Query 000635
Match_columns 1380
No_of_seqs 521 out of 6510
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 16:35:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000635.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_408-412//hhsearch_pdb/000635hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 393.8 21.2 309 158-486 131-472 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 381.8 28.6 642 552-1361 73-767 (768)
3 3rgz_A Protein brassinosteroid 1.0 1 1 364.0 30.0 119 1162-1298 625-743 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 354.3 25.3 311 150-485 119-452 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 328.9 32.6 175 510-701 8-188 (680)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 328.5 36.5 172 505-692 24-203 (680)
7 1vt4_I APAF-1 related killer D 1.0 1 1 326.3 17.0 280 157-478 130-436 (1221)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 303.3 38.2 175 509-700 15-195 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 302.3 35.9 178 509-701 14-198 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 298.8 32.1 138 547-699 27-168 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=393.79 Aligned_cols=309 Identities=14% Similarity=0.120 Sum_probs=244.7
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEEEEECCCCHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCC--CHHHHHHHHHHH
Q ss_conf 3459999999999269---9917999990898338999999999--95230986589999948986--989999999999
Q 000635 158 ESRLSTLKSIRNALTD---PNVSIIGVYGMGGIGKTTLAKEVAR--RAKEDNIFDAVAFSEVSQTP--DIKNIQGEIAEK 230 (1380)
Q Consensus 158 ~gR~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 230 (1380)
+||+.+++++.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ +...++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHC
Q ss_conf 399741--------2213899999999997497-4999992999962513242687899999719999816657887409
Q 000635 231 LGLTLR--------EESESRRASSLYERLKKEK-KILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSMG 301 (1380)
Q Consensus 231 l~~~~~--------~~~~~~~~~~l~~~l~~~~-~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 301 (1380)
++.... ..........+.+.+. ++ ||||||||||+.+.+ .+. ..+||+||||||+..++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~------~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA------QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH------HHTTCEEEEEESBGGGGGGCC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CCC------CCCCCEEEEECCCHHHHHHCC
T ss_conf 853755345555331469999999999976-898489999799971441-543------269988999749779999708
Q ss_pred -CCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HCCCCCC
Q ss_conf -98404078899899999998643997567246999999999929971999999999603993699999998-3198865
Q 000635 302 -SKENFPIGVLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQE-LRRPSME 379 (1380)
Q Consensus 302 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~w~~~l~~-l~~~~~~ 379 (1380)
...++++++|+.+++|+||.++++....++++++++++|+++|+|+||||+++|+.++.+.+ +|...+.. +...
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~--- 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR--- 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH---
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH-HHHHHHHHHHHCC---
T ss_conf 897389899989899999999874489985568999999999959983999999998443448-9998757876136---
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHH-----------HCCCCCCCCCHHHHHHHHHHH--CCCCCCCCHHHHHHHH
Q ss_conf 547882122404987660689313899998-----------615799997937899999960--4431020068889899
Q 000635 380 SFQGVPKEAYSTIELSYKYLEGEKLKKMFL-----------LCSLMPNPCYTLDLLKYCMGL--GMFQRVHKLEDARTKM 446 (1380)
Q Consensus 380 ~~~~~~~~i~~~l~~sy~~L~~~~lk~~~~-----------~~s~fp~~~~~~~l~~~w~~~--g~~~~~~~~~~~~~~~ 446 (1380)
....+.+++.+||+.||++ +|.||+ |||+||+++.+. ++.|+|+ ||+.........++.+
T Consensus 359 ----~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 ----GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp ----CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHH
T ss_pred ----CHHHHHHHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHH
T ss_conf ----4777898975162022679-99997526522336743235608997666--5331101355002677899999999
Q ss_pred HHHHHHHHHCCCEEEEC--CCCCEEECHHHHHHHHHHHHCCC
Q ss_conf 99999996536212308--99949961999999999740376
Q 000635 447 HAWVHELVDSCLLLVDD--SGDNFSMHDVVRDVAISIACRDE 486 (1380)
Q Consensus 447 ~~~l~~L~~~~li~~~~--~~~~~~mHdlv~~~~~~~~~~e~ 486 (1380)
+ ++++|+++||++... ...+|+|||+||++|++++.+++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9-9999987588367147980499967699999999988989
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=381.84 Aligned_cols=642 Identities=14% Similarity=0.061 Sum_probs=331.8
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CC--CCCCCCCCCEEECCCCCCC-CCCHHH-HCCCC
Q ss_conf 609987509994184124466332477888899802778899--51--0167754558872368785-488422-11265
Q 000635 552 FTGMRKLRVVHFSGMRLASLPYSIGLLQNLQTLCLERSTVGD--IA--IIGKLKNLEVLSFLQSDIV-MLPKEI-GQLTK 625 (1380)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~Ls~~~i~~--~~--~i~~L~~L~~L~L~~~~l~-~lp~~i-~~L~~ 625 (1380)
+..++.|++++++.+.+..+|..++.+++|++|+|++|.+.. |. .++++++|++|++++|.+. ..|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 73168022467868886787033245788998989898578707896787278899989896882677479778563889
Q ss_pred CCEEECCCCCCCCCCCCHH---HCCCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 5588434754644214012---1289878689843551000351147644566825421899986999873189888875
Q 000635 626 LRLLDLTDCFKLKVIATNV---LSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDILPEG 702 (1380)
Q Consensus 626 L~~L~L~~~~~l~~~p~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 702 (1380)
|++|++++|. +...+... ++++++|++|++++|.+.. ...+..+++|++|+++.+........
T Consensus 153 L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~~~~l~~L~~L~Ls~n~l~~~~~~ 218 (768)
T 3rgz_A 153 LEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISG-------------DVDVSRCVNLEFLDVSSNNFSTGIPF 218 (768)
T ss_dssp CSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEES-------------CCBCTTCTTCCEEECCSSCCCSCCCB
T ss_pred CCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCCCCC-------------CCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9989897983-588587155664358988989897880346-------------57845478689898928827887711
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 232234256553147778886211023347898621244443028886328987-8853334864012776045788223
Q 000635 703 FFTKKLARFKISVGDESFSTPFYFVESWFSSRPNFMIGKHESLRTLKLKLSSKP-IGSKELQGVNNVEYLCLDELPGVKT 781 (1380)
Q Consensus 703 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~ 781 (1380)
+ ..++.|+.|+++.+... .....+..+++|+.|.+.++.....
T Consensus 219 l------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 219 L------------------------------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262 (768)
T ss_dssp C------------------------------------TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES
T ss_pred C------------------------------------CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 1------------------------------------2699999897948858781657774488889898988866571
Q ss_pred HHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 50112435879864788305998741136877765775656435411464341000146667667888558999248997
Q 000635 782 VLFELDTKGFSQLKHLHIQNNPDLLCIVDSRDRETYDAFPLLESLTLQNLIRLERTCMDRLKVESFNELKIIKVENCDEL 861 (1380)
Q Consensus 782 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~i~~c~~L 861 (1380)
.+. ..+++|+.|++.++.....++.. ....+++|+.|.+.++.-...++. .+..+++|+.|++.+|...
T Consensus 263 ~~~----~~l~~L~~L~L~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 263 IPP----LPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CCC----CCCTTCCEEECCSSEEEESCCCC----SCTTCTTCSEEECCSSEEEECCCG---GGGGCTTCCEEECCSSEEE
T ss_pred CCC----CCCCCCCEEECCCCCCCCCCCHH----HHHHCCCCCEEECCCCCCCCCCCH---HHHCCCCCCEEECCCCCCC
T ss_conf 672----43687898979178557725888----884468688998968967784236---7755877667789788525
Q ss_pred CCCCCHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85474024421065429999217654667502886455885531211234-41345518886732236566789999997
Q 000635 862 TNIFWLSNTKCLHKLERIAVIDCKKMEEVFAIGGEADVGNKNAIEKIEFA-QLKSLSLGMLPKVTNFFREVKTPPASPNR 940 (1380)
Q Consensus 862 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~L~~~~~~~~~~~~~~~~ 940 (1380)
..+ +...+..+++|+.|++++|.....++. .+..++ +|+.|+++++.-...++.....
T Consensus 332 ~~i-p~~~l~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~------- 390 (768)
T 3rgz_A 332 GEL-PMDTLLKMRGLKVLDLSFNEFSGELPE-------------SLTNLSASLLTLDLSSNNFSGPILPNLCQ------- 390 (768)
T ss_dssp EEC-CHHHHTTCTTCCEEECCSSEEEECCCT-------------THHHHTTTCSEEECCSSEEEEECCTTTTC-------
T ss_pred CCC-CHHHHHCCCCCCEEECCCCCCCCCCCH-------------HHHHHHCCCCEEECCCCCCCCCCCHHHHH-------
T ss_conf 737-978872488887884847843762309-------------89863227719986278747876766653-------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 65432234411012224134166564101343443113578879888999883399764663410115512574111466
Q 000635 941 RESEEDELDTSIQLLNEKVVLPNLEALELRDINIDKIWHYNELPAMFPGSQSLTRLILWDCNKLKYIFSATMIRSFEQLQ 1020 (1380)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 1020 (1380)
..+++|+.|++++|.+... .|..+..+++|++|++++|. ++... +..+..+++|+
T Consensus 391 ------------------~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~-l~~~~-p~~l~~l~~L~ 445 (768)
T 3rgz_A 391 ------------------NPKNTLQELYLQNNGFTGK-----IPPTLSNCSELVSLHLSFNY-LSGTI-PSSLGSLSKLR 445 (768)
T ss_dssp ------------------STTCCCCEEECCSSEEEEE-----CCGGGGGCTTCCEEECCSSE-EESCC-CGGGGGCTTCC
T ss_pred ------------------CCCCCCCEEECCCCCCCCC-----CCHHHHCCCCCCEEECCCCC-CCCCC-CHHHHCCCCCC
T ss_conf ------------------3247761898977846542-----48777568987989895884-66854-67774499889
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCC
Q ss_conf 89994034432101223432357898712135436100233523332368877678863321111034542000134321
Q 000635 1021 RLEISNCMVLQEIISKDRAEADQRTTPCFVFPRLTTLILLGLPELKCFYPGMHTSEWPALKILNVIFPNLEDLALSGEDV 1100 (1380)
Q Consensus 1021 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~c~~L~~~~~~~~~~~~~~L~~l~~~~~~L~~L~l~~~~~ 1100 (1380)
.|++++|.....+.. . ...+++|+.|++.++ +++...+..... +++|+.|++++|.+
T Consensus 446 ~L~L~~n~l~~~~p~-~----------~~~l~~L~~L~L~~N-~l~~~~p~~l~~-----------l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQ-E----------LMYVKTLETLILDFN-DLTGEIPSGLSN-----------CTNLNWISLSNNRL 502 (768)
T ss_dssp EEECCSSCCCSCCCG-G----------GGGCTTCCEEECCSS-CCCSCCCGGGGG-----------CTTCCEEECCSSCC
T ss_pred EEECCCCCCCCCCCH-H----------HCCCCCCEEEEECCC-CCCCCCCHHHHC-----------CCCCCEEECCCCCC
T ss_conf 898978815471897-8----------828777329990199-513758878816-----------99899897539951
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEECCC--
Q ss_conf 213056778664434139995078884452488966046765997044407996269621122321223203574056--
Q 000635 1101 EMILMGDFPHHLFGCLKQVAVATDESECFPLGLLERFLNMEDLYLRACSYKEIFSSNDEYLEKDVRNFALIKRLHLVE-- 1178 (1380)
Q Consensus 1101 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~~c~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~-- 1178 (1380)
....+..+ ..+++|+.|++..|.+....+..+..+++|+.|++++|.+...+|... .....+..+.+..
T Consensus 503 ~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 503 TGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-------FKQSGKIAANFIAGK 573 (768)
T ss_dssp CSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG-------GTTTTCBCCSTTCSC
T ss_pred CCCCCHHH--HCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHH-------HCCCCHHHHHCCCCC
T ss_conf 89687688--568999989897894337488777088989989898884688279578-------604212232013454
Q ss_pred ---------------------------------CCCC-------CCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCC
Q ss_conf ---------------------------------2244-------402478881133230010576503435320257764
Q 000635 1179 ---------------------------------LDDL-------KHLWKPNSKLEHILQYLEKLFVSYCQSLLILLPSAS 1218 (1380)
Q Consensus 1179 ---------------------------------c~~L-------~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~ 1218 (1380)
+..+ ..+....+.....+++|+.|++++ +++....|..+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l 652 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPKEI 652 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCC-CCCCCCCCHHH
T ss_conf 21111344432222332221001355632320023211001133100462743340335665797858-80155587788
Q ss_pred CCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 21246687986347686322114799640156488794366731564057777889975310164152441458886301
Q 000635 1219 ISFRNLTELQVTNCKKLINLVTSSVAKSLVGLLMLNIYGCRAMTEVVTGDENGAANPKEEIVFTKLKSISLVDLDSLTSF 1298 (1380)
Q Consensus 1219 ~~~~~L~~L~i~~C~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 1298 (1380)
..+++|+.|++++ ++++...+ ..++.+++|+.|++++|.-...+|. ....+++|+.|++++++--..+
T Consensus 653 ~~l~~L~~L~Ls~-N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~----------~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 653 GSMPYLFILNLGH-NDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ----------AMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGCTTCCEEECCS-SCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCG----------GGGGCCCCSEEECCSSEEEEEC
T ss_pred HCCCCCCEEECCC-CCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCH----------HHHCCCCCCEEECCCCCCCCCC
T ss_conf 4141578784868-80388789-6784777899898978802386886----------7757887897879688155608
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 379820128975589990569865458997569996128928884102899986799899787
Q 000635 1299 CSANYTFNFPSLQDLEVIGCPKMTIFTTVELCTPPRVNVWYGEGNLWRSDDGGVNTTIQHLHD 1361 (1380)
Q Consensus 1299 ~~~~~~~~~~sL~~L~i~~Cp~l~~l~~~~~~~~~l~~~~~~~~~~w~~~~~~~~~~i~~~~~ 1361 (1380)
|.+... .++....+.++|.+...| +..+..+.++.|++ ++|++.+++
T Consensus 721 P~~~~~---~~~~~~~~~gN~~Lcg~~--------l~~C~~~~~~~~~~-----~~~~~~~~~ 767 (768)
T 3rgz_A 721 PEMGQF---ETFPPAKFLNNPGLCGYP--------LPRCDPSNADGYAH-----HQRSHHHHH 767 (768)
T ss_dssp CSSSSG---GGSCGGGGCSCTEEESTT--------SCCCCSCC--------------------
T ss_pred CCCHHH---CCCCHHHHCCCCHHCCCC--------CCCCCCCCCCCCCC-----CCCCCCCCC
T ss_conf 996010---248977756983210887--------76788876688898-----887656678
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=363.96 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=87.9
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCH
Q ss_conf 22321223203574056224440247888113323001057650343532025776421246687986347686322114
Q 000635 1162 EKDVRNFALIKRLHLVELDDLKHLWKPNSKLEHILQYLEKLFVSYCQSLLILLPSASISFRNLTELQVTNCKKLINLVTS 1241 (1380)
Q Consensus 1162 ~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~p~~~~~~~~L~~L~i~~C~~l~~l~~~ 1241 (1380)
+..+..+++|+.|+++++. +. ...+..+..+++|+.|++++ +.+....|..+..+++|+.|++++ ++++...+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~-l~---g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~-N~l~g~ip- 697 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNM-LS---GYIPKEIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSS-NKLDGRIP- 697 (768)
T ss_dssp CCSCSSSBCCCEEECCSSC-CB---SCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCS-SCCEECCC-
T ss_pred CHHHHCCCCCCEEECCCCC-CC---CCCCHHHHCCCCCCEEECCC-CCCCCCCCHHHHCCCCCCEEECCC-CCCCCCCC-
T ss_conf 4334033566579785880-15---55877884141578784868-803887896784777899898978-80238688-
Q ss_pred HHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 799640156488794366731564057777889975310164152441458886301
Q 000635 1242 SVAKSLVGLLMLNIYGCRAMTEVVTGDENGAANPKEEIVFTKLKSISLVDLDSLTSF 1298 (1380)
Q Consensus 1242 ~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 1298 (1380)
..+..+++|+.|++++|+-...+|... .+.++....+.++|.|...
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~~-----------~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEMG-----------QFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSSS-----------SGGGSCGGGGCSCTEEEST
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCH-----------HHCCCCHHHHCCCCHHCCC
T ss_conf 677578878978796881556089960-----------1024897775698321088
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=354.31 Aligned_cols=311 Identities=21% Similarity=0.330 Sum_probs=238.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEEECCCCHHHHHHHHHHHHHHH-CC-CCCEEEEEECCCCCC--HHHH
Q ss_conf 34664333345999999999926--999179999908983389999999999523-09-865899999489869--8999
Q 000635 150 SIKGYEAFESRLSTLKSIRNALT--DPNVSIIGVYGMGGIGKTTLAKEVARRAKE-DN-IFDAVAFSEVSQTPD--IKNI 223 (1380)
Q Consensus 150 ~~~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~~~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~ 223 (1380)
.++....|+||+++++++.++|. ++..++|+|+||||+||||||+++|++.+. .. .++.++|+++++... ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 79998641257999999999986135887779999189888889999986075678862788179999788572679999
Q ss_pred HHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHH
Q ss_conf 9999999399741-----2213899999999997497--49999929999625132426878999997199998166578
Q 000635 224 QGEIAEKLGLTLR-----EESESRRASSLYERLKKEK--KILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSV 296 (1380)
Q Consensus 224 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~--~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 296 (1380)
+..++..++.... ..........+...+ .++ |+||||||||+...|.. + .+|++||||||++.+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~-~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKA-F-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTT-T-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEEECCCCHHHHHH-H-------CCCCEEEEECCCHHH
T ss_conf 999999865530333478877789999999997-3567878999956799778876-3-------689789999277899
Q ss_pred HHH-HCCCCEEECCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 874-09984040788-9989999999864399756724699999999992997199999999960399369999999831
Q 000635 297 LLS-MGSKENFPIGV-LNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKKSVPEWENALQELR 374 (1380)
Q Consensus 297 ~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~~~~~w~~~l~~l~ 374 (1380)
+.. +.....+++++ |+.+++++||...++.. .++.++++++|+++|+|+||||+++|++++.+. ..|...+..+.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 876348843798258888788999999865798--134838899999984997799999999862480-57999999986
Q ss_pred CCCCCCCC----CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 98865547----882122404987660689313899998615799997937--899999960443102006888989999
Q 000635 375 RPSMESFQ----GVPKEAYSTIELSYKYLEGEKLKKMFLLCSLMPNPCYTL--DLLKYCMGLGMFQRVHKLEDARTKMHA 448 (1380)
Q Consensus 375 ~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~lk~~~~~~s~fp~~~~~~--~l~~~w~~~g~~~~~~~~~~~~~~~~~ 448 (1380)
........ .....+..++.+||+.|+++ +|+||+|||+||+++.+. .++..|.++ ++.+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~ 413 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVED 413 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCC------------HHHHHH
T ss_conf 50443034655644677999999899867999-99999972813799751899999885898------------889999
Q ss_pred HHHHHHHCCCEEEECCCC--CEEECHHHHHHHHHHHHCC
Q ss_conf 999996536212308999--4996199999999974037
Q 000635 449 WVHELVDSCLLLVDDSGD--NFSMHDVVRDVAISIACRD 485 (1380)
Q Consensus 449 ~l~~L~~~~li~~~~~~~--~~~mHdlv~~~~~~~~~~e 485 (1380)
++++|++++|++....++ +|+|||++|++++..+.++
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 999997446338963798118996689999987450678
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=328.86 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=122.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf 99931688655899788998658992258896545568436660998750999418412446-63324778888998027
Q 000635 510 AISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLER 588 (1380)
Q Consensus 510 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~p~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~ 588 (1380)
.+..++..+..+|.... +++++|+++++.... ++...|.+++.|++|++++|.+..+ |..++.+++|++|++++
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred EEECCCCCCCCCCCCCC-CCCCEEECCCCCCCC----CCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 44877798052641248-887688898997787----5978871787675887889964856977874066768888999
Q ss_pred CCCCC-CC-CCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCEEE
Q ss_conf 78899-51-0167754558872368785488-422112655588434754644214012128987868984355100035
Q 000635 589 STVGD-IA-IIGKLKNLEVLSFLQSDIVMLP-KEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEV 665 (1380)
Q Consensus 589 ~~i~~-~~-~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 665 (1380)
|.+.. |. .++++++|++|++++|.+..+| ..++++++|++|++++|. +...+.+.++++++|++|++++|.+.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--- 158 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ--- 158 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC---
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC---
T ss_conf 85675685453038888989898996685396674156788889898995-24667211124556777974588436---
Q ss_pred ECCCCCCCCCCHHHHC--CCCCCCEEEEEECCCCCCCC
Q ss_conf 1147644566825421--89998699987318988887
Q 000635 666 ETRGSEKRSASLDEFL--HLPRLTTLEIEVRNDDILPE 701 (1380)
Q Consensus 666 ~~~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~~~~~~ 701 (1380)
......+. .+++|+.|+++.+....++.
T Consensus 159 --------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 159 --------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp --------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred --------CCCHHHHHCCCCCCCCEEECCCCCCCCCCH
T ss_conf --------529788624466632179888982565581
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=328.51 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=81.7
Q ss_pred CCCEEEEEECCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCC-CCCCCCCC
Q ss_conf 3661699931688655899--78899865899225889654556843666099875099941841244663-32477888
Q 000635 505 KKECYAISVRDSSIHELPE--GLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASLPY-SIGLLQNL 581 (1380)
Q Consensus 505 ~~~~r~lsl~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~p~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 581 (1380)
..+++++.+.++.+..++. ...+++|++|+++++.... ++...|.+++.|++|++++|.+..+|. .|+.+++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC----CCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 8887688898997787597887178767588788996485----697787406676888899985675685453038888
Q ss_pred CEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCHHHC--CCCCCCEEEC
Q ss_conf 899802778899--51016775455887236878548-842211265558843475464421401212--8987868984
Q 000635 582 QTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIVML-PKEIGQLTKLRLLDLTDCFKLKVIATNVLS--SLTRLEALYM 656 (1380)
Q Consensus 582 r~L~Ls~~~i~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~--~L~~L~~L~l 656 (1380)
++|++++|.+.. +..++++++|++|++++|.+... |..+.++++|++|++++|. +..++...++ .+++|+.|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEEC
T ss_pred CEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCCCEEEC
T ss_conf 989898996685396674156788889898995246672111245567779745884-3652978862446663217988
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEEEE
Q ss_conf 355100035114764456682542189998699987
Q 000635 657 HNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIE 692 (1380)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 692 (1380)
++|.+. ...+..+..+++|+.|.+.
T Consensus 179 ~~n~l~-----------~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 179 SSNQIK-----------EFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp TTCCCC-----------CBCTTGGGGSSEECEEECT
T ss_pred CCCCCC-----------CCCHHHHHHHHHHHHHHCC
T ss_conf 898256-----------5581555322344554305
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=326.34 Aligned_cols=280 Identities=21% Similarity=0.200 Sum_probs=218.0
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 33459999999999269-99179999908983389999999999523098658-99999489869899999999993997
Q 000635 157 FESRLSTLKSIRNALTD-PNVSIIGVYGMGGIGKTTLAKEVARRAKEDNIFDA-VAFSEVSQTPDIKNIQGEIAEKLGLT 234 (1380)
Q Consensus 157 ~~gR~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (1380)
.+||+.+++++.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred ---CC---C------CCHHHHHHHHHHHHH--CCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf ---41---2------213899999999997--497499999299996251324268789999971999981665788740
Q 000635 235 ---LR---E------ESESRRASSLYERLK--KEKKILVVLDNLWKSLDLETTIGIPYGDDHKGCKVLLTTRDRSVLLSM 300 (1380)
Q Consensus 235 ---~~---~------~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 300 (1380)
.. + .........+.+.+. .++|+||||||||+.+.|+. + + +||+||||||++.++..+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~-f----~---pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-F----N---LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHH-H----H---SSCCEEEECSCSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH-H----C---CCEEEEEECCCHHHHHHC
T ss_conf 7210220013467999999999999999985047887998718681899986-4----7---982999944373799866
Q ss_pred CCCCEEECC------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CHHHHHHHHHH
Q ss_conf 998404078------8998999999986439975672469999999999299719999999996039--93699999998
Q 000635 301 GSKENFPIG------VLNEQEAWRLFKLTADDDVENRRLKSIATQVAKACGGLPIALTTIAKALRKK--SVPEWENALQE 372 (1380)
Q Consensus 301 ~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~l~~~--~~~~w~~~l~~ 372 (1380)
.....+.++ +|+.+|+|+||.+..+.. .. ++..++ |+|+||||+++|+.++.+ +..+|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--HH---HHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--89---999999---6989999999999984889979998669---
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH-HHHHHHCCCCCCCCCHH--HHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 31988655478821224049876606893138-99998615799997937--8999999604431020068889899999
Q 000635 373 LRRPSMESFQGVPKEAYSTIELSYKYLEGEKL-KKMFLLCSLMPNPCYTL--DLLKYCMGLGMFQRVHKLEDARTKMHAW 449 (1380)
Q Consensus 373 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l-k~~~~~~s~fp~~~~~~--~l~~~w~~~g~~~~~~~~~~~~~~~~~~ 449 (1380)
....+..++.+||+.|+++ . |+||++||+||+++.+. .++.+|+++|. +.+..+
T Consensus 351 -----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~ 407 (1221)
T 1vt4_I 351 -----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVV 407 (1221)
T ss_dssp -----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-----------HHHHHH
T ss_conf -----------8618999999999848899-99999999717799998779999987667788-----------999999
Q ss_pred HHHHHHCCCEEEECCCCCEEECHHHHHHH
Q ss_conf 99996536212308999499619999999
Q 000635 450 VHELVDSCLLLVDDSGDNFSMHDVVRDVA 478 (1380)
Q Consensus 450 l~~L~~~~li~~~~~~~~~~mHdlv~~~~ 478 (1380)
+++|+++||++..+...+|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 99999619889868999898609999985
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=303.32 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=117.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEEC
Q ss_conf 699931688655899788998658992258896545568436660998750999418412446-6332477888899802
Q 000635 509 YAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLE 587 (1380)
Q Consensus 509 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~p~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls 587 (1380)
+.+...+..+..+|... .++++.|+++++.... ++...|.++++|++|++++|.+..+ |..|+.+++|++|+++
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCCCCCCCCC-CCCCCEEECCCCCCCC----CCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECC
T ss_conf 23777779806286778-9867589815873471----796672567665289788983552485113684336764488
Q ss_pred CCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCEE
Q ss_conf 778899--51016775455887236878548-842211265558843475464421401212898786898435510003
Q 000635 588 RSTVGD--IAIIGKLKNLEVLSFLQSDIVML-PKEIGQLTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWE 664 (1380)
Q Consensus 588 ~~~i~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 664 (1380)
+|.+.. |..++++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 166 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-- 166 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC--
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC--
T ss_conf 985654586552344215376521267665781012237822389887983-41147654568765687776568445--
Q ss_pred EECCCCCCCCCCHHHHCCCCCCC--EEEEEECCCCCCC
Q ss_conf 51147644566825421899986--9998731898888
Q 000635 665 VETRGSEKRSASLDEFLHLPRLT--TLEIEVRNDDILP 700 (1380)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~ 700 (1380)
...+..++.+++|+ .|+++++....++
T Consensus 167 ---------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 167 ---------YLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp ---------EECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred ---------CCCHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf ---------54965633221564038966798147548
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=302.31 Aligned_cols=178 Identities=17% Similarity=0.276 Sum_probs=123.7
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEEC
Q ss_conf 699931688655899788998658992258896545568436660998750999418412446-6332477888899802
Q 000635 509 YAISVRDSSIHELPEGLKCPQLQFLTIANSKDSFLEIDVPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLE 587 (1380)
Q Consensus 509 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~p~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls 587 (1380)
+.+..++..+..+|.... +++++|+++++.... ++...|.++++|++|++++|.++.+ |..|+.+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEECCCCCCCCCCCCCC-CCCCEEECCCCCCCE----ECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 705746888451898888-876788788897577----375455577667488688773664397773060106886787
Q ss_pred CCCCCC--CCCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCC--CCCCHHHCCCCCCCEEECCCCCCC
Q ss_conf 778899--510167754558872368785488-422112655588434754644--214012128987868984355100
Q 000635 588 RSTVGD--IAIIGKLKNLEVLSFLQSDIVMLP-KEIGQLTKLRLLDLTDCFKLK--VIATNVLSSLTRLEALYMHNCYVE 662 (1380)
Q Consensus 588 ~~~i~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~l~--~~p~~~l~~L~~L~~L~l~~~~~~ 662 (1380)
+|.+.. |..|+++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCE
T ss_conf 985630485220786537888703775554451134898877989687885-232530686-732677778876688531
Q ss_pred EEEECCCCCCCCCCHHHHCCCCC-CCEEEEEECCCCCCCC
Q ss_conf 03511476445668254218999-8699987318988887
Q 000635 663 WEVETRGSEKRSASLDEFLHLPR-LTTLEIEVRNDDILPE 701 (1380)
Q Consensus 663 ~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~ 701 (1380)
. .....+..+..++. +..|+++.+.+..++.
T Consensus 167 ~--------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 167 T--------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp E--------ECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred E--------CCHHHHHHHHCCCCCCCEEECCCCCCCEECC
T ss_conf 0--------5733412120342002430046897532571
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=298.81 Aligned_cols=138 Identities=18% Similarity=0.202 Sum_probs=85.3
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCC--CCCCCCCCCCCEEECCCCCCCCC-CHHHHC
Q ss_conf 8436660998750999418412446-6332477888899802778899--51016775455887236878548-842211
Q 000635 547 VPEDFFTGMRKLRVVHFSGMRLASL-PYSIGLLQNLQTLCLERSTVGD--IAIIGKLKNLEVLSFLQSDIVML-PKEIGQ 622 (1380)
Q Consensus 547 ~p~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~Ls~~~i~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~ 622 (1380)
+|.++ ...+++|++++|.++.+ |..|+.+++|++|++++|.+.. |..|+++++|++|++++|.+..+ |..++.
T Consensus 27 iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 27 IPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp CCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCCC---CCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 86778---986758981587347179667256766528978898355248511368433676448898565458655234
Q ss_pred CCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 26555884347546442140121289878689843551000351147644566825421899986999873189888
Q 000635 623 LTKLRLLDLTDCFKLKVIATNVLSSLTRLEALYMHNCYVEWEVETRGSEKRSASLDEFLHLPRLTTLEIEVRNDDIL 699 (1380)
Q Consensus 623 L~~L~~L~L~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 699 (1380)
+++|++|++++|. +..++...++++++|++|++++|.+. ...+..+..+++|+.|+++.+.+..+
T Consensus 104 l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 104 PKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCC-CCCCCCCHHCCCCCCCEEECCCCCCC-----------CCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 4215376521267-66578101223782238988798341-----------14765456876568777656844554
Done!