Query 000636
Match_columns 1380
No_of_seqs 223 out of 262
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 17:12:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000636.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_408-412//hhsearch_pdb/000636hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ncx_A Intimin, intimin adhere 1.0 1 1 97.0 6.4 93 298-400 3-98 (189)
2 1f00_I Intimin; immunoglobulin 1.0 1 1 65.4 11.7 163 212-400 21-186 (282)
3 1cwv_A Invasin; integrin-bindi 1.0 1 1 61.1 29.5 330 693-1064 22-384 (492)
4 2l04_A Major tail protein V; b 1.0 1 1 58.6 5.5 76 996-1076 9-89 (91)
5 3ncx_A Intimin, intimin adhere 1.0 1 1 57.4 3.4 68 989-1061 4-84 (189)
6 2l04_A Major tail protein V; b 1.0 1 1 51.5 6.3 48 346-394 39-89 (91)
7 1f00_I Intimin; immunoglobulin 1.0 1 1 44.9 11.2 138 902-1058 18-169 (282)
8 1cwv_A Invasin; integrin-bindi 1.0 1 1 44.1 26.2 231 211-498 27-286 (492)
9 1f1s_A Hyaluronate lyase; the 1.0 1 1 40.4 6.6 51 345-397 28-78 (814)
10 3tkv_A FDEC fragment B, attach 1.0 1 1 32.8 13.9 27 696-725 210-236 (414)
No 1
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=96.98 Aligned_cols=93 Identities=25% Similarity=0.432 Sum_probs=75.5
Q ss_pred EEEEEEEEEEEEECCCCC-CCCEEE--EECCCCCEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEECCEEEECCCCEEE
Q ss_conf 799999568994225777-665079--20745732589999931588997508998269515999107169852674499
Q 000636 298 QEIMVCDRIKFSLDQTNG-VSESIL--LPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKAT 374 (1380)
Q Consensus 298 qev~i~~~i~i~~~~~~~-~p~~i~--lp~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VatV~~~Gvvta~~~G~t~ 374 (1380)
.||++|.+|.|+ +..+ ....+- ||-.+..|.+|+|+|+||.+ +|+|+|+||.||+|+..|+|++++.|+++
T Consensus 3 ~~v~ff~~l~id--~~v~iig~~v~g~lP~~wlqygqFkL~a~Ggn~----~ytW~Ssdp~IAsVDssG~VT~~~kGtat 76 (189)
T 3ncx_A 3 TEVTFFDELKID--NKVDIIGNNVRGELPNIWLQYGQFKLKASGGDG----TYSWYSENTSIATVDASGKVTLNGKGSVV 76 (189)
T ss_dssp CCCCCCCCCEEC--SSEEETTTTEEESCCSSEETTCEEECCEESTTS----CEEEEESCTTTEEECTTSEEEECSSSCEE
T ss_pred CCEEEEEEEEEC--CCEEEEECCCCCCCCCHHHHCEEEEEEECCCCC----CEEEEECCCCEEEECCCCCEEEECCCCEE
T ss_conf 616876467607--844899624477788301102699998469986----26888489986788589838981368479
Q ss_pred EEEEECCCCCCEEEEEEEEECCCCEE
Q ss_conf 99993248761325999996530069
Q 000636 375 VKVVSIFDSFNYDEIVIEVSTPSSMV 400 (1380)
Q Consensus 375 V~a~d~~n~~~~~~~~V~V~~p~~i~ 400 (1380)
|+|.+..++ ++.+.|..|.+|.
T Consensus 77 ITats~dg~----tatytvt~p~~~I 98 (189)
T 3ncx_A 77 IKATSGDKQ----TVSYTIKAPSYMI 98 (189)
T ss_dssp EEEEETTSC----EEEEEECCCSCEE
T ss_pred EEEECCCCC----EEEEEEECCCEEE
T ss_conf 999918997----6899997460289
No 2
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=65.37 Aligned_cols=163 Identities=21% Similarity=0.318 Sum_probs=98.4
Q ss_pred EEEEEEEECCCCCCCEEEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEEEEEEEEEEECCCCCE
Q ss_conf 99999995389995339840377289901774217992135764013666533899982003499999997874166623
Q 000636 212 YLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTK 291 (1380)
Q Consensus 212 y~i~v~l~D~~~~~~~i~~~~~~~i~~~~~~~~~~~v~~~~~~~ng~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~~~~~ 291 (1380)
-.+++.|.| + | +++- +..+.+..+.-. +.....-...+|... .-++..++|..+|+|++.+.. +
T Consensus 21 ~t~tatV~D-~-g-npv~---g~~V~fs~~~G~-l~~~~~~Td~~G~at----vtltst~aG~~~VtA~v~~~~-~---- 84 (282)
T 1f00_I 21 ITYTVKVMK-G-D-KPVS---NQEVTFTTTLGK-LSNSTEKTDTNGYAK----VTLTSTTPGKSLVSARVSDVA-V---- 84 (282)
T ss_dssp EEEEEEEEE-T-T-EECT---TCEEEEEESSSE-ESCSEEECCTTSEEE----EEEECSSCEEECEEEEETTCC-C----
T ss_pred EEEEEEEEE-C-C-CCCC---CCEEEEECCCCC-CCCCEEEECCCCEEE----EEEECCCCEEEEEEEEECCCC-C----
T ss_conf 899999997-9-9-2167---867999858973-136525778995799----999827754799999977876-4----
Q ss_pred EEEEEEEEEEEEEEEEEEECC--CCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCEEEEEE-ECCEEEEC
Q ss_conf 567766799999568994225--777665079207457325899999315889975089982695159991-07169852
Q 000636 292 EVLKVVQEIMVCDRIKFSLDQ--TNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT-ASGVVQAK 368 (1380)
Q Consensus 292 ~~i~~~qev~i~~~i~i~~~~--~~~~p~~i~lp~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VatV~-~~Gvvta~ 368 (1380)
. ++ .+.++++.++.++-.. ..+....--||-..-..-.|+|.+.||.+ +|.|+|+++.+++|+ ..|.++..
T Consensus 85 ~-~~-a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n~----~ytWsSs~~~~~sVd~~~G~Vt~~ 158 (282)
T 1f00_I 85 D-VK-APEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLK 158 (282)
T ss_dssp C-EE-CCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEEC
T ss_pred C-CC-CCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC----EEEEECCCCCEEEECCCCCEEEEC
T ss_conf 2-34-45512550121123215630652576687633111599999469961----577742687269970787669977
Q ss_pred CCCEEEEEEEECCCCCCEEEEEEEEECCCCEE
Q ss_conf 67449999993248761325999996530069
Q 000636 369 KPGKATVKVVSIFDSFNYDEIVIEVSTPSSMV 400 (1380)
Q Consensus 369 ~~G~t~V~a~d~~n~~~~~~~~V~V~~p~~i~ 400 (1380)
..|..+|+|.+.... .+...+..|.++.
T Consensus 159 ~~GtvtITatsg~~~----t~t~ti~~~~wfi 186 (282)
T 1f00_I 159 EKGTTTISVISSDNQ----TATYTIATPNSLI 186 (282)
T ss_dssp SSSCEEEEEEETTTE----EEEEEECCCSEEE
T ss_pred CCCEEEEEEECCCCE----EEEEEEECCEEEE
T ss_conf 885599999969980----7999981772899
No 3
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=61.12 Aligned_cols=330 Identities=13% Similarity=0.107 Sum_probs=167.6
Q ss_pred ECCC-EEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEEEECEEEEEEEEEEEEEEC
Q ss_conf 0798-699999999589984862078468999708884159613556555788642799976300049999999667623
Q 000636 693 ANGQ-TIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDA 771 (1380)
Q Consensus 693 ~~~r-~~~i~v~vfD~~Gr~f~n~SSL~i~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~ 771 (1380)
.+|. ...+.+.+.|++|+.. ++..+.|...+...+.... ..-|.+|....-.-..+.|..+|+|++.|....
T Consensus 22 AdG~~~~~ltatV~D~~Gnpv---~g~~Vtf~~~~g~~~~~~t----~~Td~~G~a~~tltst~aG~~~VtAt~~g~s~s 94 (492)
T 1cwv_A 22 ANGKTAITVEFTVADFEGKPL---AGQEVVITTNNGALPNKIT----EKTDANGVARIALTNTTDGVTVVTAEVEGQRQS 94 (492)
T ss_dssp SSSSSCEEEEEEEECTTSCBC---CSCEEEEECCTTCBSCEEE----EECCTTSEEEEEEBCSSCEEEEEEEEETTEEEE
T ss_pred ECCCCEEEEEEEEECCCCCCC---CCCEEEEEECCCCCCCCCC----EEECCCCEEEEEEECCCCEEEEEEEEECCCCCE
T ss_conf 078760899999994899987---9988999978984014420----445899659999976765279999997984102
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCEEEEEECCCEE------EEEEEECCCCEEEEEECCC
Q ss_conf 6896632212222440322499999632498485028730876259999913314------9999997964299994379
Q 000636 772 KDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSC------FLEAAVNDSQVVEVIQAPE 845 (1380)
Q Consensus 772 ~l~~~~~~~~~~~~~~i~~siel~lv~~i~v~P~~v~i~n~p~~~~~l~i~gGSG------~~~~ss~~~~Vv~v~~~~~ 845 (1380)
..+.|....... .... +.+.|+...--.......+..+....| -+.|+.....+..+..+.+
T Consensus 95 ----~~v~f~a~~~~a--~~s~------l~~~~~~~~A~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~~~~Ttd~~ 162 (492)
T 1cwv_A 95 ----VDTHFVKGTIAA--DKST------LAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHND 162 (492)
T ss_dssp ----EEEEEECCCBCG--GGCE------EEEESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECCCEECSS
T ss_pred ----EEEEEEECCCCC--CCEE------EEEECCCEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf ----678986314764--3205------9983341241773048999999948999958858999977984234686689
Q ss_pred CCEEEEEEEEECCCEEEEEEEEECCCCCCCC--EEEEEEEE-EE------EEEEEEECCEEEEECCCEEEEEEEEEECCC
Q ss_conf 6046569994431208999999911699964--36999996-52------279999552478863859999999961699
Q 000636 846 GLRCLQLMLSPKGLGTALVTVYDVGLAPPRA--ASALVQVA-DV------DWIKIMSGEEISLMEGRSQSIDLMAGIDDG 916 (1380)
Q Consensus 846 g~~~~~i~vtp~~~G~~~I~v~D~cl~~~~~--a~a~V~V~-di------~~I~i~~~~~i~vevG~tv~i~v~v~d~~g 916 (1380)
|. -.+.++....|..+|++.-- +... ....|.+. +. ..|.+. ++.+...-+....+.+++.|.+|
T Consensus 163 G~--at~tlts~~aG~~tVtA~v~---g~~~~~~s~~vtf~a~~~~~~~~~~l~v~-~~~~~A~g~~~~tltatv~D~~G 236 (492)
T 1cwv_A 163 GT--YSAPLTSTTLGVATVTVKVD---GAAFSVPSVTVNFTADPIPDAGRSSFTVS-TPDILADGTMSSTLSFVPVDKNG 236 (492)
T ss_dssp SE--EEEEEECSSCEEEEEEEEET---TEEEEEEEEEEEEECCSSCCTTTCEEEES-CSEEETTSCCCEEEEEECBCTTS
T ss_pred CE--EEEEEECCCCEEEEEEEEEC---CCCCCCCCEEEEEECCCCCCCCEEEEEEC-CCCEEECCCCEEEEEEEEECCCC
T ss_conf 48--99999846763899999988---85212342579998167654301357626-66166078640899999998998
Q ss_pred CEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCEEEEECEEEEEECCC
Q ss_conf 97844882345799983002799980899999999843321599999167899999999705861687521799995898
Q 000636 917 STFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPP 996 (1380)
Q Consensus 917 ~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~g~~~~~~~~~I~g~~~G~ttLtas~~~~~G~~i~S~~~~I~VfpPL 996 (1380)
.|+.-..- +.|... ...+.+.+.. .. .+...-.+++...|..++++++. |.........|++|+..
T Consensus 237 Npv~g~~~--V~f~~~--G~~v~~s~~T---~~----~G~~t~t~t~~~aG~~tVtA~~~---g~~~~~~~~~i~f~~~~ 302 (492)
T 1cwv_A 237 HFISGMQG--LSFTQN--GVPVSISPIT---EQ----PDSYTATVVGNSVGDVTITPQVD---TLILSTLQKKISLFPVP 302 (492)
T ss_dssp CBCCSCCS--EEEEEE--ESCCEECCCE---EC----SSCEEEEEECSSCEEEEEEEEET---TEECGGGCEEEEEECCC
T ss_pred CCCCCCCE--EEEECC--CCEEEEEEEE---CC----CCEEEEEEECCCCEEEEEEEEEC---CCCCCCCCCEEEEEEEC
T ss_conf 99467744--999538--9425321373---37----85499999758613799999978---83345664207999631
Q ss_pred E-----E----------ECCEEEECCCCEEEEEEEECCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEE--EEEEEEEE
Q ss_conf 5-----6----------24714990397899999917740239999645851899991450999993676--89999998
Q 000636 997 R-----I----------HPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGN--TTLIATVF 1059 (1380)
Q Consensus 997 r-----l----------~P~~itLv~Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V~~~sG~Vta~s~G~--t~It~~~~ 1059 (1380)
. + .|. +..-|+.+|+...|+|..+..+.|+++++..+++|. +|+++=...|. .+|+++..
T Consensus 303 ~~~~i~vng~~~~~~~gfP~--tgf~~A~f~~~~~~~~~~n~~y~wsss~~~~~tvd~-~G~vt~~~~~~~~vtITat~~ 379 (492)
T 1cwv_A 303 TLTGILVNGQNFATDKGFPK--TIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVND-QGQVTITYQTYSEVAVTAKSK 379 (492)
T ss_dssp CEEEEEETTEEECTTSCCCS--EEETTCEEEEEETTCGGGGGGEEEEESSTTTEEECT-TCEEEECSCCSSCEEEEEEES
T ss_pred CCCEEEECCCCCCCCCCCCC--EEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEECC-CCEEEEEECCCCEEEEEEEEC
T ss_conf 32127853621335678874--158769999912896366772311246862588788-835999954897799999968
Q ss_pred CCCCE
Q ss_conf 06864
Q 000636 1060 GNGDV 1064 (1380)
Q Consensus 1060 ~~~g~ 1064 (1380)
+..+.
T Consensus 380 ~~~~~ 384 (492)
T 1cwv_A 380 KFPSY 384 (492)
T ss_dssp SSTTC
T ss_pred CCCCC
T ss_conf 89982
No 4
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=58.56 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=50.7
Q ss_pred CEEECCEEEECCCCEEEEEEEECCCC--CEEEEEEECCCCEEEEECCCE---EEEEEEEEEEEEEEEEECCCCEEEEEEE
Q ss_conf 85624714990397899999917740--239999645851899991450---9999936768999999806864999985
Q 000636 996 PRIHPHDIFLVPGASYMLTLKGGPTV--GVYVDYTSTDEEIATIHRSSG---QLFAISPGNTTLIATVFGNGDVVICQAF 1070 (1380)
Q Consensus 996 Lrl~P~~itLv~Gs~~ql~~~GGP~p--~~~i~fss~n~~Va~V~~~sG---~Vta~s~G~t~It~~~~~~~g~~i~~~~ 1070 (1380)
+.|.|..+.|..|...+|.+.=-|.. +..+.|+++|++||+|+. +| .|+|++.|.++|+++.. +|.. .+.
T Consensus 9 i~l~~~~~~l~vG~t~~L~atv~P~~Atnk~vtwsSsd~~vATVd~-~G~~~~Vt~v~~GtatITatt~--dG~~--~at 83 (91)
T 2l04_A 9 MTVTPASTSVVKGQSTTLTVAFQPEGVTDKSFRAVSADKTKATVSV-SGMTITVNGVAAGKVNIPVVSG--NGEF--AAV 83 (91)
T ss_dssp EEEECCCEEEETTCEEEEEEEECCSSCCCCCEEECCSCCSSCEEEE-ETTEEEEECSSSEEEECCEEET--TTTE--EEC
T ss_pred EEEECCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCCCEEEEEC-CCCEEEEEEECCCEEEEEEEEC--CCCE--EEE
T ss_conf 9980871499769879999999536467448999979999999996-6999999997075799999989--9998--999
Q ss_pred EEEEEE
Q ss_conf 799997
Q 000636 1071 SSVKVG 1076 (1380)
Q Consensus 1071 ~~V~V~ 1076 (1380)
+.|.|.
T Consensus 84 ~~VtV~ 89 (91)
T 2l04_A 84 AEITVT 89 (91)
T ss_dssp CEEEEE
T ss_pred EEEEEE
T ss_conf 999997
No 5
>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A
Probab=1.00 E-value=1 Score=57.39 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=57.0
Q ss_pred EEEEECCCEEECCEEEECC-------------CCEEEEEEEECCCCCEEEEEEECCCCEEEEECCCEEEEEEEEEEEEEE
Q ss_conf 9999589856247149903-------------978999999177402399996458518999914509999936768999
Q 000636 989 RVEVYAPPRIHPHDIFLVP-------------GASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLI 1055 (1380)
Q Consensus 989 ~I~VfpPLrl~P~~itLv~-------------Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V~~~sG~Vta~s~G~t~It 1055 (1380)
.++-|.+|.++- ++.++= .+.|+|...|| +..+.|+++|+.||+||. +|+|++...|.++|+
T Consensus 4 ~v~ff~~l~id~-~v~iig~~v~g~lP~~wlqygqFkL~a~Gg---n~~ytW~Ssdp~IAsVDs-sG~VT~~~kGtatIT 78 (189)
T 3ncx_A 4 EVTFFDELKIDN-KVDIIGNNVRGELPNIWLQYGQFKLKASGG---DGTYSWYSENTSIATVDA-SGKVTLNGKGSVVIK 78 (189)
T ss_dssp CCCCCCCCEECS-SEEETTTTEEESCCSSEETTCEEECCEEST---TSCEEEEESCTTTEEECT-TSEEEECSSSCEEEE
T ss_pred CEEEEEEEEECC-CEEEEECCCCCCCCCHHHHCEEEEEEECCC---CCCEEEEECCCCEEEECC-CCCEEEECCCCEEEE
T ss_conf 168764676078-448996244777883011026999984699---862688848998678858-983898136847999
Q ss_pred EEEECC
Q ss_conf 999806
Q 000636 1056 ATVFGN 1061 (1380)
Q Consensus 1056 ~~~~~~ 1061 (1380)
++..++
T Consensus 79 ats~dg 84 (189)
T 3ncx_A 79 ATSGDK 84 (189)
T ss_dssp EEETTS
T ss_pred EECCCC
T ss_conf 991899
No 6
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=1.00 E-value=1 Score=51.54 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=29.6
Q ss_pred EEEEEECCCEEEEEEECC---EEEECCCCEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf 089982695159991071---6985267449999993248761325999996
Q 000636 346 DYKWFSSDMATVSITASG---VVQAKKPGKATVKVVSIFDSFNYDEIVIEVS 394 (1380)
Q Consensus 346 ~y~WsSsn~~VatV~~~G---vvta~~~G~t~V~a~d~~n~~~~~~~~V~V~ 394 (1380)
.+.|+|+|++||+|+.+| .+++...|.++|+|...+. ...++|.|.|.
T Consensus 39 ~vtwsSsd~~vATVd~~G~~~~Vt~v~~GtatITatt~dG-~~~at~~VtV~ 89 (91)
T 2l04_A 39 SFRAVSADKTKATVSVSGMTITVNGVAAGKVNIPVVSGNG-EFAAVAEITVT 89 (91)
T ss_dssp CEEECCSCCSSCEEEEETTEEEEECSSSEEEECCEEETTT-TEEECCEEEEE
T ss_pred EEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEEEECCC-CEEEEEEEEEE
T ss_conf 8999979999999996699999999707579999998999-98999999997
No 7
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=1.00 E-value=1 Score=44.91 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=91.9
Q ss_pred CCEEEEEEEEEECCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCC
Q ss_conf 85999999996169997844882345799983002799980899999999843321599999167899999999705861
Q 000636 902 GRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGH 981 (1380)
Q Consensus 902 G~tv~i~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~g~~~~~~~~~I~g~~~G~ttLtas~~~~~G~ 981 (1380)
.....+.+++.| .|.|..- +- +.| .+++.. +........+ .+.....++....|..+++|++.+ .+.
T Consensus 18 ~d~~t~tatV~D-~gnpv~g-~~--V~f--s~~~G~--l~~~~~~Td~----~G~atvtltst~aG~~~VtA~v~~-~~~ 84 (282)
T 1f00_I 18 QDAITYTVKVMK-GDKPVSN-QE--VTF--TTTLGK--LSNSTEKTDT----NGYAKVTLTSTTPGKSLVSARVSD-VAV 84 (282)
T ss_dssp CCCEEEEEEEEE-TTEECTT-CE--EEE--EESSSE--ESCSEEECCT----TSEEEEEEECSSCEEECEEEEETT-CCC
T ss_pred CCEEEEEEEEEE-CCCCCCC-CE--EEE--ECCCCC--CCCCEEEECC----CCEEEEEEECCCCEEEEEEEEECC-CCC
T ss_conf 221899999997-9921678-67--999--858973--1365257789----957999998277547999999778-764
Q ss_pred EEEEECEEEEEECCCEEECCEEEE-------------CCCCEEEEEEEECCCCCEEEEEEECCCCEEEEE-CCCEEEEEE
Q ss_conf 687521799995898562471499-------------039789999991774023999964585189999-145099999
Q 000636 982 EILSQPIRVEVYAPPRIHPHDIFL-------------VPGASYMLTLKGGPTVGVYVDYTSTDEEIATIH-RSSGQLFAI 1047 (1380)
Q Consensus 982 ~i~S~~~~I~VfpPLrl~P~~itL-------------v~Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V~-~~sG~Vta~ 1047 (1380)
.. ....|+-++++++.--.+.+ ..++.+++...||. ..+.|+++++.+++|| . +|.|+-.
T Consensus 85 ~~--~a~~VtFva~~~i~~~~v~vng~~adg~~p~t~~~~a~~~l~~~~~n---~~ytWsSs~~~~~sVd~~-~G~Vt~~ 158 (282)
T 1f00_I 85 DV--KAPEVEFFTTLTIDDGNIEIVGTGVKGKLPTVWLQYGQVNLKASGGN---GKYTWRSANPAIASVDAS-SGQVTLK 158 (282)
T ss_dssp CE--ECCCEEEECCCEECTTCEEETTTCCEESCCSEEETTCEEECCEESTT---SCEEEEESCTTTEEECTT-TCEEEEC
T ss_pred CC--CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCC---CEEEEECCCCCEEEECCC-CCEEEEC
T ss_conf 23--44551255012112321563065257668763311159999946996---157774268726997078-7669977
Q ss_pred EEEEEEEEEEE
Q ss_conf 36768999999
Q 000636 1048 SPGNTTLIATV 1058 (1380)
Q Consensus 1048 s~G~t~It~~~ 1058 (1380)
..|..+|+++.
T Consensus 159 ~~GtvtITats 169 (282)
T 1f00_I 159 EKGTTTISVIS 169 (282)
T ss_dssp SSSCEEEEEEE
T ss_pred CCCEEEEEEEC
T ss_conf 88559999996
No 8
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=1.00 E-value=1 Score=44.06 Aligned_cols=231 Identities=13% Similarity=0.151 Sum_probs=123.8
Q ss_pred EEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCE---EEEEECCCCCCEEEEEEECEEEEEEEEEEEEEEEEEEEEECC
Q ss_conf 99999999538999533984037728990177421---799213576401366653389998200349999999787416
Q 000636 211 QYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSEC---WRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGL 287 (1380)
Q Consensus 211 ~y~i~v~l~D~~~~~~~i~~~~~~~i~~~~~~~~~---~~v~~~~~~~ng~~~~~n~~~v~a~~~G~~tI~Asl~~~~~~ 287 (1380)
...+++.|.|++ | +++- +..+.+..+.-.. .... ...+|.+. .-++..++|..+|+|++.+.
T Consensus 27 ~~~ltatV~D~~-G-npv~---g~~Vtf~~~~g~~~~~~t~~---Td~~G~a~----~tltst~aG~~~VtAt~~g~--- 91 (492)
T 1cwv_A 27 AITVEFTVADFE-G-KPLA---GQEVVITTNNGALPNKITEK---TDANGVAR----IALTNTTDGVTVVTAEVEGQ--- 91 (492)
T ss_dssp CEEEEEEEECTT-S-CBCC---SCEEEEECCTTCBSCEEEEE---CCTTSEEE----EEEBCSSCEEEEEEEEETTE---
T ss_pred EEEEEEEEECCC-C-CCCC---CCEEEEEECCCCCCCCCCEE---ECCCCEEE----EEEECCCCEEEEEEEEECCC---
T ss_conf 089999999489-9-9879---98899997898401442044---58996599----99976765279999997984---
Q ss_pred CCCEEEEEEEEEEEEEE--------EEEEEECCCCCCCCEEEEECCCCCEE-EEEEEEECCCCC--CCCEEEEEECCCEE
Q ss_conf 66235677667999995--------68994225777665079207457325-899999315889--97508998269515
Q 000636 288 HDTKEVLKVVQEIMVCD--------RIKFSLDQTNGVSESILLPWAPGIYQ-EVELMATGGCAK--TSSDYKWFSSDMAT 356 (1380)
Q Consensus 288 ~~~~~~i~~~qev~i~~--------~i~i~~~~~~~~p~~i~lp~~~~~~q-~~~L~a~GGsg~--~~~~y~WsSsn~~V 356 (1380)
.....+.+.. .+.+ .|..+.- .+... .+++++.-..|. ......|+..+..+
T Consensus 92 -------s~s~~v~f~a~~~~a~~s~l~~-------~~~~~~A---~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g~~ 154 (492)
T 1cwv_A 92 -------RQSVDTHFVKGTIAADKSTLAA-------VPTSIIA---DGLMASTITLELKDTYGDPQAGANVAFDTTLGNM 154 (492)
T ss_dssp -------EEEEEEEEECCCBCGGGCEEEE-------ESSEEET---TSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEE
T ss_pred -------CCEEEEEEEECCCCCCCEEEEE-------ECCCEEC---CCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCE
T ss_conf -------1026789863147643205998-------3341241---7730489999999489999588589999779842
Q ss_pred EEE--EECCEEEEC----CCCEEEEEEEECCCCCCEEEEEEEEEC-C------CCEEEEECCCEEEEE--CCEEEEEEEE
Q ss_conf 999--107169852----674499999932487613259999965-3------006991165179970--9689999999
Q 000636 357 VSI--TASGVVQAK----KPGKATVKVVSIFDSFNYDEIVIEVST-P------SSMVMLRNFPVETVV--GSHLQAAVTM 421 (1380)
Q Consensus 357 atV--~~~Gvvta~----~~G~t~V~a~d~~n~~~~~~~~V~V~~-p------~~i~i~p~~~~E~~v--g~~l~l~v~~ 421 (1380)
..+ +..|+.+.. ..|..+|+|.......-.....|.+.. + ..+.+.+ -++.. .+...+.+++
T Consensus 155 ~~~Ttd~~G~at~tlts~~aG~~tVtA~v~g~~~~~~s~~vtf~a~~~~~~~~~~l~v~~---~~~~A~g~~~~tltatv 231 (492)
T 1cwv_A 155 GVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVST---PDILADGTMSSTLSFVP 231 (492)
T ss_dssp CCCEECSSSEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEEEECCSSCCTTTCEEEESC---SEEETTSCCCEEEEEEC
T ss_pred EEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECC---CCEEECCCCEEEEEEEE
T ss_conf 346866894899999846763899999988852123425799981676543013576266---61660786408999999
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEE
Q ss_conf 82398210257885018999727861899136878762133687101246788886059999831144999999941
Q 000636 422 KTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSK 498 (1380)
Q Consensus 422 ~~~~G~~Fs~C~~~~~~v~ws~~~~vf~~~~~~~~~~~~~~~~~~e~~~~~~g~~C~~~~i~a~~~G~t~l~vs~~~ 498 (1380)
.|.+|+++..... +.|..+...+...+ +.+ ..| -....+.+...|..++++++..
T Consensus 232 ~D~~GNpv~g~~~----V~f~~~G~~v~~s~------~T~----------~~G--~~t~t~t~~~aG~~tVtA~~~g 286 (492)
T 1cwv_A 232 VDKNGHFISGMQG----LSFTQNGVPVSISP------ITE----------QPD--SYTATVVGNSVGDVTITPQVDT 286 (492)
T ss_dssp BCTTSCBCCSCCS----EEEEEEESCCEECC------CEE----------CSS--CEEEEEECSSCEEEEEEEEETT
T ss_pred ECCCCCCCCCCCE----EEEECCCCEEEEEE------EEC----------CCC--EEEEEEECCCCEEEEEEEEECC
T ss_conf 9899899467744----99953894253213------733----------785--4999997586137999999788
No 9
>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} SCOP: a.102.3.2 b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Probab=1.00 E-value=1 Score=40.43 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=42.9
Q ss_pred CEEEEEECCCEEEEEEECCEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCC
Q ss_conf 50899826951599910716985267449999993248761325999996530
Q 000636 345 SDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPS 397 (1380)
Q Consensus 345 ~~y~WsSsn~~VatV~~~Gvvta~~~G~t~V~a~d~~n~~~~~~~~V~V~~p~ 397 (1380)
++|.|+++|++||+|+ .|++++...|.++|++.|..++. .+++.|.|..+.
T Consensus 28 ~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (814)
T 1f1s_A 28 ADYQYTLTNPSLGKIV-GGILYPNATGSTTVKISDKSGKI-IKEVPLSVTAST 78 (814)
T ss_dssp TTSEEEESSGGGEEEE-TTEEEECSCEEEEEEEECTTCCE-EEEEEEEEECCC
T ss_pred CCEEEEECCCCEEEEE-CCEEEEECCCEEEEEEECCCCCE-EEEEEEECCCCC
T ss_conf 8637996488358972-76788604864899998689987-899874216778
No 10
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=1.00 E-value=1 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=11.0
Q ss_pred CEEEEEEEEECCCCCEEEECCCCEEEEEEC
Q ss_conf 869999999958998486207846899970
Q 000636 696 QTIRIAAVGISSSGEAFANSSSLCLGWELS 725 (1380)
Q Consensus 696 r~~~i~v~vfD~~Gr~f~n~SSL~i~W~~s 725 (1380)
....|.+.+.|.+|+++ .+..+.|...
T Consensus 210 ~~~t~t~~v~Da~GNpv---~g~~V~f~~~ 236 (414)
T 3tkv_A 210 ESTTVTLVAKDAHGNAI---SGLSLSASLT 236 (414)
T ss_dssp CEEEEEEECBBTTCCBC---CSCCEEEEEE
T ss_pred CEEEEEEEEECCCCCCC---CCCEEEEEEC
T ss_conf 87899999992999996---8977999992
Done!