Query 000636
Match_columns 1380
No_of_seqs 211 out of 262
Neff 6.7
Searched_HMMs 46136
Date Mon Apr 1 21:01:18 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1833 Nuclear pore complex, 100.0 4.7E-37 1E-41 357.7 35.3 646 559-1369 2-668 (679)
2 KOG1833 Nuclear pore complex, 99.9 9.4E-21 2E-25 222.3 21.7 424 334-846 198-642 (679)
3 smart00635 BID_2 Bacterial Ig- 98.2 7.9E-06 1.7E-10 76.7 8.8 71 993-1064 2-77 (81)
4 PF02368 Big_2: Bacterial Ig-l 98.0 6.7E-06 1.5E-10 76.7 4.0 64 996-1060 5-71 (79)
5 TIGR00864 PCC polycystin catio 97.7 0.72 1.6E-05 66.4 98.6 436 799-1343 1513-1982(2740)
6 PF02368 Big_2: Bacterial Ig-l 97.7 5.6E-05 1.2E-09 70.5 6.3 70 84-160 2-71 (79)
7 smart00635 BID_2 Bacterial Ig- 97.6 0.00033 7.1E-09 65.8 9.3 71 84-161 2-74 (81)
8 COG5492 Bacterial surface prot 95.8 0.24 5.2E-06 58.9 16.8 139 995-1183 183-323 (329)
9 COG5492 Bacterial surface prot 93.6 4.4 9.6E-05 48.3 19.6 142 885-1061 180-324 (329)
10 PF13629 T2SS-T3SS_pil_N: Pilu 87.8 4 8.7E-05 37.5 9.2 51 110-160 7-60 (72)
11 TIGR00864 PCC polycystin catio 85.0 2.6E+02 0.0056 42.2 105.2 409 619-1123 1565-1991(2740)
12 PF13629 T2SS-T3SS_pil_N: Pilu 77.0 20 0.00043 33.0 9.2 58 1000-1064 2-62 (72)
13 PRK14081 triple tyrosine motif 75.5 2.7E+02 0.0058 36.5 54.2 463 560-1107 109-606 (667)
14 KOG4289 Cadherin EGF LAG seven 71.6 4.4E+02 0.0095 37.2 37.2 129 970-1099 445-596 (2531)
15 PF13584 BatD: Oxygen toleranc 66.2 60 0.0013 40.8 13.2 96 894-997 19-115 (484)
16 PF08770 SoxZ: Sulphur oxidati 61.5 85 0.0018 31.0 10.4 84 889-984 1-95 (100)
17 KOG4221 Receptor mediating net 52.5 3.8E+02 0.0082 37.2 16.8 182 877-1081 131-331 (1381)
18 PF07703 A2M_N_2: Alpha-2-macr 49.3 1.7E+02 0.0037 29.7 11.0 116 895-1027 6-126 (136)
19 PF06832 BiPBP_C: Penicillin-B 48.4 52 0.0011 31.3 6.5 60 804-869 17-80 (89)
20 smart00634 BID_1 Bacterial Ig- 45.2 1.1E+02 0.0023 29.4 8.1 69 695-769 17-86 (92)
21 PF06832 BiPBP_C: Penicillin-B 38.9 1.2E+02 0.0025 28.9 7.3 51 329-383 31-83 (89)
22 PF09394 Inhibitor_I42: Chagas 38.4 3.5E+02 0.0076 25.5 10.6 69 898-977 2-75 (92)
23 KOG4194 Membrane glycoprotein 37.0 3.2E+02 0.007 35.2 12.0 165 406-623 512-694 (873)
24 PF12690 BsuPI: Intracellular 35.9 1.7E+02 0.0037 27.7 7.7 56 1322-1379 18-82 (82)
25 PF05688 DUF824: Salmonella re 33.4 56 0.0012 27.8 3.5 34 1322-1361 7-40 (47)
26 KOG1219 Uncharacterized conser 31.5 2.2E+03 0.049 32.9 46.5 295 859-1202 2144-2482(4289)
27 PRK10177 putative invasin; Pro 31.2 1.1E+02 0.0024 37.8 6.9 35 968-1002 425-459 (465)
28 smart00634 BID_1 Bacterial Ig- 30.2 2.8E+02 0.0061 26.5 8.4 65 903-976 18-83 (92)
29 PRK02654 putative inner membra 29.7 94 0.002 37.1 5.8 64 1088-1183 171-240 (375)
30 PF13584 BatD: Oxygen toleranc 29.6 1E+03 0.022 29.8 15.7 65 852-917 77-157 (484)
31 PF09134 Invasin_D3: Invasin, 29.6 2.1E+02 0.0045 28.3 7.2 77 903-994 21-98 (99)
32 KOG4289 Cadherin EGF LAG seven 29.4 1.9E+03 0.042 31.5 40.8 86 811-907 812-910 (2531)
33 PF00630 Filamin: Filamin/ABP2 28.5 1.6E+02 0.0034 28.2 6.4 23 1323-1345 16-38 (101)
34 cd04977 Ig1_NCAM-1_like First 28.4 2.9E+02 0.0063 26.2 8.2 35 996-1033 3-39 (92)
35 PRK02654 putative inner membra 28.1 1E+02 0.0022 36.8 5.7 62 998-1060 166-240 (375)
36 cd05724 Ig2_Robo Second immuno 27.3 1.4E+02 0.003 27.4 5.7 67 998-1069 1-70 (86)
37 cd05762 Ig8_MLCK Eighth immuno 27.1 4.2E+02 0.009 25.5 9.1 79 86-175 1-93 (98)
38 COG4856 Uncharacterized protei 26.3 1.2E+03 0.026 28.6 13.9 167 174-382 43-209 (403)
39 PF02369 Big_1: Bacterial Ig-l 26.2 3.2E+02 0.007 26.7 8.1 71 899-976 19-89 (100)
40 PF02369 Big_1: Bacterial Ig-l 25.4 3.2E+02 0.007 26.7 8.0 72 693-769 20-92 (100)
41 KOG1446 Histone H3 (Lys4) meth 21.9 4.7E+02 0.01 31.0 9.4 61 118-179 129-189 (311)
42 cd05865 Ig1_NCAM-1 First immun 21.8 3.6E+02 0.0077 26.0 7.4 37 996-1033 3-41 (96)
43 COG2373 Large extracellular al 20.9 1.3E+03 0.028 34.0 15.2 152 855-1021 982-1153(1621)
No 1
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-37 Score=357.70 Aligned_cols=646 Identities=21% Similarity=0.256 Sum_probs=466.8
Q ss_pred EEecCceEEEEEecCCcccccc-cceeEEEEEecCCcccccCceeeeeeecCCCcEEEEEecccceEEEEEEEcccCCCC
Q 000636 559 YLVPRTHVDVLLVGGPEPWEED-VDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDD 637 (1380)
Q Consensus 559 ~L~~GSs~~~~~~GGP~pw~~e-~~~~~~~~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~lGe~~l~~~vgN~~~~~ 637 (1380)
++.+||+..+...|||++|..| -.++++ . .+ ..+ .+. ...+.-..|+..|+.+|.... +.||..+..
T Consensus 2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~---~-t~--~~~--~~~--~~~~~~v~~~is~q~v~~~~~--~~~nl~~i~ 69 (679)
T KOG1833|consen 2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKT---M-TQ--VMS--EGG--PQPQSIVHFSISNQTVAVVNR--RGGNLGKIV 69 (679)
T ss_pred cccccCccceEEcCCCcccccchhHHHHH---H-HH--Hhh--ccC--CccceEEEEeecchhhhhhhh--hcccccccc
Confidence 3567999999999999999765 333332 0 00 001 111 011223369999999998877 889999999
Q ss_pred CCCCeeEEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeeeEEeeCCCeEEEEEEEEcCCCCeEeecCC
Q 000636 638 HPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSS 717 (1380)
Q Consensus 638 np~Pav~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~l~v~vfD~~Gr~f~n~SS 717 (1380)
+|.|++.++++.++|..|..+.+...+|.+++..++......| +++.|+....+.....-+.+..|.|.+-
T Consensus 70 ~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~~ 140 (679)
T KOG1833|consen 70 GPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSNP 140 (679)
T ss_pred ccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCCc
Confidence 9999999999999999999999998777776666664433322 3457887777776555555555555544
Q ss_pred ceEEEEEcCCCcceEeecccccccCCCcceEEEEEeeeceeEEEEEEEeeEeeccCCccccccccccccceeeeEEEEEe
Q 000636 718 LCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLV 797 (1380)
Q Consensus 718 L~~~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~~l~~~~~~~~~~~~~~l~~siel~lv 797 (1380)
+.+ -||+.+ +....+|+++..+++..|.+..+ .+.+..... ...
T Consensus 141 ~~~----------~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~~~g~-------------~s~--------- 184 (679)
T KOG1833|consen 141 LLT----------FHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTKAAGR-------------TSI--------- 184 (679)
T ss_pred hhe----------eecchh---hhhccccccchHHHhcccceeeE-EEeeecccc-------------cee---------
Confidence 321 234332 23336678788777888888777 554432110 000
Q ss_pred eeeEEcCceeEEeeCCcceEEEEEccceeEEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEEEEcccCCCcce
Q 000636 798 STLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAA 877 (1380)
Q Consensus 798 ~~v~v~P~~~~i~n~p~~~~~l~i~gGSG~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v~D~cl~~~~~a 877 (1380)
.+++.| +| .....+...|||+.++...+++....+... +.+.+-++.|++.|.++|++.|-|+.+ .++
T Consensus 185 -~~tl~~-----~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~sa 252 (679)
T KOG1833|consen 185 -KVTLHC-----MN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QSA 252 (679)
T ss_pred -EEEEEE-----ee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-ccc
Confidence 112222 11 222237889999999999888877766432 446778899999999999999999999 799
Q ss_pred eEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCccccc
Q 000636 878 SALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMS 957 (1380)
Q Consensus 878 ~a~V~V~di~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~ 957 (1380)
.|.++|.|+++|+++.+.. +++|.++++++..-+++|.+|+.++.++|+.+++.....+...+ +...
T Consensus 253 ~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s~~-----------~sg~ 319 (679)
T KOG1833|consen 253 DALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVISTK-----------VSGL 319 (679)
T ss_pred chheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccccc-----------cccc
Confidence 9999999999999998766 89999999999999999999999999999999965444555533 3357
Q ss_pred eEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEeCCCeeecCeeEEccCCEEEEEEEeCCccceEEEEeecCccEEEE
Q 000636 958 SFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATI 1037 (1380)
Q Consensus 958 ~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~VfpPLrl~P~~~tLv~Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V 1037 (1380)
+|.++|.++|.+++++++++..|+...|.++.+|+|.|+++.|+.++|+||+++|++++|||+|.....|+..|..+|.+
T Consensus 320 ~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~i 399 (679)
T KOG1833|consen 320 RYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIASI 399 (679)
T ss_pred eeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceeec
Confidence 99999999999999999999899999889999999999999999999999999999999999999999999999999999
Q ss_pred EccceEEEEEeeEeEEEEEEEEccCceEEEEEeEEEEEEceeeEEEEeecceeEeCcEEeEEEecc-----CCCeeeece
Q 000636 1038 HRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDVFSFYE 1112 (1380)
Q Consensus 1038 ~~~sG~Vta~s~G~t~It~~~~~~~g~~v~~~~~~V~V~~l~~v~I~~~~~~l~~g~~~p~~~~g~-----~g~pfsf~~ 1112 (1380)
+. ++.+++.+.|+++|.++..-.+|. +|++++-+.|..+-|+.+.+....+.+|..+.++..+. +..||-|+.
T Consensus 400 e~-s~~l~~~apg~ttiy~~~ivG~ga-v~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~ 477 (679)
T KOG1833|consen 400 EP-SILLTSSAPGYTTIYGTVIVGDGA-VTEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIK 477 (679)
T ss_pred cc-ccceEeeccCCcceeeEEEEecCe-eEEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhcc
Confidence 98 999999999999999954333665 46888889999999999999999999999999988763 347777766
Q ss_pred eeeE--EEEEEcCCceEEEEecccccccccccccccccceeecccccccccccEEEEEEeeceEEEEEEEEEEeccCCCC
Q 000636 1113 LCRN--YNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSY 1190 (1380)
Q Consensus 1113 ~~l~--f~Ws~sd~~vl~~~~~~~~~~e~~~~~~~~~g~i~~~~~~~~~~~~f~~~v~~~~~G~t~I~v~v~~~~~~~g~ 1190 (1380)
.... -+|.-. + .+.+.. ++ +..+
T Consensus 478 ~vvpv~~~~~e~-p-~Lnlsa-----------------------------------------r~-----------~~t~- 502 (679)
T KOG1833|consen 478 AVVPVKSHRNEV-P-LLNLSA-----------------------------------------RK-----------HFTG- 502 (679)
T ss_pred ceeEEeeccCcC-c-ccChhh-----------------------------------------hc-----------cccc-
Confidence 6532 234400 0 001100 00 0011
Q ss_pred ccceeeeeeEEEEEEecCccccccCceeeeCCCCCccccc---CC-ccccccccCCCCceeEEEEEEeeccccccccCCC
Q 000636 1191 SESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLL---PS-SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASK 1266 (1380)
Q Consensus 1191 ~~~~~~~~~i~i~V~~~L~L~~~~~~~~~l~p~~~~~~lL---pn-~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 1266 (1380)
....|+++-.+++...|.+ +.|.......+ +| +++.-+-|.. + +. .+ |.+ ..+
T Consensus 503 -rl~tF~t~t~~~~e~gl~v---------~~~~~din~~~v~~dN~~l~ktt~~lq---A-~l--~~---~~d----~tS 559 (679)
T KOG1833|consen 503 -RLSTFTTETTITVEDGLSV---------VQPEMDINTVRVAPDNSQLKKTTAWLQ---A-SL--SV---ESD----FTS 559 (679)
T ss_pred -ccCcceecceeEEeccceE---------EecccCCccceecCCCccceeEeeccc---c-eE--EE---eec----ccc
Confidence 2233567777777777776 33332222222 35 5655555555 2 22 22 431 223
Q ss_pred Cc-EEecCCceeecCCcceEEEEEEEecC-CceEEEEEEEEeeeeEEEEecC-------CCceeEEeeeCcEEEEEEEEE
Q 000636 1267 DD-ISIDGDTIKTTSSNHLACIQAKDRSS-GRIEIASCVRVAEVAQIRISNR-------YPLNVIHLAVGAECEIPISYY 1337 (1380)
Q Consensus 1267 ~~-v~vd~g~l~t~~~~g~a~i~v~~~~~-G~qti~~~V~V~~v~~l~i~~~-------~~~~l~~lpvG~~~~l~v~~~ 1337 (1380)
.+ +.+|+-.+ +-...+.+.+.+.+... -..+....|.+..|..+..... +...++.|+.|......+.++
T Consensus 560 ~ia~~~~~s~v-~q~r~ks~~ip~h~~dsaile~~~~~v~~l~vt~l~vhg~ta~~~~~ens~~~FLnt~~~~pv~yv~~ 638 (679)
T KOG1833|consen 560 RIAISADGSLV-TQGREKSAAIPVHNVDSAILETVLIPVTVLRVTSLDVHGTTALKSAFENSPLIFLNTGAADPVKYVPQ 638 (679)
T ss_pred ceEeecchhhh-hccccCCCCCcccccchhhheeecceeeeeeeEeecccchhhhhhhhcCCceEEeecccccceEEeec
Confidence 32 22233333 44555666666666555 3566777788888887766532 256789999999999999999
Q ss_pred cCCCcccccccceeEEEEEecccceEEEEeec
Q 000636 1338 DALGTPFHEAHNVILYHAETNYHDVVSINYTL 1369 (1380)
Q Consensus 1338 D~~G~~F~~~~~~~~l~~~~nr~dl~~i~~~~ 1369 (1380)
|..|++.-...|+. ++++++.+|+.+.+..
T Consensus 639 ~arG~al~~~sns~--n~rph~~vl~p~la~~ 668 (679)
T KOG1833|consen 639 EARGVALVSLSNST--NHRPHLLVLIPYLACC 668 (679)
T ss_pred cccCceeeeeccCC--CCCCcceEEeChhhcc
Confidence 99999999888844 9999999999888774
No 2
>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=9.4e-21 Score=222.25 Aligned_cols=424 Identities=13% Similarity=-0.028 Sum_probs=296.6
Q ss_pred EEEeccCCCCCceEEEEecCceeEEEeeCceEEec-cCceEEEEEEeccCCcceeeEEEEEecccceEEeecccEEEEeC
Q 000636 334 LMATGGCAKTSSDYKWFSSDMATVSITASGVVQAK-KPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVG 412 (1380)
Q Consensus 334 L~a~GGsg~~~~~y~WsSsn~~Va~V~~~Gvvt~~-~~G~t~V~a~d~~n~~~~~~~~V~V~~p~~i~i~p~~~~E~~vg 412 (1380)
+.-+||++ .|. ..++++.+ ..|...+.+++..+|.|.++++|+|.++-.+. .+ +.+++.++
T Consensus 198 ~~~t~gs~------~~e----------~~~l~t~~s~v~~pl~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~s-a~al~rva 259 (679)
T KOG1833|consen 198 FEGTGGSL------SDE----------VQILMTTGSDVGFPLIQAHDVLNPKNNGQVKLRVSDAGLVG-QS-ADALVRVA 259 (679)
T ss_pred ccccccee------EEE----------EEeeecccccccchhhcHHHhcCCCCCceEEEEEecccccc-cc-cchheecc
Confidence 77788888 554 23445555 36777889999999999999999999999988 87 89999999
Q ss_pred cEEEEEEEEEe--cCC----cccccCCCcceEEEEEeCCccEEEeccCCCCccccccCCccccccCCCCCceeE--EEEE
Q 000636 413 SHLQAAVTMKT--LNG----AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWA--HLYA 484 (1380)
Q Consensus 413 ~~l~l~v~~~~--~~G----~~Fs~c~~~~~~v~w~~~~~if~~~~~~~~~~~~~~~~~~~~~~~~~g~~C~~~--~v~a 484 (1380)
+...|++.+-. ..| ....+|+.....|+-+ ...+|+... ++ .+ ++.-..+|+.. +++|
T Consensus 260 d~~~l~id~eglv~~G~s~~vtll~~~~~g~~Feve-q~~l~d~qv-------d~--~~----lhV~s~~~sg~~~tl~A 325 (679)
T KOG1833|consen 260 DIHSLAIDAEGLVEIGASVEVTLLAQDETGASFEVE-QRPLADAQV-------DA--SN----LHVISTKVSGLRYTLRA 325 (679)
T ss_pred CccEeeecccccccCCceEEEEEEeecccCCccccc-ccccccccc-------cc--cc----CcccccccccceeEEEe
Confidence 99888887633 244 5778888777667764 666665532 11 11 12223366665 9999
Q ss_pred eeeeeEEEEEEEeeccccccccCCCceEEEEEEEEEeeCCceeeecCCCCCCCCceeccccccccccccccceEEEecCc
Q 000636 485 SSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRT 564 (1380)
Q Consensus 485 ~~~G~t~l~vs~~~~~~~~~~~~~g~~~l~asi~IaaY~pL~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~ev~L~~GS 564 (1380)
.+.|.++++++|+. +...+.+++++.+|.++++..+ ++-+.|.|||
T Consensus 326 ~~lGtttl~vs~~~----------S~G~vls~~Th~vqlysp~~l~------------------------p~~l~l~PGs 371 (679)
T KOG1833|consen 326 NSLGTTTLSVSSKS----------SSGRVLSSRTHTVQLYSPIFLQ------------------------PKRLTLIPGS 371 (679)
T ss_pred eccccEEEEEEEec----------ccceEeeccceeEEEeccccCC------------------------cceEEEecCC
Confidence 99999999999977 5566777778888877777742 3478899999
Q ss_pred eEEEEEecCCcccccc-cceeEEEEEecCCcccccCceeeeeeecCCCcEEEEEecccceEEEEEEEcccCCCCCCCCee
Q 000636 565 HVDVLLVGGPEPWEED-VDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAV 643 (1380)
Q Consensus 565 s~~~~~~GGP~pw~~e-~~~~~~~~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~lGe~~l~~~vgN~~~~~np~Pav 643 (1380)
++.+.++|||+||..+ ..+++..-...|+ .......++..+......++-|..++++++.++++|+|+ .+++|+.
T Consensus 372 k~~l~~eGGp~p~~~ld~~~~~n~~A~ie~---s~~l~~~apg~ttiy~~~ivG~gav~~qti~lsv~glPg-i~l~aas 447 (679)
T KOG1833|consen 372 KFQLEVEGGPQPTPPLDFSLNNNMIASIEP---SILLTSSAPGYTTIYGTVIVGDGAVTEQTIVLSVAGLPG-IILSAAS 447 (679)
T ss_pred ceEEEEccCCCCCCcccceecccceeeccc---ccceEeeccCCcceeeEEEEecCeeEEEEEEeeecCcCc-eeeeccc
Confidence 9999999999999996 5555422111111 110011111111111213455999999999999999999 8999998
Q ss_pred EEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeeeEEeeCCCeEEEEEEEEcCCCCeEeecCCceEEE-
Q 000636 644 AEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGW- 722 (1380)
Q Consensus 644 ~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~l~v~vfD~~Gr~f~n~SSL~~~W- 722 (1380)
..+.+ |.++.|. +. +.+++ +--|+..+.+.++.|+...-+..+.+.+.+++.-++.|++|++....|
T Consensus 448 ~~v~t------gdrvtl~---~v--~~spg-~ede~~f~fi~~vvpv~~~~~e~p~Lnlsar~~~t~rl~tF~t~t~~~~ 515 (679)
T KOG1833|consen 448 RKVET------GDRVTLR---LV--GVSPG-AEDEEPFAFIKAVVPVKSHRNEVPLLNLSARKHFTGRLSTFTTETTITV 515 (679)
T ss_pred ceeec------CceEEEE---EE--eecCC-ccccchhhhccceeEEeeccCcCcccChhhhcccccccCcceecceeEE
Confidence 88866 9999988 33 33344 445666778888888855444448888999999999999999999999
Q ss_pred EEcCCCcceEeeccccc----ccCCCcceEEEEEe-----eeceeEEEEEEEeeEeeccCCccccccccccccceeeeEE
Q 000636 723 ELSNCDGLAYWDDAYGS----QKSASSWERFLVLQ-----NESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVR 793 (1380)
Q Consensus 723 ~~s~~~~la~~~~~~~~----~~~~s~~~~~~~l~-----~~~G~~~I~at~~gy~~~~l~~~~~~~~~~~~~~l~~sie 793 (1380)
+... .-++..++ .++ .+++...+..+.++ .+.++.. ++.+|..+++.+.+..+...+..++.+.+
T Consensus 516 e~gl-~v~~~~~d-in~~~v~~dN~~l~ktt~~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai- 589 (679)
T KOG1833|consen 516 EDGL-SVVQPEMD-INTVRVAPDNSQLKKTTAWLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI- 589 (679)
T ss_pred eccc-eEEecccC-CccceecCCCccceeEeecccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh-
Confidence 3332 11111222 111 23444444444433 3455443 67788888877776666566666676666
Q ss_pred EEEeeeeEEcCceeEEeeCCcceEEEEEccceeEEEEEECCcceE-EEEecCCc
Q 000636 794 LQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVV-EVIQAPEG 846 (1380)
Q Consensus 794 l~lv~~v~v~P~~~~i~n~p~~~~~l~i~gGSG~~~~~~~~~~Ia-~v~~~~~g 846 (1380)
+....+.+.|..+++|+++...+.+.+..+|+++.....++..+ .+.+++.|
T Consensus 590 -le~~~~~v~~l~vt~l~vhg~ta~~~~~ens~~~FLnt~~~~pv~yv~~~arG 642 (679)
T KOG1833|consen 590 -LETVLIPVTVLRVTSLDVHGTTALKSAFENSPLIFLNTGAADPVKYVPQEARG 642 (679)
T ss_pred -heeecceeeeeeeEeecccchhhhhhhhcCCceEEeecccccceEEeeccccC
Confidence 55667899999999999999999999999999888777666555 44555555
No 3
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=98.16 E-value=7.9e-06 Score=76.66 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=60.0
Q ss_pred eCCCeeecCeeEEccCCEEEEEEEeCCc--c-ceEEEEeecCccEEE-EEccceE-EEEEeeEeEEEEEEEEccCce
Q 000636 993 YAPPRIHPHDIFLVPGASYMLTLKGGPT--V-GVYVDYTSTDEEIAT-IHRSSGQ-LFAISPGNTTLIATVFGNGDV 1064 (1380)
Q Consensus 993 fpPLrl~P~~~tLv~Gs~~ql~~~GGP~--p-~~~i~fss~n~~Va~-V~~~sG~-Vta~s~G~t~It~~~~~~~g~ 1064 (1380)
+..+++.|.+..|..|...||.+.=-|. + ...+.|+++|++||+ |+. +|+ |+|++.|.++|++++.+...+
T Consensus 2 ~~~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~~~~ 77 (81)
T smart00635 2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDGSSA 77 (81)
T ss_pred ccEEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCCcce
Confidence 3467899999999999999999972222 2 678999999999999 687 999 999999999999999876543
No 4
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.95 E-value=6.7e-06 Score=76.68 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=58.9
Q ss_pred CeeecCeeEEccCCEEEEEEEeCCccc--eEEEEeecCccEEEEE-ccceEEEEEeeEeEEEEEEEEc
Q 000636 996 PRIHPHDIFLVPGASYMLTLKGGPTVG--VYVDYTSTDEEIATIH-RSSGQLFAISPGNTTLIATVFG 1060 (1380)
Q Consensus 996 Lrl~P~~~tLv~Gs~~ql~~~GGP~p~--~~i~fss~n~~Va~V~-~~sG~Vta~s~G~t~It~~~~~ 1060 (1380)
+.+.|..+.|..|...||...+-|+.. ..+.|+++|++||+|+ . .|+|+|++.|+++|++++.+
T Consensus 5 I~i~~~~~~l~~G~~~~l~~~~~~~~~~~~~v~w~ssn~~iatV~~~-~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 5 ITITPTSVTLKVGQTQQLTATVTPSDGSNSKVTWSSSNPSIATVDGN-TGKVTALKAGTATITATSGD 71 (79)
T ss_dssp EEETTTEEECETTCEETTEEEEEEEESTTSCEEEEESSTTTEEEETT-TEEEEESSSCEEEEEEEETT
T ss_pred EEEECCEEEEECCCEEEEEEEEEECCCcEeEEEEEeCCCeEEEEECC-CEEEEEEECeEEEEEEEECC
Confidence 568999999999999999999888764 5799999999999999 7 99999999999999999976
No 5
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.75 E-value=0.72 Score=66.36 Aligned_cols=436 Identities=14% Similarity=0.124 Sum_probs=233.2
Q ss_pred eeEEcCceeEEeeCCcceEEEEEcccee-EEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEEEEcccCCCcce
Q 000636 799 TLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAA 877 (1380)
Q Consensus 799 ~v~v~P~~~~i~n~p~~~~~l~i~gGSG-~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v~D~cl~~~~~a 877 (1380)
.+.+.++...+.....+.-+-....|+. .|.|...+...... ++ ....-+=..+|..+|.++--.-.+....
T Consensus 1513 ~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~----~n---pt~~yTY~spGtYtVtLTvtN~~Gs~~~ 1585 (2740)
T TIGR00864 1513 GLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF----GG---NTIFYTFRSVGTFNIIVTAENDVGAAQA 1585 (2740)
T ss_pred ceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc----CC---CceEEeecCCceEEEEEEEecCCCccce
Confidence 3455555444333332322223456776 79999877433211 11 0012222567888887775544454455
Q ss_pred eEEEEEee-eeEEEEEec------------ceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCC
Q 000636 878 SALVQVAD-VDWIKIMSG------------EEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDD 944 (1380)
Q Consensus 878 ~a~V~V~d-i~~I~v~~~------------~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~ 944 (1380)
+..|.|.+ |.-+.|... +...+.-|.++.+...+ .+| ..+.|.+.+- .
T Consensus 1586 T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~--~~G--------TnvsysW~~~---------~ 1646 (2740)
T TIGR00864 1586 SIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGF--KDG--------TNLSFSWNAI---------L 1646 (2740)
T ss_pred eEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeeecc--CCC--------CeeEEEEEEe---------c
Confidence 66677764 333344321 01123444555544433 222 2234444330 0
Q ss_pred CCCCCCCC--ccccceEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEeCCC---eeecCeeEEccCCEEEEEE--Ee
Q 000636 945 ATSSPDGG--YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPP---RIHPHDIFLVPGASYMLTL--KG 1017 (1380)
Q Consensus 945 ~~s~~~~~--~~~~~~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL---rl~P~~~tLv~Gs~~ql~~--~G 1017 (1380)
. +.+.+. ..-+..+.++-.+.|.-++++++.+.-|+. ++...|.|-.|+ .|....-...+|+.+++.+ .+
T Consensus 1647 ~-n~~dg~~~~~tGk~~~vt~~~pG~Y~VtL~aSN~vG~~--t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~ 1723 (2740)
T TIGR00864 1647 D-NEPDGPAFAGSGKGAKLNPLEAGPCDIFLQAANLLGQA--TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAE 1723 (2740)
T ss_pred C-CCCCCccccccCceeEEecCCCceEEEEEEEeecccce--eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecC
Confidence 0 000010 012356778889999999999998877876 455666666675 3443333345688766665 67
Q ss_pred CCccceEEEEeecCccEEEEEccceEE-EEEeeEeEEEEEEEEccCceEEEEEeEEEEEEc-eeeEEEEeecc----eeE
Q 000636 1018 GPTVGVYVDYTSTDEEIATIHRSSGQL-FAISPGNTTLIATVFGNGDVVICQAFSSVKVGV-PSSVTLNAQSD----QLA 1091 (1380)
Q Consensus 1018 GP~p~~~i~fss~n~~Va~V~~~sG~V-ta~s~G~t~It~~~~~~~g~~v~~~~~~V~V~~-l~~v~I~~~~~----~l~ 1091 (1380)
|. +....|+..+..--.... .-.. +=-+.|.-.|+.++.+.-|.. +.+..|+|.. +.|+.|+.... -+.
T Consensus 1724 GS--~vty~W~~gdG~s~~~s~-p~~tHtf~~~G~y~VtVta~N~vss~--~~s~~V~VqepV~GL~i~~~~~~~~~~~~ 1798 (2740)
T TIGR00864 1724 GS--GLQYRWFLEEGDDLETSE-PFMSHSFPSAGLHLVTMKAFNELGSA--NASEEVDVQEPISGLKIRAADAGEQNFFA 1798 (2740)
T ss_pred CC--CcEEEEEECCCCCcccCC-CceEEEccCCceEEEEEEEEcccccc--ceeEEEEEEeccccceEecCCCCccccee
Confidence 75 667888877753221111 1112 224588889999997654432 2355566654 46888875543 366
Q ss_pred eCcEEeEEEeccCCCeeeeceeeeEEEEEEcCCceEEEEecccccccccccccccccceeecccccccccccEEEEEEee
Q 000636 1092 VGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRS 1171 (1380)
Q Consensus 1092 ~g~~~p~~~~g~~g~pfsf~~~~l~f~Ws~sd~~vl~~~~~~~~~~e~~~~~~~~~g~i~~~~~~~~~~~~f~~~v~~~~ 1171 (1380)
+|...++......|++.+ |.|...+..-. . +. .+..+...
T Consensus 1799 ag~~v~F~a~vstGsnVs-------w~W~f~~g~s~----~---gk--------------------------~v~~Tf~~ 1838 (2740)
T TIGR00864 1799 ADSSVCFQGELATGTNVS-------WCWAIDGGSSK----M---GK--------------------------HACMTFPD 1838 (2740)
T ss_pred cCcEEEEEEEccCCCeeE-------EEEEeCCCCcc----c---cc--------------------------eeEEecCC
Confidence 788877777666777764 99999643311 0 00 11345678
Q ss_pred ceEEEEEEEEEEeccCCCCccceeeeeeEEEEEEecC-ccccccCceeeeCCCCCcccccCC-ccccccc-cCCCCceeE
Q 000636 1172 AGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDL-PLALGIPVTWVLPPHYTSTSLLPS-SSESHGQ-WDSQSHKGS 1248 (1380)
Q Consensus 1172 ~G~t~I~v~v~~~~~~~g~~~~~~~~~~i~i~V~~~L-~L~~~~~~~~~l~p~~~~~~lLpn-~~~~~~~-~~~~~~~~~ 1248 (1380)
+|.-+|++++... . +++ +.+-.+.|-+++ .| .|.++. ....+| .+.++-- ..| ..
T Consensus 1839 aG~ytV~L~AsN~-v-s~~------~~s~~~~VQe~I~~L--------~L~as~--~~~~~n~~v~fsa~l~~G----S~ 1896 (2740)
T TIGR00864 1839 AGTFAIRLNASNA-V-SGK------SASREFFAEEPIFGL--------ELKASK--KIAAIGEKVEFQILLAAG----SA 1896 (2740)
T ss_pred CeEEEEEEEEEcc-c-Ccc------eeeeeEEEEEecceE--------EEeccc--ccccCCCEEEEEEEecCC----Cc
Confidence 9999999999852 2 111 234455555543 22 122221 122244 2222110 112 13
Q ss_pred EEEEEeeccccccccCCCCcEEecCC-ceeecCCcceEEEEEEEecC-C--ceEEEEEEEEeeeeEEEEecCCCceeEEe
Q 000636 1249 IVYSLLKFCSEKNEAASKDDISIDGD-TIKTTSSNHLACIQAKDRSS-G--RIEIASCVRVAEVAQIRISNRYPLNVIHL 1324 (1380)
Q Consensus 1249 ~~y~~l~~~~~~~~~~~~~~v~vd~g-~l~t~~~~g~a~i~v~~~~~-G--~qti~~~V~V~~v~~l~i~~~~~~~l~~l 1324 (1380)
++|.+-= . ...+.+.-++. ...+....|.-.|.+++.+. + .-++.+.| ..||.-|+|...- .. .+
T Consensus 1897 Vtf~w~f-G------dgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~V-le~V~gL~I~~~c--~~-~~ 1965 (2740)
T TIGR00864 1897 VNFRLQI-G------GAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEV-LEAVRGLQIPDCC--AA-GI 1965 (2740)
T ss_pred eEEEEEe-C------CCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEE-EEeccceEecCCc--cc-ce
Confidence 4554421 1 11222211332 23677777888899998888 5 33444434 5667777776542 11 38
Q ss_pred eeCcEEEEEEEEEcCCCcc
Q 000636 1325 AVGAECEIPISYYDALGTP 1343 (1380)
Q Consensus 1325 pvG~~~~l~v~~~D~~G~~ 1343 (1380)
+.|.+.+|..+. ..|.+
T Consensus 1966 ~~g~~~tF~A~v--~~g~~ 1982 (2740)
T TIGR00864 1966 ATGEEKNFTANV--QRGKP 1982 (2740)
T ss_pred ecCceEEEEEEE--ecCCc
Confidence 999999999988 56655
No 6
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=97.74 E-value=5.6e-05 Score=70.50 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=60.8
Q ss_pred eeeeEEeCCCceEEeccCeEEEEEEEEEcCceeEEecCCCceEEEEeCCceEEEecCcceEEEEeeeeeEEEEEecc
Q 000636 84 AEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTR 160 (1380)
Q Consensus 84 ~e~i~L~P~~~vyll~G~~i~y~v~~~~qg~~~~i~lPs~~y~w~~~n~~Va~vd~~~g~vta~~~G~t~V~l~d~n 160 (1380)
++.|.|.|. .+.|.+|...+|++...-++. .+..+.|+++|++||+||...|+++|++.|.+.|++...+
T Consensus 2 v~~I~i~~~-~~~l~~G~~~~l~~~~~~~~~------~~~~v~w~ssn~~iatV~~~~G~Vta~~~G~a~Itat~~~ 71 (79)
T PF02368_consen 2 VTSITITPT-SVTLKVGQTQQLTATVTPSDG------SNSKVTWSSSNPSIATVDGNTGKVTALKAGTATITATSGD 71 (79)
T ss_dssp TSSEEETTT-EEECETTCEETTEEEEEEEES------TTSCEEEEESSTTTEEEETTTEEEEESSSCEEEEEEEETT
T ss_pred CcEEEEECC-EEEEECCCEEEEEEEEEECCC------cEeEEEEEeCCCeEEEEECCCEEEEEEECeEEEEEEEECC
Confidence 467899975 899999999999988766554 2378999999999999994499999999999999999886
No 7
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=97.60 E-value=0.00033 Score=65.78 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=59.5
Q ss_pred eeeeEEeCCCceEEeccCeEEEEEEEEEcCceeEEecCCCceEEEEeCCceEE-EecCcce-EEEEeeeeeEEEEEeccc
Q 000636 84 AEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQ-VDNMMGL-TQALRLGQTAVIVEDTRV 161 (1380)
Q Consensus 84 ~e~i~L~P~~~vyll~G~~i~y~v~~~~qg~~~~i~lPs~~y~w~~~n~~Va~-vd~~~g~-vta~~~G~t~V~l~d~n~ 161 (1380)
+.+|.|.|+ ...|.+|...++++. +..+.-. - ...+.|+++|++||+ ++. .|+ ++|++.|.+.|+++..+.
T Consensus 2 ~~~i~i~p~-~~~l~~G~~~~l~a~-~~~~~~~---~-~~~v~w~Ssn~~vatvv~~-~G~~vta~~~G~a~Ita~~~~~ 74 (81)
T smart00635 2 VTSVTVTPT-TASVKKGLTLQLTAT-VTPSSAK---V-TGKVTWTSSNPSVATVVNA-SGLVVTAVAAGTATITATSGDG 74 (81)
T ss_pred ccEEEEeCC-eeEEeCCCeEEEEEE-EECCCCC---c-cceEEEEECCCcEEEEECC-CCCEEEEEeceEEEEEEEECCC
Confidence 568999974 789999999999999 4554321 1 678999999999999 566 899 999999999999998764
No 8
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=95.84 E-value=0.24 Score=58.86 Aligned_cols=139 Identities=19% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCeeecCeeEEccCCEEEEEEEeCCcc--ceEEEEeecCccEEEEEccceEEEEEeeEeEEEEEEEEccCceEEEEEeEE
Q 000636 995 PPRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSS 1072 (1380)
Q Consensus 995 PLrl~P~~~tLv~Gs~~ql~~~GGP~p--~~~i~fss~n~~Va~V~~~sG~Vta~s~G~t~It~~~~~~~g~~v~~~~~~ 1072 (1380)
-+.+.|....|..|+...|++.=-|.. +..+.|+++|+++|+|+..+|+|+|++.|.+.|+++-.+... ...+.
T Consensus 183 gvtl~k~s~~l~vG~t~tlta~v~P~~at~K~v~wtSsd~s~atv~~~~g~Itav~~Gs~~It~tt~dGs~----~a~~~ 258 (329)
T COG5492 183 GITVNKTSDTLKVGDTDTLTATVTPDNATDKTVTWTSSDPSKATVDDNTGKITAVAAGTANITATTNDGSK----TATCK 258 (329)
T ss_pred eeeecCCccceEeeeeEEEEEEEcCCCCCCCceeEecCCCceeEecCCceEEEEEecCCceEEEEeccccc----ceeEE
Confidence 367899999999999999999877622 578999999999999654499999999999999999876542 23556
Q ss_pred EEEEceeeEEEEeecceeEeCcEEeEEEeccCCCeeeeceeeeEEEEEEcCCceEEEEecccccccccccccccccceee
Q 000636 1073 VKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQF 1152 (1380)
Q Consensus 1073 V~V~~l~~v~I~~~~~~l~~g~~~p~~~~g~~g~pfsf~~~~l~f~Ws~sd~~vl~~~~~~~~~~e~~~~~~~~~g~i~~ 1152 (1380)
|.|.....+.+.... .+...+- +.+.+ .-...|..++..+++.... +
T Consensus 259 VtV~~~~~~~~~~~~---------~~~~~~~-~~~~~----d~~~~~t~~~~~~~~~~~~---~---------------- 305 (329)
T COG5492 259 VTVNKATDLTVSYNA---------HVTNTGW-QTDAS----DKVVAGTSSNSNIAEVDAI---G---------------- 305 (329)
T ss_pred EEeccccccceeeee---------eeeeeec-ccccc----cceEEeeecCCceeEeecc---e----------------
Confidence 666665541111110 1111221 12221 1367899999987766544 1
Q ss_pred cccccccccccEEEEEEeeceEEEEEEEEEE
Q 000636 1153 SNDLDKKELGFIKTLYGRSAGRTDVATTFSC 1183 (1380)
Q Consensus 1153 ~~~~~~~~~~f~~~v~~~~~G~t~I~v~v~~ 1183 (1380)
.+.+.++|+.+++....|
T Consensus 306 -------------~~~~~~~~~~t~~a~~~n 323 (329)
T COG5492 306 -------------LINAPSGGKITYTATTDN 323 (329)
T ss_pred -------------eEecCCCCceEEEEEEee
Confidence 346788899888888876
No 9
>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]
Probab=93.62 E-value=4.4 Score=48.33 Aligned_cols=142 Identities=20% Similarity=0.164 Sum_probs=94.2
Q ss_pred eeeEEEEEecceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeecc-EEEEEeCCCCCCCCCCccccceEEEEE
Q 000636 885 DVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDH-IVELIDDDATSSPDGGYFSMSSFKIMA 963 (1380)
Q Consensus 885 di~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~-iv~l~~~~~~s~~~~~~~~~~~~~V~g 963 (1380)
-+..+.+. +.--++.+|++.++.+.+..+ .+.+. .+...-++. +.++ ......|+|
T Consensus 180 ~~~gvtl~-k~s~~l~vG~t~tlta~v~P~-----~at~K---~v~wtSsd~s~atv--------------~~~~g~Ita 236 (329)
T COG5492 180 PVTGITVN-KTSDTLKVGDTDTLTATVTPD-----NATDK---TVTWTSSDPSKATV--------------DDNTGKITA 236 (329)
T ss_pred eeeeeeec-CCccceEeeeeEEEEEEEcCC-----CCCCC---ceeEecCCCceeEe--------------cCCceEEEE
Confidence 34556666 444469999999999998741 11121 111111112 2221 124788999
Q ss_pred eeEEEEEEEEEEEccCcceEEeecEEEEEeCCCeeecCeeEEccCCEEEEEEEeCCcc--ceEEEEeecCccEEEEEccc
Q 000636 964 KHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIHRSS 1041 (1380)
Q Consensus 964 ~s~G~ttL~as~~~~~G~~i~S~~~~I~VfpPLrl~P~~~tLv~Gs~~ql~~~GGP~p--~~~i~fss~n~~Va~V~~~s 1041 (1380)
++.|.+.++++..+ |.. ++...|.|=..-- +.++...+++-.|-|.+ +..+.|.+++..++.++. .
T Consensus 237 v~~Gs~~It~tt~d--Gs~--~a~~~VtV~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~t~~~~~~~~~~~-~ 304 (329)
T COG5492 237 VAAGTANITATTND--GSK--TATCKVTVNKATD-------LTVSYNAHVTNTGWQTDASDKVVAGTSSNSNIAEVDA-I 304 (329)
T ss_pred EecCCceEEEEecc--ccc--ceeEEEEeccccc-------cceeeeeeeeeeecccccccceEEeeecCCceeEeec-c
Confidence 99999999999763 433 3444454432211 44544456666665544 789999999999999998 9
Q ss_pred eEEEEEeeEeEEEEEEEEcc
Q 000636 1042 GQLFAISPGNTTLIATVFGN 1061 (1380)
Q Consensus 1042 G~Vta~s~G~t~It~~~~~~ 1061 (1380)
|++.|.+.|+.++++.....
T Consensus 305 ~~~~~~~~~~~t~~a~~~n~ 324 (329)
T COG5492 305 GLINAPSGGKITYTATTDNV 324 (329)
T ss_pred eeEecCCCCceEEEEEEeec
Confidence 99999999999999987644
No 10
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=87.83 E-value=4 Score=37.50 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=42.6
Q ss_pred EEcCceeEEecCCCceEEEEeCCceEEEe---cCcceEEEEeeeeeEEEEEecc
Q 000636 110 IRGNIPQVVALPSPHHRWSVSNSSVAQVD---NMMGLTQALRLGQTAVIVEDTR 160 (1380)
Q Consensus 110 ~~qg~~~~i~lPs~~y~w~~~n~~Va~vd---~~~g~vta~~~G~t~V~l~d~n 160 (1380)
+..|+-+.+.+|.+-++-.+.|++||.+. ++.=+++|.+.|.|++++-|++
T Consensus 7 l~~g~s~~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~ 60 (72)
T PF13629_consen 7 LTVGQSRILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKD 60 (72)
T ss_pred EeCCCEEEEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCC
Confidence 45566677788888899999999999874 4456999999999999999987
No 11
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=84.99 E-value=2.6e+02 Score=42.20 Aligned_cols=409 Identities=14% Similarity=0.122 Sum_probs=219.7
Q ss_pred cccceEEEEEEEcccCCCCCCCCeeEEEEEEEEEecC-CeEEEEEccCcchhhhhccccccCCCCCceeeeeEEeeCCCe
Q 000636 619 QTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFP-ASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQT 697 (1380)
Q Consensus 619 ~~lGe~~l~~~vgN~~~~~np~Pav~~~~~~v~C~~P-~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 697 (1380)
.+.|.+++++++-|..+..+ .++.+.+..| .-+.|... +.. ....+ ..+.+ .-.+..++.
T Consensus 1565 ~spGtYtVtLTvtN~~Gs~~-------~T~~i~V~~~I~GlqI~~~-~~~-----gg~~~----~~~~~--~~~~~t~~~ 1625 (2740)
T TIGR00864 1565 RSVGTFNIIVTAENDVGAAQ-------ASIFLFVLQEIEGLQILGE-TAE-----GGGGG----VQELD--GCYFETNHT 1625 (2740)
T ss_pred cCCceEEEEEEEecCCCccc-------eeEEEEEeecccceEEEee-ccc-----ccCCc----ccccc--cceeccCCE
Confidence 36799999999999988543 3444444443 33444321 100 00000 00000 001367788
Q ss_pred EEEEEEEEcCCCCeEeecCCceEEEEEcCCCcceEeecccccccCCCcceEEEEEeeeceeEEEEEEEeeEeeccCCccc
Q 000636 698 IRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHS 777 (1380)
Q Consensus 698 ~~l~v~vfD~~Gr~f~n~SSL~~~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~~l~~~~ 777 (1380)
+.|...+ ..| +.+.++|.+-.... .+.+. .+++++. +.....+.|...|+.++.-....
T Consensus 1626 v~l~~~~--~~G------TnvsysW~~~~~n~-----~dg~~-~~~tGk~-~~vt~~~pG~Y~VtL~aSN~vG~------ 1684 (2740)
T TIGR00864 1626 VQFHAGF--KDG------TNLSFSWNAILDNE-----PDGPA-FAGSGKG-AKLNPLEAGPCDIFLQAANLLGQ------ 1684 (2740)
T ss_pred EEeeecc--CCC------CeeEEEEEEecCCC-----CCCcc-ccccCce-eEEecCCCceEEEEEEEeecccc------
Confidence 8887643 446 56689998832100 00000 1123322 22223678888888887632111
Q ss_pred cccccccccceeeeEEEEEee---eeEEcCceeEEeeCCcceEEEEEcccee-EEEEEECCcceEEEEecCCcceeeeEE
Q 000636 778 AQLLEISESFLTDAVRLQLVS---TLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLM 853 (1380)
Q Consensus 778 ~~~~~~~~~~l~~siel~lv~---~v~v~P~~~~i~n~p~~~~~l~i~gGSG-~~~~~~~~~~Ia~v~~~~~g~~~~~~~ 853 (1380)
.+++-.+.+++ .+.+..+......+..+.-...+..||+ .|.|+..+..-... .++ .+.
T Consensus 1685 ----------~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~-s~p------~~t 1747 (2740)
T TIGR00864 1685 ----------ATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLET-SEP------FMS 1747 (2740)
T ss_pred ----------eeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCccc-CCC------ceE
Confidence 12222222233 2222222222223333444556689998 89999777432111 111 122
Q ss_pred EeeccceEEEEEEEEcccCCCcceeEEEEEeee-eEEEEEecce---EEEecCcEEEEEEEEeecCCCEEecCCceeeEE
Q 000636 854 LSPKGLGTALVTVYDVGLAPPRAASALVQVADV-DWIKIMSGEE---ISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDI 929 (1380)
Q Consensus 854 vtp~~~G~~~v~v~D~cl~~~~~a~a~V~V~di-~~I~v~~~~~---i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l 929 (1380)
-+=..+|...|+++-..--+.......|.|.++ ..+.|...+. ..+..|.++.+..++ ++|.. +-|
T Consensus 1748 Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~v--stGsn--------Vsw 1817 (2740)
T TIGR00864 1748 HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGEL--ATGTN--------VSW 1817 (2740)
T ss_pred EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEc--cCCCe--------eEE
Confidence 233457887777775443444444555666544 3455543221 124566666555543 23322 233
Q ss_pred EEEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEeCCC---eeecCeeEEc
Q 000636 930 RVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPP---RIHPHDIFLV 1006 (1380)
Q Consensus 930 ~l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~VfpPL---rl~P~~~tLv 1006 (1380)
....+.. ....+.....+-...|.-++++.+.+.-+... .+..+.|=.|+ .|...+-...
T Consensus 1818 ~W~f~~g---------------~s~~gk~v~~Tf~~aG~ytV~L~AsN~vs~~~--~s~~~~VQe~I~~L~L~as~~~~~ 1880 (2740)
T TIGR00864 1818 CWAIDGG---------------SSKMGKHACMTFPDAGTFAIRLNASNAVSGKS--ASREFFAEEPIFGLELKASKKIAA 1880 (2740)
T ss_pred EEEeCCC---------------CccccceeEEecCCCeEEEEEEEEEcccCcce--eeeeEEEEEecceEEEeccccccc
Confidence 3333211 10112455677888999999999986555543 34556666554 4666655666
Q ss_pred cCCEEEEEE--EeCCccceEEEEeecCccEEEEEccceEEE--EEeeEeEEEEEEEEccCceEEEEEeEEEEEEce-eeE
Q 000636 1007 PGASYMLTL--KGGPTVGVYVDYTSTDEEIATIHRSSGQLF--AISPGNTTLIATVFGNGDVVICQAFSSVKVGVP-SSV 1081 (1380)
Q Consensus 1007 ~Gs~~ql~~--~GGP~p~~~i~fss~n~~Va~V~~~sG~Vt--a~s~G~t~It~~~~~~~g~~v~~~~~~V~V~~l-~~v 1081 (1380)
+|....+++ ..|+ +....|+..+..--..+. ...++ =...|.=.|+..+.+.=+. .+.+..|.|+.+ +|+
T Consensus 1881 ~n~~v~fsa~l~~GS--~Vtf~w~fGdgs~~~~t~-~~t~~HsY~~~G~Y~VtV~A~N~Vs~--~~a~~~V~Vle~V~gL 1955 (2740)
T TIGR00864 1881 IGEKVEFQILLAAGS--AVNFRLQIGGAAPEVLQP-GPRFSHSFPRVDDHMVNLRAKNEVSC--AQANLHIEVLEAVRGL 1955 (2740)
T ss_pred CCCEEEEEEEecCCC--ceEEEEEeCCCCceeecC-CCeEEeecCCCCcEEEEEEEEeccce--eeeeEEEEEEEeccce
Confidence 888876666 4565 788889988766433333 33443 2456777777777643121 245555666654 677
Q ss_pred EEEeecc-eeEeCcEEeEEEeccCCCeeeeceeeeEEEEEEcC
Q 000636 1082 TLNAQSD-QLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIED 1123 (1380)
Q Consensus 1082 ~I~~~~~-~l~~g~~~p~~~~g~~g~pfsf~~~~l~f~Ws~sd 1123 (1380)
.|...-. -+.+|+...+.+....|+|. .|.|....
T Consensus 1956 ~I~~~c~~~~~~g~~~tF~A~v~~g~~V-------~f~W~f~~ 1991 (2740)
T TIGR00864 1956 QIPDCCAAGIATGEEKNFTANVQRGKPV-------AFAWTFDL 1991 (2740)
T ss_pred EecCCcccceecCceEEEEEEEecCCce-------EEEEEeee
Confidence 7776533 38899998888887778885 49998763
No 12
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=77.04 E-value=20 Score=32.97 Aligned_cols=58 Identities=28% Similarity=0.314 Sum_probs=43.0
Q ss_pred cCeeEEccCCEEEEEEEeCCccceEEEEeecCccEEEEEc---cceEEEEEeeEeEEEEEEEEccCce
Q 000636 1000 PHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHR---SSGQLFAISPGNTTLIATVFGNGDV 1064 (1380)
Q Consensus 1000 P~~~tLv~Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V~~---~sG~Vta~s~G~t~It~~~~~~~g~ 1064 (1380)
++.+.|.+|.+..|.+.+.+ -.-.+.|++||.+.. ..=.|+|++.|.|++... +.+|+
T Consensus 2 ~~~l~l~~g~s~~l~~~~~~-----~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw--~~~~~ 62 (72)
T PF13629_consen 2 AQSLTLTVGQSRILRLPGPI-----TRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVW--DKDGR 62 (72)
T ss_pred CcEEEEeCCCEEEEEcCCCc-----EEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEE--CCCCC
Confidence 35688999999999985544 235578999999853 234579999999999665 45555
No 13
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=75.52 E-value=2.7e+02 Score=36.51 Aligned_cols=463 Identities=10% Similarity=0.091 Sum_probs=248.2
Q ss_pred EecCceEEEEEecCCcccccccceeEEEEEecCCcccccCceeeeeeec-CCCcEEEEEecccceEEEEEEEcccCCCCC
Q 000636 560 LVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSG-SSKNLYGVFCQTLGTFELVFKRGNLVGDDH 638 (1380)
Q Consensus 560 L~~GSs~~~~~~GGP~pw~~e~~~~~~~~~~~e~~~~~~~~~~~~~v~~-~~~~~~~V~C~~lGe~~l~~~vgN~~~~~n 638 (1380)
|.+|....+.+.+.-++ .+ -+|. +++++.|.. .++ .....+.-+..+.|+..|-+.++++-+..+
T Consensus 109 l~vGe~l~~~V~~~~e~-~L-YKF~-----I~~~~~w~~-------iqDYst~n~lsyt~~~~G~Y~ll~~~Kd~~S~~~ 174 (667)
T PRK14081 109 LNVGEKIEIKVDSNKEP-LM-YRYW-----IKEDNNWKL-------IKDYSTENSLSYTANKPGKYELLVECKRIDSTKD 174 (667)
T ss_pred ccCCCEEEEEEEeccCc-EE-EEEE-----EcCCCcEEE-------EEecCCcceEEEEecCCCcEEEEEEEecCCCccc
Confidence 56899988888877665 21 2332 334433333 121 123345557778899998888887766332
Q ss_pred CCCeeEEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeeeEEeeCCCeEEEEEEEEcCCCCeEeecCCc
Q 000636 639 PLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSL 718 (1380)
Q Consensus 639 p~Pav~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~l~v~vfD~~Gr~f~n~SSL 718 (1380)
.-..+.+.+.+....-+.|. . .. +... | +..|.++.+.+.+....||..
T Consensus 175 ---fDD~~~v~y~Vk~~~~v~I~---~------F~-~lns----------~--~i~~~eI~f~~~a~~~~g~~~------ 223 (667)
T PRK14081 175 ---FDDFKKVKFKVKEIDKVEIT---D------FK-CLNK----------E--LICDEELVFEVESVYEEDRTI------ 223 (667)
T ss_pred ---cCcceEEEEEcccCcceEEE---e------cc-ccCc----------c--eecCcEEEEEEEEEeCCCceE------
Confidence 22344455555555544443 0 01 0000 1 146889999988888777622
Q ss_pred eEEEEEcCCCcceEeecccccccCCCcceEEEEEeeeceeEEEEEEEee-EeeccCCc-cccccccccccceeeeEEEEE
Q 000636 719 CLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASG-FCDAKDGH-HSAQLLEISESFLTDAVRLQL 796 (1380)
Q Consensus 719 ~~~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~g-y~~~~l~~-~~~~~~~~~~~~l~~siel~l 796 (1380)
.+..-.-+.++...-..+... ...+--...+.|.=+|.+-+.. |......- +.+.+--.+..|+ -
T Consensus 224 LYKF~~i~~~G~~~~~qdYst------~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~v-------k 290 (667)
T PRK14081 224 LYKFVKIDSDGKQTCIQDYST------KNIVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDI-------K 290 (667)
T ss_pred EEEEEEECCCCCEEEecCccc------cceEEEEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCc-------E
Confidence 222211110111111111110 0001111245666666665541 11111000 0000000000111 1
Q ss_pred eeeeEEcCceeEEeeCCcceEEEEEcccee-EEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEE--EEcccCC
Q 000636 797 VSTLRVNPEYNLLFFNPDAKANLSIAGGSC-FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTV--YDVGLAP 873 (1380)
Q Consensus 797 v~~v~v~P~~~~i~n~p~~~~~l~i~gGSG-~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v--~D~cl~~ 873 (1380)
+.++.++.+.-.+-++ ...-+..+.||.+ .|.+.-.+..+... +=..++++.-+|...|...|.+ .|..-..
T Consensus 291 I~~~~~d~~s~ql~g~-~I~ika~a~GG~~llYrf~I~G~~~e~~----~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~ 365 (667)
T PRK14081 291 IRNFTTDLSSPQLTDT-DIELKAVAEGGKELLYRFIIKGKESEDS----GYIRNNIYTWKPKIAGKYSITLWVKDISSKG 365 (667)
T ss_pred EEEEEEcCCCCeecCc-eEEEEEEecCCCceEEEEEECCcEEeec----cccccceEEEeeCCCceEEEEEEEEcCcCcc
Confidence 2344444443333333 2333445678888 56665555443322 2233578999999999766555 5654332
Q ss_pred C--cceeEEEEEee-------eeEEEEEecceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCC
Q 000636 874 P--RAASALVQVAD-------VDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDD 944 (1380)
Q Consensus 874 ~--~~a~a~V~V~d-------i~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~ 944 (1380)
. ..-.+...|-+ |..|.++ -+-.+-+|+++.+.+.+.+..+ + +..+.+..+...++-..-
T Consensus 366 eyD~~~~v~f~i~~~~~~p~~I~~vl~d--~~~~~lvG~~i~i~v~a~gg~~--~------lY~f~ik~ng~~ve~~~Y- 434 (667)
T PRK14081 366 EYEDKSSIDYTIEEKSKEPIKIEDVILD--KGKHILKGEEIKIRVIAEGGTN--L------RYSFIIKKDGKEEEKIDY- 434 (667)
T ss_pred cccceEEEEEEEcccCCCCeEEEEEEEC--CCCceEeCCeEEEEEEecCCCe--E------EEEEEEEECCEEEEEeec-
Confidence 2 22233344433 2333333 2234889999999988755432 2 223344444554443321
Q ss_pred CCCCCCCCccccceEEEEEeeEEEEEEEEEEEccCcceEE--eecEEEEEe--CCCe----eecCeeEEccCCEEEEEEE
Q 000636 945 ATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEIL--SQPIRVEVY--APPR----IHPHDIFLVPGASYMLTLK 1016 (1380)
Q Consensus 945 ~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~~~~G~~i~--S~~~~I~Vf--pPLr----l~P~~~tLv~Gs~~ql~~~ 1016 (1380)
..+..+..++...|.-+|-+-++++-..+-. ...+.+.|+ .|.. |.|.+-....|..+.+.+.
T Consensus 435 ---------~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~ 505 (667)
T PRK14081 435 ---------GKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVI 505 (667)
T ss_pred ---------ccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEE
Confidence 2257899999999999999999976432211 123567777 4764 5687778899999887775
Q ss_pred --eCCccceEEEEeec-CccEEEEE---c-cceEEEEEeeEeEEEEEEEEccCceEE--EEEeEEEEE---EceeeEEEE
Q 000636 1017 --GGPTVGVYVDYTST-DEEIATIH---R-SSGQLFAISPGNTTLIATVFGNGDVVI--CQAFSSVKV---GVPSSVTLN 1084 (1380)
Q Consensus 1017 --GGP~p~~~i~fss~-n~~Va~V~---~-~sG~Vta~s~G~t~It~~~~~~~g~~v--~~~~~~V~V---~~l~~v~I~ 1084 (1380)
|| .+..++|-.. |.+...+. . ..=.+.....|.=+|.+-+-+...+.. +..++.+.| .+++..+|+
T Consensus 506 ~~~~--k~v~y~y~~~~NG~~v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~ 583 (667)
T PRK14081 506 IQNT--KDVLIKYILKINGHKVEETDYIKNKKYKFIPKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIK 583 (667)
T ss_pred EeCC--CeEEEEEEEEECCEEEEEeeccccceEEEeecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEE
Confidence 54 4667777654 55555552 1 133356889999999888876532211 233344443 345677788
Q ss_pred eecceeEeCcEEeEEEeccCCCe
Q 000636 1085 AQSDQLAVGHEMPIHPLFPEGDV 1107 (1380)
Q Consensus 1085 ~~~~~l~~g~~~p~~~~g~~g~p 1107 (1380)
+.-..+..|.++.+.+....|..
T Consensus 584 ~~~~~~~~n~~~t~~~~~~gg~~ 606 (667)
T PRK14081 584 TSKKKFKCNEEVTFSVKSEGGKD 606 (667)
T ss_pred eecceEEcCCeEEEEEEccCCCc
Confidence 78788999998888877665554
No 14
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=71.62 E-value=4.4e+02 Score=37.22 Aligned_cols=129 Identities=18% Similarity=0.215 Sum_probs=62.6
Q ss_pred EEEEEEEccCcceEEee--cEEEEEe-----CCCee-ecCeeEEc---cCCEEEEEE--EeCCc-cceEEEEeecCccEE
Q 000636 970 TLYVSARQQSGHEILSQ--PIRVEVY-----APPRI-HPHDIFLV---PGASYMLTL--KGGPT-VGVYVDYTSTDEEIA 1035 (1380)
Q Consensus 970 tL~as~~~~~G~~i~S~--~~~I~Vf-----pPLrl-~P~~~tLv---~Gs~~ql~~--~GGP~-p~~~i~fss~n~~Va 1035 (1380)
+|++.+.| +||.-.|. +..|||. .|+.+ .|..+|+. |+.....++ .|.-. ++..++|+-....=-
T Consensus 445 tl~IrAqD-ggrPpLsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG~~pf 523 (2531)
T KOG4289|consen 445 TLRIRAQD-GGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAGVGPF 523 (2531)
T ss_pred EEEEEccc-CCCCCccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeeccCCCe
Confidence 33344433 55543333 3456665 56554 56666655 666655444 34222 267888887655444
Q ss_pred EEEccceEEEEEee-EeEEEE-----EEEEccC-ceEEEEEeEEEEEEcee--eEEEEeecceeEeCcEEeEE
Q 000636 1036 TIHRSSGQLFAISP-GNTTLI-----ATVFGNG-DVVICQAFSSVKVGVPS--SVTLNAQSDQLAVGHEMPIH 1099 (1380)
Q Consensus 1036 ~V~~~sG~Vta~s~-G~t~It-----~~~~~~~-g~~v~~~~~~V~V~~l~--~v~I~~~~~~l~~g~~~p~~ 1099 (1380)
.|+..+|.|++-+. -+-++. ..+.+.. -.+.....+.|.|.... .=+...+...++...+||+.
T Consensus 524 ~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvg 596 (2531)
T KOG4289|consen 524 QINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVG 596 (2531)
T ss_pred eEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCcccc
Confidence 55545787764322 221111 1111111 11222333444444432 33445566677777777663
No 15
>PF13584 BatD: Oxygen tolerance
Probab=66.17 E-value=60 Score=40.84 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred cceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEE-
Q 000636 894 GEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLY- 972 (1380)
Q Consensus 894 ~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~- 972 (1380)
.++.++.+|..+.+.+++-+ ++..++.....-+++.-...++..++.+... .....-.|.+++.+.|.-+|=
T Consensus 19 vd~~~v~~ge~~~l~i~~~~-~~~~~~~p~l~~f~v~~~~~s~~~~~inG~~------~~~~~~~~~l~p~~~G~~~IP~ 91 (484)
T PF13584_consen 19 VDRNEVGLGETFQLTITING-DGDDPDLPELDGFEVLGPSQSSSTSIINGKV------SSSTTYTYTLQPKKTGTFTIPP 91 (484)
T ss_pred ECCcEEcCCCEEEEEEEEec-CcccCCCCCCCCeEEcceEEEEEEEEecCce------EEEEEEEEEEEecccceEEEce
Confidence 45456999999999999976 6677777665444542111112333433220 112345789999999999973
Q ss_pred EEEEccCcceEEeecEEEEEeCCCe
Q 000636 973 VSARQQSGHEILSQPIRVEVYAPPR 997 (1380)
Q Consensus 973 as~~~~~G~~i~S~~~~I~VfpPLr 997 (1380)
+++. -.|+.+.|.|+.|+|-+.-.
T Consensus 92 ~~v~-v~Gk~~~S~pi~i~V~~~~~ 115 (484)
T PF13584_consen 92 FTVE-VDGKTYKSQPITIEVSKASQ 115 (484)
T ss_pred EEEE-ECCEEEeecCEEEEEEeccc
Confidence 3332 27899999999999987643
No 16
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=61.50 E-value=85 Score=30.98 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=47.4
Q ss_pred EEEEecceEEEecCcEEEEEEEEee---------cCCCEEecCCceeeEEEEEeecc-EEEEEeCC-CCCCCCCCccccc
Q 000636 889 IKIMSGEEISLMEGRSQSIDLMAGI---------DDGSTFDSFQYTYMDIRVHIEDH-IVELIDDD-ATSSPDGGYFSMS 957 (1380)
Q Consensus 889 I~v~~~~~i~vevG~tv~~~v~v~d---------~~g~~f~~~~~~~m~l~l~~~~~-iv~l~~~~-~~s~~~~~~~~~~ 957 (1380)
|+|.+|.. ...|..+++.+.+.. .+|+...+.+..- +.+..+.. +++..-.. ..-|| .-
T Consensus 1 mrir~p~~--~~~g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~--v~v~~ng~~v~~~~~~~siS~NP------~l 70 (100)
T PF08770_consen 1 MRIRVPKA--AKKGGVVEVKALISHPMETGLRKDQTGKYIPAHFIEE--VEVTYNGKPVFRADWGPSISENP------YL 70 (100)
T ss_dssp EEEE-SSC--EETTEEEEEEEEE----B-S-BB-TTS-BB--B-EEE--EEEEETTEEEEEEEE-TTB-SS-------EE
T ss_pred Ceeecccc--ccCCCcEEEEEEEECCCccccccCCCCCCCChHheEE--EEEEECCEEEEEEEeCCcccCCC------cE
Confidence 45666665 688999999888854 3344444455443 44444555 55554321 10011 34
Q ss_pred eEEEEEeeEEEEEEEEEEEccCcceEE
Q 000636 958 SFKIMAKHLGITTLYVSARQQSGHEIL 984 (1380)
Q Consensus 958 ~~~V~g~s~G~ttL~as~~~~~G~~i~ 984 (1380)
+|.++|..-| +|++...|..|++..
T Consensus 71 ~F~~~~~~~g--~l~v~~~Dn~G~~~~ 95 (100)
T PF08770_consen 71 RFSFKGKKSG--TLTVTWTDNKGNSFS 95 (100)
T ss_dssp EEEEEESSSE--EEEEEEEETTS-EEE
T ss_pred EEEEecCCCc--EEEEEEEECCCCEEE
Confidence 7899999999 777787788888654
No 17
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=52.54 E-value=3.8e+02 Score=37.21 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=94.5
Q ss_pred eeEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCcccc
Q 000636 877 ASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSM 956 (1380)
Q Consensus 877 a~a~V~V~di~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~ 956 (1380)
-.|.|.+++.........+ ..+.-|+++-+.-.+- +.++..-...-|+.-+..++.++.+.... + +
T Consensus 131 r~a~v~~a~~~~f~~~~~~-~t~~~g~ta~f~c~vn---~e~~p~i~w~kn~~pl~~~~r~i~lpsG~-L-----~---- 196 (1381)
T KOG4221|consen 131 RTAKVALAGLADFALQPES-TTLLYGQTALFSCEVN---AEPVPTIMWLKNDQPLPLDSRVIVLPSGA-L-----E---- 196 (1381)
T ss_pred ceEEEEecccCccccCccc-eeEecCCcEEEEEEEc---CccCceeEEecccccccCCCcEEEcCCCc-E-----E----
Confidence 4677888888777776433 3588899988887553 33333222222333233333333321100 0 0
Q ss_pred ceEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEe-CC-------CeeecCeeEEccCCEEEEEEEeCCccceEEEEe
Q 000636 957 SSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVY-AP-------PRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYT 1028 (1380)
Q Consensus 957 ~~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~Vf-pP-------Lrl~P~~~tLv~Gs~~ql~~~GGP~p~~~i~fs 1028 (1380)
--.+.....|....+|+- ++..-+|+...+.|- .| |--.|+..+..-|..+.|.+.----|...|.|-
T Consensus 197 -I~~~qp~d~g~yrc~vt~---g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wl 272 (1381)
T KOG4221|consen 197 -ISGLQPSDTGEYRCVVTG---GASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWL 272 (1381)
T ss_pred -ecccccCCCceEEEEEec---CCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEe
Confidence 000122223444444443 222223455555554 22 234588888999999999886433345678998
Q ss_pred ecCccEEEEEccceEEEEEee-EeEEEEEEEEcc-CceEEEE---------EeEEEEEEceeeE
Q 000636 1029 STDEEIATIHRSSGQLFAISP-GNTTLIATVFGN-GDVVICQ---------AFSSVKVGVPSSV 1081 (1380)
Q Consensus 1029 s~n~~Va~V~~~sG~Vta~s~-G~t~It~~~~~~-~g~~v~~---------~~~~V~V~~l~~v 1081 (1380)
- |.....+|. .+-.-+ |..=+...+.+. .|+..|. +.++|+|..+-++
T Consensus 273 r-ng~~i~~ds----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~ 331 (1381)
T KOG4221|consen 273 R-NGEKISVDS----YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGF 331 (1381)
T ss_pred e-CCeeeeecc----eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCC
Confidence 7 888778853 222222 222233444432 4666554 4556888776544
No 18
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=49.31 E-value=1.7e+02 Score=29.71 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=68.2
Q ss_pred ceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEE
Q 000636 895 EEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVS 974 (1380)
Q Consensus 895 ~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as 974 (1380)
++-..++|+++++.+..-...| .+-+.+...+.++....... ......-.|.++..-.+...|.+.
T Consensus 6 ~~~~~~~Ge~~~v~v~~~~~~~---------~~~~~v~s~g~I~~~~~~~~-----~~~~~~~~~~v~~~~~P~~~v~~~ 71 (136)
T PF07703_consen 6 DKDSYKPGETAKVTVQSPFPNG---------TFLYLVESRGKIVSTGSVEL-----KNGSTTFEFPVTPDMAPNFYVLAY 71 (136)
T ss_dssp -SSSB-TTSEEEEEEEEESCES---------EEEEEEEETTEEEEEEEEEC-----TTTSSEEEEEE-GGGTSEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEcCCCcc---------EEEEEEEECCeEEEEEEEEe-----cCCcEEEEEecchhcCCcEEEEEE
Confidence 3334899999999987754311 12233333333444433210 011224567777777788888888
Q ss_pred EEcc-CcceEEeecEEEEEeCC----CeeecCeeEEccCCEEEEEEEeCCccceEEEE
Q 000636 975 ARQQ-SGHEILSQPIRVEVYAP----PRIHPHDIFLVPGASYMLTLKGGPTVGVYVDY 1027 (1380)
Q Consensus 975 ~~~~-~G~~i~S~~~~I~VfpP----Lrl~P~~~tLv~Gs~~ql~~~GGP~p~~~i~f 1027 (1380)
+-.. .|+ +.+....|.|=+. +.+.+..-...||+..++.++++| ++.+-.
T Consensus 72 ~v~~~~g~-~~~~s~~i~V~~~~~~~v~l~~~~~~~~Pg~~~~~~i~~~~--~s~v~l 126 (136)
T PF07703_consen 72 YVRPADGE-VVADSVWIEVEPCFELKVELTASPDEYKPGEEVTLRIKAPP--NSLVGL 126 (136)
T ss_dssp EETTCTCE-EEEEEEEEEBGCSGSSSEEEEESSSSBTTTSEEEEEEEEST--TEEEEE
T ss_pred EEcCCCCe-EEEEEEEEEecccccceEEEEEecceeCCCCEEEEEEEeCC--CCEEEE
Confidence 8654 444 4567777777763 235565556779999999999965 555543
No 19
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=48.38 E-value=52 Score=31.27 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=43.7
Q ss_pred CceeEEeeCC----cceEEEEEccceeEEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEEEEc
Q 000636 804 PEYNLLFFNP----DAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDV 869 (1380)
Q Consensus 804 P~~~~i~n~p----~~~~~l~i~gGSG~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v~D~ 869 (1380)
++...++..| ..+-.+++.+|.+.+.|..++.-+.+.. . .+++...|..+|..+|+|.|-
T Consensus 17 ~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~~~g~~~--~----~~~~~~~~~~~G~h~l~vvD~ 80 (89)
T PF06832_consen 17 PDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGEPLGTTQ--P----GHQLFWQPDRPGEHTLTVVDA 80 (89)
T ss_pred CCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCEEcccCC--C----CCeEEeCCCCCeeEEEEEEcC
Confidence 3445566665 3455678889999999999996654321 1 245888888999999999985
No 20
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=45.17 E-value=1.1e+02 Score=29.38 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=43.5
Q ss_pred CCeEEEEEEEEcCCCCeEeecCCceEEEEEcCCCcceEeecccccccCCCcceEEEEEe-eeceeEEEEEEEeeEe
Q 000636 695 GQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQ-NESGLCVVRATASGFC 769 (1380)
Q Consensus 695 ~~~~~l~v~vfD~~Gr~f~n~SSL~~~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~-~~~G~~~I~at~~gy~ 769 (1380)
.....|.+.+.|++|++.-+ ..+.|+.+.. ....++.... .-+..|.- ...++ ...|..+|+|++.|+.
T Consensus 17 ~d~~~i~v~v~D~~Gnpv~~---~~V~f~~~~~-~~~~~~~~~~-~Td~~G~a-~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 17 SDAITLTATVTDANGNPVAG---QEVTFTTPSG-GALTLSKGTA-TTDANGIA-TVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cccEEEEEEEECCCCCCcCC---CEEEEEECCC-ceeeccCCee-eeCCCCEE-EEEEECCCCcEEEEEEEECCCc
Confidence 46788999999999998866 4699998863 2222322111 12223332 22233 5789999999987754
No 21
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=38.94 E-value=1.2e+02 Score=28.90 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=39.2
Q ss_pred eeEEEEEEeccCCCCCceEEEEecCceeEEEeeCc--eEEeccCceEEEEEEeccCC
Q 000636 329 YQEVELMATGGCAKTSSDYKWFSSDMATVSITASG--VVQAKKPGKATVKVVSIFDS 383 (1380)
Q Consensus 329 ~q~~~L~a~GGsg~~~~~y~WsSsn~~Va~V~~~G--vvt~~~~G~t~V~a~d~~n~ 383 (1380)
.+.+.|+|.||.+ .+.|.-++.-+.+..... .......|.-+|+|.|....
T Consensus 31 ~~~l~l~a~~~~~----~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGGRG----PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCCCC----cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcCCCC
Confidence 5579999999988 999999998886555443 23333789999999886543
No 22
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=38.38 E-value=3.5e+02 Score=25.55 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=42.9
Q ss_pred EEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEE-----eCCCCCCCCCCccccceEEEEEeeEEEEEEE
Q 000636 898 SLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELI-----DDDATSSPDGGYFSMSSFKIMAKHLGITTLY 972 (1380)
Q Consensus 898 ~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~-----~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~ 972 (1380)
.+.+|++..+.+..--.+|-. |.+..+.+.+.+. +.+..+...|. .+...|.++|++.|+++|.
T Consensus 2 ~v~~g~~~~I~L~~npstGY~----------W~~~~~~~~l~l~~~~~~~~~~~~~~vG~-~g~~~f~f~a~~~G~~~i~ 70 (92)
T PF09394_consen 2 TVKVGDTFEIELPENPSTGYS----------WSLSSDSDGLQLVSEEYIPDNSPSGLVGA-PGTRTFTFKALKPGTTTIK 70 (92)
T ss_dssp EEETTSEEEEEEEEBCCGTBE----------EEECTSTTTEEEEEEEEEESSTSSTSSTS-SEEEEEEEEESSSEEEEEE
T ss_pred eecCCCEEEEEECCCCCCCeE----------EEEecCCCeEEEcCCcEEeCCCCcCCCCC-CcEEEEEEEEecCeeEEEE
Confidence 478899888888776666643 3333322333332 22110112232 3456799999999999999
Q ss_pred EEEEc
Q 000636 973 VSARQ 977 (1380)
Q Consensus 973 as~~~ 977 (1380)
+.+..
T Consensus 71 ~~y~r 75 (92)
T PF09394_consen 71 FEYRR 75 (92)
T ss_dssp EEEEB
T ss_pred EEEEC
Confidence 99974
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=36.99 E-value=3.2e+02 Score=35.16 Aligned_cols=165 Identities=16% Similarity=0.264 Sum_probs=80.4
Q ss_pred cEEEEeCcEEEEEEEEEecCCcccccCCCcceEEEEEeCCccEEEeccCCCCcccccc------CCccccccCCCCCcee
Q 000636 406 PVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKL------GTVEHDISLHGPPCSW 479 (1380)
Q Consensus 406 ~~E~~vg~~l~l~v~~~~~~G~~Fs~c~~~~~~v~w~~~~~if~~~~~~~~~~~~~~~------~~~~~~~~~~g~~C~~ 479 (1380)
.+-+.+|..+.+.-.++.+ ++-++.++|..|+++..-++..+...+..+. +++| | .+ +=.-
T Consensus 512 ~~~al~g~nirftC~a~ss--------sasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~-~---~~-~L~L 578 (873)
T KOG4194|consen 512 TVSALIGENIRFTCNAYSS--------SASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREE-Y---TA-ILHL 578 (873)
T ss_pred HhhhhhccceEEEEEeccC--------CCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhh-h---hh-eeee
Confidence 4445557766666555543 2335779999777655433322222222211 1111 1 11 1122
Q ss_pred EEEEEeeeeeEEEEEEEeeccccccccCCCceEEEEEEEEEeeCCceeeecCCCCCCCCceeccccccccccccccceEE
Q 000636 480 AHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLY 559 (1380)
Q Consensus 480 ~~v~a~~~G~t~l~vs~~~~~~~~~~~~~g~~~l~asi~IaaY~pL~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~ev~ 559 (1380)
..+.-...|+..-.|+=.- |+. .+..+++.+|.--+..+. | .++.
T Consensus 579 ~nVt~td~grYQCVvtN~F----------GSt-ysqk~KltV~~~PsFtkt-----------------------P-~dlt 623 (873)
T KOG4194|consen 579 DNVTFTDEGRYQCVVTNHF----------GST-YSQKAKLTVNQAPSFTKT-----------------------P-EDLT 623 (873)
T ss_pred eeeecccCceEEEEEeccc----------Ccc-hhheeEEEeeccCccccC-----------------------c-ccce
Confidence 3355566788777777322 333 334444455555555532 4 3667
Q ss_pred EecCceEEE--EEecCCcc---cccc--ccee----EEEEEecCCcccccCceeeeeeecCCCcEEEEEecc-cce
Q 000636 560 LVPRTHVDV--LLVGGPEP---WEED--VDFI----ETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQT-LGT 623 (1380)
Q Consensus 560 L~~GSs~~~--~~~GGP~p---w~~e--~~~~----~~~~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~-lGe 623 (1380)
|-.|..-.+ --+|-|.| |..+ .+|- +...+..++. -+-+..+...+++.|+-+++. .|+
T Consensus 624 l~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd-----~f~Itnvk~eD~GiYtC~A~n~AG~ 694 (873)
T KOG4194|consen 624 LRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD-----VFFITNVKIEDQGIYTCTAQNVAGQ 694 (873)
T ss_pred eecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC-----EEEEecccccccceeEEeeeccccc
Confidence 777765554 45788888 4443 3441 2233443321 122223344678888444432 454
No 24
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=35.91 E-value=1.7e+02 Score=27.73 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=28.0
Q ss_pred EEeeeCcEEEEEEE-------EEcCCCcccccccceeEEEEEecccceEEEEeecCC--CceEEEEe
Q 000636 1322 IHLAVGAECEIPIS-------YYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNG--SGKIYLKV 1379 (1380)
Q Consensus 1322 ~~lpvG~~~~l~v~-------~~D~~G~~F~~~~~~~~l~~~~nr~dl~~i~~~~~~--~~~~~~~~ 1379 (1380)
..++.|+..+|.|. +.-+.|+.|..+.. ...+.++--=...+.=...+ +|.|+|||
T Consensus 18 l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~--~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 18 LQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQ--EETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEESSS--EEEEEE-TT--EEEETTTT-------E--EEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEeCCCCEEEEEEECCCCCEEEEecCCchhhheee--EEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 57899999999887 66677788886665 33555442222222222223 89999986
No 25
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=33.45 E-value=56 Score=27.79 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.4
Q ss_pred EEeeeCcEEEEEEEEEcCCCcccccccceeEEEEEecccc
Q 000636 1322 IHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHD 1361 (1380)
Q Consensus 1322 ~~lpvG~~~~l~v~~~D~~G~~F~~~~~~~~l~~~~nr~d 1361 (1380)
.-..+|.++.|.|+..|..|++-. ...|.+.|.|
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~------n~~f~l~r~~ 40 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVP------NAPFTLTRGD 40 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcC------CceEEEEecC
Confidence 345789999999999999999988 2445555554
No 26
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=31.53 E-value=2.2e+03 Score=32.91 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=138.4
Q ss_pred ceEEEEEEEEcccCCCcceeEEEEEeeee---------EEEEEecceEEEecCcEEEEEEEEeecCCC-EE--e--cCCc
Q 000636 859 LGTALVTVYDVGLAPPRAASALVQVADVD---------WIKIMSGEEISLMEGRSQSIDLMAGIDDGS-TF--D--SFQY 924 (1380)
Q Consensus 859 ~G~~~v~v~D~cl~~~~~a~a~V~V~di~---------~I~v~~~~~i~vevG~tv~~~v~v~d~~g~-~f--~--~~~~ 924 (1380)
.=...|+++|..++..+.+...|.|-||. .-.+..++- ..+|+.+ +.+++-|++.. -+ . ..+.
T Consensus 2144 ~h~l~ieAtd~~~p~~Aea~VeIiV~dIndn~PvFeqlsYt~sisE~--s~igt~v-iqilATdsDsn~~isYsl~g~s~ 2220 (4289)
T KOG1219|consen 2144 LHELLIEATDAGIPLSAEAKVEIIVGDINDNPPVFEQLSYTISISEN--SKIGTKV-IQILATDSDSNREISYSLEGNSE 2220 (4289)
T ss_pred ceEEEEEEeccCCCcceeeEEEEEecccCCCCchhheeeEEEEccCC--CccCceE-EEEEeccCCCCCceEEEeecCCc
Confidence 34788999999998666666667777773 222333443 4566554 56677664431 00 0 0111
Q ss_pred eeeEEEEEeeccEEEEEe-CCCCCCCCCCccccceEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEe-------CCC
Q 000636 925 TYMDIRVHIEDHIVELID-DDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVY-------APP 996 (1380)
Q Consensus 925 ~~m~l~l~~~~~iv~l~~-~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~Vf-------pPL 996 (1380)
.--+++++.+..-+++.. .+ |.+ ...-+|.|+|.. +|+.+ |..+.++|. ||.
T Consensus 2221 ~sk~f~In~sTG~it~~g~ld-----yE~-~q~f~~fvratd-------------ggk~l-Sseviv~V~VeD~Ndn~Pe 2280 (4289)
T KOG1219|consen 2221 ISKPFRINVSTGWITVAGKLD-----YEE-NQEFRFFVRATD-------------GGKPL-SSEVIVEVHVEDFNDNPPE 2280 (4289)
T ss_pred cccceEEecccceEEEeeecC-----hhh-cceEEEEEEEcc-------------CCCcc-cccEEEEEEehhcCCCCch
Confidence 112234444444444432 11 111 111133344433 44443 333333333 666
Q ss_pred eeecCeeEEccCCE----EEEEEEe-CCcc--ceEEEEeecCccEEEEEccceEEE----EEeeEeEEEEEEEEccCceE
Q 000636 997 RIHPHDIFLVPGAS----YMLTLKG-GPTV--GVYVDYTSTDEEIATIHRSSGQLF----AISPGNTTLIATVFGNGDVV 1065 (1380)
Q Consensus 997 rl~P~~~tLv~Gs~----~ql~~~G-GP~p--~~~i~fss~n~~Va~V~~~sG~Vt----a~s~G~t~It~~~~~~~g~~ 1065 (1380)
..+|..-+-++... +-..+.- .+-. ....+|. +.+-.--+ .+|.+| .++.+.+..-.++...+| +
T Consensus 2281 f~q~~~ea~vsd~a~~g~fit~v~a~D~Dssd~lk~ey~--~~~~l~~s-~~G~iTlfNl~k~~l~~s~~lrv~vsD~-v 2356 (4289)
T KOG1219|consen 2281 FNQRNYEAFVSDPARSGHFITVVNAHDLDSSDHLKLEYN--SNHFLILS-ENGIITLFNLLKSPLQTSYPLRVTVSDG-V 2356 (4289)
T ss_pred hccccceeecCCCccceeEEEEEEeccCCccchhhhhhc--ccceeeec-cCceEEehhhcccccccccceeeeeccC-c
Confidence 66665554443222 2211111 1111 1234444 23322223 599999 889998888777766666 2
Q ss_pred EEEEeEEEEEEceeeEEE-----EeecceeEeCcEEeEEEeccCCCeeeeceeee--EEEEEEcCCceEEEEeccccccc
Q 000636 1066 ICQAFSSVKVGVPSSVTL-----NAQSDQLAVGHEMPIHPLFPEGDVFSFYELCR--NYNWTIEDEKILGFWLGDQLHSE 1138 (1380)
Q Consensus 1066 v~~~~~~V~V~~l~~v~I-----~~~~~~l~~g~~~p~~~~g~~g~pfsf~~~~l--~f~Ws~sd~~vl~~~~~~~~~~e 1138 (1380)
-+++.+|.+...++=.. .+++..++.-...+.-..|+.|+--. +...- +-+..+...+.+........+
T Consensus 2357 -~~at~~vl~~~~~~n~~~~lveka~l~Tv~~~~~~~~~~f~~~gt~~~-~si~s~~sd~~~in~~GqI~t~~kld~e-- 2432 (4289)
T KOG1219|consen 2357 -FRATMEVLFHPHSRNHFSELVEKADLVTVVEHDEQEDADFGAYGTSIY-YSINSRASDHFEINKSGQIKTLSKLDRE-- 2432 (4289)
T ss_pred -ceeeeEEEEEecCcccchhhhhccceeEEEEecCccccccccCCceee-eeechhccCceeECCCccEEeeehhhhc--
Confidence 36777877776654221 12222232222222333444443322 11111 223344444544443332111
Q ss_pred ccccccccccceeecccccccccccEEEEEEee-ceEEEE-EEEEEEeccCC--CCccceeeeeeEEE
Q 000636 1139 NQDLQSAASGEIQFSNDLDKKELGFIKTLYGRS-AGRTDV-ATTFSCDFVSD--SYSESRIYSASISL 1202 (1380)
Q Consensus 1139 ~~~~~~~~~g~i~~~~~~~~~~~~f~~~v~~~~-~G~t~I-~v~v~~~~~~~--g~~~~~~~~~~i~i 1202 (1380)
. +.+.-++++|+++. .||+.+ +|++...|... -|+....|+.+|+=
T Consensus 2433 ~------------------s~~~vi~i~v~a~Da~gr~af~tvti~ltDiNDnpPqF~a~~Y~~nI~e 2482 (4289)
T KOG1219|consen 2433 Y------------------SEELVIIIAVMAFDAGGRVAFCTVTIILTDINDNPPQFDAQLYRVNITE 2482 (4289)
T ss_pred c------------------CceEEEEEEEEEecCCCeEEEEEEEEEEEecCCCCccccceeEEEEeec
Confidence 1 45667888888886 455332 34444333322 25555666655554
No 27
>PRK10177 putative invasin; Provisional
Probab=31.16 E-value=1.1e+02 Score=37.82 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.8
Q ss_pred EEEEEEEEEccCcceEEeecEEEEEeCCCeeecCe
Q 000636 968 ITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHD 1002 (1380)
Q Consensus 968 ~ttL~as~~~~~G~~i~S~~~~I~VfpPLrl~P~~ 1002 (1380)
.-+|++++.|..|++.+|..++|.|-+|+.+.|..
T Consensus 425 ~Y~ls~~a~D~kGn~~~Sn~i~v~Vt~p~~~~~~~ 459 (465)
T PRK10177 425 RWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSND 459 (465)
T ss_pred eEEEEEEEEECCCCccccceEEEEEeCCccccCCC
Confidence 44677888899999999999999999999876643
No 28
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=30.21 E-value=2.8e+02 Score=26.49 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=39.3
Q ss_pred cEEEEEEEEeecCCCEEecCCceeeEEEEEeecc-EEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEEEE
Q 000636 903 RSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDH-IVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR 976 (1380)
Q Consensus 903 ~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~-iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~ 976 (1380)
....+.+++.|.+|.+..... + .+.++.. .+.+.......+. .+-....+++...|..++++++.
T Consensus 18 d~~~i~v~v~D~~Gnpv~~~~---V--~f~~~~~~~~~~~~~~~~Td~----~G~a~~~l~~~~~G~~~vta~~~ 83 (92)
T smart00634 18 DAITLTATVTDANGNPVAGQE---V--TFTTPSGGALTLSKGTATTDA----NGIATVTLTSTTAGVYTVTASLE 83 (92)
T ss_pred ccEEEEEEEECCCCCCcCCCE---E--EEEECCCceeeccCCeeeeCC----CCEEEEEEECCCCcEEEEEEEEC
Confidence 678899999999999998632 3 3333343 2222111100011 23346667788888888888874
No 29
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=29.67 E-value=94 Score=37.09 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=45.6
Q ss_pred ceeEeCcEEeEEEeccCCCeee-----eceeeeEEEEEEcCCc-eEEEEecccccccccccccccccceeeccccccccc
Q 000636 1088 DQLAVGHEMPIHPLFPEGDVFS-----FYELCRNYNWTIEDEK-ILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKEL 1161 (1380)
Q Consensus 1088 ~~l~~g~~~p~~~~g~~g~pfs-----f~~~~l~f~Ws~sd~~-vl~~~~~~~~~~e~~~~~~~~~g~i~~~~~~~~~~~ 1161 (1380)
+++.+|....+.....+|.+|+ +.+..++=+|++.+.+ .+++... |
T Consensus 171 ~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~---------------g------------- 222 (375)
T PRK02654 171 TKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSED---------------G------------- 222 (375)
T ss_pred CcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCC---------------C-------------
Confidence 5788888888887878888886 2223356689988654 3333222 1
Q ss_pred ccEEEEEEeeceEEEEEEEEEE
Q 000636 1162 GFIKTLYGRSAGRTDVATTFSC 1183 (1380)
Q Consensus 1162 ~f~~~v~~~~~G~t~I~v~v~~ 1183 (1380)
.+.|+.||.+||.+++..
T Consensus 223 ----~~~al~pgd~ti~~~ipg 240 (375)
T PRK02654 223 ----TIEALAPGDATIQGTIPG 240 (375)
T ss_pred ----cEEEecCCceEEEEeecc
Confidence 568899999999999975
No 30
>PF13584 BatD: Oxygen tolerance
Probab=29.61 E-value=1e+03 Score=29.84 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=38.5
Q ss_pred EEEeeccceEEEEEEEEcccCCC--cceeEEEEEeee--------------eEEEEEecceEEEecCcEEEEEEEEeecC
Q 000636 852 LMLSPKGLGTALVTVYDVGLAPP--RAASALVQVADV--------------DWIKIMSGEEISLMEGRSQSIDLMAGIDD 915 (1380)
Q Consensus 852 ~~vtp~~~G~~~v~v~D~cl~~~--~~a~a~V~V~di--------------~~I~v~~~~~i~vevG~tv~~~v~v~d~~ 915 (1380)
+.+.|++.|..+|=..-+...+. ......|.|.+- ..+++.+ ++-++-+|+.+.+.+++|...
T Consensus 77 ~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~~~~~~~~~~~~~~~~~~l~~~v-~~~~~Yvge~v~lt~~ly~~~ 155 (484)
T PF13584_consen 77 YTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSKASQSPSQPPSNADDDVFLEAEV-SKKSVYVGEPVILTLRLYTRN 155 (484)
T ss_pred EEEEecccceEEEceEEEEECCEEEeecCEEEEEEecccCCccccccccccEEEEEEe-CCCceecCCcEEEEEEEEEec
Confidence 56777777776665444322231 122344555433 2344443 333588999999999999865
Q ss_pred CC
Q 000636 916 GS 917 (1380)
Q Consensus 916 g~ 917 (1380)
.-
T Consensus 156 ~~ 157 (484)
T PF13584_consen 156 NF 157 (484)
T ss_pred Cc
Confidence 54
No 31
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=29.58 E-value=2.1e+02 Score=28.31 Aligned_cols=77 Identities=9% Similarity=0.150 Sum_probs=37.3
Q ss_pred cEEEEEEEEeecCCCEEecCC-ceeeEEEEEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEEEEccCcc
Q 000636 903 RSQSIDLMAGIDDGSTFDSFQ-YTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGH 981 (1380)
Q Consensus 903 ~tv~~~v~v~d~~g~~f~~~~-~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~~~~G~ 981 (1380)
.+-.+.+++.|.+|+++.--. ..| . + +..-++|-+.. |..+.=...++|-..|..+|+-++ .|+
T Consensus 21 dta~LTfta~D~~g~pvsGl~~l~f---~-~-~g~~vtls~it-------E~~GvYtATl~Gt~~G~vtI~P~v---~G~ 85 (99)
T PF09134_consen 21 DTATLTFTARDANGNPVSGLSVLAF---V-Q-DGVPVTLSPIT-------ENPGVYTATLKGTSAGEVTITPQV---NGQ 85 (99)
T ss_dssp --EEEEEE-B-TTS-B--S--SEEE---E-E-EES--EE---E-------E-SS-EEEEEE-SS-EEEEEEEEE---TTE
T ss_pred ceEEEEEEEEcCCCCcccCceeEEE---E-c-cCCCcEEcccc-------ccCCEEEEEEEcccCceEEEEEee---CCE
Confidence 567788999999999997433 222 1 1 22234443332 111112345999999999999999 677
Q ss_pred eEEeecEEEEEeC
Q 000636 982 EILSQPIRVEVYA 994 (1380)
Q Consensus 982 ~i~S~~~~I~Vfp 994 (1380)
.+...+.++.-||
T Consensus 86 ~l~~~~~k~tl~~ 98 (99)
T PF09134_consen 86 PLATLQKKLTLIP 98 (99)
T ss_dssp E-GGG-EEEEEE-
T ss_pred EccccceeEEEee
Confidence 7766677777665
No 32
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=29.44 E-value=1.9e+03 Score=31.54 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred eCCcceEEEEEcccee---EEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEEEEcccCCC-cceeEEEEEeee
Q 000636 811 FNPDAKANLSIAGGSC---FLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPP-RAASALVQVADV 886 (1380)
Q Consensus 811 n~p~~~~~l~i~gGSG---~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v~D~cl~~~-~~a~a~V~V~di 886 (1380)
++|+....+.+.||++ .|.++. +++|+.+..--+. .++ ..=.+.+.++|+..+.. .+++.+|.|.|+
T Consensus 812 ~g~Ng~v~y~~qg~~d~p~~F~IEp-tSGviRtl~rLdR---E~~-----avy~L~a~avDrg~p~ls~~~eItvtvldv 882 (2531)
T KOG4289|consen 812 SGPNGRVYYTFQGGDDGPGDFYIEP-TSGVIRTLRRLDR---ENV-----AVYVLAAYAVDRGNPPLSAPVEITVTVLDV 882 (2531)
T ss_pred CCCCceEEEEecCCCCCCCceEEcc-Ccceeehhhhhcc---hhe-----eEEEEEEEEeeCCCCCcCCceEEEEEEEec
Confidence 5666665556666654 666663 3456533100110 001 11245667788888765 466667777776
Q ss_pred e---------EEEEEecceEEEecCcEEEE
Q 000636 887 D---------WIKIMSGEEISLMEGRSQSI 907 (1380)
Q Consensus 887 ~---------~I~v~~~~~i~vevG~tv~~ 907 (1380)
. ++++-+.+. .++|.++..
T Consensus 883 NDnaPvfe~~e~e~~I~en--spvgs~va~ 910 (2531)
T KOG4289|consen 883 NDNAPVFEQDELELFIEEN--SPVGSVVAL 910 (2531)
T ss_pred CCCCCCCCCcceeeEEeec--CccceeeEE
Confidence 3 555554444 677777653
No 33
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=28.51 E-value=1.6e+02 Score=28.23 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.0
Q ss_pred EeeeCcEEEEEEEEEcCCCcccc
Q 000636 1323 HLAVGAECEIPISYYDALGTPFH 1345 (1380)
Q Consensus 1323 ~lpvG~~~~l~v~~~D~~G~~F~ 1345 (1380)
...+|...+|.|..+|..|++..
T Consensus 16 ~~~~g~~~~F~V~~~d~~g~~~~ 38 (101)
T PF00630_consen 16 PAVVGEPATFTVDTRDAGGNPVS 38 (101)
T ss_dssp EEETTSEEEEEEEETTTTSSBEE
T ss_pred CeECCCcEEEEEEEccCCCCccc
Confidence 44899999999999999998776
No 34
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=28.44 E-value=2.9e+02 Score=26.16 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=27.3
Q ss_pred CeeecCeeEEccCCEEEEEEE--eCCccceEEEEeecCcc
Q 000636 996 PRIHPHDIFLVPGASYMLTLK--GGPTVGVYVDYTSTDEE 1033 (1380)
Q Consensus 996 Lrl~P~~~tLv~Gs~~ql~~~--GGP~p~~~i~fss~n~~ 1033 (1380)
+++.|+++++..|....|.+. |.| + .+.|...|..
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~--~i~W~~~~~~ 39 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-K--DISWFSPNGE 39 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-C--eEEEECCCCC
Confidence 467899999999999999985 655 3 6889864444
No 35
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=28.05 E-value=1e+02 Score=36.78 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=45.1
Q ss_pred eecCeeEEccCCEEEEEEE---eCCc---------cceEEEEeec-CccEEEEEccceEEEEEeeEeEEEEEEEEc
Q 000636 998 IHPHDIFLVPGASYMLTLK---GGPT---------VGVYVDYTST-DEEIATIHRSSGQLFAISPGNTTLIATVFG 1060 (1380)
Q Consensus 998 l~P~~~tLv~Gs~~ql~~~---GGP~---------p~~~i~fss~-n~~Va~V~~~sG~Vta~s~G~t~It~~~~~ 1060 (1380)
+.|.--.|.+|.+.++.+. |.|- .+..=.|... -++.+.|+. .|.++|++.|.++|.+++-+
T Consensus 166 ~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~-~g~~~al~pgd~ti~~~ipg 240 (375)
T PRK02654 166 SLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSE-DGTIEALAPGDATIQGTIPG 240 (375)
T ss_pred EcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECC-CCcEEEecCCceEEEEeecc
Confidence 4566666778888877775 3332 1223346654 567889998 99999999999999999965
No 36
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=27.30 E-value=1.4e+02 Score=27.36 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=37.9
Q ss_pred eecCeeEEccCCEEEEEEE---eCCccceEEEEeecCccEEEEEccceEEEEEeeEeEEEEEEEEccCceEEEEE
Q 000636 998 IHPHDIFLVPGASYMLTLK---GGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQA 1069 (1380)
Q Consensus 998 l~P~~~tLv~Gs~~ql~~~---GGP~p~~~i~fss~n~~Va~V~~~sG~Vta~s~G~t~It~~~~~~~g~~v~~~ 1069 (1380)
+.|+++++..|+...|.+. |.| ...+.|.-.+..+.. ....+....-|.-.|...-....|...|..
T Consensus 1 ~~p~~~~~~~G~~v~l~C~~~~g~p--~p~i~W~k~g~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 70 (86)
T cd05724 1 VEPSDTQVAVGEMAVLECSPPRGHP--EPTVSWRKDGQPLNL---DNERVRIVDDGNLLIAEARKSDEGTYKCVA 70 (86)
T ss_pred CCCccEEEeCCCCEEEEEECCCCCC--CCEEEEEECCEECCC---CCCCEEEccCCEEEEeECCcccCEEEEEEE
Confidence 3688999999999999985 344 557888765443321 123333333333333322223356666644
No 37
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=27.14 E-value=4.2e+02 Score=25.54 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred eeEEeCCCceEEeccCeEEEEEEEEEcCceeEEecCCCceEEEEeCCceEEEecCcceEEEEeeeeeEEEEEeccccCC-
Q 000636 86 AMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGH- 164 (1380)
Q Consensus 86 ~i~L~P~~~vyll~G~~i~y~v~~~~qg~~~~i~lPs~~y~w~~~n~~Va~vd~~~g~vta~~~G~t~V~l~d~n~~~~- 164 (1380)
+..+.++.++.+..|+.+.++... +|. |.+.+.|.-.+..+ ..+...-.-..-+.+.+++.+....+.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~--~G~------p~p~v~W~kdg~~l---~~~~~~~~~~~~~~s~L~I~~~~~~D~G 69 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKV--TGT------QPITCTWMKFRKQI---QEGEGIKIENTENSSKLTITEGQQEHCG 69 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEE--ccc------CCCceEEEECCEEe---cCCCcEEEEecCCeeEEEECCCChhhCE
Q ss_pred -------------cceEEEEEEcC
Q 000636 165 -------------TQVSSLNVVLP 175 (1380)
Q Consensus 165 -------------~~~~~i~Vv~P 175 (1380)
..++.|.|.++
T Consensus 70 ~Ytc~a~N~~G~~~~~~~l~V~~~ 93 (98)
T cd05762 70 CYTLEVENKLGSRQAQVNLTVVDK 93 (98)
T ss_pred EEEEEEEcCCCceeEEEEEEEecC
No 38
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.25 E-value=1.2e+03 Score=28.56 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred cCCeEEEEEeecccCCCCCCCccccCCCCeEEEEeCcEEEEEEEEecCCCCcceEEeccCCeEEEecCCcceEEEeeccC
Q 000636 174 LPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPN 253 (1380)
Q Consensus 174 ~P~~L~i~v~P~~~~~~~~~~~~~~~~~~~w~l~~G~~y~i~v~l~D~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~ 253 (1380)
++..+.+...|.. ++-.+.-+++.|..++++|.+--.. + -.++.-..-++++..| +. .
T Consensus 43 ~t~~~tltdvpvd-----------vlYD~~~y~isg~~etV~Vtl~G~n-s-~~~~~~~~~dFkV~AD------Lt---~ 100 (403)
T COG4856 43 ETYTLTLTDVPVD-----------VLYDSDKYFISGQPETVTVTLKGPN-S-IVLKSEKPEDFKVVAD------LT---H 100 (403)
T ss_pred ccccceeeeceeE-----------EEEccccccccCCceEEEEEEeCCc-c-eeeeeecCcCeEEEEE------hh---h
Confidence 4455556655542 2235567888999999999998654 2 2222211111222222 21 2
Q ss_pred ccceeeeeeecEEEEEeeeeeEEEEEEEEEEeccccceeeEEeeEEEEEEeeEEEeeccCCCccceEEeeCccCceeEEE
Q 000636 254 DLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVE 333 (1380)
Q Consensus 254 ~~ng~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~~~~~~~l~~~qev~i~~~i~l~~~~~~~~p~~illp~~~~~~q~~~ 333 (1380)
...|+|. .---++.+..|.+ +++.-.-. . ++.+-....-.||...+++....|- +=|..|..- .-+
T Consensus 101 a~~Gt~e--vkl~ve~l~~~lt-vsV~P~~~-------~-Vti~kk~tkk~~V~vei~~s~I~~g--y~i~~~~vs-Pkk 166 (403)
T COG4856 101 AGVGTHE--VKLQVEGLPDGLT-VSVNPEKA-------T-VTIEKKVTKKFPVSVEIDQSKIDPG--YSIEKPEVS-PKK 166 (403)
T ss_pred cCCCceE--eeeEeecCCCCce-EEEcccee-------E-EEEeeeeEEEEeeeEEEcHHHccCC--cCcCccccC-Cce
Confidence 2334442 1122455554431 11111111 1 2333333344455554332221111 112222110 235
Q ss_pred EEEeccCCCCCceEEEEecCceeEEEeeCceEEeccCceEEEEEEeccC
Q 000636 334 LMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFD 382 (1380)
Q Consensus 334 L~a~GGsg~~~~~y~WsSsn~~Va~V~~~Gvvt~~~~G~t~V~a~d~~n 382 (1380)
.+.+||.. .-.-=+.-+|.++.++.+...-.+.+.++|.|+..
T Consensus 167 VsVTg~~e------~i~~Id~v~a~v~~~~~~~~~~~~~v~vqa~Da~G 209 (403)
T COG4856 167 VSVTGAEE------TIDNIDHVKATVDTDEKIEGNFSSKVKVQAVDAKG 209 (403)
T ss_pred EEEeccHH------HHhhhhheEEEeccccccccceeeeEEEEEEcCCC
Confidence 67777765 22233456777777777777778999999999863
No 39
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=26.18 E-value=3.2e+02 Score=26.65 Aligned_cols=71 Identities=7% Similarity=0.104 Sum_probs=38.7
Q ss_pred EecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEEEE
Q 000636 899 LMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR 976 (1380)
Q Consensus 899 vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~ 976 (1380)
..-+....+.+++.|.+|.|+.-.. +.|....+...+.-.......+. .+...+.+++-..|..+++|++.
T Consensus 19 a~g~~~~tltatV~D~~gnpv~g~~---V~f~~~~~~~~l~~~~~~~~Td~----~G~a~~tltst~aG~~~VtA~~~ 89 (100)
T PF02369_consen 19 ADGSDTNTLTATVTDANGNPVPGQP---VTFSSSSSGGTLSPTNTSATTDS----NGIATVTLTSTKAGTYTVTATVD 89 (100)
T ss_dssp SSSSS-EEEEEEEEETTSEB-TS-E---EEE--EESSSEES-CEE-EEE-T----TSEEEEEEE-SS-EEEEEEEEET
T ss_pred eCCcCcEEEEEEEEcCCCCCCCCCE---EEEEEcCCCcEEecCccccEECC----CEEEEEEEEecCceEEEEEEEEC
Confidence 3456889999999999999996422 33421222223321100000011 23467889999999999999995
No 40
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=25.39 E-value=3.2e+02 Score=26.68 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=39.8
Q ss_pred eCCCeEEEEEEEEcCCCCeEeecCCceEEEEEcCCCcceEeeccc-ccccCCCcceEEEEEeeeceeEEEEEEEeeEe
Q 000636 693 ANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY-GSQKSASSWERFLVLQNESGLCVVRATASGFC 769 (1380)
Q Consensus 693 ~~~~~~~l~v~vfD~~Gr~f~n~SSL~~~W~~s~~~~la~~~~~~-~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~ 769 (1380)
.......|.+.+.|++|+++ .+..+.|.... ..+.+.... ...-|..|....-.-....|..+|+|++.|..
T Consensus 20 ~g~~~~tltatV~D~~gnpv---~g~~V~f~~~~--~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~ 92 (100)
T PF02369_consen 20 DGSDTNTLTATVTDANGNPV---PGQPVTFSSSS--SGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGS 92 (100)
T ss_dssp SSSS-EEEEEEEEETTSEB----TS-EEEE--EE--SSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEE
T ss_pred CCcCcEEEEEEEEcCCCCCC---CCCEEEEEEcC--CCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcc
Confidence 45677899999999999888 67799993221 124443220 01123344332222235899999999987654
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=21.92 E-value=4.7e+02 Score=30.97 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=49.2
Q ss_pred EecCCCceEEEEeCCceEEEecCcceEEEEeeeeeEEEEEeccccCCcceEEEEEEcCCeEE
Q 000636 118 VALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLW 179 (1380)
Q Consensus 118 i~lPs~~y~w~~~n~~Va~vd~~~g~vta~~~G~t~V~l~d~n~~~~~~~~~i~Vv~P~~L~ 179 (1380)
+..|.-|-.+.++-.+++--|+ +|++-|...|.-.|-+-|.+.-+..|-.++.+-+|..-+
T Consensus 129 lR~~~cqg~l~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 129 LRVKKCQGLLNLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred ecCCCCceEEecCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 3346777788888899999999 999999999999999999888777787777776544433
No 42
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=21.77 E-value=3.6e+02 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred CeeecCeeEEccCCEEEEEE--EeCCccceEEEEeecCcc
Q 000636 996 PRIHPHDIFLVPGASYMLTL--KGGPTVGVYVDYTSTDEE 1033 (1380)
Q Consensus 996 Lrl~P~~~tLv~Gs~~ql~~--~GGP~p~~~i~fss~n~~ 1033 (1380)
+.+.|....+..|.+..|.+ .|.|. ...+.|.-.|..
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~-~p~i~W~~~~g~ 41 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAK-DKDISWFSPNGE 41 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCC-CCEEEEECCCCc
Confidence 35788999999999988877 58874 247889863443
No 43
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=20.90 E-value=1.3e+03 Score=33.97 Aligned_cols=152 Identities=18% Similarity=0.097 Sum_probs=89.3
Q ss_pred eeccceEEEEEEEEcccCCCcceeEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCEE----ecCCceeeEEE
Q 000636 855 SPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTF----DSFQYTYMDIR 930 (1380)
Q Consensus 855 tp~~~G~~~v~v~D~cl~~~~~a~a~V~V~di~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f----~~~~~~~m~l~ 930 (1380)
.|--.|...|++.-.-...-..+.+.+.|.++--++..+|.. +..|..-++.+.+.+.+|+.= ......+ .
T Consensus 982 iPdfng~~RvmavA~t~~~vG~~~~~~~v~~p~i~~~s~Prf--lapGD~~~~~l~v~N~~~~~g~~~~~~~~l~~---~ 1056 (1621)
T COG2373 982 IPDFNGRLRVMAVAWTDGAVGQAEAELIVRKPVIVEASMPRF--LAPGDRSSAGLDVFNLTGKAGDVLTVEGTLKF---N 1056 (1621)
T ss_pred cCCcCceEEEEEEEecCccccccceeEEecCCeEEecCCCce--ecCCccceeEEEEeccCCCCcceeeccceecc---c
Confidence 467788888888754411114678899999999999999998 999999999999999888862 2222111 1
Q ss_pred EEeeccEEEEEeCCCCCCCCCCccccceEEEEEeeEEEEEEEEEEE--ccCcceEEeec-----------EEEEEeCC-C
Q 000636 931 VHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSAR--QQSGHEILSQP-----------IRVEVYAP-P 996 (1380)
Q Consensus 931 l~~~~~iv~l~~~~~~s~~~~~~~~~~~~~V~g~s~G~ttL~as~~--~~~G~~i~S~~-----------~~I~VfpP-L 996 (1380)
-.-..+.++|.+.. .....|.++|.. |...+.|++. +..|.++.-.. .+.+++.| +
T Consensus 1057 ~~~~~~~~~l~~g~---------~~~l~~~l~a~~-g~g~~~~~~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~l~~~~ 1126 (1621)
T COG2373 1057 GKEAPQTLTLAEGS---------ATTLFFPLRALD-GSGKIDATLSVSGQVGDKLERHLNVRPAVPPQTQVKTVVLAPGF 1126 (1621)
T ss_pred ccccceEEEecCCC---------ceEEEEEeeccC-CCceeeEEEEecCcccceeeeeeccccCccceeeeEEEeccccc
Confidence 11012355554432 334678888886 5544444443 33443332111 13333333 2
Q ss_pred eeecCee-EEcc-CCEEEEEEEeCCcc
Q 000636 997 RIHPHDI-FLVP-GASYMLTLKGGPTV 1021 (1380)
Q Consensus 997 rl~P~~~-tLv~-Gs~~ql~~~GGP~p 1021 (1380)
++....+ .|.+ +...++.+.+.|..
T Consensus 1127 ~~~~~~l~~l~~~~~~~~l~ls~~~~~ 1153 (1621)
T COG2373 1127 TISGDLLAGLSPQAVNAQLQLSGTPAA 1153 (1621)
T ss_pred ccCchhhhhcCccccceEEEeccCccc
Confidence 2222222 2333 44577888877754
Done!