BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000637
(1378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1
OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
Length = 1041
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 27/236 (11%)
Query: 69 EGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNG 128
E ++G + +EL++LV FG+I+ +E ++ +++LK + P V V+ R +K
Sbjct: 529 EVTTGVTKIGDYELHDLVLLDNLSFGVIIRLE-NEAFQVLKGVPDRPEVALVKLREIKCK 587
Query: 129 PFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCS 188
+ K D+ VI++ D RV EGPSK +QG VK IY+G+LFIYD + E+ G+ C+
Sbjct: 588 -LEKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICA 646
Query: 189 KSQHCEKTKVEACEG-------KGGGSGASGFEEFPSSPKSPLSPKRSWQ--------AR 233
K C G + GG S + F + P SP R + +
Sbjct: 647 KCTSC------IVVGGSRSGANRNGGDSLSRYGNFKAPAPVPSSPGRFQRGRGGGYNNSG 700
Query: 234 EQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTV 289
++ + D + G T++IR+GP KGY V+ V+ + V V+L + KI+TV
Sbjct: 701 GRHGGGRGRGDDSLL--GTTVKIRLGPFKGYRGPVVEVKGNSVRVEL--EMKIVTV 752
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKF-QPSESNESADLEWLSQLYGERKK 55
M+ KDG+ YK+VS+ S++ V P+ +EL KF +PSE+ E D LS L+ RKK
Sbjct: 369 MLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGE-GDFGGLSTLFANRKK 423
>sp|O13936|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1
Length = 990
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 66 DKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTL 125
D GE SS ++ +++EL++LV I +++D YK++ + G V + T+
Sbjct: 566 DLGEASSAQAVNSAYELHDLVQLDVNTVACIFSVDRDT-YKVIDQNG-GVRTVLASQITM 623
Query: 126 KNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGY 185
++ + + A D++ I + D +V E + +QG + IYR +F+++ + EN G
Sbjct: 624 RHS--NRRGVATDRNGAEIRIGD--KVKEVGGEGKQGTILHIYRAFVFLHNRDIAENNGV 679
Query: 186 FCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGD-R 244
F ++S++ V KG A + P+ P P + KR R
Sbjct: 680 FSARSRN-----VATIAAKGARISADLTKMNPALSNGPALPPVA--------NLKRTIGR 726
Query: 245 DGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHL 294
D A+G T+RIR GP+KG L + ++ V+L + K++T+ E+L
Sbjct: 727 DK--AIGATVRIRRGPMKGLLGVIKDTTDANARVELHTGNKMVTIPKENL 774
Score = 37.4 bits (85), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 3 LKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLS 47
+DG+L K + I SL GV P+ +E+ KF P +NE DL L+
Sbjct: 420 FEDGFLVKDIRISSLITEGVNPTLDEVSKFNP--NNEDLDLSSLA 462
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2
OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2
Length = 989
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 55/271 (20%)
Query: 41 ADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGME 100
D L L K+ E + G + +EL++LV FG+I+ ++
Sbjct: 488 VDQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLD 547
Query: 101 KDDHYKILKEGSEGPAVVTVERRTLKNGPFDM--KFTALDQSMKVISLNDTARVSEGPSK 158
+ +ILK + V V+ +K + + K D+ V+++ D RV EGPSK
Sbjct: 548 SEA-IQILKGVPDSSEVSIVKASEIK---YKIWKKINVQDRYKNVVAVKDVVRVIEGPSK 603
Query: 159 DRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPS 218
+QG V +IY+G+LFI+D + E+ G+ C T+ +C GG F +
Sbjct: 604 GKQGPVVQIYKGVLFIHDRHNLEHTGFIC--------TRCSSCVLAGGN--------FKT 647
Query: 219 SPKSPLSPKRSWQAREQNTEFKRGDR-------------------DGMFAVGQTLRIRVG 259
P SP+R F+R D D + VG ++IR+G
Sbjct: 648 PALVPPSPRR----------FQRADMGYNPGAGGRHQGGRGRRGDDHL--VGTYVKIRLG 695
Query: 260 PLKGYLCRVLAVRYSDVTVKLDSQQKILTVK 290
P KGY R++ V+ D V+++ + KI+TV+
Sbjct: 696 PFKGYSGRLVEVK--DKLVRVELEAKIVTVE 724
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 1 MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWL--SQLYGERKK 55
M+ KDG+LYKKVS S++ V P+ +EL +F+ NE+ +++++ S L+ RKK
Sbjct: 356 MLFKDGFLYKKVSTKSIAAQNVTPTFDELERFK--RPNENGEIDFVDESTLFANRKK 410
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H
PE=2 SV=1
Length = 1079
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 31/228 (13%)
Query: 84 ELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKF-TALDQSMK 142
ELV + G+IV +E++ +++L + VVTV + + D +F ALD
Sbjct: 535 ELVQLDPQTVGVIVRLERET-FQVLNMYGK---VVTVRHQAVTRKK-DNRFAVALDSEQN 589
Query: 143 VISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACE 202
I + D +V +GP R+G ++ ++RG F++ + ENGG F K++H
Sbjct: 590 NIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHL--------- 640
Query: 203 GKGGGSGASGFEEF------PSSPK--SPLSP-----KRSWQAREQNTEFKRGDRDGMFA 249
GGS F P SP+ SP+ P + + + R D D
Sbjct: 641 VLAGGSKPRDVTNFTVGSFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDND---L 697
Query: 250 VGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEV 297
+GQT+RI GP KGY+ V S V+L S + ++V + L V
Sbjct: 698 IGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 745
>sp|P82003|PTSP_BOMMO Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2
Length = 274
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 92/177 (51%), Gaps = 48/177 (27%)
Query: 589 SSWAK---QDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSL 645
S WAK QD S+WGK+ QD S+WGK+ G QD S+WGK+
Sbjct: 50 SGWAKRAWQDMSSAWGKR------AWQDLNSAWGKR------GWQDLNSAWGKR------ 91
Query: 646 AKQDGGSSWGK---QDRGSSWGKQDEGSSWSKR---DGGSSWGKQDGGSSLAKQDGGSSW 699
A QD S+WGK QD S+WGK+D+ + K+ D S WGK+ A QD S+W
Sbjct: 92 AWQDLNSAWGKRGWQDLNSAWGKRDDDEAMEKKSWQDLNSVWGKR------AWQDLNSAW 145
Query: 700 GKQDGGSSLGKQDGGSSWSKQ---DGGSSWGK---QDGGSSWGK---QDGGSSWGKQ 747
GK+ QD S+W K+ D S WGK QD S+WGK QD S+WGK+
Sbjct: 146 GKR------AWQDLNSAWGKRGWNDISSVWGKRAWQDLNSAWGKRAWQDMSSAWGKR 196
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1
SV=1
Length = 1082
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 32/229 (13%)
Query: 84 ELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKF-TALDQSMK 142
ELV + G+IV +E++ +++L + VVTV + + D +F ALD
Sbjct: 536 ELVQLDPRTVGVIVRLERET-FQVLNMHGK---VVTVRHQAVTQKK-DNRFAVALDSDQN 590
Query: 143 VISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACE 202
I + D +V +GP R+G ++ +YR F++ + ENGG F K++H
Sbjct: 591 NIHVKDIVKVIDGPHSGREGEIRHLYRSFAFLHCKKLVENGGMFVCKARHL--------- 641
Query: 203 GKGGGSGASGFEEF------PSSPK--SPLSPKRSWQ------AREQNTEFKRGDRDGMF 248
GGS P SP+ SP+ P Q + R D +
Sbjct: 642 VLAGGSKPRDVTNLTVGGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNE--- 698
Query: 249 AVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEV 297
+GQT+RI GP KGY+ V S V+L S + ++V + L V
Sbjct: 699 LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 747
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1
SV=1
Length = 1084
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 35/235 (14%)
Query: 84 ELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKF-TALDQSMK 142
ELV + G+IV +E++ +++L + V+TV + + N D +F ALD
Sbjct: 537 ELVQLDPQTVGVIVRLERET-FQVLNMHGK---VLTVRHQAV-NRRKDNRFAVALDSEQN 591
Query: 143 VISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACE 202
I + D +V +GP R+G ++ I+RG F++ + ENGG F K++H
Sbjct: 592 NIHVKDIVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHL--------- 642
Query: 203 GKGGGSGASGFEEFPSSPKSPLSPKRSWQAR-----------------EQNTEFKRGDRD 245
GGS F +P+SP+ S R D D
Sbjct: 643 VLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPGGGGQPQRGGGGGGGGGMGRGRGRRDND 702
Query: 246 GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGK 300
+GQT+RI GP KGY+ V S V+L S + ++V + L V GK
Sbjct: 703 ---LIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGGK 754
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2
SV=1
Length = 1083
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 30/230 (13%)
Query: 84 ELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKF-TALDQSMK 142
ELV + G+IV +E++ +++L + VVTV + + D +F ALD
Sbjct: 534 ELVQLDPQTVGVIVRLERET-FQVLNMYGK---VVTVRHQAVTRKK-DNRFAVALDSEQN 588
Query: 143 VISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACE 202
I + D +V +GP R+G ++ ++R F++ + ENGG F K++H
Sbjct: 589 NIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHL--------- 639
Query: 203 GKGGGSGASGFEEF------PSSPK--SPLSPKRSWQAREQNTEFKRGDRDGMF------ 248
GGS F P SP+ SP+ P Q +
Sbjct: 640 VLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDN 699
Query: 249 -AVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEV 297
+GQT+RI GP KGY+ V S V+L S + ++V + L V
Sbjct: 700 ELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 749
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1
SV=1
Length = 1087
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 30/230 (13%)
Query: 84 ELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKF-TALDQSMK 142
ELV + G+IV +E++ +++L + VVTV + + D +F ALD
Sbjct: 538 ELVQLDPQTVGVIVRLERET-FQVLNMYGK---VVTVRHQAVTRKK-DNRFAVALDSEQN 592
Query: 143 VISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACE 202
I + D +V +GP R+G ++ ++R F++ + ENGG F K++H
Sbjct: 593 NIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHL--------- 643
Query: 203 GKGGGSGASGFEEF------PSSPK--SPLSPKRSWQAREQNTEFKRGDRDGMF------ 248
GGS F P SP+ SP+ P Q +
Sbjct: 644 VLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDN 703
Query: 249 -AVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEV 297
+GQT+RI GP KGY+ V S V+L S + ++V + L V
Sbjct: 704 ELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 753
>sp|Q6CWW9|SPT5_KLULA Transcription elongation factor SPT5 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT5 PE=3 SV=1
Length = 1036
Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 29/263 (11%)
Query: 41 ADLEWLSQ-----LYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGL 95
A L L Q ++ ++ TI K S+ +S E + L+++V K+
Sbjct: 560 AGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDSTPTSSE--YALHDIVELSAKNVAC 617
Query: 96 IVGMEKDDHYKILKEGSEGPAVVTVERRTL--KNGPFDMKFTALDQSMKVISLNDTARVS 153
++ D +KI+ + + V TV + ++ K K A+D + + I + D R
Sbjct: 618 VI-QAGHDIFKIIDDSGK---VATVTKGSILAKINVARAKVAAVDGNGREIKIGDVVR-- 671
Query: 154 EGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGK-GGGSGASG 212
E R+G V + +FI + TEN G F VEA K S A
Sbjct: 672 EKIGSRREGQVLYVQNQHIFIRSKTITENAGVFV-----VNPMNVEAVASKENLMSSALD 726
Query: 213 FEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVR 272
+ + S + P ++ Q + + RD A+ +T+RIR KG L V V
Sbjct: 727 LSKINPNIASKMGPPQTTQ------QTRLVGRD--VALNKTVRIRSAGYKGQLGIVKDVN 778
Query: 273 YSDVTVKLDSQQKILTVKGEHLA 295
T++L S+ K +T+ L
Sbjct: 779 GDKATIELHSKNKHITIDKRKLT 801
>sp|Q86B20|EIF3A_DICDI Eukaryotic translation initiation factor 3 subunit A
OS=Dictyostelium discoideum GN=eif3A PE=1 SV=1
Length = 1030
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 656 KQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGS 715
K D G WG++++ + +GG WG+++ + +GG WGK++ + +GG
Sbjct: 809 KADEGDRWGRREDAPPPRRDEGGDRWGRREDAPPPRRDEGGDRWGKREDAPPPRRDEGG- 867
Query: 716 SWSKQDGGSSWGKQDGGSSWGKQDGGSSWG 745
WG++D + +GG WG
Sbjct: 868 ----------WGRRDDAPPPRRDEGGDRWG 887
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.128 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,876,954
Number of Sequences: 539616
Number of extensions: 38295862
Number of successful extensions: 281540
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 1584
Number of HSP's that attempted gapping in prelim test: 84756
Number of HSP's gapped (non-prelim): 61586
length of query: 1378
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1248
effective length of database: 121,419,379
effective search space: 151531384992
effective search space used: 151531384992
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 68 (30.8 bits)