Query 000640
Match_columns 1378
No_of_seqs 435 out of 589
Neff 4.3
Searched_HMMs 46136
Date Mon Apr 1 21:08:52 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473 Nucleosome remodeling 100.0 3E-35 6.4E-40 356.4 23.4 276 764-1076 409-701 (1414)
2 PF02791 DDT: DDT domain; Int 99.5 4.4E-14 9.6E-19 125.7 6.4 59 192-250 2-61 (61)
3 smart00571 DDT domain in diffe 99.4 1.8E-13 3.8E-18 122.8 6.3 58 192-249 2-62 (63)
4 KOG1245 Chromatin remodeling c 98.9 8.9E-09 1.9E-13 135.5 15.7 46 583-628 650-695 (1404)
5 PF15613 WHIM2: WSTF, HB1, Itc 98.9 1.1E-09 2.4E-14 89.7 3.8 37 766-802 1-37 (38)
6 PF15614 WHIM3: WSTF, HB1, Itc 98.7 1.3E-08 2.7E-13 86.5 4.0 36 805-840 1-37 (46)
7 PF11600 CAF-1_p150: Chromatin 98.5 5.4E-06 1.2E-10 91.0 19.6 63 97-178 154-216 (216)
8 PF05066 HARE-HTH: HB1, ASXL, 98.4 1.9E-07 4.1E-12 85.5 3.4 67 373-441 1-71 (72)
9 PF15612 WHIM1: WSTF, HB1, Itc 98.2 9.6E-07 2.1E-11 75.7 4.1 48 584-631 3-50 (50)
10 KOG1029 Endocytic adaptor prot 98.2 3.6E-05 7.8E-10 94.6 17.0 25 576-600 719-744 (1118)
11 KOG4364 Chromatin assembly fac 98.1 0.00011 2.3E-09 89.8 19.7 11 375-385 479-489 (811)
12 PTZ00121 MAEBL; Provisional 98.1 8.9E-05 1.9E-09 95.7 19.4 12 804-815 1818-1829(2084)
13 PTZ00266 NIMA-related protein 98.1 2.5E-05 5.5E-10 101.2 15.1 14 136-149 526-539 (1021)
14 PTZ00121 MAEBL; Provisional 98.1 0.00014 3.1E-09 94.0 19.8 27 824-850 1793-1819(2084)
15 KOG1029 Endocytic adaptor prot 98.0 0.00015 3.4E-09 89.3 18.5 21 37-57 352-372 (1118)
16 PTZ00266 NIMA-related protein 98.0 7.4E-05 1.6E-09 97.1 15.5 8 386-393 721-728 (1021)
17 PF11600 CAF-1_p150: Chromatin 97.9 0.00035 7.6E-09 76.9 16.4 18 89-106 132-149 (216)
18 KOG2891 Surface glycoprotein [ 97.0 0.03 6.6E-07 63.4 17.2 22 90-111 389-410 (445)
19 KOG2891 Surface glycoprotein [ 96.9 0.068 1.5E-06 60.7 18.9 23 93-115 385-407 (445)
20 KOG0163 Myosin class VI heavy 96.7 0.047 1E-06 68.3 16.8 25 210-234 1064-1089(1259)
21 KOG1144 Translation initiation 96.6 0.03 6.4E-07 70.4 14.6 19 376-394 549-567 (1064)
22 PF15236 CCDC66: Coiled-coil d 96.5 0.12 2.7E-06 55.0 16.5 50 46-95 68-117 (157)
23 PF05262 Borrelia_P83: Borreli 96.4 0.075 1.6E-06 65.3 16.7 8 213-220 425-432 (489)
24 KOG0163 Myosin class VI heavy 96.0 0.088 1.9E-06 66.0 14.2 25 117-141 1011-1035(1259)
25 PRK09510 tolA cell envelope in 96.0 0.38 8.2E-06 57.9 18.9 9 299-307 305-313 (387)
26 KOG1144 Translation initiation 95.8 0.065 1.4E-06 67.5 12.1 10 1115-1124 911-920 (1064)
27 PF15236 CCDC66: Coiled-coil d 95.4 0.76 1.6E-05 49.2 16.7 30 49-78 82-111 (157)
28 PF05672 MAP7: MAP7 (E-MAP-115 95.4 1.4 2.9E-05 47.9 18.6 7 137-143 151-157 (171)
29 PF05672 MAP7: MAP7 (E-MAP-115 95.1 1.7 3.7E-05 47.2 18.3 7 130-136 137-143 (171)
30 KOG2412 Nuclear-export-signal 94.7 0.45 9.8E-06 58.6 14.2 15 298-312 521-535 (591)
31 KOG3054 Uncharacterized conser 94.6 0.22 4.9E-06 56.0 10.5 10 217-226 216-225 (299)
32 KOG3054 Uncharacterized conser 94.6 0.21 4.6E-06 56.2 10.3 9 220-228 204-212 (299)
33 KOG2412 Nuclear-export-signal 93.4 0.63 1.4E-05 57.4 11.9 22 197-218 357-380 (591)
34 PF13904 DUF4207: Domain of un 92.9 9.9 0.00021 43.9 20.1 9 148-156 239-247 (264)
35 COG3064 TolA Membrane protein 92.1 4.1 8.9E-05 47.8 15.5 13 300-312 311-323 (387)
36 PF07888 CALCOCO1: Calcium bin 91.7 10 0.00022 47.8 19.5 33 158-190 500-538 (546)
37 PRK12704 phosphodiesterase; Pr 91.0 12 0.00027 47.0 19.4 16 212-227 278-293 (520)
38 PRK00106 hypothetical protein; 90.8 17 0.00036 46.1 20.3 12 348-359 398-409 (535)
39 PRK12704 phosphodiesterase; Pr 90.5 25 0.00054 44.4 21.4 6 353-358 388-393 (520)
40 KOG0742 AAA+-type ATPase [Post 90.3 29 0.00063 42.8 20.5 19 614-632 599-617 (630)
41 KOG2002 TPR-containing nuclear 88.0 3.2 6.8E-05 54.6 11.3 17 46-62 852-868 (1018)
42 PF02029 Caldesmon: Caldesmon; 87.6 2.6 5.6E-05 52.4 10.0 30 185-214 411-440 (492)
43 PRK00106 hypothetical protein; 87.3 45 0.00097 42.4 20.4 6 354-359 381-386 (535)
44 PF00769 ERM: Ezrin/radixin/mo 84.6 68 0.0015 36.9 18.6 9 241-249 191-199 (246)
45 KOG2689 Predicted ubiquitin re 84.4 23 0.00051 41.3 14.6 17 109-125 161-177 (290)
46 KOG2689 Predicted ubiquitin re 81.6 16 0.00034 42.6 11.9 15 129-143 165-179 (290)
47 PF09756 DDRGK: DDRGK domain; 79.9 0.56 1.2E-05 51.5 0.0 40 203-247 100-140 (188)
48 COG4942 Membrane-bound metallo 77.9 69 0.0015 39.7 16.3 8 292-299 410-417 (420)
49 PF06524 NOA36: NOA36 protein; 76.7 2.4 5.2E-05 48.5 3.7 7 949-955 38-44 (314)
50 PF10147 CR6_interact: Growth 76.4 78 0.0017 36.1 15.1 16 91-106 189-204 (217)
51 KOG0579 Ste20-like serine/thre 72.4 2.9E+02 0.0063 36.4 19.8 16 44-59 842-857 (1187)
52 PF02029 Caldesmon: Caldesmon; 71.6 19 0.0004 45.2 9.8 11 217-227 389-399 (492)
53 KOG3654 Uncharacterized CH dom 71.1 22 0.00049 44.1 10.0 27 284-316 625-651 (708)
54 PRK12705 hypothetical protein; 69.4 3E+02 0.0066 35.1 19.5 12 348-359 371-382 (508)
55 PRK13428 F0F1 ATP synthase sub 69.0 78 0.0017 39.3 14.3 24 162-185 148-171 (445)
56 KOG0579 Ste20-like serine/thre 68.6 2.7E+02 0.0058 36.7 18.4 68 6-73 784-860 (1187)
57 PLN03086 PRLI-interacting fact 67.8 27 0.00059 44.5 10.2 10 981-990 529-538 (567)
58 PF09726 Macoilin: Transmembra 66.7 4E+02 0.0088 35.3 20.4 8 131-138 642-649 (697)
59 PF15346 ARGLU: Arginine and g 66.7 2E+02 0.0043 31.3 17.8 13 29-41 34-46 (149)
60 KOG3654 Uncharacterized CH dom 66.6 30 0.00066 43.0 9.8 15 232-246 509-523 (708)
61 PF12072 DUF3552: Domain of un 64.8 2.3E+02 0.0051 31.5 19.4 12 44-55 68-79 (201)
62 KOG1832 HIV-1 Vpr-binding prot 64.7 3.6 7.8E-05 53.5 1.9 39 578-616 654-692 (1516)
63 TIGR01069 mutS2 MutS2 family p 64.5 1.8E+02 0.0039 38.8 17.0 17 206-222 691-707 (771)
64 PF06637 PV-1: PV-1 protein (P 64.4 86 0.0019 38.3 12.7 58 83-140 316-375 (442)
65 PTZ00491 major vault protein; 63.9 2.4E+02 0.0051 38.0 17.4 20 26-45 682-701 (850)
66 KOG1832 HIV-1 Vpr-binding prot 63.6 3.9 8.5E-05 53.2 1.9 29 580-609 737-765 (1516)
67 PLN03086 PRLI-interacting fact 62.4 42 0.0009 42.9 10.4 21 965-989 543-563 (567)
68 TIGR01069 mutS2 MutS2 family p 62.2 2E+02 0.0043 38.4 16.8 11 293-303 697-707 (771)
69 PF05918 API5: Apoptosis inhib 61.9 2.6 5.6E-05 53.1 0.0 14 808-821 236-249 (556)
70 COG4942 Membrane-bound metallo 61.4 4.1E+02 0.009 33.2 19.2 10 204-213 308-317 (420)
71 PF09731 Mitofilin: Mitochondr 61.0 4.5E+02 0.0098 33.5 19.2 11 331-341 519-529 (582)
72 PRK00409 recombination and DNA 60.6 2.8E+02 0.0061 37.1 17.7 16 207-222 703-718 (782)
73 PF10446 DUF2457: Protein of u 59.4 6.6 0.00014 48.1 2.7 12 1354-1365 92-103 (458)
74 KOG2253 U1 snRNP complex, subu 58.2 2.6E+02 0.0056 36.5 15.9 53 584-640 598-654 (668)
75 PF09726 Macoilin: Transmembra 58.0 5.7E+02 0.012 34.0 19.6 11 219-229 632-642 (697)
76 KOG3859 Septins (P-loop GTPase 57.6 1.5E+02 0.0032 35.4 12.7 8 100-107 384-391 (406)
77 KOG0742 AAA+-type ATPase [Post 55.9 5.2E+02 0.011 32.7 19.1 9 371-379 392-400 (630)
78 KOG0577 Serine/threonine prote 55.9 6.1E+02 0.013 33.5 18.4 9 301-309 724-732 (948)
79 KOG4848 Extracellular matrix-a 52.3 4E+02 0.0086 30.2 16.5 20 89-108 198-217 (225)
80 PRK00409 recombination and DNA 51.6 4.6E+02 0.01 35.2 17.5 11 293-303 708-718 (782)
81 PF15558 DUF4659: Domain of un 50.2 5.9E+02 0.013 31.6 18.5 9 351-359 285-293 (376)
82 TIGR02098 MJ0042_CXXC MJ0042 f 49.7 4.9 0.00011 32.9 -0.3 26 949-974 2-36 (38)
83 KOG3634 Troponin [Cytoskeleton 49.0 1.4E+02 0.0031 35.9 11.0 6 235-240 241-246 (361)
84 KOG2507 Ubiquitin regulatory p 48.9 38 0.00083 41.7 6.7 9 292-300 408-416 (506)
85 PF13913 zf-C2HC_2: zinc-finge 48.3 5.1 0.00011 30.6 -0.3 23 964-990 3-25 (25)
86 PRK15103 paraquat-inducible me 46.1 14 0.0003 45.5 2.6 29 946-974 218-246 (419)
87 PF12128 DUF3584: Protein of u 45.1 1.1E+03 0.023 33.4 20.1 31 1038-1068 1107-1143(1201)
88 PF13719 zinc_ribbon_5: zinc-r 44.4 7.3 0.00016 32.3 -0.0 25 949-973 2-35 (37)
89 KOG3634 Troponin [Cytoskeleton 43.8 1.8E+02 0.004 35.0 10.9 8 197-204 239-246 (361)
90 PF09731 Mitofilin: Mitochondr 43.2 8.2E+02 0.018 31.3 21.5 17 231-247 494-510 (582)
91 PF07888 CALCOCO1: Calcium bin 43.1 8.7E+02 0.019 31.5 23.4 35 111-145 428-462 (546)
92 TIGR00570 cdk7 CDK-activating 42.6 5.9E+02 0.013 30.7 14.9 10 214-223 285-294 (309)
93 COG5242 TFB4 RNA polymerase II 42.6 10 0.00023 42.9 0.8 32 943-974 254-285 (296)
94 KOG2507 Ubiquitin regulatory p 42.4 51 0.0011 40.7 6.3 12 289-300 423-434 (506)
95 KOG3130 Uncharacterized conser 42.1 16 0.00034 44.4 2.2 44 1322-1365 262-307 (514)
96 KOG0996 Structural maintenance 39.9 1.1E+03 0.024 33.3 17.9 15 346-360 652-666 (1293)
97 PRK14474 F0F1 ATP synthase sub 37.3 7.1E+02 0.015 28.8 18.7 12 186-197 183-194 (250)
98 KOG0161 Myosin class II heavy 37.2 1.3E+03 0.028 34.5 19.1 21 1102-1122 1801-1821(1930)
99 COG2995 PqiA Uncharacterized p 37.2 19 0.00042 43.8 1.9 42 922-970 200-242 (418)
100 PF10446 DUF2457: Protein of u 36.1 22 0.00049 43.7 2.2 6 1270-1275 13-18 (458)
101 TIGR00155 pqiA_fam integral me 36.1 25 0.00054 43.1 2.6 27 948-974 214-241 (403)
102 PRK04863 mukB cell division pr 36.0 1.6E+03 0.035 32.6 20.7 9 455-463 719-727 (1486)
103 PF09862 DUF2089: Protein of u 35.7 23 0.0005 36.5 2.0 28 952-979 1-29 (113)
104 PF14943 MRP-S26: Mitochondria 35.5 6.5E+02 0.014 27.9 15.2 23 124-146 134-156 (170)
105 PF06098 Radial_spoke_3: Radia 35.4 5.1E+02 0.011 31.0 12.9 14 154-167 228-241 (291)
106 PRK06568 F0F1 ATP synthase sub 34.3 6.5E+02 0.014 27.5 15.3 16 105-120 102-117 (154)
107 PF04147 Nop14: Nop14-like fam 33.5 44 0.00096 44.6 4.5 8 1247-1254 254-261 (840)
108 KOG0943 Predicted ubiquitin-pr 31.8 24 0.00051 47.7 1.5 9 617-625 938-946 (3015)
109 PF13717 zinc_ribbon_4: zinc-r 31.6 17 0.00036 30.2 0.2 25 949-973 2-35 (36)
110 PF09736 Bud13: Pre-mRNA-splic 30.6 4.2E+02 0.0091 28.5 10.3 22 128-149 66-87 (145)
111 PF10147 CR6_interact: Growth 30.6 8.9E+02 0.019 28.0 14.2 8 109-116 199-206 (217)
112 TIGR00570 cdk7 CDK-activating 30.5 1.1E+03 0.023 28.8 17.6 9 235-243 292-300 (309)
113 PF09538 FYDLN_acid: Protein o 29.6 26 0.00057 35.7 1.2 24 951-974 11-37 (108)
114 KOG0127 Nucleolar protein fibr 29.5 32 0.00069 43.4 2.1 9 1140-1148 25-33 (678)
115 PRK02363 DNA-directed RNA poly 28.9 62 0.0013 34.1 3.8 74 378-457 8-84 (129)
116 TIGR02680 conserved hypothetic 28.8 1.6E+03 0.034 32.3 18.0 30 277-309 489-518 (1353)
117 smart00017 OSTEO Osteopontin. 28.6 49 0.0011 38.0 3.1 31 1289-1330 43-73 (287)
118 TIGR02680 conserved hypothetic 28.0 1.6E+03 0.034 32.3 17.7 28 438-471 607-634 (1353)
119 PF06098 Radial_spoke_3: Radia 27.9 4.7E+02 0.01 31.3 11.0 10 116-125 210-219 (291)
120 KOG2038 CAATT-binding transcri 27.7 49 0.0011 43.4 3.3 82 1271-1362 859-949 (988)
121 KOG4691 Uncharacterized conser 27.6 9.6E+02 0.021 27.4 13.0 26 124-149 169-194 (227)
122 PF04931 DNA_pol_phi: DNA poly 27.3 40 0.00087 44.5 2.6 9 1029-1037 507-515 (784)
123 PRK12585 putative monovalent c 27.2 1.4E+02 0.003 33.6 6.2 49 45-93 125-174 (197)
124 KOG0681 Actin-related protein 27.0 4.6E+02 0.01 33.9 11.1 12 417-428 591-602 (645)
125 PRK04863 mukB cell division pr 26.2 2.3E+03 0.049 31.3 20.8 21 1017-1037 1171-1191(1486)
126 KOG2229 Protein required for a 26.1 71 0.0015 40.4 4.1 104 292-427 48-152 (616)
127 PF12128 DUF3584: Protein of u 25.5 2.1E+03 0.046 30.6 21.5 31 588-618 1115-1145(1201)
128 PLN02372 violaxanthin de-epoxi 24.9 1E+03 0.022 30.0 13.1 17 10-26 364-380 (455)
129 PLN02316 synthase/transferase 24.8 2.1E+02 0.0046 39.4 8.4 23 384-406 601-623 (1036)
130 PF05918 API5: Apoptosis inhib 24.5 25 0.00054 44.7 0.0 10 1095-1104 457-466 (556)
131 PRK06568 F0F1 ATP synthase sub 24.3 9.5E+02 0.021 26.2 14.9 8 21-28 38-45 (154)
132 PF14943 MRP-S26: Mitochondria 24.2 1E+03 0.022 26.5 12.8 30 136-165 128-157 (170)
133 PF06409 NPIP: Nuclear pore co 23.8 1.1E+03 0.025 27.6 12.4 26 142-167 202-227 (265)
134 TIGR02300 FYDLN_acid conserved 23.8 39 0.00085 35.6 1.2 6 1353-1358 117-122 (129)
135 PRK11637 AmiB activator; Provi 22.8 1.5E+03 0.032 27.9 21.6 6 294-299 420-425 (428)
136 TIGR03321 alt_F1F0_F0_B altern 22.3 1.2E+03 0.026 26.7 15.1 90 25-115 35-124 (246)
137 COG3909 Cytochrome c556 [Energ 21.3 19 0.00041 38.2 -1.6 11 912-922 91-101 (147)
138 KOG0161 Myosin class II heavy 20.7 3.1E+03 0.067 30.9 19.4 14 1009-1022 1864-1877(1930)
139 PRK06266 transcription initiat 20.5 65 0.0014 35.4 2.2 30 948-977 116-150 (178)
140 KOG4722 Zn-finger protein [Gen 20.4 1.8E+03 0.039 27.9 15.5 13 161-173 480-492 (672)
141 PF12172 DUF35_N: Rubredoxin-l 20.1 34 0.00074 28.0 -0.1 25 946-970 8-32 (37)
No 1
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-35 Score=356.42 Aligned_cols=276 Identities=13% Similarity=0.083 Sum_probs=201.1
Q ss_pred ccccCCCCccCCCCceeecccCCCCCCCCCceeEEEecCc--cEEEecCHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 000640 764 VYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETS 841 (1378)
Q Consensus 764 ~~R~~pLG~DR~~nRYW~f~~~~~~~dp~~grifVE~~dg--~W~~y~t~eeLd~Ll~~Ld~RG~RE~~L~~~L~k~~~~ 841 (1378)
.||+.|+|.||+.+.||++ ..||+||+.|+ .| ||+|.-+|..||.+||.- .=|+.|+..+..+.+.
T Consensus 409 ~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~-~~e~~L~d~i~~~~ee 476 (1414)
T KOG1473|consen 409 SIRHTPIGRDRYGRKYWFI----------SRRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRT-YVEMYLCDGIWERREE 476 (1414)
T ss_pred ceeccCCCcCccccchhce----------eeeeEEecCCCcEEE-EecCcHHHHHHHHHhchH-HHHHhhccchhhhHHH
Confidence 3799999999999999999 66999999988 66 999999999999999843 4688888888875555
Q ss_pred HHHHHHhhccCccc--cCcchhhh--hcccccccCCCCC-----------CCCCCCCCCccCCCCCcccCccchhhhccc
Q 000640 842 FKDKVRRNLQGIDT--VGQSWTAI--KNEAAEMDVDPDF-----------ASSDSPSSTVCGLNSDTLETSSSFRIELGR 906 (1378)
Q Consensus 842 i~e~m~k~~~~~~~--~~~~~~~~--~n~~~e~~~~~~~-----------~~~~sp~s~~~~~~~d~~~~s~s~~iElgr 906 (1378)
|- ++|..|.. +...+.+. ..-.+...++-+| .+..=|-+.|.++. +...++-+-+++- =
T Consensus 477 ~~----rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~-k~v~~~~S~s~~~-e 550 (1414)
T KOG1473|consen 477 II----RQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDID-KVVLVLISASAHQ-E 550 (1414)
T ss_pred HH----HhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchH-hhhhhhhhcccch-H
Confidence 44 45544442 33332110 0000000000000 00000111111111 1111111111111 0
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcccccchhhcchhhhhhhhcccchhhhcccccccCCCCccccccCCCCCCccccchh
Q 000640 907 NEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHS 986 (1378)
Q Consensus 907 ~~~E~~~~~~R~q~f~kWmw~~~~~~~~l~a~k~Gkk~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~~~dl~~~fs~h~ 986 (1378)
.-.|...+.++|++.+ --|..+.+. .+|.++++.| .|.+++.......+.+..++.-| +.++|++|+
T Consensus 551 E~~e~ck~is~~~d~p--~~n~~~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~-------~~tkf~l~~ 617 (1414)
T KOG1473|consen 551 EYVEICKAISQYWDLP--EGNLWRLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSH-------MQTKFALIT 617 (1414)
T ss_pred HHHHHHHHHhhccccc--ccchhhhhh--cccccchhhh--cccCCchhhccCCchhhhccccc-------ccceecccc
Confidence 2345588999999998 777777877 8999999999 89999999999999999999999 889999999
Q ss_pred hhhhhhhhcCcccccCCCCcchhHHHHHHHHHHHHHhcCChhhhhhhhhhhhhHHHHHhhcccCCHHHHHHHHHHHHhhh
Q 000640 987 IQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGI 1066 (1378)
Q Consensus 987 a~c~~K~~~~~~~~~~~~~~lp~~ir~LK~~L~~iEa~ip~eAL~~~W~~~~Rk~W~~~l~~ass~~ellqvL~~le~aI 1066 (1378)
+ ..+++.++--+++.. ...+.++..+|...++.||.++++..|... -|.|...|+.|-++.+|.-.|..+..++
T Consensus 618 n-sd~~~~g~~~t~gt~----~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~ 691 (1414)
T KOG1473|consen 618 N-SDGVTAGNVTTYGTG----SQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSK 691 (1414)
T ss_pred c-ccceeccccccccch----hhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhh
Confidence 9 889988763355555 678889999999999999999999999887 9999999999999999999999999999
Q ss_pred cccccccccc
Q 000640 1067 KRSYLSSNFE 1076 (1378)
Q Consensus 1067 k~d~L~~~~~ 1076 (1378)
+..-..+.|+
T Consensus 692 ~~~~~~~~ss 701 (1414)
T KOG1473|consen 692 RSNAFKAASS 701 (1414)
T ss_pred hhhhhccchh
Confidence 9888777666
No 2
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.48 E-value=4.4e-14 Score=125.72 Aligned_cols=59 Identities=58% Similarity=0.936 Sum_probs=55.6
Q ss_pred hhHHhHHHHHHHHHhhhhhcccCCCCHHHHHHHhhccCc-cHHHHHHHHHHHHHHhchhh
Q 000640 192 ENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHES-RLLGEIHLALLKSIIKDIED 250 (1378)
Q Consensus 192 e~vgdLLmVweFL~sF~~~L~LsPFTLDDf~qAL~~~ds-~LL~EIH~aLLk~ll~d~Ed 250 (1378)
++|+++||||+||++|+++|+|+|||||+|++||.+.++ .||.|||++||++|+++.+|
T Consensus 2 ~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~d 61 (61)
T PF02791_consen 2 EAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEED 61 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccCC
Confidence 689999999999999999999999999999999999766 49999999999999999874
No 3
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.43 E-value=1.8e-13 Score=122.81 Aligned_cols=58 Identities=45% Similarity=0.837 Sum_probs=55.0
Q ss_pred hhHHhHHHHHHHHHhhhhhcccCCCC--HHHHHHHhhccCc-cHHHHHHHHHHHHHHhchh
Q 000640 192 ENVGNLLMVWRFFITFADVLGLWPFT--LDEFVQAFHDHES-RLLGEIHLALLKSIIKDIE 249 (1378)
Q Consensus 192 e~vgdLLmVweFL~sF~~~L~LsPFT--LDDf~qAL~~~ds-~LL~EIH~aLLk~ll~d~E 249 (1378)
+.|+++||||+||++|+++|+|+||+ ||+|++||.+.++ .||++||++||++|+++++
T Consensus 2 ~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 2 EAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 67999999999999999999999999 9999999999776 5999999999999999875
No 4
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.92 E-value=8.9e-09 Score=135.54 Aligned_cols=46 Identities=22% Similarity=0.076 Sum_probs=42.7
Q ss_pred cchhHhhhhcccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 000640 583 GESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRL 628 (1378)
Q Consensus 583 GE~Wl~~L~~g~Y~~LsieeKL~iL~~Lv~~ll~sssVR~~Iderl 628 (1378)
++.-+.-|.+..|.+|....|+.||..||+.++++..++.+|+.+.
T Consensus 650 ~~~~~~kl~~~~v~dl~~~~~~~il~~~~~~l~~~~e~~d~i~~~~ 695 (1404)
T KOG1245|consen 650 HEELMEKLHTLLVFDLRAEEKDKILRQLCQRLLMLGEVVDHIEDRQ 695 (1404)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHhccchhhhhhhhhHH
Confidence 6667888999999999999999999999999999999999999954
No 5
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=98.90 E-value=1.1e-09 Score=89.65 Aligned_cols=37 Identities=46% Similarity=0.744 Sum_probs=31.2
Q ss_pred ccCCCCccCCCCceeecccCCCCCCCCCceeEEEecC
Q 000640 766 RSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHD 802 (1378)
Q Consensus 766 R~~pLG~DR~~nRYW~f~~~~~~~dp~~grifVE~~d 802 (1378)
|+.|||+||++||||||..+...+.+++++||||..+
T Consensus 1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~~ 37 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQGP 37 (38)
T ss_pred CcccccccCCCceEEEEecccccCCCCCceEEEEeCC
Confidence 7899999999999999966555566788999999764
No 6
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=98.70 E-value=1.3e-08 Score=86.45 Aligned_cols=36 Identities=42% Similarity=0.675 Sum_probs=34.8
Q ss_pred EEEecCHHHHHHHHHhc-cccchhHHHHHHHHHHHHH
Q 000640 805 WRLIDTVEAFDALLSSL-DARGTRESHLRIMLQKIET 840 (1378)
Q Consensus 805 W~~y~t~eeLd~Ll~~L-d~RG~RE~~L~~~L~k~~~ 840 (1378)
|+||+++++||+|+.|| ||||+||++|+++|.+++.
T Consensus 1 W~~~~~~e~ld~L~~aL~~prG~RE~~L~~~L~~~~k 37 (46)
T PF15614_consen 1 WGYYDDPEELDELLKALENPRGKRESKLKKELDKHRK 37 (46)
T ss_pred CccccCHHHHHHHHHHHcCcccHhHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999883
No 7
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=98.53 E-value=5.4e-06 Score=90.97 Aligned_cols=63 Identities=27% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccCCccccccChhhhhccccccCCCCCCCCccc
Q 000640 97 LKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTV 176 (1378)
Q Consensus 97 ~kEE~rreKEe~k~k~~~Ek~~~rr~are~a~l~edE~lEl~el~a~sk~l~S~~~Ld~etlqnlds~Rd~Lp~FPp~~V 176 (1378)
.++++++.|++++++.++++.... +.+.+..++..+.....+. ...+++..|||||...+|
T Consensus 154 ~k~eek~~keeekr~~eE~~~~k~------------~q~~~~~FF~k~~~~~~~~-------~~~~~~~~f~pF~~k~~~ 214 (216)
T PF11600_consen 154 AKEEEKRKKEEEKRKKEEEKRLKK------------EQARITSFFKKPKTPKAPK-------EKSDYEKKFLPFFVKDDM 214 (216)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHH------------HHHHHHHHhCCCCCCCCCC-------ccchhhccccCceecCCc
Confidence 444555555555555544411111 1345667776544221211 335667889999998887
Q ss_pred cc
Q 000640 177 RL 178 (1378)
Q Consensus 177 kL 178 (1378)
.|
T Consensus 215 ~l 216 (216)
T PF11600_consen 215 RL 216 (216)
T ss_pred cC
Confidence 65
No 8
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=98.39 E-value=1.9e-07 Score=85.46 Aligned_cols=67 Identities=37% Similarity=0.543 Sum_probs=55.6
Q ss_pred cchhHHHHHHHhhcCCCCccHHHHHHHhhhhccccCCCCCCchhhHHHhhccccc----hhhcccCcceeecc
Q 000640 373 GTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK----LFERIAPSTYCVRP 441 (1378)
Q Consensus 373 gT~K~~~f~vls~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~ls~D~~----Lferiapsty~lr~ 441 (1378)
+|++-+|++||...| ..|++.||++.|+..||.... +|+|.++|++.|.+|++ .|.++.|++|+||.
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~~~~~~-~k~p~~~i~a~ly~~~~~~d~~F~~vg~~~~~L~~ 71 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERGLYKKS-GKTPEATIAAQLYTDIKNEDSRFVKVGPGRWGLRS 71 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHHTS----GGGGGHHHH-HHHHHHH-T-SS-EESSSSEEE-GG
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCCCcc-cCCHHHHHHHHHHHHcccCCCCEEEeCCCcEEeee
Confidence 588999999999999 999999999999999998877 99999999999999998 99999999999983
No 9
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=98.24 E-value=9.6e-07 Score=75.73 Aligned_cols=48 Identities=33% Similarity=0.414 Sum_probs=41.3
Q ss_pred chhHhhhhcccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 000640 584 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAA 631 (1378)
Q Consensus 584 E~Wl~~L~~g~Y~~LsieeKL~iL~~Lv~~ll~sssVR~~IderlEqa 631 (1378)
..|+..|.++.|..|++++||.||++||+.+++++.||++|+++.|++
T Consensus 3 ~~~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~~~e~~ 50 (50)
T PF15612_consen 3 PGLAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEEREEEQ 50 (50)
T ss_dssp GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHT--
T ss_pred hhhhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHHhhccC
Confidence 568899999999999999999999999999999999999999999864
No 10
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.6e-05 Score=94.59 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.8
Q ss_pred ccccCCCcch-hHhhhhcccccCCCH
Q 000640 576 EIDESKPGES-WIQGLAEGDYSHLSV 600 (1378)
Q Consensus 576 eiDes~~GE~-Wl~~L~~g~Y~~Lsi 600 (1378)
-+++++.||| |+.|=..|+++=.+-
T Consensus 719 ~V~esq~aEPGWlaGel~gktGWFPe 744 (1118)
T KOG1029|consen 719 IVFESQAAEPGWLAGELRGKTGWFPE 744 (1118)
T ss_pred EEehhccCCcccccceeccccCcCcH
Confidence 3589999998 999999998887763
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.14 E-value=0.00011 Score=89.76 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=5.8
Q ss_pred hhHHHHHHHhh
Q 000640 375 VKFAAFHVLSL 385 (1378)
Q Consensus 375 ~K~~~f~vls~ 385 (1378)
+|+-+||.--+
T Consensus 479 mKaKlLqF~~N 489 (811)
T KOG4364|consen 479 MKAKLLQFDKN 489 (811)
T ss_pred hHHHHhhhccc
Confidence 55555555443
No 12
>PTZ00121 MAEBL; Provisional
Probab=98.12 E-value=8.9e-05 Score=95.71 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=5.4
Q ss_pred cEEEecCHHHHH
Q 000640 804 TWRLIDTVEAFD 815 (1378)
Q Consensus 804 ~W~~y~t~eeLd 815 (1378)
.|-+-|+++..+
T Consensus 1818 NLlv~~~~e~~~ 1829 (2084)
T PTZ00121 1818 NLVINDSKEMED 1829 (2084)
T ss_pred cccccchhHHHH
Confidence 443344444444
No 13
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.12 E-value=2.5e-05 Score=101.22 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=7.0
Q ss_pred HHHHHHHhccCCcc
Q 000640 136 ELMDLAAASKGLSS 149 (1378)
Q Consensus 136 El~el~a~sk~l~S 149 (1378)
+-..+....+++++
T Consensus 526 ~~~~~~~~~~~~~~ 539 (1021)
T PTZ00266 526 NSYFLKGMENGLSA 539 (1021)
T ss_pred hhhhhhhccccccc
Confidence 34444555555555
No 14
>PTZ00121 MAEBL; Provisional
Probab=98.07 E-value=0.00014 Score=93.96 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Q 000640 824 RGTRESHLRIMLQKIETSFKDKVRRNL 850 (1378)
Q Consensus 824 RG~RE~~L~~~L~k~~~~i~e~m~k~~ 850 (1378)
+..|..++.....++...|...|.+++
T Consensus 1793 s~aR~QqV~dEVdkY~AIIeqrIQqNL 1819 (2084)
T PTZ00121 1793 RMEVDKKIKDIFDNFANIIEGGKEGNL 1819 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344556666666666555555555544
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00015 Score=89.26 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000640 37 NEERMRKEMEKHERERRKEEE 57 (1378)
Q Consensus 37 ~EEr~rkE~Ek~erer~keeE 57 (1378)
+||..||++|++|.||+++.|
T Consensus 352 reE~ekkererqEqErk~qlE 372 (1118)
T KOG1029|consen 352 REEEEKKERERQEQERKAQLE 372 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.99 E-value=7.4e-05 Score=97.09 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=4.0
Q ss_pred cCCCCccH
Q 000640 386 EGSKGLTV 393 (1378)
Q Consensus 386 ~G~~gl~v 393 (1378)
.|+.||.|
T Consensus 721 ~~~~~~~~ 728 (1021)
T PTZ00266 721 KGNTGMNV 728 (1021)
T ss_pred cCCCccee
Confidence 35555544
No 17
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=97.88 E-value=0.00035 Score=76.95 Aligned_cols=18 Identities=56% Similarity=0.534 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000640 89 YLRAEKRRLKEELRMEKQ 106 (1378)
Q Consensus 89 ~er~Ek~r~kEE~rreKE 106 (1378)
.+++++.+.+++.+++++
T Consensus 132 ~ek~ek~~~kee~~kek~ 149 (216)
T PF11600_consen 132 EEKAEKEREKEEKRKEKE 149 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 18
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.98 E-value=0.03 Score=63.37 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000640 90 LRAEKRRLKEELRMEKQAAKRK 111 (1378)
Q Consensus 90 er~Ek~r~kEE~rreKEe~k~k 111 (1378)
.|++++.++++++-.-|+++-+
T Consensus 389 areerrkqkeeeklk~e~qkik 410 (445)
T KOG2891|consen 389 AREERRKQKEEEKLKAEEQKIK 410 (445)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 19
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.88 E-value=0.068 Score=60.70 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000640 93 EKRRLKEELRMEKQAAKRKVAIE 115 (1378)
Q Consensus 93 Ek~r~kEE~rreKEe~k~k~~~E 115 (1378)
||.+.+|+.|++|+++|-++++.
T Consensus 385 ekieareerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 385 EKIEAREERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 45555666666666666666554
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.65 E-value=0.047 Score=68.28 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=15.0
Q ss_pred hcccCCCCHHHHHHHhhcc-CccHHH
Q 000640 210 VLGLWPFTLDEFVQAFHDH-ESRLLG 234 (1378)
Q Consensus 210 ~L~LsPFTLDDf~qAL~~~-ds~LL~ 234 (1378)
-..|+...+.+|-.++..+ |-.||.
T Consensus 1064 KYDl~~wkyaeLRDtINTS~DieLL~ 1089 (1259)
T KOG0163|consen 1064 KYDLSKWKYAELRDTINTSCDIELLE 1089 (1259)
T ss_pred ccccccccHHHHHHhhcccccHHHHH
Confidence 3556667777777777653 334553
No 21
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.03 Score=70.40 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=9.7
Q ss_pred hHHHHHHHhhcCCCCccHH
Q 000640 376 KFAAFHVLSLEGSKGLTVL 394 (1378)
Q Consensus 376 K~~~f~vls~~G~~gl~v~ 394 (1378)
..+.|.-|-..|+.=|.++
T Consensus 549 ghEsFtnlRsrgsslC~~a 567 (1064)
T KOG1144|consen 549 GHESFTNLRSRGSSLCDLA 567 (1064)
T ss_pred CchhhhhhhhccccccceE
Confidence 3555555555555544443
No 22
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=96.48 E-value=0.12 Score=55.05 Aligned_cols=50 Identities=34% Similarity=0.458 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000640 46 EKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKR 95 (1378)
Q Consensus 46 Ek~erer~keeEr~ere~~~EEER~~rE~~rEeeR~eke~~kE~er~Ek~ 95 (1378)
|...+.++.+++++.+|.+.|++|+.+++.....+.+.+.++.+++++..
T Consensus 68 eEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KEe~~ 117 (157)
T PF15236_consen 68 EEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKEEEQ 117 (157)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666666766666665555555544444444333
No 23
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.44 E-value=0.075 Score=65.31 Aligned_cols=8 Identities=38% Similarity=0.360 Sum_probs=3.9
Q ss_pred cCCCCHHH
Q 000640 213 LWPFTLDE 220 (1378)
Q Consensus 213 LsPFTLDD 220 (1378)
|.|.||+-
T Consensus 425 id~~tLev 432 (489)
T PF05262_consen 425 IDPETLEV 432 (489)
T ss_pred cCccccee
Confidence 34555543
No 24
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.01 E-value=0.088 Score=66.02 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Q 000640 117 ATARKMAKESMDLIEDEQLELMDLA 141 (1378)
Q Consensus 117 ~~~rr~are~a~l~edE~lEl~el~ 141 (1378)
+.+-|.|.....+|+|+--.++.+.
T Consensus 1011 ~la~RlA~sd~~~v~d~~~~~~~~v 1035 (1259)
T KOG0163|consen 1011 ELALRLANSDGGQVEDSPPVIRALV 1035 (1259)
T ss_pred HHHHHHhhccCCccccccHHHHhhc
Confidence 3445566666667777655444443
No 25
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=95.96 E-value=0.38 Score=57.88 Aligned_cols=9 Identities=0% Similarity=0.095 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000640 299 WHEIFRQLA 307 (1378)
Q Consensus 299 WPEILRq~l 307 (1378)
|.-+++..|
T Consensus 305 Y~a~Ira~I 313 (387)
T PRK09510 305 YAGQIKSAI 313 (387)
T ss_pred HHHHHHHHH
Confidence 334444433
No 26
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.065 Score=67.53 Aligned_cols=10 Identities=30% Similarity=0.375 Sum_probs=4.3
Q ss_pred cccccccCCC
Q 000640 1115 DASIMYVKPE 1124 (1378)
Q Consensus 1115 Da~I~y~~~~ 1124 (1378)
|+-..|...-
T Consensus 911 D~f~~y~e~~ 920 (1064)
T KOG1144|consen 911 DAFTKYIEEI 920 (1064)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 27
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=95.42 E-value=0.76 Score=49.23 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000640 49 ERERRKEEERLMRERQREEERSLREQKREM 78 (1378)
Q Consensus 49 erer~keeEr~ere~~~EEER~~rE~~rEe 78 (1378)
.++...|++|..+++...+.+.+.++.+..
T Consensus 82 ~~EE~~EE~Rl~rere~~q~~~E~E~~~~~ 111 (157)
T PF15236_consen 82 RREEEEEEERLAREREELQRQFEEEQRKQR 111 (157)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444333
No 28
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=95.39 E-value=1.4 Score=47.94 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 000640 137 LMDLAAA 143 (1378)
Q Consensus 137 l~el~a~ 143 (1378)
+|+--..
T Consensus 151 IMKRTRk 157 (171)
T PF05672_consen 151 IMKRTRK 157 (171)
T ss_pred HHHHhcc
Confidence 4444333
No 29
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=95.12 E-value=1.7 Score=47.19 Aligned_cols=7 Identities=57% Similarity=0.691 Sum_probs=3.4
Q ss_pred hHHHHHH
Q 000640 130 IEDEQLE 136 (1378)
Q Consensus 130 ~edE~lE 136 (1378)
.+.|+|+
T Consensus 137 ~eqERle 143 (171)
T PF05672_consen 137 EEQERLE 143 (171)
T ss_pred HHHHHHH
Confidence 4445555
No 30
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.70 E-value=0.45 Score=58.60 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHhCC
Q 000640 298 TWHEIFRQLALSAGF 312 (1378)
Q Consensus 298 TWPEILRq~llsaG~ 312 (1378)
|--.||=.||.++||
T Consensus 521 ~tatll~s~Lq~aG~ 535 (591)
T KOG2412|consen 521 TTATLLNSFLQTAGF 535 (591)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444455555544
No 31
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.22 Score=55.99 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=4.9
Q ss_pred CHHHHHHHhh
Q 000640 217 TLDEFVQAFH 226 (1378)
Q Consensus 217 TLDDf~qAL~ 226 (1378)
.|+||..++.
T Consensus 216 ~ledLas~f~ 225 (299)
T KOG3054|consen 216 PLEDLASEFG 225 (299)
T ss_pred eHHHHHHHhC
Confidence 4455554444
No 32
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.21 Score=56.15 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=4.1
Q ss_pred HHHHHhhcc
Q 000640 220 EFVQAFHDH 228 (1378)
Q Consensus 220 Df~qAL~~~ 228 (1378)
||++.+...
T Consensus 204 eFv~YIk~n 212 (299)
T KOG3054|consen 204 EFVEYIKKN 212 (299)
T ss_pred HHHHHHHhc
Confidence 444444443
No 33
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.39 E-value=0.63 Score=57.41 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhcc--cCCCCH
Q 000640 197 LLMVWRFFITFADVLG--LWPFTL 218 (1378)
Q Consensus 197 LLmVweFL~sF~~~L~--LsPFTL 218 (1378)
|..+.+-|.+|..--. +.||-+
T Consensus 357 L~qI~dkl~s~~~~~~~~~~pl~~ 380 (591)
T KOG2412|consen 357 LRQIFDKLDSLFGGIPDIVDPLAY 380 (591)
T ss_pred HHHHHHHHHHHhcCCCCCCCchhH
Confidence 6677777766543333 444443
No 34
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=92.93 E-value=9.9 Score=43.86 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.4
Q ss_pred ccccccChh
Q 000640 148 SSIIHLDLE 156 (1378)
Q Consensus 148 ~S~~~Ld~e 156 (1378)
|.+.+-.|+
T Consensus 239 pvp~~~G~~ 247 (264)
T PF13904_consen 239 PVPLNQGYD 247 (264)
T ss_pred CCCcCCCCC
Confidence 333443333
No 35
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=92.14 E-value=4.1 Score=47.80 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhCC
Q 000640 300 HEIFRQLALSAGF 312 (1378)
Q Consensus 300 PEILRq~llsaG~ 312 (1378)
.+|-+.|+...-|
T Consensus 311 ~~Iq~rfl~~~sf 323 (387)
T COG3064 311 SAIQSRFLDADSF 323 (387)
T ss_pred HHHHHHHhccccc
Confidence 3555666666555
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.73 E-value=10 Score=47.80 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=19.3
Q ss_pred hhccccccC----CCCCCC--CcccccCCCCCCCCCCCC
Q 000640 158 LQNLDSFRD----SLSVFP--PKTVRLKRPFSVQPWSDS 190 (1378)
Q Consensus 158 lqnlds~Rd----~Lp~FP--p~~VkLkrP~ps~p~~vp 190 (1378)
|.+++.|-. .+|++| +..|.+.+|-|..|...|
T Consensus 500 l~~~~l~~~~~~~~~p~~p~~~~~vvi~qp~p~~~~~~~ 538 (546)
T PF07888_consen 500 LGHYSLCEQGQPGSLPPSPREPERVVISQPAPISSQHQP 538 (546)
T ss_pred CCCcCcccCCCCCCCCCCCCccccceeCCCCCCCCCCCC
Confidence 444555533 246777 335777888877755543
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=90.97 E-value=12 Score=47.00 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.4
Q ss_pred ccCCCCHHHHHHHhhc
Q 000640 212 GLWPFTLDEFVQAFHD 227 (1378)
Q Consensus 212 ~LsPFTLDDf~qAL~~ 227 (1378)
.+.||..+++++....
T Consensus 278 ~i~P~~iee~~~~~~~ 293 (520)
T PRK12704 278 RIHPARIEEMVEKARK 293 (520)
T ss_pred CcCCCCHHHHHHHHHH
Confidence 5779999888887663
No 38
>PRK00106 hypothetical protein; Provisional
Probab=90.85 E-value=17 Score=46.07 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=6.1
Q ss_pred hhHHHHHHHHhc
Q 000640 348 AENAFAWMREKG 359 (1378)
Q Consensus 348 ~~~~~~~m~~~G 359 (1378)
+.....+++++|
T Consensus 398 a~iGa~ll~~~~ 409 (535)
T PRK00106 398 VEIGMEFARKYK 409 (535)
T ss_pred HHHHHHHHHHcC
Confidence 344455555555
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=90.47 E-value=25 Score=44.42 Aligned_cols=6 Identities=0% Similarity=0.025 Sum_probs=2.2
Q ss_pred HHHHHh
Q 000640 353 AWMREK 358 (1378)
Q Consensus 353 ~~m~~~ 358 (1378)
.++.++
T Consensus 388 ~il~~~ 393 (520)
T PRK12704 388 ELAKKY 393 (520)
T ss_pred HHHHHc
Confidence 333333
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=29 Score=42.78 Aligned_cols=19 Identities=0% Similarity=0.057 Sum_probs=10.4
Q ss_pred HhcchhHHHHHHHHHHHHH
Q 000640 614 ANEGNSIRAVLEDRLEAAN 632 (1378)
Q Consensus 614 ll~sssVR~~IderlEqa~ 632 (1378)
+|+...+++.++..|++-+
T Consensus 599 vLd~~lf~e~v~ykv~eHq 617 (630)
T KOG0742|consen 599 VLDEALFDERVDYKVQEHQ 617 (630)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4455555666666665543
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.00 E-value=3.2 Score=54.58 Aligned_cols=17 Identities=47% Similarity=0.644 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000640 46 EKHERERRKEEERLMRE 62 (1378)
Q Consensus 46 Ek~erer~keeEr~ere 62 (1378)
+.++.+|++|||+..|+
T Consensus 852 ~~ee~~r~~eee~~~r~ 868 (1018)
T KOG2002|consen 852 ELEEARRKEEEEKARRE 868 (1018)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 42
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=87.60 E-value=2.6 Score=52.40 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=23.3
Q ss_pred CCCCCChhhHHhHHHHHHHHHhhhhhcccC
Q 000640 185 QPWSDSEENVGNLLMVWRFFITFADVLGLW 214 (1378)
Q Consensus 185 ~p~~vp~e~vgdLLmVweFL~sF~~~L~Ls 214 (1378)
.++++|...|.+.-++|+-=++|+..-.-.
T Consensus 411 ~dlp~~~~~v~~~ks~we~g~v~~~~~~~~ 440 (492)
T PF02029_consen 411 SDLPVPAEGVRSIKSMWEKGNVFSSSASKG 440 (492)
T ss_pred ccCCcchHHHhhhhhhcccCCcccCCCCCC
Confidence 366777788999999999988888655443
No 43
>PRK00106 hypothetical protein; Provisional
Probab=87.32 E-value=45 Score=42.43 Aligned_cols=6 Identities=17% Similarity=0.827 Sum_probs=2.3
Q ss_pred HHHHhc
Q 000640 354 WMREKG 359 (1378)
Q Consensus 354 ~m~~~G 359 (1378)
+|.--|
T Consensus 381 LLHDIG 386 (535)
T PRK00106 381 FLHDMG 386 (535)
T ss_pred HHHhcc
Confidence 333333
No 44
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.59 E-value=68 Score=36.89 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=4.7
Q ss_pred HHHHHhchh
Q 000640 241 LKSIIKDIE 249 (1378)
Q Consensus 241 Lk~ll~d~E 249 (1378)
|+.|-.+++
T Consensus 191 L~~L~~EL~ 199 (246)
T PF00769_consen 191 LKELKSELE 199 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
No 45
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=23 Score=41.26 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000640 109 KRKVAIEKATARKMAKE 125 (1378)
Q Consensus 109 k~k~~~Ek~~~rr~are 125 (1378)
|-+++.++.+++|.|+.
T Consensus 161 RV~~~Ie~DKaeRka~~ 177 (290)
T KOG2689|consen 161 RVLRQIERDKAERKAKY 177 (290)
T ss_pred HHHHHHHHhHHHHHHHh
Confidence 33445555555555543
No 46
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.61 E-value=16 Score=42.59 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHh
Q 000640 129 LIEDEQLELMDLAAA 143 (1378)
Q Consensus 129 l~edE~lEl~el~a~ 143 (1378)
.|+.+..+.......
T Consensus 165 ~Ie~DKaeRka~~e~ 179 (290)
T KOG2689|consen 165 QIERDKAERKAKYEN 179 (290)
T ss_pred HHHHhHHHHHHHhcc
Confidence 355555555554443
No 47
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=79.94 E-value=0.56 Score=51.54 Aligned_cols=40 Identities=8% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHhhhhhcccCC-CCHHHHHHHhhccCccHHHHHHHHHHHHHHhc
Q 000640 203 FFITFADVLGLWP-FTLDEFVQAFHDHESRLLGEIHLALLKSIIKD 247 (1378)
Q Consensus 203 FL~sF~~~L~LsP-FTLDDf~qAL~~~ds~LL~EIH~aLLk~ll~d 247 (1378)
+|..|-..+...- ..|+||...+.-.....+ .-|+.|..+
T Consensus 100 lL~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i-----~ri~~L~~~ 140 (188)
T PF09756_consen 100 LLQEFINYIKEHKVVNLEDLAAEFGLRTQDVI-----NRIQELEAE 140 (188)
T ss_dssp HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcceeeHHHHHHHcCCCHHHHH-----HHHHHHHHC
Confidence 5666666676664 478998888877544333 444555544
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.93 E-value=69 Score=39.66 Aligned_cols=8 Identities=50% Similarity=1.095 Sum_probs=4.2
Q ss_pred hcCCCCCH
Q 000640 292 QLLNPLTW 299 (1378)
Q Consensus 292 ~~LdslTW 299 (1378)
..+||.+|
T Consensus 410 ~pvnP~pW 417 (420)
T COG4942 410 QPVNPQPW 417 (420)
T ss_pred CcCCchhh
Confidence 44555555
No 49
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=76.72 E-value=2.4 Score=48.52 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=3.0
Q ss_pred cccchhh
Q 000640 949 LVICDVC 955 (1378)
Q Consensus 949 l~~c~~c 955 (1378)
.--|+-|
T Consensus 38 ~MeCdkC 44 (314)
T PF06524_consen 38 LMECDKC 44 (314)
T ss_pred cccchhh
Confidence 3344444
No 50
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=76.36 E-value=78 Score=36.10 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000640 91 RAEKRRLKEELRMEKQ 106 (1378)
Q Consensus 91 r~Ek~r~kEE~rreKE 106 (1378)
+++|+++++..++.|+
T Consensus 189 keeKKk~K~aKkk~k~ 204 (217)
T PF10147_consen 189 KEEKKKKKEAKKKEKE 204 (217)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 51
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.36 E-value=2.9e+02 Score=36.37 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000640 44 EMEKHERERRKEEERL 59 (1378)
Q Consensus 44 E~Ek~erer~keeEr~ 59 (1378)
|+|-.+|+++++-|+.
T Consensus 842 EmenlErqQkq~iE~~ 857 (1187)
T KOG0579|consen 842 EMENLERQQKQEIEDT 857 (1187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555444433
No 52
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=71.57 E-value=19 Score=45.22 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.9
Q ss_pred CHHHHHHHhhc
Q 000640 217 TLDEFVQAFHD 227 (1378)
Q Consensus 217 TLDDf~qAL~~ 227 (1378)
.|+.+-.||..
T Consensus 389 rleqyt~a~~~ 399 (492)
T PF02029_consen 389 RLEQYTSAIES 399 (492)
T ss_pred hHHHHHHHhhc
Confidence 45555556553
No 53
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=71.14 E-value=22 Score=44.13 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=13.9
Q ss_pred ccchhhhhhcCCCCCHHHHHHHHHHHhCCCCcc
Q 000640 284 GFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKL 316 (1378)
Q Consensus 284 Gf~l~~w~~~LdslTWPEILRq~llsaG~g~~~ 316 (1378)
||.++ ..-..+|=+|.+|-. .|.||..
T Consensus 625 ~cqfr---alyT~~~ETeei~kl---~gmgpk~ 651 (708)
T KOG3654|consen 625 GCQFR---ALYTYMPETEEIRKL---TGMGPKM 651 (708)
T ss_pred cceee---cccccCccHHHHhhh---hccCchh
Confidence 55443 345555666665543 2455554
No 54
>PRK12705 hypothetical protein; Provisional
Probab=69.43 E-value=3e+02 Score=35.13 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=7.0
Q ss_pred hhHHHHHHHHhc
Q 000640 348 AENAFAWMREKG 359 (1378)
Q Consensus 348 ~~~~~~~m~~~G 359 (1378)
+.....+++++|
T Consensus 371 ~~iGaeLlkk~~ 382 (508)
T PRK12705 371 VEIGAELARKFN 382 (508)
T ss_pred HHHHHHHHHhcC
Confidence 344566666666
No 55
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=69.01 E-value=78 Score=39.34 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=13.6
Q ss_pred ccccCCCCCCCCcccccCCCCCCC
Q 000640 162 DSFRDSLSVFPPKTVRLKRPFSVQ 185 (1378)
Q Consensus 162 ds~Rd~Lp~FPp~~VkLkrP~ps~ 185 (1378)
+.|-+.|..+||.+..+..|.++.
T Consensus 148 d~~i~~l~~~~~~~~~~~~~~~~~ 171 (445)
T PRK13428 148 DRFLDELDAMAPSTADVDYPLLAK 171 (445)
T ss_pred HHHHHHhhccCCCchhhcCchhhh
Confidence 334444555666666666666554
No 56
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.65 E-value=2.7e+02 Score=36.65 Aligned_cols=68 Identities=34% Similarity=0.422 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000640 6 KCDEARIAREVEANE-IRIQKELERQDNLR-----RKNEERMRK-EMEKH--ERERRKEEERLMRERQREEERSLRE 73 (1378)
Q Consensus 6 k~e~~r~~re~e~~e-~r~rkE~Ekqe~~r-----rk~EEr~rk-E~Ek~--erer~keeEr~ere~~~EEER~~rE 73 (1378)
|-++-|-.|..+..+ ++++||.-+++.+. ...|+..|+ +.|.- .|.-..|.|-.+|.++.+-|+.+.+
T Consensus 784 k~eemrflRrQeLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~ 860 (1187)
T KOG0579|consen 784 KDEEMRFLRRQELRELRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQA 860 (1187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554433 44555555554332 222222221 22222 2222334555555555555555443
No 57
>PLN03086 PRLI-interacting factor K; Provisional
Probab=67.81 E-value=27 Score=44.49 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=5.4
Q ss_pred cccchhhhhh
Q 000640 981 KFSEHSIQCE 990 (1378)
Q Consensus 981 ~fs~h~a~c~ 990 (1378)
....|..+|-
T Consensus 529 ~Lt~HE~~CG 538 (567)
T PLN03086 529 GMSEHESICG 538 (567)
T ss_pred hHHHHHHhcC
Confidence 4555666553
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.71 E-value=4e+02 Score=35.33 Aligned_cols=8 Identities=38% Similarity=0.347 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 000640 131 EDEQLELM 138 (1378)
Q Consensus 131 edE~lEl~ 138 (1378)
|.|..||.
T Consensus 642 d~ei~~lk 649 (697)
T PF09726_consen 642 DKEIEELK 649 (697)
T ss_pred HHHHHHHH
Confidence 44444433
No 59
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=66.69 E-value=2e+02 Score=31.30 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 000640 29 RQDNLRRKNEERM 41 (1378)
Q Consensus 29 kqe~~rrk~EEr~ 41 (1378)
..+..+|-++++.
T Consensus 34 ~~ei~rRvee~r~ 46 (149)
T PF15346_consen 34 EKEIQRRVEEERK 46 (149)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 60
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=66.57 E-value=30 Score=43.05 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHh
Q 000640 232 LLGEIHLALLKSIIK 246 (1378)
Q Consensus 232 LL~EIH~aLLk~ll~ 246 (1378)
-|.++|..||.+|-.
T Consensus 509 tl~sv~~~~lcaidq 523 (708)
T KOG3654|consen 509 TLESVHSGLLCAIDQ 523 (708)
T ss_pred ChHhhhhhhhccccc
Confidence 366777776665543
No 61
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=64.77 E-value=2.3e+02 Score=31.50 Aligned_cols=12 Identities=58% Similarity=0.911 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 000640 44 EMEKHERERRKE 55 (1378)
Q Consensus 44 E~Ek~erer~ke 55 (1378)
+.|+.-.+++.+
T Consensus 68 ~~E~E~~~~~~e 79 (201)
T PF12072_consen 68 ELERELKERRKE 79 (201)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 62
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=64.66 E-value=3.6 Score=53.46 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=25.6
Q ss_pred ccCCCcchhHhhhhcccccCCCHHHHHHHHHHHHHHHhc
Q 000640 578 DESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANE 616 (1378)
Q Consensus 578 Des~~GE~Wl~~L~~g~Y~~LsieeKL~iL~~Lv~~ll~ 616 (1378)
++.+.|-.-+.....|.|+-.+++.+..+|.++++-+--
T Consensus 654 ~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~ 692 (1516)
T KOG1832|consen 654 NRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCP 692 (1516)
T ss_pred ccccCceEEEeecccccccccCHHHHHHHHhhhheeecC
Confidence 444466666677777777777777777777777665443
No 63
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.46 E-value=1.8e+02 Score=38.80 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=9.8
Q ss_pred hhhhhcccCCCCHHHHH
Q 000640 206 TFADVLGLWPFTLDEFV 222 (1378)
Q Consensus 206 sF~~~L~LsPFTLDDf~ 222 (1378)
.+...|.|-+++.|+-.
T Consensus 691 ~~~~~ldl~G~~~~eA~ 707 (771)
T TIGR01069 691 EASLTLDLRGQRSEEAL 707 (771)
T ss_pred CCCceEECCCCCHHHHH
Confidence 45556666666665544
No 64
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.35 E-value=86 Score=38.27 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000640 83 KFLQKEYLRAEKRRLKEELRMEKQAAKR--KVAIEKATARKMAKESMDLIEDEQLELMDL 140 (1378)
Q Consensus 83 ke~~kE~er~Ek~r~kEE~rreKEe~k~--k~~~Ek~~~rr~are~a~l~edE~lEl~el 140 (1378)
+.-++..++.+|+.+..+.+.+-+-.|+ .+.+||+..|+....-+..+|..+.|+..+
T Consensus 316 ~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql 375 (442)
T PF06637_consen 316 QASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555665555555544444343 345566555544433333344444444433
No 65
>PTZ00491 major vault protein; Provisional
Probab=63.91 E-value=2.4e+02 Score=38.01 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000640 26 ELERQDNLRRKNEERMRKEM 45 (1378)
Q Consensus 26 E~Ekqe~~rrk~EEr~rkE~ 45 (1378)
++|+|...-+.+.|+.|++.
T Consensus 682 ~Lerqk~~d~~~aE~~r~~l 701 (850)
T PTZ00491 682 RLERQKMHDKAKAEEQRTKL 701 (850)
T ss_pred hhHHHhhhhHHHHHHHHHHH
Confidence 34555555455555555443
No 66
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.56 E-value=3.9 Score=53.19 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=13.3
Q ss_pred CCCcchhHhhhhcccccCCCHHHHHHHHHH
Q 000640 580 SKPGESWIQGLAEGDYSHLSVEERLNALVA 609 (1378)
Q Consensus 580 s~~GE~Wl~~L~~g~Y~~LsieeKL~iL~~ 609 (1378)
++-|---|..|.. +---+...+-|.+|.|
T Consensus 737 ~ndGIkiLl~Ll~-~k~P~t~aD~IRalAc 765 (1516)
T KOG1832|consen 737 GNDGIKILLKLLQ-YKNPPTTADCIRALAC 765 (1516)
T ss_pred cCccHHHHHHHHh-ccCCCCcHHHHHHHHH
Confidence 4455555555555 2223333444444443
No 67
>PLN03086 PRLI-interacting factor K; Provisional
Probab=62.38 E-value=42 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=11.0
Q ss_pred CCCccccccCCCCCCccccchhhhh
Q 000640 965 HCPSCHRTFGAVDKSSKFSEHSIQC 989 (1378)
Q Consensus 965 hc~~cH~tf~~~dl~~~fs~h~a~c 989 (1378)
.|..|.+.|-. --+..|..+|
T Consensus 543 ~C~~Cgk~Vrl----rdm~~H~~~~ 563 (567)
T PLN03086 543 PCDSCGRSVML----KEMDIHQIAV 563 (567)
T ss_pred EccccCCeeee----hhHHHHHHHh
Confidence 46666666653 1244555555
No 68
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.19 E-value=2e+02 Score=38.40 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=6.2
Q ss_pred cCCCCCHHHHH
Q 000640 293 LLNPLTWHEIF 303 (1378)
Q Consensus 293 ~LdslTWPEIL 303 (1378)
.|-.+|-.|-+
T Consensus 697 dl~G~~~~eA~ 707 (771)
T TIGR01069 697 DLRGQRSEEAL 707 (771)
T ss_pred ECCCCCHHHHH
Confidence 45556666555
No 69
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=61.90 E-value=2.6 Score=53.09 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=9.3
Q ss_pred ecCHHHHHHHHHhc
Q 000640 808 IDTVEAFDALLSSL 821 (1378)
Q Consensus 808 y~t~eeLd~Ll~~L 821 (1378)
.+.++.||-||.|+
T Consensus 236 ~sD~e~Idrli~C~ 249 (556)
T PF05918_consen 236 PSDPESIDRLISCL 249 (556)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 45677777777754
No 70
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.44 E-value=4.1e+02 Score=33.24 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=6.0
Q ss_pred HHhhhhhccc
Q 000640 204 FITFADVLGL 213 (1378)
Q Consensus 204 L~sF~~~L~L 213 (1378)
|+.||+..+=
T Consensus 308 l~rFG~~~~g 317 (420)
T COG4942 308 LRRFGQADGG 317 (420)
T ss_pred HHHhcccCCC
Confidence 5667765543
No 71
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=60.96 E-value=4.5e+02 Score=33.55 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=5.6
Q ss_pred CCCCccchhhh
Q 000640 331 EGKGCEDIVST 341 (1378)
Q Consensus 331 eg~~~edvi~~ 341 (1378)
.|.|-+.||+.
T Consensus 519 ~~~d~~~ilar 529 (582)
T PF09731_consen 519 EGDDVESILAR 529 (582)
T ss_pred CCCCHHHHHHH
Confidence 45555555544
No 72
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.58 E-value=2.8e+02 Score=37.11 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=8.5
Q ss_pred hhhhcccCCCCHHHHH
Q 000640 207 FADVLGLWPFTLDEFV 222 (1378)
Q Consensus 207 F~~~L~LsPFTLDDf~ 222 (1378)
+...|.|-+++.|+-.
T Consensus 703 ~~~~lDL~G~~~eeA~ 718 (782)
T PRK00409 703 VSLELDLRGMRYEEAL 718 (782)
T ss_pred CCceEECCCCCHHHHH
Confidence 4445555666655433
No 73
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=59.39 E-value=6.6 Score=48.09 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=7.4
Q ss_pred cccCcCCCCCCc
Q 000640 1354 IDMSEASDQNGI 1365 (1378)
Q Consensus 1354 ~~m~~~~d~n~~ 1365 (1378)
.+.++.+|||--
T Consensus 92 ~~~~~~ddG~~T 103 (458)
T PF10446_consen 92 HDFDSDDDGNET 103 (458)
T ss_pred ccccccccCccC
Confidence 445557888555
No 74
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=58.25 E-value=2.6e+02 Score=36.53 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=23.2
Q ss_pred chhHhhhhcccccCCCHHHHHHHHHHHHHHHhcchh---HHHHHHHHHHH-HHHHHHHHHH
Q 000640 584 ESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNS---IRAVLEDRLEA-ANALKKQMWA 640 (1378)
Q Consensus 584 E~Wl~~L~~g~Y~~LsieeKL~iL~~Lv~~ll~sss---VR~~IderlEq-a~aLrkq~w~ 640 (1378)
.||+.-.-.-+.+.=. -.+.-|+|+.+...++ |-..|..-|++ +-...--||-
T Consensus 598 rpwV~KKIiEflGeeE----~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWR 654 (668)
T KOG2253|consen 598 RPWVNKKIIEFLGEEE----DTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMWR 654 (668)
T ss_pred HHHHHHHHHHHhCCcc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3666555444333211 1344555665555443 22333333333 3344445666
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.99 E-value=5.7e+02 Score=34.00 Aligned_cols=11 Identities=0% Similarity=0.045 Sum_probs=4.4
Q ss_pred HHHHHHhhccC
Q 000640 219 DEFVQAFHDHE 229 (1378)
Q Consensus 219 DDf~qAL~~~d 229 (1378)
+.+...|...|
T Consensus 632 ei~~~~~~~~d 642 (697)
T PF09726_consen 632 EIAQGQLRKKD 642 (697)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 76
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.62 E-value=1.5e+02 Score=35.39 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000640 100 ELRMEKQA 107 (1378)
Q Consensus 100 E~rreKEe 107 (1378)
++|++-++
T Consensus 384 ~~rr~Lee 391 (406)
T KOG3859|consen 384 EKRKQLEE 391 (406)
T ss_pred HHHHHHHH
Confidence 33333333
No 77
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=5.2e+02 Score=32.66 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=5.7
Q ss_pred CCcchhHHH
Q 000640 371 TPGTVKFAA 379 (1378)
Q Consensus 371 ~~gT~K~~~ 379 (1378)
.|||-|+-+
T Consensus 392 PPGTGKTm~ 400 (630)
T KOG0742|consen 392 PPGTGKTMF 400 (630)
T ss_pred CCCCCchHH
Confidence 577777644
No 78
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.89 E-value=6.1e+02 Score=33.46 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 000640 301 EIFRQLALS 309 (1378)
Q Consensus 301 EILRq~lls 309 (1378)
|+-|-|+.-
T Consensus 724 ELrrKHamq 732 (948)
T KOG0577|consen 724 ELRRKHAMQ 732 (948)
T ss_pred HHHHHHHHH
Confidence 444444443
No 79
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=52.29 E-value=4e+02 Score=30.22 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000640 89 YLRAEKRRLKEELRMEKQAA 108 (1378)
Q Consensus 89 ~er~Ek~r~kEE~rreKEe~ 108 (1378)
.|++||++++|+.|++|++.
T Consensus 198 kEkeekK~~KeaKrk~k~ek 217 (225)
T KOG4848|consen 198 KEKEEKKAVKEAKRKEKQEK 217 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555565555555433
No 80
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.56 E-value=4.6e+02 Score=35.18 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=5.7
Q ss_pred cCCCCCHHHHH
Q 000640 293 LLNPLTWHEIF 303 (1378)
Q Consensus 293 ~LdslTWPEIL 303 (1378)
.|-.+|--|.+
T Consensus 708 DL~G~~~eeA~ 718 (782)
T PRK00409 708 DLRGMRYEEAL 718 (782)
T ss_pred ECCCCCHHHHH
Confidence 44455655553
No 81
>PF15558 DUF4659: Domain of unknown function (DUF4659)
Probab=50.21 E-value=5.9e+02 Score=31.57 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.8
Q ss_pred HHHHHHHhc
Q 000640 351 AFAWMREKG 359 (1378)
Q Consensus 351 ~~~~m~~~G 359 (1378)
.++.+++++
T Consensus 285 e~~~~kEk~ 293 (376)
T PF15558_consen 285 ELNQEKEKN 293 (376)
T ss_pred HHHHHHHHH
Confidence 334444443
No 82
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=49.67 E-value=4.9 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=20.0
Q ss_pred cccchhhhccccccc---------CCCCccccccC
Q 000640 949 LVICDVCLDSYLCED---------AHCPSCHRTFG 974 (1378)
Q Consensus 949 l~~c~~c~~~y~~~e---------~hc~~cH~tf~ 974 (1378)
...|+.|...|.-.+ -.|+.||.+|.
T Consensus 2 ~~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 357999998776653 48999998875
No 83
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=49.04 E-value=1.4e+02 Score=35.91 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.4
Q ss_pred HHHHHH
Q 000640 235 EIHLAL 240 (1378)
Q Consensus 235 EIH~aL 240 (1378)
+||..|
T Consensus 241 ELhqrI 246 (361)
T KOG3634|consen 241 ELHQRI 246 (361)
T ss_pred HHHHHH
Confidence 344333
No 84
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=48.93 E-value=38 Score=41.65 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=5.5
Q ss_pred hcCCCCCHH
Q 000640 292 QLLNPLTWH 300 (1378)
Q Consensus 292 ~~LdslTWP 300 (1378)
..|++.+|+
T Consensus 408 ~ll~pv~~g 416 (506)
T KOG2507|consen 408 NLLDPVSGG 416 (506)
T ss_pred cccCccchh
Confidence 456666665
No 85
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=48.28 E-value=5.1 Score=30.61 Aligned_cols=23 Identities=30% Similarity=0.875 Sum_probs=18.8
Q ss_pred CCCCccccccCCCCCCccccchhhhhh
Q 000640 964 AHCPSCHRTFGAVDKSSKFSEHSIQCE 990 (1378)
Q Consensus 964 ~hc~~cH~tf~~~dl~~~fs~h~a~c~ 990 (1378)
..|+.|.++|.. ..+..|...|.
T Consensus 3 ~~C~~CgR~F~~----~~l~~H~~~C~ 25 (25)
T PF13913_consen 3 VPCPICGRKFNP----DRLEKHEKICK 25 (25)
T ss_pred CcCCCCCCEECH----HHHHHHHHhcC
Confidence 469999999963 58889998884
No 86
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=46.09 E-value=14 Score=45.46 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=24.1
Q ss_pred hhhcccchhhhcccccccCCCCccccccC
Q 000640 946 RQLLVICDVCLDSYLCEDAHCPSCHRTFG 974 (1378)
Q Consensus 946 ~~~l~~c~~c~~~y~~~e~hc~~cH~tf~ 974 (1378)
.+-+..|+.|+-++-.+..||++||.+..
T Consensus 218 ~~~l~~C~~Cd~l~~~~~a~CpRC~~~L~ 246 (419)
T PRK15103 218 RQGLRSCSCCTAILPADQPVCPRCHTKGY 246 (419)
T ss_pred ccCCCcCCCCCCCCCCCCCCCCCCCCcCc
Confidence 34577899999998888889999997763
No 87
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.12 E-value=1.1e+03 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=16.6
Q ss_pred hhHHHH--HhhcccCCH--HHHHH--HHHHHHhhhcc
Q 000640 1038 RRKTWG--MKLNMSSSA--EEVLQ--LLTILESGIKR 1068 (1378)
Q Consensus 1038 ~Rk~W~--~~l~~ass~--~ellq--vL~~le~aIk~ 1068 (1378)
..+.|+ ..|...||- .-|+. +++.|-.+|+.
T Consensus 1107 ~~~~~rn~~~L~~vsS~G~syLi~~~~~i~l~~~lr~ 1143 (1201)
T PF12128_consen 1107 NDKVIRNDRQLNNVSSHGTSYLILCMFFIALTRMLRG 1143 (1201)
T ss_pred cccccccHHHHHhcCCchHHHHHHHHHHHHHHHHhcC
Confidence 567787 666666653 22222 23445555555
No 88
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=44.36 E-value=7.3 Score=32.29 Aligned_cols=25 Identities=28% Similarity=0.905 Sum_probs=16.4
Q ss_pred cccchhhhcccccccC---------CCCcccccc
Q 000640 949 LVICDVCLDSYLCEDA---------HCPSCHRTF 973 (1378)
Q Consensus 949 l~~c~~c~~~y~~~e~---------hc~~cH~tf 973 (1378)
..+|+.|+-.|--.+. +|+.|+.+|
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 4567777777766554 577777665
No 89
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=43.81 E-value=1.8e+02 Score=35.05 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 000640 197 LLMVWRFF 204 (1378)
Q Consensus 197 LLmVweFL 204 (1378)
+-.+|.-|
T Consensus 239 iKELhqrI 246 (361)
T KOG3634|consen 239 IKELHQRI 246 (361)
T ss_pred HHHHHHHH
Confidence 33344433
No 90
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.21 E-value=8.2e+02 Score=31.26 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHHHHhc
Q 000640 231 RLLGEIHLALLKSIIKD 247 (1378)
Q Consensus 231 ~LL~EIH~aLLk~ll~d 247 (1378)
-||+.+...|+..|+-.
T Consensus 494 g~~~~~~s~~~S~l~~~ 510 (582)
T PF09731_consen 494 GLLGHLLSYLFSLLLFR 510 (582)
T ss_pred CHHHHHHHHHHheeeee
Confidence 45555555555544443
No 91
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=43.13 E-value=8.7e+02 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 000640 111 KVAIEKATARKMAKESMDLIEDEQLELMDLAAASK 145 (1378)
Q Consensus 111 k~~~Ek~~~rr~are~a~l~edE~lEl~el~a~sk 145 (1378)
-++.||+....+..+.++-|.+=+..+-.++...|
T Consensus 428 v~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 428 VAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34445444444444433333322223334444333
No 92
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.60 E-value=5.9e+02 Score=30.75 Aligned_cols=10 Identities=10% Similarity=-0.041 Sum_probs=5.9
Q ss_pred CCCCHHHHHH
Q 000640 214 WPFTLDEFVQ 223 (1378)
Q Consensus 214 sPFTLDDf~q 223 (1378)
.+|+++..+.
T Consensus 285 GGy~~~~~~~ 294 (309)
T TIGR00570 285 GGYTSNLACE 294 (309)
T ss_pred CCcCHHHHHH
Confidence 4677665544
No 93
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=42.55 E-value=10 Score=42.89 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=26.7
Q ss_pred hhhhhhcccchhhhcccccccCCCCccccccC
Q 000640 943 TRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG 974 (1378)
Q Consensus 943 k~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~ 974 (1378)
+|-+.+--+|.+|+-.+-+--.||+.||.-|.
T Consensus 254 ~rvv~~GfvCsVCLsvfc~p~~~C~~C~skF~ 285 (296)
T COG5242 254 NRVVLLGFVCSVCLSVFCRPVPVCKKCKSKFS 285 (296)
T ss_pred ccEEEEeeehhhhheeecCCcCcCcccccccc
Confidence 35556667899999999999999999997664
No 94
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=42.43 E-value=51 Score=40.65 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=8.4
Q ss_pred hhhhcCCCCCHH
Q 000640 289 NWQQLLNPLTWH 300 (1378)
Q Consensus 289 ~w~~~LdslTWP 300 (1378)
.|..+++++.||
T Consensus 423 ~~s~f~~~f~wp 434 (506)
T KOG2507|consen 423 RVSSFANPFSWP 434 (506)
T ss_pred HHHHHhccCCCC
Confidence 455677777777
No 95
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=16 Score=44.37 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred CCCcccCCcccccccCCccchhhhcc-cccccCcccC-cCCCCCCc
Q 000640 1322 NRDVMEVSDEDEDAFGDDAGIEEAVD-EYSEGNIDMS-EASDQNGI 1365 (1378)
Q Consensus 1322 s~~~~e~sd~d~~~~~d~~~~e~~~~-~~~~~d~~m~-~~~d~n~~ 1365 (1378)
++.+=+.|.|.+|+++|||+++++++ +|+.+|-|-. .|++-|-+
T Consensus 262 n~sv~~~ss~~edD~Dddd~dDdeeN~ddd~~d~d~e~~~v~dN~~ 307 (514)
T KOG3130|consen 262 NCSVNGSSSYHEDDDDDDDDDDDEENIDDDDGDNDHEALGVGDNSI 307 (514)
T ss_pred cccccCCCCccccccccccccchhhcccccccccchhhhccCCCcC
Confidence 33444444444444444443333333 4455554333 37766665
No 96
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.90 E-value=1.1e+03 Score=33.33 Aligned_cols=15 Identities=13% Similarity=0.501 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHhcC
Q 000640 346 SAAENAFAWMREKGL 360 (1378)
Q Consensus 346 ~a~~~~~~~m~~~G~ 360 (1378)
..|.+.++-+++++|
T Consensus 652 e~aq~cI~fl~~~nL 666 (1293)
T KOG0996|consen 652 ETAQECINFLKKNNL 666 (1293)
T ss_pred HHHHHHHHHHHHcCC
Confidence 445668888999883
No 97
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=37.34 E-value=7.1e+02 Score=28.85 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=6.9
Q ss_pred CCCCChhhHHhH
Q 000640 186 PWSDSEENVGNL 197 (1378)
Q Consensus 186 p~~vp~e~vgdL 197 (1378)
+|++|++.-..+
T Consensus 183 a~~l~~~~~~~~ 194 (250)
T PRK14474 183 SFELSQDLRAQI 194 (250)
T ss_pred CCCCCHHHHHHH
Confidence 566677754333
No 98
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.23 E-value=1.3e+03 Score=34.46 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=10.0
Q ss_pred hhhHHHHHHHhhccccccccC
Q 000640 1102 KTTAAVALRLLELDASIMYVK 1122 (1378)
Q Consensus 1102 ~TtsAvaLrl~~LDa~I~y~~ 1122 (1378)
.++++|=-||-.|-+.+.=..
T Consensus 1801 ~~i~~Learir~LE~~l~~E~ 1821 (1930)
T KOG0161|consen 1801 KQIAKLEARIRELESELEGEQ 1821 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 344455555555554444333
No 99
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=37.15 E-value=19 Score=43.77 Aligned_cols=42 Identities=26% Similarity=0.678 Sum_probs=30.0
Q ss_pred HHHHHhhhcccccchhhcchhhhhhhhcccchhhhccccc-ccCCCCccc
Q 000640 922 QWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLC-EDAHCPSCH 970 (1378)
Q Consensus 922 ~kWmw~~~~~~~~l~a~k~Gkk~~~~~l~~c~~c~~~y~~-~e~hc~~cH 970 (1378)
..|+|...+- ..+. -...+-+..|..||-+.-- ++-+|++||
T Consensus 200 ~~~lwe~~~p-q~~~------~~~~~~~~~C~~C~~~~~~~~~~~CpRC~ 242 (418)
T COG2995 200 RRWLWERFYP-QTLA------TGAREGLRSCLCCHYILPHDAEPRCPRCG 242 (418)
T ss_pred HHHHHHhhcc-ccCC------CCCcccceecccccccCCHhhCCCCCCCC
Confidence 4899997663 1111 3455667788999985544 899999999
No 100
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=36.13 E-value=22 Score=43.74 Aligned_cols=6 Identities=17% Similarity=0.673 Sum_probs=3.1
Q ss_pred hhhccc
Q 000640 1270 EEWGVG 1275 (1378)
Q Consensus 1270 e~W~~e 1275 (1378)
++|-..
T Consensus 13 ddWi~~ 18 (458)
T PF10446_consen 13 DDWIRQ 18 (458)
T ss_pred hhhhhc
Confidence 556444
No 101
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=36.09 E-value=25 Score=43.08 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=19.8
Q ss_pred hcccchhhhccc-ccccCCCCccccccC
Q 000640 948 LLVICDVCLDSY-LCEDAHCPSCHRTFG 974 (1378)
Q Consensus 948 ~l~~c~~c~~~y-~~~e~hc~~cH~tf~ 974 (1378)
-+..|+.|+-+. -....||++||.+..
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L~ 241 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPLY 241 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCccc
Confidence 356699999843 355679999997763
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.98 E-value=1.6e+03 Score=32.64 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=5.4
Q ss_pred HHHHHHHHh
Q 000640 455 AAARKKIRI 463 (1378)
Q Consensus 455 ~~a~~~i~~ 463 (1378)
.+|++.|..
T Consensus 719 ~~A~~ai~~ 727 (1486)
T PRK04863 719 SDAAEQLAG 727 (1486)
T ss_pred HHHHHHHHh
Confidence 456667763
No 103
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=35.74 E-value=23 Score=36.47 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=24.7
Q ss_pred chhhhcccccccCCCCccccccCC-CCCC
Q 000640 952 CDVCLDSYLCEDAHCPSCHRTFGA-VDKS 979 (1378)
Q Consensus 952 c~~c~~~y~~~e~hc~~cH~tf~~-~dl~ 979 (1378)
|+.|.+....-.-+|+.|+++++. |.+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G~F~l~ 29 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEGEFELP 29 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEeeeccc
Confidence 999999999999999999999984 5554
No 104
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=35.50 E-value=6.5e+02 Score=27.87 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhccC
Q 000640 124 KESMDLIEDEQLELMDLAAASKG 146 (1378)
Q Consensus 124 re~a~l~edE~lEl~el~a~sk~ 146 (1378)
.++...|..|-|+-.=..+..||
T Consensus 134 e~sk~FIT~ENLd~~IeeALdnp 156 (170)
T PF14943_consen 134 EESKNFITRENLDAAIEEALDNP 156 (170)
T ss_pred HHhcCcCCHHhHHHHHHHHHcCC
Confidence 44555677776665544444443
No 105
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=35.42 E-value=5.1e+02 Score=30.99 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.9
Q ss_pred ChhhhhccccccCC
Q 000640 154 DLETLQNLDSFRDS 167 (1378)
Q Consensus 154 d~etlqnlds~Rd~ 167 (1378)
.+++|++...|.+.
T Consensus 228 v~~~L~~~G~f~dp 241 (291)
T PF06098_consen 228 VLDSLEDSGYFYDP 241 (291)
T ss_pred HHHHHHHCCCCCCh
Confidence 34556666666554
No 106
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=34.32 E-value=6.5e+02 Score=27.46 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 000640 105 KQAAKRKVAIEKATAR 120 (1378)
Q Consensus 105 KEe~k~k~~~Ek~~~r 120 (1378)
++.+++..+.|++.+.
T Consensus 102 ~~~A~~~Ie~Ek~~Al 117 (154)
T PRK06568 102 KSDAIQLIQNQKSTAS 117 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 107
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=33.50 E-value=44 Score=44.58 Aligned_cols=8 Identities=0% Similarity=0.061 Sum_probs=3.4
Q ss_pred cccccCcc
Q 000640 1247 FQGQMGHM 1254 (1378)
Q Consensus 1247 llg~~~~~ 1254 (1378)
+|-.|++.
T Consensus 254 ~vrel~fd 261 (840)
T PF04147_consen 254 LVRELAFD 261 (840)
T ss_pred HHHHhccc
Confidence 44444443
No 108
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=24 Score=47.68 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.7
Q ss_pred chhHHHHHH
Q 000640 617 GNSIRAVLE 625 (1378)
Q Consensus 617 sssVR~~Id 625 (1378)
+..+|.+|+
T Consensus 938 ad~~~QfLd 946 (3015)
T KOG0943|consen 938 ADACRQFLD 946 (3015)
T ss_pred HHHHHHHHH
Confidence 344565554
No 109
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.61 E-value=17 Score=30.15 Aligned_cols=25 Identities=28% Similarity=0.869 Sum_probs=16.8
Q ss_pred cccchhhhcccccccC---------CCCcccccc
Q 000640 949 LVICDVCLDSYLCEDA---------HCPSCHRTF 973 (1378)
Q Consensus 949 l~~c~~c~~~y~~~e~---------hc~~cH~tf 973 (1378)
..+|+.|+-.|--++. .|+.|..+|
T Consensus 2 ~i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 3567777777766654 677777665
No 110
>PF09736 Bud13: Pre-mRNA-splicing factor of RES complex; InterPro: IPR018609 Bud site selection protein 13, also known as pre-mRNA-splicing factor CWC26, belongs to the pre-mRNA retention and splicing (RES) complex. May also be involved in positioning the proximal bud pole signal [, , ]. The presence of RES subunit homologues in numerous eukaryotes suggests that its function is evolutionarily conserved [].
Probab=30.63 E-value=4.2e+02 Score=28.49 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHhccCCcc
Q 000640 128 DLIEDEQLELMDLAAASKGLSS 149 (1378)
Q Consensus 128 ~l~edE~lEl~el~a~sk~l~S 149 (1378)
.-.+|++|+-+.-...-.+.|-
T Consensus 66 R~~dD~~~~~~lk~~~r~~DPm 87 (145)
T PF09736_consen 66 RYADDEDLNEELKEQERWDDPM 87 (145)
T ss_pred chhhhHHHHHHHHhcccccCcH
Confidence 3467777775544444444444
No 111
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=30.61 E-value=8.9e+02 Score=27.96 Aligned_cols=8 Identities=50% Similarity=0.455 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000640 109 KRKVAIEK 116 (1378)
Q Consensus 109 k~k~~~Ek 116 (1378)
|+++.+++
T Consensus 199 Kkk~k~ek 206 (217)
T PF10147_consen 199 KKKEKEEK 206 (217)
T ss_pred HHHHHHHH
Confidence 33333333
No 112
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.54 E-value=1.1e+03 Score=28.76 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 000640 235 EIHLALLKS 243 (1378)
Q Consensus 235 EIH~aLLk~ 243 (1378)
..+.+|+-+
T Consensus 292 ~~~RaL~EA 300 (309)
T TIGR00570 292 ACERALQEA 300 (309)
T ss_pred HHHHHHHHH
Confidence 344444433
No 113
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.56 E-value=26 Score=35.72 Aligned_cols=24 Identities=25% Similarity=0.722 Sum_probs=13.2
Q ss_pred cchhhhcccc---cccCCCCccccccC
Q 000640 951 ICDVCLDSYL---CEDAHCPSCHRTFG 974 (1378)
Q Consensus 951 ~c~~c~~~y~---~~e~hc~~cH~tf~ 974 (1378)
+|+.|...|. ++-.+||.|..+|.
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~ 37 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFP 37 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccC
Confidence 4566655443 34555666666554
No 114
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=29.47 E-value=32 Score=43.39 Aligned_cols=9 Identities=33% Similarity=0.213 Sum_probs=3.5
Q ss_pred CCCCCcccc
Q 000640 1140 IPSRYLPLK 1148 (1378)
Q Consensus 1140 lpsr~~~~K 1148 (1378)
++|-+.|+|
T Consensus 25 ~FS~vGPik 33 (678)
T KOG0127|consen 25 FFSYVGPIK 33 (678)
T ss_pred hhhcccCcc
Confidence 333333333
No 115
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=28.86 E-value=62 Score=34.07 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhhhhccccCCCCCCch---hhHHHhhccccchhhcccCcceeeccCcCCChhhHHHHH
Q 000640 378 AAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPE---ASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAIL 454 (1378)
Q Consensus 378 ~~f~vls~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e---~~i~~~ls~D~~Lferiapsty~lr~~~r~dp~~~e~~~ 454 (1378)
.||.+|... .+-|+..+|...||+.... +-+... +-+|.-|.-|. -|..+--++|+||.-|-.|.-+ +.|.
T Consensus 8 vAy~iL~~~-~~~m~f~dL~~ev~~~~~~---s~e~~~~~iaq~YtdLn~DG-RFi~lG~n~WgLr~w~p~d~i~-e~~~ 81 (129)
T PRK02363 8 VAYEILKEK-KEPMSFYDLVNEIQKYLGK---SDEEIRERIAQFYTDLNLDG-RFISLGDNKWGLRSWYPVDEID-EEII 81 (129)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccC-CeeEcCCCceecccccChhhhh-hhhh
Confidence 588999887 6789999999999887542 111222 33466777888 7999999999999977776633 4444
Q ss_pred HHH
Q 000640 455 AAA 457 (1378)
Q Consensus 455 ~~a 457 (1378)
...
T Consensus 82 ~~~ 84 (129)
T PRK02363 82 PLE 84 (129)
T ss_pred cch
Confidence 443
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.82 E-value=1.6e+03 Score=32.30 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred hhhhhhcccchhhhhhcCCCCCHHHHHHHHHHH
Q 000640 277 IEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALS 309 (1378)
Q Consensus 277 v~~a~~WGf~l~~w~~~LdslTWPEILRq~lls 309 (1378)
...+|.| -..|+.++..++|..|++....-
T Consensus 489 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 518 (1353)
T TIGR02680 489 EGARLAW---VDAWQAQLRELTILAVDDQPGAL 518 (1353)
T ss_pred HHHHHHH---hhhHHhhhccchhhhhcchhhhh
Confidence 3445556 56788999999999987766553
No 117
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=28.64 E-value=49 Score=38.02 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=20.0
Q ss_pred cccccccccCCcccccccCCccccccCCCCCCCCCCcccCCc
Q 000640 1289 NSAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRDVMEVSD 1330 (1378)
Q Consensus 1289 ~~~e~e~~ddn~q~~eYd~~~~~~gfng~~~~~s~~~~e~sd 1330 (1378)
|+..+|+-||+-|++ |-+++|- |-+-|++-|
T Consensus 43 n~vSSEEtdD~kQet----------lPsksne-Shd~~DD~d 73 (287)
T smart00017 43 NAVSSEETDDFKQET----------LPSKSNE-SHEHTDDLD 73 (287)
T ss_pred ccccccccccccccc----------CCCCCcc-Chhhccccc
Confidence 334445667778888 8888887 555555433
No 118
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.04 E-value=1.6e+03 Score=32.35 Aligned_cols=28 Identities=29% Similarity=0.097 Sum_probs=12.7
Q ss_pred eeccCcCCChhhHHHHHHHHHHHHHhhccCCCCC
Q 000640 438 CVRPAFRKDPADAEAILAAARKKIRIFENGFLGG 471 (1378)
Q Consensus 438 ~lr~~~r~dp~~~e~~~~~a~~~i~~f~~~~~~~ 471 (1378)
.+...-..+|... +-|.|| +...|++|.
T Consensus 607 l~df~e~v~~~~r-a~IEaA-----L~~~GLLDA 634 (1353)
T TIGR02680 607 LVDFADDVPADVR-AGLEAA-----LEAAGLLDA 634 (1353)
T ss_pred heecCCCCCHHHH-HHHHHH-----HHHCCCcce
Confidence 3333344555443 334443 334566664
No 119
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=27.92 E-value=4.7e+02 Score=31.30 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 000640 116 KATARKMAKE 125 (1378)
Q Consensus 116 k~~~rr~are 125 (1378)
|-.++..|+.
T Consensus 210 Ki~Ar~~a~~ 219 (291)
T PF06098_consen 210 KIAARAFAQQ 219 (291)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 120
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.74 E-value=49 Score=43.37 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred hhcccccc--cccccccccccccccccccCCcccccccCC-ccccccCCCCCCCCCC---cccCCccccc---ccCCccc
Q 000640 1271 EWGVGKER--MINMEDAENSNSAEAVDSDDNVQAVEYEQG-NWEVGFNGATNGWNRD---VMEVSDEDED---AFGDDAG 1341 (1378)
Q Consensus 1271 ~W~~e~~~--~~~~~~~eNs~~~e~e~~ddn~q~~eYd~~-~~~~gfng~~~~~s~~---~~e~sd~d~~---~~~d~~~ 1341 (1378)
+.|.+.+. ...|-.++..+..|.+++| +|+.| -=.+|+-+- +.| ++++.+|++| .++|++.
T Consensus 859 e~~~e~~~k~~~d~~~D~d~~~deddd~d------~~s~~~~e~~~~Ed~----dEdi~~~~D~~~D~~d~~d~~e~e~d 928 (988)
T KOG2038|consen 859 EFGAEKDDKNKKDMTSDDDVDADEDDDED------ENSLGSEEDGGEEDD----DEDIGDSDDDEDDTSDAEDDFEDEDD 928 (988)
T ss_pred hcCchhhchhhhccccccccccccccccc------hhcccCccccccccc----chhccccccccccchhhccccccccc
Q ss_pred hhhhcccccccCcccCcCCCC
Q 000640 1342 IEEAVDEYSEGNIDMSEASDQ 1362 (1378)
Q Consensus 1342 ~e~~~~~~~~~d~~m~~~~d~ 1362 (1378)
.+.+.+++.+|-.+..|++++
T Consensus 929 ~~~~~e~~~~~g~d~~d~~~~ 949 (988)
T KOG2038|consen 929 DEVDDEDGGEGGKDDADISGD 949 (988)
T ss_pred cccccccccccCccccccccc
No 121
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=9.6e+02 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHhhhhhHHHHHHHHHHHHhccCCcc
Q 000640 124 KESMDLIEDEQLELMDLAAASKGLSS 149 (1378)
Q Consensus 124 re~a~l~edE~lEl~el~a~sk~l~S 149 (1378)
.++...|..|-||.+=+.+..+|..-
T Consensus 169 ersknfITReNLea~Ie~AL~~p~~y 194 (227)
T KOG4691|consen 169 ERSKNFITRENLEARIEAALDSPKNY 194 (227)
T ss_pred HHHhhhhhHHhHHHHHHHHHcCcccc
Confidence 34677899999998888877766543
No 122
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=27.30 E-value=40 Score=44.48 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 000640 1029 ALEASWTDE 1037 (1378)
Q Consensus 1029 AL~~~W~~~ 1037 (1378)
.++..|...
T Consensus 507 ~~~~~~~~~ 515 (784)
T PF04931_consen 507 EQQQAWKTL 515 (784)
T ss_pred HHHHHHHHH
Confidence 444444433
No 123
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.20 E-value=1.4e+02 Score=33.61 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000640 45 MEKHERERRKEEERLMR-ERQREEERSLREQKREMERREKFLQKEYLRAE 93 (1378)
Q Consensus 45 ~Ek~erer~keeEr~er-e~~~EEER~~rE~~rEeeR~eke~~kE~er~E 93 (1378)
.|+.++.|+..||-++| ++.+++||..+..-.|++.++|+.+--.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (197)
T PRK12585 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSD 174 (197)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHhhcc
No 124
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=27.01 E-value=4.6e+02 Score=33.93 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=5.8
Q ss_pred hHHHhhccccch
Q 000640 417 SISVALTRDTKL 428 (1378)
Q Consensus 417 ~i~~~ls~D~~L 428 (1378)
+|.+-.|+|..|
T Consensus 591 ~i~V~rasdP~L 602 (645)
T KOG0681|consen 591 SINVVRASDPVL 602 (645)
T ss_pred ceEEEecCCcch
Confidence 344455555533
No 125
>PRK04863 mukB cell division protein MukB; Provisional
Probab=26.19 E-value=2.3e+03 Score=31.28 Aligned_cols=21 Identities=14% Similarity=0.021 Sum_probs=9.3
Q ss_pred HHHHHHhcCChhhhhhhhhhh
Q 000640 1017 LSAVIEAYIPPEALEASWTDE 1037 (1378)
Q Consensus 1017 ~L~~iEa~ip~eAL~~~W~~~ 1037 (1378)
.|-.-|-+=-+|....||..-
T Consensus 1171 ~~~~~~~~~~~e~~~~~~~~~ 1191 (1486)
T PRK04863 1171 VLRLSEDPKRPERKVQFYIAV 1191 (1486)
T ss_pred HHhhccCCCchhHHHhHHHHH
Confidence 333334333444445555544
No 126
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.09 E-value=71 Score=40.36 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=70.4
Q ss_pred hcCCCCCHHHHHHHHHHHhCCCCccccccccccCCCCCCCCCCccchhhhhcccchhhHHHHHHHHhcCCCCccCCCccC
Q 000640 292 QLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLT 371 (1378)
Q Consensus 292 ~~LdslTWPEILRq~llsaG~g~~~~~~~~~~~~~~~~~eg~~~edvi~~~r~g~a~~~~~~~m~~~G~~~~rr~~~rl~ 371 (1378)
+.=|.++=.++|-.|+-.--+|+...+.- .| ..||.+|||- +.|-+-- =.
T Consensus 48 rNk~~i~~~~LL~lff~l~~~~dk~lRkl---ly----------thiv~~Ikn~-------n~~~kn~----------kl 97 (616)
T KOG2229|consen 48 RNKNLIVAEDLLELFFPLLRCGDKNLRKL---LY----------THIVTTIKNI-------NKKHKND----------KL 97 (616)
T ss_pred hccCcCCHHHHHHHHHHHHhcCchhHHHH---HH----------HHHHHHHHHH-------Hhhcccc----------hH
Confidence 34567787888888888877777764332 22 4678887753 2222211 11
Q ss_pred CcchhHHHHHHHhhcCC-CCccHHHHHHHhhhhccccCCCCCCchhhHHHhhccccc
Q 000640 372 PGTVKFAAFHVLSLEGS-KGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTK 427 (1378)
Q Consensus 372 ~gT~K~~~f~vls~~G~-~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~ls~D~~ 427 (1378)
.-.+-...|.+|.-.++ .|.--..+...+-+-+ .|.-++|.+-.+++|||++++
T Consensus 98 nkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~--iW~d~~tV~i~~~acf~~~~k 152 (616)
T KOG2229|consen 98 NKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRN--IWNDSKTVNIITTACFSKVPK 152 (616)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc--ccccchhHHHHHHHHhccCcH
Confidence 24567889999998887 5555555555555554 466999999999999999985
No 127
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.47 E-value=2.1e+03 Score=30.62 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=16.8
Q ss_pred hhhhcccccCCCHHHHHHHHHHHHHHHhcch
Q 000640 588 QGLAEGDYSHLSVEERLNALVALIGIANEGN 618 (1378)
Q Consensus 588 ~~L~~g~Y~~LsieeKL~iL~~Lv~~ll~ss 618 (1378)
.-|.+..=..++.=.++.++..|++.+-...
T Consensus 1115 ~~L~~vsS~G~syLi~~~~~i~l~~~lr~~~ 1145 (1201)
T PF12128_consen 1115 RQLNNVSSHGTSYLILCMFFIALTRMLRGDA 1145 (1201)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 3344444444555566677777766554433
No 128
>PLN02372 violaxanthin de-epoxidase
Probab=24.91 E-value=1e+03 Score=30.04 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000640 10 ARIAREVEANEIRIQKE 26 (1378)
Q Consensus 10 ~r~~re~e~~e~r~rkE 26 (1378)
+|+++..+.-|+-+-||
T Consensus 364 ~~l~~~~e~~e~~i~~e 380 (455)
T PLN02372 364 ERLEKDVEEGEKTIVKE 380 (455)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 129
>PLN02316 synthase/transferase
Probab=24.85 E-value=2.1e+02 Score=39.40 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.0
Q ss_pred hhcCCCCccHHHHHHHhhhhccc
Q 000640 384 SLEGSKGLTVLELADKIQKSGLR 406 (1378)
Q Consensus 384 s~~G~~gl~v~e~a~~~q~~~l~ 406 (1378)
+..|-=|-=|..|++.+++.|..
T Consensus 601 aKvGGLgDVV~sLp~ALa~~Gh~ 623 (1036)
T PLN02316 601 AKVGGLGDVVTSLSRAVQDLNHN 623 (1036)
T ss_pred CCcCcHHHHHHHHHHHHHHcCCE
Confidence 34455555678899998888853
No 130
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=24.45 E-value=25 Score=44.74 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=2.2
Q ss_pred ccCCCCchhh
Q 000640 1095 PILPWIPKTT 1104 (1378)
Q Consensus 1095 ~~lpw~p~Tt 1104 (1378)
..|.|.+.+-
T Consensus 457 itlSWk~~~~ 466 (556)
T PF05918_consen 457 ITLSWKEAKK 466 (556)
T ss_dssp ---TTS----
T ss_pred cceeeeeccc
Confidence 4467777665
No 131
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=24.27 E-value=9.5e+02 Score=26.20 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 000640 21 IRIQKELE 28 (1378)
Q Consensus 21 ~r~rkE~E 28 (1378)
.+++.+++
T Consensus 38 ~~I~~~Ld 45 (154)
T PRK06568 38 LEVQEKVL 45 (154)
T ss_pred HHHHHHHH
Confidence 33444443
No 132
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=24.22 E-value=1e+03 Score=26.45 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHHHHHhccCCccccccChhhhhcccccc
Q 000640 136 ELMDLAAASKGLSSIIHLDLETLQNLDSFR 165 (1378)
Q Consensus 136 El~el~a~sk~l~S~~~Ld~etlqnlds~R 165 (1378)
+...+...|+.++-..+||.-=...|+++.
T Consensus 128 ~V~~~~e~sk~FIT~ENLd~~IeeALdnp~ 157 (170)
T PF14943_consen 128 EVRQLKEESKNFITRENLDAAIEEALDNPV 157 (170)
T ss_pred HHHHHHHHhcCcCCHHhHHHHHHHHHcCCc
Confidence 445566677777777766544444444443
No 133
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=23.82 E-value=1.1e+03 Score=27.55 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=18.5
Q ss_pred HhccCCccccccChhhhhccccccCC
Q 000640 142 AASKGLSSIIHLDLETLQNLDSFRDS 167 (1378)
Q Consensus 142 a~sk~l~S~~~Ld~etlqnlds~Rd~ 167 (1378)
.-+.|++...-|..++|++.=-|+++
T Consensus 202 ~hssgl~~spyL~A~~l~~~M~~~pp 227 (265)
T PF06409_consen 202 HHSSGLPYSPYLMAEALQREMGHQPP 227 (265)
T ss_pred ccCCCCcCchHHhHHHHHHhhCCCCc
Confidence 34568888888888888775555444
No 134
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.78 E-value=39 Score=35.57 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.3
Q ss_pred CcccCc
Q 000640 1353 NIDMSE 1358 (1378)
Q Consensus 1353 d~~m~~ 1358 (1378)
|.+|++
T Consensus 117 DdDv~D 122 (129)
T TIGR02300 117 DIDDED 122 (129)
T ss_pred cccccc
Confidence 333443
No 135
>PRK11637 AmiB activator; Provisional
Probab=22.78 E-value=1.5e+03 Score=27.94 Aligned_cols=6 Identities=50% Similarity=1.437 Sum_probs=2.2
Q ss_pred CCCCCH
Q 000640 294 LNPLTW 299 (1378)
Q Consensus 294 LdslTW 299 (1378)
+||+.|
T Consensus 420 vnP~~~ 425 (428)
T PRK11637 420 VNPQPW 425 (428)
T ss_pred eChHHH
Confidence 333333
No 136
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.33 E-value=1.2e+03 Score=26.70 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000640 25 KELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRME 104 (1378)
Q Consensus 25 kE~Ekqe~~rrk~EEr~rkE~Ek~erer~keeEr~ere~~~EEER~~rE~~rEeeR~eke~~kE~er~Ek~r~kEE~rre 104 (1378)
.++++.=...-..-++.+++.++...+.+..-+.-..+.+.--+.-+++.+++.++.-.+.+.+.++..... +.+.+.+
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a-~~~ie~E 113 (246)
T TIGR03321 35 DAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKW-QEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHH
Q 000640 105 KQAAKRKVAIE 115 (1378)
Q Consensus 105 KEe~k~k~~~E 115 (1378)
++.+....+.+
T Consensus 114 ~~~a~~~l~~e 124 (246)
T TIGR03321 114 QAALSDELRRR 124 (246)
T ss_pred HHHHHHHHHHH
No 137
>COG3909 Cytochrome c556 [Energy production and conversion]
Probab=21.30 E-value=19 Score=38.20 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=8.0
Q ss_pred HHHHHhHHHHH
Q 000640 912 KAALERFQDFQ 922 (1378)
Q Consensus 912 ~~~~~R~q~f~ 922 (1378)
-..|.+.++|.
T Consensus 91 p~IWe~~~~FK 101 (147)
T COG3909 91 PAIWEDMADFK 101 (147)
T ss_pred HHHHHhHHHHH
Confidence 35788888886
No 138
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.73 E-value=3.1e+03 Score=30.89 Aligned_cols=14 Identities=21% Similarity=0.057 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 000640 1009 LGIRLLKPLSAVIE 1022 (1378)
Q Consensus 1009 ~~ir~LK~~L~~iE 1022 (1378)
..|+.+|.+|..-|
T Consensus 1864 ~k~~~~krQleeaE 1877 (1930)
T KOG0161|consen 1864 AKIKQYKRQLEEAE 1877 (1930)
T ss_pred HHHHHHHHhHHHHH
Confidence 34455555554443
No 139
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.54 E-value=65 Score=35.43 Aligned_cols=30 Identities=20% Similarity=0.647 Sum_probs=19.1
Q ss_pred hcccchhhhcccccc-----cCCCCccccccCCCC
Q 000640 948 LLVICDVCLDSYLCE-----DAHCPSCHRTFGAVD 977 (1378)
Q Consensus 948 ~l~~c~~c~~~y~~~-----e~hc~~cH~tf~~~d 977 (1378)
++-+|+.|+-.|-.+ +-+||.|..+..-+|
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred CEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecc
Confidence 455566666666443 568888886666544
No 140
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=20.37 E-value=1.8e+03 Score=27.95 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=6.6
Q ss_pred cccccCCCCCCCC
Q 000640 161 LDSFRDSLSVFPP 173 (1378)
Q Consensus 161 lds~Rd~Lp~FPp 173 (1378)
-..+.+.|.||-.
T Consensus 480 ntdyapkltpyer 492 (672)
T KOG4722|consen 480 NTDYAPKLTPYER 492 (672)
T ss_pred ccccccccChHHh
Confidence 4445555555543
No 141
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=20.07 E-value=34 Score=28.05 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=17.1
Q ss_pred hhhcccchhhhcccccccCCCCccc
Q 000640 946 RQLLVICDVCLDSYLCEDAHCPSCH 970 (1378)
Q Consensus 946 ~~~l~~c~~c~~~y~~~e~hc~~cH 970 (1378)
.=++.+|..|..++|.--..|+.||
T Consensus 8 ~l~~~rC~~Cg~~~~pPr~~Cp~C~ 32 (37)
T PF12172_consen 8 RLLGQRCRDCGRVQFPPRPVCPHCG 32 (37)
T ss_dssp -EEEEE-TTT--EEES--SEETTTT
T ss_pred EEEEEEcCCCCCEecCCCcCCCCcC
Confidence 3457899999999999999999999
Done!