BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000641
(1377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing protein DDB_G0290503
OS=Dictyostelium discoideum GN=DDB_G0290503 PE=4 SV=1
Length = 1492
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 181/779 (23%), Positives = 342/779 (43%), Gaps = 158/779 (20%)
Query: 470 GAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529
+ S+ N LED I+ E+ E K + +L+ +Q+ E+++N +L+
Sbjct: 237 NLNSTNDSKVNQLLEDNIKRLQESLNEIKDENNDLQSLIDTQKQQ---FEKRINQYQLEI 293
Query: 530 SDSEREVREFSEK-LSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSEL 588
D E E+ E +++ LSQ+ + + +++ + L + N + T+L+L+ N+ + S +
Sbjct: 294 QDKENELNEMNQQSLSQVKSFQQSLQQSQLDLENDKNQFS---TKLQLVNNEIQSLKSIV 350
Query: 589 EEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRI 648
+++L KE +D ++ Q I+ + N++ I
Sbjct: 351 DDKL---KEIQLKDNQLTQLNQQHEID---------------NNKNNQM----------I 382
Query: 649 QELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELT 708
EL + ISK+ + E + ++ S + + E+E + + L++ L ND EL
Sbjct: 383 LELNDNISKISNQLNEKDNKIQELSKQSIDKQKEIENSTSSSDQLQLKL---NDISNELL 439
Query: 709 ESLNAAADEKRKLQDTSNGY---NEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGL 765
E LN KLQD N N KL E EN L N LN E ES +LK L
Sbjct: 440 EKLNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQLIENNESSSDELK---L 496
Query: 766 RETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDS 825
+ + ++L+ +E+L V+ + S + E++ K+ + + N S
Sbjct: 497 KLNQLSDELQEKDEKLLNNQSVINELQSN-----------LNENQNKINELIENNQSSSD 545
Query: 826 EAK----SFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSL----ESTNE 877
E K S+KL+ + ++K E + E K L++ L+ K+ L ES+++
Sbjct: 546 ELKLKLNQLSDKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNESSSD 605
Query: 878 ELQRQVVEA------------NNKA---------------------NNSSSENEL---LV 901
ELQ ++++ NN++ NN SS +EL L+
Sbjct: 606 ELQSKLIQLSDQLQEKDEKLLNNQSIINELQSNLNENQNKINELIENNQSSSDELNSKLI 665
Query: 902 ETNNQLKSK----------VAELQELLDSAISEKEATGQQLASHMN----TVTELTEQHS 947
+ +++LK K + E Q+ LD I + T +L S +N + +L E +
Sbjct: 666 KLSDELKDKNENVRSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEININQLIENNQ 725
Query: 948 RALELHSATEARVKEAEIQLHEAIQRF-TQRDIEANNLNEK---VSVLEGQIKSYEEQAR 1003
+L+ ++++ E + ++++ I+ + D + LNEK +S L+ ++ E
Sbjct: 726 SSLD---ELQSKLNEKQNEINQLIENNQSSSDELQSKLNEKHQEISELQSKLNELIENNE 782
Query: 1004 EASTVAETRKFELEETLL----KLKNLESTV------------------EELQTRSGHFE 1041
+S +++ +L + L KLK+L+S + +ELQ++ +
Sbjct: 783 SSSDELQSKLIQLSDELKEKDEKLKSLDSIIIENQEKLVQLTKSNQDSLDELQSKLNEKQ 842
Query: 1042 RESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101
E L+E N ++ ++LQ+KL+ E + +E +S ++L KL
Sbjct: 843 NEINELIENN----------QSSSNELQSKLNEKQNEINLLIENNQSSS---DELQSKLN 889
Query: 1102 SEVQGLQTQISAIMEENNSLNETYQN---AKNELQSVISQLEAQLNEKKATEETFKSEI 1157
+ Q + S + E+ N +NE +N + +ELQS + QL QL EK+ ++F+S I
Sbjct: 890 EKHQEINELQSKLNEKQNKINELVENNESSSDELQSKLIQLSDQLQEKENQLKSFESSI 948
>sp|P55937|GOGA3_MOUSE Golgin subfamily A member 3 OS=Mus musculus GN=Golga3 PE=1 SV=3
Length = 1487
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 162/662 (24%), Positives = 292/662 (44%), Gaps = 110/662 (16%)
Query: 678 ELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAEN 737
EL + LE Q S E A+ +++ L +L +A +K +L + E E
Sbjct: 745 ELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSG 804
Query: 738 LLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLE----QATS 793
LLE LR DL + ++E ++++ A LR+ M+K+K EQ QQ ++E ATS
Sbjct: 805 LLEQLRQDLAVKSNQVEHLQQE--TATLRKQ--MQKVK---EQFVQQKVMVEAYRRDATS 857
Query: 794 RNSELESLHESLMR-ESEMK-LQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA 851
++ + L + R +SEMK L+ L + E K+ + L+ + + +Q+AE
Sbjct: 858 KDQLINELKATKKRLDSEMKELRQELIKL---QGEKKTVEVEHSRLQKDMSLVHQQMAEL 914
Query: 852 AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911
G +++E D I + SL+ E++ L E N LK ++
Sbjct: 915 EGHLQSVQKERDEMEIHLQSLKFDKEQMI------------------ALTEANETLKKQI 956
Query: 912 AELQELLDSAISEKEATGQQLASHM---------------NTVTELTEQHSRALELHSAT 956
ELQ+ AI+E++ ++L S + N V+ L+ + AL AT
Sbjct: 957 EELQQEAKKAITEQKQKMKRLGSDLTSAQKEMKTKHKAYENAVSILSRRLQEALASKEAT 1016
Query: 957 EARVKEAEIQ---------LHEAIQRFTQRDIEANNLNEKVSVLEGQIK------SYE-E 1000
+A + + Q LHE I+ ++E N+ + +LE +++ S E E
Sbjct: 1017 DAELNQLRAQSTGGSSDPVLHEKIRAL---EVELQNVGQSKILLEKELQEVITMTSQELE 1073
Query: 1001 QAREA-----STVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLT 1055
++RE + E+R F K+K LE + ++L H + GL ++N L
Sbjct: 1074 ESREKVLELEDELQESRGFRR-----KIKRLEESNKKLALELEHERGKLTGLGQSNAALR 1128
Query: 1056 EDLALYETKLSDLQAKL-------SATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQ 1108
E ++ ET L+ +A L A + K+E Q+ +A++ +K EV L+
Sbjct: 1129 EHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLK 1188
Query: 1109 TQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKF 1168
Q++A E ++ A EL V +L+A K+ +T ++E++ L+ Q
Sbjct: 1189 EQMAAARIEAGHNRRHFKAATLELSEVKKELQA----KEHLVQTLQAEVDELQIQDG--- 1241
Query: 1169 ALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVI 1228
K +E+ QF+ E+ + + +L+ ++ ++ L ++
Sbjct: 1242 ------KHSQEI-----AQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELD 1290
Query: 1229 QLQRELQI--AQTAIAEQRGADSQKDSERE-AALKSSLE----ELGAKNKEAALLQNKVA 1281
Q +RE+Q Q + EQ+G + +++ +KS LE +L K+ +LQ KV+
Sbjct: 1291 QKEREIQSLKQQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVS 1350
Query: 1282 EL 1283
EL
Sbjct: 1351 EL 1352
>sp|Q9BQS8|FYCO1_HUMAN FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=FYCO1 PE=1 SV=3
Length = 1478
Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 31/256 (12%)
Query: 1054 LTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISA 1113
L E L T ++L ++ A VEK+ E L + + ++D + + E +GL+ Q++
Sbjct: 894 LQEQLHRANTDTAELGIQVCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAG 953
Query: 1114 IMEENNSLNETYQNAKNELQSVISQLEAQLNE----KKATEETFKSEIESLKAQ-AAEKF 1168
+ +E SL E + AK S+ L+AQL + ++ +E E+ +LK Q +AE
Sbjct: 954 LQQEKESLQEKLKAAKAAAGSLPG-LQAQLAQAEQRAQSLQEAAHQELNTLKFQLSAEIM 1012
Query: 1169 ALETRIKELEELLVNVETQFKEE----------VENVKVSAAGKEAELNSKL---EDHAH 1215
++R+K E ++ Q +E+ VE +K + +A++ KL +H
Sbjct: 1013 DYQSRLKNAGEECKSLRGQLEEQGRQLQAAEEAVEKLKAT----QADMGEKLSCTSNHLA 1068
Query: 1216 EV--------KDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELG 1267
E K+ AL E + + Q+EL+ A T I E Q+ + RE + L +L
Sbjct: 1069 ECQAAMLRKDKEGAALREDLERTQKELEKATTKIQEYYNKLCQEVTNRERNDQKMLADLD 1128
Query: 1268 AKNKEAALLQNKVAEL 1283
N+ L+ ++ EL
Sbjct: 1129 DLNRTKKYLEERLIEL 1144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.120 0.292
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,037,575
Number of Sequences: 539616
Number of extensions: 17657684
Number of successful extensions: 207018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 6525
Number of HSP's that attempted gapping in prelim test: 99998
Number of HSP's gapped (non-prelim): 43078
length of query: 1377
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1247
effective length of database: 121,419,379
effective search space: 151409965613
effective search space used: 151409965613
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 68 (30.8 bits)