Rad51: Rad51; InterP 96.1 0.05 1.1E-06 59.5 12.1 57 177-234 39-99 (256)
263 PRK04132 replication factor C 96.1 0.083 1.8E-06 66.7 14.9 151 184-352 574-729 (846)
264 PF03215 Rad17: Rad17 cell cyc 96.1 0.032 6.9E-07 67.0 11.0 61 150-214 14-79 (519)
265 COG2884 FtsE Predicted ATPase 96.0 0.024 5.2E-07 56.0 7.8 121 176-301 28-204 (223)
266 PRK06696 uridine kinase; Valid 96.0 0.01 2.3E-07 63.8 5.9 44 159-202 2-48 (223)
267 PRK09183 transposase/IS protei 96.0 0.016 3.5E-07 63.5 7.4 26 177-202 103-128 (259)
268 cd00983 recA RecA is a bacter 96.0 0.024 5.1E-07 63.3 8.7 83 176-265 55-143 (325)
269 PRK09354 recA recombinase A; P 96.0 0.028 6.1E-07 63.2 9.3 84 176-266 60-149 (349)
270 PRK11889 flhF flagellar biosyn 96.0 0.054 1.2E-06 61.2 11.2 90 175-266 240-331 (436)
271 PRK13531 regulatory ATPase Rav 95.9 0.021 4.5E-07 66.6 8.2 50 156-207 21-70 (498)
272 PRK06835 DNA replication prote 95.9 0.015 3.2E-07 65.7 6.9 36 177-214 184-219 (329)
273 PRK08699 DNA polymerase III su 95.9 0.17 3.7E-06 57.3 15.3 150 176-350 21-202 (325)
274 PRK12723 flagellar biosynthesi 95.9 0.063 1.4E-06 61.9 12.0 90 175-266 173-265 (388)
275 KOG2123 Uncharacterized conser 95.9 0.00069 1.5E-08 70.1 -3.5 19 553-571 38-56 (388)
276 COG1102 Cmk Cytidylate kinase 95.9 0.025 5.4E-07 54.4 7.0 46 178-236 2-47 (179)
277 KOG0727 26S proteasome regulat 95.9 0.63 1.4E-05 48.0 17.2 131 174-324 187-339 (408)
278 PRK05541 adenylylsulfate kinas 95.8 0.023 5E-07 58.6 7.5 37 175-213 6-42 (176)
279 cd01393 recA_like RecA is a b 95.8 0.049 1.1E-06 59.0 10.4 54 176-230 19-76 (226)
280 TIGR00959 ffh signal recogniti 95.8 0.39 8.6E-06 56.3 18.2 90 175-265 98-192 (428)
281 COG1618 Predicted nucleotide k 95.8 0.011 2.5E-07 56.6 4.6 28 177-204 6-33 (179)
282 TIGR02238 recomb_DMC1 meiotic 95.8 0.043 9.3E-07 61.7 9.9 58 176-234 96-157 (313)
283 COG0541 Ffh Signal recognition 95.8 0.79 1.7E-05 52.2 19.4 59 176-236 100-159 (451)
284 PRK12726 flagellar biosynthesi 95.8 0.058 1.3E-06 60.7 10.7 90 175-266 205-296 (407)
285 COG0488 Uup ATPase components 95.8 0.16 3.6E-06 61.1 15.2 130 177-309 349-510 (530)
286 PRK14974 cell division protein 95.7 0.086 1.9E-06 59.6 12.0 90 175-267 139-234 (336)
287 PRK06762 hypothetical protein; 95.7 0.15 3.2E-06 52.1 12.8 24 177-200 3-26 (166)
288 KOG2123 Uncharacterized conser 95.7 0.00086 1.9E-08 69.5 -3.6 101 554-655 17-123 (388)
289 COG0464 SpoVK ATPases of the A 95.7 0.097 2.1E-06 64.1 13.5 132 175-326 275-425 (494)
290 COG4088 Predicted nucleotide k 95.7 0.0093 2E-07 59.4 3.6 27 177-203 2-28 (261)
291 PRK11034 clpA ATP-dependent Cl 95.6 0.025 5.3E-07 71.3 7.9 102 156-267 459-569 (758)
292 PLN03187 meiotic recombination 95.6 0.059 1.3E-06 61.0 10.0 58 176-234 126-187 (344)
293 PRK09270 nucleoside triphospha 95.5 0.07 1.5E-06 57.7 10.0 30 174-203 31-60 (229)
294 PRK05703 flhF flagellar biosyn 95.5 0.093 2E-06 61.8 11.7 88 176-265 221-309 (424)
295 cd01133 F1-ATPase_beta F1 ATP 95.5 0.068 1.5E-06 58.0 9.5 92 175-267 68-175 (274)
296 cd01120 RecA-like_NTPases RecA 95.5 0.076 1.7E-06 54.0 9.8 40 178-219 1-40 (165)
297 KOG0738 AAA+-type ATPase [Post 95.4 0.17 3.8E-06 55.8 12.3 26 177-202 246-271 (491)
298 PRK09361 radB DNA repair and r 95.4 0.084 1.8E-06 57.1 10.2 45 176-223 23-67 (225)
299 COG1703 ArgK Putative periplas 95.4 0.03 6.5E-07 59.8 6.3 62 166-227 39-102 (323)
300 PF03308 ArgK: ArgK protein; 95.4 0.032 7E-07 58.9 6.4 62 165-226 16-79 (266)
301 PRK08533 flagellar accessory p 95.4 0.092 2E-06 56.5 10.2 53 176-233 24-76 (230)
302 PRK12724 flagellar biosynthesi 95.3 0.064 1.4E-06 61.6 9.0 85 176-264 223-308 (432)
303 cd03115 SRP The signal recogni 95.3 0.075 1.6E-06 54.7 8.8 87 178-266 2-93 (173)
304 cd01121 Sms Sms (bacterial rad 95.2 0.07 1.5E-06 61.5 9.3 85 176-265 82-168 (372)
305 PF05659 RPW8: Arabidopsis bro 95.2 0.13 2.8E-06 50.2 9.6 111 2-128 3-114 (147)
306 PF10236 DAP3: Mitochondrial r 95.2 0.77 1.7E-05 51.8 17.4 47 305-351 258-306 (309)
307 PRK04301 radA DNA repair and r 95.2 0.11 2.3E-06 59.3 10.8 58 176-234 102-163 (317)
308 PRK10733 hflB ATP-dependent me 95.2 0.14 3E-06 64.3 12.4 150 177-348 186-357 (644)
309 TIGR02236 recomb_radA DNA repa 95.2 0.11 2.4E-06 59.1 10.7 58 176-234 95-156 (310)
310 TIGR00554 panK_bact pantothena 95.2 0.095 2.1E-06 57.9 9.6 45 174-218 60-104 (290)
311 PF00560 LRR_1: Leucine Rich R 95.2 0.012 2.5E-07 36.4 1.5 22 557-578 1-22 (22)
312 TIGR03877 thermo_KaiC_1 KaiC d 95.1 0.11 2.4E-06 56.4 10.1 53 176-233 21-73 (237)
313 COG1066 Sms Predicted ATP-depe 95.1 0.071 1.5E-06 59.6 8.3 86 176-267 93-180 (456)
314 TIGR02858 spore_III_AA stage I 95.1 0.051 1.1E-06 59.5 7.3 118 173-298 108-233 (270)
315 PRK05439 pantothenate kinase; 95.1 0.12 2.7E-06 57.4 10.3 81 174-256 84-166 (311)
316 PF01583 APS_kinase: Adenylyls 95.1 0.03 6.6E-07 55.0 4.9 36 176-213 2-37 (156)
317 KOG0735 AAA+-type ATPase [Post 95.1 0.47 1E-05 56.7 15.1 151 177-349 702-871 (952)
318 PF13306 LRR_5: Leucine rich r 95.1 0.069 1.5E-06 51.8 7.5 106 547-658 3-112 (129)
319 COG3640 CooC CO dehydrogenase 95.1 0.044 9.6E-07 56.3 6.1 51 178-236 2-52 (255)
320 KOG0652 26S proteasome regulat 95.1 0.44 9.4E-06 49.4 13.0 52 150-201 166-230 (424)
321 KOG2739 Leucine-rich acidic nu 95.0 0.015 3.2E-07 60.8 2.7 82 553-634 62-153 (260)
322 PF13481 AAA_25: AAA domain; P 95.0 0.11 2.3E-06 54.7 9.5 42 177-218 33-82 (193)
323 CHL00206 ycf2 Ycf2; Provisiona 95.0 0.23 4.9E-06 66.5 13.7 27 176-202 1630-1656(2281)
324 TIGR02239 recomb_RAD51 DNA rep 95.0 0.11 2.3E-06 58.7 9.7 58 176-234 96-157 (316)
325 PLN03186 DNA repair protein RA 95.0 0.097 2.1E-06 59.4 9.3 58 176-234 123-184 (342)
326 cd01394 radB RadB. The archaea 95.0 0.097 2.1E-06 56.3 9.1 42 176-219 19-60 (218)
327 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.049 1.1E-06 56.7 6.6 24 178-201 1-24 (183)
328 cd02025 PanK Pantothenate kina 95.0 0.1 2.2E-06 55.7 8.9 41 178-218 1-41 (220)
329 cd01124 KaiC KaiC is a circadi 95.0 0.093 2E-06 54.8 8.7 45 178-226 1-45 (187)
330 PRK15455 PrkA family serine pr 94.9 0.032 7E-07 65.8 5.3 49 154-202 75-129 (644)
331 PRK07132 DNA polymerase III su 94.9 0.79 1.7E-05 51.1 16.0 166 164-353 5-184 (299)
332 PF00560 LRR_1: Leucine Rich R 94.9 0.0096 2.1E-07 36.8 0.6 21 602-622 1-21 (22)
333 COG5238 RNA1 Ran GTPase-activa 94.9 0.021 4.7E-07 59.3 3.3 164 524-695 88-283 (388)
334 TIGR00064 ftsY signal recognit 94.9 0.13 2.9E-06 56.7 9.8 90 174-266 70-165 (272)
335 PRK06547 hypothetical protein; 94.8 0.038 8.1E-07 56.2 5.0 35 167-201 6-40 (172)
336 PRK07667 uridine kinase; Provi 94.8 0.051 1.1E-06 56.9 6.2 38 165-202 4-43 (193)
337 COG0468 RecA RecA/RadA recombi 94.8 0.18 3.9E-06 55.0 10.4 87 176-265 60-151 (279)
338 PF13238 AAA_18: AAA domain; P 94.8 0.024 5.2E-07 55.0 3.5 22 179-200 1-22 (129)
339 PRK14723 flhF flagellar biosyn 94.8 0.19 4E-06 62.5 11.7 88 176-265 185-273 (767)
340 PTZ00035 Rad51 protein; Provis 94.8 0.17 3.6E-06 57.7 10.7 58 176-234 118-179 (337)
341 PRK14721 flhF flagellar biosyn 94.8 0.16 3.5E-06 59.1 10.5 87 176-264 191-278 (420)
342 cd01131 PilT Pilus retraction 94.8 0.04 8.7E-07 57.9 5.3 111 177-297 2-112 (198)
343 PTZ00301 uridine kinase; Provi 94.7 0.068 1.5E-06 56.2 6.8 26 176-201 3-28 (210)
344 PF07728 AAA_5: AAA domain (dy 94.7 0.059 1.3E-06 53.1 6.1 76 179-267 2-77 (139)
345 PRK13765 ATP-dependent proteas 94.7 0.057 1.2E-06 66.4 6.9 81 150-234 26-106 (637)
346 cd02019 NK Nucleoside/nucleoti 94.7 0.027 5.8E-07 47.3 2.9 23 178-200 1-23 (69)
347 PF00154 RecA: recA bacterial 94.6 0.27 5.9E-06 54.8 11.4 85 176-267 53-143 (322)
348 COG0572 Udk Uridine kinase [Nu 94.6 0.075 1.6E-06 55.0 6.5 28 175-202 7-34 (218)
349 COG2607 Predicted ATPase (AAA+ 94.6 0.31 6.8E-06 50.3 10.6 116 152-294 57-183 (287)
350 PF02562 PhoH: PhoH-like prote 94.6 0.037 8E-07 57.3 4.3 52 160-213 5-56 (205)
351 COG0563 Adk Adenylate kinase a 94.6 0.068 1.5E-06 54.6 6.2 25 178-202 2-26 (178)
352 PRK06067 flagellar accessory p 94.6 0.18 3.9E-06 54.8 9.9 53 176-233 25-77 (234)
353 cd02027 APSK Adenosine 5'-phos 94.6 0.26 5.6E-06 49.0 10.2 25 178-202 1-25 (149)
354 PRK04328 hypothetical protein; 94.6 0.14 3E-06 56.0 9.1 54 176-234 23-76 (249)
355 PF00485 PRK: Phosphoribulokin 94.5 0.033 7.2E-07 58.4 3.9 26 178-203 1-26 (194)
356 PRK06995 flhF flagellar biosyn 94.4 0.17 3.7E-06 59.8 9.8 88 176-265 256-344 (484)
357 PF08433 KTI12: Chromatin asso 94.4 0.1 2.3E-06 57.1 7.5 26 177-202 2-27 (270)
358 KOG0726 26S proteasome regulat 94.4 0.33 7.2E-06 51.2 10.5 97 150-266 180-289 (440)
359 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.056 1.2E-06 57.4 5.2 24 176-199 29-52 (213)
360 PF13245 AAA_19: Part of AAA d 94.4 0.095 2.1E-06 44.8 5.6 27 175-201 9-35 (76)
361 KOG1051 Chaperone HSP104 and r 94.3 0.23 5.1E-06 62.3 11.1 102 156-267 563-672 (898)
362 PRK06851 hypothetical protein; 94.3 0.45 9.8E-06 54.2 12.5 46 173-219 211-256 (367)
363 COG4240 Predicted kinase [Gene 94.3 0.22 4.8E-06 50.7 8.8 82 173-255 47-133 (300)
364 COG1224 TIP49 DNA helicase TIP 94.3 0.13 2.9E-06 56.0 7.7 56 153-208 37-97 (450)
365 PRK10463 hydrogenase nickel in 94.3 0.37 8.1E-06 52.8 11.4 96 165-266 93-195 (290)
366 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.28 6.1E-06 48.6 9.4 116 177-295 3-139 (159)
367 PF13671 AAA_33: AAA domain; P 94.3 0.038 8.3E-07 54.8 3.5 24 178-201 1-24 (143)
368 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.2 4.4E-06 55.0 9.5 39 176-216 36-74 (259)
369 PF06309 Torsin: Torsin; Inte 94.2 0.39 8.6E-06 44.9 9.6 45 157-201 27-78 (127)
370 COG0529 CysC Adenylylsulfate k 94.2 0.08 1.7E-06 51.9 5.2 32 172-203 19-50 (197)
371 TIGR00390 hslU ATP-dependent p 94.2 0.13 2.7E-06 58.9 7.6 47 156-202 13-73 (441)
372 PF07726 AAA_3: ATPase family 94.2 0.04 8.6E-07 51.5 3.0 28 179-208 2-29 (131)
373 COG1428 Deoxynucleoside kinase 94.2 0.081 1.7E-06 53.9 5.4 47 176-227 4-50 (216)
374 KOG3347 Predicted nucleotide k 94.1 0.041 8.9E-07 51.9 3.0 39 177-222 8-46 (176)
375 COG0003 ArsA Predicted ATPase 94.1 0.081 1.8E-06 59.1 6.0 49 176-226 2-50 (322)
376 PRK08233 hypothetical protein; 94.1 0.04 8.7E-07 57.3 3.5 26 176-201 3-28 (182)
377 PTZ00088 adenylate kinase 1; P 94.1 0.062 1.4E-06 57.4 4.8 24 178-201 8-31 (229)
378 TIGR03575 selen_PSTK_euk L-ser 94.0 0.28 6.1E-06 55.4 10.0 36 179-215 2-37 (340)
379 KOG3864 Uncharacterized conser 94.0 0.0075 1.6E-07 60.2 -2.1 43 1221-1263 124-166 (221)
380 TIGR00708 cobA cob(I)alamin ad 94.0 0.38 8.3E-06 48.3 9.8 117 177-294 6-140 (173)
381 cd01135 V_A-ATPase_B V/A-type 94.0 0.25 5.3E-06 53.6 9.1 93 175-267 68-178 (276)
382 KOG0740 AAA+-type ATPase [Post 93.9 0.82 1.8E-05 52.6 13.5 72 176-267 186-257 (428)
383 PRK03839 putative kinase; Prov 93.9 0.046 1E-06 56.7 3.4 24 178-201 2-25 (180)
384 PF14532 Sigma54_activ_2: Sigm 93.9 0.024 5.2E-07 55.7 1.2 43 159-201 2-46 (138)
385 PRK15453 phosphoribulokinase; 93.9 0.25 5.4E-06 53.5 8.7 78 174-253 3-88 (290)
386 TIGR01069 mutS2 MutS2 family p 93.9 0.085 1.8E-06 67.0 6.2 180 174-373 320-520 (771)
387 cd02029 PRK_like Phosphoribulo 93.9 0.23 4.9E-06 53.3 8.4 75 178-254 1-83 (277)
388 PRK00889 adenylylsulfate kinas 93.8 0.19 4.2E-06 51.7 7.9 27 176-202 4-30 (175)
389 PRK11823 DNA repair protein Ra 93.8 0.14 3E-06 61.0 7.6 85 176-265 80-166 (446)
390 TIGR02974 phageshock_pspF psp 93.8 0.51 1.1E-05 53.9 11.8 44 158-201 2-47 (329)
391 PRK05480 uridine/cytidine kina 93.8 0.058 1.2E-06 57.5 4.0 27 174-200 4-30 (209)
392 TIGR00416 sms DNA repair prote 93.8 0.2 4.3E-06 59.7 8.8 85 176-265 94-180 (454)
393 PF00910 RNA_helicase: RNA hel 93.8 0.045 9.7E-07 50.8 2.7 24 179-202 1-24 (107)
394 COG0465 HflB ATP-dependent Zn 93.8 0.27 5.9E-06 59.0 9.8 174 153-350 148-357 (596)
395 PTZ00494 tuzin-like protein; P 93.7 6 0.00013 45.2 19.1 165 150-324 366-544 (664)
396 PRK09519 recA DNA recombinatio 93.7 0.26 5.6E-06 61.6 9.8 83 176-265 60-148 (790)
397 COG4608 AppF ABC-type oligopep 93.7 0.22 4.7E-06 53.2 7.8 124 176-302 39-178 (268)
398 PRK09435 membrane ATPase/prote 93.7 0.51 1.1E-05 53.3 11.3 32 173-204 53-84 (332)
399 PRK00625 shikimate kinase; Pro 93.7 0.052 1.1E-06 55.2 3.2 24 178-201 2-25 (173)
400 cd00544 CobU Adenosylcobinamid 93.7 0.22 4.8E-06 50.4 7.6 81 179-265 2-83 (169)
401 PF06745 KaiC: KaiC; InterPro 93.6 0.12 2.7E-06 55.8 6.3 54 176-233 19-72 (226)
402 PRK06731 flhF flagellar biosyn 93.6 0.37 8.1E-06 52.7 9.9 91 175-267 74-166 (270)
403 cd03247 ABCC_cytochrome_bd The 93.6 0.26 5.7E-06 50.9 8.4 25 177-201 29-53 (178)
404 TIGR02655 circ_KaiC circadian 93.5 0.29 6.2E-06 59.4 9.8 54 176-234 263-316 (484)
405 PF00006 ATP-synt_ab: ATP synt 93.5 0.3 6.4E-06 51.5 8.5 87 177-267 16-117 (215)
406 PRK04040 adenylate kinase; Pro 93.5 0.066 1.4E-06 55.5 3.7 25 177-201 3-27 (188)
407 COG0194 Gmk Guanylate kinase [ 93.5 0.33 7.1E-06 48.6 8.2 25 176-200 4-28 (191)
408 PRK00409 recombination and DNA 93.5 0.29 6.3E-06 62.5 10.0 179 174-373 325-525 (782)
409 PHA02774 E1; Provisional 93.4 0.15 3.2E-06 60.6 6.7 50 163-216 420-470 (613)
410 PF13306 LRR_5: Leucine rich r 93.4 0.18 3.9E-06 48.8 6.5 116 526-652 10-129 (129)
411 PRK05342 clpX ATP-dependent pr 93.4 0.2 4.3E-06 58.6 7.8 46 156-201 72-133 (412)
412 TIGR00764 lon_rel lon-related 93.4 0.16 3.5E-06 62.9 7.4 79 152-234 15-93 (608)
413 TIGR00750 lao LAO/AO transport 93.4 0.25 5.4E-06 55.8 8.4 31 173-203 31-61 (300)
414 PF06068 TIP49: TIP49 C-termin 93.4 0.13 2.9E-06 57.2 5.8 53 154-206 23-80 (398)
415 cd03238 ABC_UvrA The excision 93.4 0.32 7E-06 49.6 8.4 120 176-308 21-161 (176)
416 PRK12597 F0F1 ATP synthase sub 93.4 0.27 5.9E-06 57.8 8.8 92 175-267 142-249 (461)
417 TIGR01360 aden_kin_iso1 adenyl 93.4 0.066 1.4E-06 56.1 3.5 27 175-201 2-28 (188)
418 cd03283 ABC_MutS-like MutS-lik 93.4 0.28 6.2E-06 51.4 8.2 24 177-200 26-49 (199)
419 TIGR03305 alt_F1F0_F1_bet alte 93.3 0.3 6.4E-06 57.1 8.9 92 175-267 137-244 (449)
420 cd01125 repA Hexameric Replica 93.3 0.33 7.2E-06 52.9 9.0 54 178-231 3-67 (239)
421 TIGR00235 udk uridine kinase. 93.3 0.079 1.7E-06 56.3 4.0 27 175-201 5-31 (207)
422 PF07724 AAA_2: AAA domain (Cd 93.3 0.083 1.8E-06 53.7 3.9 43 176-219 3-45 (171)
423 PF12061 DUF3542: Protein of u 93.3 0.33 7.1E-06 51.8 8.1 74 15-90 296-370 (402)
424 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.63 1.4E-05 50.4 11.0 54 176-234 20-73 (229)
425 PRK05917 DNA polymerase III su 93.1 1.8 3.8E-05 47.7 14.0 38 164-201 6-44 (290)
426 PF12775 AAA_7: P-loop contain 93.1 0.065 1.4E-06 59.1 3.1 89 165-267 23-112 (272)
427 PRK00131 aroK shikimate kinase 93.1 0.077 1.7E-06 54.8 3.5 26 176-201 4-29 (175)
428 PRK01184 hypothetical protein; 93.1 0.4 8.6E-06 49.9 8.9 23 177-200 2-24 (184)
429 PRK05973 replicative DNA helic 93.1 0.33 7.1E-06 51.9 8.2 48 176-227 64-111 (237)
430 PRK10416 signal recognition pa 93.1 0.73 1.6E-05 52.1 11.4 38 175-214 113-150 (318)
431 KOG3864 Uncharacterized conser 93.1 0.023 5E-07 56.9 -0.5 68 818-887 122-189 (221)
432 COG1936 Predicted nucleotide k 93.0 0.069 1.5E-06 52.3 2.7 20 178-197 2-21 (180)
433 COG1136 SalX ABC-type antimicr 93.0 0.37 8.1E-06 50.6 8.2 24 177-200 32-55 (226)
434 PF02374 ArsA_ATPase: Anion-tr 93.0 0.15 3.4E-06 57.2 5.9 47 177-225 2-48 (305)
435 cd03216 ABC_Carb_Monos_I This 93.0 0.17 3.6E-06 51.4 5.6 115 177-298 27-146 (163)
436 cd03223 ABCD_peroxisomal_ALDP 92.9 0.48 1E-05 48.2 8.9 125 177-308 28-160 (166)
437 KOG1532 GTPase XAB1, interacts 92.9 0.12 2.5E-06 54.1 4.3 35 176-210 19-53 (366)
438 PF03205 MobB: Molybdopterin g 92.9 0.11 2.4E-06 50.7 4.0 39 177-216 1-39 (140)
439 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.9 0.42 9.2E-06 47.2 8.1 100 177-299 27-132 (144)
440 PRK14529 adenylate kinase; Pro 92.8 0.32 6.9E-06 51.5 7.6 84 179-267 3-88 (223)
441 PF13086 AAA_11: AAA domain; P 92.8 0.19 4.1E-06 54.8 6.3 23 178-200 19-41 (236)
442 PF09848 DUF2075: Uncharacteri 92.8 0.3 6.5E-06 56.7 8.2 41 177-217 2-42 (352)
443 COG0467 RAD55 RecA-superfamily 92.8 0.13 2.9E-06 56.9 5.0 56 174-234 21-76 (260)
444 cd03228 ABCC_MRP_Like The MRP 92.8 0.27 5.8E-06 50.4 6.9 26 176-201 28-53 (171)
445 PRK05800 cobU adenosylcobinami 92.8 0.26 5.7E-06 50.0 6.7 24 178-201 3-26 (170)
446 PRK08927 fliI flagellum-specif 92.7 0.38 8.2E-06 56.1 8.6 89 175-267 157-260 (442)
447 TIGR03574 selen_PSTK L-seryl-t 92.7 0.37 8E-06 52.9 8.2 25 178-202 1-25 (249)
448 PF03266 NTPase_1: NTPase; In 92.6 0.1 2.2E-06 52.8 3.5 24 179-202 2-25 (168)
449 TIGR00150 HI0065_YjeE ATPase, 92.6 0.21 4.6E-06 47.8 5.3 26 177-202 23-48 (133)
450 PRK08972 fliI flagellum-specif 92.6 0.29 6.3E-06 56.8 7.4 88 176-267 162-264 (444)
451 KOG0737 AAA+-type ATPase [Post 92.6 1 2.2E-05 49.9 11.2 27 176-202 127-153 (386)
452 cd03246 ABCC_Protease_Secretio 92.6 0.41 8.9E-06 49.1 8.0 25 177-201 29-53 (173)
453 TIGR00382 clpX endopeptidase C 92.6 0.44 9.6E-06 55.4 9.0 46 156-201 78-141 (413)
454 cd00046 DEXDc DEAD-like helica 92.6 0.25 5.5E-06 48.4 6.4 36 178-213 2-37 (144)
455 PRK09280 F0F1 ATP synthase sub 92.5 0.51 1.1E-05 55.4 9.3 93 174-267 142-250 (463)
456 TIGR01650 PD_CobS cobaltochela 92.5 0.33 7.1E-06 54.2 7.4 61 156-223 46-106 (327)
457 cd00227 CPT Chloramphenicol (C 92.5 0.099 2.1E-06 53.8 3.3 25 177-201 3-27 (175)
458 PRK13407 bchI magnesium chelat 92.5 0.15 3.2E-06 57.7 4.9 48 153-200 6-53 (334)
459 KOG0473 Leucine-rich repeat pr 92.5 0.0057 1.2E-07 61.9 -5.6 83 553-635 39-122 (326)
460 TIGR01817 nifA Nif-specific re 92.5 0.68 1.5E-05 57.3 11.1 50 152-201 193-244 (534)
461 PRK06217 hypothetical protein; 92.4 0.095 2.1E-06 54.4 3.0 34 178-212 3-38 (183)
462 cd02024 NRK1 Nicotinamide ribo 92.4 0.091 2E-06 54.0 2.8 23 178-200 1-23 (187)
463 COG1120 FepC ABC-type cobalami 92.4 0.38 8.3E-06 51.6 7.5 26 176-201 28-53 (258)
464 PRK05201 hslU ATP-dependent pr 92.4 0.25 5.4E-06 56.6 6.4 46 156-201 16-75 (443)
465 PRK13768 GTPase; Provisional 92.4 0.54 1.2E-05 51.5 8.9 36 177-214 3-38 (253)
466 cd02021 GntK Gluconate kinase 92.4 0.092 2E-06 52.5 2.7 24 178-201 1-24 (150)
467 PF13604 AAA_30: AAA domain; P 92.3 0.25 5.5E-06 51.7 6.1 30 174-203 16-45 (196)
468 PRK08149 ATP synthase SpaL; Va 92.3 0.37 7.9E-06 56.1 7.8 89 175-267 150-253 (428)
469 cd02020 CMPK Cytidine monophos 92.3 0.1 2.2E-06 52.0 2.9 24 178-201 1-24 (147)
470 PRK10751 molybdopterin-guanine 92.2 0.15 3.3E-06 51.3 4.1 29 175-203 5-33 (173)
471 COG1121 ZnuC ABC-type Mn/Zn tr 92.2 0.35 7.5E-06 51.7 6.9 24 177-200 31-54 (254)
472 TIGR02030 BchI-ChlI magnesium 92.2 0.2 4.3E-06 56.9 5.5 47 154-200 3-49 (337)
473 PRK13947 shikimate kinase; Pro 92.2 0.11 2.4E-06 53.4 3.2 24 178-201 3-26 (171)
474 cd03222 ABC_RNaseL_inhibitor T 92.2 0.4 8.6E-06 49.0 7.2 26 176-201 25-50 (177)
475 TIGR02655 circ_KaiC circadian 92.2 0.64 1.4E-05 56.4 10.1 56 175-234 20-75 (484)
476 TIGR02322 phosphon_PhnN phosph 92.1 0.12 2.5E-06 53.6 3.3 25 177-201 2-26 (179)
477 PRK15429 formate hydrogenlyase 92.1 0.35 7.7E-06 61.7 8.3 61 154-216 375-437 (686)
478 KOG0651 26S proteasome regulat 92.1 0.24 5.2E-06 53.1 5.4 71 176-266 166-236 (388)
479 PRK13949 shikimate kinase; Pro 92.1 0.12 2.6E-06 52.6 3.2 24 178-201 3-26 (169)
480 PRK14530 adenylate kinase; Pro 92.1 0.12 2.6E-06 55.3 3.3 25 177-201 4-28 (215)
481 CHL00081 chlI Mg-protoporyphyr 92.0 0.18 3.9E-06 57.2 4.8 49 153-201 15-63 (350)
482 TIGR00455 apsK adenylylsulfate 92.0 1.1 2.4E-05 46.5 10.5 29 174-202 16-44 (184)
483 TIGR01041 ATP_syn_B_arch ATP s 92.0 0.52 1.1E-05 55.6 8.6 93 175-267 140-250 (458)
484 PF08298 AAA_PrkA: PrkA AAA do 92.0 1.6 3.4E-05 49.0 11.8 79 155-238 61-152 (358)
485 COG3854 SpoIIIAA ncharacterize 92.0 0.36 7.8E-06 49.4 6.2 120 167-296 128-255 (308)
486 cd02028 UMPK_like Uridine mono 92.0 0.12 2.6E-06 53.2 3.1 25 178-202 1-25 (179)
487 PRK12339 2-phosphoglycerate ki 92.0 0.14 3E-06 53.3 3.6 26 176-201 3-28 (197)
488 COG0714 MoxR-like ATPases [Gen 92.0 0.31 6.8E-06 56.0 6.8 64 157-227 26-89 (329)
489 TIGR02902 spore_lonB ATP-depen 91.9 0.17 3.8E-06 61.7 4.9 51 151-201 61-111 (531)
490 PF05970 PIF1: PIF1-like helic 91.9 0.29 6.3E-06 56.9 6.6 40 163-202 9-48 (364)
491 KOG0079 GTP-binding protein H- 91.9 0.088 1.9E-06 49.1 1.7 84 180-269 12-95 (198)
492 KOG0736 Peroxisome assembly fa 91.9 2.2 4.8E-05 51.9 13.5 169 157-349 403-599 (953)
493 PF00625 Guanylate_kin: Guanyl 91.9 0.21 4.5E-06 51.9 4.8 38 176-215 2-39 (183)
494 cd03214 ABC_Iron-Siderophores_ 91.8 0.63 1.4E-05 48.1 8.3 120 176-299 25-163 (180)
495 TIGR01040 V-ATPase_V1_B V-type 91.8 0.61 1.3E-05 54.3 8.8 93 175-267 140-259 (466)
496 PRK06002 fliI flagellum-specif 91.8 0.47 1E-05 55.4 7.8 89 176-267 165-266 (450)
497 TIGR01287 nifH nitrogenase iro 91.7 0.2 4.4E-06 56.0 4.9 40 177-218 1-40 (275)
498 PRK13975 thymidylate kinase; P 91.7 0.15 3.2E-06 53.8 3.6 26 177-202 3-28 (196)
499 PF13504 LRR_7: Leucine rich r 91.7 0.098 2.1E-06 29.9 1.2 16 602-617 2-17 (17)
500 KOG2170 ATPase of the AAA+ sup 91.7 0.51 1.1E-05 50.6 7.3 98 157-267 84-190 (344)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-78 Score=745.02 Aligned_cols=591 Identities=28% Similarity=0.477 Sum_probs=456.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHHHHHHHHhhhcccccccc--------cc------
Q 000635 33 TSSFENLKKEVEKLRGERESMRQRVEEAERNRQEIEKNVEKWLERVNKIIDETVKITGDEETAT--------KH------ 98 (1380)
Q Consensus 33 ~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~--------~~------ 98 (1380)
...+.+.++.+..|++++..++.+++||+++ +.....+..|.+.+++++|++++.++.+..+. .+
T Consensus 20 ~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~ 98 (889)
T KOG4658|consen 20 SECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVER 98 (889)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHH
Confidence 3356688889999999999999999999998 45567899999999999999999875332110 11
Q ss_pred ---cccCCC-cChHHHhHHHHHHHHHHHHHHHHHHhcCCCCceeec-cCCCccccccccccccccchHHHHHHHHHHhcC
Q 000635 99 ---CIKGLC-PNLKTRYQLSKKAATLVKDIVELREEASKFPKVSYR-TIPEDIWFHSIKGYEAFESRLSTLKSIRNALTD 173 (1380)
Q Consensus 99 ---~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~ 173 (1380)
|+.+++ ..+..-+.+++++..+...++.+.. ++.|..+... .+++.+...|...... ||.++.++++.+.|.+
T Consensus 99 ~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 99 QRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGS-KGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred HHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcc-ccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 111111 1222333444444444444444432 2223333221 1111222223333333 9999999999999998
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhh-hcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccc---hHHHHHHHHH
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAK-EDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREES---ESRRASSLYE 249 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~l~~ 249 (1380)
++..+++|+||||+||||||++++++.. ++.+||.++||.||+.++..+++.+|+..++....... ..+.+..+.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 8779999999999999999999999998 89999999999999999999999999999988543332 2345566666
Q ss_pred HHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCC-
Q 000635 250 RLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDD- 327 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~- 327 (1380)
.|. ++||+||+||||+..+|+. ++.++|....|+||++|||+..|+.. +++...++++.|+++|||.||++.++..
T Consensus 257 ~L~-~krfllvLDDIW~~~dw~~-I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 257 LLE-GKRFLLVLDDIWEEVDWDK-IGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred Hhc-cCceEEEEecccccccHHh-cCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccc
Confidence 665 8999999999999999999 99999999999999999999999997 8888999999999999999999999554
Q ss_pred -ccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcC-ChhHHHHHHHHhcCCCccccCCCchhhhhhHHHhhccCCchhHH
Q 000635 328 -VENRRLKSIATQVAKACGGLPIALTTIAKALRKK-SVPEWENALQELRRPSMESFQGVPKEAYSTIELSYKYLEGEKLK 405 (1380)
Q Consensus 328 -~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk 405 (1380)
...+.++++|++|+++|+|+|||+.++|+.|+.+ +..+|+++.+.+......+..+....+++++.+||+.||++ +|
T Consensus 335 ~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK 413 (889)
T KOG4658|consen 335 LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LK 413 (889)
T ss_pred ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HH
Confidence 3334589999999999999999999999999999 78899999999877755555555567999999999999954 99
Q ss_pred HHHHhccCCCCCCChH--HHHHHHHhhcccccccchHHHHHHHHHHHHHHhhccceeeeC---CCCcEEecHHHHHHHHH
Q 000635 406 KMFLLCSLMPNPCYTL--DLLKYCMGLGMFQRVHKLEDARTKMHAWVHELVDSCLLLVDD---SGDNFSMHDVVRDVAIS 480 (1380)
Q Consensus 406 ~~~~~~a~fp~~~~~~--~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~mHdlv~~~~~~ 480 (1380)
.||+|||+||+|+.++ .|+.+|+||||+++....+.+++++++|+++|++++|++... ...+|+|||+||++|.+
T Consensus 414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW 493 (889)
T ss_pred HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence 9999999999998775 899999999999886667778899999999999999998765 33679999999999999
Q ss_pred Hhh-----cCceeEEecCCccCCCCCcccccceeEEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCC
Q 000635 481 IAC-----RDEHTFLVRNEDVWDWPDEDEKKECYAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGM 555 (1380)
Q Consensus 481 ~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l 555 (1380)
+++ +++.++ ..+.+..+.+....+..+|++++.+|.+..++....+++|++|.+.+|..... .++..+|..+
T Consensus 494 ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~--~is~~ff~~m 570 (889)
T KOG4658|consen 494 IASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL--EISGEFFRSL 570 (889)
T ss_pred HhccccccccceEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh--hcCHHHHhhC
Confidence 998 565332 23334555666667889999999999999999999999999999997754122 3788889999
Q ss_pred CCccEEEecCc-ccccccccccCCCCCCEEEecCCCCCC-cccccCCccccEEEcccCCC-ccCChhhhccccccEEecc
Q 000635 556 RKLRVVHFSGM-RLASLPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDI-VMLPKEIGQLTKLRLLDLT 632 (1380)
Q Consensus 556 ~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l-~~lp~~i~~L~~L~~L~L~ 632 (1380)
+.||||||++| .+.++|++|+.|.|||||+++++.++. |.++++|+.|.|||+..+.- ..+|..+..|.+||+|.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 99999999975 346788877777777776666666555 55555555555555554422 2222223334455554443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.7e-61 Score=630.31 Aligned_cols=695 Identities=22% Similarity=0.311 Sum_probs=450.6
Q ss_pred cccccccchHHHHHHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc---CCC---------
Q 000635 152 KGYEAFESRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV---SQT--------- 217 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~--------- 217 (1380)
.+..+++||++.++++..++. .++.++|+|+||||+||||||+++|++.. ..|++.+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345679999999999999885 56789999999999999999999999877 56998888742 111
Q ss_pred --cC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecch
Q 000635 218 --PD-IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDR 294 (1380)
Q Consensus 218 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~ 294 (1380)
.. ...++.+++.++....... ......+.+++. ++|+||||||||+..+|+. +.......++|++||||||+.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~-L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDA-LAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHH-HHhhCccCCCCcEEEEEeCcH
Confidence 01 1223344444332111100 001133445554 8999999999999999988 555555567899999999999
Q ss_pred HHHHhhCCCceeeCCCCCHHHHHHHHHhhcC-CCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcCChhHHHHHHHHh
Q 000635 295 SVLLSMGSKENFPIGVLNEQEAWRLFKLTAD-DDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQEL 373 (1380)
Q Consensus 295 ~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l 373 (1380)
.++..++..++|+++.++.++||++|+++|. .....+++.+++++|+++|+|+|||++++|++|+.++..+|..+++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998877888999999999999999999994 344456788999999999999999999999999999999999999998
Q ss_pred cCCCccccCCCchhhhhhHHHhhccCCchhHHHHHHhccCCCCCCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 000635 374 RRPSMESFQGVPKEAYSTIELSYKYLEGEKLKKMFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLEDARTKMHAWVHEL 453 (1380)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk~~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L 453 (1380)
+... +..+.+++++||+.|+++..|.||+++|.|+.+..++. +..|.+.+.... +..++.|
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L 475 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNL 475 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHH
Confidence 6532 23488999999999987436999999999988776654 555666654321 1247899
Q ss_pred hhccceeeeCCCCcEEecHHHHHHHHHHhhcCce-----eEEecCCcc-CCCCCcccccceeEEEeccCCcccCCC----
Q 000635 454 VDSCLLLVDDSGDNFSMHDVVRDVAISIACRDEH-----TFLVRNEDV-WDWPDEDEKKECYAISVRDSSIHELPE---- 523 (1380)
Q Consensus 454 ~~~~ll~~~~~~~~~~mHdlv~~~~~~~~~~e~~-----~~~~~~~~~-~~~~~~~~~~~~r~lsl~~~~~~~l~~---- 523 (1380)
++++|++.. .+.+.|||++|+||++++.++.. .+....... .-+.......+++++++....+.++.-
T Consensus 476 ~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999875 35799999999999999876531 011100000 000011123456777666544433211
Q ss_pred CCCCCCccEEEeccCCC---ccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCC-cccccC
Q 000635 524 GLKCPQLQFLTIANSKD---SFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD-IAIIGK 599 (1380)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~---~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~ 599 (1380)
..++++|+.|.+..+.. ......+|.++..-...||+|++.++.++.+|..| ...+|+.|++++|.+.. +..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 12455555555543321 01111244443222234566666555555555554 34555555555555555 445555
Q ss_pred CccccEEEcccC-CCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccCccccccChh
Q 000635 600 LKNLEVLSFLQS-DIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLD 678 (1380)
Q Consensus 600 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 678 (1380)
+++|++|+++++ .+..+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|... ...+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L-----------~~Lp~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL-----------EILPT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc-----------CccCC
Confidence 555555555554 3444442 555555555555555555555544 555555555555554321 11111
Q ss_pred hhcCCCCCcEEEEEecCC-CCCCCcccccccceeeeeecCCCCCCcccccccccCCCCccccccccceeEEEeecCCCCC
Q 000635 679 EFLHLPRLTTLEIEVRND-DILPEGFFTKKLARFKISVGDESFSTPFYFVESWFSSRPNFMIGKHESLRTLKLKLSSKPI 757 (1380)
Q Consensus 679 ~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 757 (1380)
.+ ++++|+.|+++++.. ..+|
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p--------------------------------------------------------- 721 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFP--------------------------------------------------------- 721 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccc---------------------------------------------------------
Confidence 11 334444444443221 0000
Q ss_pred CcccccCcceeeEEeeccCCChhhhhhcccccCCCCccEEEeecCCCCcccccCCCCccCCcccccceeecccccccccc
Q 000635 758 GSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQLKHLHIQNNPDLLCIVDSRDRETYDAFPLLESLTLQNLIRLERT 837 (1380)
Q Consensus 758 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 837 (1380)
....+|+.|++.++... .++.. ..+++|++|.+.++.... +.. ....++
T Consensus 722 -----~~~~nL~~L~L~~n~i~-~lP~~---~~l~~L~~L~l~~~~~~~-l~~-----~~~~l~---------------- 770 (1153)
T PLN03210 722 -----DISTNISWLDLDETAIE-EFPSN---LRLENLDELILCEMKSEK-LWE-----RVQPLT---------------- 770 (1153)
T ss_pred -----cccCCcCeeecCCCccc-ccccc---ccccccccccccccchhh-ccc-----cccccc----------------
Confidence 00123444444443311 11111 135566666665542110 000 000000
Q ss_pred cccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcchhhHhhcCCccccCCccccccccccccceee
Q 000635 838 CMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKMEEVFAIGGEADVGNKNAIEKIEFAQLKSLS 917 (1380)
Q Consensus 838 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 917 (1380)
......+++|+.|.+++|+.+..+|. .+.++++|+.|++++|..++.+|. ...+++|+.|+
T Consensus 771 ---~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~--------------~~~L~sL~~L~ 831 (1153)
T PLN03210 771 ---PLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT--------------GINLESLESLD 831 (1153)
T ss_pred ---hhhhhccccchheeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC--------------CCCccccCEEE
Confidence 00112357889999999988887764 577899999999999998888774 12688999999
Q ss_pred cCCCcCccccccccCCCCCCCCCccccccccccccccccceeecccccccccccccccccccCCCCCCCCCCCCCccEEE
Q 000635 918 LGMLPKVTNFFREVKTPPASPNRRESEEDELDTSIQLLNEKVVLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLI 997 (1380)
Q Consensus 918 l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~ 997 (1380)
+++|..+..++. ..++|+.|++++|++..+ |..+..+++|+.|+
T Consensus 832 Ls~c~~L~~~p~------------------------------~~~nL~~L~Ls~n~i~~i------P~si~~l~~L~~L~ 875 (1153)
T PLN03210 832 LSGCSRLRTFPD------------------------------ISTNISDLNLSRTGIEEV------PWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCCCccccccc------------------------------cccccCEeECCCCCCccC------hHHHhcCCCCCEEE
Confidence 999998876543 146899999999988855 66778899999999
Q ss_pred eccccccccccchhhHhhhccccEEEEecccccccc
Q 000635 998 LWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEI 1033 (1380)
Q Consensus 998 l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 1033 (1380)
+++|++|+.++. ....+++|+.|++++|.++..+
T Consensus 876 L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 876 MNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 999999999843 3567899999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4e-38 Score=357.02 Aligned_cols=273 Identities=36% Similarity=0.582 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHhcC--CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcc-
Q 000635 160 RLSTLKSIRNALTD--PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLR- 236 (1380)
Q Consensus 160 R~~~l~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 236 (1380)
|+.++++|.++|.+ ++.++|+|+||||+||||||.+++++...+.+|+.++|+.+++..+..+++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 788999999999999999999999997777899999999999999999999999999988743
Q ss_pred ---ccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHhhCC-CceeeCCCCC
Q 000635 237 ---EESESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSMGS-KENFPIGVLN 312 (1380)
Q Consensus 237 ---~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~~~~-~~~~~l~~L~ 312 (1380)
.....+....+.+.+. ++++||||||||+...|+. +..+++....|++||||||+..++..+.. ...+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~-l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEE-LREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH--------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccchhhhc-cccceeeeeeecccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 2334445566666665 7799999999999998987 66667777779999999999988876554 6789999999
Q ss_pred HHHHHHHHHhhcCCCc--cChhhHHHHHHHHHHhCCChHHHHHHHHHhhcC-ChhHHHHHHHHhcCCCccccCCCchhhh
Q 000635 313 EQEAWRLFKLTADDDV--ENRRLKSIATQVAKACGGLPIALTTIAKALRKK-SVPEWENALQELRRPSMESFQGVPKEAY 389 (1380)
Q Consensus 313 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~ 389 (1380)
.+||++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+ +..+|..+++++...... ..+....+.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~ 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 9999999999985433 334456779999999999999999999999666 778899999887544322 222456799
Q ss_pred hhHHHhhccCCchhHHHHHHhccCCCCCCCh--HHHHHHHHhhcccccc
Q 000635 390 STIELSYKYLEGEKLKKMFLLCSLMPNPCYT--LDLLKYCMGLGMFQRV 436 (1380)
Q Consensus 390 ~~l~~s~~~L~~~~lk~~~~~~a~fp~~~~~--~~li~~w~~~g~~~~~ 436 (1380)
.++.+||+.||++ +|+||.|||+||+++.+ +.++++|+++|++...
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999997 89999999999988764 6899999999998753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-33 Score=373.50 Aligned_cols=533 Identities=19% Similarity=0.168 Sum_probs=276.9
Q ss_pred cceeEEEeccCCcccCC-CC-CCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc-cccccccCCCCCC
Q 000635 506 KECYAISVRDSSIHELP-EG-LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA-SLPYSIGLLQNLQ 582 (1380)
Q Consensus 506 ~~~r~lsl~~~~~~~l~-~~-~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~ 582 (1380)
.+++.|+++++.+.... .. ..+++|++|++++|... +.+|.++|.++++||+|+|++|.+. .+|. +.+++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 35677777766654322 21 25666666666655432 2356666556666666666666665 3343 3456666
Q ss_pred EEEecCCCCCC--cccccCCccccEEEcccCCCc-cCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEcccc
Q 000635 583 TLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIV-MLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNC 659 (1380)
Q Consensus 583 ~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 659 (1380)
+|+|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 222 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN 222 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC
Confidence 66666666543 555666666666666666554 55666666666666666666433344443 566666666666665
Q ss_pred ccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeeeeecCCCCCCcccccccccCCCCcccc
Q 000635 660 YVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKISVGDESFSTPFYFVESWFSSRPNFMI 739 (1380)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 739 (1380)
.+. ...+..++++++|++|++++|....
T Consensus 223 ~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~----------------------------------------- 250 (968)
T PLN00113 223 NLS-----------GEIPYEIGGLTSLNHLDLVYNNLTG----------------------------------------- 250 (968)
T ss_pred ccC-----------CcCChhHhcCCCCCEEECcCceecc-----------------------------------------
Confidence 443 2334455555555555555443211
Q ss_pred ccccceeEEEeecCCCCCCcccccCcceeeEEeeccCCChhhhhhcccccCCCCccEEEeecCCCCcccccCCCCccCCc
Q 000635 740 GKHESLRTLKLKLSSKPIGSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQLKHLHIQNNPDLLCIVDSRDRETYDA 819 (1380)
Q Consensus 740 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 819 (1380)
..+..+ ..+++|+.|++++|.-...
T Consensus 251 -----------------------------------------~~p~~l--~~l~~L~~L~L~~n~l~~~------------ 275 (968)
T PLN00113 251 -----------------------------------------PIPSSL--GNLKNLQYLFLYQNKLSGP------------ 275 (968)
T ss_pred -----------------------------------------ccChhH--hCCCCCCEEECcCCeeecc------------
Confidence 000001 2455666666655521000
Q ss_pred ccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcchhhHhhcCCcccc
Q 000635 820 FPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKMEEVFAIGGEADV 899 (1380)
Q Consensus 820 ~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 899 (1380)
++. ....+++|+.|++++|.....+| ..+..+++|+.|++++|.....++.
T Consensus 276 -----------------~p~---~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~~------- 326 (968)
T PLN00113 276 -----------------IPP---SIFSLQKLISLDLSDNSLSGEIP--ELVIQLQNLEILHLFSNNFTGKIPV------- 326 (968)
T ss_pred -----------------Cch---hHhhccCcCEEECcCCeeccCCC--hhHcCCCCCcEEECCCCccCCcCCh-------
Confidence 000 11234566666666654222222 2344555666666655432221111
Q ss_pred CCccccccccccccceeecCCCcCccccccccCCCCCCCCCccccccccccccccccceeeccccccccccccccccccc
Q 000635 900 GNKNAIEKIEFAQLKSLSLGMLPKVTNFFREVKTPPASPNRRESEEDELDTSIQLLNEKVVLPNLEALELRDINIDKIWH 979 (1380)
Q Consensus 900 ~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~ 979 (1380)
....+++|+.|++++|++...
T Consensus 327 ---------------------------------------------------------~~~~l~~L~~L~L~~n~l~~~-- 347 (968)
T PLN00113 327 ---------------------------------------------------------ALTSLPRLQVLQLWSNKFSGE-- 347 (968)
T ss_pred ---------------------------------------------------------hHhcCCCCCEEECcCCCCcCc--
Confidence 111256666777766655422
Q ss_pred CCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccccccCCCCCeeecccccceec
Q 000635 980 YNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRAEADQRTTPCFVFPRLTTLIL 1059 (1380)
Q Consensus 980 ~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~p~L~~L~L 1059 (1380)
+|..+..+++|+.|++++|. ++... +..+..+++|+.|++++|.....++. ....+++|+.|++
T Consensus 348 ---~p~~l~~~~~L~~L~Ls~n~-l~~~~-p~~~~~~~~L~~L~l~~n~l~~~~p~-----------~~~~~~~L~~L~L 411 (968)
T PLN00113 348 ---IPKNLGKHNNLTVLDLSTNN-LTGEI-PEGLCSSGNLFKLILFSNSLEGEIPK-----------SLGACRSLRRVRL 411 (968)
T ss_pred ---CChHHhCCCCCcEEECCCCe-eEeeC-ChhHhCcCCCCEEECcCCEecccCCH-----------HHhCCCCCCEEEC
Confidence 45666777888999998865 43321 33455677888888887764332211 0113566666666
Q ss_pred ccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccCCCccccccceEEEeeCCCCcccchHHHhhccc
Q 000635 1060 LGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGDFPHHLFGCLKQVAVATDESECFPLGLLERFLN 1139 (1380)
Q Consensus 1060 ~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~~l~~l~~ 1139 (1380)
.+|. ++...+..+.. +++|+.|++++|.+....+ ..+..+++
T Consensus 412 ~~n~-l~~~~p~~~~~-----------l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~l~~ 453 (968)
T PLN00113 412 QDNS-FSGELPSEFTK-----------LPLVYFLDISNNNLQGRIN--------------------------SRKWDMPS 453 (968)
T ss_pred cCCE-eeeECChhHhc-----------CCCCCEEECcCCcccCccC--------------------------hhhccCCC
Confidence 6643 22211111111 4455555555554443332 22334566
Q ss_pred CceEEEeccceEEEeccCccccccccccccccceEecccccccccccCCCCchhhhhhcceeEeeecccccccccCCccc
Q 000635 1140 MEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNSKLEHILQYLEKLFVSYCQSLLILLPSASI 1219 (1380)
Q Consensus 1140 L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~p~~~~ 1219 (1380)
|+.|++++|...+.+|.. ...++|+.|++++|.--..+ +..+..+++|+.|++++| .+....|..+.
T Consensus 454 L~~L~L~~n~~~~~~p~~--------~~~~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~ 520 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDS--------FGSKRLENLDLSRNQFSGAV----PRKLGSLSELMQLKLSEN-KLSGEIPDELS 520 (968)
T ss_pred CcEEECcCceeeeecCcc--------cccccceEEECcCCccCCcc----ChhhhhhhccCEEECcCC-cceeeCChHHc
Confidence 666666666655444321 12355666666654322222 333455666666666663 33333355566
Q ss_pred cccccCEEEeccCcCcccccchHHHhhcccccEEEEecccCcceeeccCCCCCCCCCccccccccceeeeccCCCccccc
Q 000635 1220 SFRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCRAMTEVVTGDENGAANPKEEIVFTKLKSISLVDLDSLTSFC 1299 (1380)
Q Consensus 1220 ~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~ 1299 (1380)
.+++|++|+|++ +.++...+ ..+..+++|+.|++++|.-...+|. .+..+++|+.|++++|+-..++|
T Consensus 521 ~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 521 SCKKLVSLDLSH-NQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPK----------NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CccCCCEEECCC-CcccccCC-hhHhCcccCCEEECCCCcccccCCh----------hHhcCcccCEEeccCCcceeeCC
Confidence 666666666666 33443333 3445666666666666654444443 44556666666666666555566
Q ss_pred CCCccccCCCccEEEEeccCCc
Q 000635 1300 SANYTFNFPSLQDLEVIGCPKM 1321 (1380)
Q Consensus 1300 ~~~~~~~~~sL~~L~i~~Cp~l 1321 (1380)
..+. +.++....+.+.|.+
T Consensus 589 ~~~~---~~~~~~~~~~~n~~l 607 (968)
T PLN00113 589 STGA---FLAINASAVAGNIDL 607 (968)
T ss_pred Ccch---hcccChhhhcCCccc
Confidence 5422 233333444444433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-33 Score=372.55 Aligned_cols=489 Identities=17% Similarity=0.154 Sum_probs=306.9
Q ss_pred cccceeEEEeccCCcc-cCCCCC--CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc-cccccccCCC
Q 000635 504 EKKECYAISVRDSSIH-ELPEGL--KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA-SLPYSIGLLQ 579 (1380)
Q Consensus 504 ~~~~~r~lsl~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~ 579 (1380)
..++++.|++++|.+. .+|... .+++||.|++++|... +.+|. ..+++|++|++++|.+. .+|..+++++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---cccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 3678999999999985 677643 7899999999977653 23664 45899999999999997 6799999999
Q ss_pred CCCEEEecCCCCCC--cccccCCccccEEEcccCCCc-cCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEc
Q 000635 580 NLQTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIV-MLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYM 656 (1380)
Q Consensus 580 ~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 656 (1380)
+|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 99999999999765 788999999999999999877 68999999999999999998755566765 899999999999
Q ss_pred cccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCC-CCCcccccccceeeeeecCCCCCCcccccccccCCCC
Q 000635 657 HNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDI-LPEGFFTKKLARFKISVGDESFSTPFYFVESWFSSRP 735 (1380)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p 735 (1380)
++|.+. +..+..++++++|++|+++.|.+.. +|..
T Consensus 244 ~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------------------------------- 279 (968)
T PLN00113 244 VYNNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPS--------------------------------- 279 (968)
T ss_pred cCceec-----------cccChhHhCCCCCCEEECcCCeeeccCchh---------------------------------
Confidence 999765 4566788999999999988665421 1110
Q ss_pred ccccccccceeEEEeecCCCCCCcccccCcceeeEEeeccCCChhhhhhcccccCCCCccEEEeecCCCCcccccCCCCc
Q 000635 736 NFMIGKHESLRTLKLKLSSKPIGSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQLKHLHIQNNPDLLCIVDSRDRE 815 (1380)
Q Consensus 736 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~ 815 (1380)
+ ..+++|++|++++|.-...++ .
T Consensus 280 --------------------------------------------------l--~~l~~L~~L~Ls~n~l~~~~p-----~ 302 (968)
T PLN00113 280 --------------------------------------------------I--FSLQKLISLDLSDNSLSGEIP-----E 302 (968)
T ss_pred --------------------------------------------------H--hhccCcCEEECcCCeeccCCC-----h
Confidence 0 245677788887764221221 1
Q ss_pred cCCcccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcchhhHhhcCC
Q 000635 816 TYDAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKMEEVFAIGG 895 (1380)
Q Consensus 816 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 895 (1380)
....+++|+.|++.++......+. ....+++|+.|++.+|.....+|. .+..+++|+.|++++|.....++.
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~--- 374 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPV---ALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPE--- 374 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCCh---hHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCCh---
Confidence 234567788888776543333322 234577777777777764333332 455677777777777643333322
Q ss_pred ccccCCccccccccccccceeecCCCcCccccccccCCCCCCCCCccccccccccccccccceeeccccccccccccccc
Q 000635 896 EADVGNKNAIEKIEFAQLKSLSLGMLPKVTNFFREVKTPPASPNRRESEEDELDTSIQLLNEKVVLPNLEALELRDINID 975 (1380)
Q Consensus 896 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 975 (1380)
....+++|+.|.+.+++-...++. ....+++|+.|++++|++.
T Consensus 375 ----------~~~~~~~L~~L~l~~n~l~~~~p~---------------------------~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 375 ----------GLCSSGNLFKLILFSNSLEGEIPK---------------------------SLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ----------hHhCcCCCCEEECcCCEecccCCH---------------------------HHhCCCCCCEEECcCCEee
Confidence 223456666666666443222111 1123566667777666655
Q ss_pred ccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccccccCCCCCeeeccccc
Q 000635 976 KIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRAEADQRTTPCFVFPRLT 1055 (1380)
Q Consensus 976 ~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~p~L~ 1055 (1380)
.. .|..|..+++|+.|++++|. ++... +..+..+++|+.|++++|.....++. ....++|+
T Consensus 418 ~~-----~p~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~p~------------~~~~~~L~ 478 (968)
T PLN00113 418 GE-----LPSEFTKLPLVYFLDISNNN-LQGRI-NSRKWDMPSLQMLSLARNKFFGGLPD------------SFGSKRLE 478 (968)
T ss_pred eE-----CChhHhcCCCCCEEECcCCc-ccCcc-ChhhccCCCCcEEECcCceeeeecCc------------ccccccce
Confidence 32 35555666667777776644 33332 22334566666666666654332211 01234566
Q ss_pred ceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccCCCccccccceEEEeeCCCCcccchHHHh
Q 000635 1056 TLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGDFPHHLFGCLKQVAVATDESECFPLGLLE 1135 (1380)
Q Consensus 1056 ~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~~l~ 1135 (1380)
.|++++|. ++...+..+.. +++|+.|++++|.+....+..+ ..+++|++|++++|.+.......+.
T Consensus 479 ~L~ls~n~-l~~~~~~~~~~-----------l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 479 NLDLSRNQ-FSGAVPRKLGS-----------LSELMQLKLSENKLSGEIPDEL--SSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred EEECcCCc-cCCccChhhhh-----------hhccCEEECcCCcceeeCChHH--cCccCCCEEECCCCcccccCChhHh
Confidence 66666542 22211111111 4455666666665554444332 2245555666655554443333444
Q ss_pred hcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccc
Q 000635 1136 RFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHL 1185 (1380)
Q Consensus 1136 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l 1185 (1380)
.+++|+.|++++|.....+| ..+..+++|+.|++++|+-...+
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIP-------KNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CcccCCEEECCCCcccccCC-------hhHhcCcccCEEeccCCcceeeC
Confidence 55566666666655544433 23344555555555555433333
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3e-26 Score=240.62 Aligned_cols=256 Identities=20% Similarity=0.175 Sum_probs=149.7
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCccEEEecccccccccc----chhhHhhhccccEEEEeccccccccccc
Q 000635 961 LPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIF----SATMIRSFEQLQRLEISNCMVLQEIISK 1036 (1380)
Q Consensus 961 l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~----~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 1036 (1380)
+.+|+.|++++|.++. +|..++++ .|+.|.+.+.| ++.+- ..+...-+..|+. -..|..+..-
T Consensus 274 LrsL~rLDlSNN~is~------Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs--~~~~dglS~s--- 340 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISS------LPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRS--KIKDDGLSQS--- 340 (565)
T ss_pred hhhhhhhcccCCcccc------CCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHH--hhccCCCCCC---
Confidence 4567777777777764 36667777 78888888866 33221 1111112222222 1112222111
Q ss_pred ccccccCCCCCeeecc------cccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccCCCc
Q 000635 1037 DRAEADQRTTPCFVFP------RLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGDFPH 1110 (1380)
Q Consensus 1037 ~~~~~~~~~~~~~~~p------~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 1110 (1380)
+.+.+.....+...|| +.+.|++++ .+++.+|...+... + -.-....+++.|.+..+....
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~----~-----~~~Vt~VnfskNqL~elPk~L--- 407 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA----K-----SEIVTSVNFSKNQLCELPKRL--- 407 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh----h-----hcceEEEecccchHhhhhhhh---
Confidence 1111110111112233 567777776 46676665433210 0 112456677777766554331
Q ss_pred cccccceEEEeeCCCCcccchHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccccCCCC
Q 000635 1111 HLFGCLKQVAVATDESECFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNS 1190 (1380)
Q Consensus 1111 ~~l~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~ 1190 (1380)
..+..+.+.-+..|....++...+..+++|..|++++|..... |..+.++..|+.|+|+.. .++.+ |
T Consensus 408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L--------P~e~~~lv~Lq~LnlS~N-rFr~l----P 474 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL--------PEEMGSLVRLQTLNLSFN-RFRML----P 474 (565)
T ss_pred HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc--------chhhhhhhhhheeccccc-ccccc----h
Confidence 1123333333344444556666677899999999998875544 233456777899998853 55555 4
Q ss_pred chhhhhhcceeEeeecccccccccCCccccccccCEEEeccCcCcccccchHHHhhcccccEEEEeccc
Q 000635 1191 KLEHILQYLEKLFVSYCQSLLILLPSASISFRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCR 1259 (1380)
Q Consensus 1191 ~~~~~l~~L~~L~i~~C~~l~~~~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 1259 (1380)
.....+..||.+-.++ +++.++.|.++.++.+|++|++.+ +.+..+|+ .++++++|++|++++.+
T Consensus 475 ~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 475 ECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCCh--hhccccceeEEEecCCc
Confidence 4444556666666665 778878777788888999999988 88888875 78899999999998876
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-23 Score=230.84 Aligned_cols=366 Identities=19% Similarity=0.254 Sum_probs=226.4
Q ss_pred CccEEEecCcccccc-cccccCCCCCCEEEecCCCCCC-cccccCCccccEEEcccCCCccCC-hhhhccccccEEeccC
Q 000635 557 KLRVVHFSGMRLASL-PYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLP-KEIGQLTKLRLLDLTD 633 (1380)
Q Consensus 557 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~ 633 (1380)
.-+.||+++|.+..+ +..|.++++|+.+++.+|.+.. |...+...||+.|+|.+|.|.++. +.+..+..|+.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345688888888866 6677888888888888888887 444445566888888888887664 3677788888888888
Q ss_pred ccccccccchhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeee
Q 000635 634 CFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKI 713 (1380)
Q Consensus 634 ~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 713 (1380)
| .+..+|...+..-.++++|+|++|.+. ....+.|..+.+|-.|.|+.|.++.+|
T Consensus 159 N-~is~i~~~sfp~~~ni~~L~La~N~It-----------~l~~~~F~~lnsL~tlkLsrNrittLp------------- 213 (873)
T KOG4194|consen 159 N-LISEIPKPSFPAKVNIKKLNLASNRIT-----------TLETGHFDSLNSLLTLKLSRNRITTLP------------- 213 (873)
T ss_pred c-hhhcccCCCCCCCCCceEEeecccccc-----------ccccccccccchheeeecccCcccccC-------------
Confidence 6 477777776777778888888887765 233345666667777777777665544
Q ss_pred eecCCCCCCcccccccccCCCCccccccccceeEEEeecCCCCCCcccccCcceeeEEeeccCCChhhhhhcccccCCCC
Q 000635 714 SVGDESFSTPFYFVESWFSSRPNFMIGKHESLRTLKLKLSSKPIGSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQ 793 (1380)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 793 (1380)
...|+++++|+.|+|..|...+ ...+...++++
T Consensus 214 ----------------------~r~Fk~L~~L~~LdLnrN~iri-------------------------ve~ltFqgL~S 246 (873)
T KOG4194|consen 214 ----------------------QRSFKRLPKLESLDLNRNRIRI-------------------------VEGLTFQGLPS 246 (873)
T ss_pred ----------------------HHHhhhcchhhhhhccccceee-------------------------ehhhhhcCchh
Confidence 3444556666666665544211 00111234445
Q ss_pred ccEEEeecCCCCcccccCCCCccCCcccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhc
Q 000635 794 LKHLHIQNNPDLLCIVDSRDRETYDAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCL 873 (1380)
Q Consensus 794 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 873 (1380)
|+.|.+..+. +..+ .+ ..+..+
T Consensus 247 l~nlklqrN~-I~kL-----------------------------------------------------~D----G~Fy~l 268 (873)
T KOG4194|consen 247 LQNLKLQRND-ISKL-----------------------------------------------------DD----GAFYGL 268 (873)
T ss_pred hhhhhhhhcC-cccc-----------------------------------------------------cC----cceeee
Confidence 5555444431 1111 00 111223
Q ss_pred ccccEEEEecCcchhhHhhcCCccccCCccccccccccccceeecCCCcCccccccccCCCCCCCCCccccccccccccc
Q 000635 874 HKLERIAVIDCKKMEEVFAIGGEADVGNKNAIEKIEFAQLKSLSLGMLPKVTNFFREVKTPPASPNRRESEEDELDTSIQ 953 (1380)
Q Consensus 874 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1380)
.++++|++.. +++..+..
T Consensus 269 ~kme~l~L~~-N~l~~vn~------------------------------------------------------------- 286 (873)
T KOG4194|consen 269 EKMEHLNLET-NRLQAVNE------------------------------------------------------------- 286 (873)
T ss_pred cccceeeccc-chhhhhhc-------------------------------------------------------------
Confidence 3444444443 12222111
Q ss_pred cccceeecccccccccccccccccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccc
Q 000635 954 LLNEKVVLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEI 1033 (1380)
Q Consensus 954 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 1033 (1380)
+....+++|+.|+++.|.+..+- +..-..+++|+.|++++ ++++.+ +++.+..+..|++|+++++. +..+
T Consensus 287 --g~lfgLt~L~~L~lS~NaI~rih-----~d~WsftqkL~~LdLs~-N~i~~l-~~~sf~~L~~Le~LnLs~Ns-i~~l 356 (873)
T KOG4194|consen 287 --GWLFGLTSLEQLDLSYNAIQRIH-----IDSWSFTQKLKELDLSS-NRITRL-DEGSFRVLSQLEELNLSHNS-IDHL 356 (873)
T ss_pred --ccccccchhhhhccchhhhheee-----cchhhhcccceeEeccc-cccccC-ChhHHHHHHHhhhhcccccc-hHHH
Confidence 11223566667777777665551 22223457888888877 557777 45667777888888877753 1111
Q ss_pred cccccccccCCCCCeeecccccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccC-CCccc
Q 000635 1034 ISKDRAEADQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGD-FPHHL 1112 (1380)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 1112 (1380)
..+.+.. +.+|+.|++++|.+.....+. .+-.+
T Consensus 357 -----------------------------------~e~af~~-----------lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 357 -----------------------------------AEGAFVG-----------LSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred -----------------------------------HhhHHHH-----------hhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 1111110 456666666666665444332 23345
Q ss_pred cccceEEEeeCCCCcccchHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEeccc
Q 000635 1113 FGCLKQVAVATDESECFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVE 1178 (1380)
Q Consensus 1113 l~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 1178 (1380)
+++|+.|.+.+|.+.++|...+..+.+|++|++.+|.+..+-+ ..|..+ .|++|-+..
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~-------nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP-------NAFEPM-ELKELVMNS 448 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc-------cccccc-hhhhhhhcc
Confidence 8889999999999999999999999999999999999777733 445555 788887654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-24 Score=250.66 Aligned_cols=143 Identities=27% Similarity=0.400 Sum_probs=113.6
Q ss_pred EEeccCCcccCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCC
Q 000635 511 ISVRDSSIHELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERS 589 (1380)
Q Consensus 511 lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 589 (1380)
+++++...+-+|..+ ....+..|.+..|.. +. .|-.+..+..+|+.||+++|.+..+|..|..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~--l~--~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSL--LS--RPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhcccccc--cc--CchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh
Confidence 344555555555543 222355555553322 22 4555556667799999999999999999999999999999999
Q ss_pred CCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEcccc
Q 000635 590 TVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNC 659 (1380)
Q Consensus 590 ~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 659 (1380)
.|.. |.+++++.+|++|+|.+|.+..+|.++..+++|++|+++.|. ...+|.- +..++.+..+..++|
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 9988 889999999999999999999999999999999999999984 7778875 788888888888887
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.7e-23 Score=225.22 Aligned_cols=296 Identities=19% Similarity=0.268 Sum_probs=204.9
Q ss_pred cceeEEEeccCCcccCCCC----CCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCC
Q 000635 506 KECYAISVRDSSIHELPEG----LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNL 581 (1380)
Q Consensus 506 ~~~r~lsl~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 581 (1380)
-+.+-++.+.+.+..+... .-.+..++|++++|..+. +...+|.++.+|+.+++.+|.++.+|.......||
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeecccccccc----CcHHHHhcCCcceeeeeccchhhhcccccccccce
Confidence 4456667776666554221 235678899999888776 44667899999999999999999999988888999
Q ss_pred CEEEecCCCCCC--cccccCCccccEEEcccCCCccCCh-hhhccccccEEeccCccccccccchhhcCCCCCcEEEccc
Q 000635 582 QTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIVMLPK-EIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHN 658 (1380)
Q Consensus 582 ~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 658 (1380)
+.|+|.+|.|+. -+.+..+..||.|||+.|.|+++|. ++..-.++++|+|++|. ++.+..+.|..+.+|-+|.|+.
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeeccc
Confidence 999999999988 4779999999999999999998876 56677899999999985 8889888899999999999999
Q ss_pred cccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeeeeecCCCCCCcccccccccCCCCccc
Q 000635 659 CYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKISVGDESFSTPFYFVESWFSSRPNFM 738 (1380)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~ 738 (1380)
|.+. ...+..|++|++|+.|+|..|.+.... ++ .
T Consensus 207 Nrit-----------tLp~r~Fk~L~~L~~LdLnrN~irive-~l----------------------------------t 240 (873)
T KOG4194|consen 207 NRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVE-GL----------------------------------T 240 (873)
T ss_pred Cccc-----------ccCHHHhhhcchhhhhhccccceeeeh-hh----------------------------------h
Confidence 9876 456678999999999999988865432 11 1
Q ss_pred cccccceeEEEeecCCC-CCCcccccCcceeeEEeeccCCChhhh-hhcccccCCCCccEEEeecCCCCcccccCCCCcc
Q 000635 739 IGKHESLRTLKLKLSSK-PIGSKELQGVNNVEYLCLDELPGVKTV-LFELDTKGFSQLKHLHIQNNPDLLCIVDSRDRET 816 (1380)
Q Consensus 739 ~~~l~~L~~L~L~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 816 (1380)
|.++++|+.|.|..|.. ......+.++.+++.|+|..+.....- .|. .++..|+.|+++++. ++.|
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l---fgLt~L~~L~lS~Na-I~ri-------- 308 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL---FGLTSLEQLDLSYNA-IQRI-------- 308 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc---cccchhhhhccchhh-hhee--------
Confidence 24455555555544321 123334555566666666655432211 111 245566666666542 1111
Q ss_pred CCcccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcchhhH
Q 000635 817 YDAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKMEEV 890 (1380)
Q Consensus 817 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 890 (1380)
.... -...++|++|+++.+. ++.+++ ..+..+..|++|.++++ .+..+
T Consensus 309 ---------------------h~d~--WsftqkL~~LdLs~N~-i~~l~~-~sf~~L~~Le~LnLs~N-si~~l 356 (873)
T KOG4194|consen 309 ---------------------HIDS--WSFTQKLKELDLSSNR-ITRLDE-GSFRVLSQLEELNLSHN-SIDHL 356 (873)
T ss_pred ---------------------ecch--hhhcccceeEeccccc-cccCCh-hHHHHHHHhhhhccccc-chHHH
Confidence 1110 0134566666666443 454443 45566777777777763 34433
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.7e-21 Score=258.06 Aligned_cols=269 Identities=22% Similarity=0.289 Sum_probs=125.5
Q ss_pred cccccccccccc-cccccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccc
Q 000635 961 LPNLEALELRDI-NIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRA 1039 (1380)
Q Consensus 961 l~~L~~L~L~~~-~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 1039 (1380)
+++|+.|+++++ ++..+ | .+..+++|+.|++++|..+..++ ..+..+++|+.|++++|..++.++..
T Consensus 633 l~~Lk~L~Ls~~~~l~~i------p-~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~--- 700 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEI------P-DLSMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTG--- 700 (1153)
T ss_pred CCCCCEEECCCCCCcCcC------C-ccccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCc---
Confidence 455555555554 23322 2 13344555555555555555542 23445555555555555555544321
Q ss_pred cccCCCCCeeecccccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccCCCccccccceEE
Q 000635 1040 EADQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGDFPHHLFGCLKQV 1119 (1380)
Q Consensus 1040 ~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 1119 (1380)
..+++|+.|++++|..+..++.. .++|+.|+++++.+..+... ..+++|+.|
T Consensus 701 ---------i~l~sL~~L~Lsgc~~L~~~p~~---------------~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L 752 (1153)
T PLN03210 701 ---------INLKSLYRLNLSGCSRLKSFPDI---------------STNISWLDLDETAIEEFPSN----LRLENLDEL 752 (1153)
T ss_pred ---------CCCCCCCEEeCCCCCCccccccc---------------cCCcCeeecCCCcccccccc----ccccccccc
Confidence 02455555555555555444321 23455555555544322111 123445555
Q ss_pred EeeCCCCc-------ccchHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccccCCCCch
Q 000635 1120 AVATDESE-------CFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNSKL 1192 (1380)
Q Consensus 1120 ~l~~~~~~-------~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~ 1192 (1380)
.++.+... .++......+++|+.|++++|+....+| ..+.++++|+.|+|++|++++.++...
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-------~si~~L~~L~~L~Ls~C~~L~~LP~~~--- 822 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-------SSIQNLHKLEHLEIENCINLETLPTGI--- 822 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccC-------hhhhCCCCCCEEECCCCCCcCeeCCCC---
Confidence 54332111 1111112223455555555555333322 234445555555555555555553211
Q ss_pred hhhhhcceeEeeecccccccccCCccccccccCEEEeccCcCcccccchHHHhhcccccEEEEecccCcceeeccCCCCC
Q 000635 1193 EHILQYLEKLFVSYCQSLLILLPSASISFRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCRAMTEVVTGDENGA 1272 (1380)
Q Consensus 1193 ~~~l~~L~~L~i~~C~~l~~~~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 1272 (1380)
.+++|+.|++++|+.+..+ |. ..++|+.|++++ ++++.+|. .+..+++|+.|++++|+++..++.
T Consensus 823 --~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~------ 887 (1153)
T PLN03210 823 --NLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSL------ 887 (1153)
T ss_pred --CccccCEEECCCCCccccc-cc---cccccCEeECCC-CCCccChH--HHhcCCCCCEEECCCCCCcCccCc------
Confidence 3455555555555555444 22 123555555555 44554432 344555555555555555555543
Q ss_pred CCCCccccccccceeeeccCCCcccc
Q 000635 1273 ANPKEEIVFTKLKSISLVDLDSLTSF 1298 (1380)
Q Consensus 1273 ~~~~~~~~l~~L~~L~l~~c~~L~~l 1298 (1380)
....+++|+.|++++|++|+.+
T Consensus 888 ----~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 888 ----NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ----ccccccCCCeeecCCCcccccc
Confidence 2334455555555555555544
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2e-23 Score=230.14 Aligned_cols=175 Identities=18% Similarity=0.286 Sum_probs=144.6
Q ss_pred ccceeEEEeccCCcc--cCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCC
Q 000635 505 KKECYAISVRDSSIH--ELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNL 581 (1380)
Q Consensus 505 ~~~~r~lsl~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 581 (1380)
++-+|.+++++|++. .+|... .+++++.|.+...... .+|+.+ +.+.+|..|.+++|++.++-..++.|+.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~----~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE----QVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh----hChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 445778888888874 566655 6888888888754443 377775 88999999999999998888888889999
Q ss_pred CEEEecCCCCCC---cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccc
Q 000635 582 QTLCLERSTVGD---IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHN 658 (1380)
Q Consensus 582 ~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 658 (1380)
|.+++++|.++. |..|-+|..|.+||||+|++++.|..+.+-+++-+|+|++| ++..||...+.+|+.|-.|+|++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc
Confidence 999999998876 78899999999999999999999999999999999999987 48899988888999999999998
Q ss_pred cccceeeeccCccccccChhhhcCCCCCcEEEEEecCCC
Q 000635 659 CYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDD 697 (1380)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 697 (1380)
|.+. ..+..+..|.+|++|.+++|...
T Consensus 160 NrLe------------~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 160 NRLE------------MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred chhh------------hcCHHHHHHhhhhhhhcCCChhh
Confidence 8654 66778888888899888887654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-23 Score=243.96 Aligned_cols=130 Identities=22% Similarity=0.290 Sum_probs=77.5
Q ss_pred ccccceeccccccchh-hcccCCCccccccceEEEeeCCCCcccchHHHhhcccCceEEEeccceEEEeccCcccccccc
Q 000635 1087 FPNLEDLALSGEDVEM-ILMGDFPHHLFGCLKQVAVATDESECFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDV 1165 (1380)
Q Consensus 1087 ~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l 1165 (1380)
.+.|+.|++.+|.+.. .++. ...+.+|+.|+++.|.+.+||...+.++..|++|+++||.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~---l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk---------------- 418 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV---LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK---------------- 418 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh---hccccceeeeeecccccccCCHHHHhchHHhHHHhcccch----------------
Confidence 4456666666655432 1111 2345556666666666666665555555555555555544
Q ss_pred ccccccceEecccccccccccCCCCchhhhhhcceeEeeecccccccccCCccccccccCEEEeccCcCcccccchHHHh
Q 000635 1166 RNFALIKRLHLVELDDLKHLWKPNSKLEHILQYLEKLFVSYCQSLLILLPSASISFRNLTELQVTNCKKLINLVTSSVAK 1245 (1380)
Q Consensus 1166 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~ 1245 (1380)
|+.+ +.....+..|++|...+ +.+..+ | .+..++.|+.+|++ |++|+.+.......
T Consensus 419 ----------------L~~L----p~tva~~~~L~tL~ahs-N~l~~f-P-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 419 ----------------LTTL----PDTVANLGRLHTLRAHS-NQLLSF-P-ELAQLPQLKVLDLS-CNNLSEVTLPEALP 474 (1081)
T ss_pred ----------------hhhh----hHHHHhhhhhHHHhhcC-Cceeec-h-hhhhcCcceEEecc-cchhhhhhhhhhCC
Confidence 3443 22334567777777765 666666 7 58888889999987 68888764321111
Q ss_pred hcccccEEEEecccC
Q 000635 1246 SLVGLLMLNIYGCRA 1260 (1380)
Q Consensus 1246 ~l~~L~~L~i~~c~~ 1260 (1380)
. +.|++||++++..
T Consensus 475 ~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 S-PNLKYLDLSGNTR 488 (1081)
T ss_pred C-cccceeeccCCcc
Confidence 1 6888888888764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.1e-23 Score=228.64 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=228.2
Q ss_pred cCCccCCCCCc-ccccceeEEEeccCCcccCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc
Q 000635 492 RNEDVWDWPDE-DEKKECYAISVRDSSIHELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA 569 (1380)
Q Consensus 492 ~~~~~~~~~~~-~~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~ 569 (1380)
+..++...|.. ...+++.||++..|++..+.... .++.||++.+..|...... ||.++| +++.|.+||||+|.++
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG--iP~diF-~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG--IPTDIF-RLKDLTILDLSHNQLR 116 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC--CCchhc-ccccceeeecchhhhh
Confidence 33334444432 24678999999999987776544 8999999999987765544 999986 6999999999999999
Q ss_pred cccccccCCCCCCEEEecCCCCCC-cc-cccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcC
Q 000635 570 SLPYSIGLLQNLQTLCLERSTVGD-IA-IIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSS 647 (1380)
Q Consensus 570 ~lp~~i~~L~~L~~L~L~~~~l~~-~~-~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~ 647 (1380)
+.|..+.+-+++-+|+||+|.|.. |. -+-+|+.|-+||||+|.+..+|+.+..|.+||+|+|++|. +..+.-..+..
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPs 195 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPS 195 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCcc
Confidence 999999999999999999999988 64 4779999999999999999999999999999999999986 54444444667
Q ss_pred CCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcc-cccccceeeeeecCCCCCCcccc
Q 000635 648 LTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGF-FTKKLARFKISVGDESFSTPFYF 726 (1380)
Q Consensus 648 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 726 (1380)
+++|+.|++++...+ ....+..+..+.||+.++++.|+...+|.-+ .+.+|+.|+++.+.+.....
T Consensus 196 mtsL~vLhms~TqRT----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--- 262 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRT----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--- 262 (1255)
T ss_pred chhhhhhhcccccch----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec---
Confidence 889999999887543 4567788899999999999999999998876 67777777776555411100
Q ss_pred cccccCCCCccccccccceeEEEeecCCCCCCcccccCcceeeEEeeccCCChhhhhhcccccCCCCccEEEeecCCCCc
Q 000635 727 VESWFSSRPNFMIGKHESLRTLKLKLSSKPIGSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQLKHLHIQNNPDLL 806 (1380)
Q Consensus 727 ~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 806 (1380)
. .+.. .+|+.|+++.+.....+... -.+++|+.|.+.++. +.
T Consensus 263 ----------~-~~~W-----------------------~~lEtLNlSrNQLt~LP~av---cKL~kL~kLy~n~Nk-L~ 304 (1255)
T KOG0444|consen 263 ----------T-EGEW-----------------------ENLETLNLSRNQLTVLPDAV---CKLTKLTKLYANNNK-LT 304 (1255)
T ss_pred ----------c-HHHH-----------------------hhhhhhccccchhccchHHH---hhhHHHHHHHhccCc-cc
Confidence 0 0112 34444555544432222111 245555555554431 11
Q ss_pred ccccCCCCccCCcccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcc
Q 000635 807 CIVDSRDRETYDAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKK 886 (1380)
Q Consensus 807 ~i~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 886 (1380)
. .......+.+.+|+.+...+ ++++-++. ....++.|+.|.+..+. +..+|. .++-++.|+.|+++++++
T Consensus 305 F---eGiPSGIGKL~~Levf~aan-N~LElVPE---glcRC~kL~kL~L~~Nr-LiTLPe--aIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 305 F---EGIPSGIGKLIQLEVFHAAN-NKLELVPE---GLCRCVKLQKLKLDHNR-LITLPE--AIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred c---cCCccchhhhhhhHHHHhhc-cccccCch---hhhhhHHHHHhcccccc-eeechh--hhhhcCCcceeeccCCcC
Confidence 0 01111334455555555443 33444443 23445666666665333 444432 455667777777777666
Q ss_pred hhhH
Q 000635 887 MEEV 890 (1380)
Q Consensus 887 l~~l 890 (1380)
+..-
T Consensus 375 LVMP 378 (1255)
T KOG0444|consen 375 LVMP 378 (1255)
T ss_pred ccCC
Confidence 6543
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=2.7e-24 Score=226.09 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=70.7
Q ss_pred ecccccccccccccccccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccc
Q 000635 960 VLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRA 1039 (1380)
Q Consensus 960 ~l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 1039 (1380)
.+++|..|++++|-+.++ |..+..+..|+.|+|+.. ....+ +..+..+..|+.+-.+++ .+..+.+.
T Consensus 433 ~l~kLt~L~L~NN~Ln~L------P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas~n-qi~~vd~~--- 499 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDL------PEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLASNN-QIGSVDPS--- 499 (565)
T ss_pred hhhcceeeecccchhhhc------chhhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhccc-cccccChH---
Confidence 367888888888866644 666677778888888875 44444 333444555555555543 33333221
Q ss_pred cccCCCCCeeecccccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccch
Q 000635 1040 EADQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVE 1101 (1380)
Q Consensus 1040 ~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~ 1101 (1380)
....+.+|+.|++.+ +.+..+|+.... +.+|++|+++||++.
T Consensus 500 -------~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn------------mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 -------GLKNMRNLTTLDLQN-NDLQQIPPILGN------------MTNLRHLELDGNPFR 541 (565)
T ss_pred -------HhhhhhhcceeccCC-CchhhCChhhcc------------ccceeEEEecCCccC
Confidence 122466788888877 677777775442 788999999999886
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.4e-17 Score=155.10 Aligned_cols=168 Identities=26% Similarity=0.372 Sum_probs=131.4
Q ss_pred CcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCC-cc
Q 000635 517 SIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD-IA 595 (1380)
Q Consensus 517 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~ 595 (1380)
++.+++..+.++++..|.+++|+... +|+.+ ..+++|++|++++|.|+++|.+|+.++.||.|++.-|++.. |.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~----vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lpr 96 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTV----VPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPR 96 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceee----cCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcc
Confidence 34566667777777888887766543 56665 77888888888888888888888888888888888888766 78
Q ss_pred cccCCccccEEEcccCCCc--cCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccCcccc
Q 000635 596 IIGKLKNLEVLSFLQSDIV--MLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKR 673 (1380)
Q Consensus 596 ~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 673 (1380)
.||.++-|++|||.+|++. .+|..|-.|+-|+.|.+++|. .+.+|+. +++|++||.|.+..|.+.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll----------- 163 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL----------- 163 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh-----------
Confidence 8888888888888888766 678888888888888888874 7777776 788888888888877544
Q ss_pred ccChhhhcCCCCCcEEEEEecCCCCCCCcc
Q 000635 674 SASLDEFLHLPRLTTLEIEVRNDDILPEGF 703 (1380)
Q Consensus 674 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 703 (1380)
..+.+++.++.|++|++.+|..+.+|..+
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 56778888888888888888888777654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=8.7e-17 Score=149.76 Aligned_cols=156 Identities=22% Similarity=0.377 Sum_probs=141.1
Q ss_pred CCcccccceeEEEeccCCcccCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCC
Q 000635 500 PDEDEKKECYAISVRDSSIHELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLL 578 (1380)
Q Consensus 500 ~~~~~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L 578 (1380)
+.--.+..++++.++.|.+..+|+.+ ++.+|++|.+++|+... +|.++ +.+.+||.|+++-|++..+|..|+.+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~----lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSI-SSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh----cChhh-hhchhhhheecchhhhhcCccccCCC
Confidence 33444678899999999999999877 89999999999877654 77776 89999999999999999999999999
Q ss_pred CCCCEEEecCCCCCC---cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEE
Q 000635 579 QNLQTLCLERSTVGD---IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALY 655 (1380)
Q Consensus 579 ~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~ 655 (1380)
+-|++|||.+|.+.+ |..|..|..|+-|.|++|.+..+|..+++|++||.|.+.+|. +-++|.. ++.|+.|++|+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHh
Confidence 999999999999877 788889999999999999999999999999999999999985 7788887 89999999999
Q ss_pred ccccccc
Q 000635 656 MHNCYVE 662 (1380)
Q Consensus 656 l~~~~~~ 662 (1380)
+.+|.+.
T Consensus 180 iqgnrl~ 186 (264)
T KOG0617|consen 180 IQGNRLT 186 (264)
T ss_pred cccceee
Confidence 9999765
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=3.2e-15 Score=158.41 Aligned_cols=153 Identities=21% Similarity=0.307 Sum_probs=97.4
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccccc-ccccCCCCCCEEEecCCCCCC--cccccCCcc
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLP-YSIGLLQNLQTLCLERSTVGD--IAIIGKLKN 602 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~ 602 (1380)
.|+...-..+. |....+. ++|.++ -..-..++|..|.|+++| .+|+.+++||.|||++|.|+. |+.|.+|.+
T Consensus 42 ~Cs~~~g~~Vd-Cr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~ 116 (498)
T KOG4237|consen 42 TCSDVEGGIVD-CRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS 116 (498)
T ss_pred ccCCCCCceEE-ccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence 44444433333 3333332 355544 334467788888888885 567788888888888888776 677888877
Q ss_pred ccEEEccc-CCCccCCh-hhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccCccccccChhhh
Q 000635 603 LEVLSFLQ-SDIVMLPK-EIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEF 680 (1380)
Q Consensus 603 L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 680 (1380)
|-.|-+.+ |+|+.+|. .|++|..||.|.+.-| .+.-++.+.+..|++|..|.+..|.+. ...-..+
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q-----------~i~~~tf 184 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQ-----------SICKGTF 184 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhh-----------hhccccc
Confidence 76666655 67777776 4677777777777765 366666667777777777777776544 1111245
Q ss_pred cCCCCCcEEEEEecC
Q 000635 681 LHLPRLTTLEIEVRN 695 (1380)
Q Consensus 681 ~~l~~L~~L~l~~~~ 695 (1380)
..+..++++++..|.
T Consensus 185 ~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNP 199 (498)
T ss_pred cchhccchHhhhcCc
Confidence 555555555555443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=7e-15 Score=155.86 Aligned_cols=275 Identities=19% Similarity=0.216 Sum_probs=170.7
Q ss_pred EEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccc-cccccCCCCCCEEEecC-
Q 000635 511 ISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLER- 588 (1380)
Q Consensus 511 lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~- 588 (1380)
++-++..+.++|... .+....++|..|.+.. ||+..|+.+++||.|||++|.|+.+ |+.|..|..|-.|-+.+
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 344445566777644 2355677888777665 8999999999999999999999988 99999999998888877
Q ss_pred CCCCC-c-ccccCCccccEEEcccCCCccCC-hhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceee
Q 000635 589 STVGD-I-AIIGKLKNLEVLSFLQSDIVMLP-KEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEV 665 (1380)
Q Consensus 589 ~~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 665 (1380)
|+|++ | ..|++|..|+-|.+.-|++.-++ ..+..|++|..|.+.+| .+..++.+.+..+..++++++..|.+...-
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccc
Confidence 78999 4 67999999999999999988665 47899999999999997 588999888999999999998877533100
Q ss_pred eccCc-cccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeeeeecCCCCCCcccccccccCCCCccccccccc
Q 000635 666 ETRGS-EKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKISVGDESFSTPFYFVESWFSSRPNFMIGKHES 744 (1380)
Q Consensus 666 ~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 744 (1380)
....- ......+.+++.....+-..+....+..++..-+...++.+.-..... -......|...|..+++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~---------d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE---------DFPDSICPAKCFKKLPN 275 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc---------cCcCCcChHHHHhhccc
Confidence 00000 000011112222222222222222222222221111122220000000 00112334444677777
Q ss_pred eeEEEeecCCC-CCCcccccCcceeeEEeeccCCChhhhhhcccccCCCCccEEEeecC
Q 000635 745 LRTLKLKLSSK-PIGSKELQGVNNVEYLCLDELPGVKTVLFELDTKGFSQLKHLHIQNN 802 (1380)
Q Consensus 745 L~~L~L~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 802 (1380)
|+.|+|+.|.. .+....+.+...+++|.|..+..-..-...| .++..|+.|+|.++
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f--~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF--QGLSGLKTLSLYDN 332 (498)
T ss_pred ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhh--hccccceeeeecCC
Confidence 77777777643 2334446666777777777665322222222 45667777777765
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=7.2e-12 Score=166.89 Aligned_cols=298 Identities=16% Similarity=0.200 Sum_probs=187.9
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEI 227 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 227 (1380)
.||....+++-|...++.+.+ ....+++.|+|++|.||||++.+++++. +.++|+++... .+...+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHH
Confidence 345555678889877766643 2456899999999999999999988532 25899999744 4556666666
Q ss_pred HHHhCCCccc--------------cchHHHHHHHHHHHHc-CCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEE
Q 000635 228 AEKLGLTLRE--------------ESESRRASSLYERLKK-EKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLT 290 (1380)
Q Consensus 228 ~~~l~~~~~~--------------~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvT 290 (1380)
+..++..... .........+...+.. +.+++|||||+...++ ....+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 6666321110 1112233445555544 6899999999976532 222233222333456789899
Q ss_pred ecchHH---HHhhCCCceeeCC----CCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcCCh
Q 000635 291 TRDRSV---LLSMGSKENFPIG----VLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSV 363 (1380)
Q Consensus 291 tR~~~v---~~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~ 363 (1380)
||...- ..........+++ +|+.+|+.++|....+..... +.+.+|.+.++|.|+++..++..++....
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~----~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEA----AESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCH----HHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 998421 1111122345566 999999999998877654332 34789999999999999999887754421
Q ss_pred hHHHHHHHHhcCCCccccCCCchhhhhhH-HHhhccCCchhHHHHHHhccCCCCCCChHHHHHHHHhhcccccccchHHH
Q 000635 364 PEWENALQELRRPSMESFQGVPKEAYSTI-ELSYKYLEGEKLKKMFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLEDA 442 (1380)
Q Consensus 364 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l-~~s~~~L~~~~lk~~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~~ 442 (1380)
. .......+.. . .+..+...+ ...++.||++ .++.+...|+++ .+. .++...-. |.
T Consensus 235 ~-~~~~~~~~~~-----~--~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~-~~l~~~l~--~~---------- 291 (903)
T PRK04841 235 S-LHDSARRLAG-----I--NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMN-DALIVRVT--GE---------- 291 (903)
T ss_pred c-hhhhhHhhcC-----C--CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCC-HHHHHHHc--CC----------
Confidence 0 0111111110 0 011244443 3347899998 799999999987 554 33443221 10
Q ss_pred HHHHHHHHHHHhhccceee-eC-CCCcEEecHHHHHHHHHHhh
Q 000635 443 RTKMHAWVHELVDSCLLLV-DD-SGDNFSMHDVVRDVAISIAC 483 (1380)
Q Consensus 443 ~~~~~~~l~~L~~~~ll~~-~~-~~~~~~mHdlv~~~~~~~~~ 483 (1380)
....+.+++|.+.+++.. .+ ...+|+.|++++++++....
T Consensus 292 -~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 292 -ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 111357889999999653 33 34579999999999998753
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=4.8e-12 Score=154.91 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=88.7
Q ss_pred EEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCC
Q 000635 510 AISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERS 589 (1380)
Q Consensus 510 ~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 589 (1380)
.|+++.+.+..+|..+. ++|+.|.+.+|.... +|. .+++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~----LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC----CCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45566666666665442 466777766554433 332 245677777777777766643 346667777777
Q ss_pred CCCCcccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccC
Q 000635 590 TVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRG 669 (1380)
Q Consensus 590 ~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 669 (1380)
.++.++. ...+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++|.+.
T Consensus 273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~------- 335 (788)
T PRK15387 273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLT------- 335 (788)
T ss_pred chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccc-------
Confidence 6665221 124566677777777766652 356777777776 35555542 234556666666543
Q ss_pred ccccccChhhhcCCCCCcEEEEEecCCCCCCC
Q 000635 670 SEKRSASLDEFLHLPRLTTLEIEVRNDDILPE 701 (1380)
Q Consensus 670 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 701 (1380)
..+ .+ ..+|+.|++++|.+..+|.
T Consensus 336 -----~LP-~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 336 -----SLP-TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -----ccc-cc--ccccceEecCCCccCCCCC
Confidence 011 01 1356777777776666654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=9.7e-12 Score=152.28 Aligned_cols=186 Identities=18% Similarity=0.124 Sum_probs=134.8
Q ss_pred ecCCccCCCCCcccccceeEEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccc
Q 000635 491 VRNEDVWDWPDEDEKKECYAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLAS 570 (1380)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~ 570 (1380)
+.+..+..+|. ....+++.|++..|.+..+|.. .++|++|++++|.... +|. ...+|+.|++++|.++.
T Consensus 208 Ls~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts----LP~----lp~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 208 VGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS----LPV----LPPGLLELSIFSNPLTH 276 (788)
T ss_pred cCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc----ccC----cccccceeeccCCchhh
Confidence 34444444554 3345789999999999998864 6899999999876654 553 24688999999999998
Q ss_pred ccccccCCCCCCEEEecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCC
Q 000635 571 LPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLT 649 (1380)
Q Consensus 571 lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~ 649 (1380)
+|..+ .+|+.|++++|.++. |. .+++|++|++++|+++.+|... .+|+.|++++|. +..+|.. ..
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l----p~ 342 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL----PS 342 (788)
T ss_pred hhhch---hhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc----cc
Confidence 88643 568899999999887 43 2468999999999999888643 357788888874 7777742 25
Q ss_pred CCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeeeeecCC
Q 000635 650 RLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKISVGDE 718 (1380)
Q Consensus 650 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 718 (1380)
+|+.|++++|.+. ..+. + ..+|+.|+++.|.+..+|.. ..+|+.|++..+..
T Consensus 343 ~Lq~LdLS~N~Ls------------~LP~-l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~L 394 (788)
T PRK15387 343 GLQELSVSDNQLA------------SLPT-L--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL 394 (788)
T ss_pred ccceEecCCCccC------------CCCC-C--CcccceehhhccccccCccc--ccccceEEecCCcc
Confidence 8999999998765 1111 1 24678888888888877754 24566666655443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=3.5e-12 Score=157.51 Aligned_cols=134 Identities=16% Similarity=0.333 Sum_probs=57.8
Q ss_pred eEEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecC
Q 000635 509 YAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLER 588 (1380)
Q Consensus 509 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 588 (1380)
..+.+.++.+..+|..+ .++++.|++++|.... +|..++ .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCc----CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 33444444444444322 2344555554443322 333332 244555555555554444332 2455555555
Q ss_pred CCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccc
Q 000635 589 STVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCY 660 (1380)
Q Consensus 589 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~ 660 (1380)
|.+.. |..+. .+|++|++++|++..+|..+. .+|++|++++| +++.+|.. +. .+|+.|++++|.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNS 315 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCc
Confidence 55444 33332 245555555554444444332 24555555544 24444432 11 234444444443
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.31 E-value=8.4e-11 Score=138.61 Aligned_cols=299 Identities=21% Similarity=0.210 Sum_probs=195.1
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEI 227 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 227 (1380)
.+|......+-|.+..+.+.+ ..+.|.+.|..|+|.||||++.+.+.... .=..|.|.+.++.. +...+...+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHH
Confidence 444456677888776655544 34678999999999999999999988433 23569999998655 577777788
Q ss_pred HHHhCCCccccch--------------HHHHHHHHHHHHc-CCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEE
Q 000635 228 AEKLGLTLREESE--------------SRRASSLYERLKK-EKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLT 290 (1380)
Q Consensus 228 ~~~l~~~~~~~~~--------------~~~~~~l~~~l~~-~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvT 290 (1380)
+..++...+...+ ...+..++..+.. .++..+||||..-. ..+..-++..+.....+-..|||
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 7777643332211 1223444444433 57899999997533 22222133333445678899999
Q ss_pred ecchHHHH---hhCCCceeeCC----CCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcC-C
Q 000635 291 TRDRSVLL---SMGSKENFPIG----VLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKK-S 362 (1380)
Q Consensus 291 tR~~~v~~---~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-~ 362 (1380)
||...-.. ..-.+...+++ .++.+|+.++|....+..-+.. .++.+.+..+|-+-|+..++=.+++. +
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 99863222 11112233443 3899999999998886544433 37899999999999999999888843 3
Q ss_pred hhHHHHHHHHhcCCCccccCCCchhhhh-hHHHhhccCCchhHHHHHHhccCCCCCCChHHHHHHHHhhcccccccchHH
Q 000635 363 VPEWENALQELRRPSMESFQGVPKEAYS-TIELSYKYLEGEKLKKMFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLED 441 (1380)
Q Consensus 363 ~~~w~~~l~~l~~~~~~~~~~~~~~~~~-~l~~s~~~L~~~~lk~~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~ 441 (1380)
.+.-... ..+..+.+.. ...--++.||++ ++..++.||+++.= -.+|+....+
T Consensus 243 ~~q~~~~-----------LsG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f--~~eL~~~Ltg------------ 296 (894)
T COG2909 243 AEQSLRG-----------LSGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF--NDELCNALTG------------ 296 (894)
T ss_pred HHHHhhh-----------ccchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh--hHHHHHHHhc------------
Confidence 2221111 1111011111 345567899998 89999999998731 1244443322
Q ss_pred HHHHHHHHHHHHhhccceee--eCCCCcEEecHHHHHHHHHHhhc
Q 000635 442 ARTKMHAWVHELVDSCLLLV--DDSGDNFSMHDVVRDVAISIACR 484 (1380)
Q Consensus 442 ~~~~~~~~l~~L~~~~ll~~--~~~~~~~~mHdlv~~~~~~~~~~ 484 (1380)
++.+.+.+++|.+++|+-. ++++.+|+.|.++.+|.+.....
T Consensus 297 -~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 -EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 1233458999999999763 45677899999999999987654
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=8e-12 Score=154.38 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=148.3
Q ss_pred EecCCccCCCCCcccccceeEEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc
Q 000635 490 LVRNEDVWDWPDEDEKKECYAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA 569 (1380)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~ 569 (1380)
.+.+..+..+|. .+...++.|++++|.+..+|... +++|+.|++++|.... +|..+ ..+|+.|+|++|.+.
T Consensus 184 ~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lts----LP~~l---~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 184 RLKILGLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTS----IPATL---PDTIQEMELSINRIT 254 (754)
T ss_pred EeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcccc----CChhh---hccccEEECcCCccC
Confidence 334444444553 24568999999999999998755 4699999999876553 67655 347999999999999
Q ss_pred cccccccCCCCCCEEEecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCC
Q 000635 570 SLPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSL 648 (1380)
Q Consensus 570 ~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L 648 (1380)
.+|..+. .+|++|++++|.++. |..+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. + .
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~ 324 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--P 324 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--c
Confidence 9998775 589999999999988 66554 589999999999999987654 479999999984 7778764 2 3
Q ss_pred CCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcccccccceeeeeecCC
Q 000635 649 TRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGFFTKKLARFKISVGDE 718 (1380)
Q Consensus 649 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 718 (1380)
++|+.|++++|.+. ..+..+. ++|+.|++++|.+..+|..+ .++|+.|++..+..
T Consensus 325 ~sL~~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~L 379 (754)
T PRK15370 325 PGLKTLEAGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNAL 379 (754)
T ss_pred ccceeccccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcC
Confidence 68999999998765 1223332 68999999999988877654 35667776665443
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.4e-09 Score=129.32 Aligned_cols=288 Identities=17% Similarity=0.152 Sum_probs=170.1
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 153 GYEAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
.+..|+||+++++++...+. ....+.+.|+|++|+|||++++.+++........-.++++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 34569999999999998874 33445788999999999999999999987544334567788887778889999999
Q ss_pred HHhCCC-c--cccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc------chhhhhcCCCCC-CCCCeEEEEEecchHHH
Q 000635 229 EKLGLT-L--REESESRRASSLYERLKK-EKKILVVLDNLWKSL------DLETTIGIPYGD-DHKGCKVLLTTRDRSVL 297 (1380)
Q Consensus 229 ~~l~~~-~--~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~~~~~~~~~-~~~~~~ilvTtR~~~v~ 297 (1380)
.+++.. . .+....+....+.+.+.+ +++.+||+|+++... .+..++. .+.. ...+..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~-~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLR-AHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHH-hhhccCCCeEEEEEEECCcchh
Confidence 998652 1 122334445566666653 467899999998643 2233222 1111 11133366666654433
Q ss_pred HhhC-------CCceeeCCCCCHHHHHHHHHhhcCC-----CccChhhHHHHHHHHHHhCCChHHHHHHHHHh--h---c
Q 000635 298 LSMG-------SKENFPIGVLNEQEAWRLFKLTADD-----DVENRRLKSIATQVAKACGGLPIALTTIAKAL--R---K 360 (1380)
Q Consensus 298 ~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l--~---~ 360 (1380)
.... ....+.+++++.++..+++..++.. ...++.++.+++......|..+.|+.++-.+. . +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 3211 1346899999999999999987721 12222222333333233455677766654332 1 1
Q ss_pred C---ChhHHHHHHHHhcCCCccccCCCchhhhhhHHHhhccCCchhHHHHHHhccC-CC---CCCChHHHHHH--HHh--
Q 000635 361 K---SVPEWENALQELRRPSMESFQGVPKEAYSTIELSYKYLEGEKLKKMFLLCSL-MP---NPCYTLDLLKY--CMG-- 429 (1380)
Q Consensus 361 ~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk~~~~~~a~-fp---~~~~~~~li~~--w~~-- 429 (1380)
. +.+++..+.+... .....-.+..||.++ |..+..++- .. ..+...++... .++
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~-k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLHE-KLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHHH-HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 4455666665531 113445678999873 333333332 22 23344444322 111
Q ss_pred hcccccccchHHHHHHHHHHHHHHhhccceeee
Q 000635 430 LGMFQRVHKLEDARTKMHAWVHELVDSCLLLVD 462 (1380)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 462 (1380)
.|.-. -....+.++++.|...|++...
T Consensus 332 ~~~~~------~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEP------RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCc------CcHHHHHHHHHHHHhcCCeEEE
Confidence 12210 0224456799999999999753
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=4.4e-13 Score=143.92 Aligned_cols=247 Identities=16% Similarity=0.083 Sum_probs=125.2
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccccc
Q 000635 962 PNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRAEA 1041 (1380)
Q Consensus 962 ~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 1041 (1380)
..|+.|.+++|.-...- .+-....+++++++|.+.+|.+++...-......++.|+.|++..|..++...-+..++
T Consensus 138 g~lk~LSlrG~r~v~~s---slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~- 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS---SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE- 213 (483)
T ss_pred cccccccccccccCCcc---hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH-
Confidence 46888999888322111 11122356799999999999988876445566788999999999999888765443232
Q ss_pred cCCCCCeeecccccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhcccCCCccccccceEEEe
Q 000635 1042 DQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMILMGDFPHHLFGCLKQVAV 1121 (1380)
Q Consensus 1042 ~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 1121 (1380)
.+|+|++|+++.|+.++.-... .+.-.+..++.+...||.-...-.-.....+..-+.++++
T Consensus 214 --------gC~kL~~lNlSwc~qi~~~gv~----------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 214 --------GCRKLKYLNLSWCPQISGNGVQ----------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred --------hhhhHHHhhhccCchhhcCcch----------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 3899999999999888762111 1111245556665555542211100000111122233333
Q ss_pred -eCCCCcc-cchHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccccCCCCchhhhhhcc
Q 000635 1122 -ATDESEC-FPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNSKLEHILQYL 1199 (1380)
Q Consensus 1122 -~~~~~~~-~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L 1199 (1380)
..+.++. --..+...+..|+.|+.++|...+.++...+ .+..++|+.|.+..|..+........ -.+++.|
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-----g~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~L 348 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL-----GQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHL 348 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-----hcCCCceEEEeccccchhhhhhhhhh--hcCChhh
Confidence 1111111 1112223455566666666654433332211 23345555555555555444321111 1234455
Q ss_pred eeEeeecccccccc-cCCccccccccCEEEeccCcCccc
Q 000635 1200 EKLFVSYCQSLLIL-LPSASISFRNLTELQVTNCKKLIN 1237 (1380)
Q Consensus 1200 ~~L~i~~C~~l~~~-~p~~~~~~~~L~~L~i~~C~~L~~ 1237 (1380)
+.|++.+|..+... +-.-..+++.|+.|.++.|..+++
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 55555554444322 111122344455555555544444
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.12 E-value=2.2e-12 Score=138.66 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=96.8
Q ss_pred CCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcchhhHhhcCCccccCCccccccccccccceeecCCCcCcc
Q 000635 846 SFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKMEEVFAIGGEADVGNKNAIEKIEFAQLKSLSLGMLPKVT 925 (1380)
Q Consensus 846 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~ 925 (1380)
..|+++.|.+.+|.++++..-......+++|+.|.+..|..++...-.. ....+|+|+.|.++.||.++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-----------la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-----------LAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----------HHHhhhhHHHhhhccCchhh
Confidence 4567777777777777665444455667788888888887777654321 11257888888888888776
Q ss_pred ccccccCCCCCCCCCccccccccccccccccceeecccccccccccccccccccCCCCCCCCCCCCCccEEEeccccccc
Q 000635 926 NFFREVKTPPASPNRRESEEDELDTSIQLLNEKVVLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLK 1005 (1380)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~ 1005 (1380)
+-.... .......++.+..++|.-...- .+...-..+.-+.++++..|..++
T Consensus 231 ~~gv~~-------------------------~~rG~~~l~~~~~kGC~e~~le---~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 231 GNGVQA-------------------------LQRGCKELEKLSLKGCLELELE---ALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred cCcchH-------------------------HhccchhhhhhhhcccccccHH---HHHHHhccChHhhccchhhhcccc
Confidence 510000 0011233455555544111000 000111223455666666777776
Q ss_pred cccchhhHhhhccccEEEEecccccccccccccccccCCCCCeeecccccceeccccccccccc
Q 000635 1006 YIFSATMIRSFEQLQRLEISNCMVLQEIISKDRAEADQRTTPCFVFPRLTTLILLGLPELKCFY 1069 (1380)
Q Consensus 1006 ~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~ 1069 (1380)
..........+..||.|..++|..+.+.+....+. ..++|+.|.+..|.+++...
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~---------~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ---------HCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc---------CCCceEEEeccccchhhhhh
Confidence 55333344556777777777777665543322222 25677777777776665543
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=2.7e-08 Score=117.01 Aligned_cols=289 Identities=17% Similarity=0.175 Sum_probs=168.9
Q ss_pred ccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcC-Cc---cEEEEEEcCCCcCHHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDN-IF---DAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~~ 226 (1380)
..|+||++++++|..++. ....+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999885 23446799999999999999999999875321 11 24678888877788889999
Q ss_pred HHHHh---CCCcc--ccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc-c----hhhhhcCCCCCC--CCCeEEEEEecc
Q 000635 227 IAEKL---GLTLR--EESESRRASSLYERLKK-EKKILVVLDNLWKSL-D----LETTIGIPYGDD--HKGCKVLLTTRD 293 (1380)
Q Consensus 227 i~~~l---~~~~~--~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~----~~~~~~~~~~~~--~~~~~ilvTtR~ 293 (1380)
|+.++ +...+ +....+....+.+.+.. +++++||||+++... . +..++...-... .....+|.+|+.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99988 43322 12233444556666643 568899999998762 1 222121100111 133455666654
Q ss_pred hHHHHhhC-------CCceeeCCCCCHHHHHHHHHhhcC----CCccChhhHHHHHHHHHHhCCChHHHHHHH-HHh---
Q 000635 294 RSVLLSMG-------SKENFPIGVLNEQEAWRLFKLTAD----DDVENRRLKSIATQVAKACGGLPIALTTIA-KAL--- 358 (1380)
Q Consensus 294 ~~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Plai~~~~-~~l--- 358 (1380)
......+. ....+.+++++.+|..+++..++. ....+++..+.+.+++....|.|..+..+. ...
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 43322111 124689999999999999998873 112233333445567777788885443222 111
Q ss_pred -hc---C-ChhHHHHHHHHhcCCCccccCCCchhhhhhHHHhhccCCchhHHHHHHhccCC----CCCCChHHHHHHHH-
Q 000635 359 -RK---K-SVPEWENALQELRRPSMESFQGVPKEAYSTIELSYKYLEGEKLKKMFLLCSLM----PNPCYTLDLLKYCM- 428 (1380)
Q Consensus 359 -~~---~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk~~~~~~a~f----p~~~~~~~li~~w~- 428 (1380)
.. . +.+....+.+.+. .....-.+..||.++ +..+..++.. ...+...++...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~~-~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTHS-KLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1 3444554444431 123344667888863 4444443321 12344445554221
Q ss_pred -hhcccccccchHHHHHHHHHHHHHHhhccceeee
Q 000635 429 -GLGMFQRVHKLEDARTKMHAWVHELVDSCLLLVD 462 (1380)
Q Consensus 429 -~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 462 (1380)
.+.+-... -....+.++++.|...|++...
T Consensus 320 ~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDP----LTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCC----CcHHHHHHHHHHHHhcCCeEEE
Confidence 12111011 1235566789999999999854
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=9.5e-09 Score=115.16 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=116.2
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHH----
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYE---- 249 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~---- 249 (1380)
.+.+.+.|+|++|+||||+++.+++...... + .+.|+. ....+..+++..|+..+|..............+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3446899999999999999999998876321 1 223333 33456778899999999876544333333333332
Q ss_pred HHHcCCeEEEEEeCCCCcc--chhhhhc---CCCCCCCCCeEEEEEecchHHHHhhC----------CCceeeCCCCCHH
Q 000635 250 RLKKEKKILVVLDNLWKSL--DLETTIG---IPYGDDHKGCKVLLTTRDRSVLLSMG----------SKENFPIGVLNEQ 314 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~~~~--~~~~~~~---~~~~~~~~~~~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~ 314 (1380)
....+++.++|+||++... .++. +. ..-........|++|.... ....+. ....+.+++++.+
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~-l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEE-LRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHH-HHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 3335788999999998763 3333 22 1111222334555665432 222111 1346789999999
Q ss_pred HHHHHHHhhc---CCCccChhhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000635 315 EAWRLFKLTA---DDDVENRRLKSIATQVAKACGGLPIALTTIAKAL 358 (1380)
Q Consensus 315 ~~~~l~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 358 (1380)
|..+++...+ +......-..+.++.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998776 2211122234779999999999999999988876
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=4.8e-11 Score=149.90 Aligned_cols=177 Identities=22% Similarity=0.280 Sum_probs=115.8
Q ss_pred cceeEEEeccCC--cccCCC--CCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCC
Q 000635 506 KECYAISVRDSS--IHELPE--GLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNL 581 (1380)
Q Consensus 506 ~~~r~lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 581 (1380)
.+++.+-+..|. +..++. +..++.||+|++++|... +++|..+ +++-+||||+++++.++.+|.++++|+.|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l---~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL---SKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc---CcCChHH-hhhhhhhcccccCCCccccchHHHHHHhh
Confidence 368888888886 666666 447999999999975432 2588887 99999999999999999999999999999
Q ss_pred CEEEecCCC-CCC-cccccCCccccEEEcccCCCccCC---hhhhccccccEEeccCccccccccchhhcCCCCCcEEEc
Q 000635 582 QTLCLERST-VGD-IAIIGKLKNLEVLSFLQSDIVMLP---KEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYM 656 (1380)
Q Consensus 582 ~~L~L~~~~-l~~-~~~i~~L~~L~~L~L~~~~l~~lp---~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 656 (1380)
.||++.++. +.. +..+..|.+||+|.+.......-. ..+.+|.+|+.+...... . .+-.. +..++.|..+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQ 697 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhH
Confidence 999999987 444 455666999999999876522112 223444444444443322 1 11111 333444432221
Q ss_pred cccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCC
Q 000635 657 HNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDD 697 (1380)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 697 (1380)
.-.. . .......+..+..+.+|+.|.+..+++.
T Consensus 698 ~l~~-~-------~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 698 SLSI-E-------GCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhh-c-------ccccceeecccccccCcceEEEEcCCCc
Confidence 1110 0 0112344556677777777777766654
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=4.9e-10 Score=123.17 Aligned_cols=195 Identities=23% Similarity=0.303 Sum_probs=107.0
Q ss_pred ccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH---------HH
Q 000635 157 FESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG---------EI 227 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i 227 (1380)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+..... .+ .++|+............. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 79999999999999887667899999999999999999999988532 12 344544433332221111 11
Q ss_pred HHHhC----C-Cc------cccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc-ch---hhh---hcCCCC--CCCCCeE
Q 000635 228 AEKLG----L-TL------REESESRRASSLYERLKK-EKKILVVLDNLWKSL-DL---ETT---IGIPYG--DDHKGCK 286 (1380)
Q Consensus 228 ~~~l~----~-~~------~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~~---~~~---~~~~~~--~~~~~~~ 286 (1380)
.+.++ . .. ...........+.+.+.+ +++.+||+||+.... .. ..+ +...+. .......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 11121 1 00 112223455666677664 356999999987665 11 111 111111 1233444
Q ss_pred EEEEecchHHHHh--------hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 287 VLLTTRDRSVLLS--------MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 287 ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
+|+++........ ......+.+++++.+++++++...+.....-+...+..++|...+||+|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 5555554444432 122345999999999999999997633211112235579999999999988764
No 32
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.5e-09 Score=110.26 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=94.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCC----ccEEEEEEcCCCcCHH---HHHHHHHHHhCCCccccchHHHHHHHHH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNI----FDAVAFSEVSQTPDIK---NIQGEIAEKLGLTLREESESRRASSLYE 249 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 249 (1380)
|++.|+|.+|+||||+++.++........ +..++|+..+...... .+...|..+........ ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 58999999999999999999999876543 3467777776544332 34444444433221110 112233
Q ss_pred HHHcCCeEEEEEeCCCCccc---------hhhhhcCCCCC-CCCCeEEEEEecchHH---HHhhCCCceeeCCCCCHHHH
Q 000635 250 RLKKEKKILVVLDNLWKSLD---------LETTIGIPYGD-DHKGCKVLLTTRDRSV---LLSMGSKENFPIGVLNEQEA 316 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~~~~~---------~~~~~~~~~~~-~~~~~~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 316 (1380)
.+...++++||+|++++... +..++...+.. ..++.+++||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 34457999999999987633 12222222222 3468899999998766 23444456899999999999
Q ss_pred HHHHHhhc
Q 000635 317 WRLFKLTA 324 (1380)
Q Consensus 317 ~~l~~~~~ 324 (1380)
.++++++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998876
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=3.6e-11 Score=134.07 Aligned_cols=176 Identities=23% Similarity=0.300 Sum_probs=152.1
Q ss_pred ceeEEEeccCCcccCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEE
Q 000635 507 ECYAISVRDSSIHELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLC 585 (1380)
Q Consensus 507 ~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 585 (1380)
.....+++.|++.++|... .|-.|..+.+..|.+.. +|..+ .++..|.+|||+.|.++.+|..++.|+ |++|.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~----ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT----IPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcccee----cchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 3456678889999998766 67788888888777765 66665 889999999999999999999999876 99999
Q ss_pred ecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEcccccccee
Q 000635 586 LERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWE 664 (1380)
Q Consensus 586 L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 664 (1380)
+++|+++. |+.|+.+.+|..||.+.|++..+|..++.|.+|+.|++..|. +..+|.. ++.| .|..|+++.|++.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis-- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS-- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee--
Confidence 99999988 899999999999999999999999999999999999999975 7888887 6655 4889999988765
Q ss_pred eeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcc
Q 000635 665 VETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGF 703 (1380)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 703 (1380)
.++-.+.+|++|++|.|.+|....-|..+
T Consensus 225 ----------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ----------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ----------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 56788999999999999999988877776
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=7e-10 Score=111.04 Aligned_cols=130 Identities=24% Similarity=0.347 Sum_probs=46.7
Q ss_pred hCCCCccEEEecCccccccccccc-CCCCCCEEEecCCCCCCcccccCCccccEEEcccCCCccCChhh-hccccccEEe
Q 000635 553 TGMRKLRVVHFSGMRLASLPYSIG-LLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEI-GQLTKLRLLD 630 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 630 (1380)
.+..++|.|+|++|.|+.+. .++ .+.+|+.|++++|.|+.++.+..|++|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556788888888877663 455 57778888888888877777777888888888888888776655 3578888888
Q ss_pred ccCccccccccc-hhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEE
Q 000635 631 LTDCFKLKVIAT-NVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIE 692 (1380)
Q Consensus 631 L~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 692 (1380)
+++|. +..+.. ..+..+++|+.|++.+|.+. ....-...-+..+|+|+.|+-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCE
Confidence 87764 544322 23667777888888777665 1112223345666777776544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.1e-10 Score=119.44 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=136.4
Q ss_pred cceeEEEeccCCcccCCCCCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEE
Q 000635 506 KECYAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLC 585 (1380)
Q Consensus 506 ~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~ 585 (1380)
+.+..+++++..+...|.......+.-+ ++.......|.+...+ ...+.|..||||+|.|+.+.+++.-++.+|.|+
T Consensus 237 ptl~t~~v~~s~~~~~~~l~pe~~~~D~--~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~ 313 (490)
T KOG1259|consen 237 PTLQTICVHNTTIQDVPSLLPETILADP--SGSEPSTSNGSALVSA-DTWQELTELDLSGNLITQIDESVKLAPKLRRLI 313 (490)
T ss_pred chhheeeeecccccccccccchhhhcCc--cCCCCCccCCceEEec-chHhhhhhccccccchhhhhhhhhhccceeEEe
Confidence 4566677776666555544333332222 2111111222121111 345679999999999999999999999999999
Q ss_pred ecCCCCCCcccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceee
Q 000635 586 LERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEV 665 (1380)
Q Consensus 586 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 665 (1380)
+++|.|.....+..|++|++|||++|.+.++-..-.+|.|.++|.|++| .+..+.. +++|-+|..|++.+|++.
T Consensus 314 lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie--- 387 (490)
T KOG1259|consen 314 LSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSG--LRKLYSLVNLDLSSNQIE--- 387 (490)
T ss_pred ccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhh--hHhhhhheeccccccchh---
Confidence 9999999988899999999999999999888666678999999999997 4777653 899999999999999876
Q ss_pred eccCccccccChhhhcCCCCCcEEEEEecCCCCCCCc
Q 000635 666 ETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEG 702 (1380)
Q Consensus 666 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 702 (1380)
.-.....+++|+.|++|.+.+|.+..+++.
T Consensus 388 -------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 388 -------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred -------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 234467889999999999999988777653
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=4.5e-11 Score=133.32 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=145.6
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCC-cccccCCcccc
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLE 604 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~ 604 (1380)
.+......+++.|++.. +|..+ ..+..|..|.|..|.+..+|..+++|..|.+|||+.|.++. |..++.|. |+
T Consensus 73 ~ltdt~~aDlsrNR~~e----lp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE----LPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LK 146 (722)
T ss_pred cccchhhhhcccccccc----CchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ce
Confidence 44555667788776654 66665 77888999999999999999999999999999999999988 77787764 89
Q ss_pred EEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCCC
Q 000635 605 VLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLP 684 (1380)
Q Consensus 605 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 684 (1380)
+|-+++|+++.+|..|+-+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|.+. ..+.++..|+
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------------~lp~El~~Lp 212 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------------DLPEELCSLP 212 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------------hCCHHHhCCc
Confidence 9999999999999999999999999999985 8889887 899999999999988665 5677888765
Q ss_pred CCcEEEEEecCCCCCCCcc-cccccceeeeeecCC
Q 000635 685 RLTTLEIEVRNDDILPEGF-FTKKLARFKISVGDE 718 (1380)
Q Consensus 685 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 718 (1380)
|..|++++|++..+|-.+ .++.|+.|.+..+..
T Consensus 213 -Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 213 -LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 999999999999999887 666777766655443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.1e-09 Score=109.74 Aligned_cols=125 Identities=23% Similarity=0.340 Sum_probs=47.6
Q ss_pred ecCcccccccccccCCCCCCEEEecCCCCCCccccc-CCccccEEEcccCCCccCChhhhccccccEEeccCcccccccc
Q 000635 563 FSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIG-KLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIA 641 (1380)
Q Consensus 563 L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~-~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p 641 (1380)
+..+.|...|. +.+..+++.|+|++|.|+.++.++ .+.+|+.|++++|.|+.++ ++..|++|++|++++|. ++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 33444555544 345567999999999999988888 6899999999999999986 68899999999999985 88886
Q ss_pred chhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCC
Q 000635 642 TNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILP 700 (1380)
Q Consensus 642 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 700 (1380)
......+++|++|++++|.+. .-..+..|+.+++|+.|++.+|.+...+
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp HHHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred cchHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchh
Confidence 553346999999999999876 2345688899999999999999876543
No 38
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=4.2e-07 Score=103.77 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHhc-----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 154 YEAFESRLSTLKSIRNALT-----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
...|+||++.++.+..++. ....+.+.++|++|+|||++|+.+++..... + ..+..+......++ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 4579999999999988886 2334568899999999999999999987632 2 22222211122222 2222
Q ss_pred HHhCCCc----c--ccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHhh--
Q 000635 229 EKLGLTL----R--EESESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSM-- 300 (1380)
Q Consensus 229 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~~-- 300 (1380)
..++... + +.-.......+...+ .+.+..+|+|+..+...+.. .. .+.+-|..||+...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~----~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL----DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee----cC---CCeEEEEecCCccccCHHHHh
Confidence 2332111 0 000111112222233 24555667776655544432 11 1245566677764333321
Q ss_pred CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 301 GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 301 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
.....+++++++.++..+++.+.++.... .-..+++..|++.|+|.|..+..++..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 11346899999999999999988842211 122356789999999999766555543
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=1.3e-09 Score=126.05 Aligned_cols=108 Identities=24% Similarity=0.214 Sum_probs=52.3
Q ss_pred hhCCCCccEEEecCcccc-cccccccCCCC---CCEEEecCCCCCC------cccccCC-ccccEEEcccCCCc-----c
Q 000635 552 FTGMRKLRVVHFSGMRLA-SLPYSIGLLQN---LQTLCLERSTVGD------IAIIGKL-KNLEVLSFLQSDIV-----M 615 (1380)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~l~-----~ 615 (1380)
|..+.+|+.|++++|.+. ..+..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 345556666666665554 22333333333 6666666665542 1234444 55666666665554 2
Q ss_pred CChhhhccccccEEeccCcccccc-----ccchhhcCCCCCcEEEcccccc
Q 000635 616 LPKEIGQLTKLRLLDLTDCFKLKV-----IATNVLSSLTRLEALYMHNCYV 661 (1380)
Q Consensus 616 lp~~i~~L~~L~~L~L~~~~~l~~-----~p~~~l~~L~~L~~L~l~~~~~ 661 (1380)
++..+..+.+|++|++++|. +.. ++.. +..+++|++|++++|.+
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 157 LAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCcc
Confidence 23334445556666665553 221 1111 33344566666655543
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=5e-07 Score=108.01 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=122.2
Q ss_pred cccccchHHHHHHHHHHhc----CCC-eEEEEEEeCCCchHHHHHHHHHHHhhhc---CCcc--EEEEEEcCCCcCHHHH
Q 000635 154 YEAFESRLSTLKSIRNALT----DPN-VSIIGVYGMGGIGKTTLAKEVARRAKED---NIFD--AVAFSEVSQTPDIKNI 223 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~----~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~~f~--~~~wv~~~~~~~~~~~ 223 (1380)
+..+.||++++++|...|. ... ..++.|+|++|+|||+.++.+.+.+... .... .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3568899999999998875 222 3467899999999999999999887532 1122 3678888777788889
Q ss_pred HHHHHHHhCCCccc--cchHHHHHHHHHHHHc--CCeEEEEEeCCCCccc-----hhhhhcCCCCCCCCCeEEEE--Eec
Q 000635 224 QGEIAEKLGLTLRE--ESESRRASSLYERLKK--EKKILVVLDNLWKSLD-----LETTIGIPYGDDHKGCKVLL--TTR 292 (1380)
Q Consensus 224 ~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~~ilv--TtR 292 (1380)
+..|++++....+. ....+....++..+.. ....+||||+|+.... +-.++..+ ...+++|++ +|.
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~---~~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP---TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh---hccCCeEEEEEecC
Confidence 99999888433221 1223345556665532 2345899999986531 22212221 223444444 443
Q ss_pred chH--------HHHhhCCCceeeCCCCCHHHHHHHHHhhcCC---CccChhhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000635 293 DRS--------VLLSMGSKENFPIGVLNEQEAWRLFKLTADD---DVENRRLKSIATQVAKACGGLPIALTTIAKAL 358 (1380)
Q Consensus 293 ~~~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 358 (1380)
..+ +...+. ...+..+|++.++..+++..++.. ...++.++-+|+.++..-|..=.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 221 111222 234677999999999999998842 22333334444444444444555655554444
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=9.4e-10 Score=127.37 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=35.5
Q ss_pred hCCCCccEEEecCcccc-----cccccccCCCCCCEEEecCCCCCC--------cccccCCccccEEEcccCCCc-cCCh
Q 000635 553 TGMRKLRVVHFSGMRLA-----SLPYSIGLLQNLQTLCLERSTVGD--------IAIIGKLKNLEVLSFLQSDIV-MLPK 618 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--------~~~i~~L~~L~~L~L~~~~l~-~lp~ 618 (1380)
..+.+|++|+++++.++ .++..+...++|++|+++++.+.. +..+.++.+|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 34444555555554442 233334444445555554444331 123444445555555554443 2233
Q ss_pred hhhcccc---ccEEeccCc
Q 000635 619 EIGQLTK---LRLLDLTDC 634 (1380)
Q Consensus 619 ~i~~L~~---L~~L~L~~~ 634 (1380)
.+..+.+ |++|++++|
T Consensus 100 ~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 100 VLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHhccCcccEEEeeCC
Confidence 3333333 555555544
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.2e-07 Score=99.96 Aligned_cols=223 Identities=17% Similarity=0.196 Sum_probs=130.2
Q ss_pred ccccccccchHHHH---HHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHH
Q 000635 151 IKGYEAFESRLSTL---KSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGE 226 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l---~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 226 (1380)
|.....++|.+..+ ..|.+++..+......+||++|+||||||+.++..... .|. .++-. .+++++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f~-----~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AFE-----ALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ceE-----EeccccccHHHHHHH
Confidence 55566777776655 34556666788888899999999999999999997763 242 22222 223333222
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEE--EecchHHHH---h
Q 000635 227 IAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLL--TTRDRSVLL---S 299 (1380)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilv--TtR~~~v~~---~ 299 (1380)
+ +.-.+....+++.+|++|.|..-. +-+. .++.-.+|.-|+| ||.++...- .
T Consensus 93 ~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~----lLp~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 I-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDA----LLPHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred H-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhh----hhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence 2 111122234789999999997553 3333 3344567777777 777764322 2
Q ss_pred hCCCceeeCCCCCHHHHHHHHHhhcCC---Ccc--Ch-hhHHHHHHHHHHhCCChHHHHH----HHHHhhcC---ChhHH
Q 000635 300 MGSKENFPIGVLNEQEAWRLFKLTADD---DVE--NR-RLKSIATQVAKACGGLPIALTT----IAKALRKK---SVPEW 366 (1380)
Q Consensus 300 ~~~~~~~~l~~L~~~~~~~l~~~~~~~---~~~--~~-~~~~~~~~i~~~~~g~Plai~~----~~~~l~~~---~~~~w 366 (1380)
.....++.+++|+.++..+++.+.+.. ... .. -.+++..-+++.++|--.++-. ++..-+.. ..+..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l 231 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELL 231 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 334578999999999999999985411 111 11 1235677788888887655332 22222222 22334
Q ss_pred HHHHHHhcCCCccccCCCchhhhhhHHHhhccCCch
Q 000635 367 ENALQELRRPSMESFQGVPKEAYSTIELSYKYLEGE 402 (1380)
Q Consensus 367 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~ 402 (1380)
++.+.+-.. ..+...+..-++..++.-|...=+++
T Consensus 232 ~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 232 EEILQRRSA-RFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHhhhhh-ccCCCcchHHHHHHHHHHhhccCCcC
Confidence 444433111 11111122234667777777776665
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.79 E-value=7.3e-07 Score=102.20 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=142.7
Q ss_pred ccccccccchHHHHHHHHHHhc-----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALT-----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
|.....|+||++.++.+..++. ....+.+.|+|++|+|||++|+.+++..... + .++........ ..+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~~~~-~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPALEKP-GDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccccCh-HHHH
Confidence 4466789999999998887774 2334578899999999999999999998632 2 22222211111 1222
Q ss_pred HHHHHhCCCc----c--ccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHh
Q 000635 226 EIAEKLGLTL----R--EESESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLS 299 (1380)
Q Consensus 226 ~i~~~l~~~~----~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~ 299 (1380)
.++..++... + +.-.......+...+ ++.+..+|+|+..+...+.. .+ .+.+-|..|+|...+...
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~----~l---~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRL----DL---PPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceee----cC---CCceEEeecCCcccCCHH
Confidence 2333322110 0 000000111122222 24455555655544333221 11 123445667664433332
Q ss_pred hC--CCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcCChhHHHHHHHHhcCCC
Q 000635 300 MG--SKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQELRRPS 377 (1380)
Q Consensus 300 ~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~ 377 (1380)
+. ....+++++++.++..+++.+.+..... .-..+++..|++.|+|.|..+..+...+. .|..... ...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~~~ 237 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---DGV 237 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---CCC
Confidence 21 1346899999999999999988743211 12235688999999999975555544322 1111100 000
Q ss_pred ccccCCCchhhhhhHHHhhccCCchhHHHHHH-hccCCCCC-CChHHHHHHHHhhcccccccchHHHHHHHHHHHH-HHh
Q 000635 378 MESFQGVPKEAYSTIELSYKYLEGEKLKKMFL-LCSLMPNP-CYTLDLLKYCMGLGMFQRVHKLEDARTKMHAWVH-ELV 454 (1380)
Q Consensus 378 ~~~~~~~~~~~~~~l~~s~~~L~~~~lk~~~~-~~a~fp~~-~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~ 454 (1380)
. ....-+.....+...+..|++.+ +..+. ....|+.+ +..+.+.... +.+ ....++.++ .|+
T Consensus 238 I--~~~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-g~~-----------~~~~~~~~e~~Li 302 (328)
T PRK00080 238 I--TKEIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-GEE-----------RDTIEDVYEPYLI 302 (328)
T ss_pred C--CHHHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-CCC-----------cchHHHHhhHHHH
Confidence 0 00000112334455566777663 55554 56666643 3444443321 111 122233455 788
Q ss_pred hccceeee
Q 000635 455 DSCLLLVD 462 (1380)
Q Consensus 455 ~~~ll~~~ 462 (1380)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999754
No 44
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=2.7e-08 Score=109.10 Aligned_cols=292 Identities=21% Similarity=0.235 Sum_probs=188.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
.|.+.++|.|||||||++.++.. .+. .+-+.+.++....-.+...+.-.+...++..... .......+..++. ++
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~-~r 88 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AAS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG-DR 88 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhh-hcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-hh
Confidence 47899999999999999999999 442 3346788888887778778877777778776532 1222334445554 78
Q ss_pred eEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHhhCCCceeeCCCCCHH-HHHHHHHhhc----CCCccC
Q 000635 256 KILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSMGSKENFPIGVLNEQ-EAWRLFKLTA----DDDVEN 330 (1380)
Q Consensus 256 ~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~~----~~~~~~ 330 (1380)
|.++|+||..+..+-..-....+..+...-.|+.|+|.... ........+++|+.. ++.++|...+ ..-.-.
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 99999999876633211111123344556678999997533 344567788888765 7889987766 222223
Q ss_pred hhhHHHHHHHHHHhCCChHHHHHHHHHhhcCChhHHHHHHH----HhcCCCccccCCCchhhhhhHHHhhccCCchhHHH
Q 000635 331 RRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQ----ELRRPSMESFQGVPKEAYSTIELSYKYLEGEKLKK 406 (1380)
Q Consensus 331 ~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~----~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk~ 406 (1380)
......+.+|.++.+|.|++|..+++..+.-...+....++ .+... .....-.++...+.+.+||.-|..- -+-
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~ 243 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERA 243 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHH
Confidence 34456688999999999999999999998775544333333 23222 1111112234778999999999887 488
Q ss_pred HHHhccCCCCCCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhhccceeeeCC--CCcEEecHHHHHHHHHHhhc
Q 000635 407 MFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLEDARTKMHAWVHELVDSCLLLVDDS--GDNFSMHDVVRDVAISIACR 484 (1380)
Q Consensus 407 ~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~~~~~~~~~~ 484 (1380)
.|.-++.|...|... ...|.+.|-... ...+. ....+..+++.+++.-.+. .-.|+.-+-+|.|+..+..+
T Consensus 244 ~~~rLa~~~g~f~~~--l~~~~a~g~~~~----~~~y~-~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 244 LFGRLAVFVGGFDLG--LALAVAAGADVD----VPRYL-VLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred Hhcchhhhhhhhccc--HHHHHhcCCccc----cchHH-HHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 899999998887665 444555543210 01111 2234567788887754322 22466666677776665543
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=6.3e-07 Score=105.89 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=109.2
Q ss_pred ccccccccchHHHHHH---HHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKS---IRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~---l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
|.....|+|++..+.. +.+++.....+.+.++|++|+||||+|+.+++.... .| ..+++.. ....++ +.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~---~~l~a~~-~~~~~i-r~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PF---EALSAVT-SGVKDL-REV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEeccc-ccHHHH-HHH
Confidence 3456679999988766 888887777778899999999999999999998752 23 2222221 111111 111
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEE--EecchHHH--H-hh
Q 000635 228 AEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLL--TTRDRSVL--L-SM 300 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilv--TtR~~~v~--~-~~ 300 (1380)
.+ ........+++.+|++|+++... ..+. +...+ ..|..+++ ||.+.... . ..
T Consensus 81 i~----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~-LL~~l---e~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 IE----------------EARQRRSAGRRTILFIDEIHRFNKAQQDA-LLPHV---EDGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HH----------------HHHHhhhcCCceEEEEechhhhCHHHHHH-HHHHh---hcCcEEEEEeCCCChhhhccHHHh
Confidence 11 11111223578899999998663 2333 22222 12444444 34443211 1 12
Q ss_pred CCCceeeCCCCCHHHHHHHHHhhcCCC-ccC-hhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 301 GSKENFPIGVLNEQEAWRLFKLTADDD-VEN-RRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 301 ~~~~~~~l~~L~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
.....+++.+++.++...++.+.+... ... .-..++.+.|++.++|.+..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 223689999999999999998876321 111 222466788999999999776544443
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.3e-09 Score=108.85 Aligned_cols=131 Identities=23% Similarity=0.269 Sum_probs=87.1
Q ss_pred cccceeEEEeccCCcccCCCCC-CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCC
Q 000635 504 EKKECYAISVRDSSIHELPEGL-KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQ 582 (1380)
Q Consensus 504 ~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 582 (1380)
.|+.++.+++++|.+..+.... -.|.+|.|+++.|..... ++ +..+.+|..||||+|.++++-..-.+|-|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-----~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-----QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-----hh-hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 3566777778877777776665 356777777776654332 12 3567777777777777766654445666777
Q ss_pred EEEecCCCCCCcccccCCccccEEEcccCCCccCC--hhhhccccccEEeccCcccccccc
Q 000635 583 TLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLP--KEIGQLTKLRLLDLTDCFKLKVIA 641 (1380)
Q Consensus 583 ~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~p 641 (1380)
+|.|++|.|...+.+++|++|.+||+++|+|..+. .+||+|+.|++|.|.+|. +..++
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 77777777777777777777777777777776553 366777777777777664 44333
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=2.9e-07 Score=99.11 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=97.4
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
...+.+.|+|++|+|||+||.++++....+ ...+.|+++..... . ...+.+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~--------------------~~~~~~~~-- 89 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F--------------------SPAVLENL-- 89 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h--------------------hHHHHhhc--
Confidence 334678999999999999999999997643 23456777532100 0 01122222
Q ss_pred CCeEEEEEeCCCCc---cchhhhhcCCCCC-CCCCeEEEE-Eecc---------hHHHHhhCCCceeeCCCCCHHHHHHH
Q 000635 254 EKKILVVLDNLWKS---LDLETTIGIPYGD-DHKGCKVLL-TTRD---------RSVLLSMGSKENFPIGVLNEQEAWRL 319 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~---~~~~~~~~~~~~~-~~~~~~ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 319 (1380)
.+.-+||+||+|.. ..|+..+...+.. ...|..+|+ |++. +.+..++.....+++++++.++.+++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 23359999999864 3444312222221 123455544 5543 35666666677899999999999999
Q ss_pred HHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 320 FKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
+++.+.... -.-.+++..-|++++.|-..++..+-..
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 998883211 1112366788899998877666554443
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.4e-09 Score=112.22 Aligned_cols=201 Identities=20% Similarity=0.180 Sum_probs=139.5
Q ss_pred ccceeEEEeccCCcccCCC---CCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccccccc--ccCCC
Q 000635 505 KKECYAISVRDSSIHELPE---GLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYS--IGLLQ 579 (1380)
Q Consensus 505 ~~~~r~lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~L~ 579 (1380)
.+++|.+++.++.....+. .-.|+++|.|+|+.|-..... .--.+...+++|+.|+++.|.+...-++ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~--~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF--PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH--HHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 5678888888887766653 237999999999987665443 2335568899999999999998744222 23678
Q ss_pred CCCEEEecCCCCCC--c-ccccCCccccEEEcccCC-CccCChhhhccccccEEeccCcccccccc-chhhcCCCCCcEE
Q 000635 580 NLQTLCLERSTVGD--I-AIIGKLKNLEVLSFLQSD-IVMLPKEIGQLTKLRLLDLTDCFKLKVIA-TNVLSSLTRLEAL 654 (1380)
Q Consensus 580 ~L~~L~L~~~~l~~--~-~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~~l~~~p-~~~l~~L~~L~~L 654 (1380)
+|+.|.|++|.++. + .....+++|..|+|.+|. +..--.....+..|+.|+|++|. +..++ ....+.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 99999999999875 3 445578999999999993 33223345667889999999986 44444 1237889999999
Q ss_pred EccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCCCcc---cccccceeee
Q 000635 655 YMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEGF---FTKKLARFKI 713 (1380)
Q Consensus 655 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l 713 (1380)
+++.|.+..-. .............++|+.|++..|.+..++.-- .+++|+.|.+
T Consensus 277 nls~tgi~si~-----~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIASIA-----EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcchhc-----CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 99888665100 011222334566789999999999887665432 3344444443
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=6.1e-07 Score=97.53 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=107.4
Q ss_pred cccc--chHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhC
Q 000635 155 EAFE--SRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLG 232 (1380)
Q Consensus 155 ~~~~--gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1380)
..|+ +....++.+.+++.....+.+.|+|++|+|||++|+.+++..... ...+++++++.... ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH-----
Confidence 3454 356678888888765566789999999999999999999987632 33456666543211 00
Q ss_pred CCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc---chhhhhcCCCCC-CCCCeEEEEEecchH---------HHHh
Q 000635 233 LTLREESESRRASSLYERLKKEKKILVVLDNLWKSL---DLETTIGIPYGD-DHKGCKVLLTTRDRS---------VLLS 299 (1380)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~~~~~~~~~-~~~~~~ilvTtR~~~---------v~~~ 299 (1380)
..+...+. +.-+||+||++... .|...+...+.. ...+.++|+||+... +...
T Consensus 82 ------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 01112222 22389999998653 233213222211 123347888887532 2223
Q ss_pred hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 300 MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 300 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
+.....+++++++.++...+++..+.... ..-..++++.|++.+.|+|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33346799999999999999987652111 1112355778888899999876655433
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=5.6e-08 Score=115.75 Aligned_cols=148 Identities=23% Similarity=0.344 Sum_probs=70.7
Q ss_pred ceeEEEeccCCcccCCCCCCCC--CccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEE
Q 000635 507 ECYAISVRDSSIHELPEGLKCP--QLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTL 584 (1380)
Q Consensus 507 ~~r~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 584 (1380)
.++.+++..+.+..++...... +|+.|++++|.... +|.. ...++.|+.|++++|.+..+|...+.+.+|+.|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----LPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhh----hhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3455555555555555544332 45555555444332 2212 244555555555555555555544455555555
Q ss_pred EecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEcccccc
Q 000635 585 CLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYV 661 (1380)
Q Consensus 585 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 661 (1380)
++++|.+.. |..++.+.+|++|++++|.+...+..+.++.++..|.+.+|. +..++.. ++.+.+|+.|++++|.+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceeccccccc
Confidence 555555554 333344444555555555444444445555555555544432 3332222 44555555555555433
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.55 E-value=5.5e-08 Score=115.84 Aligned_cols=170 Identities=25% Similarity=0.312 Sum_probs=105.1
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCC-CccEEEecCcccccccccccCCCCCCEEEecCCCCCC-cccccCCccc
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMR-KLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNL 603 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L 603 (1380)
..+.+..|.+.++.... +|... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.+ +...+.+.+|
T Consensus 114 ~~~~l~~L~l~~n~i~~----i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 114 ELTNLTSLDLDNNNITD----IPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred cccceeEEecCCccccc----Ccccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 45667777776655544 33332 3342 6777777777777777667777777777777777766 4444477777
Q ss_pred cEEEcccCCCccCChhhhccccccEEeccCccccccccchhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCC
Q 000635 604 EVLSFLQSDIVMLPKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHL 683 (1380)
Q Consensus 604 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 683 (1380)
+.|++++|.+..+|..++.+..|++|.+++|. ....+.. +.++.++..|.+.++.+. ..+..++.+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhccc
Confidence 77777777777777766666667777777663 2233322 566666666666555433 124556666
Q ss_pred CCCcEEEEEecCCCCCCCcccccccceeeee
Q 000635 684 PRLTTLEIEVRNDDILPEGFFTKKLARFKIS 714 (1380)
Q Consensus 684 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 714 (1380)
++++.|++++|.+..++......+|+.+.+.
T Consensus 255 ~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 255 SNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred cccceeccccccccccccccccCccCEEecc
Confidence 6777777777777666552244444444443
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.3e-08 Score=106.13 Aligned_cols=163 Identities=21% Similarity=0.254 Sum_probs=80.2
Q ss_pred ecccccccccccccccccccCCCCCCCCCCCCCccEEEeccccccccccchhhHhhhccccEEEEecccccccccccccc
Q 000635 960 VLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQRLEISNCMVLQEIISKDRA 1039 (1380)
Q Consensus 960 ~l~~L~~L~L~~~~l~~i~~~~~l~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 1039 (1380)
.||+|+.|+|+.|.+..-|....- ..++.|+.|.|+.|. +..--.......+|+|+.|++.++..+. ...
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~----~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~-- 239 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTT----LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIIL---IKA-- 239 (505)
T ss_pred hcccchhcccccccccCCccccch----hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccc---eec--
Confidence 356666666666655544433311 123666666676665 2211112334456677777776664211 100
Q ss_pred cccCCCCCeeecccccceecccccccccccCCCCcCCCcccceeeeeccccceeccccccchhhc--cc--CCCcccccc
Q 000635 1040 EADQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDVEMIL--MG--DFPHHLFGC 1115 (1380)
Q Consensus 1040 ~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~~~~~--~~--~~~~~~l~~ 1115 (1380)
.+...+..|+.|+|++ +++.++........ +|.|..|+++.|.+..+- +. .-....+++
T Consensus 240 ------~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~----------l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 240 ------TSTKILQTLQELDLSN-NNLIDFDQGYKVGT----------LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred ------chhhhhhHHhhccccC-Cccccccccccccc----------ccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 0111355677777776 34444443333222 344444444444333211 00 001244677
Q ss_pred ceEEEeeCCCCcccch-HHHhhcccCceEEEeccc
Q 000635 1116 LKQVAVATDESECFPL-GLLERFLNMEDLYLRACS 1149 (1380)
Q Consensus 1116 L~~L~l~~~~~~~~p~-~~l~~l~~L~~L~l~~c~ 1149 (1380)
|+.|++..|.+..++. .-+..+.+|+.|.+..+.
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccc
Confidence 7777776666655543 334456677777766655
No 53
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.48 E-value=3.5e-06 Score=107.20 Aligned_cols=306 Identities=17% Similarity=0.204 Sum_probs=174.6
Q ss_pred cccchHHHHHHHHHHhc---CCCeEEEEEEeCCCchHHHHHHHHHHHhhhc-CCccEEEEEEcCCCcC---HHHHHHHHH
Q 000635 156 AFESRLSTLKSIRNALT---DPNVSIIGVYGMGGIGKTTLAKEVARRAKED-NIFDAVAFSEVSQTPD---IKNIQGEIA 228 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~---~~~~~~~i~ 228 (1380)
+++||+.+++.|...+. .+...++.|.|.+|+|||+++++|......+ +.|-.-.+-...+... ..+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 37899999999999886 4566799999999999999999999988744 1111111111112221 223333333
Q ss_pred HHh-------------------CCCcc-------------c----------cchHHH-----HHHHHHHHHcCCeEEEEE
Q 000635 229 EKL-------------------GLTLR-------------E----------ESESRR-----ASSLYERLKKEKKILVVL 261 (1380)
Q Consensus 229 ~~l-------------------~~~~~-------------~----------~~~~~~-----~~~l~~~l~~~~~~LlVl 261 (1380)
.++ |.... + .....+ ...+.....+.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 21100 0 000011 111222223457999999
Q ss_pred eCCCCcc--chhhhhcCCCCCC----CCCeEEEE--Eecch--HHHHhhCCCceeeCCCCCHHHHHHHHHhhcCCCccCh
Q 000635 262 DNLWKSL--DLETTIGIPYGDD----HKGCKVLL--TTRDR--SVLLSMGSKENFPIGVLNEQEAWRLFKLTADDDVENR 331 (1380)
Q Consensus 262 Ddv~~~~--~~~~~~~~~~~~~----~~~~~ilv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 331 (1380)
||+.-.+ .++- +....... .....|.. |.+.. .+.........+.|.||+..+...+.....+.....
T Consensus 161 eDlhWaD~~SL~l-L~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~- 238 (849)
T COG3899 161 EDLHWADSASLKL-LQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL- 238 (849)
T ss_pred ecccccChhHHHH-HHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc-
Confidence 9994222 1111 11111000 01112222 33322 112232334689999999999999999998663322
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHhhcC-------ChhHHHHHHHHhcCCCccccCCCchhhhhhHHHhhccCCchhH
Q 000635 332 RLKSIATQVAKACGGLPIALTTIAKALRKK-------SVPEWENALQELRRPSMESFQGVPKEAYSTIELSYKYLEGEKL 404 (1380)
Q Consensus 332 ~~~~~~~~i~~~~~g~Plai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l 404 (1380)
..+....|+++..|+|+-+..+-..+.+. +...|..-..++.. ...-+++...+..-.+.||.. .
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-H
Confidence 23568899999999999999999998764 22234322222211 111122445688889999998 6
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhhcccccccchHHHHHHHHHHHHHHhhccceeee-----CCC-CcE---EecHHHH
Q 000635 405 KKMFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLEDARTKMHAWVHELVDSCLLLVD-----DSG-DNF---SMHDVVR 475 (1380)
Q Consensus 405 k~~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~-~~~---~mHdlv~ 475 (1380)
++.+...|++...|+.+.|...+-.. ....+....+.|.+..++... ... ... ..||.|+
T Consensus 311 ~~Vl~~AA~iG~~F~l~~La~l~~~~-----------~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 311 REVLKAAACIGNRFDLDTLAALAEDS-----------PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHHhCccCCHHHHHHHHhhc-----------hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999999988887666655321 112223345555554444311 111 112 5688888
Q ss_pred HHHHHHh
Q 000635 476 DVAISIA 482 (1380)
Q Consensus 476 ~~~~~~~ 482 (1380)
+.|....
T Consensus 380 qaaY~~i 386 (849)
T COG3899 380 QAAYNLI 386 (849)
T ss_pred HHHhccC
Confidence 8776543
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=9.7e-06 Score=97.90 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=140.2
Q ss_pred cccccccccchHHHHHHHHHHhcC----CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTD----PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
.|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-+++++..+... ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HH
Confidence 455667899999999999999862 2257899999999999999999999875 33 33445554333222 22
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc------hhhhhcCCCCCCCCCeEEEEEecchH-HHH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD------LETTIGIPYGDDHKGCKVLLTTRDRS-VLL 298 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~ilvTtR~~~-v~~ 298 (1380)
.++...... ..+...++-+||+|+++.... +.. +...+. ..+..||+|+.+.. ...
T Consensus 83 ~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~a-L~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 83 RVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARA-ILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHH-HHHHHH--cCCCCEEEeccCccccch
Confidence 222211100 001112677999999986522 333 222221 22345666664431 111
Q ss_pred --hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcC----ChhHHHHHHHH
Q 000635 299 --SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKK----SVPEWENALQE 372 (1380)
Q Consensus 299 --~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~----~~~~w~~~l~~ 372 (1380)
.......+++.+++.++....+...+...... -..++...|++.++|-...+......+... +.+....+..
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 11234578999999999999888777221111 113568899999999877655444333322 2222222211
Q ss_pred hcCCCccccCCCchhhhhhHHHhhccCCchhHHHHHHhccCCCCCCChHHHHHHHHhhcccccccchHH
Q 000635 373 LRRPSMESFQGVPKEAYSTIELSYKYLEGEKLKKMFLLCSLMPNPCYTLDLLKYCMGLGMFQRVHKLED 441 (1380)
Q Consensus 373 l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~lk~~~~~~a~fp~~~~~~~li~~w~~~g~~~~~~~~~~ 441 (1380)
.+....++.++..-+..=....+...+.. -+.. .+.+-.|+.+.+......+++
T Consensus 224 ---------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-----~~~~-~~~i~~~l~en~~~~~~~~~~ 277 (482)
T PRK04195 224 ---------RDREESIFDALDAVFKARNADQALEASYD-----VDED-PDDLIEWIDENIPKEYDDPED 277 (482)
T ss_pred ---------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-----ccCC-HHHHHHHHHhccccccCCHHH
Confidence 11112366666655552222222332211 1111 256778999998765444333
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.44 E-value=1.7e-06 Score=100.71 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=114.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH--HHHHH--H
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI--KNIQG--E 226 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~--~ 226 (1380)
|.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.+++++..+. ..+.. .
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 4455778999999999999998777667889999999999999999998763221122445554432100 00000 0
Q ss_pred HHHHhCCC-ccccchHHHHHHHHHHHHc-----CCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEEecchH-HH
Q 000635 227 IAEKLGLT-LREESESRRASSLYERLKK-----EKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLTTRDRS-VL 297 (1380)
Q Consensus 227 i~~~l~~~-~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvTtR~~~-v~ 297 (1380)
....++.. .......+....+.+.... ..+-+||+||++.... ... +...+......+++|+||.... +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~-L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQA-LRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHH-HHHHHHhccCCCeEEEEeCChhhCc
Confidence 00000000 0000112223333333221 2345899999976532 222 2222222234567888775432 21
Q ss_pred Hhh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 298 LSM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 298 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
..+ .....+++.+++.++...++...+...... -..+.++.+++.++|.+..+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 211 223578999999999999998876221111 1235688899999988766543
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-05 Score=90.41 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=128.8
Q ss_pred cccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHh
Q 000635 156 AFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKL 231 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1380)
.+.+|+++++++...|. ++...-+.|+|.+|+|||+.++.++++.+....=..+++|++-...+..+++..|++.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999998775 33334599999999999999999999988643222289999999999999999999998
Q ss_pred C-CCccccchHHHHHHHHHHHHc-CCeEEEEEeCCCCccch-----hhhhcCCCCCCCCCeE--EEEEecchHHHH----
Q 000635 232 G-LTLREESESRRASSLYERLKK-EKKILVVLDNLWKSLDL-----ETTIGIPYGDDHKGCK--VLLTTRDRSVLL---- 298 (1380)
Q Consensus 232 ~-~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~-----~~~~~~~~~~~~~~~~--ilvTtR~~~v~~---- 298 (1380)
+ ....+....+....+.+.+.. ++.+++|||+++....- -.+++.+ ....++ ||..+.+.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~---~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP---GENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc---cccceeEEEEEEeccHHHHHHhhh
Confidence 5 233344555566677777654 68899999999865322 1212211 112343 444554443333
Q ss_pred ----hhCCCceeeCCCCCHHHHHHHHHhhcC----CCccChhhHHHHHHHHHHhCC-ChHHHHHH
Q 000635 299 ----SMGSKENFPIGVLNEQEAWRLFKLTAD----DDVENRRLKSIATQVAKACGG-LPIALTTI 354 (1380)
Q Consensus 299 ----~~~~~~~~~l~~L~~~~~~~l~~~~~~----~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 354 (1380)
.++. ..+..+|-+.+|-...+..++. ....+++.-+.+..++..-+| .=.||..+
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 3478999999999999998882 223333333444444444454 33444443
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.3e-06 Score=95.52 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=109.9
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCc-------------------cEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIF-------------------DAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f-------------------~~~~ 210 (1380)
|....+++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++.......+ ..+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34556789999999999998876654 467899999999999999999987522111 1112
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
++..+... ..+.+..+.+.+. .+++-++|+|+++... .+..++. .+......
T Consensus 92 ~~~~~~~~---------------------~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk-~lEe~~~~ 149 (363)
T PRK14961 92 EIDAASRT---------------------KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLK-TLEEPPQH 149 (363)
T ss_pred EecccccC---------------------CHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHH-HHhcCCCC
Confidence 22221111 1222333333332 1355699999998764 3444222 22223345
Q ss_pred eEEEEEecch-HHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 285 CKVLLTTRDR-SVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 285 ~~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
.++|++|.+. .+... ......+++.+++.++..+.+...+..... .-.++.++.|++.++|.|..+
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 6677766543 23222 222468999999999999998886622111 112345788999999988643
No 58
>PTZ00202 tuzin; Provisional
Probab=98.40 E-value=1.1e-05 Score=89.89 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=103.5
Q ss_pred ccccccccccchHHHHHHHHHHhcC---CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTD---PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..|++...|+||++++..+...|.+ ...++++|+|++|+||||+++.++.... ....+++.. +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHH
Confidence 3466778899999999999998863 2245899999999999999999986654 113333333 6799999
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHH----c-CCeEEEEEeCCCCccchhhhhc--CCCCCCCCCeEEEEEecchHHHH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLK----K-EKKILVVLDNLWKSLDLETTIG--IPYGDDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlVlDdv~~~~~~~~~~~--~~~~~~~~~~~ilvTtR~~~v~~ 298 (1380)
.++++||.... ....+....+.+.+. . +++.+||+-==+ -..+..... ..+.....-|.|++----+.+..
T Consensus 328 ~LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 99999998432 222344444444433 2 566777764221 111111000 01222344566776443332221
Q ss_pred ---hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 299 ---SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 299 ---~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
....-..|-+++++.++|.++.+...
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11222468899999999999887665
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.2e-06 Score=97.38 Aligned_cols=179 Identities=13% Similarity=0.167 Sum_probs=112.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1380)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++...... .|--++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 45667899999999999999986663 5789999999999999999999875321 111122
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
.++++....+ +.++.+++... .+++-++|+|+|+... .... +...+-....+
T Consensus 91 EIDAAs~~~V---------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NA-LLKtLEEPP~~ 148 (702)
T PRK14960 91 EIDAASRTKV---------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNA-LLKTLEEPPEH 148 (702)
T ss_pred EecccccCCH---------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHH-HHHHHhcCCCC
Confidence 3333222222 22233333221 2466799999998663 3333 22222222345
Q ss_pred eEEEEEecchH-HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 285 CKVLLTTRDRS-VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 285 ~~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
.++|++|.+.. +.. .......+++.+++.++..+.+.+.+..... .-..+.+..|++.++|-+..+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 67777776542 221 2233468999999999999999887732211 1123457889999999875443
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.37 E-value=5.5e-06 Score=94.49 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=110.0
Q ss_pred cccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCcc-EEEEEEcCCCcCHHHHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFD-AVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
.|....+++|.++.++.|.+++..++.+-+.++|++|+||||+|..+++..... .|. .++-++.++...... .+.+.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHH
Confidence 355667899999999999888877776778899999999999999999987432 222 233344443333222 22222
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEEecch-HHHHh-hCCCc
Q 000635 229 EKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLTTRDR-SVLLS-MGSKE 304 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~~-~~~~~ 304 (1380)
+.+..... ....++.-++|+|+++.... ... +...+-.....+++++++... .+... .....
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~a-L~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQA-LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHH-HHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 11110000 00113567999999987632 222 222222223456777766542 22111 11235
Q ss_pred eeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 305 NFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 305 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
.+++++++.++....+...+...... -..+.+..|++.++|-...+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 79999999999999998877321111 11345788999999877443
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=6.5e-06 Score=98.73 Aligned_cols=180 Identities=14% Similarity=0.175 Sum_probs=114.6
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1380)
+....+++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+++.+..+. .|.-++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 45567899999999999999986663 4678999999999999999999875321 111233
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
+++......+. .++.+++... .++.-++|||+++... .+..+++ .+-....+
T Consensus 92 EIDAas~rgVD---------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLK-tLEEPP~~ 149 (830)
T PRK07003 92 EMDAASNRGVD---------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLK-TLEEPPPH 149 (830)
T ss_pred EecccccccHH---------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHH-HHHhcCCC
Confidence 44333222222 2223333221 2455689999998763 3555333 22223446
Q ss_pred eEEEEEecchHHHH--hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH-HHHH
Q 000635 285 CKVLLTTRDRSVLL--SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI-ALTT 353 (1380)
Q Consensus 285 ~~ilvTtR~~~v~~--~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~ 353 (1380)
.++|+||++..-.. .......+++.+++.++..+.+.+....... .-..+....|++.++|... |+.+
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 78888777653222 1223468999999999999999887733211 1123557889999988663 4444
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.36 E-value=6.7e-06 Score=88.88 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=106.4
Q ss_pred cccc-c-hHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhC
Q 000635 155 EAFE-S-RLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLG 232 (1380)
Q Consensus 155 ~~~~-g-R~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1380)
..|+ | -...+..+.++......+.+.|+|++|+|||+|++++++..... -..+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------
Confidence 3444 4 33455666666544555689999999999999999999987643 24566776532100
Q ss_pred CCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc---cchhhhhcCCCCC-CCCC-eEEEEEecch---------HHHH
Q 000635 233 LTLREESESRRASSLYERLKKEKKILVVLDNLWKS---LDLETTIGIPYGD-DHKG-CKVLLTTRDR---------SVLL 298 (1380)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~~~~~~~~~-~~~~-~~ilvTtR~~---------~v~~ 298 (1380)
....+.+.+. +--+|++||+... ..|+..+...+.. ...| .++|+||+.+ ++..
T Consensus 87 ----------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 ----------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred ----------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 0011122222 1238899999754 3344322222211 1123 4799999754 3344
Q ss_pred hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 299 SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 299 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
++....+++++++++++-.+++++++.... -.-.++++.-|++++.|...++..+-..
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 556667999999999999999988662211 1122467888888888877665544433
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6e-06 Score=101.12 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=112.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCC-------------------ccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNI-------------------FDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 210 (1380)
|.....++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++.+..... |.-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 455678999999999999998876655 5689999999999999999998753211 11123
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~ 284 (1380)
+++......+. .++.+.+.+. .+++-++|||+++.. .....+++ .+-.....
T Consensus 92 EidAas~~kVD---------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLK-tLEEPP~~ 149 (944)
T PRK14949 92 EVDAASRTKVD---------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLK-TLEEPPEH 149 (944)
T ss_pred EeccccccCHH---------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHH-HHhccCCC
Confidence 33222111122 2222222221 356779999999866 33444222 22222335
Q ss_pred eEEEEEecc-hHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 285 CKVLLTTRD-RSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 285 ~~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
.++|++|.+ ..+... ......+++.+++.++..+++.+.+.... .....+.+..|++.++|.|.-+..+
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 566665544 333322 22346899999999999999988773211 1112356888999999988644433
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=4.4e-06 Score=88.85 Aligned_cols=177 Identities=21% Similarity=0.235 Sum_probs=108.3
Q ss_pred ccccccccchHHHHH---HHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLK---SIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~---~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
|....++||.+..+- -|...+..++.+.+.+||++|+||||||+.++...+... ..||..+-...-..-.+.|
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHH
Confidence 334455566554432 233444567888999999999999999999999877443 4566665443322223333
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEE--EecchHHHH---hh
Q 000635 228 AEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLL--TTRDRSVLL---SM 300 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilv--TtR~~~v~~---~~ 300 (1380)
.++- +- .....++|.+|.+|.|..-. +-+. .+|.-..|.-++| ||.++...- .+
T Consensus 210 fe~a--------------q~-~~~l~krkTilFiDEiHRFNksQQD~----fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 210 FEQA--------------QN-EKSLTKRKTILFIDEIHRFNKSQQDT----FLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHH--------------HH-HHhhhcceeEEEeHHhhhhhhhhhhc----ccceeccCceEEEecccCCCccchhHHHH
Confidence 3221 00 11123789999999997542 3222 3445566776666 888775432 34
Q ss_pred CCCceeeCCCCCHHHHHHHHHhhc---CCC------ccC---hhhHHHHHHHHHHhCCChHH
Q 000635 301 GSKENFPIGVLNEQEAWRLFKLTA---DDD------VEN---RRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 301 ~~~~~~~l~~L~~~~~~~l~~~~~---~~~------~~~---~~~~~~~~~i~~~~~g~Pla 350 (1380)
....++-+++|..++...++.+.. ++. .+. .-...+.+-++..|+|-..+
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 445789999999999999887744 211 111 12234566677777776643
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.9e-08 Score=102.23 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=120.8
Q ss_pred hHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccccCCCCchhhhhhcceeEeeeccccc
Q 000635 1131 LGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPNSKLEHILQYLEKLFVSYCQSL 1210 (1380)
Q Consensus 1131 ~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l 1210 (1380)
..++..|..|+.|.|.+..+.+-+. ..+..-.+|+.|+|+.|+++++... .-.+.+|+.|++|+|+-|.-.
T Consensus 203 ~~iLs~C~kLk~lSlEg~~LdD~I~-------~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLRLDDPIV-------NTIAKNSNLVRLNLSMCSGFTENAL--QLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHHhhhhccccccccCcHHH-------HHHhccccceeeccccccccchhHH--HHHHHhhhhHhhcCchHhhcc
Confidence 3467789999999999877554322 2344567899999999999887621 235678999999999999766
Q ss_pred ccccCCcccc-ccccCEEEeccCc-CcccccchHHHhhcccccEEEEecccCcceeeccCCCCCCCCCccccccccceee
Q 000635 1211 LILLPSASIS-FRNLTELQVTNCK-KLINLVTSSVAKSLVGLLMLNIYGCRAMTEVVTGDENGAANPKEEIVFTKLKSIS 1288 (1380)
Q Consensus 1211 ~~~~p~~~~~-~~~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 1288 (1380)
+..+...+.. -.+|+.|+|+||. ++..-........++.|.+||++.|..++.-.. .++..|+.|+.|.
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---------~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---------QEFFKFNYLQHLS 344 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH---------HHHHhcchheeee
Confidence 5442222222 2479999999997 333222334678899999999999988766221 1566899999999
Q ss_pred eccCCCcccccCCCccccCCCccEEEEeccCC
Q 000635 1289 LVDLDSLTSFCSANYTFNFPSLQDLEVIGCPK 1320 (1380)
Q Consensus 1289 l~~c~~L~~l~~~~~~~~~~sL~~L~i~~Cp~ 1320 (1380)
++.|..+---..- .....|+|.+|+|.||-.
T Consensus 345 lsRCY~i~p~~~~-~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLL-ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHee-eeccCcceEEEEeccccC
Confidence 9999765321111 135679999999999854
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=1.6e-05 Score=91.80 Aligned_cols=184 Identities=11% Similarity=0.097 Sum_probs=109.0
Q ss_pred cccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
.|.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+-++.+.......+...+ .
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i-~ 90 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKI-K 90 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHH-H
Confidence 345567799999999999999987766678999999999999999999987533211112222222222221111111 1
Q ss_pred HhCCCccccchHHHHHHHHHHH--HcCCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEEecch-HHHH-hhCCC
Q 000635 230 KLGLTLREESESRRASSLYERL--KKEKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLTTRDR-SVLL-SMGSK 303 (1380)
Q Consensus 230 ~l~~~~~~~~~~~~~~~l~~~l--~~~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~-~~~~~ 303 (1380)
++ .... ....+-++|+|+++.... ... +...+......+++|+++... .+.. .....
T Consensus 91 ~~----------------~~~~~~~~~~~~vviiDe~~~l~~~~~~~-L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 91 EF----------------ARTAPVGGAPFKIIFLDEADNLTSDAQQA-LRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HH----------------HhcCCCCCCCceEEEEeCcccCCHHHHHH-HHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 11 0000 012456899999876522 222 222222233456677776432 1111 11123
Q ss_pred ceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 304 ENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 304 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
..+++.+++.++....+...+..... .-..+.+..+++.++|.+..+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999999887732111 1123568889999999886643
No 67
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.6e-06 Score=84.02 Aligned_cols=120 Identities=23% Similarity=0.240 Sum_probs=79.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
.+++.|.|+.|+||||++++++++.. ....+++++..+......... +....+.+.. .++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhh-ccC
Confidence 36899999999999999999998876 245577887665432111000 0112222222 247
Q ss_pred eEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHHh------hCCCceeeCCCCCHHHH
Q 000635 256 KILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLS------MGSKENFPIGVLNEQEA 316 (1380)
Q Consensus 256 ~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 316 (1380)
+.+|++|++....+|...+... .+..+..+|++|+........ .+....+++.||+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l-~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFL-VDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHH-HHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7899999999998888745443 333456799999987755532 11224689999998763
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=2.2e-06 Score=83.96 Aligned_cols=115 Identities=26% Similarity=0.349 Sum_probs=81.3
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcC---CccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc-cchHHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDN---IFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE-ESESRRASSLYERL 251 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 251 (1380)
.+.+.|+|.+|+|||++++++++...... .-..++|+.+....+...+...|+.+++..... ....+....+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999875311 124577999988889999999999999987665 44555567777888
Q ss_pred HcCCeEEEEEeCCCCc-c--chhhhhcCCCCCCCCCeEEEEEecc
Q 000635 252 KKEKKILVVLDNLWKS-L--DLETTIGIPYGDDHKGCKVLLTTRD 293 (1380)
Q Consensus 252 ~~~~~~LlVlDdv~~~-~--~~~~~~~~~~~~~~~~~~ilvTtR~ 293 (1380)
.+.+..+||+|+++.. . .++. +.... +..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~-l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEF-LRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHH-HHHHT--CSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHH-HHHHH--hCCCCeEEEEECh
Confidence 7677789999999765 2 2222 32222 2567788887765
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.8e-05 Score=92.04 Aligned_cols=189 Identities=18% Similarity=0.181 Sum_probs=110.7
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCC-------------------ccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNI-------------------FDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 210 (1380)
|.....++|.+.....|...+..++. ..+.++|++|+||||+|+.+++....... +..+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 45567899999998888888877765 46889999999999999999998653211 11233
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEE
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVL 288 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~il 288 (1380)
.++++....+.++ +.+...... .-..+++-++|+|+++.. ...+. +...+........+|
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~-LLk~LE~p~~~vv~I 151 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNA-LLKTLEEPPSHVVFV 151 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHH-HHHHHHhCCCcEEEE
Confidence 3343332223222 122211110 001246679999999755 22333 222222222344444
Q ss_pred EEecc-hHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCC-hHHHHHHHHHh
Q 000635 289 LTTRD-RSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGL-PIALTTIAKAL 358 (1380)
Q Consensus 289 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~~~~l 358 (1380)
++|.+ ..+... ......+++.+++.++....+.+.+..... .-..+++..|++.++|- +.|+..+..+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44443 333332 223468999999999999998887722111 11235577888877654 56666665443
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.4e-05 Score=90.96 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=112.3
Q ss_pred ccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhh----hcCCccEEEEEEc-CCCcCHHHHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAK----EDNIFDAVAFSEV-SQTPDIKNIQGEIA 228 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 228 (1380)
.+++|.+...+.+.+++..++. ....++|+.|+||||+|..+++..- ...|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4678999999999999976654 4778999999999999999999763 2346776666542 222233332 2222
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecchHHHH--hhCCCc
Q 000635 229 EKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDRSVLL--SMGSKE 304 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~--~~~~~~ 304 (1380)
+.+.... ..+++-++|+|+++.. ..+.. +...+.....++.+|++|.+.+... ......
T Consensus 83 ~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~na-LLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 83 EEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNA-FLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHhcCc----------------ccCCceEEEEechhhcCHHHHHH-HHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 2221110 0145667777777544 44555 3333444456788888887654321 122346
Q ss_pred eeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 305 NFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 305 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
.+++.++++++....+.+...... .+.++.++..++|.|..+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDIK-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCCC-----HHHHHHHHHHcCCCHHHHH
Confidence 899999999999888876653211 2337788999999886544
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.2e-05 Score=93.75 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=110.9
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|....+++|.+..++.|..++..++. ..+.++|++|+||||+|+.+++.....+.+...+|.+.+. ..+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~ 81 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRR 81 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhc
Confidence 44556789999999999998886664 4669999999999999999999876432222222222110 00000
Q ss_pred HhCC-----CccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecc-hHHH
Q 000635 230 KLGL-----TLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRD-RSVL 297 (1380)
Q Consensus 230 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~-~~v~ 297 (1380)
.... +.......+.++.+.+.+. .+++-++|+|+++.. ..+.. +...+......+.+|++|.. ..+.
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~na-LLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNA-LLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHH-HHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0000 0000111122233333222 146669999999865 23444 22223223344555555543 3332
Q ss_pred Hhh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 298 LSM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 298 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
..+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+.-+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 222 234689999999999999999877221111 12356889999999988644
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1e-06 Score=72.35 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=26.7
Q ss_pred CccEEEecCccccccc-ccccCCCCCCEEEecCCCCCC--cccccCCccccEEEcccCC
Q 000635 557 KLRVVHFSGMRLASLP-YSIGLLQNLQTLCLERSTVGD--IAIIGKLKNLEVLSFLQSD 612 (1380)
Q Consensus 557 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~ 612 (1380)
+|++|++++|.++.+| ..|.++++|++|++++|.++. +..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3445555555555443 244445555555555444444 2344445555555554443
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.4e-05 Score=89.00 Aligned_cols=198 Identities=12% Similarity=0.054 Sum_probs=115.1
Q ss_pred cccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCC--ccEEEEEEcCCCcCHHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNI--FDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.|.....++|.++..+.+...+..++. ..+.|+|+.|+||||+|..+++..-.... +... ............+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 456677899999999999999986664 47899999999999999999998754211 1111 00111111122333
Q ss_pred HHHHhCC-------Cccc-------cchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeE
Q 000635 227 IAEKLGL-------TLRE-------ESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCK 286 (1380)
Q Consensus 227 i~~~l~~-------~~~~-------~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 286 (1380)
+...-.. ..+. .-..+.++.+.+.+. .+++-++|+|+++... ....++... -....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L-EEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL-EEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH-hcCCCCce
Confidence 3222110 0000 011344555555554 2567799999998763 223322211 11122344
Q ss_pred -EEEEecchHHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 287 -VLLTTRDRSVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 287 -ilvTtR~~~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
|++|++...+.. .......+++.+++.++..+++.+...... -..+.+..+++.++|.|.....+
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444444332322 112235899999999999999987542211 11345778999999999865433
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=6.9e-06 Score=82.73 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc
Q 000635 158 ESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE 237 (1380)
Q Consensus 158 ~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 237 (1380)
+||++.+..+...+.....+.+.|+|++|+|||++|+++++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788889999998876666789999999999999999999998622 2446677765443322211111000
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEEeCCCCc-----cchhhhhcCCCCC--CCCCeEEEEEecch
Q 000635 238 ESESRRASSLYERLKKEKKILVVLDNLWKS-----LDLETTIGIPYGD--DHKGCKVLLTTRDR 294 (1380)
Q Consensus 238 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~~~~~~~~~--~~~~~~ilvTtR~~ 294 (1380)
............++.++|+||++.. ..+...+...... ...+.+||+||...
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111111256789999999854 2222222222111 13577888888865
No 75
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.6e-06 Score=107.85 Aligned_cols=101 Identities=23% Similarity=0.372 Sum_probs=60.6
Q ss_pred ccEEEecCcccc-cccccccCCCCCCEEEecCCCCCC--cccccCCccccEEEcccCCCc-cCChhhhccccccEEeccC
Q 000635 558 LRVVHFSGMRLA-SLPYSIGLLQNLQTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIV-MLPKEIGQLTKLRLLDLTD 633 (1380)
Q Consensus 558 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~ 633 (1380)
++.|+|++|.+. .+|..|+.+++|++|+|++|.+.. |..++++++|++|+|++|.+. .+|..+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666665 456666666666666666666654 455666666666666666665 5566666666666666666
Q ss_pred ccccccccchhhcC-CCCCcEEEcccc
Q 000635 634 CFKLKVIATNVLSS-LTRLEALYMHNC 659 (1380)
Q Consensus 634 ~~~l~~~p~~~l~~-L~~L~~L~l~~~ 659 (1380)
|.....+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 6544455544 332 234445555544
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.3e-05 Score=94.86 Aligned_cols=179 Identities=11% Similarity=0.147 Sum_probs=111.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC------------------------C
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN------------------------I 205 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------------~ 205 (1380)
+....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+.... .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 45567899999999999999987664 4678999999999999999999875311 0
Q ss_pred ccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCC
Q 000635 206 FDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYG 279 (1380)
Q Consensus 206 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~ 279 (1380)
|.-+++++..... ..+.++.+.+.+. .++.-++|+|+++.. ..+..+++ .+-
T Consensus 92 hpDviEIdAas~~---------------------gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLK-TLE 149 (700)
T PRK12323 92 FVDYIEMDAASNR---------------------GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLK-TLE 149 (700)
T ss_pred CCcceEecccccC---------------------CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHH-hhc
Confidence 1112233222211 1223333433332 256679999999876 33444333 222
Q ss_pred CCCCCeEEEEEec-chHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 280 DDHKGCKVLLTTR-DRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 280 ~~~~~~~ilvTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
.-..++++|++|. ...+... ......+++..++.++..+.+.+.+...... ...+..+.|++.++|.|....
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2234455555554 4443322 2224689999999999999988776322111 113456789999999986443
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=3e-06 Score=95.43 Aligned_cols=59 Identities=8% Similarity=0.224 Sum_probs=28.6
Q ss_pred ccceEEEeeCCCCcccchHHHhhcccCceEEEeccceEEEeccCccccccccccccccceEecccccccccc
Q 000635 1114 GCLKQVAVATDESECFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHL 1185 (1380)
Q Consensus 1114 ~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l 1185 (1380)
.+++.|+++++.+..+|. -.++|++|.+++|...+.+|.. + .++|+.|++++|.++.++
T Consensus 52 ~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~-------L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGS-------I--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred cCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCch-------h--hhhhhheEccCccccccc
Confidence 445555555445555551 2334555555555544443311 1 235555555555555443
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=2e-05 Score=84.06 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=89.6
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+.+.|+|++|+|||+|++.+++.... .+++.. .+...+ ...+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~--------------------~~~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA--------------------ANAAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH--------------------HHhhhc-
Confidence 3467999999999999999998876431 244321 111111 111211
Q ss_pred CeEEEEEeCCCCcc-chhhhhcCCCC-CCCCCeEEEEEecc---------hHHHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 255 KKILVVLDNLWKSL-DLETTIGIPYG-DDHKGCKVLLTTRD---------RSVLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 255 ~~~LlVlDdv~~~~-~~~~~~~~~~~-~~~~~~~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
-+|++||++... +-++ +...+. ....|..||+|++. ++...++....++++++++.++-.+++++.
T Consensus 89 --~~l~iDDi~~~~~~~~~-lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETG-LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCCCCHHH-HHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889996542 1112 111111 12346679998873 344446666789999999999999999998
Q ss_pred cCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 324 ADDDVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
+.... -.-.+++..-|++++.|...++..+...
T Consensus 166 ~~~~~-~~l~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 166 FADRQ-LYVDPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HHHcC-CCCCHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 83321 1122466788888888888776654333
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.1e-06 Score=72.12 Aligned_cols=60 Identities=30% Similarity=0.485 Sum_probs=51.9
Q ss_pred CCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccc-cccccCCCCCCEEEecCCCC
Q 000635 528 PQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLERSTV 591 (1380)
Q Consensus 528 ~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l 591 (1380)
++|++|++.+|.... +|.+.|.++++|++|++++|.++.+ |..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~----i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE----IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE----ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc----cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578888888775543 7788899999999999999999988 56889999999999999975
No 80
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=4e-06 Score=88.02 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhc---CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc
Q 000635 156 AFESRLSTLKSIRNALT---DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF 206 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f 206 (1380)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+++++++........+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 48999999999999993 4556899999999999999999999998876333
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.3e-05 Score=91.67 Aligned_cols=178 Identities=11% Similarity=0.163 Sum_probs=111.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCc-----------------------
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIF----------------------- 206 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----------------------- 206 (1380)
|....+++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++........
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 44567789999999999887776553 578999999999999999999987532111
Q ss_pred cEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCC
Q 000635 207 DAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGD 280 (1380)
Q Consensus 207 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~ 280 (1380)
.-++.+++..... .+.++.+++... .+++-++|+|+++.. ..+..++ ..+..
T Consensus 97 ~Dv~eidaas~~~---------------------vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLL-k~LEe 154 (507)
T PRK06645 97 PDIIEIDAASKTS---------------------VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALL-KTLEE 154 (507)
T ss_pred CcEEEeeccCCCC---------------------HHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHH-HHHhh
Confidence 0122222222222 222333333322 246678999999875 3355532 22333
Q ss_pred CCCCeEEEE-EecchHHHHhh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 281 DHKGCKVLL-TTRDRSVLLSM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 281 ~~~~~~ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
....+.+|+ ||+...+...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+.-+
T Consensus 155 pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 155 PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 334556555 55544444432 234579999999999999999888322111 11345778999999977543
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2e-05 Score=91.33 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=111.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++........... .+....+ ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcH----HHHHHc
Confidence 455678999999999999999877654 68999999999999999999987532211100 0011111 111111
Q ss_pred HhCCCc-----cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEe-cchHHH
Q 000635 230 KLGLTL-----REESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTT-RDRSVL 297 (1380)
Q Consensus 230 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTt-R~~~v~ 297 (1380)
....+. ......+.++.+.+.+. .++.-++|+|+++.. ..+.+++.. +-.......+|++| ....+.
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKt-LEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKT-LEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHH-hhcCCCceEEEeecCChhhcc
Confidence 111000 00111223333433332 246679999999866 345553332 22222344555444 434333
Q ss_pred Hh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 298 LS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 298 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
.. ......+.+.+++.++..+.+.+.+..... .-..++...|++.++|.+.-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHH
Confidence 32 222357999999999999988887632211 11235688999999998854
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=8.4e-06 Score=101.01 Aligned_cols=174 Identities=21% Similarity=0.292 Sum_probs=102.0
Q ss_pred ccccccccchHHHHH---HHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLK---SIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~---~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
|....+|+|++..+. .+.+.+..++.+.+.++|++|+||||+|+.+++... ..|. .+++.. ..+.++ +
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r-- 94 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-R-- 94 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-H--
Confidence 455677999988874 566667677777889999999999999999998765 2341 122110 011111 0
Q ss_pred HHHhCCCccccchHHHHHHHHHHHH-cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEE--EecchH--HHHh-
Q 000635 228 AEKLGLTLREESESRRASSLYERLK-KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLL--TTRDRS--VLLS- 299 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilv--TtR~~~--v~~~- 299 (1380)
+.+....+.+. .+++.+||+||++... ..+.++ .. -..|..+++ ||+++. +...
T Consensus 95 --------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL-~~---lE~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 95 --------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALL-PW---VENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHH-HH---hcCceEEEEEecCCChHhhhhhHh
Confidence 01111111121 1467799999997652 333322 11 123555555 344432 2121
Q ss_pred hCCCceeeCCCCCHHHHHHHHHhhcCC------CccChhhHHHHHHHHHHhCCChHHH
Q 000635 300 MGSKENFPIGVLNEQEAWRLFKLTADD------DVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 300 ~~~~~~~~l~~L~~~~~~~l~~~~~~~------~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
......+.+++++.++...++++.+.. .....-..++...|++.+.|....+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 122457999999999999999876631 1111222456788888888876443
No 84
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.20 E-value=4.4e-05 Score=78.17 Aligned_cols=177 Identities=17% Similarity=0.207 Sum_probs=93.8
Q ss_pred cccccccccchHHHHHHHHHHhc-----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT-----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQ 224 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1380)
.|....+|+|.++.+..+.-.+. .+...-+.+||++|+||||||.-+++..... | .+++...-....++.
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDLA 93 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHHH
Confidence 45677889999998887655443 3446678999999999999999999998843 3 234432211122221
Q ss_pred HHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc---------hhhh-hcCCCCCC----------CCC
Q 000635 225 GEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD---------LETT-IGIPYGDD----------HKG 284 (1380)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~~-~~~~~~~~----------~~~ 284 (1380)
.+...+ +++-+|.+|+++.... .++. +......+ .+-
T Consensus 94 ---------------------~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 ---------------------AILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---------------------HHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred ---------------------HHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 112222 2344667787765410 1110 00000000 112
Q ss_pred eEEEEEecchHHHHhhCCC--ceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHH
Q 000635 285 CKVLLTTRDRSVLLSMGSK--ENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIA 355 (1380)
Q Consensus 285 ~~ilvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 355 (1380)
+-|=.|||...+...+... -..+++..+.+|-.++..+.+..-.. +-.++.+.+|++++.|-|.-..-+-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3355688876555544332 24589999999999999888732211 1123569999999999996544333
No 85
>PRK08727 hypothetical protein; Validated
Probab=98.20 E-value=2.1e-05 Score=84.91 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=100.7
Q ss_pred ccccccchH-HHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHh
Q 000635 153 GYEAFESRL-STLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKL 231 (1380)
Q Consensus 153 ~~~~~~gR~-~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1380)
....|++.. ..+..+...........+.|+|.+|+|||.|+.++++....++ ..+.|+++.+ ....+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~---- 84 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRL---- 84 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhH----
Confidence 344555443 3344333333333335699999999999999999999876442 3566776422 11111
Q ss_pred CCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc---chhhhhcCCCCC-CCCCeEEEEEecch---------HHHH
Q 000635 232 GLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL---DLETTIGIPYGD-DHKGCKVLLTTRDR---------SVLL 298 (1380)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~~~~~~~~~-~~~~~~ilvTtR~~---------~v~~ 298 (1380)
....+.+ .+.-+||+||++... .+...+...+.. ...|..||+|++.. ++..
T Consensus 85 -------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 85 -------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred -------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 1122333 244599999997542 232212111111 22456799999853 2233
Q ss_pred hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 299 SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 299 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
++.....+++++++.++-.+++++++.... -.-.+++..-|++.++|-...+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 444456899999999999999998772211 1112356778888888766554
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=2.8e-06 Score=105.67 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=90.6
Q ss_pred CccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc-cccccccCCCCCCEEEecCCCCCC--cccccCCccccE
Q 000635 529 QLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA-SLPYSIGLLQNLQTLCLERSTVGD--IAIIGKLKNLEV 605 (1380)
Q Consensus 529 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~ 605 (1380)
.++.|+|.++.. .+.+|..+ .++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |+.+++|++|++
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCc---cccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 477888886554 34577764 89999999999999997 789999999999999999999886 788999999999
Q ss_pred EEcccCCCc-cCChhhhcc-ccccEEeccCcccccc
Q 000635 606 LSFLQSDIV-MLPKEIGQL-TKLRLLDLTDCFKLKV 639 (1380)
Q Consensus 606 L~L~~~~l~-~lp~~i~~L-~~L~~L~L~~~~~l~~ 639 (1380)
|+|++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999988 889988764 5778899988764443
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.6e-05 Score=88.10 Aligned_cols=196 Identities=13% Similarity=0.040 Sum_probs=114.2
Q ss_pred cccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEE------EEEcCCCcCHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVA------FSEVSQTPDIKN 222 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~------wv~~~~~~~~~~ 222 (1380)
.|.....++|.++..+.+.+.+..++.+ .+.++|+.|+||+|+|..+++.+-.+....... -+.+... ..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---Ch
Confidence 3556677999999999999998877644 789999999999999999999875322110000 0000000 01
Q ss_pred HHHHHHHHhCCC-------ccc-------cchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCC
Q 000635 223 IQGEIAEKLGLT-------LRE-------ESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDH 282 (1380)
Q Consensus 223 ~~~~i~~~l~~~-------~~~-------~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 282 (1380)
..+.+...-..+ ..+ .-..+.++.+.+.+. .+++.++|+|+++... ....+++ .+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK-~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLK-VLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHH-HHhcCC
Confidence 111111110000 000 011234455555443 2467799999998663 2333222 222223
Q ss_pred CCeEEEEEecchHHH-H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 283 KGCKVLLTTRDRSVL-L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 283 ~~~~ilvTtR~~~v~-~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
.++.+|++|.+.... . .......+.+.+++.++..+++.+....... .....+++.++|.|.....+
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~~-----~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPD-----DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCCH-----HHHHHHHHHcCCCHHHHHHH
Confidence 455677777665322 2 2233468999999999999999886533211 12367899999999865443
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.19 E-value=5.3e-05 Score=88.84 Aligned_cols=181 Identities=13% Similarity=0.180 Sum_probs=111.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC--------------------CccEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN--------------------IFDAV 209 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~ 209 (1380)
|.....++|.++.++.+.+++..++. ..+.++|++|+||||+|+.+++...... +++.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 44566789999999999999976654 4788999999999999999998864221 2332
Q ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCC
Q 000635 210 AFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHK 283 (1380)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~ 283 (1380)
++++........ .+..+.+.+. .+++-++|+|+++.. .....++ ..+.....
T Consensus 89 ~~~~~~~~~~~~---------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll-~~le~~~~ 146 (355)
T TIGR02397 89 IEIDAASNNGVD---------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALL-KTLEEPPE 146 (355)
T ss_pred EEeeccccCCHH---------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHH-HHHhCCcc
Confidence 333322211111 1222222221 145568999998765 2333422 22222334
Q ss_pred CeEEEEEecchH-HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHH
Q 000635 284 GCKVLLTTRDRS-VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIA 355 (1380)
Q Consensus 284 ~~~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 355 (1380)
.+.+|++|.+.. +.. .......+++.+++.++..+++...+..... .-..+.+..+++.++|.|..+....
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 566667765543 222 2223457899999999999999887722111 1113568889999999986654433
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5e-05 Score=89.26 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=111.6
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhc-------------------CCccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKED-------------------NIFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~-------------------~~f~~~~ 210 (1380)
|....+++|.+..++.+...+..++.+ .+.++|+.|+||||+|+.+++..... +.+.-++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 455678999999999999888877655 79999999999999999999865311 1112244
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
.+++++...+.++ +.+.+... .+++-++|+|+++... .... +...+-.....
T Consensus 89 eidaas~~~vddI---------------------R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~Na-LLK~LEePp~~ 146 (491)
T PRK14964 89 EIDAASNTSVDDI---------------------KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNA-LLKTLEEPAPH 146 (491)
T ss_pred EEecccCCCHHHH---------------------HHHHHHHHhccccCCceEEEEeChHhCCHHHHHH-HHHHHhCCCCC
Confidence 5555443333332 22222221 1456689999997652 3444 22223223345
Q ss_pred eEEEEEec-chHHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 285 CKVLLTTR-DRSVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 285 ~~ilvTtR-~~~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
+++|++|. ...+.. .......+++.+++.++..+.+.+.+..... .-..+.++.|++.++|.+..
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 66666554 334433 2233468999999999999999887732211 11234577899999998754
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.8e-05 Score=91.59 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=105.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|.....++|++..++.+.+++..++. +.+.++|+.|+||||+|+.+++........+. .........+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-------~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-------DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHHc
Confidence 45667899999999999999876554 47889999999999999999998753221110 00011111111111
Q ss_pred HhCCCc-----cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEe-cchHHH
Q 000635 230 KLGLTL-----REESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTT-RDRSVL 297 (1380)
Q Consensus 230 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTt-R~~~v~ 297 (1380)
....+. ......+.++.+.+... .+++-++|+|+++.. ..+..++. .+-.....+.+|++| ....+.
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLK-tLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLK-TLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHH-HHHhCCCcEEEEEECCChHhhh
Confidence 100000 00011122233332222 134447999999765 23334222 222222345555544 433333
Q ss_pred H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 298 L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 298 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
. .......+++.+++.++....+...+..... .-..+.+..+++.++|.+.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHH
Confidence 2 2233468999999999999998887622110 0112457889999999664
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=4.5e-05 Score=79.80 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=93.7
Q ss_pred HHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhc--------------------CCccEEEEEEcC-CCcCHHHH
Q 000635 166 SIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKED--------------------NIFDAVAFSEVS-QTPDIKNI 223 (1380)
Q Consensus 166 ~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~-~~~~~~~~ 223 (1380)
.+.+.+..++. ..+.++|+.|+||||+|+.+++..... .+.|.. ++... .....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~--- 78 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKV--- 78 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCH---
Confidence 34455555555 578999999999999999999987542 122222 22211 11111
Q ss_pred HHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HH
Q 000635 224 QGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SV 296 (1380)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v 296 (1380)
+.+..+.+.+. .+.+-++|+||++... ..+. +...+......+.+|++|++. .+
T Consensus 79 ------------------~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~-Ll~~le~~~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 79 ------------------DQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANA-LLKTLEEPPPNTLFILITPSPEKL 139 (188)
T ss_pred ------------------HHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHH-HHHHhcCCCCCeEEEEEECChHhC
Confidence 22222233322 1466789999997653 2333 222333333456677777654 22
Q ss_pred HHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 297 LLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 297 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
... ......+++.+++.++..+.+.+. + . ..+.+..|++.++|.|..
T Consensus 140 ~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 140 LPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 221 122358999999999999999887 2 1 135688999999998853
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.2e-05 Score=90.59 Aligned_cols=181 Identities=13% Similarity=0.183 Sum_probs=109.0
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1380)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++...... .|..++
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 44567899999999999999876554 4678999999999999999998764211 122233
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
++.......+.+ ++.+.+.+. .+++-++|+|+++... .... +...+-.....
T Consensus 92 eidaas~~gvd~---------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~na-LLK~LEepp~~ 149 (546)
T PRK14957 92 EIDAASRTGVEE---------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNA-LLKTLEEPPEY 149 (546)
T ss_pred EeecccccCHHH---------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHH-HHHHHhcCCCC
Confidence 333322222221 222222221 2566799999997652 3333 22222223345
Q ss_pred eEEEE-EecchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH-HHHHH
Q 000635 285 CKVLL-TTRDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI-ALTTI 354 (1380)
Q Consensus 285 ~~ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 354 (1380)
+++|+ ||....+... ......+++.+++.++....+.+.+..... .-..+.+..|++.++|-+. |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555 4443333322 233468999999999998888876522111 1123457789999999664 44443
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.4e-05 Score=92.84 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=109.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCC-------------------ccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNI-------------------FDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 210 (1380)
|....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+..... |--++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 45567899999999999999987664 47899999999999999999997643211 11112
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCccc--hhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSLD--LETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~ 284 (1380)
.++......+ +.++.+++... .+++-++|+|+++.... ...+++ .+-.....
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLK-tLEEPp~~ 149 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLK-TLEEPPEH 149 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHH-HHHhCCCC
Confidence 2332222221 22223332221 24667999999986532 333222 22222345
Q ss_pred eEEEEEecchH-HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 285 CKVLLTTRDRS-VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 285 ~~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
+++|++|.+.. +.. .......+++.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHH
Confidence 66777665432 211 1122346888899999999999887732211 1123567899999999885443
No 94
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=5.5e-05 Score=87.32 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=104.5
Q ss_pred cccccchHHHHHHHHHHhcCCC----------eEEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------
Q 000635 154 YEAFESRLSTLKSIRNALTDPN----------VSIIGVYGMGGIGKTTLAKEVARRAKEDN------------------- 204 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~~~~----------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------- 204 (1380)
...++|.+..++.|.+++..+. ...+.++|++|+|||++|..+++..-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3468899999999999987543 45788999999999999999998764321
Q ss_pred CccEEEEEEcC-CCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCC
Q 000635 205 IFDAVAFSEVS-QTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIP 277 (1380)
Q Consensus 205 ~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~ 277 (1380)
|.| +.++... .... .+.++.+.+... .+++-++|+|+++... ....++. .
T Consensus 84 hpD-~~~i~~~~~~i~---------------------i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk-~ 140 (394)
T PRK07940 84 HPD-VRVVAPEGLSIG---------------------VDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK-A 140 (394)
T ss_pred CCC-EEEeccccccCC---------------------HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH-H
Confidence 222 1122211 1111 122333333332 2455688889998763 2223222 2
Q ss_pred CCCCCCCeEEEEEecch-HHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 278 YGDDHKGCKVLLTTRDR-SVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 278 ~~~~~~~~~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
+-....+..+|++|.+. .+... ......+.+.+++.++..+.+.+..+. . .+.+..+++.++|.|....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCHHHHH
Confidence 22223455566666554 33322 223468999999999999988754431 1 2447789999999996543
No 95
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=4.8e-08 Score=112.38 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=130.4
Q ss_pred ccceeEEEeccCCcccCCCCCC-CCCccEEEeccCCCc------cccccCchhhhhCCCCccEEEecCcccccccccccC
Q 000635 505 KKECYAISVRDSSIHELPEGLK-CPQLQFLTIANSKDS------FLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGL 577 (1380)
Q Consensus 505 ~~~~r~lsl~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~------~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~ 577 (1380)
...+|+|-+.++++..+..... -.+|+.|...+.-.. ...+++-.+. .-..|.+-++++|.+..+.+++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 4578888888888766444332 234555544321100 0001111111 124688889999999988899999
Q ss_pred CCCCCEEEecCCCCCCcccccCCccccEEEcccCCCccCCh-hhhccccccEEeccCccccccccchhhcCCCCCcEEEc
Q 000635 578 LQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPK-EIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYM 656 (1380)
Q Consensus 578 L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l 656 (1380)
+++|+.|||++|++.+.+.+..|.+|++|||++|.+..+|. +...+ +|+.|++++|. ++++-. +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhccch
Confidence 99999999999999998899999999999999999998886 33333 49999999985 777653 889999999999
Q ss_pred cccccceeeeccCccccccChhhhcCCCCCcEEEEEecCCCCCC
Q 000635 657 HNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILP 700 (1380)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 700 (1380)
++|-+. ....+..|..|..|+.|.|.+|.+..-|
T Consensus 262 syNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 262 SYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999765 2344566777788999999998765433
No 96
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=5e-06 Score=93.65 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=19.1
Q ss_pred cccceEecccccccccccCCCCchhhhhhcceeEeeecccccccc
Q 000635 1169 ALIKRLHLVELDDLKHLWKPNSKLEHILQYLEKLFVSYCQSLLIL 1213 (1380)
Q Consensus 1169 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~~ 1213 (1380)
++|+.|.+++|.+|+.++. ..+++|+.|+|++|.++..+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 72 NELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred CCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccc
Confidence 3455555555555555421 11345555555555554443
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.3e-05 Score=92.57 Aligned_cols=178 Identities=13% Similarity=0.190 Sum_probs=109.9
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCC-------------------ccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNI-------------------FDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------f~~~~ 210 (1380)
|....+++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++....... |.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 455678999999999999999866654 6789999999999999999998753221 22234
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~ 284 (1380)
.++......+.+ ++.+.+... .++.-++|+|+|+.. .....+++ .+-.....
T Consensus 92 eidaas~~~v~~---------------------iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk-~LEepp~~ 149 (509)
T PRK14958 92 EVDAASRTKVED---------------------TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLK-TLEEPPSH 149 (509)
T ss_pred EEcccccCCHHH---------------------HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHH-HHhccCCC
Confidence 444333333333 222222221 245668999999865 33444222 22223345
Q ss_pred eEEEEEecch-HHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 285 CKVLLTTRDR-SVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 285 ~~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
+++|++|.+. .+.. .......+++.+++.++....+.+.+...... -..+.+..|++.++|-+.-+
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHH
Confidence 6676665443 2221 12223578899999999888877776221111 11244678888999887543
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.7e-05 Score=93.21 Aligned_cols=195 Identities=14% Similarity=0.152 Sum_probs=111.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|....+++|.+..++.|...+..++. ..+.++|+.|+||||+|+.+++.+.....+.. .....-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHc
Confidence 45567899999999999999886665 35789999999999999999998754211100 00000011111110
Q ss_pred HhC-----CCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecc-hHHH
Q 000635 230 KLG-----LTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRD-RSVL 297 (1380)
Q Consensus 230 ~l~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~-~~v~ 297 (1380)
.-. ++.......+.++.+.+.+. .+++-++|+|+++.. .....+++ .+-......++|++|.+ ..+.
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLK-tLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLK-TLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHH-HHHcCCCCeEEEEecCCccccc
Confidence 000 00000011222333333332 356779999999866 23444222 22222234555555544 3333
Q ss_pred H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 298 L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 298 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
. .......+++.+++.++....+.+....... ....+....|++.++|.+..+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2222468999999999999999877622111 112345778999999988644333
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.09 E-value=5.3e-05 Score=88.26 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=103.4
Q ss_pred ccccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC
Q 000635 151 IKGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT 217 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1380)
......+.|+++.++++.+.+. . ...+-+.|+|++|+|||++|+++++.... .| +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch-
Confidence 3345678999999999988763 1 12456899999999999999999998763 23 22211
Q ss_pred cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------------chhhhhcCCC-CC
Q 000635 218 PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL----------------DLETTIGIPY-GD 280 (1380)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~~~~~~~-~~ 280 (1380)
.++.... ++ ........+++......+.+|++|+++... .+..++...- ..
T Consensus 190 ---~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 11 111223344444444577899999987541 0111111000 01
Q ss_pred CCCCeEEEEEecchHHHH-----hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 281 DHKGCKVLLTTRDRSVLL-----SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 281 ~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
...+.+||.||....... ....+..+.++..+.++..++|+.++......++. ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 234678888887543222 11224578999999999999999877332211111 1456777777764
No 100
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.08 E-value=8.2e-06 Score=87.69 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC--cCHHHHHHHH-----HHHhCCCcccc-chHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT--PDIKNIQGEI-----AEKLGLTLREE-SESRRASS 246 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 246 (1380)
....++|+|++|+|||||++.+++..... +|+.++|+.+.+. .++.++++.+ +.+++...... .....+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999998765 8999999997666 7899999998 44444321110 01111222
Q ss_pred HHHHH-HcCCeEEEEEeCCCCc
Q 000635 247 LYERL-KKEKKILVVLDNLWKS 267 (1380)
Q Consensus 247 l~~~l-~~~~~~LlVlDdv~~~ 267 (1380)
..++. ..+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22322 3479999999999654
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7.6e-05 Score=90.42 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=110.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCc--cEEEEEEcCCCcCHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIF--DAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i 227 (1380)
|....+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+...... .+... .....-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 45567899999999999999987665 567899999999999999998886532110 00000 000001111111
Q ss_pred HHHh-----CCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecc-hH
Q 000635 228 AEKL-----GLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRD-RS 295 (1380)
Q Consensus 228 ~~~l-----~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~-~~ 295 (1380)
...- .++.......+.++.+.+... .++.-++|+|+|+.. ..+..++ ..+-.....+++|++|.+ ..
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLL-KtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAML-KTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHH-HhcccCCCCeEEEEEECCchh
Confidence 0000 000000111223333443332 134568999999876 3344422 233223345566655543 33
Q ss_pred HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 296 VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 296 v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
+.. .......+++.+++.++..+.+.+.+...... -..+.+..|++.++|.+.-+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 322 23334689999999999999998877322111 113457888999998775443
No 102
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=6.9e-07 Score=95.09 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=22.6
Q ss_pred CCCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCC
Q 000635 647 SLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRND 696 (1380)
Q Consensus 647 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 696 (1380)
+-++|+++..++|... +.........++.++.|+.+.+..|++
T Consensus 155 ~~~~Lrv~i~~rNrle-------n~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLE-------NGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred CCcceEEEEeeccccc-------cccHHHHHHHHHhccccceEEEecccc
Confidence 3456666666666543 111122334455566666666665554
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.9e-05 Score=89.26 Aligned_cols=200 Identities=12% Similarity=0.132 Sum_probs=112.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE-cCCCcCHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE-VSQTPDIKNIQGEIA 228 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 228 (1380)
|.....++|.+..++.|..++..++.+ .+.++|++|+||||+|..+++.......++...|.. .......-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 445677899999999999999876654 588999999999999999999885432111111110 000001001111111
Q ss_pred HHhCCC-----ccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEe-cchHH
Q 000635 229 EKLGLT-----LREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTT-RDRSV 296 (1380)
Q Consensus 229 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTt-R~~~v 296 (1380)
..-..+ .......+.+..+.+.+. .+.+-++|+|+++... .+..++ ..+......+.+|++| +...+
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LL-k~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFL-KTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHH-HHHhcCCCCeEEEEEeCChHHh
Confidence 100000 000111233334444442 2466789999998653 444422 2333333456665555 43333
Q ss_pred HHhh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 297 LLSM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 297 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
...+ .....+++.+++.++..+.+...+.... ..-..+.+..|++.++|.+.-+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 3221 1235789999999999988888772211 11123568899999999885443
No 104
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=3.6e-05 Score=83.05 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=93.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|..|+|||.|++++++....+ -..++|+++.+ +... ...+.+.+. +-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~-~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLE-QY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhh-hC-
Confidence 578999999999999999999887633 24567777532 1110 012333343 12
Q ss_pred EEEEEeCCCCc---cchhhhhcCCCCC-CCCCeEEEEEecchH---------HHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 257 ILVVLDNLWKS---LDLETTIGIPYGD-DHKGCKVLLTTRDRS---------VLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 257 ~LlVlDdv~~~---~~~~~~~~~~~~~-~~~~~~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
=+||+||+... ..|+..+...+.. ...|.++|+|++... ...++....++++++++.++-.++++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 27889999643 2443322222211 234567899887532 2223344567899999999999999866
Q ss_pred cCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000635 324 ADDDVENRRLKSIATQVAKACGGLPIALTTIAKAL 358 (1380)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 358 (1380)
+.... -.-.+++..-|++++.|-...+..+-..|
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 62211 11113677888888888776655444433
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=2.7e-05 Score=81.95 Aligned_cols=184 Identities=17% Similarity=0.174 Sum_probs=116.9
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccE-EEEEEcCCCcCHHHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDA-VAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 227 (1380)
..|+....++|.+..+..+...+.....+....+|++|.|||+-|.++++..-..+.|.+ +.-.+++....+.-+-..+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 356677889999999999999998877889999999999999999999999876556654 4445555443322111111
Q ss_pred HHHhCCCccccchHHHHHHHHHHHH-----cCCe-EEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecch-HHHH
Q 000635 228 AEKLGLTLREESESRRASSLYERLK-----KEKK-ILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDR-SVLL 298 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~-----~~~~-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~ 298 (1380)
- ...++..... .-++ -.+|||+++.. +.|.+ ++...-.....++.++.+... .+..
T Consensus 110 k--------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~a-Lrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 110 K--------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAA-LRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred c--------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHH-HHHHHhccccceEEEEEcCChhhCCh
Confidence 0 0000000000 0133 48899999876 67777 554544455566655544433 2222
Q ss_pred hh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 299 SM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 299 ~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
.+ .....+..++|.+++...-++..+..+.-+- ..++.+.|++.++|--
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDL 224 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcH
Confidence 11 1234688999999999998888883322111 1245778888888854
No 106
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=0.00088 Score=82.77 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc---cEEEEEEcCCC---cCHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF---DAVAFSEVSQT---PDIKNIQ 224 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~ 224 (1380)
+.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 34456788999999988888776666789999999999999999998876543322 11234333211 1222221
Q ss_pred HHH---------------HHHhCCCc------------------cccchHHHHHHHHHHHHcCCeEEEEEeCCCCc--cc
Q 000635 225 GEI---------------AEKLGLTL------------------REESESRRASSLYERLKKEKKILVVLDNLWKS--LD 269 (1380)
Q Consensus 225 ~~i---------------~~~l~~~~------------------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~ 269 (1380)
..+ +...+... .+.-+......+.+.+. ++++.++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCccc
Confidence 111 11112110 00111223344445554 56677776655543 23
Q ss_pred hhhhhcCCCCCCCCCeEEEE--EecchHH-HHhh-CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhC
Q 000635 270 LETTIGIPYGDDHKGCKVLL--TTRDRSV-LLSM-GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACG 345 (1380)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 345 (1380)
|+. +...+....+...|++ ||++... ...+ .....+.+.+++.+|.+.++++.+...... -..++.+.|.+...
T Consensus 309 ~~~-ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~ 386 (615)
T TIGR02903 309 PKY-IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTI 386 (615)
T ss_pred chh-hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCC
Confidence 554 5444444444444555 5664421 1111 122467899999999999999877322110 11234444544444
Q ss_pred CChHHHHHHH
Q 000635 346 GLPIALTTIA 355 (1380)
Q Consensus 346 g~Plai~~~~ 355 (1380)
.-+.|+..++
T Consensus 387 ~gRraln~L~ 396 (615)
T TIGR02903 387 EGRKAVNILA 396 (615)
T ss_pred cHHHHHHHHH
Confidence 3345554443
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.9e-05 Score=91.08 Aligned_cols=176 Identities=14% Similarity=0.189 Sum_probs=107.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1380)
|....+++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++...... .|.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 345677899999999999999876654 678999999999999999998874321 111222
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
++..+.... .+.++.+.+... .+++-++|+|+++... ....+++ .+-.....
T Consensus 92 ei~~~~~~~---------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK-~LEepp~~ 149 (527)
T PRK14969 92 EVDAASNTQ---------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLK-TLEEPPEH 149 (527)
T ss_pred EeeccccCC---------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHH-HHhCCCCC
Confidence 333222212 222233333222 2466799999998663 2333222 22222345
Q ss_pred eEEEEEecch-HHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 285 CKVLLTTRDR-SVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 285 ~~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
+.+|++|.+. .+... ......+++.+++.++..+.+.+.+..... ....+.++.|++.++|.+.
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 5666655443 22211 112357899999999999888877622111 1123457889999999775
No 108
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.01 E-value=1.4e-05 Score=89.04 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=63.8
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc--CHHHHHHHHHHHhCCCccccchH------HHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP--DIKNIQGEIAEKLGLTLREESES------RRASS 246 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 246 (1380)
......|+|++|+||||||+++|+....+ +|+.++|+.+.+.. .+.++++.+...+-....+.... ..+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999865 89999999998777 77788888753211111111111 11222
Q ss_pred HHHHHH-cCCeEEEEEeCCCCc
Q 000635 247 LYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 247 l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
..+++. .+++++|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 233332 479999999999654
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.01 E-value=5.1e-05 Score=96.45 Aligned_cols=159 Identities=14% Similarity=0.180 Sum_probs=96.3
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCC---c-cEEEE-EEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNI---F-DAVAF-SEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~---f-~~~~w-v~~~~~~~~~~~~~ 225 (1380)
+....+++||+++++++++.|......-+.++|++|+|||++|+.++++...... + +..+| +++ ..+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~~l-- 249 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------GSL-- 249 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------HHH--
Confidence 3455689999999999999987666667789999999999999999999754321 1 33333 221 111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------chhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL----------DLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
... .... ..-.+.+..+++.+.+.++.+|++|+++... +...++...+. . ..-++|-+|...+
T Consensus 250 --~a~--~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~-g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 --LAG--TKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-S-GKLRCIGSTTYEE 322 (731)
T ss_pred --hhh--cccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-C-CCeEEEEecCHHH
Confidence 100 0000 1223345666776655678999999987331 12232332222 1 1234455444322
Q ss_pred HHH-------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 296 VLL-------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 296 v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
... .....+.+++++++.++..++++...
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 11123579999999999999998655
No 110
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.01 E-value=6.8e-05 Score=95.75 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=95.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc----cEEE-EEEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF----DAVA-FSEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~-wv~~~~~~~~~~~~~ 225 (1380)
+....+++||+++++++++.|......-+.++|++|+||||+|..++++....... +..+ .+..+.-..
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------ 256 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------ 256 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------
Confidence 44567899999999999999987666677899999999999999999987533211 2223 233221000
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc---------chhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKK-EKKILVVLDNLWKSL---------DLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
+... ...-...+..+++.+.+ +++.+|++|+++... +...++...+. ...-++|-||...+
T Consensus 257 ------g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 ------GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAE 327 (852)
T ss_pred ------cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHH
Confidence 0000 01112334555555543 578999999986542 11122222221 12345666665432
Q ss_pred HHH-------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 296 VLL-------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 296 v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
... .....+.+.+++++.++..++++...
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 211 11223589999999999999975444
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00012 Score=89.45 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=107.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCcc----------------EEEEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFD----------------AVAFSE 213 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~----------------~~~wv~ 213 (1380)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++..-.....+ -++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 45567799999999999999986654 4678999999999999999998864321100 011111
Q ss_pred cCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEE
Q 000635 214 VSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKV 287 (1380)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~i 287 (1380)
.... ...+.++.+.+.+. .+++-++|+|+++.. ..+.+++. .+-.....+.+
T Consensus 94 aasn---------------------~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLK-tLEEPP~~tif 151 (725)
T PRK07133 94 AASN---------------------NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLK-TLEEPPKHVIF 151 (725)
T ss_pred cccc---------------------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHH-HhhcCCCceEE
Confidence 1111 11222344444333 246669999999755 23444222 22222234444
Q ss_pred E-EEecchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 288 L-LTTRDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 288 l-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
| +|++...+... ......+++.+++.++....+...+...... ...++++.|++.++|-+.-+
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4 45544444332 2334689999999999998888766221111 11245788999999977533
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=88.16 Aligned_cols=185 Identities=12% Similarity=0.144 Sum_probs=111.4
Q ss_pred ccccccccchHHHHHHHHHHhcCCC-eEEEEEEeCCCchHHHHHHHHHHHhhhcCCcc-------------------EEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPN-VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFD-------------------AVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-------------------~~~ 210 (1380)
|....+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++........+ -++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 4456778999999999999887665 46788999999999999999999875321110 022
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~ 284 (1380)
+++......+. .++.+.+.+. .+++-++|+|+++.. .....++. .+......
T Consensus 92 eId~a~~~~Id---------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk-~LEEP~~~ 149 (624)
T PRK14959 92 EIDGASNRGID---------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLK-TLEEPPAR 149 (624)
T ss_pred EEecccccCHH---------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHH-HhhccCCC
Confidence 33322111121 1222222221 246679999999766 23344222 22222234
Q ss_pred eEEEEEecc-hHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 000635 285 CKVLLTTRD-RSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP-IALTTIAKAL 358 (1380)
Q Consensus 285 ~~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~~~~l 358 (1380)
..+|++|.+ ..+... ......+++.+++.++....+.+.+..... .-..+.+..|++.++|.+ .|+..+...+
T Consensus 150 ~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556665544 333322 222357899999999999998876622111 011345788899999865 5666655443
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00013 Score=88.67 Aligned_cols=197 Identities=12% Similarity=0.141 Sum_probs=113.8
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCcc--EEEEEEcCCCcCHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFD--AVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i 227 (1380)
|....+++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+....... ...+-. ...-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~----cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL----CGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc----CcccHHHHHH
Confidence 456778999999999999999876644 789999999999999999999875321110 000000 0000111112
Q ss_pred HHHhCCCc-----cccchHHHHHHHHHHHHc----CCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEe-cchH
Q 000635 228 AEKLGLTL-----REESESRRASSLYERLKK----EKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTT-RDRS 295 (1380)
Q Consensus 228 ~~~l~~~~-----~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTt-R~~~ 295 (1380)
...-..+. ......+.++.+++.+.. +++-++|+|+++... .... +...+-.-...+++|++| ....
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~na-LLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNA-LLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHH-HHHHHHhCCCCeEEEEEeCChhh
Confidence 11111100 011223334444444431 355689999997663 2333 222232233456666555 3333
Q ss_pred HHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 296 VLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 296 v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
+... ......+++.+++.++....+.+.+..... .-..+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 223468999999999999999887732111 11125678899999998865443
No 114
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=7.3e-07 Score=106.02 Aligned_cols=103 Identities=25% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCCcccccCCccccE
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEV 605 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~ 605 (1380)
.+.++..|++.+|....+. ..+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|.|..+..+..+++|+.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~-----~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIE-----NLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchhhcc-----cchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCccchhhhc
Confidence 4555555555555443322 1124455666666666666555 234455556666666666655555555666666
Q ss_pred EEcccCCCccCChh-hhccccccEEeccCc
Q 000635 606 LSFLQSDIVMLPKE-IGQLTKLRLLDLTDC 634 (1380)
Q Consensus 606 L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 634 (1380)
+++++|.+..++.. ...+.+|+.+.+.+|
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666655555432 355555666665554
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.7e-06 Score=102.98 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=87.9
Q ss_pred hhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCCcccccCCccccEEEcccCCCccCChhhhccccccEEec
Q 000635 552 FTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDL 631 (1380)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 631 (1380)
+..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..|..|+.|++++|.+..++ ++..+++|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 467888999999999998887668889999999999999988888888888999999999888774 3666889999999
Q ss_pred cCccccccccc-hhhcCCCCCcEEEccccccc
Q 000635 632 TDCFKLKVIAT-NVLSSLTRLEALYMHNCYVE 662 (1380)
Q Consensus 632 ~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 662 (1380)
++|. +..+.. . +..+.+|+.+.+.+|.+.
T Consensus 170 ~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 9875 555554 2 367888888888887654
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00024 Score=84.45 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=110.3
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCcc-------------------EEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFD-------------------AVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-------------------~~~ 210 (1380)
|.....++|.+...+.+..++..++.+ +..++|+.|+||||+|+.+++..-.....+ -++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 445677999999999999999876655 668999999999999999998864211110 122
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
.+.......+.+ ++.+.+... .+++-++|+|+++... .... +...+-.....
T Consensus 90 eldaas~~gId~---------------------IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NA-LLK~LEEpp~~ 147 (535)
T PRK08451 90 EMDAASNRGIDD---------------------IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNA-LLKTLEEPPSY 147 (535)
T ss_pred EeccccccCHHH---------------------HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHH-HHHHHhhcCCc
Confidence 333222212222 222222211 1456699999997662 2333 22222222345
Q ss_pred eEEEEEecch-HHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 285 CKVLLTTRDR-SVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 285 ~~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
+++|++|.+. .+.. .......+++.+++.++....+...+..... .-..+.++.|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 6777777653 1111 1122468999999999999998877632111 112356889999999988554443
No 117
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.00022 Score=76.98 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhc---CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCcc----EEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 161 LSTLKSIRNALT---DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFD----AVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 161 ~~~l~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
.+.++.+.+.+. ..+.+-+.|+|.+|.|||++++++++.+.....-+ .|+.|.+...++...++..|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344555655555 33456799999999999999999998875432112 48889999999999999999999998
Q ss_pred CccccchHHHH-HHHHHHHHcCCeEEEEEeCCCCccc--------hhhhhcCCCCCCCCCeEEEEEecchHHHHhh----
Q 000635 234 TLREESESRRA-SSLYERLKKEKKILVVLDNLWKSLD--------LETTIGIPYGDDHKGCKVLLTTRDRSVLLSM---- 300 (1380)
Q Consensus 234 ~~~~~~~~~~~-~~l~~~l~~~~~~LlVlDdv~~~~~--------~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~~---- 300 (1380)
........... ..+...+.+-+--+||+|++.+... .-..++ .+...-.-+-|.+-|+...-+-..
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 87554443333 3344455544667899999977511 111011 122223344566666543222111
Q ss_pred -CCCceeeCCCCCHHH-HHHHHHhh---cCC-CccChhhHHHHHHHHHHhCCChHH
Q 000635 301 -GSKENFPIGVLNEQE-AWRLFKLT---ADD-DVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 301 -~~~~~~~l~~L~~~~-~~~l~~~~---~~~-~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
.-...+.++....++ ...|+... ..- ....-...++++.|.+.++|+.=-
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 112356666665543 44444322 211 111123357899999999998743
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=7.8e-05 Score=88.28 Aligned_cols=167 Identities=10% Similarity=0.109 Sum_probs=104.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|..|+|||+|++++++.......-..++++++ .++...+...++.. ........+.+. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 45889999999999999999998764333344566654 35556665554321 012233333332 34
Q ss_pred EEEEEeCCCCcc---chhhhhcCCCCC-CCCCeEEEEEecch---------HHHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 257 ILVVLDNLWKSL---DLETTIGIPYGD-DHKGCKVLLTTRDR---------SVLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 257 ~LlVlDdv~~~~---~~~~~~~~~~~~-~~~~~~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
-+||+||+.... .+.+.+...+.. ...|..||+|+... .+..++...-++++++++.++-.++++++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 489999997542 222212222211 12344688887643 23334455568899999999999999998
Q ss_pred cCCCcc-ChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 324 ADDDVE-NRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 324 ~~~~~~-~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
+..... ..-.++++.-|++.++|.|..+.-+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 832211 1233577899999999999887665543
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=0.00015 Score=77.32 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=97.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
...+.|+|..|+|||.|.+++++.......-..++++++ .++...++..+... ....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 346889999999999999999999875433335777764 34444444443221 1233444443 4
Q ss_pred eEEEEEeCCCCccc---hhhhhcCCCC-CCCCCeEEEEEecch---------HHHHhhCCCceeeCCCCCHHHHHHHHHh
Q 000635 256 KILVVLDNLWKSLD---LETTIGIPYG-DDHKGCKVLLTTRDR---------SVLLSMGSKENFPIGVLNEQEAWRLFKL 322 (1380)
Q Consensus 256 ~~LlVlDdv~~~~~---~~~~~~~~~~-~~~~~~~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~ 322 (1380)
-=+|++||++.... |+..+...+. ....|.+||+|++.. ....++...-++++.+++.++-.+++++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 44889999976532 2221211111 123466899999643 3344555667899999999999999999
Q ss_pred hcCCCccChhhHHHHHHHHHHhCCChHHHHHHHH
Q 000635 323 TADDDVENRRLKSIATQVAKACGGLPIALTTIAK 356 (1380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 356 (1380)
++...... -.+++++-|++++.+..-.+..+-.
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 88321111 2236677788887776665554443
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=6.6e-05 Score=81.38 Aligned_cols=173 Identities=12% Similarity=0.148 Sum_probs=97.7
Q ss_pred ccccc-ch-HHHHHHHHHHhc-CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHH
Q 000635 154 YEAFE-SR-LSTLKSIRNALT-DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEK 230 (1380)
Q Consensus 154 ~~~~~-gR-~~~l~~l~~~l~-~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1380)
..+|+ |+ +..+..+.++.. ....+.+.|+|.+|+|||+||+.+++.....+ ..+.++++..... .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----
Confidence 34444 44 334455555543 23345789999999999999999999875322 2345555433110 0
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchh-hhhcCCCCC-CCCCe-EEEEEecchHHHH--------h
Q 000635 231 LGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLDLE-TTIGIPYGD-DHKGC-KVLLTTRDRSVLL--------S 299 (1380)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~-~~~~~~~~~-~~~~~-~ilvTtR~~~v~~--------~ 299 (1380)
+ ... ...-+||+||++...... ..+...+.. ...+. .+|+|++...... .
T Consensus 85 ~-----------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 85 F-----------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred H-----------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 011 233478899997553211 102112211 12233 4666666432211 3
Q ss_pred hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHh
Q 000635 300 MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKAL 358 (1380)
Q Consensus 300 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l 358 (1380)
+.....++++++++++-..++.+.+.... ..-.+++.+.+++...|.+..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33346899999999887777776542111 11123567888889999998877666554
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00033 Score=83.49 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=108.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVA 210 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~ 210 (1380)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.++....... .|..++
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 44566789999999999999986654 4567899999999999999998864210 111123
Q ss_pred EEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCC
Q 000635 211 FSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKG 284 (1380)
Q Consensus 211 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~ 284 (1380)
+++.+....+ +.++.+.+... .+++-++|+|+++... ....++ ..+......
T Consensus 92 eidaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLL-k~LEepp~~ 149 (486)
T PRK14953 92 EIDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALL-KTLEEPPPR 149 (486)
T ss_pred EEeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHH-HHHhcCCCC
Confidence 3332221111 11222322222 2466799999997652 333322 222222334
Q ss_pred eEEEEEe-cchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHH
Q 000635 285 CKVLLTT-RDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIA 355 (1380)
Q Consensus 285 ~~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 355 (1380)
..+|++| +...+... ......+++.+++.++....+...+..... ....+++..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555544 43333321 223457999999999999988887622111 1123457788899999776544333
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=60.01 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=22.6
Q ss_pred CccEEEecCcccccccccccCCCCCCEEEecCCCCCC
Q 000635 557 KLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD 593 (1380)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~ 593 (1380)
+|++|++++|.|+.+|..|++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666666666666666666666554
No 123
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00063 Score=76.14 Aligned_cols=195 Identities=11% Similarity=0.094 Sum_probs=118.6
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 153 GYEAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
.....+||+.++..+..++. ....+.+.|.|-+|.|||.+...++.+......=-.++++++-.-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45678999999999999885 34456899999999999999999999887432223457777766566777777777
Q ss_pred HHhCCCcc-ccchHHHHHHHHHHHHcC-CeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEEecch--HHH----H
Q 000635 229 EKLGLTLR-EESESRRASSLYERLKKE-KKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLTTRDR--SVL----L 298 (1380)
Q Consensus 229 ~~l~~~~~-~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvTtR~~--~v~----~ 298 (1380)
..+-.... .....+....+.+...+. ..+|+|+|.++.... -..+.....++.-+++|+|+.--.. +.. .
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 76611111 111233344444445444 478999999876521 1111111223444566665533211 111 1
Q ss_pred hh-----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCC
Q 000635 299 SM-----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGL 347 (1380)
Q Consensus 299 ~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 347 (1380)
.+ .....+..+|.+.++..+++.++............+++-+++++.|.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 11 12357888999999999999999854433333333344444444443
No 124
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.91 E-value=0.00011 Score=85.87 Aligned_cols=175 Identities=18% Similarity=0.265 Sum_probs=102.0
Q ss_pred cccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc
Q 000635 152 KGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP 218 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1380)
.....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++.... .| +.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~~-----i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--CE-----EEeeh--
Confidence 344568899999998888663 1 23457899999999999999999998752 22 22211
Q ss_pred CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chhhhhcCCC---C--CC
Q 000635 219 DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLETTIGIPY---G--DD 281 (1380)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~~---~--~~ 281 (1380)
.++.... .| .....+..+++......+.+|++|+++... .....+...+ . ..
T Consensus 199 --~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111111 11 112233445555544577899999997531 1111011111 1 12
Q ss_pred CCCeEEEEEecchHHHH-hh----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 282 HKGCKVLLTTRDRSVLL-SM----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 282 ~~~~~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
..+..||.||....... .+ .-+..+++++.+.++-.++|+.+........+. ....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 23567888887653322 11 224579999999999999999887432211111 1456667776654
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=7.2e-05 Score=85.90 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=89.2
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
..|.....++|+++..+.+..++..++. .++.++|++|+|||++|+.+++.... .+..++.+. .....+...+
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l 88 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRL 88 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHH
Confidence 3456677899999999999999886654 46667999999999999999987641 133445444 2222111111
Q ss_pred HHHhCCCccccchHHHHHHHHHHH-HcCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecchHHH-H-hhCC
Q 000635 228 AEKLGLTLREESESRRASSLYERL-KKEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDRSVL-L-SMGS 302 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~-~-~~~~ 302 (1380)
. . ..... ..+.+-++|+|+++.. .+....+...+.....++++|+||...... . ....
T Consensus 89 ~-~----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 89 T-R----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred H-H----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1 1 00111 0134568999999765 122222333233334567888888754211 1 1122
Q ss_pred CceeeCCCCCHHHHHHHHHh
Q 000635 303 KENFPIGVLNEQEAWRLFKL 322 (1380)
Q Consensus 303 ~~~~~l~~L~~~~~~~l~~~ 322 (1380)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24677777777777666543
No 126
>PF14516 AAA_35: AAA-like domain
Probab=97.90 E-value=0.00063 Score=77.70 Aligned_cols=201 Identities=15% Similarity=0.194 Sum_probs=119.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-----cCHHHHH---
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-----PDIKNIQ--- 224 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~--- 224 (1380)
+..-.+.|...-+++.+.+.+.+ ..+.|.|+-.+|||+|..++.+..+.. .+. ++++++... .+..+++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 33446788867777887776543 589999999999999999999998754 343 446666532 2445444
Q ss_pred -HHHHHHhCCCccc-------cchHHHHH-HHHHHHHc--CCeEEEEEeCCCCccc-------hhhhhcCCCC-----CC
Q 000635 225 -GEIAEKLGLTLRE-------ESESRRAS-SLYERLKK--EKKILVVLDNLWKSLD-------LETTIGIPYG-----DD 281 (1380)
Q Consensus 225 -~~i~~~l~~~~~~-------~~~~~~~~-~l~~~l~~--~~~~LlVlDdv~~~~~-------~~~~~~~~~~-----~~ 281 (1380)
..+.++++....- ........ .+.+.+.. +++.+|++|+|+..-. +-.+++.... +.
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4455556554210 01111222 22233332 6899999999975521 1111221111 01
Q ss_pred CCCeEEEEEec--chHHHH----hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHH
Q 000635 282 HKGCKVLLTTR--DRSVLL----SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIA 355 (1380)
Q Consensus 282 ~~~~~ilvTtR--~~~v~~----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~ 355 (1380)
-..-++++... ...... .......++|++++.+|...|.++...... . +..++|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-~----~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-Q----EQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-H----HHHHHHHHHHCCCHHHHHHHH
Confidence 11122222221 111111 112235789999999999999887653211 1 228899999999999999999
Q ss_pred HHhhcC
Q 000635 356 KALRKK 361 (1380)
Q Consensus 356 ~~l~~~ 361 (1380)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999765
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00024 Score=87.21 Aligned_cols=177 Identities=14% Similarity=0.178 Sum_probs=109.6
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhh---------------------cCCccE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKE---------------------DNIFDA 208 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~---------------------~~~f~~ 208 (1380)
|.....++|.+...+.|..++..++.. .+.++|+.|+||||+|+.++..... ..+|+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 345677999999999999999876654 6889999999999999999987642 113432
Q ss_pred EEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCC
Q 000635 209 VAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDH 282 (1380)
Q Consensus 209 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 282 (1380)
..++..+...+.++ ..+.+.+. .+++-++|+|+++... .... +...+-...
T Consensus 93 -~~ld~~~~~~vd~I---------------------r~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~na-LLK~LEepp 149 (614)
T PRK14971 93 -HELDAASNNSVDDI---------------------RNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNA-FLKTLEEPP 149 (614)
T ss_pred -EEecccccCCHHHH---------------------HHHHHHHhhCcccCCcEEEEEECcccCCHHHHHH-HHHHHhCCC
Confidence 23333322222222 22222221 1456688999998663 3444 222222223
Q ss_pred CCeEEEE-EecchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 283 KGCKVLL-TTRDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 283 ~~~~ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
..+.+|+ ||+...+... ......+++.+++.++....+.+.+...... -..+.+..|++.++|-..-+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4555555 4444444432 2334689999999999999998877322111 11245788999999977543
No 128
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00034 Score=81.98 Aligned_cols=178 Identities=12% Similarity=0.170 Sum_probs=105.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhc------CCccE-EEEEEcCCCcCHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKED------NIFDA-VAFSEVSQTPDIKN 222 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~------~~f~~-~~wv~~~~~~~~~~ 222 (1380)
|....+++|.+..++.+.+++..+.. +.+.++|++|+||||+|..+++..... ..|.. ++.++.....+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 44567789999999999999986654 488899999999999999998886531 11211 11222111111112
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEec-chH
Q 000635 223 IQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTR-DRS 295 (1380)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR-~~~ 295 (1380)
+..+.+... .+++-++|+|+++... .+..++. .+......+.+|++|. ...
T Consensus 93 ---------------------i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~-~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 93 ---------------------IRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLK-TLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred ---------------------HHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHH-HHhCCCCceEEEEEeCCccc
Confidence 222222211 1355689999997553 2444222 2222223455555553 322
Q ss_pred HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 296 VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 296 v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
+.. .......++..+++.++....+...+..... .-..+++..+++.++|.+..+
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 222 1223457899999999999988877622111 011356888889999876543
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00028 Score=85.91 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=109.7
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE-cCCCcCHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE-VSQTPDIKNIQGEIA 228 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 228 (1380)
|.....++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+++........+.-.|.. +......-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 44567899999999999998877665 4688999999999999999999875422111111110 000111111111111
Q ss_pred HHhCCC-----ccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEe-cchHH
Q 000635 229 EKLGLT-----LREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTT-RDRSV 296 (1380)
Q Consensus 229 ~~l~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTt-R~~~v 296 (1380)
..-..+ .......+.+..+.+.+. .+.+-++|+|+++... .... +...+-.-...+.+|++| +...+
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~na-LLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNA-FLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHH-HHHHHhCCCCCeEEEEEeCChhhh
Confidence 100000 001111233444444442 2456689999997663 2333 222222222345555444 43343
Q ss_pred HH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 297 LL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 297 ~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
.. .......+++.+++.++....+.+.+..... .-..+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHH
Confidence 33 2334568999999999998888876622110 0113458889999999664
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.88 E-value=0.00017 Score=92.98 Aligned_cols=156 Identities=13% Similarity=0.189 Sum_probs=95.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc----cEEEE-EEcCCCcCHHHHHHHH
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF----DAVAF-SEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~w-v~~~~~~~~~~~~~~i 227 (1380)
...+++||++++++++++|......-+.++|++|+|||++|..++.+....... +..+| +++ ..+
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~------~~l---- 246 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI------GLL---- 246 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH------HHH----
Confidence 346789999999999999986555567899999999999999999987532211 23344 221 111
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc---------chhhhhcCCCCCCCCCeEEEEEecchHHHH
Q 000635 228 AEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL---------DLETTIGIPYGDDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~ 298 (1380)
.. |....+ .-.+.+..+++.+.+.++.+|++|+++... +...++...+. . ..-++|.+|...+...
T Consensus 247 ~a--g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-r-g~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 247 LA--GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-R-GELQCIGATTLDEYRK 321 (821)
T ss_pred hc--cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-C-CCcEEEEeCCHHHHHH
Confidence 10 112111 223456667777765678999999986331 22232222221 1 2245566555443321
Q ss_pred -------hhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 299 -------SMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 299 -------~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
.......++++..+.++...+++..
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122357888999999988887643
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00036 Score=82.70 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=106.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC---------------------CccE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN---------------------IFDA 208 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~ 208 (1380)
|.....++|.+..++.+.+++..++. ..+.++|++|+||||+|+.+++...... +++
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34567789999999999999986665 5688999999999999999999864321 122
Q ss_pred EEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCC
Q 000635 209 VAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDH 282 (1380)
Q Consensus 209 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 282 (1380)
++++.......+.+ +..+.+.+. .+.+-++|+|+++... .... +...+-...
T Consensus 92 ~~~i~g~~~~gid~---------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~-LLk~lEep~ 149 (451)
T PRK06305 92 VLEIDGASHRGIED---------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNS-LLKTLEEPP 149 (451)
T ss_pred eEEeeccccCCHHH---------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHH-HHHHhhcCC
Confidence 12222111111111 112222111 2466789999987552 2333 222222223
Q ss_pred CCeEEEEEecc-hHHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 283 KGCKVLLTTRD-RSVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 283 ~~~~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
..+.+|++|.. ..+.. .......+++.+++.++....+...+..... .-..+.++.|++.++|.+.-
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 35566666643 22222 1223457999999999999888877622111 11234688899999997643
No 132
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.86 E-value=9.1e-05 Score=74.22 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=74.8
Q ss_pred ccccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
..|....++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+-....-+++.-.++|+...+.-+...|-
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 34556678999999999998888889999999999999999999999999987544556777777777666554444431
Q ss_pred HHhCCCccccchHHHHHHHHHH--HHcCCeEEEEEeCCCCc
Q 000635 229 EKLGLTLREESESRRASSLYER--LKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~--l~~~~~~LlVlDdv~~~ 267 (1380)
. + ..++ +-.++.-.+|||.+++.
T Consensus 101 ~-F---------------AQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 101 M-F---------------AQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred H-H---------------HHhhccCCCCceeEEEeeccchh
Confidence 1 0 0011 11256668899999876
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00051 Score=83.12 Aligned_cols=181 Identities=14% Similarity=0.151 Sum_probs=109.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcCCcc---------------------E
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDNIFD---------------------A 208 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~---------------------~ 208 (1380)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+......+ -
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 445678999999999999999876654 578999999999999999998865321110 1
Q ss_pred EEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCC
Q 000635 209 VAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDH 282 (1380)
Q Consensus 209 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~ 282 (1380)
++.++.+.... .+.++.+.+... .+++-++|+|+++.. .....+ ...+-...
T Consensus 89 vieidaas~~g---------------------vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NAL-LK~LEEpp 146 (584)
T PRK14952 89 VVELDAASHGG---------------------VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNAL-LKIVEEPP 146 (584)
T ss_pred EEEeccccccC---------------------HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHH-HHHHhcCC
Confidence 22222222111 222233333222 245668999999765 333342 22222223
Q ss_pred CCeEEEEEe-cchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH-HHHHH
Q 000635 283 KGCKVLLTT-RDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI-ALTTI 354 (1380)
Q Consensus 283 ~~~~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 354 (1380)
..+.+|++| ....+... ......+++.+++.++..+.+.+.+..... .-..+.+..|++..+|-+. |+..+
T Consensus 147 ~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 355555544 44443332 233468999999999999888876622111 1112456788899999774 33333
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00026 Score=87.28 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=113.3
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++.+....... -....+.....+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 44567899999999999998876654 4678999999999999999998875221100 0001111222333322
Q ss_pred HhCCCcc-----ccchHHHHHHHHHHHHc----CCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecch-HHH
Q 000635 230 KLGLTLR-----EESESRRASSLYERLKK----EKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDR-SVL 297 (1380)
Q Consensus 230 ~l~~~~~-----~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~ 297 (1380)
....+.. .....+.++.+.+.+.. +++-++|+|+++.. .....++. .+......+.+|++|.+. .+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk-~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLK-TLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHH-HHhcCCCCeEEEEEeCChhhhh
Confidence 2211110 11122333444443331 45679999999765 33444222 222223456666655432 332
Q ss_pred H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 298 L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 298 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
. .......+++.+++.++....+.+.+...... -..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 12234578899999999998888876322111 11356889999999988654433
No 135
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=3.3e-06 Score=90.09 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=102.5
Q ss_pred ceeEEEeccCCccc--CCCC----CCCCCccEEEeccCCCccccccCc---------hhhhhCCCCccEEEecCccccc-
Q 000635 507 ECYAISVRDSSIHE--LPEG----LKCPQLQFLTIANSKDSFLEIDVP---------EDFFTGMRKLRVVHFSGMRLAS- 570 (1380)
Q Consensus 507 ~~r~lsl~~~~~~~--l~~~----~~~~~Lr~L~l~~~~~~~~~~~lp---------~~~~~~l~~Lr~L~L~~~~i~~- 570 (1380)
+++.+++++|.+.. ++.. ..+..|+.|.+.+|......+..- ......-..|||+..++|++..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 46667777776521 2211 146677777777665432221110 0111334567777777777653
Q ss_pred ----ccccccCCCCCCEEEecCCCCCCc------ccccCCccccEEEcccCCCc-----cCChhhhccccccEEeccCcc
Q 000635 571 ----LPYSIGLLQNLQTLCLERSTVGDI------AIIGKLKNLEVLSFLQSDIV-----MLPKEIGQLTKLRLLDLTDCF 635 (1380)
Q Consensus 571 ----lp~~i~~L~~L~~L~L~~~~l~~~------~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~ 635 (1380)
+...|...+.|+.+.+++|.|... ..+..+++|++|||+.|-++ .+-..+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 234455667777777777776541 45667777777777777554 223345566677777777773
Q ss_pred ccccccc-----hhhcCCCCCcEEEccccccceeeeccCccccccChhhhcCCCCCcEEEEEecCC
Q 000635 636 KLKVIAT-----NVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRND 696 (1380)
Q Consensus 636 ~l~~~p~-----~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 696 (1380)
++.-.. ..-...++|+.|.+.+|.+..+ ........+...+.|..|+|++|..
T Consensus 253 -l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d-------a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKESAPSLEVLELAGNEITRD-------AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -cccccHHHHHHHHhccCCCCceeccCcchhHHH-------HHHHHHHHHhcchhhHHhcCCcccc
Confidence 332211 1112356777777777766511 1122233445567777777777765
No 136
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00029 Score=88.81 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=108.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcC----------------------Ccc
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDN----------------------IFD 207 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~----------------------~f~ 207 (1380)
+.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++.+.... ++|
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 445677999999999999999876654 678999999999999999999875321 111
Q ss_pred EEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCC
Q 000635 208 AVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDD 281 (1380)
Q Consensus 208 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~ 281 (1380)
+++++......+ +.++.+.+.+. .++.-++|||+++.. ..... +...+-.-
T Consensus 91 -v~eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~Na-LLK~LEEp 147 (824)
T PRK07764 91 -VTEIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNA-LLKIVEEP 147 (824)
T ss_pred -EEEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHH-HHHHHhCC
Confidence 223332221122 22222322221 245668899999866 23333 22233223
Q ss_pred CCCeEEEEEecc-hHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 282 HKGCKVLLTTRD-RSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 282 ~~~~~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
...+.+|++|.+ ..+... ......|++..++.++..+++.+........ ...+.+..|++.++|.+..
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHH
Confidence 345566655543 334332 2335689999999999998888776221111 1124567889999998843
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.0005 Score=84.40 Aligned_cols=197 Identities=15% Similarity=0.130 Sum_probs=112.3
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
+.....++|.++.++.|..++..++. +.+.++|+.|+||||+|+.+++.+....... .. ......-+..+.+..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAA 86 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhc
Confidence 44567789999999999999886653 5788999999999999999999975321110 00 001111222233322
Q ss_pred HhCCCc-----cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HHH
Q 000635 230 KLGLTL-----REESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SVL 297 (1380)
Q Consensus 230 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~ 297 (1380)
....+. ......+.++.+++... .+++-++|+|+++... ....++ ..+-.....+.+|++|.+. .+.
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLL-K~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALL-KTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHH-HHHhcCCcCeEEEEEeCChhhhh
Confidence 211111 01122233444444432 1456689999998652 344422 2222222345555555443 222
Q ss_pred H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 298 L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 298 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
. .......+++.+++.++....+.+.+...... -..+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22234578888999999888887766321111 11245788999999988654433
No 138
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=7.4e-07 Score=102.90 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=83.0
Q ss_pred hhhhCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCCccccc--CCccccEEEcccCCCccCChhhhcccccc
Q 000635 550 DFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIG--KLKNLEVLSFLQSDIVMLPKEIGQLTKLR 627 (1380)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~--~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 627 (1380)
..+.-++.|+.|||++|.+++.. .+..|.+|++|||++|.+..++.++ .++ |+.|.+++|.++.+ .+|.+|.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhh
Confidence 33466788999999999998775 7888899999999999988743333 334 99999999988877 5688999999
Q ss_pred EEeccCcccccccc-chhhcCCCCCcEEEccccccc
Q 000635 628 LLDLTDCFKLKVIA-TNVLSSLTRLEALYMHNCYVE 662 (1380)
Q Consensus 628 ~L~L~~~~~l~~~p-~~~l~~L~~L~~L~l~~~~~~ 662 (1380)
.||+++|- +.... -.-++.|..|..|+|.+|.+.
T Consensus 258 ~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99998874 33221 122677888889999988764
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.80 E-value=0.0002 Score=79.10 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=79.0
Q ss_pred ccccchHHHHHHHHH---Hhc------------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 155 EAFESRLSTLKSIRN---ALT------------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~---~l~------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
..++|.+..++++.+ |.. .+...-+.++|++|+||||+|+.+++.....+......++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA-- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH--
Confidence 346777666555543 321 123456889999999999999999988643221111122332221
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------chhhhhcCCCCCCCCCeEEEE
Q 000635 220 IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL----------DLETTIGIPYGDDHKGCKVLL 289 (1380)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~~~~~~~~~~~~~~~ilv 289 (1380)
++... .++ .. ......+++.. ..-+|++|+++... ..+. +...+........+++
T Consensus 84 --~l~~~---~~g-----~~-~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~-Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 84 --DLVGE---YIG-----HT-AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDT-LVKGMEDNRNEFVLIL 148 (261)
T ss_pred --Hhhhh---hcc-----ch-HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHH-HHHHHhccCCCEEEEe
Confidence 11111 111 11 11122233222 23489999997531 2222 2122222233345555
Q ss_pred EecchHHHH--------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 290 TTRDRSVLL--------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 290 TtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
++...+... .-.....+.+++++.+|-.+++++.+
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 554332211 11113468899999999999998777
No 140
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00087 Score=72.54 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=115.5
Q ss_pred cccccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
|...+..+-|-++.+++|.+... + ..++=|.++|++|+|||-||++++++.... |+.+..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEecc
Confidence 44556677888888888888764 1 235678999999999999999999998743 333332
Q ss_pred CcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chh----hhhcC--CC
Q 000635 217 TPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLE----TTIGI--PY 278 (1380)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~----~~~~~--~~ 278 (1380)
. ++.+.. +| ......+.+++.-+++.+..|.+|.++... +.+ +++.. -|
T Consensus 219 S----ElVqKY---iG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 S----ELVQKY---IG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred H----HHHHHH---hc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 2 222221 22 123456677777777899999999986431 011 11111 11
Q ss_pred CCCCCCeEEEEEecchHHHH-----hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh----H
Q 000635 279 GDDHKGCKVLLTTRDRSVLL-----SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP----I 349 (1380)
Q Consensus 279 ~~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----l 349 (1380)
+.....|||..|...++.+ .-.-++.|+++.-+.+.-.++|+-++....-.++.. .+.+++.+.|.- .
T Consensus 286 -D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd--~e~la~~~~g~sGAdlk 362 (406)
T COG1222 286 -DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD--LELLARLTEGFSGADLK 362 (406)
T ss_pred -CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC--HHHHHHhcCCCchHHHH
Confidence 2234679999887665443 223356888886677777778877774332222111 456667777665 4
Q ss_pred HHHHHHHHhh
Q 000635 350 ALTTIAKALR 359 (1380)
Q Consensus 350 ai~~~~~~l~ 359 (1380)
||.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4666666653
No 141
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.75 E-value=9.3e-05 Score=83.17 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=64.0
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC--cCHHHHHHHHHHH-----hCCCcccc-chHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT--PDIKNIQGEIAEK-----LGLTLREE-SESRRASS 246 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~-----l~~~~~~~-~~~~~~~~ 246 (1380)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+... ++...... .....+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34689999999999999999999998754 8999999998865 6899999998433 22211100 01111222
Q ss_pred HHHHH-HcCCeEEEEEeCCCCc
Q 000635 247 LYERL-KKEKKILVVLDNLWKS 267 (1380)
Q Consensus 247 l~~~l-~~~~~~LlVlDdv~~~ 267 (1380)
..+++ .++++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22233 3479999999999755
No 142
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.75 E-value=9.3e-05 Score=84.70 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=74.2
Q ss_pred cccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 154 YEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
....++.++.++.+...+... +.|.++|++|+|||++|+++++.......|+.+.||+++...+..++...+.- .+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCC
Confidence 345677888899999988754 46888999999999999999999876667889999999988887776543210 011
Q ss_pred CccccchHHHHHHHHHHHHc--CCeEEEEEeCCCCc
Q 000635 234 TLREESESRRASSLYERLKK--EKKILVVLDNLWKS 267 (1380)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~ 267 (1380)
... ........+.+...+ +++++||+|++...
T Consensus 251 gy~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeE--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 110 001111222222222 47899999998654
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00093 Score=81.11 Aligned_cols=178 Identities=12% Similarity=0.166 Sum_probs=109.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcC--------------------CccEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDN--------------------IFDAV 209 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~ 209 (1380)
|.....++|.+..++.+..++..++.+ .+.++|+.|+||||+|+.+++..-... +++ +
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-V 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-e
Confidence 445678999999999999999866544 688999999999999999999875321 122 1
Q ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCC
Q 000635 210 AFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHK 283 (1380)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 283 (1380)
+++...... ..+.+..+.+.+. .+++-++|+|+++... .+..++ ..+-....
T Consensus 91 ~~idgas~~---------------------~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLL-K~LEepp~ 148 (563)
T PRK06647 91 IEIDGASNT---------------------SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALL-KTIEEPPP 148 (563)
T ss_pred EEecCcccC---------------------CHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHH-HhhccCCC
Confidence 122211111 1222333332222 2466689999997663 344422 23333334
Q ss_pred CeEEEEEecc-hHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 284 GCKVLLTTRD-RSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 284 ~~~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
.+.+|++|.. ..+... ......++..+++.++..+.+.+.+..... .-..+.+..|++.++|.+..+.
T Consensus 149 ~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 149 YIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 5666665543 333222 222457899999999998888877622111 1123567789999999875443
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.72 E-value=0.00048 Score=81.49 Aligned_cols=163 Identities=18% Similarity=0.229 Sum_probs=94.7
Q ss_pred cccccccccchHHHHHHHHHHhc-------------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCC---ccEEEEEE
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT-------------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNI---FDAVAFSE 213 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~ 213 (1380)
|......+.|.+..++++.+.+. -...+-+.++|++|+|||++|+++++....... .....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 34455668889999888887753 122456899999999999999999999763211 12344555
Q ss_pred cCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc---------ch-----hhhhc
Q 000635 214 VSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL---------DL-----ETTIG 275 (1380)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~---------~~-----~~~~~ 275 (1380)
+.... ++... .+ . ....+..+++... .+++++|+||+++... +. .. +.
T Consensus 257 v~~~e----Ll~ky---vG-----e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~-LL 322 (512)
T TIGR03689 257 IKGPE----LLNKY---VG-----E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ-LL 322 (512)
T ss_pred ccchh----hcccc---cc-----h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH-HH
Confidence 44321 11100 00 0 1112233333332 2578999999997431 11 11 11
Q ss_pred CCCC--CCCCCeEEEEEecchHHHH-hh----CCCceeeCCCCCHHHHHHHHHhhcCC
Q 000635 276 IPYG--DDHKGCKVLLTTRDRSVLL-SM----GSKENFPIGVLNEQEAWRLFKLTADD 326 (1380)
Q Consensus 276 ~~~~--~~~~~~~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~ 326 (1380)
..+. ....+..||.||...+..+ .+ .-+..++++..+.++..++|+.+...
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1111 1123455666776553322 11 22457999999999999999998744
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00091 Score=81.64 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=107.4
Q ss_pred ccccccccchHHHHHHHHHHhcCCC-eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPN-VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|.....++|.+...+.+..++..++ ...+.++|+.|+||||+|+.+++..-.....+. .+.+.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 4556789999999999999997655 456788999999999999999988643211000 00011111111111
Q ss_pred HhCCCc-----cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEe-cchHHH
Q 000635 230 KLGLTL-----REESESRRASSLYERLK----KEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTT-RDRSVL 297 (1380)
Q Consensus 230 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTt-R~~~v~ 297 (1380)
....+. ......+.++.+.+... .++.-++|+|+++.. ..+..++. .+-.......+|++| ....+.
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLK-tLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLK-TLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHH-HhcCCCCCeEEEEEeCChhhCc
Confidence 100000 00011223333433332 246678899999865 33444332 222222344555544 433332
Q ss_pred Hh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 298 LS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 298 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
.. ......++..+++.++....+...+...... -..+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 22 2234578899999999998888777221111 11245778888888877543
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.7e-05 Score=96.19 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=57.4
Q ss_pred ccceeEEEeccCCcccCCCC------CCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCC
Q 000635 505 KKECYAISVRDSSIHELPEG------LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLL 578 (1380)
Q Consensus 505 ~~~~r~lsl~~~~~~~l~~~------~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L 578 (1380)
.+++++|++.+... +... .-+|.|++|.+.+-.... +-....+.++++|+.||+|+++++.+ ..+++|
T Consensus 121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 35677777766332 1111 146777777766433211 01123455666677777777666666 566666
Q ss_pred CCCCEEEecCCCCCC---cccccCCccccEEEcccC
Q 000635 579 QNLQTLCLERSTVGD---IAIIGKLKNLEVLSFLQS 611 (1380)
Q Consensus 579 ~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~ 611 (1380)
+||++|.+++=.+.. +..+.+|++|++||+|..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 666666666655543 455666666666666665
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.00062 Score=80.69 Aligned_cols=180 Identities=11% Similarity=0.134 Sum_probs=104.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
.-+.|+|++|+|||+||+++++.......-..++|+++ .++...+...+... . .....+.+. ...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHH-hcC
Confidence 45899999999999999999999864322235777765 34455555444311 1 122233332 244
Q ss_pred EEEEEeCCCCcc---ch-hhhhcCCCC-CCCCCeEEEEEec-chHH--------HHhhCCCceeeCCCCCHHHHHHHHHh
Q 000635 257 ILVVLDNLWKSL---DL-ETTIGIPYG-DDHKGCKVLLTTR-DRSV--------LLSMGSKENFPIGVLNEQEAWRLFKL 322 (1380)
Q Consensus 257 ~LlVlDdv~~~~---~~-~~~~~~~~~-~~~~~~~ilvTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~l~~~ 322 (1380)
-+||+||++... .+ +.++. .+. ....|..||+||. .+.- ..++...-++++++.+.++-.+++++
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~-~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHH-HHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 589999997541 11 12111 111 1123446888875 3321 11334455889999999999999998
Q ss_pred hcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHh------hcC--ChhHHHHHHHHh
Q 000635 323 TADDDVENRRLKSIATQVAKACGGLPIALTTIAKAL------RKK--SVPEWENALQEL 373 (1380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~--~~~~w~~~l~~l 373 (1380)
.+.... -.-.++++.-|++.+.|....+.-+-..+ .++ +.+..++++..+
T Consensus 275 ~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 883221 11124678888888888765544333222 122 556666666654
No 148
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.3e-05 Score=56.10 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=15.8
Q ss_pred cccEEEcccCCCccCChhhhccccccEEeccCc
Q 000635 602 NLEVLSFLQSDIVMLPKEIGQLTKLRLLDLTDC 634 (1380)
Q Consensus 602 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 634 (1380)
+|++|++++|+++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 445555555555555444555555555555554
No 149
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.7e-05 Score=97.92 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=109.4
Q ss_pred CCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccc--cccccccCCCCCCEEEecCCCCCCcccccCCcccc
Q 000635 527 CPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLA--SLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLE 604 (1380)
Q Consensus 527 ~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~ 604 (1380)
-.+|+.|++.+...- ....|..+-.-++.||.|.+++-.+. .+-.-..++++|+.||+|++.++.+..+++|++|+
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHH
Confidence 458999999875443 23477777788999999999997764 33344557899999999999999999999999999
Q ss_pred EEEcccCCCccCC--hhhhccccccEEeccCccccccc--cc---hhhcCCCCCcEEEccccccceeeeccCccccccCh
Q 000635 605 VLSFLQSDIVMLP--KEIGQLTKLRLLDLTDCFKLKVI--AT---NVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASL 677 (1380)
Q Consensus 605 ~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~l~~~--p~---~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 677 (1380)
+|.+++-.+..-+ ..+-+|++|++||+|.......- .. ..-..|++|+.|+.++..+. ....-
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~----------~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN----------EEILE 268 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh----------HHHHH
Confidence 9999886666433 36789999999999975432221 11 11234899999999987654 11222
Q ss_pred hhhcCCCCCcEEE
Q 000635 678 DEFLHLPRLTTLE 690 (1380)
Q Consensus 678 ~~l~~l~~L~~L~ 690 (1380)
.-+..+++|+...
T Consensus 269 ~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 269 ELLNSHPNLQQIA 281 (699)
T ss_pred HHHHhCccHhhhh
Confidence 3345566666654
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.63 E-value=0.00067 Score=78.70 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=101.5
Q ss_pred cccccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
|.....++.|-+..++++.+.+. . ...+-|.++|++|+|||++|+++++.... .| +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f---i~i~~-- 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF---IRVVG-- 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEeh--
Confidence 34455668888888877776653 1 23567999999999999999999998652 22 22221
Q ss_pred CcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chhhhhcCC---CC--
Q 000635 217 TPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLETTIGIP---YG-- 279 (1380)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~---~~-- 279 (1380)
..+... .++ .....+..+++......+.+|++|+++... .....+... +.
T Consensus 213 ----s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 111 112234455555555688999999976421 011101111 11
Q ss_pred CCCCCeEEEEEecchHHHH-h-h---CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 280 DDHKGCKVLLTTRDRSVLL-S-M---GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 280 ~~~~~~~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
....+..||+||...+..+ . . .-+..++++..+.++...+|+.........++. -..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 1234667888887654433 1 1 234578999999999888888666322211111 1446666666654
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.00069 Score=87.10 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=94.0
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc----c-EEEEEEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF----D-AVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~ 225 (1380)
+....+++||+++++++++.|......-+.++|++|+|||++|..++.+....... . .+++++++.-. .
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~------a 247 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV------A 247 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh------h
Confidence 34567799999999999999986666678899999999999999999987532211 2 23333332210 0
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc---------chhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKK-EKKILVVLDNLWKSL---------DLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
+....+ .-...+..+++.+.+ +++.+|++|+++... +...++...+ .. ..-++|-||...+
T Consensus 248 ------g~~~~g-~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l-~~-g~l~~IgaTt~~e 318 (857)
T PRK10865 248 ------GAKYRG-EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDE 318 (857)
T ss_pred ------ccchhh-hhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh-hc-CCCeEEEcCCCHH
Confidence 001111 112334555555533 578999999987542 1233232222 11 2335555555443
Q ss_pred HHH-------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 296 VLL-------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 296 v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
... .....+.+.+...+.++...+++...
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 211 11122356777778899888886554
No 152
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00033 Score=76.18 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=104.8
Q ss_pred ccccchHHHHHHHHHHhcCCC--e-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHh
Q 000635 155 EAFESRLSTLKSIRNALTDPN--V-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKL 231 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~~~~--~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1380)
..|.+|+..++.+...+.+.. . ..|.|+|-+|+|||.+.+++.+.... ..+|+++-+.++.+.++..|+.++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 457899999999999887443 2 35689999999999999999998843 258999999999999999999998
Q ss_pred C-CCccccchH---HHHHHHHHHHH-------cCCeEEEEEeCCCCccchhhhh-----cCCCCCCCCCeEEEEEecch-
Q 000635 232 G-LTLREESES---RRASSLYERLK-------KEKKILVVLDNLWKSLDLETTI-----GIPYGDDHKGCKVLLTTRDR- 294 (1380)
Q Consensus 232 ~-~~~~~~~~~---~~~~~l~~~l~-------~~~~~LlVlDdv~~~~~~~~~~-----~~~~~~~~~~~~ilvTtR~~- 294 (1380)
+ .+.++.... +........+. .++.++||+||++...+.++.+ +.+-....+.. +|+++-..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 6 222221111 22222222221 1468999999998775544411 11111122333 34444322
Q ss_pred -HHHH-hhCCC--ceeeCCCCCHHHHHHHHHhhc
Q 000635 295 -SVLL-SMGSK--ENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 295 -~v~~-~~~~~--~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
.... .++.. .++..+.-+.+|...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1111 12332 356778888899888887554
No 153
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.61 E-value=0.00045 Score=81.96 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=94.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|++|+|||+|++++++....+..-..++++++. ++...+...+... ......+.+. ..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 468899999999999999999998754222346677542 3334444443211 1222333343 23
Q ss_pred EEEEEeCCCCccc---hhhhhcCCCC-CCCCCeEEEEEecch-H--------HHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 257 ILVVLDNLWKSLD---LETTIGIPYG-DDHKGCKVLLTTRDR-S--------VLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 257 ~LlVlDdv~~~~~---~~~~~~~~~~-~~~~~~~ilvTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
-+||+||++.... +...+...+. ....+..+|+|+... . +..++.....+.+++.+.++-..++++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975421 1110111111 012345678877642 1 2223333457899999999999999988
Q ss_pred cCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 324 ADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
+..... .-.++++..|++.+.|....+.-
T Consensus 281 ~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 281 AEEEGL-ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 833211 11246688888888887765443
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.61 E-value=0.00064 Score=87.90 Aligned_cols=159 Identities=12% Similarity=0.125 Sum_probs=94.7
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc----cE-EEEEEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF----DA-VAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~-~~wv~~~~~~~~~~~~~ 225 (1380)
+....+++||++++++++..|......-+.++|++|+|||++|..++++......+ .. ++.++++ .+.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~- 241 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI- 241 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh-
Confidence 33456799999999999999976665677799999999999999999987532211 22 2333321 111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHc-CCeEEEEEeCCCCcc---------chhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKK-EKKILVVLDNLWKSL---------DLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
. +....+ .....+..+++.+.+ +++.+|++|+++... +...++... ... ..-++|-+|...+
T Consensus 242 ---a--~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~-l~~-g~i~~IgaTt~~e 313 (852)
T TIGR03346 242 ---A--GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA-LAR-GELHCIGATTLDE 313 (852)
T ss_pred ---h--cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh-hhc-CceEEEEeCcHHH
Confidence 0 001111 122345556666543 468999999987542 122222222 212 2234555555443
Q ss_pred HHH-------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 296 VLL-------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 296 v~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
... .......+.++..+.++...+++...
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 311 11223568899999999999887654
No 155
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.60 E-value=3.4e-06 Score=104.13 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=23.5
Q ss_pred cceeeeccCCCcccccCCCccccCCCccEEEEeccCCccc
Q 000635 1284 LKSISLVDLDSLTSFCSANYTFNFPSLQDLEVIGCPKMTI 1323 (1380)
Q Consensus 1284 L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~Cp~l~~ 1323 (1380)
++.|.++.|...+.-........+..+..+++.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 6777777776665544332111156677777777777653
No 156
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.60 E-value=0.00057 Score=79.75 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=100.7
Q ss_pred cccccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
|.....++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+++++.... .| +.+..+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f---i~V~~se 252 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF---LRVVGSE 252 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE---EEEecch
Confidence 34455667888888888887663 1 23457889999999999999999998752 23 2222111
Q ss_pred CcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------ch----hhhhcCCCC-
Q 000635 217 TPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DL----ETTIGIPYG- 279 (1380)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~----~~~~~~~~~- 279 (1380)
+... .++ .....+..+++......+.+|+||+++... .. ..++.. +.
T Consensus 253 ------L~~k---~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~-Ldg 316 (438)
T PTZ00361 253 ------LIQK---YLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ-LDG 316 (438)
T ss_pred ------hhhh---hcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH-Hhh
Confidence 1111 011 111224445555545678899999975321 00 010100 00
Q ss_pred -CCCCCeEEEEEecchHHHHh-h----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 280 -DDHKGCKVLLTTRDRSVLLS-M----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 280 -~~~~~~~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
....+.+||+||...+.... + ..+..++++..+.++..++|+.+.......++. ....++..+.|.-
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 12345678888886644442 1 224589999999999999999877332211110 1345555555544
No 157
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=2.7e-06 Score=88.09 Aligned_cols=84 Identities=26% Similarity=0.328 Sum_probs=62.4
Q ss_pred CCCCEEEecCCCCCC---cccccCCccccEEEcccCCCc-cCChhhhccccccEEeccCccccccccch-hhcCCCCCcE
Q 000635 579 QNLQTLCLERSTVGD---IAIIGKLKNLEVLSFLQSDIV-MLPKEIGQLTKLRLLDLTDCFKLKVIATN-VLSSLTRLEA 653 (1380)
Q Consensus 579 ~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~l~~~p~~-~l~~L~~L~~ 653 (1380)
..|++|||+...|+. ..-+..+.+|+.|.+.|+.+. .+-..|.+-.+|+.|+++.|+.+++.... .+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358889999888765 244667888888888888766 34456777888999999888877665432 3677888888
Q ss_pred EEccccccc
Q 000635 654 LYMHNCYVE 662 (1380)
Q Consensus 654 L~l~~~~~~ 662 (1380)
|+++||...
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 888888655
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.59 E-value=0.0032 Score=65.82 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=59.5
Q ss_pred ccccccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
+.....++|-++..+.+.+-.. .....-+.+||..|+|||++++++.+.+..++ .--|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 4456678998888888876543 33344688999999999999999999988653 222222211
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHH-cCCeEEEEEeCCC
Q 000635 227 IAEKLGLTLREESESRRASSLYERLK-KEKKILVVLDNLW 265 (1380)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~ 265 (1380)
....+..+.+.+. ...||+|.+||+.
T Consensus 90 -------------~L~~l~~l~~~l~~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRDRPYKFILFCDDLS 116 (249)
T ss_pred -------------HhccHHHHHHHHhcCCCCEEEEecCCC
Confidence 1112334444444 3689999999985
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00035 Score=87.35 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=95.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcC-C---ccEEEEEEcCCCcCHHHHHHHHH
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDN-I---FDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
...+++||+++++++++.|......-+.++|++|+|||++|+.++....... . .++.+|.. +...+ .
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l 254 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L 254 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h
Confidence 3467999999999999998765445667999999999999999998764322 1 13444421 11111 1
Q ss_pred HHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc----------cchhhhhcCCCCCCCCCeEEEEEecchHHHH
Q 000635 229 EKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS----------LDLETTIGIPYGDDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~----------~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~ 298 (1380)
. |....+ ........+++.+.+.++.+|++|+++.. .+...++...+ . ...-++|-+|...+...
T Consensus 255 a--G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 255 A--GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred c--ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-h-CCCeEEEecCChHHHHH
Confidence 0 111111 22334556666666567789999999743 11222122221 1 22345555555443211
Q ss_pred -------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 299 -------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 299 -------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
.....+.+++++.+.+++.++++...
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123579999999999999998654
No 160
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00075 Score=75.11 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=72.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeE
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKI 257 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 257 (1380)
-+.++|++|+|||++|+.+++.....+....--|+.++. .++... ..|. .. .....+++.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~---~~g~-----~~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQ---YIGH-----TA-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHh---hccc-----ch-HHHHHHHHHc---cCc
Confidence 588999999999999999988876433322112333332 122111 1121 11 1222333332 336
Q ss_pred EEEEeCCCCc-----------cchhhhhcCCCCCCCCCeEEEEEecchHHHHhh--------CCCceeeCCCCCHHHHHH
Q 000635 258 LVVLDNLWKS-----------LDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSM--------GSKENFPIGVLNEQEAWR 318 (1380)
Q Consensus 258 LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 318 (1380)
+|++|++... +.+.. +...+.....+.+||+++......... .....+++++++.+|...
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~-Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEI-LLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHH-HHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 8899999732 11122 222222334566777776543221111 113578999999999999
Q ss_pred HHHhhc
Q 000635 319 LFKLTA 324 (1380)
Q Consensus 319 l~~~~~ 324 (1380)
++...+
T Consensus 203 I~~~~l 208 (284)
T TIGR02880 203 IAGLML 208 (284)
T ss_pred HHHHHH
Confidence 988877
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.002 Score=72.49 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhc--------------CCccEEEEEEcCCCcC
Q 000635 155 EAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKED--------------NIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~--------------~~f~~~~wv~~~~~~~ 219 (1380)
..++|.++..+.+.+.+..++. +...++|+.|+||+++|..+++..-.. .|.| +.|+.-.-...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4688999999999999987764 689999999999999999999986432 1223 23433210000
Q ss_pred HHHHHHHHHHHhCCC--ccccchHHHHHHHHHHHHc----CCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEe
Q 000635 220 IKNIQGEIAEKLGLT--LREESESRRASSLYERLKK----EKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTT 291 (1380)
Q Consensus 220 ~~~~~~~i~~~l~~~--~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTt 291 (1380)
-..+-..-+...+.. ....-..+.++.+.+.+.. +++-++|+|+++... ....+++..=-+. + +.+|++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~ 160 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIA 160 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEE
Confidence 000001111111110 0011122344555555542 567799999997663 2233222111112 3 3455555
Q ss_pred cch-HHHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 292 RDR-SVLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 292 R~~-~v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
.+. .+.. .......+++.+++.++..+.+.+......... ....++..++|.|..+..
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIA 220 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHH
Confidence 443 3333 223346899999999999999998753221111 135788999999966544
No 162
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.54 E-value=0.00067 Score=81.49 Aligned_cols=179 Identities=16% Similarity=0.161 Sum_probs=104.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|++|+|||+|++++++.......-..++++++. ++...+...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 468999999999999999999998754223346677653 2333333333211 1123334443 34
Q ss_pred EEEEEeCCCCccc---h-hhhhcCCCC-CCCCCeEEEEEecchH---------HHHhhCCCceeeCCCCCHHHHHHHHHh
Q 000635 257 ILVVLDNLWKSLD---L-ETTIGIPYG-DDHKGCKVLLTTRDRS---------VLLSMGSKENFPIGVLNEQEAWRLFKL 322 (1380)
Q Consensus 257 ~LlVlDdv~~~~~---~-~~~~~~~~~-~~~~~~~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~~ 322 (1380)
-+||+||++.... + +. +...+. ....|..||+|+.... +..++....++++++.+.++-.+++++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~-l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEE-FFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CEEEEehhhhhcCCHHHHHH-HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4899999975421 1 12 111111 0122445888776531 222444456899999999999999999
Q ss_pred hcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHh------hcC--ChhHHHHHHHHh
Q 000635 323 TADDDVENRRLKSIATQVAKACGGLPIALTTIAKAL------RKK--SVPEWENALQEL 373 (1380)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l------~~~--~~~~w~~~l~~l 373 (1380)
.+.... ..-.++++.-|++.++|....+.-+-..+ .++ +.+..+.+++.+
T Consensus 292 ~~~~~~-~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEEG-IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcC-CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 883311 11123568889999988876544332222 112 555566666654
No 163
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.53 E-value=0.0059 Score=69.12 Aligned_cols=191 Identities=18% Similarity=0.246 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHH-HHHHHHhhhcCCccEEEEEEcCCC---cCHHHHHHHHHHHhCCCc
Q 000635 160 RLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLA-KEVARRAKEDNIFDAVAFSEVSQT---PDIKNIQGEIAEKLGLTL 235 (1380)
Q Consensus 160 R~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 235 (1380)
|.+.+++|..||.+..-..|.|.||-|.||+.|+ .++.++.+ .+..+++.+- .+-..+...++.++|--.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 6678899999999877789999999999999999 55555432 2666666532 234556666666664220
Q ss_pred -----------------------c--ccchHHHHHHHHH-------H--------------------HHc--CCeEEEEE
Q 000635 236 -----------------------R--EESESRRASSLYE-------R--------------------LKK--EKKILVVL 261 (1380)
Q Consensus 236 -----------------------~--~~~~~~~~~~l~~-------~--------------------l~~--~~~~LlVl 261 (1380)
. ..+.+..+..+++ . +.+ ..+=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 0 0111222222111 1 100 13669999
Q ss_pred eCCCCc-----------cchhhhhcCCCCCCCCCeEEEEEecchHHHH----hh--CCCceeeCCCCCHHHHHHHHHhhc
Q 000635 262 DNLWKS-----------LDLETTIGIPYGDDHKGCKVLLTTRDRSVLL----SM--GSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 262 Ddv~~~-----------~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~----~~--~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
||.... .+|...+ ...+-.+||++|-+..... .+ ...+.+.|...+++.|.++...+.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L-----v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL-----VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH-----HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 998544 2454411 1334567999888765544 33 334689999999999999999888
Q ss_pred CCCccC-------------------hhhHHHHHHHHHHhCCChHHHHHHHHHhhcC
Q 000635 325 DDDVEN-------------------RRLKSIATQVAKACGGLPIALTTIAKALRKK 361 (1380)
Q Consensus 325 ~~~~~~-------------------~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~ 361 (1380)
...... .....-....++.+||--.-+..+++.++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 432110 1233346678889999999999999998876
No 164
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0015 Score=80.27 Aligned_cols=180 Identities=16% Similarity=0.201 Sum_probs=107.0
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCC--------------------ccEE
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNI--------------------FDAV 209 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~--------------------f~~~ 209 (1380)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++....... +| +
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 45567899999999999999887665 46789999999999999999988653211 11 1
Q ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCC
Q 000635 210 AFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHK 283 (1380)
Q Consensus 210 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 283 (1380)
+.++...... .+.++.+.+.+. .+++-++|+|+|+... .... +...+-....
T Consensus 91 ~eid~~s~~~---------------------v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~na-LLk~LEepp~ 148 (576)
T PRK14965 91 FEIDGASNTG---------------------VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNA-LLKTLEEPPP 148 (576)
T ss_pred eeeeccCccC---------------------HHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHH-HHHHHHcCCC
Confidence 1122111111 222333333332 1355689999997653 2333 2222222233
Q ss_pred CeEEEEEe-cchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH-HHHHH
Q 000635 284 GCKVLLTT-RDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI-ALTTI 354 (1380)
Q Consensus 284 ~~~ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 354 (1380)
.+.+|++| ....+... ......+++.+++.++....+...+...... -..+.+..|++.++|... |+..+
T Consensus 149 ~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 149 HVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55555544 44434332 2234578899999999988888766221111 112457788999998663 44333
No 165
>CHL00181 cbbX CbbX; Provisional
Probab=97.52 E-value=0.0024 Score=71.02 Aligned_cols=130 Identities=14% Similarity=0.163 Sum_probs=72.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeE
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKI 257 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 257 (1380)
.+.++|++|+||||+|+.+++.....+.-...-|+.++. .++.... .|.. . .....+++. ...-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~-----~-~~~~~~l~~---a~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT-----A-PKTKEVLKK---AMGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc-----h-HHHHHHHHH---ccCC
Confidence 588999999999999999999865432221112444331 1222211 1111 1 112223322 2334
Q ss_pred EEEEeCCCCc-----------cchhhhhcCCCCCCCCCeEEEEEecchHHHH--------hhCCCceeeCCCCCHHHHHH
Q 000635 258 LVVLDNLWKS-----------LDLETTIGIPYGDDHKGCKVLLTTRDRSVLL--------SMGSKENFPIGVLNEQEAWR 318 (1380)
Q Consensus 258 LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~ 318 (1380)
+|++|+++.. +.... +...+.....+.+||+++....... .-.....+.+++++.+|..+
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~-L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEI-LLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHH-HHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 9999999753 11122 2222233345567777775433221 11224579999999999999
Q ss_pred HHHhhc
Q 000635 319 LFKLTA 324 (1380)
Q Consensus 319 l~~~~~ 324 (1380)
++...+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 988877
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0015 Score=73.79 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=90.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcC--------------------CccEEEEEEcCCCcCHHHHHHHHHHHhCCCc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDN--------------------IFDAVAFSEVSQTPDIKNIQGEIAEKLGLTL 235 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (1380)
...+.++|+.|+|||++|..+++..--.. |.| +.|+.-....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~----------------- 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEAD----------------- 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCC-----------------
Confidence 45788999999999999999999875321 222 2222211000
Q ss_pred cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecchHHHH-h-hCCCceee
Q 000635 236 REESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDRSVLL-S-MGSKENFP 307 (1380)
Q Consensus 236 ~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~-~-~~~~~~~~ 307 (1380)
..-..+.++.+.+.+. .+++-++|+|+++... ....+++ .+-....++.+|+||.+..... . ......++
T Consensus 84 -~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK-~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~ 161 (328)
T PRK05707 84 -KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLK-SLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQA 161 (328)
T ss_pred -CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHH-HHhCCCCCeEEEEEECChhhCcHHHHhhceeee
Confidence 0011233344444332 2445566789998762 3333222 2222234677777777653322 2 22346799
Q ss_pred CCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 308 IGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 308 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
+.+++.+++.+.+........ .+.+..++..++|.|.....+
T Consensus 162 ~~~~~~~~~~~~L~~~~~~~~-----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPESD-----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCCcCHHHHHHHHHHhcccCC-----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999987652211 123567789999999754433
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0026 Score=74.85 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=92.3
Q ss_pred ccccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
.+-+|-++..+++++.+. +.+.+++..+|++|+|||.+|+.++..+..+ | +-++++.-.+..++...=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 446788888999998875 3456799999999999999999999998743 3 3466777666666533211
Q ss_pred HHhCCCccccchHHHHHHHHHHHHc--CCeEEEEEeCCCCcc------------------chhhhhcCCCCCCCCCeEEE
Q 000635 229 EKLGLTLREESESRRASSLYERLKK--EKKILVVLDNLWKSL------------------DLETTIGIPYGDDHKGCKVL 288 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~------------------~~~~~~~~~~~~~~~~~~il 288 (1380)
..+| ... .++++.|++ -.+=|+.+|.|+... +-..++..++...-.=|||+
T Consensus 486 TYVG------AMP---GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYVG------AMP---GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeec------cCC---hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 1111 111 234455543 356688899987541 11111112222122335565
Q ss_pred E-EecchHHHH----hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 289 L-TTRDRSVLL----SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 289 v-TtR~~~v~~----~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
+ .|-|. +.. ......+|++.+...+|-..+-+++.
T Consensus 557 FicTAN~-idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANV-IDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccc-cccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 5 33221 111 11223578999988888777766655
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0014 Score=78.56 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=95.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|..|+|||.|+.++++.......--.++++++ .++..++...+... ....+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 35899999999999999999998764222234667664 33333443332211 1122223332 23
Q ss_pred EEEEEeCCCCcc---chhhhhcCCCCC-CCCCeEEEEEecch---------HHHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 257 ILVVLDNLWKSL---DLETTIGIPYGD-DHKGCKVLLTTRDR---------SVLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 257 ~LlVlDdv~~~~---~~~~~~~~~~~~-~~~~~~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
=+|||||+.... .++..+...+.. ...|..|||||+.. .+...+...-++++.+.+.+.-.++++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 488999997552 222212112211 12345688888753 23335555678999999999999999988
Q ss_pred cCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 324 ADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
+....- .--+++++-|++++.+..-.+.-
T Consensus 459 a~~r~l-~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 459 AVQEQL-NAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHhcCC-CCCHHHHHHHHHhccCCHHHHHH
Confidence 833211 11236677788877766554443
No 169
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00087 Score=76.20 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=100.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
...+.|+|..|.|||.|++++++.......=..+++++. ++....++..+.. .......+.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y---~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY---S 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh---c
Confidence 568999999999999999999999885433334555543 2233333332211 0111111111 1
Q ss_pred eEEEEEeCCCCcc---chhhhhcCCCCC-CCCCeEEEEEecch---------HHHHhhCCCceeeCCCCCHHHHHHHHHh
Q 000635 256 KILVVLDNLWKSL---DLETTIGIPYGD-DHKGCKVLLTTRDR---------SVLLSMGSKENFPIGVLNEQEAWRLFKL 322 (1380)
Q Consensus 256 ~~LlVlDdv~~~~---~~~~~~~~~~~~-~~~~~~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~ 322 (1380)
-=++++||++-.. .++.-+...|.. ...|-.||+|++.. .+..++...-++++.+.+.+....++++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 2288999987532 222212222211 22333799998643 4445666677999999999999999998
Q ss_pred hcC---CCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhc---C-ChhHHHHHHHHhc
Q 000635 323 TAD---DDVENRRLKSIATQVAKACGGLPIALTTIAKALRK---K-SVPEWENALQELR 374 (1380)
Q Consensus 323 ~~~---~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~---~-~~~~w~~~l~~l~ 374 (1380)
++. -..+++...-+|..+-+...-+.-|+..+..+-.. . +.+..+.+++.+.
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~ 314 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLL 314 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhh
Confidence 772 22333333333333333333333444333333221 1 4555666666543
No 170
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.41 E-value=0.0015 Score=79.39 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=99.0
Q ss_pred cccccccccchHHHHHHHHHHhc---C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT---D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT 217 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1380)
+.....+++|-++..+++.+++. . ...+-+.++|++|+|||++|+.++...... ++.++.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~- 121 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG- 121 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH-
Confidence 34455667887776655554432 1 123468899999999999999999876521 222221
Q ss_pred cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chhhhhcCC---CC--C
Q 000635 218 PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLETTIGIP---YG--D 280 (1380)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~---~~--~ 280 (1380)
.++.... .+. ....+..+++......+.+|++|+++... .....+... +. .
T Consensus 122 ---~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 ---SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111111 111 12234555555555677899999996531 011101101 10 1
Q ss_pred CCCCeEEEEEecchHHHH-h----hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 281 DHKGCKVLLTTRDRSVLL-S----MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 281 ~~~~~~ilvTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
...+..||.||..+...+ . ..-+..+.++..+.++-.++++..........+ .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 233456666776553222 1 123467899999999999999887743221111 12457788887744
No 171
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=1.7e-05 Score=72.69 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=59.7
Q ss_pred hCCCCccEEEecCcccccccccccCC-CCCCEEEecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEe
Q 000635 553 TGMRKLRVVHFSGMRLASLPYSIGLL-QNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLD 630 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 630 (1380)
.+..+|...+|++|.++++|+.|... +.+++|++++|.|++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 55566667777777777776666533 367777777777766 6667777777777777777777777666677777777
Q ss_pred ccCccccccccch
Q 000635 631 LTDCFKLKVIATN 643 (1380)
Q Consensus 631 L~~~~~l~~~p~~ 643 (1380)
..+|. ...+|-.
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 66653 4444443
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.40 E-value=0.00089 Score=70.89 Aligned_cols=136 Identities=14% Similarity=0.020 Sum_probs=80.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
+.+.|+|++|+|||+|++.+++.... .++. .... .. +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~~-------~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------NE-------EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------ch-------hHH--hcC
Confidence 56899999999999999987766531 1211 0000 00 001 123
Q ss_pred EEEEEeCCCCccchhhhhcCCCC-CCCCCeEEEEEecchH-------HHHhhCCCceeeCCCCCHHHHHHHHHhhcCCCc
Q 000635 257 ILVVLDNLWKSLDLETTIGIPYG-DDHKGCKVLLTTRDRS-------VLLSMGSKENFPIGVLNEQEAWRLFKLTADDDV 328 (1380)
Q Consensus 257 ~LlVlDdv~~~~~~~~~~~~~~~-~~~~~~~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 328 (1380)
-+|++||++...+ .. +...+. -...|..||+|++.+. ...++...-++++++++.++-..++++.+....
T Consensus 87 d~lliDdi~~~~~-~~-lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQE-PA-LLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchH-HH-HHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788899974422 11 111111 1134668999887442 233445556899999999998888888773211
Q ss_pred cChhhHHHHHHHHHHhCCChHHHHH
Q 000635 329 ENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 329 ~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
-.-.+++++-|++++.|--..+.-
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHHHHHH
Confidence 111236677888888776655443
No 173
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0065 Score=63.17 Aligned_cols=190 Identities=18% Similarity=0.171 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc-CCCcCHHHHHHHHHHHhCCCccc--c
Q 000635 162 STLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV-SQTPDIKNIQGEIAEKLGLTLRE--E 238 (1380)
Q Consensus 162 ~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~--~ 238 (1380)
+.+..+...+. ++.+++.++|.-|+|||.++++........ .++-+.+ .+..+...+...++..+..+... .
T Consensus 38 e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 33444444443 444699999999999999999666555422 1222332 34556778888888887763211 1
Q ss_pred chH-HHHHHHHHHHHcCCe-EEEEEeCCCCc--cchhhhhcCCC---CCCCCCeEEEEEec--------chHHHHhhCCC
Q 000635 239 SES-RRASSLYERLKKEKK-ILVVLDNLWKS--LDLETTIGIPY---GDDHKGCKVLLTTR--------DRSVLLSMGSK 303 (1380)
Q Consensus 239 ~~~-~~~~~l~~~l~~~~~-~LlVlDdv~~~--~~~~~~~~~~~---~~~~~~~~ilvTtR--------~~~v~~~~~~~ 303 (1380)
... ...+.+....++++| ..+++|++.+. ..++. ++... .....--+|+..-. .......-...
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~-Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~ 191 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEA-LRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI 191 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHH-HHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE
Confidence 111 122344444555677 99999998765 23333 22111 11111122333221 11111111111
Q ss_pred ce-eeCCCCCHHHHHHHHHhhcCCCcc--ChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 304 EN-FPIGVLNEQEAWRLFKLTADDDVE--NRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 304 ~~-~~l~~L~~~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
.. |++.|++.++...+++.+.+.... +--..+....|.....|.|.+|..++..
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 23 899999999999999888732211 1112355778889999999999877753
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.39 E-value=0.0028 Score=77.94 Aligned_cols=173 Identities=18% Similarity=0.258 Sum_probs=98.1
Q ss_pred ccccccchHHHHHHHHHH---hcCC---------CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH
Q 000635 153 GYEAFESRLSTLKSIRNA---LTDP---------NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI 220 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~---l~~~---------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1380)
...++.|.++..+++.+. +... ..+-|.++|++|+|||++|++++...... |+.++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH---
Confidence 345566766665555444 3321 13468999999999999999999876421 2222211
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chhhhhcCC---CC--CCCC
Q 000635 221 KNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLETTIGIP---YG--DDHK 283 (1380)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~---~~--~~~~ 283 (1380)
++... ..+. ....+..+++......+.+|++||++... ..+..+... +. ....
T Consensus 251 -~f~~~---~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 -EFVEM---FVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -HHHHH---hhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11110 0110 11234555666656788999999996431 111111111 11 1234
Q ss_pred CeEEEEEecchHHHH-hh----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCC
Q 000635 284 GCKVLLTTRDRSVLL-SM----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGL 347 (1380)
Q Consensus 284 ~~~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 347 (1380)
+..||.||...+..+ .+ .-+..+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 566777777654333 11 2246788999999999999998874422221 22356777887773
No 175
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=9.9e-05 Score=76.88 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=59.8
Q ss_pred hCCCCccEEEecCcccc---cccccccCCCCCCEEEecCCCCCC-cccc-cCCccccEEEcccCCCc--cCChhhhcccc
Q 000635 553 TGMRKLRVVHFSGMRLA---SLPYSIGLLQNLQTLCLERSTVGD-IAII-GKLKNLEVLSFLQSDIV--MLPKEIGQLTK 625 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~ 625 (1380)
...++++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+.. +.++ ..+++|++|-|.|+.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45678888888888876 344445678888888888888766 5555 46778888888887654 44555677777
Q ss_pred ccEEeccCc
Q 000635 626 LRLLDLTDC 634 (1380)
Q Consensus 626 L~~L~L~~~ 634 (1380)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777776
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.00072 Score=82.27 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=44.4
Q ss_pred ccccccccccchHHHHHHHHHHhcC-----CCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALTD-----PNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..|....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567778899999999999999863 2335799999999999999999998765
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00069 Score=67.48 Aligned_cols=91 Identities=24% Similarity=0.175 Sum_probs=53.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.|+|++|+||||+|+.++....... ..+++++.+........... .....................+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999987432 34666665543322221111 11111111122223334455555543345
Q ss_pred EEEEEeCCCCccch
Q 000635 257 ILVVLDNLWKSLDL 270 (1380)
Q Consensus 257 ~LlVlDdv~~~~~~ 270 (1380)
.+|++|+++.....
T Consensus 80 ~viiiDei~~~~~~ 93 (148)
T smart00382 80 DVLILDEITSLLDA 93 (148)
T ss_pred CEEEEECCcccCCH
Confidence 99999999877443
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.29 E-value=0.00044 Score=67.74 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=45.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC-eE
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK-KI 257 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~ 257 (1380)
|.|+|++|+|||++|+.+++.... .++.++.+...+. ........+..+++...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999999862 2455554422100 11122334455555554444 89
Q ss_pred EEEEeCCCCc
Q 000635 258 LVVLDNLWKS 267 (1380)
Q Consensus 258 LlVlDdv~~~ 267 (1380)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999754
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0059 Score=72.47 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred ccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHH
Q 000635 157 FESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEK 230 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1380)
-+|-++..++|++.|. .-..+++.++|+||+|||+|++.+++....+ | +-+++++..+..++...=-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccccc
Confidence 4577888888888875 2345799999999999999999999998743 4 445666666655543321111
Q ss_pred hCCCccccchHHHHHHHHHHHHc--CCeEEEEEeCCCCcc------------------chhhhhcCCCCCCCCCeEE-EE
Q 000635 231 LGLTLREESESRRASSLYERLKK--EKKILVVLDNLWKSL------------------DLETTIGIPYGDDHKGCKV-LL 289 (1380)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~------------------~~~~~~~~~~~~~~~~~~i-lv 289 (1380)
+|. .. .++++.+++ .++=+++||.++... +-..+...++...-.=|+| .|
T Consensus 400 IGa------mP---GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 400 IGA------MP---GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccc------CC---hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 111 11 234444432 467799999987541 1111111111111122333 33
Q ss_pred Eecch-H-H-HHhhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 290 TTRDR-S-V-LLSMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 290 TtR~~-~-v-~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
||-|. + + +..+....+|++.+.+++|-.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44332 2 1 1133445689999999999888877665
No 180
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.28 E-value=7.9e-05 Score=76.52 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=74.7
Q ss_pred CCCccEEEecCcccc-----cccccccCCCCCCEEEecCCCCC---C---------cccccCCccccEEEcccCCCc-cC
Q 000635 555 MRKLRVVHFSGMRLA-----SLPYSIGLLQNLQTLCLERSTVG---D---------IAIIGKLKNLEVLSFLQSDIV-ML 616 (1380)
Q Consensus 555 l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~---~---------~~~i~~L~~L~~L~L~~~~l~-~l 616 (1380)
+..+..++||||.|. .+...|.+-.+|+.-+++.-... + .+.+-+|++|+..+||.|-+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 556666666666654 23444455556666666544321 1 144556677777777776443 33
Q ss_pred Ch----hhhccccccEEeccCccccccccchh-------------hcCCCCCcEEEccccccceeeeccCccccccChhh
Q 000635 617 PK----EIGQLTKLRLLDLTDCFKLKVIATNV-------------LSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDE 679 (1380)
Q Consensus 617 p~----~i~~L~~L~~L~L~~~~~l~~~p~~~-------------l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 679 (1380)
|. -|.+-+.|.||.+++|. ++-+..+. ..+-+.|+......|++. +.........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-------ngs~~~~a~~ 180 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-------NGSKELSAAL 180 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-------cCcHHHHHHH
Confidence 33 34556677777777663 44333222 234567777777777654 1111222344
Q ss_pred hcCCCCCcEEEEEecCCC
Q 000635 680 FLHLPRLTTLEIEVRNDD 697 (1380)
Q Consensus 680 l~~l~~L~~L~l~~~~~~ 697 (1380)
|....+|+++.+..|++.
T Consensus 181 l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 181 LESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHhhcCceeEEeeecCcC
Confidence 556677888888877764
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=2.7e-05 Score=71.50 Aligned_cols=105 Identities=11% Similarity=0.232 Sum_probs=83.7
Q ss_pred EEeccCCcccCCCC----CCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccccCCCCCCEEEe
Q 000635 511 ISVRDSSIHELPEG----LKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCL 586 (1380)
Q Consensus 511 lsl~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 586 (1380)
++++++.+.++++. ....+|....+++|.... +|..+-.+++.+..|++++|.|..+|..+..++.||.|++
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhh----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34444544444332 245567777788766543 6777767788999999999999999999999999999999
Q ss_pred cCCCCCC-cccccCCccccEEEcccCCCccCChh
Q 000635 587 ERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKE 619 (1380)
Q Consensus 587 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~ 619 (1380)
+.|.+.. |..|..|.+|-+||..+|.+..+|-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999877 88888999999999999988888865
No 182
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.035 Score=58.56 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=97.2
Q ss_pred ccccccccchHHHHHHHHHHhc-----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALT-----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
|....+|+|.++..+.+.=.+. +...-=|.++|++|.||||||.-+++...+. + -++......-..-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHH
Confidence 5566789999988887765554 3344568999999999999999999998854 1 111111111011111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------c--hhhh---------hcCCCCCCC
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------D--LETT---------IGIPYGDDH 282 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~--~~~~---------~~~~~~~~~ 282 (1380)
.|+..+ +..=++.+|.+.... + ++-. ++..+++
T Consensus 96 aiLt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp-- 151 (332)
T COG2255 96 AILTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP-- 151 (332)
T ss_pred HHHhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC--
Confidence 122111 122233445443220 0 0000 1111111
Q ss_pred CCeEEEEEecchHHHHhhCC--CceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHH
Q 000635 283 KGCKVLLTTRDRSVLLSMGS--KENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAK 356 (1380)
Q Consensus 283 ~~~~ilvTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~ 356 (1380)
-+-|=.|||.-.+...+.. .-+.+++-.+.+|-.+...+.+..-.- +-.++.+.+|+++..|-|.-..-+-+
T Consensus 152 -FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 152 -FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred -eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 1234458886544332221 246788889999999999888732111 11134589999999999965443333
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0059 Score=68.32 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-----------------CccEEEEEEcCCCcCHHHH
Q 000635 162 STLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-----------------IFDAVAFSEVSQTPDIKNI 223 (1380)
Q Consensus 162 ~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~ 223 (1380)
...+.+.+.+..++. ..+.++|+.|+||+++|..+++..-... |.| +.|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 345666666666554 4789999999999999999998764322 122 22221100000
Q ss_pred HHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HH
Q 000635 224 QGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SV 296 (1380)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v 296 (1380)
+......-..+.++.+.+.+. .+++-++|+|+++... .-.++++ .+-.-..++.+|++|.+. .+
T Consensus 86 --------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLK-tLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 86 --------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLK-TLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred --------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHH-HhhCCCCCCeEEEEECChhhC
Confidence 000000011333444444443 2467799999998763 2223222 222223456677766654 23
Q ss_pred HHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 297 LLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 297 ~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
... ......+.+.+++.+++.+.+.... .. ...+..++..++|.|.....
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQG---VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHcC---CC----hHHHHHHHHHcCCCHHHHHH
Confidence 222 2234678999999999998887542 11 12266789999999986543
No 184
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0029 Score=74.78 Aligned_cols=153 Identities=10% Similarity=0.105 Sum_probs=87.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
.-+.|+|+.|+|||+|++++++..... .-.+++++. .++...+...+... . .....+.+ ...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~-----~---~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG-----E---MQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc-----h---HHHHHHHc--ccC
Confidence 468899999999999999999988643 233566653 23334444443211 1 11222222 234
Q ss_pred EEEEEeCCCCccc---hhhhhcCCCCC-CCCCeEEEEEecch---------HHHHhhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 257 ILVVLDNLWKSLD---LETTIGIPYGD-DHKGCKVLLTTRDR---------SVLLSMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 257 ~LlVlDdv~~~~~---~~~~~~~~~~~-~~~~~~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
-+|++||+..... +...+...+.. ...|..||+||... .+..++.....+++.+++.++-.++++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4888999865421 11111111110 11345688888642 22224444568999999999999999988
Q ss_pred cCCCccChhhHHHHHHHHHHhCCCh
Q 000635 324 ADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
+.... ..-.++++.-|++.+.|.-
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 83221 1112355666777776554
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.0004 Score=68.73 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=40.4
Q ss_pred CCCEEEecCCCCCCcccccCCccccEEEcccCCCccCChhhh-ccccccEEeccCccccccccc-hhhcCCCCCcEEEcc
Q 000635 580 NLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPKEIG-QLTKLRLLDLTDCFKLKVIAT-NVLSSLTRLEALYMH 657 (1380)
Q Consensus 580 ~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~~l~~~p~-~~l~~L~~L~~L~l~ 657 (1380)
+...+||++|.+.....+..+..|.+|.+.+|.|+.+-..++ .+++|+.|.+.+|+ +..+.. .-+..+++|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence 344555555555554455555555555555555555544443 23445555555543 222211 114445555565555
Q ss_pred ccccc
Q 000635 658 NCYVE 662 (1380)
Q Consensus 658 ~~~~~ 662 (1380)
+|.+.
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55443
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.23 E-value=0.0016 Score=69.01 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=43.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEE
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAF 211 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w 211 (1380)
+..++.+|......+..++.+. ..|.++|++|+|||+||.+++.+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3455678888888889888664 49999999999999999999986432244665544
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.029 Score=62.85 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEEEEEcCCCcCHHH
Q 000635 163 TLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVAFSEVSQTPDIKN 222 (1380)
Q Consensus 163 ~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~ 222 (1380)
..+.+.+.+..++. ..+.++|+.|+||+++|..+++..--.+ |.|. .|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCcC-----
Confidence 34556666655553 4899999999999999999998764221 2232 22221100
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-H
Q 000635 223 IQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-S 295 (1380)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~ 295 (1380)
...-..+.++.+.+.+. .+++-++|+|+++... ...++++. +-....++.+|++|.+. .
T Consensus 85 -------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 85 -------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKT-LEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred -------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHH-hcCCCCCeEEEEEECChhh
Confidence 00011233344444432 2456689999998663 23332222 22223456666666654 3
Q ss_pred HHH-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHH
Q 000635 296 VLL-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTI 354 (1380)
Q Consensus 296 v~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 354 (1380)
+.. .......+.+.+++.+++.+.+...... .+..++..++|.|+.....
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 333 2333468999999999999988764211 1356788999999865433
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0085 Score=68.44 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=87.4
Q ss_pred ccc-hHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcC--------------------CccEEEEEEc
Q 000635 157 FES-RLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDN--------------------IFDAVAFSEV 214 (1380)
Q Consensus 157 ~~g-R~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~ 214 (1380)
++| .+..++.+.+.+..++. ....++|+.|+||||+|..+++..-... |.|..+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 455 77778888888876664 4679999999999999999998864322 2232211110
Q ss_pred CCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEE
Q 000635 215 SQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVL 288 (1380)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~il 288 (1380)
+.. -..+.++.+.+.+. .+.+-++|+|+++.... ... +...+-....++.+|
T Consensus 87 ~~~---------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~Na-LLK~LEEPp~~~~~I 144 (329)
T PRK08058 87 GQS---------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANS-LLKFLEEPSGGTTAI 144 (329)
T ss_pred ccc---------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHH-HHHHhcCCCCCceEE
Confidence 111 11233334444432 24566899999976532 233 222232233566677
Q ss_pred EEecchH-HHH-hhCCCceeeCCCCCHHHHHHHHHhh
Q 000635 289 LTTRDRS-VLL-SMGSKENFPIGVLNEQEAWRLFKLT 323 (1380)
Q Consensus 289 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~l~~~~ 323 (1380)
++|.+.. +.. .......+++.+++.++..+.+.+.
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7776543 222 2233468999999999998888754
No 189
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.0008 Score=66.71 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=60.8
Q ss_pred CccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccccccccc-CCCCCCEEEecCCCCCC---cccccCCcccc
Q 000635 529 QLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSIG-LLQNLQTLCLERSTVGD---IAIIGKLKNLE 604 (1380)
Q Consensus 529 ~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~---~~~i~~L~~L~ 604 (1380)
+...+++.+|....+. .|..+..|..|.+++|+|+.+...+. .+++|.+|.|.+|.|.. +..+..++.|+
T Consensus 43 ~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 4445555555443321 24566677777777777776644443 34567777777776554 45566667777
Q ss_pred EEEcccCCCccCCh----hhhccccccEEeccCc
Q 000635 605 VLSFLQSDIVMLPK----EIGQLTKLRLLDLTDC 634 (1380)
Q Consensus 605 ~L~L~~~~l~~lp~----~i~~L~~L~~L~L~~~ 634 (1380)
+|.+-+|.++.-+. -+.++++|++||..+.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777776654432 2567777777777654
No 190
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0063 Score=70.37 Aligned_cols=184 Identities=18% Similarity=0.200 Sum_probs=103.8
Q ss_pred ccccccchHHHHHHHHHHhc---C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH
Q 000635 153 GYEAFESRLSTLKSIRNALT---D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI 220 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~---~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1380)
...++-|-++.+.++.+.+. . ...+-|.++|++|.|||.||++++.+..+- | +.++-+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch---
Confidence 45667888888888777664 1 234678999999999999999999998853 2 333221
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--------chh-----hhh---cCCCCCC--C
Q 000635 221 KNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--------DLE-----TTI---GIPYGDD--H 282 (1380)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~~~-----~~~---~~~~~~~--~ 282 (1380)
+|...+. ....+.++++++.-....++++++|+++-.. +.+ .++ ...-... +
T Consensus 258 -----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 1111111 1234457778888777899999999987441 111 111 1111111 2
Q ss_pred CCeEEEE-EecchHHHH----hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh----HHHHH
Q 000635 283 KGCKVLL-TTRDRSVLL----SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP----IALTT 353 (1380)
Q Consensus 283 ~~~~ilv-TtR~~~v~~----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~ 353 (1380)
.+.-||- |+|-..+.. .-.-++.|.+..-++++-.++++.....-.....+. .++|++..-|.- .|+..
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCccchhHHHHHH
Confidence 2322333 444332222 222346788888888777777776662211111111 456666666553 44554
Q ss_pred HHHHh
Q 000635 354 IAKAL 358 (1380)
Q Consensus 354 ~~~~l 358 (1380)
.|+..
T Consensus 406 ~Aa~v 410 (802)
T KOG0733|consen 406 EAAFV 410 (802)
T ss_pred HHHHH
Confidence 55444
No 191
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=4.8e-05 Score=93.90 Aligned_cols=192 Identities=20% Similarity=0.224 Sum_probs=101.7
Q ss_pred cccceEEEeeC--CCCcccchHHHhhcccCceEEEecc-ceEEEeccCccccccccccccccceEecccccccccccCCC
Q 000635 1113 FGCLKQVAVAT--DESECFPLGLLERFLNMEDLYLRAC-SYKEIFSSNDEYLEKDVRNFALIKRLHLVELDDLKHLWKPN 1189 (1380)
Q Consensus 1113 l~~L~~L~l~~--~~~~~~p~~~l~~l~~L~~L~l~~c-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~l~~~~ 1189 (1380)
.+.|+.|.++. ......-......++.|+.|++++| ......+.. .......+.+|+.|+++.|..+.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~isd~~--- 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL---LLLLLSICRKLKSLDLSGCGLVTDIG--- 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH---hhhhhhhcCCcCccchhhhhccCchh---
Confidence 46677776622 2222112345557788888888774 222221111 11223445677777777776644431
Q ss_pred Cchh-hhhhcceeEeeecccccccc-cCCccccccccCEEEeccCcCcccccchHHHhhcccccEEEEeccc---Cccee
Q 000635 1190 SKLE-HILQYLEKLFVSYCQSLLIL-LPSASISFRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCR---AMTEV 1264 (1380)
Q Consensus 1190 ~~~~-~~l~~L~~L~i~~C~~l~~~-~p~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~---~l~~~ 1264 (1380)
.... ..+++|+.|.+.+|..+++. +-.....+++|++|+|++|..+++........+++.|+.|.+..+. .+++.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~ 340 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDL 340 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHH
Confidence 1111 22667777777777765432 1112335666777777777777554333445556666665544443 33333
Q ss_pred eccCCCCCCCCCcccccc--ccceeeeccCCCcccccCCCccccCCCcc-EEEEeccCCc
Q 000635 1265 VTGDENGAANPKEEIVFT--KLKSISLVDLDSLTSFCSANYTFNFPSLQ-DLEVIGCPKM 1321 (1380)
Q Consensus 1265 ~~~~~~~~~~~~~~~~l~--~L~~L~l~~c~~L~~l~~~~~~~~~~sL~-~L~i~~Cp~l 1321 (1380)
.-. .....+ .+..+.+.+|++++.+....+. ..... .+.+.+||++
T Consensus 341 ~l~---------~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 341 SLS---------GLLTLTSDDLAELILRSCPKLTDLSLSYCG--ISDLGLELSLRGCPNL 389 (482)
T ss_pred HHH---------HhhccCchhHhHHHHhcCCCcchhhhhhhh--ccCcchHHHhcCCccc
Confidence 110 111222 5777777777777777655322 23333 4667778777
No 192
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.10 E-value=0.0037 Score=74.33 Aligned_cols=176 Identities=14% Similarity=0.135 Sum_probs=95.4
Q ss_pred ccccccchHHHHHHHHHHh---c-------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHH
Q 000635 153 GYEAFESRLSTLKSIRNAL---T-------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKN 222 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l---~-------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1380)
...++.|.+...+.+.+.. . -...+-|.++|++|+|||.+|+++++..... | +-++.+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------
Confidence 3456777766655554321 1 1234578999999999999999999987632 2 2222211
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc----------hhhhhc---CCCCCCCCCeEEEE
Q 000635 223 IQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD----------LETTIG---IPYGDDHKGCKVLL 289 (1380)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------~~~~~~---~~~~~~~~~~~ilv 289 (1380)
+... .+| . ....+..+++......+++|++|+++.... ....+. ..+.....+.-||.
T Consensus 295 l~~~---~vG-----e-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 LFGG---IVG-----E-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred hccc---ccC-----h-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1110 011 1 122345555555556899999999974310 000010 01111233445666
Q ss_pred EecchHHHH-h----hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 290 TTRDRSVLL-S----MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 290 TtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
||.+....+ . -.-+..+.++.-+.++-.++|+.+................+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 776553222 1 1234578888889999999998877332111000111456667766655
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.01 Score=69.85 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=100.8
Q ss_pred ccccccccccchHHHHHHHHHHhc-------------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC
Q 000635 149 HSIKGYEAFESRLSTLKSIRNALT-------------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS 215 (1380)
Q Consensus 149 ~~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 215 (1380)
.+.....++-|-++..++|.+.+. -...+-|.++|+||.|||++|+++++..... | +.++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvk 500 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVK 500 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eecc
Confidence 445556667778777777765543 1446789999999999999999999998743 3 3333
Q ss_pred CCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc-------------hhhhhcCCCCC--
Q 000635 216 QTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD-------------LETTIGIPYGD-- 280 (1380)
Q Consensus 216 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~~~~~~~~~-- 280 (1380)
.+ +++.. ..| .....+..++++-++-.+.+|.||.++.... +..++ .-+..
T Consensus 501 gp----EL~sk---~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL-tEmDG~e 566 (693)
T KOG0730|consen 501 GP----ELFSK---YVG------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL-TEMDGLE 566 (693)
T ss_pred CH----HHHHH---hcC------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHH-HHccccc
Confidence 22 22111 112 1234456677776666779999998764411 11101 11111
Q ss_pred CCCCeEEEEEecchHHHH--hhC---CCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 281 DHKGCKVLLTTRDRSVLL--SMG---SKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 281 ~~~~~~ilvTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
..++.-||-.|..++..+ .+. .++.+-++.-+.+.-.++|+.++......++. -.++|+++..|.-
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~v--dl~~La~~T~g~S 637 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDV--DLEELAQATEGYS 637 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccc--cHHHHHHHhccCC
Confidence 112333333443332222 222 35678888888888889999988443332221 1345555555543
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.015 Score=65.24 Aligned_cols=173 Identities=11% Similarity=0.060 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC-------c
Q 000635 164 LKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT-------L 235 (1380)
Q Consensus 164 l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~ 235 (1380)
.+.+.+.+..++. ....++|+.|+||+++|..++...--...... .....-...+.+...-..+ .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 4556666665553 57889999999999999999998753221100 0000000111111000000 0
Q ss_pred cccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HHHHh-hCCCceee
Q 000635 236 REESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SVLLS-MGSKENFP 307 (1380)
Q Consensus 236 ~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~~-~~~~~~~~ 307 (1380)
...-..+.++.+.+.+. .+++-++|+|+++... ...++++ .+-....++.+|++|.+. .+... ......+.
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLK-tLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLK-TLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHH-HhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00112334455555443 2566788999998763 2333222 222233456677777654 33322 22346899
Q ss_pred CCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 308 IGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 308 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
+.+++.++..+.+....+.. . ..+...+..++|.|..
T Consensus 163 ~~~~~~~~~~~~L~~~~~~~--~----~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSAE--I----SEILTALRINYGRPLL 199 (325)
T ss_pred CCCCCHHHHHHHHHHHhccC--h----HHHHHHHHHcCCCHHH
Confidence 99999999999988765321 1 1256678889999963
No 195
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00035 Score=72.96 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=64.8
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCcccccccccc-cCCCCCCEEEecCCCCCC---cccccCCc
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPYSI-GLLQNLQTLCLERSTVGD---IAIIGKLK 601 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~---~~~i~~L~ 601 (1380)
.++.++.|++.+|..+... --..++.++++|++|+++.|.+..-..++ -.+.+|++|-|.++.+.- -..+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 5788899999988876554 22456789999999999999876433333 356789999999998654 35677788
Q ss_pred cccEEEcccCCCc
Q 000635 602 NLEVLSFLQSDIV 614 (1380)
Q Consensus 602 ~L~~L~L~~~~l~ 614 (1380)
.++.|.++.|++.
T Consensus 147 ~vtelHmS~N~~r 159 (418)
T KOG2982|consen 147 KVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhccchhh
Confidence 8888888877544
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.04 E-value=0.018 Score=74.07 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 156 AFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.++|.++..+.+.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36788888888887653 22345899999999999999999999986
No 197
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.03 E-value=0.011 Score=60.96 Aligned_cols=175 Identities=21% Similarity=0.293 Sum_probs=103.6
Q ss_pred cccccccchHHHHHH---HHHHhcCC------CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHH
Q 000635 152 KGYEAFESRLSTLKS---IRNALTDP------NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKN 222 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~---l~~~l~~~------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1380)
...++++|.++...+ |.+.|.++ ..+-|..+|++|.|||.+|+++++..++. | +-|.+ .+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l~vka------t~ 186 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---LLVKA------TE 186 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---EEech------HH
Confidence 345668898887654 34555432 36789999999999999999999988743 2 22221 11
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc----------chhhhhcC---CC--CCCCCCeEE
Q 000635 223 IQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL----------DLETTIGI---PY--GDDHKGCKV 287 (1380)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~~~~~---~~--~~~~~~~~i 287 (1380)
+ |-+.+| +....+.+++++-.+..++++.+|.++-.. +..+.+.+ -+ ...+.|...
T Consensus 187 l---iGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 187 L---IGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred H---HHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 1 222222 234557778888777789999999876431 11110111 11 124467777
Q ss_pred EEEecchHHHHh-h--CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 288 LLTTRDRSVLLS-M--GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 288 lvTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
|-.|.+++..+. . .-...|+..--+++|-..+++..+....-+-+ .-.+.++++.+|+-
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 777777655441 1 22245666667788888888887732211110 01456666666653
No 198
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.019 Score=67.40 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=53.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+|+|+|++|+||||++..++.....+.....+..++..... ...+.+....+.++...........+...++.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 4689999999999999999999877643323456666654322 1223344444555655443333334445555553
Q ss_pred CeEEEEEeCCC
Q 000635 255 KKILVVLDNLW 265 (1380)
Q Consensus 255 ~~~LlVlDdv~ 265 (1380)
..=+||+|...
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 34588889875
No 199
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.01 Score=70.69 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=69.9
Q ss_pred cccccccchHHHHHHHHHHhc---------CCC---eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 152 KGYEAFESRLSTLKSIRNALT---------DPN---VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~---------~~~---~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
....++-|-++.+.+|.+-+. ..+ ..-|.++|++|.|||-+|++|+.... .-|++|.++
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP-- 739 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP-- 739 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--
Confidence 344567788888888888764 222 34688999999999999999999877 346666554
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 220 IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
+++... +| ..++..+.++++-++..+++|.||.+++.
T Consensus 740 --ELLNMY---VG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --ELLNMY---VG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --HHHHHH---hc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 333322 22 23455788888888889999999998865
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.024 Score=64.54 Aligned_cols=148 Identities=21% Similarity=0.275 Sum_probs=87.1
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
+...+.+.|++|+|||+||.+++..-. |..+--++..+. .|... ...-..+..+++.-.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~m-------------iG~sE--saKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDM-------------IGLSE--SAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHc-------------cCccH--HHHHHHHHHHHHHhhcC
Confidence 456788999999999999999987754 766655543221 11111 11112233334333335
Q ss_pred CeEEEEEeCCCCccchhhhhcCC---------------CCCCCCCeEEEEEecchHHHHhhCC----CceeeCCCCCH-H
Q 000635 255 KKILVVLDNLWKSLDLETTIGIP---------------YGDDHKGCKVLLTTRDRSVLLSMGS----KENFPIGVLNE-Q 314 (1380)
Q Consensus 255 ~~~LlVlDdv~~~~~~~~~~~~~---------------~~~~~~~~~ilvTtR~~~v~~~~~~----~~~~~l~~L~~-~ 314 (1380)
.=-.||+||++...+|-. ++.- .|+.++.--|+-||....+...|+- ..+|.++.++. +
T Consensus 598 ~lsiivvDdiErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred cceEEEEcchhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 667999999988766654 4322 1233334445557777777775543 35788988887 6
Q ss_pred HHHHHHHhhcCCCccChhhHHHHHHHHHHh
Q 000635 315 EAWRLFKLTADDDVENRRLKSIATQVAKAC 344 (1380)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 344 (1380)
+..+.++..-. ..+.+.+.++++...++
T Consensus 677 ~~~~vl~~~n~--fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNI--FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccC--CCcchhHHHHHHHhccc
Confidence 77777665431 11223344455666555
No 201
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.99 E-value=0.011 Score=69.00 Aligned_cols=164 Identities=23% Similarity=0.267 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC-HHHHHHHHHHHhCCCccc
Q 000635 159 SRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD-IKNIQGEIAEKLGLTLRE 237 (1380)
Q Consensus 159 gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~ 237 (1380)
.|...+.++.+.+..... ++.|.|+-++||||+++.+....... .+++...+... ..++ .+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~---------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDL---------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHH----------
Confidence 344556666666654433 99999999999999997776665532 55554332221 1111 111
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHH-----hh-CCCceeeCCCC
Q 000635 238 ESESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLL-----SM-GSKENFPIGVL 311 (1380)
Q Consensus 238 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~-----~~-~~~~~~~l~~L 311 (1380)
.... ..+...++..++||.|....+|...+.... +.... +|++|+-+..... .. +....+++-||
T Consensus 84 ------~~~~-~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 84 ------LRAY-IELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ------HHHH-HHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 1111 111112678999999999999998555443 33333 7888887654332 22 22457899999
Q ss_pred CHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 312 NEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
+..|-..+....+ ....... .-+-.-..||.|-++..
T Consensus 155 SF~Efl~~~~~~~----~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 155 SFREFLKLKGEEI----EPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred CHHHHHhhccccc----chhHHHH-HHHHHHHhCCCcHHHhC
Confidence 9988776543111 0001111 22233456888877654
No 202
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0048 Score=69.30 Aligned_cols=102 Identities=11% Similarity=0.142 Sum_probs=67.4
Q ss_pred HHHHHHhcC-CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccE-EEEEEcCC-CcCHHHHHHHHHHHhCCCccccchH
Q 000635 165 KSIRNALTD-PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDA-VAFSEVSQ-TPDIKNIQGEIAEKLGLTLREESES 241 (1380)
Q Consensus 165 ~~l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 241 (1380)
.++++.+.. +....+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+ ..++.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666652 334578999999999999999999988643 3344 46766654 4468888888888776543222111
Q ss_pred H------HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 242 R------RASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 242 ~------~~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
. .+..+.+++. ++++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 2233444443 379999999999544
No 203
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.002 Score=68.10 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=31.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS 215 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 215 (1380)
-.++|.|..|+||||++..+..... ..|+++++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecC
Confidence 3688999999999999999998877 568888888653
No 204
>PRK08181 transposase; Validated
Probab=96.95 E-value=0.0018 Score=70.73 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHH
Q 000635 164 LKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRR 243 (1380)
Q Consensus 164 l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 243 (1380)
+....+|+.. ..-+.++|++|+|||.||.++++....+ ...+.|+++ .++...+..... .. .
T Consensus 96 L~~~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~~----~ 157 (269)
T PRK08181 96 IAAGDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----EL----Q 157 (269)
T ss_pred HHHHHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----CC----c
Confidence 3333356643 3468999999999999999999987643 234566653 345554433211 01 1
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCc---cchhhhhcCCCCCCCCCeEEEEEecch
Q 000635 244 ASSLYERLKKEKKILVVLDNLWKS---LDLETTIGIPYGDDHKGCKVLLTTRDR 294 (1380)
Q Consensus 244 ~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~~~~~~~~~~~~~~~ilvTtR~~ 294 (1380)
....++.+. +.=|||+||+... ..+...+...+.....+..+||||...
T Consensus 158 ~~~~l~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 158 LESAIAKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 223344443 4459999999643 111111221221111123588998764
No 205
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.94 E-value=0.0061 Score=61.50 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHhcCCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEEEEEcCCC-
Q 000635 159 SRLSTLKSIRNALTDPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVAFSEVSQT- 217 (1380)
Q Consensus 159 gR~~~l~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~~~- 217 (1380)
|.++..+.+.+.+..++.+ .+.++|+.|+||+++|..+++..-... +.| +.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 5567778888888777655 789999999999999999999864322 222 334433322
Q ss_pred --cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecc
Q 000635 218 --PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRD 293 (1380)
Q Consensus 218 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~ 293 (1380)
..++++. ++...+.... ..+++-++|+||++.. +...+ +...+-....++++|++|++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~Na-LLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNA-LLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHH-HHHHHHSTTTTEEEEEEES-
T ss_pred chhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHH-HHHHhcCCCCCEEEEEEECC
Confidence 2232222 3333322211 0146778999999876 23333 22222223467888888887
Q ss_pred hHH-HH-hhCCCceeeCCCCC
Q 000635 294 RSV-LL-SMGSKENFPIGVLN 312 (1380)
Q Consensus 294 ~~v-~~-~~~~~~~~~l~~L~ 312 (1380)
..- .. .......+.+.+++
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 642 22 22333456665553
No 206
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.91 E-value=0.035 Score=71.72 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=60.1
Q ss_pred ccccchHHHHHHHHHHhc-------CCC--eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT-------DPN--VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~-------~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++|.+..++.+...+. +++ ..++.++|+.|+|||++|+.+++..... -...+.++.+..... .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---
Confidence 347899999888887775 122 2478899999999999999999876422 223455555432111 1
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.+.+-+|... +....+....+.+.+.....-+|+||+++..
T Consensus 642 ~~~~LiG~~p-gy~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPP-GYVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCC-cccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1112233221 1101111122333444344469999999754
No 207
>PRK08118 topology modulation protein; Reviewed
Probab=96.88 E-value=0.00059 Score=69.24 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=29.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhc-CCccEEEE
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKED-NIFDAVAF 211 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 211 (1380)
+.|.|+|++|+||||+|+++++..... -+||.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999998754 45787776
No 208
>PRK08116 hypothetical protein; Validated
Probab=96.87 E-value=0.0023 Score=70.34 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=59.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
..+.++|.+|+|||.||.++++....+ -..++++++ .+++..+........ ......+.+.+. +..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-----KEDENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccc-----cccHHHHHHHhc-CCC
Confidence 458899999999999999999998754 344667663 345555544432211 111223445554 223
Q ss_pred EEEEEeCCCC--ccchhh-hhcCCCCC-CCCCeEEEEEecch
Q 000635 257 ILVVLDNLWK--SLDLET-TIGIPYGD-DHKGCKVLLTTRDR 294 (1380)
Q Consensus 257 ~LlVlDdv~~--~~~~~~-~~~~~~~~-~~~~~~ilvTtR~~ 294 (1380)
||||||+.. ..+|.. .+...+.. ...+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999943 233322 01111111 12455699999754
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.83 E-value=0.0064 Score=63.28 Aligned_cols=88 Identities=25% Similarity=0.260 Sum_probs=58.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCcccc----chHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREE----SESRRASSLYER 250 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~ 250 (1380)
+++|+++|+.|+||||.+.+++.+...+ -..+..++..... ...+-++..++.++...... +..+.+.+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999999998855 4457777765332 35567788899998774322 233334444555
Q ss_pred HHcCCeEEEEEeCCC
Q 000635 251 LKKEKKILVVLDNLW 265 (1380)
Q Consensus 251 l~~~~~~LlVlDdv~ 265 (1380)
...++.=++++|-..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 543344478888653
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.032 Score=68.70 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=64.2
Q ss_pred cccchHHHHHHHHHHhc-------CC--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 156 AFESRLSTLKSIRNALT-------DP--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~-------~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.++|.+++++.+.+.+. ++ ...+....|+.|||||-||++++..+-.. =+..+-++.|+...-..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHs---- 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHS---- 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHH----
Confidence 47899999999998885 22 24577889999999999999999988522 24555565554332222
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 227 IAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
+.+-+|.+. +--.-+.-..+-+..++..-.+|.||+++..
T Consensus 566 VSrLIGaPP-GYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPP-GYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCC-CCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 222233221 1101111234445555333448889999754
No 211
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.11 Score=58.92 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=84.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
|--.++||||.|||+++.++|+.+. ||. .-+..+...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d---------------------Lr~LL~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD---------------------LRHLLLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH---------------------HHHHHHh--CCCC
Confidence 5678999999999999999999987 542 2222222211111 2222211 2567
Q ss_pred EEEEEeCCCCccchhh--------------------h---hcCCCCCCCCCeEE-EEEecchHHHH-----hhCCCceee
Q 000635 257 ILVVLDNLWKSLDLET--------------------T---IGIPYGDDHKGCKV-LLTTRDRSVLL-----SMGSKENFP 307 (1380)
Q Consensus 257 ~LlVlDdv~~~~~~~~--------------------~---~~~~~~~~~~~~~i-lvTtR~~~v~~-----~~~~~~~~~ 307 (1380)
-+||+.|++...+... + +... +..+.+-|| ++||...+-.+ .-..+..+.
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl-wSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL-WSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccc-cccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 7888888764411110 0 1111 112223355 45777654333 112245788
Q ss_pred CCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHH-hhcC
Q 000635 308 IGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKA-LRKK 361 (1380)
Q Consensus 308 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~-l~~~ 361 (1380)
++--+.+.-..|+....+...++. ++.+|.+...|.-+.=+.++.. |+.+
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 888999999999999986544333 3455555555554443444444 4444
No 212
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.025 Score=69.48 Aligned_cols=158 Identities=10% Similarity=0.122 Sum_probs=95.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCcc-----EEEEEEcCCCcCHHHHHHH
Q 000635 152 KGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFD-----AVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~ 226 (1380)
-..++++||+++++++++.|....----.++|.+|+|||++|.-++.+....+-.. .++-.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD------------- 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD------------- 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------
Confidence 35677999999999999999733222335789999999999999999976543221 121111
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc--------hh--hhhcCCCCCCCCCeEEEEEecchHH
Q 000635 227 IAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLD--------LE--TTIGIPYGDDHKGCKVLLTTRDRSV 296 (1380)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------~~--~~~~~~~~~~~~~~~ilvTtR~~~v 296 (1380)
+..-.........-.+++..+.+.+.+.++..|.+|.++.... .+ .++...+..+ .--.|=.||-++ -
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~E-Y 311 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDE-Y 311 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHH-H
Confidence 1111111111223455677788888776699999999875411 22 2122222222 222344455433 2
Q ss_pred HH-------hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 297 LL-------SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 297 ~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
.. .....+.+.++..+.+++...++-..
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 11234688999999999999987544
No 213
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.014 Score=71.11 Aligned_cols=176 Identities=19% Similarity=0.192 Sum_probs=105.9
Q ss_pred cccccchHHH---HHHHHHHhcCCC---------eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHH
Q 000635 154 YEAFESRLST---LKSIRNALTDPN---------VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIK 221 (1380)
Q Consensus 154 ~~~~~gR~~~---l~~l~~~l~~~~---------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1380)
..++.|-++. +.++++.|.++. ++=|.++|++|+|||-||++++-...+. |++++...
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSE--- 379 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSE--- 379 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHH---
Confidence 3456666555 555555565432 4578899999999999999999988753 34444321
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccchh-------------hhhcCCC---C--CCCC
Q 000635 222 NIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSLDLE-------------TTIGIPY---G--DDHK 283 (1380)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~-------------~~~~~~~---~--~~~~ 283 (1380)
..+.+.. .....++.++..-+...+..+.+|+++...--. ..+.+.+ . ....
T Consensus 380 -----FvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 -----FVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -----HHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1111111 113456677777777789999999876441111 0011111 0 1123
Q ss_pred CeEEEEEecchHHHH-----hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 284 GCKVLLTTRDRSVLL-----SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 284 ~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
+.-++-+|+..++.+ .-.-++.+.++.-+.....++|..++.......+..++++ |+....|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 344444666554443 1122467888888889999999998854443344455566 99999888844
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.74 E-value=0.03 Score=61.83 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHH
Q 000635 162 STLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQ 224 (1380)
Q Consensus 162 ~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (1380)
+.++++..++..+. -|.|.|++|+|||++|+.+++... ...+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 34555666665443 567999999999999999998553 124456665555544443
No 215
>PHA00729 NTP-binding motif containing protein
Probab=96.71 E-value=0.0082 Score=62.76 Aligned_cols=36 Identities=33% Similarity=0.384 Sum_probs=29.1
Q ss_pred HHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 166 SIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 166 ~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.+.+.+...+...|.|+|.+|+||||||.+++++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555556667899999999999999999999864
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.014 Score=74.88 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=97.0
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 153 GYEAFESRLSTLKSIRNALTD-------------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
...++.|.++.++++.+.+.. ...+-|.++|++|+|||++|+.+++.... .| +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecH----
Confidence 445688999998888776531 22357889999999999999999988752 22 233321
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--------c-----hhhhhcCCCCC-CCCCe
Q 000635 220 IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--------D-----LETTIGIPYGD-DHKGC 285 (1380)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~-----~~~~~~~~~~~-~~~~~ 285 (1380)
++... ..+ .....+..+++......+.+|++|+++... . ... +...+.. ...+.
T Consensus 247 --~i~~~--------~~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~-Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 --EIMSK--------YYG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQ-LLTLMDGLKGRGR 314 (733)
T ss_pred --HHhcc--------ccc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHH-HHHHhhccccCCC
Confidence 11100 000 112234555555555677899999986431 0 111 1111111 12233
Q ss_pred EEEE-EecchHH-HHhh----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 286 KVLL-TTRDRSV-LLSM----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 286 ~ilv-TtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
.++| ||....- ...+ .-...+.++..+.++-.++++.........++ .....+++.+.|..-+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCHH
Confidence 3444 5544321 1111 12356788888888888888866533221111 1256788888887543
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.66 E-value=0.012 Score=75.61 Aligned_cols=173 Identities=14% Similarity=0.192 Sum_probs=99.6
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 153 GYEAFESRLSTLKSIRNALT-------------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
....+.|.+...+.+.+.+. -...+-|.++|++|+|||++|+++++.... .| +.+..+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f---i~v~~~---- 521 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF---IAVRGP---- 521 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEehH----
Confidence 34556787777776666543 122346899999999999999999998762 22 222211
Q ss_pred HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc---------c-----hhhhhcCCCC--CCCC
Q 000635 220 IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL---------D-----LETTIGIPYG--DDHK 283 (1380)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~-----~~~~~~~~~~--~~~~ 283 (1380)
+++.. .+| .....+..+++...+..+.+|++|+++... . ...++. .+. ....
T Consensus 522 --~l~~~---~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~-~ldg~~~~~ 589 (733)
T TIGR01243 522 --EILSK---WVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLT-EMDGIQELS 589 (733)
T ss_pred --HHhhc---ccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHH-HhhcccCCC
Confidence 11111 111 112345666666666788999999986431 0 111111 111 1223
Q ss_pred CeEEEEEecchHHHH-hh----CCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 284 GCKVLLTTRDRSVLL-SM----GSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 284 ~~~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
+.-||.||..++..+ .+ .-+..+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 455666776654433 11 234678899999999999998776332211111 1456777777765
No 218
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.045 Score=63.62 Aligned_cols=129 Identities=19% Similarity=0.313 Sum_probs=84.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
..-|.+||++|.|||-||+++++..... |+++..+ +++... +| .....+++++++-+...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY---VG------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY---VG------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH---hh------hHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999998743 4555543 333322 22 12345678888888889
Q ss_pred eEEEEEeCCCCcc-------ch------hhhhcCCCC--CCCCCeEEEEEecchHHHH--hh---CCCceeeCCCCCHHH
Q 000635 256 KILVVLDNLWKSL-------DL------ETTIGIPYG--DDHKGCKVLLTTRDRSVLL--SM---GSKENFPIGVLNEQE 315 (1380)
Q Consensus 256 ~~LlVlDdv~~~~-------~~------~~~~~~~~~--~~~~~~~ilvTtR~~~v~~--~~---~~~~~~~l~~L~~~~ 315 (1380)
+++|.||.++... .+ ..++ .-+. ....|.-||-.|..+++.+ .+ .-+...-++.-+.+|
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLL-tElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLL-TELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHH-HHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 9999999987541 11 1111 1111 1345677777777665544 11 224567777778888
Q ss_pred HHHHHHhhcC
Q 000635 316 AWRLFKLTAD 325 (1380)
Q Consensus 316 ~~~l~~~~~~ 325 (1380)
-.++++..+.
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8899888774
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.59 E-value=0.057 Score=63.35 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=54.1
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHHHHHhCCCcccc----chHHHHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEIAEKLGLTLREE----SESRRASSLYE 249 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 249 (1380)
...+|.++|.+|+||||+|..++..+..++ + .+..+++... ....+.+..++++++...... +....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 357999999999999999999999887543 2 4445554322 123455666777777654322 11222333444
Q ss_pred HHHcCCeEEEEEeCCC
Q 000635 250 RLKKEKKILVVLDNLW 265 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~ 265 (1380)
+.. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 443 22 578888874
No 220
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.58 E-value=0.075 Score=63.27 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=117.4
Q ss_pred cccchHHHHHHHHHHhc----C-CCeEEEEEEeCCCchHHHHHHHHHHHhhh------cCCccEEEEEEcCCCcCHHHHH
Q 000635 156 AFESRLSTLKSIRNALT----D-PNVSIIGVYGMGGIGKTTLAKEVARRAKE------DNIFDAVAFSEVSQTPDIKNIQ 224 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~----~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~------~~~f~~~~wv~~~~~~~~~~~~ 224 (1380)
.+-+|+.+..+|-+.+. + +..+.+.|.|-+|+|||..+..|.+.+.. -..|+. +.+++-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHH
Confidence 46689999888887764 3 34458999999999999999999997652 124543 356666666789999
Q ss_pred HHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCccch-hhhhcCCC-CCCCCCeEEEEEec--chHH
Q 000635 225 GEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSLDL-ETTIGIPY-GDDHKGCKVLLTTR--DRSV 296 (1380)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~~-~~~~~~~~-~~~~~~~~ilvTtR--~~~v 296 (1380)
..|..++...... ....+..+-.+.. ..+..+|++|+++....- ++.+-..| ++..+++|++|-+= ..+.
T Consensus 476 ~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 9999888654321 2222333333433 246789999998654220 11111122 34566777666432 1111
Q ss_pred ---------HHhhCCCceeeCCCCCHHHHHHHHHhhcCC--CccChhhHHHHHHHHHHhCCChHHHHHHHHH
Q 000635 297 ---------LLSMGSKENFPIGVLNEQEAWRLFKLTADD--DVENRRLKSIATQVAKACGGLPIALTTIAKA 357 (1380)
Q Consensus 297 ---------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~ 357 (1380)
+..++ ...+...|.+.++-.++...+... .......+-+|++|+.--|..-.|+...-++
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111 245777788888877777777632 2223334445555555555554554444333
No 221
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.013 Score=69.12 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=114.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|....+++|.+.....|...+..++. ......|+-|+||||+|+-++..+--... ....+...-...+.|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 44566789999999999999876653 46778999999999999999998753321 11111121222222222
Q ss_pred H-----hCCCccccchHHHHHHHHHHHHc----CCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecch-HHH
Q 000635 230 K-----LGLTLREESESRRASSLYERLKK----EKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDR-SVL 297 (1380)
Q Consensus 230 ~-----l~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~ 297 (1380)
. +-++-......+.++.+.+.... ++--+.|+|.|+-. ..|.++++. +-......+.|+.|++. .+.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKT-LEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKT-LEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcc-cccCccCeEEEEecCCcCcCc
Confidence 1 01111122345566777776652 35558999999744 456664433 22223455666655544 222
Q ss_pred H-hhCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 298 L-SMGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 298 ~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
. .....+.+.+..++.++....+...+....-.- ..+...-|++..+|-..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCChh
Confidence 2 334456899999999999998888874322111 12446677777777543
No 222
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.073 Score=56.15 Aligned_cols=171 Identities=24% Similarity=0.272 Sum_probs=91.1
Q ss_pred cccccchHHHHHHHHHHhc----------CCC--eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHH
Q 000635 154 YEAFESRLSTLKSIRNALT----------DPN--VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIK 221 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~----------~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (1380)
..++.|-+...+.|.+... ..+ -+-|.++|++|.||+-||++|+..... .|++++...-+.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSDLvS 204 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVS 204 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHHHHH
Confidence 3455666666666666542 122 468999999999999999999987651 234444432111
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc---------cchhhhhcCC-------CCCCCCCe
Q 000635 222 NIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS---------LDLETTIGIP-------YGDDHKGC 285 (1380)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~---------~~~~~~~~~~-------~~~~~~~~ 285 (1380)
+.+|. ....+..+++.-++.++-+|.+|.++.. +.-+. |..- ......|.
T Consensus 205 -------KWmGE------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRR-IKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 205 -------KWMGE------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRR-IKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred -------HHhcc------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHH-HHHHHHHhhhccccCCCce
Confidence 12221 1234455666666789999999998743 11111 2111 12234455
Q ss_pred EEEEEecchHHHH---hhCCCceeeCCCCCHHHH-HHHHHhhcCCCccChhhHHHHHHHHHHhCCC
Q 000635 286 KVLLTTRDRSVLL---SMGSKENFPIGVLNEQEA-WRLFKLTADDDVENRRLKSIATQVAKACGGL 347 (1380)
Q Consensus 286 ~ilvTtR~~~v~~---~~~~~~~~~l~~L~~~~~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 347 (1380)
-|+=.|..+-+.+ +..-...|-+ ||.+..| ..+|+-++|+....- .++-.+++.++..|.
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L-T~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL-TEQDFKELARKTEGY 334 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc-chhhHHHHHhhcCCC
Confidence 5565777664433 1111122222 2333333 456776666543221 122245555555554
No 223
>PRK07261 topology modulation protein; Provisional
Probab=96.56 E-value=0.0067 Score=61.95 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhc-CCccEEEE
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKED-NIFDAVAF 211 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 211 (1380)
.|.|+|++|+||||+|++++...... -+.|.+.|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998876532 13465666
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.56 E-value=0.061 Score=69.71 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=61.6
Q ss_pred ccccchHHHHHHHHHHhc-------CCC--eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT-------DPN--VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~-------~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++|.++.++.+.+.+. +.+ ..++.++|+.|+|||++|+.+++.+-.. -...+-++.+.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 347899999999888774 122 2357799999999999999999887421 123444554433221111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.+.+|... +-...+....+.+.+.+....+++||+++..
T Consensus 585 --~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11122111 0000011123445555455579999999865
No 225
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.052 Score=61.76 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCC-eEEEEEEeCCCchHHHHHHHHHHHhhhc--------------------CCccEEEEEEcCCCcCHH
Q 000635 163 TLKSIRNALTDPN-VSIIGVYGMGGIGKTTLAKEVARRAKED--------------------NIFDAVAFSEVSQTPDIK 221 (1380)
Q Consensus 163 ~l~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~--------------------~~f~~~~wv~~~~~~~~~ 221 (1380)
.-+++.+.+..++ .....++|+.|+||+++|..++...--. .|.|. .++.-....
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~--- 85 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK--- 85 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc---
Confidence 3456666666555 4588899999999999999999987421 12232 122111000
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-
Q 000635 222 NIQGEIAEKLGLTLREESESRRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR- 294 (1380)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~- 294 (1380)
..-..+.++.+.+.+. .+++-++|+|+++... ....+++ .+-.-..++.+|++|.+.
T Consensus 86 ---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLK-tLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 86 ---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLK-TLEEPPENTWFFLACREPA 149 (334)
T ss_pred ---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHH-HhcCCCCCeEEEEEECChh
Confidence 0012334444554443 2577799999998663 2233222 222223456666666654
Q ss_pred HHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHH
Q 000635 295 SVLLS-MGSKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 295 ~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
.+... ....+.+.+.+++.+++.+.+....+. + .+.+..++..++|.|...
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~---~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSREVTM---S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHccCC---C---HHHHHHHHHHcCCCHHHH
Confidence 33322 233457899999999999888754321 1 123678899999999643
No 226
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.52 E-value=0.1 Score=60.59 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=38.3
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 234 (1380)
...+|.++|++|+||||+|..++..++.++ + .+..+++.... ...+.++..++..+.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 357999999999999999999998887442 2 45556554222 2233334455555554
No 227
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0065 Score=68.95 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhcCCC---------eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHH
Q 000635 160 RLSTLKSIRNALTDPN---------VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEK 230 (1380)
Q Consensus 160 R~~~l~~l~~~l~~~~---------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1380)
-..+++++++.|.++. ++-|.++|++|.|||-||++++-...+. +|......|+ +++
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFd--Em~------ 377 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFD--EMF------ 377 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchh--hhh------
Confidence 4456788888887532 4578999999999999999999887753 2233333332 111
Q ss_pred hCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 231 LGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 231 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
+| ....+++.+++.-++.-+++|.+|.++..
T Consensus 378 VG------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 378 VG------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hc------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 12345677777777778999999998754
No 228
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.49 E-value=0.018 Score=73.63 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=61.1
Q ss_pred ccccchHHHHHHHHHHhc-------CCC--eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT-------DPN--VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~-------~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++|.++.++.+.+.+. +++ ..++.++|++|+|||++|+.+++... ...+.++.++.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 346788888888887765 111 23688999999999999999999873 234555554432211
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.+.+.+|... +.-..+....+.+.+.....-+++||+++..
T Consensus 525 ~~~~lig~~~-gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPP-GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCC-CCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1122222211 1001111223444555456679999999865
No 229
>PRK06526 transposase; Provisional
Probab=96.48 E-value=0.0018 Score=70.27 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
.+-+.|+|++|+|||+||..++......+ + .+.|++ ..++...+..... .. .....+..+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~t------~~~l~~~l~~~~~----~~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFAT------AAQWVARLAAAHH----AG----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhhh------HHHHHHHHHHHHh----cC----cHHHHHHHh--cc
Confidence 35689999999999999999998876432 2 234432 3344444432211 00 111223333 24
Q ss_pred eEEEEEeCCCCc
Q 000635 256 KILVVLDNLWKS 267 (1380)
Q Consensus 256 ~~LlVlDdv~~~ 267 (1380)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 458999999744
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.45 E-value=0.024 Score=73.61 Aligned_cols=106 Identities=22% Similarity=0.296 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALTD-------P--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~~-------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++|.+..++.+.+.+.. + ...++.++|++|+|||++|+.++...... -...+.++.+.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 3578999999999888852 1 13468899999999999999999987532 23345555554322111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
..+.+|... +.-..+....+.+.+......+|+||+++..
T Consensus 640 -~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 111122211 1000011123444444445569999999865
No 231
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.014 Score=63.53 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=51.4
Q ss_pred HHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHH
Q 000635 166 SIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRAS 245 (1380)
Q Consensus 166 ~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 245 (1380)
.+.+++. +..-+.++|.+|+|||.||.+++++.. +.. -.+.++++ .++..++....... ....
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~~------~el~~~Lk~~~~~~-------~~~~ 159 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFITA------PDLLSKLKAAFDEG-------RLEE 159 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEEH------HHHHHHHHHHHhcC-------chHH
Confidence 3344554 556799999999999999999999988 322 33555553 45555555443321 1112
Q ss_pred HHHHHHHcCCeEEEEEeCCCCc
Q 000635 246 SLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 246 ~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
++.+.+. +-=||||||+...
T Consensus 160 ~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 160 KLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred HHHHHhh--cCCEEEEecccCc
Confidence 2333332 3449999998653
No 232
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.022 Score=67.30 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=84.3
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc--CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP--DIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
..-|.|.|+.|+|||+||+++++.+. +...-++.+++++.-. .++.+++.+.. ++..-..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 35789999999999999999999988 5566677788776432 34444433321 1112223
Q ss_pred CCeEEEEEeCCCCcc--------chh-----------hhhcCCCCCCCCCeEEEEEecchHHHH-----hhCCCceeeCC
Q 000635 254 EKKILVVLDNLWKSL--------DLE-----------TTIGIPYGDDHKGCKVLLTTRDRSVLL-----SMGSKENFPIG 309 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~~--------~~~-----------~~~~~~~~~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~ 309 (1380)
..+-+|||||++-.. +|. ..+.. +...++.-++|.|.....-.. ......++.+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~-y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI-YLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH-HHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 688999999986431 111 11111 111222224444544322111 11223467888
Q ss_pred CCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCC
Q 000635 310 VLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGL 347 (1380)
Q Consensus 310 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 347 (1380)
.+...+-.++++.........- ......-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCc
Confidence 8888877777766553222111 111233377777764
No 233
>PRK06921 hypothetical protein; Provisional
Probab=96.40 E-value=0.0074 Score=66.28 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=44.8
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
....+.++|.+|+|||.||.++++....+. -..++|+++ .+++..+...+ +......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 346799999999999999999999876431 244667764 23333332221 1112233344 2
Q ss_pred CeEEEEEeCC
Q 000635 255 KKILVVLDNL 264 (1380)
Q Consensus 255 ~~~LlVlDdv 264 (1380)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 4559999999
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.39 E-value=0.023 Score=61.04 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcC--CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc
Q 000635 161 LSTLKSIRNALTD--PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE 238 (1380)
Q Consensus 161 ~~~l~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 238 (1380)
...+..+.+...+ .+...+.++|.+|+|||+||.++++....+ -..++++++ .++...+-..... ..
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~~- 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--SE- 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--cc-
Confidence 3345555554432 223478999999999999999999998743 235666653 4454444333320 00
Q ss_pred chHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 239 SESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 239 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.....+.+.+. +.=+||+||+...
T Consensus 151 ---~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 ---TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ---ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223445553 3448889999654
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.37 E-value=0.026 Score=58.97 Aligned_cols=206 Identities=14% Similarity=0.178 Sum_probs=117.6
Q ss_pred cccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhh----cCCccEEEEEEcCCC----------c-
Q 000635 154 YEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKE----DNIFDAVAFSEVSQT----------P- 218 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~----------~- 218 (1380)
.....++++....+......++.+=..++|+.|.||-|.+..+.++.-. +-+-+...|.+.+.. .
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 3446677777777777665677788899999999999999988887532 112345556554332 1
Q ss_pred ----------CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeE-EEEEeCCCCc--cchhhhhcCCCCCCCCCe
Q 000635 219 ----------DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKI-LVVLDNLWKS--LDLETTIGIPYGDDHKGC 285 (1380)
Q Consensus 219 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~~ 285 (1380)
.-+-+.++++++++...+-+ ....+.| ++|+-.+++. +.-.+ ++...-.-...+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~a-LRRTMEkYs~~~ 158 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHA-LRRTMEKYSSNC 158 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHH-HHHHHHHHhcCc
Confidence 11223333333332211100 0012444 5666666544 22122 332222334566
Q ss_pred EEEEEecch-HHHHhhCC-CceeeCCCCCHHHHHHHHHhhcCC-CccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcC-
Q 000635 286 KVLLTTRDR-SVLLSMGS-KENFPIGVLNEQEAWRLFKLTADD-DVENRRLKSIATQVAKACGGLPIALTTIAKALRKK- 361 (1380)
Q Consensus 286 ~ilvTtR~~-~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~- 361 (1380)
|+|+...+. .+...+.. .-.++++..+++|....+.+.... ...-+ .+++.+|+++++|+-.-.-.+-..++-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 777644322 12222222 236899999999999999988832 22222 5789999999999865444444443311
Q ss_pred ----------ChhHHHHHHHHhc
Q 000635 362 ----------SVPEWENALQELR 374 (1380)
Q Consensus 362 ----------~~~~w~~~l~~l~ 374 (1380)
...+|.-++.++.
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHH
Confidence 3457988887753
No 236
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.15 Score=57.92 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred HHHHHHHHHHH----cCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HHHHh-hCCCceeeCCCCCH
Q 000635 242 RRASSLYERLK----KEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SVLLS-MGSKENFPIGVLNE 313 (1380)
Q Consensus 242 ~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~ 313 (1380)
+.++.+.+.+. .+++-++|+|+++... ....+++. +-.-.+++.+|++|.+. .+... ......+.+.+++.
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKt-LEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~ 193 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKT-LEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAP 193 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHH-hcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCH
Confidence 44555555553 2456688999998762 33333322 22233455555555553 33322 23346899999999
Q ss_pred HHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHH
Q 000635 314 QEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALT 352 (1380)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 352 (1380)
++..+.+.... . . + ...++..++|.|....
T Consensus 194 ~~~~~~L~~~~-~--~-~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 194 EAAAAWLAAQG-V--A-D-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHHHHHHcC-C--C-h-----HHHHHHHcCCCHHHHH
Confidence 99999997752 1 1 1 2235778899997544
No 237
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.015 Score=66.22 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=57.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+++++|+.|+||||++.+++.....+.....+..++.... ....+-++..++.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 469999999999999999999998753322245666665432 23455666777777776544333333334444443
Q ss_pred CeEEEEEeCCCC
Q 000635 255 KKILVVLDNLWK 266 (1380)
Q Consensus 255 ~~~LlVlDdv~~ 266 (1380)
++-++++|....
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 345667998753
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.34 E-value=0.011 Score=66.07 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHhcC----CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 159 SRLSTLKSIRNALTD----PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 159 gR~~~l~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
+|...+....+++.. ...+-+.|+|..|+|||.||.++++....+ .+ .+.++++ .+++..+....+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 566666655666542 234579999999999999999999998743 23 3556654 34555554443211
Q ss_pred ccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc--cchhh--hhcCCCCCC-CCCeEEEEEecc
Q 000635 235 LREESESRRASSLYERLKKEKKILVVLDNLWKS--LDLET--TIGIPYGDD-HKGCKVLLTTRD 293 (1380)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~--~~~~~~~~~-~~~~~ilvTtR~ 293 (1380)
. ....++.+ .+-=||||||+... ..|.. ++...+... ..+-.+|+||.-
T Consensus 207 ----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 22334444 35569999998643 34532 222222211 234568888864
No 239
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.33 E-value=0.054 Score=58.53 Aligned_cols=168 Identities=20% Similarity=0.153 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH-HHHHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI-KNIQGEIAE 229 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~ 229 (1380)
..++|-.++..++..|+. .++.-.|.|+|+.|.|||+|......+.+ ..=+..+-|...+.... +-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 457888888888888775 34445788999999999999888777732 11233444444443322 234556666
Q ss_pred HhCCCcc-----ccchHHHHHHHHHHHHc-----CCeEEEEEeCCCCccc------hhhhhcCCCCCCCCCeEEEEEecc
Q 000635 230 KLGLTLR-----EESESRRASSLYERLKK-----EKKILVVLDNLWKSLD------LETTIGIPYGDDHKGCKVLLTTRD 293 (1380)
Q Consensus 230 ~l~~~~~-----~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~ilvTtR~ 293 (1380)
|+..... ..+-.+....+.+.|+. +.++.+|+|..+--.. +-.++...-....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 6543221 11233456677777764 3568888888754311 111111111234466778899995
Q ss_pred h-------HHHHhhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 294 R-------SVLLSMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 294 ~-------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
. .|-.+..-..++-++.++-++-..++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4 222233333456677788899999998877
No 240
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.33 E-value=0.19 Score=57.93 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcC---CCeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 162 STLKSIRNALTD---PNVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 162 ~~l~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
.-.+.+.+.+.+ ....+|+|.|.=|+|||++.+.+.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344556666653 456799999999999999999999998865
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.33 E-value=0.009 Score=76.75 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=61.8
Q ss_pred ccccchHHHHHHHHHHhc-------CC--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT-------DP--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~-------~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++|.++.++.+.+.+. ++ ...++.++|++|+|||.+|+++++.+... .+..+-++++......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhh----
Confidence 457899999999988874 12 23478999999999999999999887522 2233334433221111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.+.+-+|... +.-..+....+.+.+++...-+|+||+++..
T Consensus 640 ~~~~l~g~~~-gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPP-GYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCC-CcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 1111122211 1000011123445555567779999999754
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.0088 Score=65.08 Aligned_cols=135 Identities=18% Similarity=0.290 Sum_probs=77.5
Q ss_pred cccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHH-hhhcCCccEEEEE----EcCCCc---------CHH
Q 000635 156 AFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARR-AKEDNIFDAVAFS----EVSQTP---------DIK 221 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~-~~~~~~f~~~~wv----~~~~~~---------~~~ 221 (1380)
++-+|..+..--+++|.++++..|.+.|.+|+|||-||.+++-. ..+++.|..++-. .+.++- ...
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 45577888888888999999999999999999999999876543 3334556554431 222111 122
Q ss_pred HHHHHHHHHhCCCc-cccchHHHHHHHHHH--HH-------cC---CeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeE
Q 000635 222 NIQGEIAEKLGLTL-REESESRRASSLYER--LK-------KE---KKILVVLDNLWKS--LDLETTIGIPYGDDHKGCK 286 (1380)
Q Consensus 222 ~~~~~i~~~l~~~~-~~~~~~~~~~~l~~~--l~-------~~---~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ 286 (1380)
-..+.|...+..-. ........+..+..+ ++ ++ .+.++|+|.+.+. .+... .+...+.|+|
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT----iltR~G~GsK 380 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT----ILTRAGEGSK 380 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH----HHHhccCCCE
Confidence 23333333321111 011112222222111 00 12 4568999999876 34444 3445688999
Q ss_pred EEEEecch
Q 000635 287 VLLTTRDR 294 (1380)
Q Consensus 287 ilvTtR~~ 294 (1380)
|+.|---.
T Consensus 381 IVl~gd~a 388 (436)
T COG1875 381 IVLTGDPA 388 (436)
T ss_pred EEEcCCHH
Confidence 99887543
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.30 E-value=0.0046 Score=63.32 Aligned_cols=74 Identities=30% Similarity=0.372 Sum_probs=45.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
..-+.++|.+|+|||.||.++++....++ -.+.|+++ .+++..+- ....... .....+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~------~~L~~~l~----~~~~~~~----~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA------SDLLDELK----QSRSDGS----YEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHH----CCHCCTT----HCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec------Cceecccc----ccccccc----hhhhcCccc--c
Confidence 35799999999999999999999876532 23566663 34444442 2211111 223445554 3
Q ss_pred eEEEEEeCCCCc
Q 000635 256 KILVVLDNLWKS 267 (1380)
Q Consensus 256 ~~LlVlDdv~~~ 267 (1380)
-=||||||+...
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 458889998654
No 244
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.017 Score=66.80 Aligned_cols=140 Identities=18% Similarity=0.148 Sum_probs=82.0
Q ss_pred ccchHHHHHHHHHHhc-CCCeE-EEEEEeCCCchHHHHHHHHHHHhhhcC-------------------CccEEEEEEcC
Q 000635 157 FESRLSTLKSIRNALT-DPNVS-IIGVYGMGGIGKTTLAKEVARRAKEDN-------------------IFDAVAFSEVS 215 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l~-~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~ 215 (1380)
++|-+....++..+.. .++.+ .+.++|++|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677777777776 33334 599999999999999999999876322 12345566665
Q ss_pred CCcC---HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc--chhhhhcCCCCCCCCCeEEEEE
Q 000635 216 QTPD---IKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL--DLETTIGIPYGDDHKGCKVLLT 290 (1380)
Q Consensus 216 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ilvT 290 (1380)
+... ..+..+++.+....... .++.-++++|+++... ...+ +...+-.....+++|++
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~na-llk~lEep~~~~~~il~ 145 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANA-LLKTLEEPPKNTRFILI 145 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHH-HHHHhccCCCCeEEEEE
Confidence 5544 33444444443332211 2577899999998662 2222 22222233456778887
Q ss_pred ecch-HHHHhh-CCCceeeCCCCCH
Q 000635 291 TRDR-SVLLSM-GSKENFPIGVLNE 313 (1380)
Q Consensus 291 tR~~-~v~~~~-~~~~~~~l~~L~~ 313 (1380)
|... .+...+ .....+++.+.+.
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred cCChhhccchhhhcceeeecCCchH
Confidence 7743 222211 1234566666333
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.29 E-value=0.022 Score=62.18 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=40.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCC----ccEEEEEEcCCCcCHHHHHHHHHHHhC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNI----FDAVAFSEVSQTPDIKNIQGEIAEKLG 232 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (1380)
..++.|+|.+|+|||++|.+++........ -..++|++....++..++ .++++..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 468999999999999999999866432221 367999998887765544 33444443
No 246
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.29 E-value=0.035 Score=62.55 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCC----CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCcc
Q 000635 162 STLKSIRNALTDP----NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLR 236 (1380)
Q Consensus 162 ~~l~~l~~~l~~~----~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 236 (1380)
+.+..+..++.++ ..++|+++|+.|+||||-..+++.++.-...=..|..++....- ...+-++..++-++++..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 3455556665544 36899999999999998777777766522223456677654332 344556777888888876
Q ss_pred ccchHHHHHHHHHHHHcCCeEEEEEeCCC
Q 000635 237 EESESRRASSLYERLKKEKKILVVLDNLW 265 (1380)
Q Consensus 237 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 265 (1380)
...........+..+. +. =+|.+|-+.
T Consensus 265 vv~~~~el~~ai~~l~-~~-d~ILVDTaG 291 (407)
T COG1419 265 VVYSPKELAEAIEALR-DC-DVILVDTAG 291 (407)
T ss_pred EecCHHHHHHHHHHhh-cC-CEEEEeCCC
Confidence 6666555655566664 23 455667654
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.28 E-value=0.0078 Score=71.27 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=55.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH-cC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK-KE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~ 254 (1380)
.++..++|++|.||||||.-++++.. | .|+-|++|+.-+...+-..|...+.... .+. ..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ads 386 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS--------------VLDADS 386 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc--------------ccccCC
Confidence 57999999999999999999999876 2 3778999998888877777765543221 111 25
Q ss_pred CeEEEEEeCCCCc
Q 000635 255 KKILVVLDNLWKS 267 (1380)
Q Consensus 255 ~~~LlVlDdv~~~ 267 (1380)
++.-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7889999999765
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.28 E-value=0.061 Score=59.91 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHH-
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLK- 252 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~- 252 (1380)
..++.+.|||++|.|||.+|+++++..... | +-+++++-. . ...++ ....++++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~------s--------k~vGE-sEk~IR~~F~~A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELE------S--------ENAGE-PGKLIRQRYREAAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhh------c--------CcCCc-HHHHHHHHHHHHHH
Confidence 345689999999999999999999998743 2 333332111 0 00011 1122233333221
Q ss_pred ----cCCeEEEEEeCCCCcc--------ch------hhhhc---CC--------C--CCCCCCeEEEEEecchHHHH--h
Q 000635 253 ----KEKKILVVLDNLWKSL--------DL------ETTIG---IP--------Y--GDDHKGCKVLLTTRDRSVLL--S 299 (1380)
Q Consensus 253 ----~~~~~LlVlDdv~~~~--------~~------~~~~~---~~--------~--~~~~~~~~ilvTtR~~~v~~--~ 299 (1380)
++++++|++|+++... .. ..++. .+ + .....+..||+||....... .
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 3688999999986331 11 11110 00 0 12245677888987664322 1
Q ss_pred hC---CCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 300 MG---SKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 300 ~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
.. -+..+ ..-+.++-.++++........+. .-..+|++...|=|+
T Consensus 286 lRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~---~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSR---EDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCH---HHHHHHHHcCCCCCc
Confidence 11 12233 33456777777776663322221 335677777777764
No 249
>PRK10867 signal recognition particle protein; Provisional
Probab=96.27 E-value=0.2 Score=58.67 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=49.4
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC-HHHHHHHHHHHhCCCccc----cchHHHHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD-IKNIQGEIAEKLGLTLRE----ESESRRASSLYE 249 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 249 (1380)
...+|.++|++|+||||.|..++..+..+. -..+..|++..... ..+-++..+++.+++... .+..+......+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 357999999999999999999998876441 12345555442211 223344456666654221 122222223333
Q ss_pred HHHcCCeEEEEEeCCC
Q 000635 250 RLKKEKKILVVLDNLW 265 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~ 265 (1380)
.......-++|+|-.-
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3332223366677654
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0025 Score=66.44 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=38.7
Q ss_pred hCCCCccEEEecCcccccccccccCCCCCCEEEecCC--CCCC--cccccCCccccEEEcccCCCccCC--hhhhccccc
Q 000635 553 TGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERS--TVGD--IAIIGKLKNLEVLSFLQSDIVMLP--KEIGQLTKL 626 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~l~~--~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L 626 (1380)
..+..|..|++.+..++.+ ..+-.|++|++|+++.| ++.. +-...++++|++|++++|+++.+- ....++.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4455555555555555433 22334556666666666 2222 222334456666666666544210 123444445
Q ss_pred cEEeccCc
Q 000635 627 RLLDLTDC 634 (1380)
Q Consensus 627 ~~L~L~~~ 634 (1380)
..|++.+|
T Consensus 119 ~~Ldl~n~ 126 (260)
T KOG2739|consen 119 KSLDLFNC 126 (260)
T ss_pred hhhhcccC
Confidence 55555544
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.24 E-value=0.021 Score=60.89 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=36.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
..++.|+|++|+|||++|.+++...... -..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 4699999999999999999998887533 46789999875 55554433
No 252
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.023 Score=60.65 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=25.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
.|+|.++|+||.|||+|.+++++.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999998654
No 253
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.054 Score=55.39 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=76.0
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
.+++-+.++|++|.|||-||+++|+... ..|+.++.. ++.+..+ |. .....++++-..++
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs----elvqk~i---ge------gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS----ELVQKYI---GE------GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH----HHHHHHh---hh------hHHHHHHHHHHHHh
Confidence 3456789999999999999999987654 345666653 2222211 11 12223444444445
Q ss_pred CCeEEEEEeCCCCccc------------hh----hhhcCCCC--CCCCCeEEEEEecchHHHH-----hhCCCceeeCCC
Q 000635 254 EKKILVVLDNLWKSLD------------LE----TTIGIPYG--DDHKGCKVLLTTRDRSVLL-----SMGSKENFPIGV 310 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~~~------------~~----~~~~~~~~--~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~~ 310 (1380)
..+..|.+|.+++... .+ +++.. +. ...+.-+||+.|..-++.+ .-.-++.++.++
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq-ldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ-LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh-ccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 6788888898865411 00 11111 11 1235568888776544433 222356788888
Q ss_pred CCHHHHHHHHHhhc
Q 000635 311 LNEQEAWRLFKLTA 324 (1380)
Q Consensus 311 L~~~~~~~l~~~~~ 324 (1380)
-+++.-.++++-+.
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHhh
Confidence 88877777776555
No 254
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.025 Score=58.31 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=63.0
Q ss_pred cccccccccchHHHHHHHHHHhc-------------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT-------------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
|...+.++-|-.+.++++.+... -+..+-|.++|++|.|||-.|++++++.... | +.|-.
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig 244 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG 244 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh
Confidence 44456677788888888877653 1335678999999999999999999987632 3 22211
Q ss_pred CcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000635 217 TPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWK 266 (1380)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 266 (1380)
. ++.+.. +| ......+++++..+.++-++|.||.++.
T Consensus 245 s----elvqky---vg------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 S----ELVQKY---VG------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred H----HHHHHH---hh------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 1 122211 11 1223455666666667889999998753
No 255
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0041 Score=59.67 Aligned_cols=24 Identities=50% Similarity=0.628 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+|+|.|++|+||||+|+++++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999874
No 256
>PRK12377 putative replication protein; Provisional
Probab=96.21 E-value=0.019 Score=61.83 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
...+.++|.+|+|||+||.++++....+ .-.++++++. +++..+-...... .....+++.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l--~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQEL--CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHh--cC
Confidence 3578999999999999999999998743 3345676643 4444443332110 0112344444 36
Q ss_pred eEEEEEeCCCC
Q 000635 256 KILVVLDNLWK 266 (1380)
Q Consensus 256 ~~LlVlDdv~~ 266 (1380)
-=|||+||+..
T Consensus 164 ~dLLiIDDlg~ 174 (248)
T PRK12377 164 VDLLVLDEIGI 174 (248)
T ss_pred CCEEEEcCCCC
Confidence 66999999943
No 257
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.20 E-value=0.023 Score=63.29 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=53.0
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
+.++++|+|++|+||||++..++.....+..-..|..++..... ...+.+....+.++...........+...++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 34699999999999999999999888643111346667765422 1233344455556655433333333444455543
Q ss_pred CCeEEEEEeCC
Q 000635 254 EKKILVVLDNL 264 (1380)
Q Consensus 254 ~~~~LlVlDdv 264 (1380)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 2347777754
No 258
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.19 E-value=0.0081 Score=67.29 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhh-----cCCccEEEE
Q 000635 156 AFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKE-----DNIFDAVAF 211 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~-----~~~f~~~~w 211 (1380)
.++|-++.++++++++. ....+++.++|++|+||||+|..+++.... .+.|-.+-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 58899999999999885 234578999999999999999999999864 224444555
No 259
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.18 E-value=0.018 Score=64.25 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=54.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc------cchHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE------ESESRRASSLYE 249 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (1380)
.+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++++|.+.+. ....+....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4699999999999999999988887643 3457899877655542 45666654221 122222333322
Q ss_pred HHHcCCeEEEEEeCCCC
Q 000635 250 RLKKEKKILVVLDNLWK 266 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~~ 266 (1380)
.+.++..-+||+|-|..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 33345667999999753
No 260
>PRK04296 thymidine kinase; Provisional
Probab=96.17 E-value=0.011 Score=61.57 Aligned_cols=110 Identities=20% Similarity=0.145 Sum_probs=61.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc--c-chHHHHHHHHHHHHc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE--E-SESRRASSLYERLKK 253 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~~~l~~~l~~ 253 (1380)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......++.+++..... . ...+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999998643 23344442 1112122233456666654322 1 11222222222 22
Q ss_pred CCeEEEEEeCCCCc--cchhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 254 EKKILVVLDNLWKS--LDLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
++.-+||+|.+.-. +++.+++... ...|..|++|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 34458999999643 2233322221 345778999999853
No 261
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.15 E-value=0.027 Score=71.49 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=84.8
Q ss_pred ccccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHH
Q 000635 155 EAFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIA 228 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (1380)
...+|.++..+++.+++. .....++.++|++|+||||+|+.++..... .|- -++++...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KYV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEE---EEEcCCCCCHHHhccchh
Confidence 347899999999998875 234568999999999999999999987752 232 233444434333322111
Q ss_pred HHhCCCccccchHHHHHHHHHHHHc--CCeEEEEEeCCCCccc------hhhhhcCCCCC---------------CCCCe
Q 000635 229 EKLGLTLREESESRRASSLYERLKK--EKKILVVLDNLWKSLD------LETTIGIPYGD---------------DHKGC 285 (1380)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~------~~~~~~~~~~~---------------~~~~~ 285 (1380)
...|. . . ..+.+.+.. ..+-++++|.++.... ... +...+.+ .-.+.
T Consensus 397 ~~~g~-----~-~---G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~a-Llevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGS-----M-P---GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASA-LLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCC-----C-C---cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHH-HHHHhccccEEEEecccccccccCCce
Confidence 11111 0 0 112222221 1344788999865421 112 1111111 11334
Q ss_pred EEEEEecchHHHHh-hCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 286 KVLLTTRDRSVLLS-MGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 286 ~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
-+|.|+....+... .....++++.+++.+|-.++.+++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44555544322221 1223578899999888877776655
No 262
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.14 E-value=0.05 Score=59.46 Aligned_cols=57 Identities=30% Similarity=0.414 Sum_probs=42.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhc----CCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKED----NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
.+.=|+|.+|+|||+|+.+++-..... +.=..++|++....++.+.+. +|++..+.+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 488899999999999999988775432 123469999999999887764 567766543
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=96.07 E-value=0.083 Score=66.68 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=91.1
Q ss_pred CCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeC
Q 000635 184 MGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDN 263 (1380)
Q Consensus 184 ~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDd 263 (1380)
|.++||||+|..++++.-..+.-..++-+++++......+...+ ..+.... .+...+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~--------------~~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV-KEFARTK--------------PIGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcC--------------CcCCCCCEEEEEEC
Confidence 88999999999999997432222347788888766655443322 2211000 00012457999999
Q ss_pred CCCcc--chhhhhcCCCCCCCCCeEEEEEecch-HHHHh-hCCCceeeCCCCCHHHHHHHHHhhcCC-CccChhhHHHHH
Q 000635 264 LWKSL--DLETTIGIPYGDDHKGCKVLLTTRDR-SVLLS-MGSKENFPIGVLNEQEAWRLFKLTADD-DVENRRLKSIAT 338 (1380)
Q Consensus 264 v~~~~--~~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 338 (1380)
++... .... +...+-.....+++|++|.+. .+... ......+++.+++.++....+...+.. ...- ..+...
T Consensus 639 aD~Lt~~AQnA-LLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~e~L~ 715 (846)
T PRK04132 639 ADALTQDAQQA-LRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQ 715 (846)
T ss_pred cccCCHHHHHH-HHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHH
Confidence 98773 3333 222222223456677666654 22222 223468999999999998888776632 1111 134688
Q ss_pred HHHHHhCCChHHHH
Q 000635 339 QVAKACGGLPIALT 352 (1380)
Q Consensus 339 ~i~~~~~g~Plai~ 352 (1380)
.|++.++|-+..+.
T Consensus 716 ~Ia~~s~GDlR~AI 729 (846)
T PRK04132 716 AILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHcCCCHHHHH
Confidence 99999999885543
No 264
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.07 E-value=0.032 Score=66.96 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=46.5
Q ss_pred cccccccccchHHHHHHHHHHhcC-----CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTD-----PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV 214 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 214 (1380)
.|....+++-..+.++++..||.+ ...+++.++|++|+||||.++.+++... |+.+=|.+.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344455566666778889998862 2356899999999999999999999876 666777643
No 265
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.03 E-value=0.024 Score=56.04 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC---------------------------------------
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ--------------------------------------- 216 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--------------------------------------- 216 (1380)
...+.|+|++|.||||+.+.+|...+.. .+.+|+.--+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 3589999999999999999999987643 3334432100
Q ss_pred ------CcCHHHHHHHHHHHhCCCccc-------cchHHHHHHHHHHHHcCCeEEEEEeC----CCCccchhhhhcCCCC
Q 000635 217 ------TPDIKNIQGEIAEKLGLTLRE-------ESESRRASSLYERLKKEKKILVVLDN----LWKSLDLETTIGIPYG 279 (1380)
Q Consensus 217 ------~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~l~~~l~~~~~~LlVlDd----v~~~~~~~~~~~~~~~ 279 (1380)
...+++-....++.+|+.... ...++.-..+.+.+- +++-+|+-|. ++..-.|+- +...-.
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~i-m~lfee 182 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEI-MRLFEE 182 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHH-HHHHHH
Confidence 001111122223333332211 111222223444443 6888888885 444444543 222112
Q ss_pred CCCCCeEEEEEecchHHHHhhC
Q 000635 280 DDHKGCKVLLTTRDRSVLLSMG 301 (1380)
Q Consensus 280 ~~~~~~~ilvTtR~~~v~~~~~ 301 (1380)
-+..|+.||++|.+..+...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 3556999999999998877664
No 266
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.01 Score=63.79 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHhc---CCCeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 159 SRLSTLKSIRNALT---DPNVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 159 gR~~~l~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|++++..+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47777888888774 456779999999999999999999999864
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=95.98 E-value=0.016 Score=63.48 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
..+.|+|++|+|||+||..++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999887653
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.98 E-value=0.024 Score=63.31 Aligned_cols=83 Identities=30% Similarity=0.366 Sum_probs=54.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE-----ESESRRASSLYER 250 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1380)
.+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.+.+. ....+.+..+.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4689999999999999999988877633 3568899987766643 45556654221 1112222333333
Q ss_pred H-HcCCeEEEEEeCCC
Q 000635 251 L-KKEKKILVVLDNLW 265 (1380)
Q Consensus 251 l-~~~~~~LlVlDdv~ 265 (1380)
+ .++.--+||+|-|.
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3 34566799999875
No 269
>PRK09354 recA recombinase A; Provisional
Probab=95.97 E-value=0.028 Score=63.21 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=56.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE-----ESESRRASSLYER 250 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1380)
.+++-|+|++|+||||||.+++...... -..++|++....++. ..++++|.+.+. ....+....+.+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998877643 356889998877664 346666665321 1112222233333
Q ss_pred H-HcCCeEEEEEeCCCC
Q 000635 251 L-KKEKKILVVLDNLWK 266 (1380)
Q Consensus 251 l-~~~~~~LlVlDdv~~ 266 (1380)
+ .++..-+||+|-|..
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 3 345667999999853
No 270
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.054 Score=61.18 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=54.2
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
+.++|+|+|++|+||||++..++.....++ ..+..+++.... ...+-+...++.++...........+...++.+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 347999999999999999999998876432 235556654322 12233444555666654433333444445555542
Q ss_pred C-CeEEEEEeCCCC
Q 000635 254 E-KKILVVLDNLWK 266 (1380)
Q Consensus 254 ~-~~~LlVlDdv~~ 266 (1380)
. +.=+|++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234778887643
No 271
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.94 E-value=0.021 Score=66.56 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCcc
Q 000635 156 AFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFD 207 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~ 207 (1380)
.|+||++.++.+...+..++ -|.|.|++|+|||++|+.++........|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 48999999999998887554 588999999999999999999875444454
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.015 Score=65.67 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=29.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV 214 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 214 (1380)
..+.++|.+|+|||.||.++++....++ ..|+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 6799999999999999999999987543 35677775
No 273
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.17 Score=57.35 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=79.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc---------------------CCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED---------------------NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
...+.++|+.|+||||+|..++...--. .|.|. .++........ -|.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~-~~~~p~~~~~~----------~g~- 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDF-YEITPLSDEPE----------NGR- 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEEeccccccc----------ccc-
Confidence 4578899999999999999999986421 12232 22221100000 000
Q ss_pred ccccchHHHHHHHHHHHHc----CCeEEEEEeCCCCccc--hhh---hhcCCCCCCCCCeEEEEEecchH-HHHh-hCCC
Q 000635 235 LREESESRRASSLYERLKK----EKKILVVLDNLWKSLD--LET---TIGIPYGDDHKGCKVLLTTRDRS-VLLS-MGSK 303 (1380)
Q Consensus 235 ~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~~--~~~---~~~~~~~~~~~~~~ilvTtR~~~-v~~~-~~~~ 303 (1380)
....-..+.++.+.+.+.. +++-++|+|+++..+. ... .+..+ ..++.+|++|.+.. +... ....
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep----~~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP----PPQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC----cCCCEEEEEeCChHhChHHHHHHh
Confidence 0000123344445444431 3455666788876532 112 12222 23466777777654 2222 2224
Q ss_pred ceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHH
Q 000635 304 ENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 304 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
..+++.+++.+++.+.+.+.. . ... ... +..++|-|+.
T Consensus 165 ~~~~~~~~~~~~~~~~L~~~~-~--~~~-----~~~-l~~~~g~p~~ 202 (325)
T PRK08699 165 RKMVLPAPSHEEALAYLRERG-V--AEP-----EER-LAFHSGAPLF 202 (325)
T ss_pred hhhcCCCCCHHHHHHHHHhcC-C--CcH-----HHH-HHHhCCChhh
Confidence 678999999999998887542 1 111 111 3568898854
No 274
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.063 Score=61.89 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcC--CccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDN--IFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERL 251 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 251 (1380)
..++|.++|+.|+||||.+..++..+.... .-..|..+++.... ...+.++..++.++.+.........+...+..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999998876321 22356666665422 223346667777777654333333333333443
Q ss_pred HcCCeEEEEEeCCCC
Q 000635 252 KKEKKILVVLDNLWK 266 (1380)
Q Consensus 252 ~~~~~~LlVlDdv~~ 266 (1380)
...-++++|.+..
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998753
No 275
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00069 Score=70.15 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=8.6
Q ss_pred hCCCCccEEEecCcccccc
Q 000635 553 TGMRKLRVVHFSGMRLASL 571 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~l 571 (1380)
.+|+.|.||.||-|.|+.|
T Consensus 38 ~kMp~lEVLsLSvNkIssL 56 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL 56 (388)
T ss_pred HhcccceeEEeeccccccc
Confidence 4444444444444444443
No 276
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.025 Score=54.38 Aligned_cols=46 Identities=33% Similarity=0.504 Sum_probs=37.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcc
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLR 236 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (1380)
+|+|.|++|+||||+|+.+++.+.-+ .+ +...+++++++..|++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999998732 12 234688999999988753
No 277
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.63 Score=47.99 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
+..+-|.++|++|.|||.||+++++..... | +.+... ++.+ +.+|.. ....+.+++--++
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----efvq---kylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----EFVQ---KYLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----HHHH---HHhccC------cHHHHHHHHHHhc
Confidence 445778999999999999999999987632 3 322221 1212 223322 2334555555566
Q ss_pred CCeEEEEEeCCCCcc------------chhh----hhcCCC-CCCCCCeEEEEEecchHHHH-----hhCCCceeeCCCC
Q 000635 254 EKKILVVLDNLWKSL------------DLET----TIGIPY-GDDHKGCKVLLTTRDRSVLL-----SMGSKENFPIGVL 311 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~~------------~~~~----~~~~~~-~~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L 311 (1380)
+.+..|.+|.++... +.+. ++...= -+...+.|||+.|...+..+ .-.-++.++.+--
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCC
Confidence 788899999886441 1111 111110 12345678888775432221 2122456777644
Q ss_pred CHHHHHHHHHhhc
Q 000635 312 NEQEAWRLFKLTA 324 (1380)
Q Consensus 312 ~~~~~~~l~~~~~ 324 (1380)
+..+-.-.|....
T Consensus 327 drrqkrlvf~tit 339 (408)
T KOG0727|consen 327 DRRQKRLVFSTIT 339 (408)
T ss_pred chhhhhhhHHhhh
Confidence 5555555565554
No 278
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.84 E-value=0.023 Score=58.64 Aligned_cols=37 Identities=35% Similarity=0.507 Sum_probs=29.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE 213 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1380)
...+|.+.|++|+||||+|+.+++.... .+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 3458999999999999999999999874 355555654
No 279
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.83 E-value=0.049 Score=58.99 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=38.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcC----CccEEEEEEcCCCcCHHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDN----IFDAVAFSEVSQTPDIKNIQGEIAEK 230 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (1380)
..++.|+|.+|+|||++|.+++....... .=..++|++....++...+. .+++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 46999999999999999999988764321 11568899988776655443 33343
No 280
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.83 E-value=0.39 Score=56.29 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=51.8
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccc----cchHHHHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLRE----ESESRRASSLYE 249 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 249 (1380)
...++.++|.+|+||||.|..++.....+..+ .+..+++.... ...+.+...+.+.+.+... .+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35799999999999999999999886532222 34555554221 2233444556666655322 122233334444
Q ss_pred HHHcCCeEEEEEeCCC
Q 000635 250 RLKKEKKILVVLDNLW 265 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~ 265 (1380)
.......=++|+|-..
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4432333378888765
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.011 Score=56.57 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDN 204 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~ 204 (1380)
-.|.|+|++|+||||+++.+++.++.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999988654
No 282
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.80 E-value=0.043 Score=61.71 Aligned_cols=58 Identities=29% Similarity=0.342 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc----CCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED----NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
.+++-|+|++|+|||+++.+++-..... ..=..++|++....++.+++. +++++++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4688899999999999999987654321 112468999999888888764 467777654
No 283
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.79 Score=52.18 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=40.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC-CCcCHHHHHHHHHHHhCCCcc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS-QTPDIKNIQGEIAEKLGLTLR 236 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~ 236 (1380)
+.+|..+|.-|.||||.|..+++.++.+++ .+.-|++. ..+..-+-++.++.+.+.+..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~--kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGK--KVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCC--ceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 568999999999999999999999986322 23333332 122334556778888877643
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.058 Score=60.74 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=59.1
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD-IKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
+.++++++|+.|+||||++..++.....++ ..+.++++..... ..+-++..++.++.......+...+...++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 357999999999999999999998875432 3577777754332 3445566777777654433334444555555542
Q ss_pred -CCeEEEEEeCCCC
Q 000635 254 -EKKILVVLDNLWK 266 (1380)
Q Consensus 254 -~~~~LlVlDdv~~ 266 (1380)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3446788898754
No 285
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.78 E-value=0.16 Score=61.09 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=70.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhc-C-----CccEEEEEEcCC-----CcC------------HHHHHHHHHHHhCC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKED-N-----IFDAVAFSEVSQ-----TPD------------IKNIQGEIAEKLGL 233 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~-~-----~f~~~~wv~~~~-----~~~------------~~~~~~~i~~~l~~ 233 (1380)
..|+|+|+.|+|||||.+.++...... + .--.+.|+.-.. ..+ ...-.+..+.+++.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 479999999999999999997765422 1 111122322211 001 12334444555554
Q ss_pred Ccccc-------chHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhh--hcCCCCCCCCCeEEEEEecchHHHHhhCCCc
Q 000635 234 TLREE-------SESRRASSLYERLKKEKKILVVLDNLWKSLDLETT--IGIPYGDDHKGCKVLLTTRDRSVLLSMGSKE 304 (1380)
Q Consensus 234 ~~~~~-------~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~~~ilvTtR~~~v~~~~~~~~ 304 (1380)
..... +.-+..+-.+..+.-.++-+||||.=.+.-+.+.. +...+. .-.| .||+.|.++....... .+
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~-~f~G-tvl~VSHDr~Fl~~va-~~ 505 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEG-TVLLVSHDRYFLDRVA-TR 505 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH-hCCC-eEEEEeCCHHHHHhhc-ce
Confidence 43221 22233444455555578899999976655333320 111111 1234 4889999998877655 34
Q ss_pred eeeCC
Q 000635 305 NFPIG 309 (1380)
Q Consensus 305 ~~~l~ 309 (1380)
++.+.
T Consensus 506 i~~~~ 510 (530)
T COG0488 506 IWLVE 510 (530)
T ss_pred EEEEc
Confidence 45544
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=95.75 E-value=0.086 Score=59.58 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=52.4
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC--HHHHHHHHHHHhCCCccc----cchHHHHHHHH
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD--IKNIQGEIAEKLGLTLRE----ESESRRASSLY 248 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 248 (1380)
+..+|.++|++|+||||++..++..+...+ + .++.+... .+. ..+.+...+..++..... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 457999999999999999999998876432 3 34445432 222 233455667777765321 11112222222
Q ss_pred HHHHcCCeEEEEEeCCCCc
Q 000635 249 ERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 249 ~~l~~~~~~LlVlDdv~~~ 267 (1380)
+.......=++++|-+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238999987543
No 287
>PRK06762 hypothetical protein; Provisional
Probab=95.73 E-value=0.15 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=22.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
.+|.|+|++|+||||+|+++++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999887
No 288
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.00086 Score=69.46 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCCcccccCCccccEEEcccCCCccCCh--hhhccccccEEec
Q 000635 554 GMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGDIAIIGKLKNLEVLSFLQSDIVMLPK--EIGQLTKLRLLDL 631 (1380)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L 631 (1380)
.+.+.+.|++-|+++..+ ....+++.|++|.|+-|.|+.+..+..+++|+.|+|+.|.|..+-+ .+.+|++|+.|-|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 355667778888877654 2235788899999999999998889999999999999998887643 4678899999998
Q ss_pred cCccccccccc----hhhcCCCCCcEEE
Q 000635 632 TDCFKLKVIAT----NVLSSLTRLEALY 655 (1380)
Q Consensus 632 ~~~~~l~~~p~----~~l~~L~~L~~L~ 655 (1380)
..|.....-+. ..+.-|++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 88765555443 2466788888887
No 289
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.097 Score=64.14 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=78.2
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+.+.++|++|.|||.||+++++..+. .|-.+.+ . ++... .+| .....+..+++.-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~~-----~----~l~sk---~vG------esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVKG-----S----ELLSK---WVG------ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEeeC-----H----HHhcc---ccc------hHHHHHHHHHHHHHcC
Confidence 3458999999999999999999997662 2433322 1 11000 111 1123345555555567
Q ss_pred CeEEEEEeCCCCccchh---------hh---hcCCCC--CCCCCeEEEEEecchHHHH---hh--CCCceeeCCCCCHHH
Q 000635 255 KKILVVLDNLWKSLDLE---------TT---IGIPYG--DDHKGCKVLLTTRDRSVLL---SM--GSKENFPIGVLNEQE 315 (1380)
Q Consensus 255 ~~~LlVlDdv~~~~~~~---------~~---~~~~~~--~~~~~~~ilvTtR~~~v~~---~~--~~~~~~~l~~L~~~~ 315 (1380)
.+..|.+|+++....+. .. +...+. ....+..||-||..+...+ .. .-+..+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999987542211 10 111111 1223444555665543333 11 235688999999999
Q ss_pred HHHHHHhhcCC
Q 000635 316 AWRLFKLTADD 326 (1380)
Q Consensus 316 ~~~l~~~~~~~ 326 (1380)
..+.|..+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999999853
No 290
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.70 E-value=0.0093 Score=59.36 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=24.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
+.|.++|.+|+||||+|+++++.++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 468899999999999999999998854
No 291
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.63 E-value=0.025 Score=71.26 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=60.2
Q ss_pred cccchHHHHHHHHHHhc-------CC--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 156 AFESRLSTLKSIRNALT-------DP--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~-------~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.++|.++.++.+.+.+. +. ....+.++|++|+|||++|+.++.... . ..+.++.+...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccc----c
Confidence 47888999888888875 11 134789999999999999999999874 2 23344444322211 1
Q ss_pred HHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 227 IAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
+.+-+|... +....+....+.+.+.+....+|+||+++..
T Consensus 530 ~~~LiG~~~-gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCC-CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 222233221 1000011122334444456679999999865
No 292
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.60 E-value=0.059 Score=61.00 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=43.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc----CCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED----NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++-|+|.+|+|||+|+.+++-..... +.-..++|++....++.+++. ++++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 3588899999999999999987654321 122468999999988888764 467777665
No 293
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.52 E-value=0.07 Score=57.69 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=26.6
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
.+..+|+|.|+.|+|||||++.++...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 556799999999999999999999988754
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.51 E-value=0.093 Score=61.83 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC-HHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD-IKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
.++++++|++|+||||++..++........-..+..++...... ..+.+...++.++...............++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 35899999999999999999988775111234567777654221 223344445556665433333333333333332
Q ss_pred CeEEEEEeCCC
Q 000635 255 KKILVVLDNLW 265 (1380)
Q Consensus 255 ~~~LlVlDdv~ 265 (1380)
..=+||+|...
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 34688889763
No 295
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.49 E-value=0.068 Score=57.96 Aligned_cols=92 Identities=21% Similarity=0.331 Sum_probs=57.5
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCC-------ccccchH-----
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLT-------LREESES----- 241 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 241 (1380)
+-..++|.|.+|+||||||+++++....+ +-+.++++-+.+.. ...++.+.+...=... ..++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34589999999999999999999998753 23456666666544 4556666554431111 0011111
Q ss_pred -HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000635 242 -RRASSLYERLK--KEKKILVVLDNLWKS 267 (1380)
Q Consensus 242 -~~~~~l~~~l~--~~~~~LlVlDdv~~~ 267 (1380)
..+..+.+++. +++.+|+|+||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12234455554 279999999998654
No 296
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.47 E-value=0.076 Score=54.04 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=31.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
++.|+|.+|+||||++.+++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999998864 245678888765543
No 297
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.17 Score=55.77 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=23.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+-|.++|++|.|||-||++||.....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 57899999999999999999999873
No 298
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.42 E-value=0.084 Score=57.07 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=35.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNI 223 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1380)
..++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4699999999999999999999887633 4678999987 4554443
No 299
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.39 E-value=0.03 Score=59.79 Aligned_cols=62 Identities=29% Similarity=0.340 Sum_probs=49.6
Q ss_pred HHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 166 SIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 166 ~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
+++..+. .++..+|+|+|.||+|||||.-++...+..+++=-.|+-|+-+++++--.++.+=
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 3444443 5667799999999999999999999999888877788888888888766665543
No 300
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.38 E-value=0.032 Score=58.86 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=40.3
Q ss_pred HHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 165 KSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 165 ~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.++++.+. .++..+|+|+|+||+|||||..++...+..+++=-+|+-|+-+++++--.++.+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 34444443 456789999999999999999999999987666566777777777765555443
No 301
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.37 E-value=0.092 Score=56.51 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=35.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
..++.|.|.+|+||||+|.+++.....++ ..+++++.. .+..++.+.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 35999999999999999988777654322 345666643 3445666655 44544
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.064 Score=61.57 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=49.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+++++|++|+||||+|.+++........+ .+..++..... ...+.+...++.++....... ....+.+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~---~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehH---HHHHHHHHHHhC
Confidence 4689999999999999999999866322222 34444443211 123444555566666543221 233444444433
Q ss_pred CeEEEEEeCC
Q 000635 255 KKILVVLDNL 264 (1380)
Q Consensus 255 ~~~LlVlDdv 264 (1380)
..=+||+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3346889943
No 303
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.25 E-value=0.075 Score=54.69 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=47.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccc----cchHHHHHHHHHHHH
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLRE----ESESRRASSLYERLK 252 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~l~ 252 (1380)
++.++|++|+||||++..++......+ ..++.++..... ...+.+...+...+..... .+..+..........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999876432 234555544321 2333344445555543211 122222223333333
Q ss_pred cCCeEEEEEeCCCC
Q 000635 253 KEKKILVVLDNLWK 266 (1380)
Q Consensus 253 ~~~~~LlVlDdv~~ 266 (1380)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 33333566887644
No 304
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24 E-value=0.07 Score=61.48 Aligned_cols=85 Identities=25% Similarity=0.304 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE--SESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1380)
..++.|.|.+|+||||++.+++...... -..++|++..+. ..++ ..-+++++...+.- .....+..+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 3689999999999999999999887643 246888876543 3333 22345666543211 011123445555555
Q ss_pred CCeEEEEEeCCC
Q 000635 254 EKKILVVLDNLW 265 (1380)
Q Consensus 254 ~~~~LlVlDdv~ 265 (1380)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 566788999874
No 305
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.23 E-value=0.13 Score=50.21 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=73.7
Q ss_pred chHHHH-HHHHHHHHHHHhhhhhccccchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcHHHHHHHHHHHHH
Q 000635 2 VEIIIN-VVFEVAKWLAAPIGRQVSYLSKSNYTSSFENLKKEVEKLRGERESMRQRVEEAERNRQEIEKNVEKWLERVNK 80 (1380)
Q Consensus 2 ~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~~wl~~~~~ 80 (1380)
||.+++ |++.++..++..+.+...... ..+.-++.|..+++.|.-.+++.+..+...|.+-+.=++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~---------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSL---------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 455544 555555555555554444333 4455667777788888888887777655556555777899999
Q ss_pred HHHHHhhhcccccccccccccCCCcChHHHhHHHHHHHHHHHHHHHHH
Q 000635 81 IIDETVKITGDEETATKHCIKGLCPNLKTRYQLSKKAATLVKDIVELR 128 (1380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 128 (1380)
...+++++++++..- ...++...++++++|+++.+.+....
T Consensus 74 ~L~~g~~LV~k~sk~-------~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 74 LLEKGKELVEKCSKV-------RRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHhccc-------cHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999988754321 11345566778899999888887643
No 306
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.23 E-value=0.77 Score=51.85 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.2
Q ss_pred eeeCCCCCHHHHHHHHHhhcCCCc--cChhhHHHHHHHHHHhCCChHHH
Q 000635 305 NFPIGVLNEQEAWRLFKLTADDDV--ENRRLKSIATQVAKACGGLPIAL 351 (1380)
Q Consensus 305 ~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai 351 (1380)
.+++++++.+|+..++.-...... .....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988773221 11233455667777779999643
No 307
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.23 E-value=0.11 Score=59.34 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCC----ccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNI----FDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++-|+|++|+|||+++.+++........ =..++|++..+.++...+. ++++.++.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~ 163 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLD 163 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCC
Confidence 468899999999999999999877543211 1479999998888877654 445555543
No 308
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.20 E-value=0.14 Score=64.27 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=81.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
+-|.|+|++|+|||++|+.++..... .| +.++.+. +.. + ..+. .......+++......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~--~~g~------~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-M--FVGV------GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-h--hhcc------cHHHHHHHHHHHHhcCC
Confidence 35999999999999999999888763 23 2233221 111 0 0111 11223444444444678
Q ss_pred EEEEEeCCCCccc------------hhhhhcCC---CC--CCCCCeEEEEEecchHHHH-hh----CCCceeeCCCCCHH
Q 000635 257 ILVVLDNLWKSLD------------LETTIGIP---YG--DDHKGCKVLLTTRDRSVLL-SM----GSKENFPIGVLNEQ 314 (1380)
Q Consensus 257 ~LlVlDdv~~~~~------------~~~~~~~~---~~--~~~~~~~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ 314 (1380)
.+|++|+++.... ....+... +. ....+.-||.||..++..+ .+ .-++.+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 9999999865410 11101111 11 1223455666777665433 11 23467888888888
Q ss_pred HHHHHHHhhcCCCccChhhHHHHHHHHHHhCCCh
Q 000635 315 EAWRLFKLTADDDVENRRLKSIATQVAKACGGLP 348 (1380)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 348 (1380)
+-.++++.+.......++. ....+++.+.|..
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~s 357 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPGFS 357 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCCC
Confidence 8888888777432211111 1334666666643
No 309
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.17 E-value=0.11 Score=59.14 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=43.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcC----CccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDN----IFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++-|+|.+|+||||++.+++....... .=..++|++....++.+.+. ++++.++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 46889999999999999999988764211 11379999998888877654 455666544
No 310
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.17 E-value=0.095 Score=57.88 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=29.8
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP 218 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1380)
....+|+|.|..|+||||+|+.+.........-..+..++.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 445799999999999999998877666421001135555554433
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.012 Score=36.39 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=16.5
Q ss_pred CccEEEecCcccccccccccCC
Q 000635 557 KLRVVHFSGMRLASLPYSIGLL 578 (1380)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~L 578 (1380)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888776653
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.15 E-value=0.11 Score=56.43 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=37.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
..++.|.|.+|+|||++|.+++.....+ -..++|++... +..++.+.+ .+++.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM-AQFGW 73 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH-HHhCC
Confidence 4699999999999999999987765422 35688888654 444555543 34443
No 313
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.071 Score=59.59 Aligned_cols=86 Identities=29% Similarity=0.363 Sum_probs=60.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE--SESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1380)
..+|.|-|-+|+|||||..+++.+...+. .+.||+-.+ +..++ +--+++|+.....- -.....+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 35899999999999999999999998553 677776443 44433 33466777644321 122235567777777
Q ss_pred CCeEEEEEeCCCCc
Q 000635 254 EKKILVVLDNLWKS 267 (1380)
Q Consensus 254 ~~~~LlVlDdv~~~ 267 (1380)
.++-++|+|-+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 88999999988543
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.10 E-value=0.051 Score=59.48 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC-C-------ccccchHHHH
Q 000635 173 DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL-T-------LREESESRRA 244 (1380)
Q Consensus 173 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~-------~~~~~~~~~~ 244 (1380)
..+..-++|.|+.|.||||+.+.++...... .+.+++.-.+.... +-..+++...+. . .+..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHH
Confidence 3445789999999999999999999877532 33333321111100 011223222211 0 0001111123
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHHH
Q 000635 245 SSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 245 ~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~ 298 (1380)
..+...+....+-++|+|.+...+.+..++.. + ..|..||+||.+..+..
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~-~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEA-L---HAGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH-H---hCCCEEEEEechhHHHH
Confidence 33444444457889999999877666653332 2 24778999999766544
No 315
>PRK05439 pantothenate kinase; Provisional
Probab=95.10 E-value=0.12 Score=57.42 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=45.8
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH--HHHHhCCCccccchHHHHHHHHHHH
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE--IAEKLGLTLREESESRRASSLYERL 251 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~l~~~l 251 (1380)
....+|+|.|.+|+||||+|+.+.........-..+.-++..+-....+.+.. +...- ..++.-+.+.....+..+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~k--g~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRK--GFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccC--CCcccccHHHHHHHHHHH
Confidence 44569999999999999999999887653211123445555544332222221 11111 122333445566677777
Q ss_pred HcCCe
Q 000635 252 KKEKK 256 (1380)
Q Consensus 252 ~~~~~ 256 (1380)
++++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 76554
No 316
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.09 E-value=0.03 Score=55.03 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=28.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE 213 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1380)
..+|.|+|.+|+||||||+++.+++...+ ..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 35899999999999999999999998653 4455655
No 317
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.47 Score=56.69 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=87.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
.-|.++|++|.|||-||.+++..... -++++.++ +++.+ .+|. .++.++.++.+.+..++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----ElL~K---yIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----ELLSK---YIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----HHHHH---Hhcc------cHHHHHHHHHHhhccCC
Confidence 35899999999999999999988763 35666554 33332 2332 34557788888887899
Q ss_pred EEEEEeCCCCccc-------------hhhhhcCCC-CCCCCCeEEEEEecchHHHH-----hhCCCceeeCCCCCHHHHH
Q 000635 257 ILVVLDNLWKSLD-------------LETTIGIPY-GDDHKGCKVLLTTRDRSVLL-----SMGSKENFPIGVLNEQEAW 317 (1380)
Q Consensus 257 ~LlVlDdv~~~~~-------------~~~~~~~~~-~~~~~~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~ 317 (1380)
+.+.||..++..- ...++...= ..+-.|.-|+..|..++..+ .-.-++.+.-+.-++.|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999876510 111111110 12335666666444443322 1122344555555677777
Q ss_pred HHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 318 RLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
++|+..+..-..+.+ ...+.++.+.+|..=
T Consensus 842 ~il~~ls~s~~~~~~--vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 842 EILQVLSNSLLKDTD--VDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHhhccCCccc--cchHHHhhhcCCCch
Confidence 777766632111111 114566666666653
No 318
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.07 E-value=0.069 Score=51.77 Aligned_cols=106 Identities=13% Similarity=0.290 Sum_probs=54.2
Q ss_pred CchhhhhCCCCccEEEecCcccccc-cccccCCCCCCEEEecCCCCCC--cccccCCccccEEEcccCCCccCCh-hhhc
Q 000635 547 VPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIVMLPK-EIGQ 622 (1380)
Q Consensus 547 lp~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~ 622 (1380)
++...|.++.+|+.+.+.. .+..+ ...|..+.+|+.+.+.++ +.. -..+.++.+|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4555667777777777764 45555 344666667777777664 444 24466666777777755 4444443 4556
Q ss_pred cccccEEeccCccccccccchhhcCCCCCcEEEccc
Q 000635 623 LTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHN 658 (1380)
Q Consensus 623 L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~ 658 (1380)
+++|+.+++..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777777777542 556666666665 777776654
No 319
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.06 E-value=0.044 Score=56.33 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=38.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcc
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLR 236 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (1380)
.|+|+|-||+||||+|..++.+...++. ..+.-|++..++++. .+||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 5899999999999999998887775543 346677877777644 45666654
No 320
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.44 Score=49.37 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.9
Q ss_pred cccccccccchHHHHHHHHHHhcC-------------CCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTD-------------PNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
|...++++.|-++.++++++.+.- ..++-|..+|++|.|||-+|++.+.+..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 444567788899999999988741 2245788999999999999999887765
No 321
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.04 E-value=0.015 Score=60.84 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=51.5
Q ss_pred hCCCCccEEEecCc--ccc-cccccccCCCCCCEEEecCCCCCC---cccccCCccccEEEcccCCCccCCh----hhhc
Q 000635 553 TGMRKLRVVHFSGM--RLA-SLPYSIGLLQNLQTLCLERSTVGD---IAIIGKLKNLEVLSFLQSDIVMLPK----EIGQ 622 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~ 622 (1380)
..+.+|+.|.+|.| .+. .++-....+++|++|++++|+|+. +..+.++.+|..||+.+|..+.+-. -+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 44566666666666 332 344444455777777777777654 3455667777788888876655422 3466
Q ss_pred cccccEEeccCc
Q 000635 623 LTKLRLLDLTDC 634 (1380)
Q Consensus 623 L~~L~~L~L~~~ 634 (1380)
|++|.+|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 788888876554
No 322
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.04 E-value=0.11 Score=54.69 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=30.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCc--------cEEEEEEcCCCc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIF--------DAVAFSEVSQTP 218 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~~ 218 (1380)
.++.|+|++|+||||++.+++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488999999999999999999987753323 368888876653
No 323
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.02 E-value=0.23 Score=66.50 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.+-|.++|++|+|||.||+++|.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 567899999999999999999998763
No 324
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.01 E-value=0.11 Score=58.74 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=41.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc---C-CccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED---N-IFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++.|+|.+|+||||++.+++...... + .-..++|++..+.++..+ +.++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 4689999999999999999988743321 1 123579999888777766 34566666554
No 325
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.00 E-value=0.097 Score=59.42 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=43.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc---C-CccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED---N-IFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++-|+|.+|+|||+++.+++-..... + .-..++|++....++.+++ .+|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 4688899999999999999888654321 1 1136999999998888776 4567777654
No 326
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.00 E-value=0.097 Score=56.28 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=33.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
..++.|+|.+|+||||+|.+++...... -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 4689999999999999999999887532 34678888755543
No 327
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.97 E-value=0.049 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998774
No 328
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.97 E-value=0.1 Score=55.73 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=28.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP 218 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1380)
+|+|.|.+|+||||+|+.++........=..+..++....+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999987631111234555555443
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.95 E-value=0.093 Score=54.84 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=31.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
++.|.|++|+|||++|.+++...... =..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999998876532 24577887654 34444433
No 330
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.93 E-value=0.032 Score=65.79 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=42.2
Q ss_pred cccccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 154 YEAFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
..+++|-++.++++++.+. +.+.+++.++|++|+||||||+.+++..+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3458899999999999882 556689999999999999999999998774
No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.91 E-value=0.79 Score=51.13 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCC-eEEEEEEeCCCchHHHHHHHHHHHh--------hhcCCccEEEEEEc-CCCcCHHHHHHHHHHHhCC
Q 000635 164 LKSIRNALTDPN-VSIIGVYGMGGIGKTTLAKEVARRA--------KEDNIFDAVAFSEV-SQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 164 l~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 233 (1380)
++.+...+..++ ..+..++|..|.||+++|..+++.. ....+.+.+.+++. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344455555444 4577899999999999999999997 22223333444432 1222233322 22222221
Q ss_pred CccccchHHHHHHHHHHHHcCCeEEEEEeCCCCccc--hhhhhcCCCCCCCCCeEEEEEecch-HHHHh-hCCCceeeCC
Q 000635 234 TLREESESRRASSLYERLKKEKKILVVLDNLWKSLD--LETTIGIPYGDDHKGCKVLLTTRDR-SVLLS-MGSKENFPIG 309 (1380)
Q Consensus 234 ~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~ilvTtR~~-~v~~~-~~~~~~~~l~ 309 (1380)
.. ...+.+-++|+|+++.... ..+ +...+-....++.+|++|.+. .+... ......+++.
T Consensus 84 ~~---------------~~~~~~KvvII~~~e~m~~~a~Na-LLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 84 SS---------------FVQSQKKILIIKNIEKTSNSLLNA-LLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred CC---------------cccCCceEEEEecccccCHHHHHH-HHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 10 0114777899999876532 223 222222234456666655443 33322 3345789999
Q ss_pred CCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHH
Q 000635 310 VLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTT 353 (1380)
Q Consensus 310 ~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 353 (1380)
++++++..+.+... + . + ++.++.++...+|.-.|+..
T Consensus 148 ~l~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 99999998887754 2 1 1 12355666666663344443
No 332
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.90 E-value=0.0096 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=11.3
Q ss_pred cccEEEcccCCCccCChhhhc
Q 000635 602 NLEVLSFLQSDIVMLPKEIGQ 622 (1380)
Q Consensus 602 ~L~~L~L~~~~l~~lp~~i~~ 622 (1380)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355555555555555555443
No 333
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.88 E-value=0.021 Score=59.28 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=104.0
Q ss_pred CCCCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccccc-cc-------------ccCCCCCCEEEecCC
Q 000635 524 GLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLP-YS-------------IGLLQNLQTLCLERS 589 (1380)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~-------------i~~L~~L~~L~L~~~ 589 (1380)
...||+|+..++++|.+..-......+++++-+.|.+|.+++|++..+. .- ..+-+.|++.+.-.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4589999999999887754331222466788999999999999876431 11 224477999999888
Q ss_pred CCCC-c-----ccccCCccccEEEcccCCCcc-----C-ChhhhccccccEEeccCcccccccc----chhhcCCCCCcE
Q 000635 590 TVGD-I-----AIIGKLKNLEVLSFLQSDIVM-----L-PKEIGQLTKLRLLDLTDCFKLKVIA----TNVLSSLTRLEA 653 (1380)
Q Consensus 590 ~l~~-~-----~~i~~L~~L~~L~L~~~~l~~-----l-p~~i~~L~~L~~L~L~~~~~l~~~p----~~~l~~L~~L~~ 653 (1380)
++.. + ..+..-.+|.++.+..|.|.. + -.++..+.+|+.||+.+|+. +... ...+...+.|++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf-t~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-TLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch-hhhhHHHHHHHhcccchhhh
Confidence 8765 3 223334578888888887751 1 12345678899999998863 2211 122556677899
Q ss_pred EEccccccceeeeccCccccccChhhhc--CCCCCcEEEEEecC
Q 000635 654 LYMHNCYVEWEVETRGSEKRSASLDEFL--HLPRLTTLEIEVRN 695 (1380)
Q Consensus 654 L~l~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 695 (1380)
|.+..|-+.. ......+..+. ..++|..|...+|.
T Consensus 247 L~lnDClls~-------~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 247 LRLNDCLLSN-------EGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccccchhhcc-------ccHHHHHHHhhhhcCCCccccccchhh
Confidence 9988886651 01112222232 23566776666554
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.86 E-value=0.13 Score=56.68 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=51.8
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH--HHHHHHHHHHhCCCccc----cchHHHHHHH
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI--KNIQGEIAEKLGLTLRE----ESESRRASSL 247 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~----~~~~~~~~~l 247 (1380)
.+.++++++|++|+||||++..++..+... -..+.++++.. +.. .+-+...++..+..... .+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 345799999999999999999999888643 23566776653 222 23334455565544211 1111222122
Q ss_pred HHHHHcCCeEEEEEeCCCC
Q 000635 248 YERLKKEKKILVVLDNLWK 266 (1380)
Q Consensus 248 ~~~l~~~~~~LlVlDdv~~ 266 (1380)
.+....+..=++|+|-...
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 2333223445788897643
No 335
>PRK06547 hypothetical protein; Provisional
Probab=94.85 E-value=0.038 Score=56.23 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.4
Q ss_pred HHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 167 IRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 167 l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+...+......+|+|.|++|+||||+|+.+++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444456778999999999999999999998754
No 336
>PRK07667 uridine kinase; Provisional
Probab=94.85 E-value=0.051 Score=56.87 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=29.5
Q ss_pred HHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 165 KSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 165 ~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+.+.+.+. .+...+|+|.|.+|+||||+|..++.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444443 344579999999999999999999998864
No 337
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.18 Score=55.02 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=55.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHH-hCCC-ccccchHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEK-LGLT-LREESESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~~ 253 (1380)
.+++=|+|+.|+||||+|.+++-..... -..++|++.-+.++...+.. ++.. +..- .......+....+.+.+.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4688899999999999999988887633 44889999999888776533 3333 2111 1111222233333333332
Q ss_pred ---CCeEEEEEeCCC
Q 000635 254 ---EKKILVVLDNLW 265 (1380)
Q Consensus 254 ---~~~~LlVlDdv~ 265 (1380)
.+--|+|+|-|-
T Consensus 137 ~~~~~i~LvVVDSva 151 (279)
T COG0468 137 SGAEKIDLLVVDSVA 151 (279)
T ss_pred hccCCCCEEEEecCc
Confidence 235688999874
No 338
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.81 E-value=0.024 Score=55.02 Aligned_cols=22 Identities=59% Similarity=0.893 Sum_probs=20.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHh
Q 000635 179 IGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
|+|.|.+|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 339
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.19 Score=62.53 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
.++|+++|+.|+||||++..++..+........|..++..... ...+.++...+.+++......+...+...++.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 4699999999999999999999887532222356666654321 2445667777777776543333344445555553 3
Q ss_pred CeEEEEEeCCC
Q 000635 255 KKILVVLDNLW 265 (1380)
Q Consensus 255 ~~~LlVlDdv~ 265 (1380)
+ =+|++|-..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 488889775
No 340
>PTZ00035 Rad51 protein; Provisional
Probab=94.80 E-value=0.17 Score=57.74 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=41.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhc----CCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKED----NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++.|+|.+|+||||++.+++-..... ..-..++|++....++.+++ .++++.++..
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 4689999999999999999987665411 11235779998877776663 5556666654
No 341
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.16 Score=59.05 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=51.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
..+|+++|+.|+||||++..++.........+.+..+..... ....+-+..+++.+++.................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 469999999999999999999886543222344555554331 12334455667777766543333333333333442
Q ss_pred CeEEEEEeCC
Q 000635 255 KKILVVLDNL 264 (1380)
Q Consensus 255 ~~~LlVlDdv 264 (1380)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3446667765
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.78 E-value=0.04 Score=57.87 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=56.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
.+|.|+|+.|.||||++..++...... ....++.--........-...+..+-... .........+...+. ..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~vg---~~~~~~~~~i~~aLr-~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREVG---LDTLSFENALKAALR-QDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeecccC---CCccCHHHHHHHHhc-CCc
Confidence 478999999999999999988876532 23333322111100000000111110111 111112223333343 356
Q ss_pred EEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHHH
Q 000635 257 ILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVL 297 (1380)
Q Consensus 257 ~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v~ 297 (1380)
=.+++|++.+.+.+...+... ..|..++.|+....+.
T Consensus 76 d~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcHH
Confidence 699999998776655423222 2345577777765443
No 343
>PTZ00301 uridine kinase; Provisional
Probab=94.75 E-value=0.068 Score=56.23 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=23.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999988875
No 344
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.74 E-value=0.059 Score=53.10 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=45.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEE
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKIL 258 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 258 (1380)
|.|+|++|+|||++|+.+++... ..+.-+.++...+..++....--.-+...-... .+.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~------~l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDG------PLVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-------CCCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccc------cccccc--cceeE
Confidence 67999999999999999999984 234556777777777765433211000000000 001111 27899
Q ss_pred EEEeCCCCc
Q 000635 259 VVLDNLWKS 267 (1380)
Q Consensus 259 lVlDdv~~~ 267 (1380)
+|||++...
T Consensus 69 l~lDEin~a 77 (139)
T PF07728_consen 69 LVLDEINRA 77 (139)
T ss_dssp EEESSCGG-
T ss_pred EEECCcccC
Confidence 999999743
No 345
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.68 E-value=0.057 Score=66.42 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=62.5
Q ss_pred cccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAE 229 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (1380)
|+.-...++|+++.++.+...+... +.+.++|++|+||||+|+.+++.... ..++.++|..- ...+...+++.++.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHH
Confidence 3445677999999999888877655 36889999999999999999988653 34677888665 44567788888887
Q ss_pred HhCCC
Q 000635 230 KLGLT 234 (1380)
Q Consensus 230 ~l~~~ 234 (1380)
++|..
T Consensus 102 ~~G~~ 106 (637)
T PRK13765 102 GKGKQ 106 (637)
T ss_pred hcCHH
Confidence 77654
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.65 E-value=0.027 Score=47.30 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
+|+|.|.+|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 347
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.63 E-value=0.27 Score=54.77 Aligned_cols=85 Identities=29% Similarity=0.349 Sum_probs=52.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc-----cchHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE-----ESESRRASSLYER 250 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 250 (1380)
.+++-|+|+.|+||||||..+....... -..++|+++....+.. .++.+|++.+. .+..+.+-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3589999999999999999999887643 3568999988776543 45666766432 1222333334444
Q ss_pred H-HcCCeEEEEEeCCCCc
Q 000635 251 L-KKEKKILVVLDNLWKS 267 (1380)
Q Consensus 251 l-~~~~~~LlVlDdv~~~ 267 (1380)
+ +.+.--++|+|-|...
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 4 4455569999998655
No 348
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.075 Score=54.96 Aligned_cols=28 Identities=46% Similarity=0.627 Sum_probs=25.3
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+..+|+|.|.+|+||||+|+.++..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3569999999999999999999999884
No 349
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.60 E-value=0.31 Score=50.34 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=67.8
Q ss_pred cccccccchHHHHHHHHHHhc----CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 152 KGYEAFESRLSTLKSIRNALT----DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
.+...++|-+...+.+.+--. .-..--|.+||.-|+|||+|++++.+.+..+ .-. -|.|.+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k----------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDK----------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcH-----------
Confidence 445567777766666665432 2223358899999999999999999998754 211 222221
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHc-CCeEEEEEeCCCCc---cchhhhhcCCCCC---CCCCeEEEEEecch
Q 000635 228 AEKLGLTLREESESRRASSLYERLKK-EKKILVVLDNLWKS---LDLETTIGIPYGD---DHKGCKVLLTTRDR 294 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~---~~~~~~~~~~~~~---~~~~~~ilvTtR~~ 294 (1380)
.+......+++.|+. ..||.|..||..-. +.... ++..+-. +.+...++..|.++
T Consensus 122 -----------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~-LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 -----------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKA-LKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHH-HHHHhcCCcccCCCeEEEEEecCC
Confidence 112223445555553 68999999998533 22333 3333321 22444566655543
No 350
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.60 E-value=0.037 Score=57.34 Aligned_cols=52 Identities=27% Similarity=0.306 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE
Q 000635 160 RLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE 213 (1380)
Q Consensus 160 R~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1380)
+..+.....+.+. +..++.+.|++|+|||.||.+.+-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3344555566665 445899999999999999999998876668899988865
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.068 Score=54.55 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.|.|.|++|+||||+|+.+++.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999653
No 352
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.58 E-value=0.18 Score=54.83 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=37.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
..++.|+|.+|+|||++|.+++.....+ =..++|++..+. ..++.+.+ .+++.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~ 77 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKI 77 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCC
Confidence 4689999999999999999997664322 356889888654 44555543 34443
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.58 E-value=0.26 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+|.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998763
No 354
>PRK04328 hypothetical protein; Provisional
Probab=94.58 E-value=0.14 Score=55.98 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++.|.|.+|+|||++|.+++.....+ -..++|++.... ..++ ...+++++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i-~~~~~~~g~d 76 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQV-RRNMRQFGWD 76 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHH-HHHHHHcCCC
Confidence 4689999999999999999988774322 356788887653 3343 3334555543
No 355
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.53 E-value=0.033 Score=58.44 Aligned_cols=26 Identities=50% Similarity=0.686 Sum_probs=23.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
+|+|.|++|+||||+|++++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999998753
No 356
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.44 E-value=0.17 Score=59.82 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=50.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
.++++++|+.|+||||++..++..+..+..-..+..++.... ....+-++..++.+++.................+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--R 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--c
Confidence 369999999999999999999988754322234556665431 1233445555666666543221111111122233 2
Q ss_pred CeEEEEEeCCC
Q 000635 255 KKILVVLDNLW 265 (1380)
Q Consensus 255 ~~~LlVlDdv~ 265 (1380)
..-.+++|-..
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33477777764
No 357
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.41 E-value=0.1 Score=57.15 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+.|.|+|.||+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998875
No 358
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.33 Score=51.21 Aligned_cols=97 Identities=23% Similarity=0.321 Sum_probs=60.9
Q ss_pred cccccccccchHHHHHHHHHHhc----C---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT----D---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
|...+.++-|-+..+.+|.+... . ...+-|.++|.+|.|||-||++++++.... |=.+ -.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv-----vG 252 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV-----VG 252 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh-----hh
Confidence 33345566777888888877654 1 124568899999999999999999987632 3111 00
Q ss_pred CcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000635 217 TPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWK 266 (1380)
Q Consensus 217 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 266 (1380)
.++ |-+.+|. .....+++++......+..+.+|.++-
T Consensus 253 ----seL---iQkylGd------GpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 253 ----SEL---IQKYLGD------GPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred ----HHH---HHHHhcc------chHHHHHHHHHHHhcCCceEEeehhhh
Confidence 011 2223332 234556666666656778888888753
No 359
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.39 E-value=0.056 Score=57.41 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARR 199 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~ 199 (1380)
.++++|+|+.|.||||+.+.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998853
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=94.37 E-value=0.095 Score=44.77 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=19.6
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+.+++.|.|++|.|||+++.+.+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346788999999999966555555543
No 361
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.23 Score=62.29 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=68.2
Q ss_pred cccchHHHHHHHHHHhcC------C--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 156 AFESRLSTLKSIRNALTD------P--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
.++|.++++..+.+.+.. . ......+.|+.|+|||-||++++..+- +..+..+-++.+.... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------h
Confidence 467888888888888751 1 345788999999999999999999885 3456666666554222 2
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 228 AEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
.+..+.+ ++--..+...++.+.+++..-.+|+||||+..
T Consensus 634 skligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222322 22122233456777787666778889999866
No 362
>PRK06851 hypothetical protein; Provisional
Probab=94.34 E-value=0.45 Score=54.24 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 173 DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 173 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
.+-.+++.|.|++|+||||++++++.....+ -++..++-|...+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dPds 256 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDPDS 256 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Confidence 3445789999999999999999999998754 466666666655544
No 363
>COG4240 Predicted kinase [General function prediction only]
Probab=94.33 E-value=0.22 Score=50.66 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=56.9
Q ss_pred CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC-----CccccchHHHHHHH
Q 000635 173 DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL-----TLREESESRRASSL 247 (1380)
Q Consensus 173 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l 247 (1380)
.++.-+++|.|+-|+||||++..+++.+..+.- ..+...+..+-+-...-...++++... ..++..+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 455669999999999999999999999987643 467777776665555555566666422 12344555566667
Q ss_pred HHHHHcCC
Q 000635 248 YERLKKEK 255 (1380)
Q Consensus 248 ~~~l~~~~ 255 (1380)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776554
No 364
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.32 E-value=0.13 Score=56.04 Aligned_cols=56 Identities=27% Similarity=0.218 Sum_probs=42.2
Q ss_pred ccccccchHHHHHH---HHHHhcCC--CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccE
Q 000635 153 GYEAFESRLSTLKS---IRNALTDP--NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDA 208 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~---l~~~l~~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 208 (1380)
...+|||..++-+. +++++..+ ..+.|.++|++|.|||+||..+++.+...-+|..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 34678997665432 45555543 3478999999999999999999999987777744
No 365
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.32 E-value=0.37 Score=52.79 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc-------
Q 000635 165 KSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE------- 237 (1380)
Q Consensus 165 ~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------- 237 (1380)
++..+++...+..+|.|.|.+|+|||||+..+.+..... . .++.+. .+..+..+ ...++..+.....
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~C 166 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGC 166 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCC
Confidence 334455556778899999999999999999999987643 2 222222 22222222 1223444433111
Q ss_pred cchHHHHHHHHHHHHcCCeEEEEEeCCCC
Q 000635 238 ESESRRASSLYERLKKEKKILVVLDNLWK 266 (1380)
Q Consensus 238 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 266 (1380)
..+...+...+..+.....=++|+++|..
T Consensus 167 hl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 167 HLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 11233344445555544446788999875
No 366
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.27 E-value=0.28 Score=48.61 Aligned_cols=116 Identities=23% Similarity=0.259 Sum_probs=59.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEE---EEcCCCcCHHHHHHHHH----HHhCCC--ccccchHH---HH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAF---SEVSQTPDIKNIQGEIA----EKLGLT--LREESESR---RA 244 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~~i~----~~l~~~--~~~~~~~~---~~ 244 (1380)
..|-|++..|.||||+|...+-+....+ + .+.+ +..........++..+- .+.+.. .......+ .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4688899999999999999888876432 2 2333 33332333333333330 000110 00011111 11
Q ss_pred HH----HHHHHHcCCeEEEEEeCCCCc-----cchhhhhcCCCCCCCCCeEEEEEecchH
Q 000635 245 SS----LYERLKKEKKILVVLDNLWKS-----LDLETTIGIPYGDDHKGCKVLLTTRDRS 295 (1380)
Q Consensus 245 ~~----l~~~l~~~~~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~ilvTtR~~~ 295 (1380)
.. ..+.+..+.-=|||||++-.. .+.+. +...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~-v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEE-VVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHH-HHHHHHcCCCCCEEEEECCCCC
Confidence 22 222333344559999997533 22333 2223333455678999999863
No 367
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.27 E-value=0.038 Score=54.78 Aligned_cols=24 Identities=46% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+|.+.|++|+||||+|++++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987765
No 368
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.27 E-value=0.2 Score=55.05 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=30.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
..++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 4689999999999999999987775422 24577888764
No 369
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.22 E-value=0.39 Score=44.93 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=31.5
Q ss_pred ccchHHHHHHHH----HHhcC---CCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 157 FESRLSTLKSIR----NALTD---PNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 157 ~~gR~~~l~~l~----~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
++|..-+.+.+. +.+.+ ..+-|++.+|++|+|||.+|+.+++..-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 445544444444 44433 3345889999999999999999999843
No 370
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.08 Score=51.89 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.8
Q ss_pred cCCCeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 172 TDPNVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 172 ~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
...+..+|.++|.+|.||||+|.++++.+...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34556799999999999999999999998864
No 371
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.16 E-value=0.13 Score=58.94 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhcCC--------------CeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 156 AFESRLSTLKSIRNALTDP--------------NVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~~--------------~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.++.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778888877776554421 1357899999999999999999999863
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.16 E-value=0.04 Score=51.54 Aligned_cols=28 Identities=43% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccE
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDA 208 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 208 (1380)
|.|+|.+|+||||+|++++.... ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE
Confidence 67999999999999999999987 34643
No 373
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.16 E-value=0.081 Score=53.86 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
..+|+|-||=|+||||||+.++++.... ++.=.+.+.+-+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 3689999999999999999999999733 2222334444444554444
No 374
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.041 Score=51.91 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=29.0
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKN 222 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (1380)
+-|.|+|.||+||||+|.+++....- -|+++++-.....
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~ 46 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENN 46 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhc
Confidence 46899999999999999999966552 3677665443333
No 375
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.12 E-value=0.081 Score=59.13 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=40.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.+++.+.|.||+||||+|.+.+-.....+ ..+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999888887654 44888888887777776654
No 376
>PRK08233 hypothetical protein; Provisional
Probab=94.11 E-value=0.04 Score=57.34 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+|+|.|.+|+||||+|..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998875
No 377
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.08 E-value=0.062 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.|.|.|++|+||||+|+.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 378
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.02 E-value=0.28 Score=55.40 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=26.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS 215 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 215 (1380)
+++.|++|+||||+++.+++.......+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 6799999999999999999988632222 24444443
No 379
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0075 Score=60.20 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=18.4
Q ss_pred ccccCEEEeccCcCcccccchHHHhhcccccEEEEecccCcce
Q 000635 1221 FRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCRAMTE 1263 (1380)
Q Consensus 1221 ~~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 1263 (1380)
+++++.|.+.+|..+.+-....+.+-.++|+.|+|++|+.|.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3344444444454444432222223334444444444444433
No 380
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.00 E-value=0.38 Score=48.27 Aligned_cols=117 Identities=24% Similarity=0.183 Sum_probs=61.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccE-EEEEEcCCCcCHHHHHHHHH---HHhCCC--ccccc---hHHHHHHH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDA-VAFSEVSQTPDIKNIQGEIA---EKLGLT--LREES---ESRRASSL 247 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~---~~l~~~--~~~~~---~~~~~~~l 247 (1380)
..|-|++..|.||||.|...+-+....+.--. +-|+.-.........+..+. .+.+.. +.... +...+...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 57888888999999999999888764332111 22444442334334433320 001111 11111 11122222
Q ss_pred ----HHHHHcCCeEEEEEeCCCCc-----cchhhhhcCCCCCCCCCeEEEEEecch
Q 000635 248 ----YERLKKEKKILVVLDNLWKS-----LDLETTIGIPYGDDHKGCKVLLTTRDR 294 (1380)
Q Consensus 248 ----~~~l~~~~~~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~ilvTtR~~ 294 (1380)
.+.+..+.-=+||||.+-.. .+.++ +...+.....+..||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~-v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEE-VVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHH-HHHHHHhCCCCCEEEEECCCC
Confidence 33333345559999997432 23333 222333445667899999986
No 381
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.99 E-value=0.25 Score=53.56 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=58.9
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhh--hcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCc-------cccchH---
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAK--EDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTL-------REESES--- 241 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~--- 241 (1380)
+-..++|.|..|+|||+|+..++++.. .+++-+.++++-+.+.. ...++..++...=.... .++...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 345789999999999999999988764 12234678888887554 45666666654321110 011111
Q ss_pred ---HHHHHHHHHHHc--CCeEEEEEeCCCCc
Q 000635 242 ---RRASSLYERLKK--EKKILVVLDNLWKS 267 (1380)
Q Consensus 242 ---~~~~~l~~~l~~--~~~~LlVlDdv~~~ 267 (1380)
.....+.+++.. ++++|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 122345556543 68999999998654
No 382
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.82 Score=52.61 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
.+-+.+.|++|.|||.||+++|-+.... .| -++++. |.....++. ...++.++..-+..+
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~at-ff----~iSass--------------LtsK~~Ge~-eK~vralf~vAr~~q 245 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGAT-FF----NISASS--------------LTSKYVGES-EKLVRALFKVARSLQ 245 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcce-Ee----eccHHH--------------hhhhccChH-HHHHHHHHHHHHhcC
Confidence 4567799999999999999999988743 11 122211 111111111 223444555445568
Q ss_pred eEEEEEeCCCCc
Q 000635 256 KILVVLDNLWKS 267 (1380)
Q Consensus 256 ~~LlVlDdv~~~ 267 (1380)
..++++|+++..
T Consensus 246 PsvifidEidsl 257 (428)
T KOG0740|consen 246 PSVIFIDEIDSL 257 (428)
T ss_pred CeEEEechhHHH
Confidence 889999998643
No 383
>PRK03839 putative kinase; Provisional
Probab=93.90 E-value=0.046 Score=56.66 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999986
No 384
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.87 E-value=0.024 Score=55.66 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 159 SRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 159 gR~~~l~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
|+-..++++.+.+. .....-|.|+|..|+||+++|+.++....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 44444455554443 12234678999999999999998887655
No 385
>PRK15453 phosphoribulokinase; Provisional
Probab=93.86 E-value=0.25 Score=53.52 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc--CHHHHHHHH--HHHh--CCCc--cccchHHHHH
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP--DIKNIQGEI--AEKL--GLTL--REESESRRAS 245 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i--~~~l--~~~~--~~~~~~~~~~ 245 (1380)
.+..+|+|.|.+|+||||+|+++++.++..+ ..+..++..... +..++-..+ ++.- +.+. ++..+-+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3457999999999999999999998775321 124445444322 322332222 1222 2233 3445555666
Q ss_pred HHHHHHHc
Q 000635 246 SLYERLKK 253 (1380)
Q Consensus 246 ~l~~~l~~ 253 (1380)
..++.+++
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 66667664
No 386
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.86 E-value=0.085 Score=67.03 Aligned_cols=180 Identities=18% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHh-hh-cCC------------ccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRA-KE-DNI------------FDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREES 239 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~-~~-~~~------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (1380)
.+.++++|+|+.|.||||+.+.+.... .. .+. |+.+ +..+....++.+-+..+. .
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS----------~ 388 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFS----------G 388 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChHhHHhhhhhHHH----------H
Confidence 344799999999999999999987762 21 111 1111 111111111111111100 0
Q ss_pred hHHHHHHHHHHHHcCCeEEEEEeCCCCccch---hhh---hcCCCCCCCCCeEEEEEecchHHHHhhCCCceeeCCCCCH
Q 000635 240 ESRRASSLYERLKKEKKILVVLDNLWKSLDL---ETT---IGIPYGDDHKGCKVLLTTRDRSVLLSMGSKENFPIGVLNE 313 (1380)
Q Consensus 240 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~~---~~~~~~~~~~~~~ilvTtR~~~v~~~~~~~~~~~l~~L~~ 313 (1380)
.......+...+ ..+-|+++|.....-+. ..+ +...+ ...|+.+|+||....+.........+.-..+..
T Consensus 389 ~m~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~ 464 (771)
T TIGR01069 389 HMKNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVLF 464 (771)
T ss_pred HHHHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEE
Confidence 111122232222 47899999998654221 111 11111 235788999999987755322211111111111
Q ss_pred H-HHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcCChhHHHHHHHHh
Q 000635 314 Q-EAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQEL 373 (1380)
Q Consensus 314 ~-~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l 373 (1380)
+ +... +..+.....+. ...|-.|++++ |+|-.|.--|..+......++..++.++
T Consensus 465 d~~~l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 465 DEETLS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred cCCCCc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 1111 11111111111 13477888776 7887777777776555444566666655
No 387
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.85 E-value=0.23 Score=53.32 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=44.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC--HHHHHHHHHHH----hCCCc--cccchHHHHHHHHH
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD--IKNIQGEIAEK----LGLTL--REESESRRASSLYE 249 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~----l~~~~--~~~~~~~~~~~l~~ 249 (1380)
+|+|.|.+|+||||+|.++.+.++..+ ..+..++...... -...-..+... .+.+. ++..+-+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999998886432 1244455433222 22222222222 23333 44455666777777
Q ss_pred HHHcC
Q 000635 250 RLKKE 254 (1380)
Q Consensus 250 ~l~~~ 254 (1380)
.++++
T Consensus 79 ~L~~g 83 (277)
T cd02029 79 TYGET 83 (277)
T ss_pred HHHcC
Confidence 77754
No 388
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.83 E-value=0.19 Score=51.72 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
..+|+|+|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999864
No 389
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.82 E-value=0.14 Score=60.96 Aligned_cols=85 Identities=28% Similarity=0.328 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE--SESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1380)
..++.|.|.+|+||||++.+++.....+ -..++|++..+. ..++.. -++.++.+...- ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999999887632 245788886543 333322 255666532110 000113344444544
Q ss_pred CCeEEEEEeCCC
Q 000635 254 EKKILVVLDNLW 265 (1380)
Q Consensus 254 ~~~~LlVlDdv~ 265 (1380)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455678888764
No 390
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.80 E-value=0.51 Score=53.90 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 158 ESRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 158 ~gR~~~l~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+.+...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 455555555555443 12224578999999999999999887654
No 391
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.79 E-value=0.058 Score=57.52 Aligned_cols=27 Identities=37% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHh
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999987
No 392
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.78 E-value=0.2 Score=59.72 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc--chHHHHHHHHHHHHc
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE--SESRRASSLYERLKK 253 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 253 (1380)
..++.|.|.+|+|||||+.+++......+ ..++|++..+. ..++.. -++.++...+.- -.......+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46899999999999999999988775432 35788876543 333322 234455432110 000112344444444
Q ss_pred CCeEEEEEeCCC
Q 000635 254 EKKILVVLDNLW 265 (1380)
Q Consensus 254 ~~~~LlVlDdv~ 265 (1380)
.+.-++|+|.+.
T Consensus 169 ~~~~~vVIDSIq 180 (454)
T TIGR00416 169 ENPQACVIDSIQ 180 (454)
T ss_pred cCCcEEEEecch
Confidence 455577888774
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.77 E-value=0.045 Score=50.83 Aligned_cols=24 Identities=54% Similarity=0.772 Sum_probs=21.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhh
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
|.|+|++|+|||++|..++.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988764
No 394
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.27 Score=59.05 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=92.0
Q ss_pred ccccccchHHHHHHHHH---HhcCCC---------eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCH
Q 000635 153 GYEAFESRLSTLKSIRN---ALTDPN---------VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDI 220 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~---~l~~~~---------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 220 (1380)
...++.|.++..+++.+ .|.++. ++-|.++|++|+|||.||++++....+. | .+.|...-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~F- 219 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDF- 219 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhh-
Confidence 34556787776655554 444332 4568999999999999999999988754 2 12221110
Q ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCcc------------chhhhhcCCC---CC--CCC
Q 000635 221 KNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKSL------------DLETTIGIPY---GD--DHK 283 (1380)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~~~~~~~~~~---~~--~~~ 283 (1380)
-+ +. .|. ...+.+.++..-++.-++.+++|.++... .++..+...+ .. .+.
T Consensus 220 Ve----mf--VGv------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 220 VE----MF--VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred hh----hh--cCC------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 01 10 111 12345566666666678999999876431 1221111111 11 223
Q ss_pred CeEEEEEecchHHHH-----hhCCCceeeCCCCCHHHHHHHHHhhcCCCc--cChhhHHHHHHHHHHhCCChHH
Q 000635 284 GCKVLLTTRDRSVLL-----SMGSKENFPIGVLNEQEAWRLFKLTADDDV--ENRRLKSIATQVAKACGGLPIA 350 (1380)
Q Consensus 284 ~~~ilvTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Pla 350 (1380)
|..|+..|..++|.+ .-.-++.+.++.-+...-.+.++-++.... ..-+ ...|++.+-|.--|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcccc
Confidence 444444555454443 112234566666665666666665552211 1112 23377777666543
No 395
>PTZ00494 tuzin-like protein; Provisional
Probab=93.73 E-value=6 Score=45.24 Aligned_cols=165 Identities=14% Similarity=0.131 Sum_probs=97.1
Q ss_pred cccccccccchHHHHHHHHHHhc---CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHH
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT---DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGE 226 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~l~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (1380)
.+.....++.|+++-..+.+.|. ...+++++++|.-|.||++|.+........ ..++|++.... +-++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHH
Confidence 45566778999888766666664 456789999999999999999988877653 35678887654 45677
Q ss_pred HHHHhCCCccccch--HHHHHHHHHHHH---cCCeEEEEEe--CCCCcc-chhhhhcCCCCCCCCCeEEEEEecchHHHH
Q 000635 227 IAEKLGLTLREESE--SRRASSLYERLK---KEKKILVVLD--NLWKSL-DLETTIGIPYGDDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 227 i~~~l~~~~~~~~~--~~~~~~l~~~l~---~~~~~LlVlD--dv~~~~-~~~~~~~~~~~~~~~~~~ilvTtR~~~v~~ 298 (1380)
+.+.+|.+..+... -+-+.+-...-+ .++.=+||+- +-.+.. -..+.+ .+.....-|.|++----+.+..
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v--aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV--SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH--HHHccchhheeeeechHhhhch
Confidence 88888887543321 112222222221 2344455543 211110 011101 1122334566666443332221
Q ss_pred ---hhCCCceeeCCCCCHHHHHHHHHhhc
Q 000635 299 ---SMGSKENFPIGVLNEQEAWRLFKLTA 324 (1380)
Q Consensus 299 ---~~~~~~~~~l~~L~~~~~~~l~~~~~ 324 (1380)
....-..|-+++++.++|.++.+...
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 11223478899999999999987765
No 396
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.71 E-value=0.26 Score=61.56 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=55.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccc------cchHHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLRE------ESESRRASSLYE 249 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 249 (1380)
.+++-|+|.+|+||||||.+++...... =..++|++..+.++. ..++++|.+... .........+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5689999999999999999877765432 255799998777663 367788876321 122222233333
Q ss_pred HHHcCCeEEEEEeCCC
Q 000635 250 RLKKEKKILVVLDNLW 265 (1380)
Q Consensus 250 ~l~~~~~~LlVlDdv~ 265 (1380)
.+.+++--|||+|-+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 3444567789999875
No 397
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.69 E-value=0.22 Score=53.18 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=71.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC-----CcCHHHHHHHHHHHhCCCcc-------ccchHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ-----TPDIKNIQGEIAEKLGLTLR-------EESESRR 243 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~ 243 (1380)
..+++|+|..|.||||+++.+..-.... .+.+++.-.+ .....+-..++++.+|.... +-+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3589999999999999999998876532 3334433221 22233445666777765421 1122233
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCccch--hhhhcCCCC--CCCCCeEEEEEecchHHHHhhCC
Q 000635 244 ASSLYERLKKEKKILVVLDNLWKSLDL--ETTIGIPYG--DDHKGCKVLLTTRDRSVLLSMGS 302 (1380)
Q Consensus 244 ~~~l~~~l~~~~~~LlVlDdv~~~~~~--~~~~~~~~~--~~~~~~~ilvTtR~~~v~~~~~~ 302 (1380)
.+-.+.+...-++-++|.|.--+..+. ++.+...+. ....|-..++.|.+-.++..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 333344444468889999986554322 110111111 12346678888888877776543
No 398
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.68 E-value=0.51 Score=53.31 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.6
Q ss_pred CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcC
Q 000635 173 DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDN 204 (1380)
Q Consensus 173 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~ 204 (1380)
.++..+|+|.|.+|+||||++..+....+..+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45667999999999999999999999887543
No 399
>PRK00625 shikimate kinase; Provisional
Probab=93.68 E-value=0.052 Score=55.21 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.|.|+||+|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 400
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.66 E-value=0.22 Score=50.42 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=44.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC-CeE
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE-KKI 257 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~ 257 (1380)
+.|.|.+|+|||++|.+++... ...++++.-....+. ++...|.+--..........+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999998762 234666666655543 344444332111111111112223333334321 333
Q ss_pred EEEEeCCC
Q 000635 258 LVVLDNLW 265 (1380)
Q Consensus 258 LlVlDdv~ 265 (1380)
.+++|.+.
T Consensus 76 ~VLIDclt 83 (169)
T cd00544 76 VVLIDCLT 83 (169)
T ss_pred EEEEEcHh
Confidence 79999863
No 401
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.65 E-value=0.12 Score=55.78 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=34.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGL 233 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (1380)
..++.|.|.+|+|||++|.+++.....+ .=..++|++...+. .++.+.+ +.++.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~-~s~g~ 72 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENM-KSFGW 72 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHH-HTTTS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHH-HHcCC
Confidence 3599999999999999999987665322 01457888875543 4444443 24443
No 402
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.64 E-value=0.37 Score=52.71 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTLREESESRRASSLYERLKK 253 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 253 (1380)
+..+++++|.+|+||||++..++.....+. ..+.++++.... ....-+...++.++.......+...+...++.+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 346999999999999999999988875332 346666655332 12222334444555544332333444455555643
Q ss_pred -CCeEEEEEeCCCCc
Q 000635 254 -EKKILVVLDNLWKS 267 (1380)
Q Consensus 254 -~~~~LlVlDdv~~~ 267 (1380)
.+.=++++|.....
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24568889987543
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.61 E-value=0.26 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.+++|.|+.|.|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999988754
No 404
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.52 E-value=0.29 Score=59.37 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=38.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++.|.|++|+|||||+.+++.....+ =..+++++..+ +..++.... +.+|.+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCC
Confidence 4699999999999999999999987543 24567766543 455555553 566654
No 405
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.51 E-value=0.3 Score=51.48 Aligned_cols=87 Identities=24% Similarity=0.461 Sum_probs=54.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC-cCHHHHHHHHHHHhCCC-------ccccchHH------
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT-PDIKNIQGEIAEKLGLT-------LREESESR------ 242 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 242 (1380)
..+.|.|.+|+|||+|+.++++... -+.++++-+.+. ..+.++.+++...-... ..++....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999999985 355577777644 45666666663321111 00111111
Q ss_pred HHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 243 RASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 243 ~~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
....+.+++. +++++|+++||+...
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHHH
Confidence 1123334443 389999999998433
No 406
>PRK04040 adenylate kinase; Provisional
Probab=93.51 E-value=0.066 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=23.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.+|+|+|++|+||||+++.+++...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 407
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.50 E-value=0.33 Score=48.58 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
...++|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999998887
No 408
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.47 E-value=0.29 Score=62.52 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=90.3
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHh--hhc------------CCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRA--KED------------NIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREES 239 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~--~~~------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (1380)
.+.+++.|+|+.+.||||+.+.++-.. ... ..|+.+ +..++...++..-...+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i-~~~ig~~~si~~~lStfS~~--------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEI-FADIGDEQSIEQSLSTFSGH--------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceE-EEecCCccchhhchhHHHHH---------
Confidence 345789999999999999999886542 101 122322 33344333333222222111
Q ss_pred hHHHHHHHHHHHHcCCeEEEEEeCCCCccch---hhh---hcCCCCCCCCCeEEEEEecchHHHHhhCCCceeeCCCCCH
Q 000635 240 ESRRASSLYERLKKEKKILVVLDNLWKSLDL---ETT---IGIPYGDDHKGCKVLLTTRDRSVLLSMGSKENFPIGVLNE 313 (1380)
Q Consensus 240 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~~---~~~~~~~~~~~~~ilvTtR~~~v~~~~~~~~~~~l~~L~~ 313 (1380)
......+...+ ..+-|+++|.....-+. ..+ +...+ ...|+.+|+||...++.........+.-..+..
T Consensus 395 -m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 395 -MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred -HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 11122233333 46779999998654221 111 11111 224778999999988776443322111111111
Q ss_pred -HHHHHHHHhhc-CCCccChhhHHHHHHHHHHhCCChHHHHHHHHHhhcCChhHHHHHHHHh
Q 000635 314 -QEAWRLFKLTA-DDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQEL 373 (1380)
Q Consensus 314 -~~~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l 373 (1380)
++......+.. |... ...|-.|++++ |+|-.|.--|..+.......+.+++.++
T Consensus 470 d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 470 DEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred ecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 11111111111 2211 13377788777 7887777777776555444566666655
No 409
>PHA02774 E1; Provisional
Probab=93.44 E-value=0.15 Score=60.58 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=36.3
Q ss_pred HHHHHHHHhcC-CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 163 TLKSIRNALTD-PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 163 ~l~~l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
-+..+..++.. ++...+.|+|++|+|||.+|..+++-+. -..+.|++...
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 35556666653 3345899999999999999999999875 23466777543
No 410
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.43 E-value=0.18 Score=48.80 Aligned_cols=116 Identities=16% Similarity=0.337 Sum_probs=62.0
Q ss_pred CCCCccEEEeccCCCccccccCchhhhhCCCCccEEEecCccccccc-ccccCCCCCCEEEecCCCCCC--cccccCCcc
Q 000635 526 KCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLP-YSIGLLQNLQTLCLERSTVGD--IAIIGKLKN 602 (1380)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~~~~~lp~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~--~~~i~~L~~ 602 (1380)
.+++|+.+.+.. ... .++...|.++..|+.+.+.++ +..++ ..|.++..|+.+.+.+ .+.. ...+..+.+
T Consensus 10 ~~~~l~~i~~~~-~~~----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK----KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECC-Cee----EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 566788887762 222 266777888888999998875 66664 4567777899999976 4433 356777889
Q ss_pred ccEEEcccCCCccCCh-hhhccccccEEeccCccccccccchhhcCCCCCc
Q 000635 603 LEVLSFLQSDIVMLPK-EIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLE 652 (1380)
Q Consensus 603 L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~ 652 (1380)
|+.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 999998765 665644 56666 888888775 36677777677766653
No 411
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.41 E-value=0.2 Score=58.63 Aligned_cols=46 Identities=28% Similarity=0.204 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhc-------CC---------CeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 156 AFESRLSTLKSIRNALT-------DP---------NVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~-------~~---------~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.++|.++.++.+...+. .. ..+.+.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 37899988887755441 10 124689999999999999999998765
No 412
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.40 E-value=0.16 Score=62.88 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=55.0
Q ss_pred cccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHh
Q 000635 152 KGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKL 231 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (1380)
.-...++|+++.++.+...+.... -+.++|++|+||||+|+.+++..... .|..++++.- ...+..++++.++..+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhh
Confidence 345678999998888887776543 56699999999999999999888643 3333333332 2334556677777776
Q ss_pred CCC
Q 000635 232 GLT 234 (1380)
Q Consensus 232 ~~~ 234 (1380)
+..
T Consensus 91 g~~ 93 (608)
T TIGR00764 91 GRE 93 (608)
T ss_pred chH
Confidence 643
No 413
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.39 E-value=0.25 Score=55.76 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.7
Q ss_pred CCCeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 173 DPNVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 173 ~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
.....+|+|+|++|+||||++..+.......
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3456899999999999999999999987654
No 414
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.38 E-value=0.13 Score=57.18 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=37.0
Q ss_pred cccccchHHHHHH---HHHHhcCCC--eEEEEEEeCCCchHHHHHHHHHHHhhhcCCc
Q 000635 154 YEAFESRLSTLKS---IRNALTDPN--VSIIGVYGMGGIGKTTLAKEVARRAKEDNIF 206 (1380)
Q Consensus 154 ~~~~~gR~~~l~~---l~~~l~~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f 206 (1380)
..++||..++.+. +++++...+ .+.|.+.|++|.|||+||..+++.+..+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4678997665443 445555443 4799999999999999999999999866555
No 415
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.37 E-value=0.32 Score=49.65 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=61.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhh---cCC---c--cEEEEEEcCCCcCHHHHHHHHHHHhCCCcc--cc-----c-
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKE---DNI---F--DAVAFSEVSQTPDIKNIQGEIAEKLGLTLR--EE-----S- 239 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~---~~~---f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~-----~- 239 (1380)
..+++|+|+.|+|||||.+.+...... ... | ..+.|+. + .+.++.+++... .. +
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 358999999999999999988632110 000 0 0122321 1 345666665421 11 1
Q ss_pred hHHHHHHHHHHHHcCC--eEEEEEeCCCCccchhh--hhcCCCCC-CCCCeEEEEEecchHHHHhhCCCceeeC
Q 000635 240 ESRRASSLYERLKKEK--KILVVLDNLWKSLDLET--TIGIPYGD-DHKGCKVLLTTRDRSVLLSMGSKENFPI 308 (1380)
Q Consensus 240 ~~~~~~~l~~~l~~~~--~~LlVlDdv~~~~~~~~--~~~~~~~~-~~~~~~ilvTtR~~~v~~~~~~~~~~~l 308 (1380)
.....-.+...+. .+ +-++++|+-...-+... .+...+.. ...|..||++|.+..... . .++++.+
T Consensus 91 Gq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~-~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1122233444444 35 67888898754422111 01111111 124667889998886653 2 4444444
No 416
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.37 E-value=0.27 Score=57.78 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCC-------ccccch------
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLT-------LREESE------ 240 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 240 (1380)
+-..++|.|.+|+|||||+.++++..... +-+.++++-+.+.. ...++...+...=... ..+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 34689999999999999999999888743 56778887776544 4556666654432111 001111
Q ss_pred HHHHHHHHHHHHc--CCeEEEEEeCCCCc
Q 000635 241 SRRASSLYERLKK--EKKILVVLDNLWKS 267 (1380)
Q Consensus 241 ~~~~~~l~~~l~~--~~~~LlVlDdv~~~ 267 (1380)
...+..+.+++.. ++++|+++|++...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1123345566542 79999999999654
No 417
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.37 E-value=0.066 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+.++|+|.|++|+||||+|+.++..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998763
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.36 E-value=0.28 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
++++|+|+.|.||||+.+.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998655
No 419
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.33 E-value=0.3 Score=57.07 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=59.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCC-------ccccch------
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLT-------LREESE------ 240 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 240 (1380)
+-..++|.|.+|+|||+|+.++++.... .+-+.++++-+.... ...++...+...=... ..++..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 3458999999999999999999888653 234778888776554 4556666654431111 001111
Q ss_pred HHHHHHHHHHHHc--CCeEEEEEeCCCCc
Q 000635 241 SRRASSLYERLKK--EKKILVVLDNLWKS 267 (1380)
Q Consensus 241 ~~~~~~l~~~l~~--~~~~LlVlDdv~~~ 267 (1380)
...+..+.+++.. ++++|+++||+...
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1223455666653 79999999999655
No 420
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.33 E-value=0.33 Score=52.91 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=34.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCC----------ccEEEEEEcCCCcC-HHHHHHHHHHHh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNI----------FDAVAFSEVSQTPD-IKNIQGEIAEKL 231 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~----------f~~~~wv~~~~~~~-~~~~~~~i~~~l 231 (1380)
+..|+|++|+|||+||.+++........ -..|++++...+.+ +.+=+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999887653221 12366777655432 333333444433
No 421
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.29 E-value=0.079 Score=56.28 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998765
No 422
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.28 E-value=0.083 Score=53.66 Aligned_cols=43 Identities=26% Similarity=0.204 Sum_probs=33.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPD 219 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 219 (1380)
..++.+.|+.|+|||.+|+++++.+.. +.....+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 357899999999999999999999874 2345667777765444
No 423
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.26 E-value=0.33 Score=51.77 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHHHhhhhhccccchhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhchhcHHHHHHHHHHHHHHHHHHhhhcc
Q 000635 15 WLAAPIGRQVSYLSKSNYTSSFENLKKEVEKLRGERESMRQRVEEA-ERNRQEIEKNVEKWLERVNKIIDETVKITG 90 (1380)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a-~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~ 90 (1380)
+.++.+.+.+..+. +.|.+.+.-++.+++-++.+++.+|.|++.. +.. ....+.......++...||++|.++|
T Consensus 296 GyVdFlL~NLkdfq-~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~-~nkh~~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQ-GRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEP-HNKHDTNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred cHHHHHHhhHHHHh-ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-chhhhhhhhHHHHHHHHHhheeeeee
Confidence 45677777777766 4667778899999999999999999999986 443 33344599999999999999999987
No 424
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.24 E-value=0.63 Score=50.42 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=37.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..++.|.|.+|+||||+|.+++.....+ -..++|++.... ..++... +++++..
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~~ 73 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGMD 73 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCCC
Confidence 4689999999999999999987654322 356888887443 3444333 4555543
No 425
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=1.8 Score=47.75 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCe-EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 164 LKSIRNALTDPNV-SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 164 l~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
-+.+...+..++. ....++|+.|+||+++|..++...-
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 4556666665553 4788999999999999999998875
No 426
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.13 E-value=0.065 Score=59.11 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCcccc-chHHH
Q 000635 165 KSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREE-SESRR 243 (1380)
Q Consensus 165 ~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~ 243 (1380)
..+++.+...+ +-|.++|+.|+|||++++.+........ | .+.-++.+...+...+++.+-..+....... ..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 34455554454 4568999999999999999887654322 2 2344555554443333322211111000000 00
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 244 ASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 244 ~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
..+++.++.+||+.-+
T Consensus 97 --------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp --------ESSSEEEEEEETTT-S
T ss_pred --------CCCcEEEEEecccCCC
Confidence 1268899999998643
No 427
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.10 E-value=0.077 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999985
No 428
>PRK01184 hypothetical protein; Provisional
Probab=93.10 E-value=0.4 Score=49.87 Aligned_cols=23 Identities=52% Similarity=0.810 Sum_probs=18.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
.+|+|+|++|+||||+|+ ++...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 479999999999999987 44443
No 429
>PRK05973 replicative DNA helicase; Provisional
Probab=93.09 E-value=0.33 Score=51.85 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=34.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
..++.|.|.+|+|||++|.+++.....+ =..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 3589999999999999999998876533 245677766543 34444443
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.08 E-value=0.73 Score=52.07 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=29.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV 214 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 214 (1380)
+..+++++|++|+||||++..++......+ ..|..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 457999999999999999999999887432 24555554
No 431
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.023 Score=56.87 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=51.9
Q ss_pred CcccccceeecccccccccccccccCccCCCCccEEEEecCCCCCccCchhhhhhcccccEEEEecCcch
Q 000635 818 DAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDELTNIFWLSNTKCLHKLERIAVIDCKKM 887 (1380)
Q Consensus 818 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 887 (1380)
..+++++.|.+.+|..+.+++.+.+.. .+++|+.|+|++|+.+++- .+..+..+++|+.|.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 346778888888888888888766553 7899999999999998864 3455677888888888775544
No 432
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.069 Score=52.33 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.8
Q ss_pred EEEEEeCCCchHHHHHHHHH
Q 000635 178 IIGVYGMGGIGKTTLAKEVA 197 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~ 197 (1380)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.99 E-value=0.37 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
.+|+|+|+.|+|||||...+.--.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999998876543
No 434
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.98 E-value=0.15 Score=57.23 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=34.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (1380)
|++.+.|-||+||||+|.+.+-....++ ..+.-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 5889999999999999999988877543 3366667666655555443
No 435
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.98 E-value=0.17 Score=51.40 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=59.1
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc--CHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP--DIKNIQGEIAEKLGLTLREESESRRASSLYERLKKE 254 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 254 (1380)
.+++|.|+.|.|||||.+.++.... ...+.+++.-.... +..+. ..+.++...+-.......-.+.+.+. .
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~-~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA-R 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh-c
Confidence 5899999999999999999987654 23455554321111 11111 11111111111111222233444454 5
Q ss_pred CeEEEEEeCCCCccchhh--hhcCCCC-CCCCCeEEEEEecchHHHH
Q 000635 255 KKILVVLDNLWKSLDLET--TIGIPYG-DDHKGCKVLLTTRDRSVLL 298 (1380)
Q Consensus 255 ~~~LlVlDdv~~~~~~~~--~~~~~~~-~~~~~~~ilvTtR~~~v~~ 298 (1380)
++-++++|+-...-+... .+...+. ....|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 677888998765432211 0111111 1123667888988876444
No 436
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.93 E-value=0.48 Score=48.16 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=60.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhc-C--Ccc---EEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHH
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKED-N--IFD---AVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYER 250 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~-~--~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~ 250 (1380)
.+++|+|+.|.|||||++.++...... + .++ .+.++.-........+...+... ....-.......-.+.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~lara 105 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998875422 1 111 12232211111111222222210 011111122223344455
Q ss_pred HHcCCeEEEEEeCCCCccchhh--hhcCCCCCCCCCeEEEEEecchHHHHhhCCCceeeC
Q 000635 251 LKKEKKILVVLDNLWKSLDLET--TIGIPYGDDHKGCKVLLTTRDRSVLLSMGSKENFPI 308 (1380)
Q Consensus 251 l~~~~~~LlVlDdv~~~~~~~~--~~~~~~~~~~~~~~ilvTtR~~~v~~~~~~~~~~~l 308 (1380)
+. .++-++++|+-...-+... .+...+... +..||++|.+..... ..++++.+
T Consensus 106 l~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 106 LL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 54 5677888998654422111 011111111 356888888776543 23444443
No 437
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.92 E-value=0.12 Score=54.10 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=28.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEE
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVA 210 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~ 210 (1380)
...|.++||+|.||||..++++.....++....++
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 45788999999999999999999988665443343
No 438
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.88 E-value=0.11 Score=50.73 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=28.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
++|.|+|..|+|||||++.+.+.+..+ .+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998754 355555555544
No 439
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.85 E-value=0.42 Score=47.19 Aligned_cols=100 Identities=27% Similarity=0.292 Sum_probs=54.3
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
.+++|.|..|.|||||++.++..... ..+.+|+.-.. .++.-..-.......-.+.+.+. .++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~-~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLL-ENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHh-cCC
Confidence 58999999999999999999876542 23444432100 00000000011122233444554 466
Q ss_pred EEEEEeCCCCccc------hhhhhcCCCCCCCCCeEEEEEecchHHHHh
Q 000635 257 ILVVLDNLWKSLD------LETTIGIPYGDDHKGCKVLLTTRDRSVLLS 299 (1380)
Q Consensus 257 ~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~ilvTtR~~~v~~~ 299 (1380)
-++++|+-...-+ +.+.+... +..||++|.+.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHH
Confidence 7889998754422 22212221 2468888887765543
No 440
>PRK14529 adenylate kinase; Provisional
Probab=92.82 E-value=0.32 Score=51.52 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=45.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhhcCCccE--EEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCe
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKEDNIFDA--VAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKK 256 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 256 (1380)
|.|.|++|+||||+|+.++..+... +.+. ++.-.+..........+.++.+-.. ..+.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l----vpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL----VPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc----chHHHHHHHHHHHHhccCC
Confidence 7889999999999999999988632 2221 1111222222233333444332111 1222233445556654324
Q ss_pred EEEEEeCCCCc
Q 000635 257 ILVVLDNLWKS 267 (1380)
Q Consensus 257 ~LlVlDdv~~~ 267 (1380)
.=+|||+.-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 55889988543
No 441
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.81 E-value=0.19 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHHh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
+..|+|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999998888877776
No 442
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.81 E-value=0.3 Score=56.73 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=31.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCC
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQT 217 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 217 (1380)
+++.|.|.+|+|||.||..++.+.........+.+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 58999999999999999999999822234555666665543
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.81 E-value=0.13 Score=56.88 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=41.7
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
+..+++.|+|.+|+|||++|.+++...... ...++||+.... ..++.+... +++.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~-~~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR-SFGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH-HcCCC
Confidence 345799999999999999999999998744 788999997654 334444433 35544
No 444
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.80 E-value=0.27 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+++|.|+.|.|||||.+.++....
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999988754
No 445
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.78 E-value=0.26 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
++.|.|.+|+||||+|..++.+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 689999999999999999987753
No 446
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.72 E-value=0.38 Score=56.08 Aligned_cols=89 Identities=18% Similarity=0.325 Sum_probs=53.8
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCc-------cccch------
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTL-------REESE------ 240 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~------ 240 (1380)
....++|.|..|+|||||++.+++... .+.++++-+.... ...++....+..-+... .+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999887764 3455555555443 34455544433322210 01111
Q ss_pred HHHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 241 SRRASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 241 ~~~~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
...+..+.+++. +++++|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112234455553 479999999999654
No 447
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.67 E-value=0.37 Score=52.94 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.|.++|++|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998864
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.63 E-value=0.1 Score=52.77 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHhhh
Q 000635 179 IGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 179 i~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
|.|+|.+|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999854
No 449
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.63 E-value=0.21 Score=47.79 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.+|.+.|.-|+||||+++.+++....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 58999999999999999999998764
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.62 E-value=0.29 Score=56.78 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=53.4
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCCc-------cccchH------
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLTL-------REESES------ 241 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 241 (1380)
...++|.|..|+|||||++.++.... .+.++.+-+.+.. ...++...++..-+... .++...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 45899999999999999999886433 3566666665443 34555555543322110 011111
Q ss_pred HHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 242 RRASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 242 ~~~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
..+..+.+++. +++++|+++||+...
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 12233445553 379999999998654
No 451
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=1 Score=49.94 Aligned_cols=27 Identities=44% Similarity=0.529 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.+-|.++|++|.|||-+|++++.+...
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCC
Confidence 467899999999999999999999873
No 452
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.60 E-value=0.41 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.+++|.|+.|.|||||.+.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 5899999999999999999987654
No 453
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.60 E-value=0.44 Score=55.42 Aligned_cols=46 Identities=28% Similarity=0.180 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhc-------C-------C----CeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 156 AFESRLSTLKSIRNALT-------D-------P----NVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~-------~-------~----~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46899998888866551 1 1 124799999999999999999998765
No 454
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.59 E-value=0.25 Score=48.44 Aligned_cols=36 Identities=17% Similarity=-0.100 Sum_probs=28.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEE
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSE 213 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 213 (1380)
.+.|.|+.|+|||+.+..++.+.........++|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 468999999999999999988877544456677775
No 455
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.53 E-value=0.51 Score=55.35 Aligned_cols=93 Identities=20% Similarity=0.357 Sum_probs=58.5
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc-CHHHHHHHHHHHhCCC-------ccccchH----
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP-DIKNIQGEIAEKLGLT-------LREESES---- 241 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 241 (1380)
..-..++|.|.+|+|||||+..++....... -+.++++-+.+.. .+.++..++...=+.. ..+....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3346899999999999999999988876432 2466777765444 4556666665432111 0111111
Q ss_pred --HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000635 242 --RRASSLYERLK--KEKKILVVLDNLWKS 267 (1380)
Q Consensus 242 --~~~~~l~~~l~--~~~~~LlVlDdv~~~ 267 (1380)
..+..+.+++. +++++||++|++...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12334555553 479999999999654
No 456
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.53 E-value=0.33 Score=54.15 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=41.9
Q ss_pred cccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHH
Q 000635 156 AFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNI 223 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (1380)
.|+=+.+....+..++..+ +.|.|.|++|+||||+|++++...... .+.|......+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhc
Confidence 4555555666777777543 369999999999999999999998722 234555544444333
No 457
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.52 E-value=0.099 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988764
No 458
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.48 E-value=0.15 Score=57.72 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=38.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHh
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
+...++|.++.++.+.-.+.+.+..=+.+.|.+|+||||+|+.++.-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 356789999998887765544443458899999999999999998876
No 459
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.48 E-value=0.0057 Score=61.89 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred hCCCCccEEEecCcccccccccccCCCCCCEEEecCCCCCC-cccccCCccccEEEcccCCCccCChhhhccccccEEec
Q 000635 553 TGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD-IAIIGKLKNLEVLSFLQSDIVMLPKEIGQLTKLRLLDL 631 (1380)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 631 (1380)
..++...+||++.|++..+-..|+.+..|.-||++.|.+.. |..++.+..++++++..|+...+|.+.+++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34555566666666655555555555566666666655555 55566666666666666666666666666666666666
Q ss_pred cCcc
Q 000635 632 TDCF 635 (1380)
Q Consensus 632 ~~~~ 635 (1380)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5543
No 460
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.47 E-value=0.68 Score=57.29 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=38.6
Q ss_pred cccccccchHHHHHHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 152 KGYEAFESRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 152 ~~~~~~~gR~~~l~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.....++|+...++++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 344578999888888887764 22234578999999999999999988754
No 461
>PRK06217 hypothetical protein; Validated
Probab=92.42 E-value=0.095 Score=54.40 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=27.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhhcCCc--cEEEEE
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKEDNIF--DAVAFS 212 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv 212 (1380)
.|.|.|.+|+||||+|+++++.... .+| |.++|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5899999999999999999998763 233 556664
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.42 E-value=0.091 Score=53.99 Aligned_cols=23 Identities=48% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 463
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.41 E-value=0.38 Score=51.62 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+++|.|+.|+|||||.+.++.-.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 464
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.40 E-value=0.25 Score=56.65 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhcC--------------CCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 156 AFESRLSTLKSIRNALTD--------------PNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 156 ~~~gR~~~l~~l~~~l~~--------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.++|.++.++.+..++.. ...+-|.++|++|+|||++|+.++....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478888888888776632 0135789999999999999999999875
No 465
>PRK13768 GTPase; Provisional
Probab=92.36 E-value=0.54 Score=51.50 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=27.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV 214 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 214 (1380)
.+++|.|+||+||||++..++......+ ..++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEEC
Confidence 5789999999999999999998886532 23444444
No 466
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.35 E-value=0.092 Score=52.52 Aligned_cols=24 Identities=46% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
++.|+|++|+||||+|+.+.....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 378999999999999999988753
No 467
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.33 E-value=0.25 Score=51.72 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=25.7
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
++.+++.|.|++|+||||+++.+.......
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 444789999999999999999998888764
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=92.32 E-value=0.37 Score=56.14 Aligned_cols=89 Identities=13% Similarity=0.271 Sum_probs=52.9
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC-CCcCHHHHHHHHHHHhCCC-------ccccch------
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS-QTPDIKNIQGEIAEKLGLT-------LREESE------ 240 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~------ 240 (1380)
+...++|.|..|+|||||+..++.... .+.++...+. +..++.++..+........ ..+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 345899999999999999998887543 3443344443 3334555555555433221 001111
Q ss_pred HHHHHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 241 SRRASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 241 ~~~~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
...+..+.+++. +++++||++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112334445553 379999999998655
No 469
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.26 E-value=0.1 Score=52.04 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+|.|.|++|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.23 E-value=0.15 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhc
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKED 203 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~ 203 (1380)
..++++|+|..|+|||||+..+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45699999999999999999999988753
No 471
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.22 E-value=0.35 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
..++|+|+.|.|||||.+.+..-.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998844
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.22 E-value=0.2 Score=56.88 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHh
Q 000635 154 YEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRA 200 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~ 200 (1380)
...++|.++.+..+.-.+.++...-+.|.|..|+||||+++.++.-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578999999888777777666678899999999999999998776
No 473
>PRK13947 shikimate kinase; Provisional
Probab=92.22 E-value=0.11 Score=53.38 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999986
No 474
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.21 E-value=0.4 Score=49.05 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+++|.|+.|.|||||++.++.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35899999999999999999887654
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.15 E-value=0.64 Score=56.40 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=37.1
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCC
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
..+++.|.|++|+||||+|.+++..-..+ .=..++||+..+ +..++.+. ++.+|.+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~-~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN-ARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH-HHHcCCC
Confidence 35799999999999999999997664321 114577888753 44444444 3455543
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.15 E-value=0.12 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.5
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.+++|+|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988865
No 477
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.13 E-value=0.35 Score=61.73 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHHhc--CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC
Q 000635 154 YEAFESRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ 216 (1380)
Q Consensus 154 ~~~~~gR~~~l~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 216 (1380)
...++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 4468898888877765554 2233468899999999999999998865421 12344555543
No 478
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.24 Score=53.06 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=44.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEK 255 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 255 (1380)
+..+.|||++|.|||-+|+.++....+. | +.+..+. +... ..| .....+++.+++..+..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n--f---l~v~ss~------lv~k---yiG------EsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN--F---LKVVSSA------LVDK---YIG------ESARLIRDMFRYAREVI 225 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc--e---EEeeHhh------hhhh---hcc------cHHHHHHHHHHHHhhhC
Confidence 4589999999999999999999998754 2 1122111 0000 011 12233455555555567
Q ss_pred eEEEEEeCCCC
Q 000635 256 KILVVLDNLWK 266 (1380)
Q Consensus 256 ~~LlVlDdv~~ 266 (1380)
++.|.+|+++.
T Consensus 226 pciifmdeiDA 236 (388)
T KOG0651|consen 226 PCIIFMDEIDA 236 (388)
T ss_pred ceEEeehhhhh
Confidence 79999999864
No 479
>PRK13949 shikimate kinase; Provisional
Probab=92.08 E-value=0.12 Score=52.62 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
.|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999886
No 480
>PRK14530 adenylate kinase; Provisional
Probab=92.05 E-value=0.12 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.6
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+.|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998875
No 481
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.03 E-value=0.18 Score=57.20 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=42.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 153 GYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 153 ~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
....++|.++.+..|.-...++...-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566899999999998888888877788999999999999999988764
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.02 E-value=1.1 Score=46.51 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.2
Q ss_pred CCeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 174 PNVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 174 ~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
....++.|.|.+|+||||+|+.+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999988763
No 483
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.00 E-value=0.52 Score=55.56 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=57.7
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc--cEEEEEEcCCCc-CHHHHHHHHHHHhCCCc-------cccch----
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF--DAVAFSEVSQTP-DIKNIQGEIAEKLGLTL-------REESE---- 240 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~---- 240 (1380)
.-..++|.|..|+|||||+..+++.....+.+ ..++++-+.+.. .+.++...+...=+... .+...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34589999999999999999999877532111 145666665443 45666666654322110 01111
Q ss_pred --HHHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000635 241 --SRRASSLYERLK--KEKKILVVLDNLWKS 267 (1380)
Q Consensus 241 --~~~~~~l~~~l~--~~~~~LlVlDdv~~~ 267 (1380)
...+..+.+++. +++++||++||+...
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112344666766 489999999998655
No 484
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.98 E-value=1.6 Score=48.95 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=56.1
Q ss_pred ccccchHHHHHHHHHHhc------CCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEc-CCCc------CHH
Q 000635 155 EAFESRLSTLKSIRNALT------DPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEV-SQTP------DIK 221 (1380)
Q Consensus 155 ~~~~gR~~~l~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~------~~~ 221 (1380)
..|+|-++.++++++.+. +.+.+++.+.|+.|.||||||..+.+-.+.- .+|.-. +... =..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-----~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-----PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-----EEEEecCCccccChhhhCCH
Confidence 368999999999999885 4567899999999999999999998888732 333221 1111 134
Q ss_pred HHHHHHHHHhCCCcccc
Q 000635 222 NIQGEIAEKLGLTLREE 238 (1380)
Q Consensus 222 ~~~~~i~~~l~~~~~~~ 238 (1380)
++-..+.+.++....+.
T Consensus 136 ~~r~~~~~~~~~~i~g~ 152 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGE 152 (358)
T ss_pred hHHHHHHHHhCcccCCC
Confidence 55566777777755444
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=0.36 Score=49.40 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=64.5
Q ss_pred HHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhc-CCccE--EEEEEcCCCcCHHHH-----HHHHHHHhCCCcccc
Q 000635 167 IRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKED-NIFDA--VAFSEVSQTPDIKNI-----QGEIAEKLGLTLREE 238 (1380)
Q Consensus 167 l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~--~~wv~~~~~~~~~~~-----~~~i~~~l~~~~~~~ 238 (1380)
+++.+-..+..-..|.|++|+||||+.+.+++-.... +.|-. +.-++-+. .+..- +..+.+...+-
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers--EIag~~~gvpq~~~g~R~dVl---- 201 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS--EIAGCLNGVPQHGRGRRMDVL---- 201 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc--hhhccccCCchhhhhhhhhhc----
Confidence 4444444444457899999999999999999887643 12322 22232211 11000 01111111111
Q ss_pred chHHHHHHHHHHHHcCCeEEEEEeCCCCccchhhhhcCCCCCCCCCeEEEEEecchHH
Q 000635 239 SESRRASSLYERLKKEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSV 296 (1380)
Q Consensus 239 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~ilvTtR~~~v 296 (1380)
+..-...-+...+..-.+=++|+|.+...++..+ +... -..|.+++.|..--.+
T Consensus 202 d~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A-~~ta---~~~GVkli~TaHG~~i 255 (308)
T COG3854 202 DPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALA-ILTA---LHAGVKLITTAHGNGI 255 (308)
T ss_pred ccchHHHHHHHHHHhcCCcEEEEeccccHHHHHH-HHHH---HhcCcEEEEeeccccH
Confidence 1111223344444445777999999998877666 3332 3457777777664433
No 486
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.97 E-value=0.12 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=22.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 178 IIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 178 vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
+|+|.|.+|+||||+|..++.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998763
No 487
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.95 E-value=0.14 Score=53.34 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
..+|.|.|.+|+||||+|+.++.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999999864
No 488
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.95 E-value=0.31 Score=56.00 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHH
Q 000635 157 FESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (1380)
++|+++.+..+...+..++ -+.+.|++|+|||++|+.++..... ..+++.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 7788888887777766554 4789999999999999999999872 23556666666666654443
No 489
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=91.92 E-value=0.17 Score=61.75 Aligned_cols=51 Identities=31% Similarity=0.495 Sum_probs=41.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhh
Q 000635 151 IKGYEAFESRLSTLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAK 201 (1380)
Q Consensus 151 ~~~~~~~~gR~~~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~ 201 (1380)
+.....++|++..++.+...+......-|.|+|++|+|||++|+.+++...
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 345567899999999999887655556678999999999999999987543
No 490
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.91 E-value=0.29 Score=56.94 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCeEEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 163 TLKSIRNALTDPNVSIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 163 ~l~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
.++.+++.+.......+.|.|+||+|||++.+++.+..+.
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4555556665556678899999999999999999998874
No 491
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=91.91 E-value=0.088 Score=49.10 Aligned_cols=84 Identities=13% Similarity=0.252 Sum_probs=44.8
Q ss_pred EEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHhCCCccccchHHHHHHHHHHHHcCCeEEE
Q 000635 180 GVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKLGLTLREESESRRASSLYERLKKEKKILV 259 (1380)
Q Consensus 180 ~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Ll 259 (1380)
.|.|-+|+|||+|+..++.+ +|....-.+.+-++.++.+--. -..+.+..-+....++.+.+...+-++..-++
T Consensus 12 lIigDsgVGKssLl~rF~dd-----tFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADD-----TFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HeecCCcccHHHHHHHHhhc-----ccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 37889999999999998876 3433222222111111100000 00011111122334556666666666888888
Q ss_pred EEeCCCCccc
Q 000635 260 VLDNLWKSLD 269 (1380)
Q Consensus 260 VlDdv~~~~~ 269 (1380)
|+=||.+.+.
T Consensus 86 vVYDVTn~ES 95 (198)
T KOG0079|consen 86 VVYDVTNGES 95 (198)
T ss_pred EEEECcchhh
Confidence 8888877643
No 492
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=2.2 Score=51.85 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=91.1
Q ss_pred ccchHHHHHHHHHHhcC---------CCeEEEEEEeCCCchHHHHHHHHHHHhhhcCCc--cEEEEEEcCCCcCHHHHHH
Q 000635 157 FESRLSTLKSIRNALTD---------PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIF--DAVAFSEVSQTPDIKNIQG 225 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l~~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~ 225 (1380)
..+++..+..+.+.+.. .-..++.++|.+|+||||+++.++...... -| ||.-.++.+...+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h-~~evdc~el~~~s~~~~------ 475 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH-LLEVDCYELVAESASHT------ 475 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc-eEeccHHHHhhcccchh------
Confidence 34667777777777751 124689999999999999999999998732 11 2111111111111
Q ss_pred HHHHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc-------cc------hhhhhc-CCCCCCCCCeEEEEEe
Q 000635 226 EIAEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS-------LD------LETTIG-IPYGDDHKGCKVLLTT 291 (1380)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-------~~------~~~~~~-~~~~~~~~~~~ilvTt 291 (1380)
.......+.+-+.-.+.+|.+-|++-. ++ ++.++. ..+....++.-++.||
T Consensus 476 ---------------etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 476 ---------------ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred ---------------HHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 112233333333345556666554311 11 111111 1122233444444444
Q ss_pred cc-hHHHHhhC--CCceeeCCCCCHHHHHHHHHhhcCCCccChhhHHHHHHHHHHhCCChH
Q 000635 292 RD-RSVLLSMG--SKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPI 349 (1380)
Q Consensus 292 R~-~~v~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 349 (1380)
.+ +.+...+. ..+.++++.++++|-.++|+.......-..+ .-.+++++++.|.-.
T Consensus 541 ~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~--v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 541 SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQD--VNLKQLARKTSGFSF 599 (953)
T ss_pred cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchH--HHHHHHHHhcCCCCH
Confidence 43 22222211 2357899999999999999988844333222 225677777777654
No 493
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.86 E-value=0.21 Score=51.86 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcC
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVS 215 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 215 (1380)
.+++.|+|+.|+|||||+..+..... ..|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 36899999999999999999999887 457666666654
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.82 E-value=0.63 Score=48.14 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=62.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCC--CcCHHHHH------HHHHHHhCCCccc------c-ch
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQ--TPDIKNIQ------GEIAEKLGLTLRE------E-SE 240 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~------~~i~~~l~~~~~~------~-~~ 240 (1380)
..+++|.|..|.|||||++.++..... ..+.+++.-.. ..+..... .++++.+++.... - ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 358999999999999999999876542 34444432111 11111111 1245555543211 1 11
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCccchhh--hhcCCCCC-CCC-CeEEEEEecchHHHHh
Q 000635 241 SRRASSLYERLKKEKKILVVLDNLWKSLDLET--TIGIPYGD-DHK-GCKVLLTTRDRSVLLS 299 (1380)
Q Consensus 241 ~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~--~~~~~~~~-~~~-~~~ilvTtR~~~v~~~ 299 (1380)
....-.+.+.+. ..+-++++|+-...-+.+. .+...+.. ... +..||++|.+......
T Consensus 102 ~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 122233444554 5778899998754422111 01111111 112 5678888888765443
No 495
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.80 E-value=0.61 Score=54.26 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=58.4
Q ss_pred CeEEEEEEeCCCchHHHHHHHHHHHhhhcC--Ccc---------EEEEEEcCCCcCHHHHHHHHHHHhC-CCc-------
Q 000635 175 NVSIIGVYGMGGIGKTTLAKEVARRAKEDN--IFD---------AVAFSEVSQTPDIKNIQGEIAEKLG-LTL------- 235 (1380)
Q Consensus 175 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~------- 235 (1380)
+-..++|.|.+|+|||||+.++++...... -.| .++++-+.......+.+.+.+..-+ +..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 346899999999999999999998865100 012 5667777766555555555555444 221
Q ss_pred cccchH------HHHHHHHHHHH--cCCeEEEEEeCCCCc
Q 000635 236 REESES------RRASSLYERLK--KEKKILVVLDNLWKS 267 (1380)
Q Consensus 236 ~~~~~~------~~~~~l~~~l~--~~~~~LlVlDdv~~~ 267 (1380)
.++... ..+..+.+++. +++++|+++||+...
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 011111 12334566666 479999999998654
No 496
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.76 E-value=0.47 Score=55.41 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=51.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCcCHHHHHHHHHHHh-----CCCccc-cch------HHH
Q 000635 176 VSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTPDIKNIQGEIAEKL-----GLTLRE-ESE------SRR 243 (1380)
Q Consensus 176 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~-~~~------~~~ 243 (1380)
...++|+|..|+|||||++.++.... ...++++..-.+..++.++........ +.-... +.. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35899999999999999988876543 223455554334445555444333322 111111 111 112
Q ss_pred HHHHHHHHH-cCCeEEEEEeCCCCc
Q 000635 244 ASSLYERLK-KEKKILVVLDNLWKS 267 (1380)
Q Consensus 244 ~~~l~~~l~-~~~~~LlVlDdv~~~ 267 (1380)
+..+.+++. +++++|+++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 233445553 379999999998654
No 497
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.74 E-value=0.2 Score=56.00 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=30.2
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhhcCCccEEEEEEcCCCc
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKEDNIFDAVAFSEVSQTP 218 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 218 (1380)
+.|+|+|-||+||||+|..++.....++ + .|.-++.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q~ 40 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPKA 40 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 4789999999999999999999988654 2 35555554433
No 498
>PRK13975 thymidylate kinase; Provisional
Probab=91.72 E-value=0.15 Score=53.81 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=23.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHHhhh
Q 000635 177 SIIGVYGMGGIGKTTLAKEVARRAKE 202 (1380)
Q Consensus 177 ~vi~i~G~~G~GKTtLa~~~~~~~~~ 202 (1380)
..|+|.|+.|+||||+|+.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999863
No 499
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.71 E-value=0.098 Score=29.88 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=6.0
Q ss_pred cccEEEcccCCCccCC
Q 000635 602 NLEVLSFLQSDIVMLP 617 (1380)
Q Consensus 602 ~L~~L~L~~~~l~~lp 617 (1380)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 500
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.70 E-value=0.51 Score=50.61 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=53.4
Q ss_pred ccchHHHHHHHHHHh----cCC---CeEEEEEEeCCCchHHHHHHHHHHHhhhcCC-ccEEE-EEEcCCCcCHHHHHHHH
Q 000635 157 FESRLSTLKSIRNAL----TDP---NVSIIGVYGMGGIGKTTLAKEVARRAKEDNI-FDAVA-FSEVSQTPDIKNIQGEI 227 (1380)
Q Consensus 157 ~~gR~~~l~~l~~~l----~~~---~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~-wv~~~~~~~~~~~~~~i 227 (1380)
+.|..-..+.++..+ .++ ++-+++.+|.+|+||.-.|+.+++.....+- =+.|- ++..-+-++...+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i---- 159 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI---- 159 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH----
Confidence 345444444444444 332 3448999999999999999999998754321 01111 1110011111110
Q ss_pred HHHhCCCccccchHHHHHHHHHHHHcCCeEEEEEeCCCCc
Q 000635 228 AEKLGLTLREESESRRASSLYERLKKEKKILVVLDNLWKS 267 (1380)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 267 (1380)
+.-..+....+.+.+..-+|-|+|+|+|+..
T Consensus 160 ---------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 ---------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ---------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0011222334444454568999999999876
Done!