Query 000640
Match_columns 1378
No_of_seqs 427 out of 589
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 16:25:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000640.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_413-416//hhsearch_pdb/000640hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 35.0 7.1 13 640-652 307-319 (575)
2 3oja_A Leucine-rich immune mol 1.0 1 1 24.8 14.7 16 598-613 324-339 (487)
3 1f5n_A Interferon-induced guan 1.0 1 1 22.3 13.8 20 597-616 287-306 (592)
4 1ij5_A Plasmodial specific LAV 1.0 1 1 21.8 8.6 31 375-405 254-285 (323)
5 2y9y_B IOC3, ISWI one complex 1.0 1 1 19.8 8.4 40 190-229 50-91 (624)
6 1b34_A Protein (small nuclear 1.0 1 1 19.6 0.0 13 1113-1125 39-51 (119)
7 2zuo_A MVP, major vault protei 1.0 1 1 18.9 21.6 32 794-825 525-569 (861)
8 2ct0_A Non-SMC element 1 homol 1.0 1 1 16.9 0.9 43 940-995 6-48 (74)
9 1l4a_E Synaphin A; snare, snar 1.0 1 1 16.9 3.4 47 44-91 7-53 (79)
10 3rk3_E Complexin-1; snare prot 1.0 1 1 16.6 6.7 39 52-91 11-49 (63)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=35.04 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999867555554
Q 000640 640 AEAQLDKSRLKEE 652 (1378)
Q Consensus 640 ~Ea~ldkrr~keE 652 (1378)
+.|+++|-+++.|
T Consensus 307 ~~a~e~~~~~~~e 319 (575)
T 2i1j_A 307 AQAREEKLAKQAQ 319 (575)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9988888888999
No 2
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=24.77 Aligned_cols=16 Identities=0% Similarity=-0.384 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 8999999999999998
Q 000640 598 LSVEERLNALVALIGI 613 (1378)
Q Consensus 598 Lsve~KL~iL~~Lv~~ 613 (1378)
-.+...+.+|.-+.|.
T Consensus 324 ~eF~~Eve~L~~i~Hr 339 (487)
T 3oja_A 324 ETERLECERENQARQR 339 (487)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999987515210
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=1.00 E-value=1 Score=22.29 Aligned_cols=20 Identities=0% Similarity=0.042 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHHHHHHHC
Q ss_conf 78999999999999998702
Q 000640 597 HLSVEERLNALVALIGIANE 616 (1378)
Q Consensus 597 ~Lsve~KL~iL~~Lv~~ll~ 616 (1378)
-++...=...+..+|+.+..
T Consensus 287 ~vtG~~L~~l~~~yv~ain~ 306 (592)
T 1f5n_A 287 QVNGPRLESLVLTYVNAISS 306 (592)
T ss_dssp ECBHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 23599999999999999847
No 4
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=1.00 E-value=1 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHH-HHHCC
Q ss_conf 35789999844099985279987786-54044
Q 000640 375 VKFAAFHVLSLEGSKGLTVLELADKI-QKSGL 405 (1378)
Q Consensus 375 ~K~~~f~vl~~~G~~gl~v~e~a~~~-q~~~l 405 (1378)
.-..+|.++...|++-++..|+..-+ ...|.
T Consensus 254 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~ 285 (323)
T 1ij5_A 254 VLRILYAFADFDKSGQLSKEEVQKVLEDAHIP 285 (323)
T ss_dssp HHHHHHHHTCSSSCSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999998689998974599999999987289
No 5
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Probab=1.00 E-value=1 Score=19.79 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHCCC
Q ss_conf 9356875778999998622001--657779889999860268
Q 000640 190 SEENVGNLLMVWRFFITFADVL--GLWPFTLDEFVQAFHDHE 229 (1378)
Q Consensus 190 p~e~vgdLLmVweFL~tFs~~L--~LsPFTLDDf~qAL~~~d 229 (1378)
|...-+|++.|..|++-|..+| .|..|++-||+..|..+.
T Consensus 50 ~~PYA~DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p 91 (624)
T 2y9y_B 50 PVPYAGDIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYP 91 (624)
T ss_dssp ECTTHHHHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCC
T ss_conf 588775348999999998763567666758276631556788
No 6
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=1.00 E-value=1 Score=19.63 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=7.1
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 1022111358999
Q 000640 1113 ELDASIMYVKPEK 1125 (1378)
Q Consensus 1113 ~LDa~I~y~~~~k 1125 (1378)
.|+.++-|....+
T Consensus 39 vL~d~~e~~~~~~ 51 (119)
T 1b34_A 39 HLKAVKMTLKNRE 51 (119)
T ss_dssp EEEEEEEECTTSC
T ss_pred EECCEEEECCCCC
T ss_conf 9610799657983
No 7
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=1.00 E-value=1 Score=18.87 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=16.8
Q ss_pred CEEEEEECCC---------CEEEEC----CHHHHHHHHHHCCCCC
Q ss_conf 5169981486---------179966----9999999998204232
Q 000640 794 GRIFVELHDG---------TWRLID----TVEAFDALLSSLDARG 825 (1378)
Q Consensus 794 grifVE~~dg---------~W~~y~----t~eeLd~Ll~~Ld~RG 825 (1378)
-.|-||+.|- .|.+-- ++++-..|-+.-|--|
T Consensus 525 D~i~vET~DhArL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvG 569 (861)
T 2zuo_A 525 DVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVG 569 (861)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHH
T ss_pred EEEEEEECCCEEEEEEEEEEEEEECCCCCCHHHHHHHCCCCCHHH
T ss_conf 799999747618999999999996368787355666125776378
No 8
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=16.94 Aligned_cols=43 Identities=16% Similarity=0.441 Sum_probs=29.7
Q ss_pred CHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 00122200001210110124563678986656667887776432103343444303
Q 000640 940 NEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKL 995 (1378)
Q Consensus 940 ~Gkk~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~~~dl~~~fs~h~a~c~~K~~~ 995 (1378)
.|.-.|.+.+..|.||++.... ...|+.|. |+|-.| |-.||..
T Consensus 6 ~~~~~y~~~i~~C~IC~~~i~~-g~~C~~C~---------h~fH~~---Ci~kWl~ 48 (74)
T 2ct0_A 6 SGRETYPDAVKICNICHSLLIQ-GQSCETCG---------IRMHLP---CVAKYFQ 48 (74)
T ss_dssp CCCCCCSSSSCBCSSSCCBCSS-SEECSSSC---------CEECHH---HHHHHST
T ss_pred CCHHHCCCCCCCCCCHHHHCCC-CCCCCCCC---------CHHHHH---HHHHHHH
T ss_conf 6200156779839122437026-88638877---------256599---9999998
No 9
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=1.00 E-value=1 Score=16.86 Aligned_cols=47 Identities=28% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999999999999999999999999999999999
Q 000640 44 EMEKHERERRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLR 91 (1378)
Q Consensus 44 E~Ek~erer~kEeEr~ere~~~EEER~~rE~~rEeeR~eke~~kE~er 91 (1378)
+.+....-.++++|+.+..++.|++|.++-++.|.+| ++-+|.-+.+
T Consensus 7 e~e~~~~a~k~~~E~~eAlrqaEE~Rk~Kh~kmE~ER-E~mRq~IRdK 53 (79)
T 1l4a_E 7 EKEGNENAEEEAAAIEEARREAEERRKEKHRKMEEER-EEMRQTIRDK 53 (79)
T ss_dssp -----------------------CHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 5445710534139999999999999999999999999-9999999998
No 10
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=1.00 E-value=1 Score=16.58 Aligned_cols=39 Identities=38% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999
Q 000640 52 RRKEEERLMRERQREEERSLREQKREMERREKFLQKEYLR 91 (1378)
Q Consensus 52 r~kEeEr~ere~~~EEER~~rE~~rEeeR~eke~~kE~er 91 (1378)
.++++|+.+.-++.|++|.++-++.|.+| ++-+|.-+.+
T Consensus 11 ~kke~E~~eAlrq~Ee~Rk~Kh~kME~ER-E~mRQ~IRdK 49 (63)
T 3rk3_E 11 AKKFEEAQEALRQAEEERKAKYAKMEAER-EAVRQGIRDK 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 88899999999999999999999889999-9999999998
Done!