Query 000640
Match_columns 1378
No_of_seqs 427 out of 589
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 16:33:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000640.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_413-416//hhsearch_scop/000640hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa4 g.37.1.1 (A:8-34) GLI- 42.4 3.4 0.00025 15.7 0.7 18 965-987 2-19 (27)
2 d2g7la1 a.4.1.9 (A:16-83) Puta 9.9 29 0.0021 8.8 2.9 54 369-422 3-56 (68)
3 d1ui5a1 a.4.1.9 (A:5-75) A-fac 9.5 31 0.0022 8.7 0.7 49 375-423 10-58 (71)
4 d2oi8a1 a.4.1.9 (A:8-86) Putat 9.2 32 0.0023 8.5 1.5 50 371-420 10-59 (79)
5 d1zk8a1 a.4.1.9 (A:6-77) Trans 8.8 34 0.0025 8.3 1.9 52 370-421 3-54 (72)
6 d1zu1a2 g.37.1.4 (A:74-128) ds 7.8 40 0.0029 7.8 0.1 13 963-975 21-33 (55)
7 d1z0xa1 a.4.1.9 (A:4-71) Trans 6.5 50 0.0037 7.0 2.1 53 370-422 2-55 (68)
8 d1t56a1 a.4.1.9 (A:22-94) Ethr 6.4 52 0.0038 6.9 2.1 30 375-404 8-37 (73)
9 d2j8wa1 a.24.3.2 (A:1-128) Cyt 6.0 44 0.0032 7.5 -0.6 18 942-959 109-126 (128)
10 d1s05a_ a.24.3.2 (A:) Cytochro 5.9 55 0.004 6.7 -0.1 21 942-962 107-127 (129)
No 1
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.37 E-value=3.4 Score=15.71 Aligned_cols=18 Identities=33% Similarity=0.851 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 89866566678877764321033
Q 000640 965 HCPSCHRTFGAVDKSSKFSEHSI 987 (1378)
Q Consensus 965 hc~~cH~tf~~~dl~~~fs~h~a 987 (1378)
.|+.||++|.+ +|.+.+-
T Consensus 2 qcp~c~k~f~s-----kyylkvh 19 (27)
T d2dlqa4 2 ECPTCHKKFLS-----KYYLKVH 19 (27)
T ss_dssp CCTTTCCCCSS-----HHHHHHH
T ss_pred CCCCHHHHHHH-----HHHHHHC
T ss_conf 57614788887-----6755310
No 2
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.95 E-value=29 Score=8.84 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 667762357899998440999852799877865404445878788201478753
Q 000640 369 KLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVAL 422 (1378)
Q Consensus 369 rl~~gT~K~~~f~vl~~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~l 422 (1378)
.++--.+--+++.++...|..+++|.+||+...++---.-.--+.-+.++...+
T Consensus 3 ~~tr~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~~K~~L~~~~~ 56 (68)
T d2g7la1 3 ALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVL 56 (68)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 035999999999999984903078999999978287676287759999999999
No 3
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.52 E-value=31 Score=8.65 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC
Q ss_conf 3578999984409998527998778654044458787882014787531
Q 000640 375 VKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALT 423 (1378)
Q Consensus 375 ~K~~~f~vl~~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~ls 423 (1378)
+--+|+.++...|..+++|.+||+...++---...--.+.+.++.+.+-
T Consensus 10 il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~sK~~L~~~~~~ 58 (71)
T d1ui5a1 10 IIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILE 58 (71)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999859462679999998794876999898299999999999
No 4
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.24 E-value=32 Score=8.52 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 77623578999984409998527998778654044458787882014787
Q 000640 371 TPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISV 420 (1378)
Q Consensus 371 ~~gT~K~~~f~vl~~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~ 420 (1378)
+--.+--+++.++...|..++++.+||+...++--....-=..-+.++.+
T Consensus 10 ~r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~~k~~L~~~ 59 (79)
T d2oi8a1 10 VRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITE 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHH
T ss_conf 99999999999999869030679999998679977445516999999999
No 5
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=8.84 E-value=34 Score=8.33 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 6776235789999844099985279987786540444587878820147875
Q 000640 370 LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVA 421 (1378)
Q Consensus 370 l~~gT~K~~~f~vl~~~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~ 421 (1378)
+|.-.+--+++.+++..|..+++|.+||+...++--..-.--+.-+.++...
T Consensus 3 ~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~k~~L~~~~ 54 (72)
T d1zk8a1 3 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNL 54 (72)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
T ss_conf 2399999999999998697756699999995979999989883999999999
No 6
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=7.78 E-value=40 Score=7.79 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6789866566678
Q 000640 963 DAHCPSCHRTFGA 975 (1378)
Q Consensus 963 e~hc~~cH~tf~~ 975 (1378)
++.|+.|++||.+
T Consensus 21 nk~C~lCn~~Fns 33 (55)
T d1zu1a2 21 SKCCPVCNMTFSS 33 (55)
T ss_dssp TTEETTTTEECSS
T ss_pred HHHHHHHHCCCCC
T ss_conf 0234555431688
No 7
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.51 E-value=50 Score=7.04 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 6776235789999844-0999852799877865404445878788201478753
Q 000640 370 LTPGTVKFAAFHVLSL-EGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVAL 422 (1378)
Q Consensus 370 l~~gT~K~~~f~vl~~-~G~~gl~v~e~a~~~q~~~l~~~~t~~~~e~~i~~~l 422 (1378)
+|--.+-.+|+.++.. .|-.|+++.+||+...++--..-.-=++-+.++...+
T Consensus 2 ~tr~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~ 55 (68)
T d1z0xa1 2 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMA 55 (68)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 589999999999998767923167999999877265689996299999999999
No 8
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.37 E-value=52 Score=6.95 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 357899998440999852799877865404
Q 000640 375 VKFAAFHVLSLEGSKGLTVLELADKIQKSG 404 (1378)
Q Consensus 375 ~K~~~f~vl~~~G~~gl~v~e~a~~~q~~~ 404 (1378)
+--+|++++...|-.+++|.+||+...++-
T Consensus 8 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 37 (73)
T d1t56a1 8 ILATAENLLEDRPLADISVDDLAKGAGISR 37 (73)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCH
T ss_conf 999999999975915077999999869888
No 9
>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus [TaxId: 28068]}
Probab=5.97 E-value=44 Score=7.50 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=12.4
Q ss_pred HHHHHHHCCCCHHHHCCC
Q ss_conf 122200001210110124
Q 000640 942 KTRCRQLLVICDVCLDSY 959 (1378)
Q Consensus 942 kk~~~~~l~~c~~c~~~y 959 (1378)
+..+..+..+|-.||+.|
T Consensus 109 ~~a~~~lg~tCksCH~~y 126 (128)
T d2j8wa1 109 KAAVGETGGACKGCHDKF 126 (128)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999987799999987
No 10
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=5.93 E-value=55 Score=6.74 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHHHHHCCCCHHHHCCCCCC
Q ss_conf 122200001210110124563
Q 000640 942 KTRCRQLLVICDVCLDSYLCE 962 (1378)
Q Consensus 942 kk~~~~~l~~c~~c~~~y~~~ 962 (1378)
+..+..+..+|-.||+.|-..
T Consensus 107 ~~a~~~vg~tCksCH~~fR~k 127 (129)
T d1s05a_ 107 KAAMQPIGKACGNCHENFRDK 127 (129)
T ss_dssp HHHTTTTTHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999996799998998057
Done!