Query 000642
Match_columns 1377
No_of_seqs 587 out of 3095
Neff 6.8
Searched_HMMs 46136
Date Mon Apr 1 21:13:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0388 SNF2 family DNA-depend 100.0 2E-253 5E-258 2159.0 64.9 1033 1-1212 150-1183(1185)
2 KOG0385 Chromatin remodeling c 100.0 5E-131 1E-135 1160.0 51.0 482 429-1226 159-645 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 3E-131 7E-136 1181.7 44.0 728 425-1223 604-1427(1958)
4 KOG0384 Chromodomain-helicase 100.0 5E-113 1E-117 1048.6 39.6 489 428-1223 361-856 (1373)
5 KOG0386 Chromatin remodeling c 100.0 4E-110 8E-115 1007.0 42.1 598 250-1212 258-867 (1157)
6 KOG0389 SNF2 family DNA-depend 100.0 2E-108 4E-113 973.0 44.1 519 427-1209 388-914 (941)
7 PLN03142 Probable chromatin-re 100.0 5E-102 1E-106 991.7 57.3 480 427-1224 160-641 (1033)
8 KOG0387 Transcription-coupled 100.0 1E-101 3E-106 916.5 40.8 491 426-1223 195-697 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 2.2E-97 5E-102 904.8 44.7 501 427-1224 966-1495(1549)
10 KOG1002 Nucleotide excision re 100.0 3.7E-81 8E-86 705.4 36.5 560 425-1224 173-790 (791)
11 KOG0390 DNA repair protein, SN 100.0 3.8E-78 8.3E-83 739.7 41.8 502 425-1222 227-746 (776)
12 KOG1015 Transcription regulato 100.0 4.3E-77 9.3E-82 707.1 35.4 599 424-1224 656-1317(1567)
13 KOG4439 RNA polymerase II tran 100.0 2.9E-76 6.2E-81 690.8 36.4 523 425-1223 314-899 (901)
14 COG0553 HepA Superfamily II DN 100.0 3.6E-75 7.7E-80 766.2 38.5 505 431-1224 333-864 (866)
15 KOG1016 Predicted DNA helicase 100.0 9.4E-66 2E-70 600.3 36.5 564 424-1228 242-893 (1387)
16 KOG1000 Chromatin remodeling p 100.0 6E-58 1.3E-62 519.6 36.2 425 430-1206 192-626 (689)
17 KOG1001 Helicase-like transcri 100.0 2.8E-59 6.1E-64 578.8 27.0 523 439-1205 135-672 (674)
18 PRK04914 ATP-dependent helicas 100.0 1.7E-56 3.6E-61 572.3 36.7 432 434-1210 150-632 (956)
19 KOG0383 Predicted helicase [Ge 100.0 2.4E-58 5.2E-63 561.6 8.4 295 428-740 284-594 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 9.5E-46 2.1E-50 427.1 26.0 281 440-739 1-299 (299)
21 KOG0298 DEAD box-containing he 100.0 2.1E-42 4.4E-47 428.8 26.0 267 454-740 373-692 (1394)
22 PF13892 DBINO: DNA-binding do 100.0 1.9E-42 4.2E-47 342.6 16.5 137 192-328 2-138 (139)
23 TIGR00603 rad25 DNA repair hel 100.0 4.3E-37 9.2E-42 382.3 36.5 132 1056-1193 480-617 (732)
24 PRK13766 Hef nuclease; Provisi 100.0 8.2E-33 1.8E-37 359.9 37.8 142 1054-1200 345-496 (773)
25 COG1111 MPH1 ERCC4-like helica 99.9 8.2E-24 1.8E-28 245.9 43.6 150 1053-1207 345-505 (542)
26 PHA02558 uvsW UvsW helicase; P 99.9 1.2E-24 2.6E-29 269.3 32.9 127 1056-1183 328-455 (501)
27 COG1061 SSL2 DNA or RNA helica 99.9 5.4E-24 1.2E-28 258.9 31.6 137 1055-1195 267-406 (442)
28 KOG1123 RNA polymerase II tran 99.9 2.7E-24 5.9E-29 245.7 22.2 127 1056-1188 527-658 (776)
29 PTZ00110 helicase; Provisional 99.8 8.1E-19 1.8E-23 219.2 30.8 125 1055-1183 360-484 (545)
30 PRK11776 ATP-dependent RNA hel 99.8 2.2E-18 4.9E-23 212.1 31.5 121 1057-1183 229-349 (460)
31 TIGR00614 recQ_fam ATP-depende 99.8 1.5E-18 3.3E-23 213.8 29.3 105 1071-1177 225-329 (470)
32 PRK01297 ATP-dependent RNA hel 99.8 6E-18 1.3E-22 209.1 29.8 122 1056-1183 321-442 (475)
33 PRK11192 ATP-dependent RNA hel 99.8 9.9E-18 2.1E-22 204.9 31.0 117 1056-1176 231-347 (434)
34 KOG0354 DEAD-box like helicase 99.8 4.4E-17 9.6E-22 200.3 36.0 158 1055-1224 394-565 (746)
35 PRK04837 ATP-dependent RNA hel 99.8 8.3E-18 1.8E-22 204.9 27.9 121 1056-1182 241-361 (423)
36 PRK10590 ATP-dependent RNA hel 99.8 1.7E-17 3.7E-22 203.8 30.6 115 1072-1192 245-359 (456)
37 PRK04537 ATP-dependent RNA hel 99.8 1.8E-17 3.9E-22 207.9 30.5 121 1056-1182 243-363 (572)
38 PLN00206 DEAD-box ATP-dependen 99.8 1.5E-17 3.1E-22 207.2 29.2 123 1057-1183 352-475 (518)
39 TIGR01389 recQ ATP-dependent D 99.8 1.7E-17 3.8E-22 210.1 29.6 114 1059-1176 213-326 (591)
40 PTZ00424 helicase 45; Provisio 99.8 2.6E-17 5.7E-22 199.0 28.4 109 1072-1184 267-375 (401)
41 PRK11057 ATP-dependent DNA hel 99.8 2.9E-17 6.3E-22 207.9 29.6 103 1071-1175 235-337 (607)
42 PRK11634 ATP-dependent RNA hel 99.8 7.1E-17 1.5E-21 203.8 30.7 113 1057-1173 232-344 (629)
43 TIGR00643 recG ATP-dependent D 99.8 2E-16 4.2E-21 201.3 31.2 156 435-605 234-399 (630)
44 PRK11448 hsdR type I restricti 99.8 2.5E-16 5.4E-21 207.9 32.0 106 1072-1180 698-815 (1123)
45 PRK10917 ATP-dependent DNA hel 99.7 4.5E-16 9.8E-21 199.2 29.1 154 435-604 260-421 (681)
46 PLN03137 ATP-dependent DNA hel 99.7 3.4E-16 7.4E-21 200.4 25.3 104 1072-1177 680-783 (1195)
47 TIGR00580 mfd transcription-re 99.7 1.1E-15 2.5E-20 198.5 30.2 109 1071-1183 659-770 (926)
48 PRK13767 ATP-dependent helicas 99.7 2.7E-15 5.9E-20 196.6 31.3 114 1064-1179 276-396 (876)
49 PRK10689 transcription-repair 99.7 3.6E-15 7.7E-20 197.7 31.4 106 1071-1180 808-916 (1147)
50 TIGR03817 DECH_helic helicase/ 99.7 1.2E-14 2.5E-19 187.2 33.2 118 1070-1191 269-394 (742)
51 cd00079 HELICc Helicase superf 99.7 2.7E-16 5.9E-21 158.7 12.3 121 1055-1177 11-131 (131)
52 PRK02362 ski2-like helicase; P 99.6 4.6E-14 9.9E-19 183.1 31.7 146 436-602 23-181 (737)
53 KOG0331 ATP-dependent RNA heli 99.6 3.1E-14 6.7E-19 171.0 27.0 117 1055-1173 323-440 (519)
54 TIGR01587 cas3_core CRISPR-ass 99.6 2.4E-14 5.2E-19 170.7 26.2 135 1057-1197 208-355 (358)
55 PF04851 ResIII: Type III rest 99.6 1.9E-15 4.1E-20 161.5 13.6 160 436-603 3-183 (184)
56 PRK01172 ski2-like helicase; P 99.6 9E-14 2E-18 179.0 29.3 146 436-602 22-179 (674)
57 PRK00254 ski2-like helicase; P 99.6 2.4E-13 5.3E-18 176.0 31.0 147 436-602 23-179 (720)
58 COG0513 SrmB Superfamily II DN 99.6 4.7E-13 1E-17 166.3 27.8 134 1056-1196 259-392 (513)
59 KOG0330 ATP-dependent RNA heli 99.5 1.1E-12 2.3E-17 148.8 24.4 129 1057-1193 287-415 (476)
60 TIGR00348 hsdR type I site-spe 99.5 2.2E-12 4.8E-17 164.9 29.7 157 434-605 236-405 (667)
61 TIGR03714 secA2 accessory Sec 99.5 5E-12 1.1E-16 159.2 30.9 116 1053-1173 405-529 (762)
62 PF00271 Helicase_C: Helicase 99.5 3.1E-14 6.6E-19 131.7 7.7 78 1090-1169 1-78 (78)
63 PRK09200 preprotein translocas 99.5 2.6E-11 5.7E-16 154.2 34.5 131 1053-1192 409-547 (790)
64 smart00487 DEXDc DEAD-like hel 99.5 5.1E-13 1.1E-17 143.2 14.7 163 435-611 7-179 (201)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.5 8.6E-12 1.9E-16 158.6 27.3 104 1070-1179 270-390 (844)
66 cd00046 DEXDc DEAD-like helica 99.4 1.2E-12 2.6E-17 132.0 12.8 136 457-602 2-144 (144)
67 PRK09751 putative ATP-dependen 99.4 2.6E-11 5.7E-16 162.3 28.2 68 1099-1168 304-371 (1490)
68 PHA02653 RNA helicase NPH-II; 99.4 4.8E-11 1E-15 151.0 28.9 110 1071-1186 394-517 (675)
69 KOG0350 DEAD-box ATP-dependent 99.4 1.5E-11 3.2E-16 143.2 21.4 129 1060-1196 419-551 (620)
70 PRK09401 reverse gyrase; Revie 99.4 4E-11 8.7E-16 160.0 27.0 103 1056-1167 315-430 (1176)
71 smart00490 HELICc helicase sup 99.4 1.2E-12 2.6E-17 120.8 8.6 81 1087-1169 2-82 (82)
72 TIGR00963 secA preprotein tran 99.4 6E-11 1.3E-15 148.8 25.6 117 1054-1174 387-510 (745)
73 PRK12898 secA preprotein trans 99.3 4.8E-10 1E-14 140.1 31.7 133 1053-1194 454-594 (656)
74 TIGR03158 cas3_cyano CRISPR-as 99.3 2.4E-10 5.2E-15 136.4 27.2 85 1071-1166 271-357 (357)
75 PRK05580 primosome assembly pr 99.3 3.4E-10 7.4E-15 145.1 28.5 153 436-603 144-305 (679)
76 COG1200 RecG RecG-like helicas 99.3 9.6E-10 2.1E-14 134.7 27.7 159 435-608 261-427 (677)
77 COG0514 RecQ Superfamily II DN 99.2 1.1E-09 2.5E-14 134.4 26.0 108 1072-1183 230-337 (590)
78 TIGR01054 rgy reverse gyrase. 99.2 2.6E-10 5.6E-15 152.6 21.7 128 436-578 78-213 (1171)
79 KOG0348 ATP-dependent RNA heli 99.2 2.1E-09 4.4E-14 126.4 26.1 126 1057-1186 408-557 (708)
80 KOG0335 ATP-dependent RNA heli 99.2 7E-11 1.5E-15 140.2 13.2 121 1055-1177 313-440 (482)
81 TIGR01970 DEAH_box_HrpB ATP-de 99.2 3.3E-09 7.1E-14 137.5 27.2 109 1072-1185 209-338 (819)
82 COG1201 Lhr Lhr-like helicases 99.2 6.5E-09 1.4E-13 132.1 29.1 127 1066-1198 247-375 (814)
83 PRK09694 helicase Cas3; Provis 99.2 5.6E-09 1.2E-13 135.4 28.2 107 1061-1171 550-665 (878)
84 TIGR00595 priA primosomal prot 99.2 2.4E-09 5.3E-14 132.8 23.3 95 1085-1181 271-381 (505)
85 COG1205 Distinct helicase fami 99.1 4.9E-09 1.1E-13 136.4 26.8 135 1056-1194 290-433 (851)
86 KOG4284 DEAD box protein [Tran 99.1 8.3E-10 1.8E-14 131.5 16.9 121 1057-1183 259-379 (980)
87 KOG0345 ATP-dependent RNA heli 99.1 1.2E-08 2.5E-13 119.0 24.6 118 1056-1177 241-360 (567)
88 COG1204 Superfamily II helicas 99.1 3.7E-09 8E-14 135.8 21.8 149 436-601 31-189 (766)
89 PRK13104 secA preprotein trans 99.1 5.7E-08 1.2E-12 124.1 31.9 121 1053-1177 425-583 (896)
90 PF11496 HDA2-3: Class II hist 99.1 1.8E-09 3.8E-14 124.6 16.9 144 1052-1196 92-258 (297)
91 PRK14701 reverse gyrase; Provi 99.1 5.2E-09 1.1E-13 143.0 23.7 103 1059-1171 320-446 (1638)
92 cd00268 DEADc DEAD-box helicas 99.1 1.5E-09 3.3E-14 118.8 14.9 155 436-603 21-185 (203)
93 KOG0338 ATP-dependent RNA heli 99.0 3.4E-08 7.3E-13 115.8 24.7 127 1057-1192 413-540 (691)
94 PF00270 DEAD: DEAD/DEAH box h 99.0 2.3E-09 5E-14 113.4 14.1 157 439-609 2-168 (169)
95 COG4889 Predicted helicase [Ge 99.0 8.8E-09 1.9E-13 125.9 18.2 161 434-603 159-351 (1518)
96 COG4096 HsdR Type I site-speci 99.0 9.8E-10 2.1E-14 136.0 10.4 157 428-604 157-322 (875)
97 PRK12906 secA preprotein trans 99.0 1E-07 2.3E-12 121.1 28.6 118 1053-1174 421-546 (796)
98 PRK11664 ATP-dependent RNA hel 99.0 6.9E-08 1.5E-12 125.6 27.0 111 1071-1186 211-342 (812)
99 KOG0333 U5 snRNP-like RNA heli 99.0 2.6E-09 5.7E-14 125.4 11.5 126 1051-1183 498-624 (673)
100 KOG0343 RNA Helicase [RNA proc 98.9 6.7E-08 1.5E-12 114.2 22.3 134 1056-1196 299-434 (758)
101 KOG0328 Predicted ATP-dependen 98.9 3.5E-09 7.5E-14 116.0 10.4 123 1057-1185 253-375 (400)
102 PRK12904 preprotein translocas 98.9 4.5E-07 9.7E-12 115.9 30.8 121 1053-1177 411-569 (830)
103 PRK13107 preprotein translocas 98.9 4.9E-07 1.1E-11 115.3 30.0 120 1053-1176 430-586 (908)
104 COG1197 Mfd Transcription-repa 98.8 8.9E-07 1.9E-11 114.6 27.9 115 1063-1182 795-912 (1139)
105 COG1202 Superfamily II helicas 98.8 4.2E-07 9.1E-12 108.1 20.6 106 1074-1182 442-552 (830)
106 PRK11131 ATP-dependent RNA hel 98.8 1E-06 2.3E-11 117.1 26.3 108 1072-1186 286-414 (1294)
107 COG4098 comFA Superfamily II D 98.7 4.8E-06 1E-10 94.4 26.3 145 434-603 95-244 (441)
108 COG1203 CRISPR-associated heli 98.7 1.6E-06 3.5E-11 112.6 23.6 127 1070-1201 438-570 (733)
109 PRK05298 excinuclease ABC subu 98.6 4.1E-07 8.9E-12 116.6 16.6 124 1055-1183 429-557 (652)
110 KOG0952 DNA/RNA helicase MER3/ 98.6 5.5E-06 1.2E-10 104.9 25.3 139 450-602 121-285 (1230)
111 PF13872 AAA_34: P-loop contai 98.6 6.4E-07 1.4E-11 102.0 14.4 236 432-696 33-302 (303)
112 KOG0351 ATP-dependent DNA heli 98.6 2E-06 4.4E-11 111.9 20.6 106 1071-1178 484-589 (941)
113 TIGR00631 uvrb excinuclease AB 98.6 5.5E-07 1.2E-11 114.8 15.2 125 1055-1184 425-554 (655)
114 KOG0326 ATP-dependent RNA heli 98.5 1E-07 2.3E-12 106.2 6.8 125 1051-1181 303-427 (459)
115 KOG0336 ATP-dependent RNA heli 98.5 3.3E-07 7.1E-12 105.0 10.8 126 1053-1183 447-572 (629)
116 KOG0332 ATP-dependent RNA heli 98.5 4.6E-07 9.9E-12 103.3 10.8 122 1055-1182 315-442 (477)
117 KOG0341 DEAD-box protein abstr 98.4 8.7E-07 1.9E-11 100.9 10.7 132 1053-1191 405-536 (610)
118 PRK12899 secA preprotein trans 98.4 0.00042 9.1E-09 89.5 35.5 120 1053-1176 549-676 (970)
119 PRK12326 preprotein translocas 98.4 0.0002 4.4E-09 90.1 31.1 121 1053-1177 408-543 (764)
120 KOG0342 ATP-dependent RNA heli 98.4 9E-07 1.9E-11 104.3 9.4 133 1055-1194 314-446 (543)
121 KOG0340 ATP-dependent RNA heli 98.4 1.8E-06 3.9E-11 98.1 10.6 118 1052-1171 233-351 (442)
122 KOG0344 ATP-dependent RNA heli 98.3 2.2E-06 4.7E-11 103.3 11.5 121 1053-1177 370-492 (593)
123 TIGR01407 dinG_rel DnaQ family 98.3 5.1E-05 1.1E-09 100.8 25.5 81 436-519 245-331 (850)
124 PRK12900 secA preprotein trans 98.2 8E-06 1.7E-10 105.0 13.7 129 1042-1174 566-704 (1025)
125 KOG0327 Translation initiation 98.2 3.9E-06 8.5E-11 96.8 9.8 128 1057-1194 252-379 (397)
126 TIGR00596 rad1 DNA repair prot 98.1 0.00046 9.9E-09 89.8 27.4 41 1054-1094 268-317 (814)
127 KOG0339 ATP-dependent RNA heli 98.1 8.2E-06 1.8E-10 96.1 10.0 127 1055-1186 452-578 (731)
128 PRK13103 secA preprotein trans 98.1 0.0014 2.9E-08 84.8 29.4 121 1053-1177 430-587 (913)
129 PRK15483 type III restriction- 98.1 1.5E-05 3.3E-10 103.2 12.1 176 456-640 60-280 (986)
130 KOG0353 ATP-dependent DNA heli 98.0 0.0004 8.6E-09 79.3 20.9 159 436-609 94-267 (695)
131 PF13871 Helicase_C_4: Helicas 98.0 1.5E-05 3.3E-10 90.7 7.9 94 1113-1208 52-153 (278)
132 KOG0951 RNA helicase BRR2, DEA 97.9 0.00045 9.8E-09 89.2 19.0 72 1096-1170 607-689 (1674)
133 PF07652 Flavi_DEAD: Flaviviru 97.8 0.00012 2.6E-09 75.3 10.6 129 455-603 4-137 (148)
134 KOG0334 RNA helicase [RNA proc 97.8 0.00012 2.7E-09 93.8 12.5 124 1054-1182 596-719 (997)
135 KOG1513 Nuclear helicase MOP-3 97.7 0.0015 3.3E-08 80.8 20.0 244 427-697 255-537 (1300)
136 TIGR01967 DEAH_box_HrpA ATP-de 97.7 0.00014 3.1E-09 97.6 11.5 124 1057-1187 263-408 (1283)
137 KOG0949 Predicted helicase, DE 97.6 0.038 8.3E-07 70.8 28.7 161 437-615 512-682 (1330)
138 COG0610 Type I site-specific r 97.5 0.0005 1.1E-08 91.7 13.2 143 454-609 272-420 (962)
139 smart00488 DEXDc2 DEAD-like he 97.5 0.00088 1.9E-08 78.0 13.1 73 436-508 8-84 (289)
140 smart00489 DEXDc3 DEAD-like he 97.5 0.00088 1.9E-08 78.0 13.1 73 436-508 8-84 (289)
141 KOG0953 Mitochondrial RNA heli 97.5 0.00035 7.7E-09 83.9 9.7 120 1056-1179 340-473 (700)
142 PF13086 AAA_11: AAA domain; P 97.5 0.00091 2E-08 74.2 12.5 159 436-605 1-229 (236)
143 KOG0349 Putative DEAD-box RNA 97.4 0.00037 8E-09 81.0 8.5 94 1072-1167 505-601 (725)
144 PRK12901 secA preprotein trans 97.4 0.077 1.7E-06 69.6 29.5 120 1053-1176 609-736 (1112)
145 KOG0347 RNA helicase [RNA proc 97.4 0.00021 4.6E-09 85.5 6.1 101 1073-1176 464-564 (731)
146 COG1198 PriA Primosomal protei 97.3 0.052 1.1E-06 70.0 26.3 155 435-603 197-360 (730)
147 TIGR03117 cas_csf4 CRISPR-asso 97.2 0.0019 4.1E-08 82.0 11.9 78 441-519 2-85 (636)
148 COG4581 Superfamily II RNA hel 97.2 0.0028 6.2E-08 83.1 13.3 156 433-633 116-281 (1041)
149 COG1110 Reverse gyrase [DNA re 97.1 0.003 6.6E-08 81.0 12.3 127 436-576 82-215 (1187)
150 KOG0337 ATP-dependent RNA heli 97.0 0.0012 2.6E-08 77.2 7.4 127 1052-1183 242-368 (529)
151 PF02399 Herpes_ori_bp: Origin 97.0 0.037 8E-07 71.0 20.0 112 1057-1178 268-385 (824)
152 KOG0346 RNA helicase [RNA proc 96.9 0.0035 7.5E-08 73.8 9.9 123 1056-1183 253-410 (569)
153 TIGR00604 rad3 DNA repair heli 96.9 0.0043 9.3E-08 81.1 11.1 72 436-507 10-82 (705)
154 KOG0947 Cytoplasmic exosomal R 96.8 0.004 8.6E-08 79.1 10.0 154 434-634 295-456 (1248)
155 PRK10536 hypothetical protein; 96.7 0.0048 1E-07 69.9 8.9 150 437-606 60-216 (262)
156 CHL00122 secA preprotein trans 96.7 0.58 1.3E-05 61.2 27.5 84 1053-1139 405-489 (870)
157 PF02562 PhoH: PhoH-like prote 96.6 0.0084 1.8E-07 66.1 9.3 154 437-608 5-161 (205)
158 COG0556 UvrB Helicase subunit 96.6 0.031 6.7E-07 67.8 14.4 147 1045-1194 418-570 (663)
159 PRK12903 secA preprotein trans 96.3 0.029 6.3E-07 72.4 12.4 121 1053-1177 407-535 (925)
160 PF13401 AAA_22: AAA domain; P 96.2 0.0078 1.7E-07 60.9 6.1 115 455-602 4-125 (131)
161 KOG0948 Nuclear exosomal RNA h 96.2 0.02 4.3E-07 71.4 10.2 142 432-601 125-275 (1041)
162 KOG1131 RNA polymerase II tran 95.9 0.054 1.2E-06 65.2 11.4 59 436-494 16-74 (755)
163 KOG0352 ATP-dependent DNA heli 95.8 0.019 4.2E-07 67.4 7.2 102 1075-1178 258-359 (641)
164 KOG1802 RNA helicase nonsense 95.8 0.054 1.2E-06 66.9 11.1 74 436-517 410-484 (935)
165 TIGR00376 DNA helicase, putati 95.7 0.073 1.6E-06 68.7 12.9 69 433-507 154-223 (637)
166 COG0553 HepA Superfamily II DN 95.7 0.0084 1.8E-07 80.2 4.6 181 434-624 82-289 (866)
167 PRK08074 bifunctional ATP-depe 95.6 0.055 1.2E-06 72.9 11.8 96 1059-1156 738-839 (928)
168 TIGR02562 cas3_yersinia CRISPR 95.6 3.6 7.7E-05 55.1 27.3 172 438-610 410-642 (1110)
169 PRK14873 primosome assembly pr 95.5 0.047 1E-06 70.4 9.7 125 465-602 170-303 (665)
170 PRK07246 bifunctional ATP-depe 95.3 0.08 1.7E-06 70.3 11.2 88 1060-1152 635-724 (820)
171 KOG1803 DNA helicase [Replicat 95.2 0.055 1.2E-06 66.8 8.6 160 432-604 181-393 (649)
172 PF13604 AAA_30: AAA domain; P 95.0 0.26 5.7E-06 54.2 12.7 129 436-604 1-132 (196)
173 PF07517 SecA_DEAD: SecA DEAD- 95.0 0.22 4.8E-06 57.3 12.3 151 436-611 77-266 (266)
174 COG3587 Restriction endonuclea 95.0 0.1 2.2E-06 66.6 10.2 167 451-640 70-271 (985)
175 KOG0328 Predicted ATP-dependen 94.9 0.091 2E-06 59.1 8.6 164 441-622 54-226 (400)
176 KOG0342 ATP-dependent RNA heli 94.9 0.091 2E-06 63.3 9.0 154 436-602 104-271 (543)
177 KOG0347 RNA helicase [RNA proc 94.9 0.074 1.6E-06 64.6 8.2 134 459-601 223-385 (731)
178 KOG0340 ATP-dependent RNA heli 94.8 0.16 3.5E-06 59.0 10.5 143 454-609 43-200 (442)
179 PF09848 DUF2075: Uncharacteri 94.8 0.079 1.7E-06 63.7 8.5 45 459-504 5-49 (352)
180 PF13307 Helicase_C_2: Helicas 94.4 0.14 3.1E-06 54.7 8.5 79 1069-1153 6-92 (167)
181 cd00009 AAA The AAA+ (ATPases 93.8 0.65 1.4E-05 46.7 11.6 55 445-502 7-63 (151)
182 TIGR01967 DEAH_box_HrpA ATP-de 93.5 0.3 6.5E-06 66.9 10.8 136 452-603 79-222 (1283)
183 COG0556 UvrB Helicase subunit 93.5 0.18 3.8E-06 61.6 7.6 69 440-514 16-86 (663)
184 PRK12902 secA preprotein trans 93.5 12 0.00027 49.5 24.3 85 1053-1140 420-505 (939)
185 TIGR01448 recD_rel helicase, p 93.4 0.64 1.4E-05 61.1 13.4 134 434-604 321-454 (720)
186 KOG4150 Predicted ATP-dependen 93.2 0.2 4.4E-06 60.8 7.5 131 1054-1188 507-645 (1034)
187 KOG0339 ATP-dependent RNA heli 93.1 0.66 1.4E-05 56.2 11.4 129 463-601 268-410 (731)
188 TIGR01447 recD exodeoxyribonuc 93.1 0.85 1.8E-05 58.4 13.4 144 439-604 148-297 (586)
189 PRK11747 dinG ATP-dependent DN 93.0 0.44 9.5E-06 62.4 11.0 91 1058-1153 520-616 (697)
190 KOG0352 ATP-dependent DNA heli 93.0 0.78 1.7E-05 54.5 11.6 166 439-620 23-204 (641)
191 KOG0329 ATP-dependent RNA heli 92.9 0.14 3.1E-06 56.7 5.2 109 459-578 83-199 (387)
192 PRK04296 thymidine kinase; Pro 92.8 0.4 8.7E-06 52.4 8.7 34 458-494 5-38 (190)
193 PRK09112 DNA polymerase III su 92.2 0.71 1.5E-05 55.4 10.4 42 441-482 28-72 (351)
194 COG1199 DinG Rad3-related DNA 91.5 1.1 2.4E-05 58.5 12.0 103 1070-1176 477-612 (654)
195 PRK10875 recD exonuclease V su 91.2 0.98 2.1E-05 58.1 10.8 145 438-604 154-303 (615)
196 KOG0326 ATP-dependent RNA heli 91.2 0.57 1.2E-05 53.8 7.5 128 463-601 130-267 (459)
197 PRK14956 DNA polymerase III su 91.1 0.89 1.9E-05 56.4 9.8 43 441-483 23-68 (484)
198 KOG0950 DNA polymerase theta/e 91.1 2.5 5.4E-05 55.2 13.9 171 437-624 213-408 (1008)
199 KOG0329 ATP-dependent RNA heli 91.0 0.21 4.6E-06 55.4 3.8 80 1053-1171 266-345 (387)
200 smart00382 AAA ATPases associa 90.9 0.61 1.3E-05 46.3 7.0 47 455-504 2-48 (148)
201 KOG0336 ATP-dependent RNA heli 90.9 0.86 1.9E-05 53.9 8.7 142 454-607 256-412 (629)
202 PRK07003 DNA polymerase III su 90.6 0.77 1.7E-05 59.4 8.8 44 441-484 21-67 (830)
203 PLN03025 replication factor C 90.5 2 4.3E-05 50.9 11.8 40 442-481 19-60 (319)
204 TIGR02881 spore_V_K stage V sp 90.4 0.92 2E-05 52.1 8.6 26 456-481 43-68 (261)
205 KOG0341 DEAD-box protein abstr 89.4 0.13 2.9E-06 59.9 0.7 132 462-602 214-367 (610)
206 KOG1132 Helicase of the DEAD s 89.3 1.3 2.8E-05 57.3 9.2 43 431-473 16-58 (945)
207 TIGR03420 DnaA_homol_Hda DnaA 89.3 3.5 7.6E-05 45.9 12.1 45 454-502 37-81 (226)
208 PRK12323 DNA polymerase III su 89.0 2.9 6.4E-05 53.6 12.1 24 459-482 42-65 (700)
209 PRK14961 DNA polymerase III su 89.0 1.3 2.8E-05 53.6 8.8 43 440-482 20-65 (363)
210 PRK14949 DNA polymerase III su 89.0 0.77 1.7E-05 60.5 7.1 25 459-483 42-66 (944)
211 KOG0334 RNA helicase [RNA proc 88.5 1.1 2.4E-05 58.9 8.1 152 436-601 387-555 (997)
212 KOG1805 DNA replication helica 88.5 3.4 7.4E-05 54.1 12.1 175 414-604 644-831 (1100)
213 PRK06526 transposase; Provisio 88.4 1 2.2E-05 51.7 7.0 56 441-507 88-143 (254)
214 KOG0925 mRNA splicing factor A 88.2 1.6 3.6E-05 52.8 8.5 40 451-494 58-97 (699)
215 PRK08074 bifunctional ATP-depe 88.1 2.6 5.5E-05 57.3 11.6 82 436-519 257-344 (928)
216 PHA02533 17 large terminase pr 87.9 2.5 5.4E-05 53.6 10.5 154 435-612 58-220 (534)
217 KOG0337 ATP-dependent RNA heli 87.9 1.5 3.3E-05 52.3 8.0 130 463-602 66-205 (529)
218 PRK11747 dinG ATP-dependent DN 87.1 4 8.8E-05 53.6 12.2 37 542-578 219-260 (697)
219 PRK14958 DNA polymerase III su 87.1 5.7 0.00012 50.3 13.1 44 441-484 21-67 (509)
220 PRK07994 DNA polymerase III su 87.1 2.1 4.7E-05 55.1 9.4 43 441-483 21-66 (647)
221 TIGR00631 uvrb excinuclease AB 87.0 2.1 4.6E-05 55.6 9.4 73 438-516 11-85 (655)
222 PF06862 DUF1253: Protein of u 86.9 6.7 0.00014 48.4 13.0 149 1055-1206 280-436 (442)
223 PRK08084 DNA replication initi 86.9 7 0.00015 44.3 12.5 39 443-481 31-71 (235)
224 COG1875 NYN ribonuclease and A 86.4 2.6 5.6E-05 49.9 8.7 145 437-604 229-389 (436)
225 PHA03333 putative ATPase subun 86.4 2.7 5.8E-05 53.8 9.5 147 441-604 174-333 (752)
226 COG1643 HrpA HrpA-like helicas 86.3 15 0.00032 49.0 16.4 133 448-602 58-205 (845)
227 CHL00181 cbbX CbbX; Provisiona 86.3 2 4.4E-05 50.2 7.9 44 455-498 59-103 (287)
228 TIGR02880 cbbX_cfxQ probable R 86.2 1.9 4.2E-05 50.3 7.8 40 455-494 58-98 (284)
229 PF06733 DEAD_2: DEAD_2; Inte 86.2 0.63 1.4E-05 50.0 3.5 37 542-578 119-159 (174)
230 TIGR02928 orc1/cdc6 family rep 86.0 4 8.7E-05 49.0 10.7 51 430-482 14-67 (365)
231 PRK12402 replication factor C 86.0 4.8 0.0001 47.7 11.2 40 442-481 21-62 (337)
232 PRK07940 DNA polymerase III su 86.0 1.7 3.8E-05 53.0 7.5 26 458-483 39-64 (394)
233 PRK14955 DNA polymerase III su 86.0 8.2 0.00018 47.3 13.4 42 441-482 21-65 (397)
234 PRK07246 bifunctional ATP-depe 85.9 5.7 0.00012 53.2 12.8 68 435-506 244-313 (820)
235 COG3421 Uncharacterized protei 85.8 1.2 2.6E-05 55.2 5.8 107 462-577 4-125 (812)
236 TIGR00604 rad3 DNA repair heli 85.6 5.3 0.00011 52.7 12.3 96 1059-1155 508-618 (705)
237 PRK05707 DNA polymerase III su 85.0 2.3 5E-05 50.7 7.7 47 437-483 4-50 (328)
238 PF13177 DNA_pol3_delta2: DNA 84.9 12 0.00026 39.8 12.5 45 441-485 2-49 (162)
239 PRK14960 DNA polymerase III su 84.8 6.5 0.00014 50.6 11.8 39 445-483 24-65 (702)
240 PF07529 HSA: HSA; InterPro: 84.5 3.7 8.1E-05 37.5 7.3 37 254-290 36-72 (73)
241 PRK14969 DNA polymerase III su 84.1 2.8 6.1E-05 53.2 8.4 44 440-483 20-66 (527)
242 PRK08181 transposase; Validate 84.1 9.4 0.0002 44.3 11.9 46 437-482 88-133 (269)
243 PRK14974 cell division protein 83.9 9.8 0.00021 45.5 12.3 47 458-507 143-193 (336)
244 TIGR03015 pepcterm_ATPase puta 83.9 6.2 0.00013 45.1 10.5 41 440-480 27-68 (269)
245 PRK06645 DNA polymerase III su 83.8 2.6 5.7E-05 53.0 7.9 43 441-483 26-71 (507)
246 PRK00440 rfc replication facto 83.7 25 0.00053 41.2 15.6 39 443-481 24-64 (319)
247 PRK08058 DNA polymerase III su 83.6 4.1 8.8E-05 48.6 9.0 135 436-601 6-148 (329)
248 KOG0922 DEAH-box RNA helicase 83.4 5.5 0.00012 50.5 10.1 153 437-634 50-216 (674)
249 PF05621 TniB: Bacterial TniB 83.4 7 0.00015 45.7 10.4 134 438-602 39-189 (302)
250 PRK12723 flagellar biosynthesi 83.2 9.7 0.00021 46.5 12.1 131 457-619 176-314 (388)
251 PRK14957 DNA polymerase III su 83.0 7.6 0.00016 49.4 11.4 43 441-483 21-66 (546)
252 PRK14948 DNA polymerase III su 82.9 3.7 8E-05 53.1 8.9 43 440-482 20-65 (620)
253 KOG0333 U5 snRNP-like RNA heli 82.7 3 6.6E-05 51.2 7.3 115 453-577 280-409 (673)
254 PRK05298 excinuclease ABC subu 82.4 4.4 9.6E-05 52.8 9.4 77 435-517 11-89 (652)
255 PRK08116 hypothetical protein; 82.3 10 0.00023 43.9 11.5 42 455-499 114-155 (268)
256 cd01124 KaiC KaiC is a circadi 82.0 2.4 5.1E-05 45.6 5.8 47 459-508 3-49 (187)
257 smart00492 HELICc3 helicase su 81.9 7.4 0.00016 40.6 9.1 54 1098-1153 24-79 (141)
258 PRK08769 DNA polymerase III su 81.6 11 0.00024 44.8 11.5 49 435-483 3-54 (319)
259 PRK07764 DNA polymerase III su 81.2 5.9 0.00013 52.8 10.0 25 459-483 41-65 (824)
260 PF05876 Terminase_GpA: Phage 81.1 3.1 6.8E-05 53.1 7.2 168 430-612 10-189 (557)
261 PF13245 AAA_19: Part of AAA d 81.1 3.8 8.3E-05 38.0 5.9 42 458-500 13-56 (76)
262 PRK08451 DNA polymerase III su 80.9 14 0.00029 47.0 12.5 40 444-483 22-64 (535)
263 TIGR02397 dnaX_nterm DNA polym 80.9 12 0.00025 44.9 11.7 40 443-482 21-63 (355)
264 cd01121 Sms Sms (bacterial rad 80.4 12 0.00027 45.3 11.6 102 443-577 69-171 (372)
265 PRK05703 flhF flagellar biosyn 80.3 16 0.00034 45.2 12.7 56 564-619 299-359 (424)
266 PRK12900 secA preprotein trans 80.3 11 0.00025 50.3 11.8 139 437-601 139-284 (1025)
267 smart00573 HSA domain in helic 80.1 7.6 0.00016 35.8 7.5 36 253-288 35-70 (73)
268 PRK14952 DNA polymerase III su 80.1 12 0.00027 48.0 11.9 43 441-483 18-63 (584)
269 PRK14963 DNA polymerase III su 80.1 6.6 0.00014 49.6 9.4 43 441-483 19-64 (504)
270 PRK08691 DNA polymerase III su 79.1 11 0.00024 49.0 10.9 43 441-483 21-66 (709)
271 PRK07471 DNA polymerase III su 79.1 11 0.00023 45.8 10.4 44 440-483 23-69 (365)
272 PRK14951 DNA polymerase III su 78.8 5.4 0.00012 51.4 8.2 42 441-482 21-65 (618)
273 COG3267 ExeA Type II secretory 78.7 16 0.00035 41.6 10.9 47 457-507 53-105 (269)
274 PRK07952 DNA replication prote 78.7 20 0.00043 41.1 11.9 61 440-507 80-144 (244)
275 PRK14950 DNA polymerase III su 78.7 6.1 0.00013 50.9 8.8 43 440-482 20-65 (585)
276 PRK06893 DNA replication initi 78.4 20 0.00043 40.5 11.8 24 459-482 43-66 (229)
277 PRK14964 DNA polymerase III su 78.4 7.2 0.00016 48.9 8.9 41 443-483 20-63 (491)
278 PRK14087 dnaA chromosomal repl 78.1 15 0.00033 45.8 11.7 47 458-505 144-190 (450)
279 KOG0298 DEAD box-containing he 78.0 0.84 1.8E-05 60.9 0.7 144 1054-1203 1201-1346(1394)
280 PRK14953 DNA polymerase III su 78.0 9.1 0.0002 48.2 9.7 43 440-482 20-65 (486)
281 PRK14962 DNA polymerase III su 77.8 7 0.00015 49.0 8.6 25 458-482 39-63 (472)
282 KOG0951 RNA helicase BRR2, DEA 77.7 4.5 9.7E-05 54.3 7.0 108 451-578 1155-1267(1674)
283 KOG0346 RNA helicase [RNA proc 77.6 9.1 0.0002 46.3 8.8 139 455-602 56-211 (569)
284 PRK09111 DNA polymerase III su 77.5 14 0.00031 47.6 11.5 43 441-483 29-74 (598)
285 PRK07993 DNA polymerase III su 77.4 6.7 0.00015 46.9 8.0 48 436-483 2-52 (334)
286 PRK06871 DNA polymerase III su 76.8 13 0.00027 44.4 9.9 47 437-483 3-52 (325)
287 PRK05642 DNA replication initi 76.6 27 0.00059 39.5 12.3 23 458-480 48-70 (234)
288 PRK06835 DNA replication prote 76.4 22 0.00048 42.5 11.9 47 436-482 160-210 (329)
289 TIGR00362 DnaA chromosomal rep 76.2 11 0.00024 46.2 9.8 25 458-482 139-163 (405)
290 PRK00149 dnaA chromosomal repl 76.2 11 0.00025 46.8 10.0 47 458-505 151-197 (450)
291 PHA02544 44 clamp loader, smal 76.2 22 0.00047 41.9 11.9 48 429-479 16-67 (316)
292 PRK11889 flhF flagellar biosyn 76.1 19 0.00041 43.9 11.2 122 459-617 245-377 (436)
293 smart00491 HELICc2 helicase su 75.7 11 0.00024 39.4 8.1 55 1098-1153 21-80 (142)
294 TIGR02768 TraA_Ti Ti-type conj 75.0 17 0.00037 48.2 11.5 126 435-604 351-478 (744)
295 PF12340 DUF3638: Protein of u 74.9 5.9 0.00013 44.6 6.2 71 435-508 22-92 (229)
296 KOG0388 SNF2 family DNA-depend 74.6 51 0.0011 42.3 14.3 56 238-293 376-431 (1185)
297 TIGR00595 priA primosomal prot 74.6 18 0.00039 45.9 11.1 96 1052-1150 5-101 (505)
298 PRK14959 DNA polymerase III su 73.9 31 0.00067 44.6 12.9 38 445-482 25-65 (624)
299 PRK00411 cdc6 cell division co 73.7 35 0.00075 41.5 13.1 53 429-483 28-83 (394)
300 PRK08727 hypothetical protein; 73.7 15 0.00033 41.4 9.4 25 458-482 44-68 (233)
301 PHA03368 DNA packaging termina 73.7 13 0.00027 47.9 9.2 122 459-601 258-389 (738)
302 PRK06921 hypothetical protein; 73.6 23 0.0005 41.0 10.9 29 454-482 116-144 (266)
303 KOG0926 DEAH-box RNA helicase 73.5 8 0.00017 49.8 7.4 105 454-576 270-384 (1172)
304 PRK05580 primosome assembly pr 72.9 24 0.00051 46.5 12.0 96 1052-1150 170-266 (679)
305 PRK13889 conjugal transfer rel 72.8 20 0.00043 48.8 11.3 124 436-605 346-473 (988)
306 KOG0344 ATP-dependent RNA heli 72.8 5.5 0.00012 49.7 5.7 130 438-579 160-303 (593)
307 TIGR03117 cas_csf4 CRISPR-asso 72.6 21 0.00045 46.4 11.0 92 1062-1156 460-564 (636)
308 TIGR00678 holB DNA polymerase 72.3 23 0.00051 38.3 10.1 25 458-482 17-41 (188)
309 COG1199 DinG Rad3-related DNA 72.2 10 0.00023 49.5 8.6 69 435-505 14-83 (654)
310 cd01120 RecA-like_NTPases RecA 72.0 28 0.00061 35.7 10.3 34 459-495 3-36 (165)
311 PRK12422 chromosomal replicati 71.7 15 0.00032 45.8 9.2 33 458-493 144-176 (445)
312 COG4096 HsdR Type I site-speci 71.7 17 0.00038 47.4 9.8 121 1058-1180 406-545 (875)
313 KOG0920 ATP-dependent RNA heli 71.5 20 0.00044 47.9 10.7 135 451-602 184-329 (924)
314 COG1484 DnaC DNA replication p 71.3 13 0.00028 42.8 8.1 65 438-505 88-152 (254)
315 PRK05896 DNA polymerase III su 71.3 11 0.00024 48.3 8.1 43 441-483 21-66 (605)
316 PRK05563 DNA polymerase III su 71.2 22 0.00048 45.6 10.9 26 459-484 42-67 (559)
317 PRK14965 DNA polymerase III su 70.9 12 0.00025 48.3 8.4 44 441-484 21-67 (576)
318 PF13173 AAA_14: AAA domain 70.3 25 0.00055 35.6 9.2 94 454-601 1-97 (128)
319 PRK10917 ATP-dependent DNA hel 70.1 22 0.00048 46.8 10.8 94 1053-1148 291-389 (681)
320 PRK06090 DNA polymerase III su 70.0 24 0.00052 42.0 10.1 48 436-483 3-53 (319)
321 PRK06646 DNA polymerase III su 69.9 21 0.00046 37.9 8.6 84 1053-1155 10-97 (154)
322 PRK11823 DNA repair protein Ra 69.7 34 0.00073 42.7 11.8 62 443-507 67-129 (446)
323 PRK13342 recombination factor 69.2 67 0.0014 39.6 14.2 22 457-478 38-59 (413)
324 PF00448 SRP54: SRP54-type pro 69.0 25 0.00054 38.8 9.4 132 459-619 5-142 (196)
325 COG0470 HolB ATPase involved i 69.0 11 0.00025 44.1 7.2 26 458-483 27-52 (325)
326 cd02037 MRP-like MRP (Multiple 68.9 41 0.0009 35.7 10.9 53 563-619 66-118 (169)
327 PTZ00112 origin recognition co 68.8 28 0.00062 46.3 10.9 46 437-482 759-808 (1164)
328 TIGR03345 VI_ClpV1 type VI sec 67.2 25 0.00054 47.5 10.5 62 445-507 196-270 (852)
329 KOG0950 DNA polymerase theta/e 67.2 14 0.0003 48.8 7.8 68 1100-1170 526-598 (1008)
330 TIGR02688 conserved hypothetic 67.0 21 0.00046 43.8 8.8 43 440-482 194-236 (449)
331 COG0464 SpoVK ATPases of the A 66.7 23 0.00049 44.7 9.6 66 436-507 249-322 (494)
332 KOG0327 Translation initiation 66.7 12 0.00027 44.5 6.6 139 455-602 63-210 (397)
333 PRK08903 DnaA regulatory inact 66.6 43 0.00094 37.4 11.0 27 455-481 42-68 (227)
334 PRK14088 dnaA chromosomal repl 66.2 66 0.0014 40.1 13.4 26 458-483 133-158 (440)
335 PF06745 KaiC: KaiC; InterPro 65.9 17 0.00037 40.6 7.5 51 457-509 21-71 (226)
336 KOG0922 DEAH-box RNA helicase 65.7 20 0.00043 45.7 8.5 108 1073-1185 259-392 (674)
337 PF04364 DNA_pol3_chi: DNA pol 65.6 19 0.00041 37.4 7.1 79 1058-1153 15-97 (137)
338 PF00265 TK: Thymidine kinase; 65.5 21 0.00045 38.7 7.8 33 460-495 6-38 (176)
339 PHA03372 DNA packaging termina 64.5 24 0.00052 44.9 8.9 125 454-601 202-336 (668)
340 KOG0920 ATP-dependent RNA heli 64.3 21 0.00046 47.6 8.8 166 1056-1231 395-593 (924)
341 PRK12903 secA preprotein trans 64.0 37 0.00079 45.2 10.6 71 436-516 78-152 (925)
342 PRK14954 DNA polymerase III su 63.5 31 0.00066 44.8 9.9 44 440-483 20-66 (620)
343 cd01122 GP4d_helicase GP4d_hel 63.2 44 0.00095 38.3 10.5 50 454-505 29-78 (271)
344 PRK14086 dnaA chromosomal repl 63.1 46 0.001 43.0 11.2 46 458-504 317-362 (617)
345 PRK07133 DNA polymerase III su 62.9 20 0.00043 47.0 8.1 26 458-483 43-68 (725)
346 PRK12727 flagellar biosynthesi 62.7 1.5E+02 0.0033 37.7 15.3 38 455-493 350-387 (559)
347 KOG0738 AAA+-type ATPase [Post 62.5 24 0.00052 42.5 7.9 61 427-508 232-292 (491)
348 PF13481 AAA_25: AAA domain; P 62.4 30 0.00066 37.3 8.5 56 454-509 31-93 (193)
349 PRK09183 transposase/IS protei 62.1 42 0.00091 38.7 9.9 37 440-480 91-127 (259)
350 COG0552 FtsY Signal recognitio 61.5 33 0.00071 40.8 8.7 51 558-609 215-276 (340)
351 COG1643 HrpA HrpA-like helicas 61.4 30 0.00066 46.2 9.5 111 1071-1186 258-390 (845)
352 PRK08533 flagellar accessory p 61.2 64 0.0014 36.5 11.0 44 454-500 23-66 (230)
353 PRK00771 signal recognition pa 60.8 47 0.001 41.3 10.5 35 457-494 97-131 (437)
354 PRK14722 flhF flagellar biosyn 60.8 50 0.0011 40.2 10.5 42 454-496 136-177 (374)
355 PF00580 UvrD-helicase: UvrD/R 60.5 16 0.00036 42.3 6.4 55 437-497 1-56 (315)
356 PF06564 YhjQ: YhjQ protein; 60.3 11 0.00025 42.9 4.7 32 464-498 11-44 (243)
357 PRK06731 flhF flagellar biosyn 60.1 71 0.0015 37.2 11.2 124 456-616 76-210 (270)
358 PRK06964 DNA polymerase III su 60.0 30 0.00065 41.6 8.4 47 437-483 2-49 (342)
359 PRK06305 DNA polymerase III su 59.1 41 0.0009 42.0 9.8 42 441-482 22-66 (451)
360 PRK12377 putative replication 59.0 73 0.0016 36.6 11.0 27 456-482 102-128 (248)
361 PTZ00266 NIMA-related protein 58.9 36 0.00078 46.4 9.7 13 594-606 719-731 (1021)
362 PRK14970 DNA polymerase III su 58.9 67 0.0015 38.8 11.4 41 441-481 22-65 (367)
363 TIGR00416 sms DNA repair prote 58.4 58 0.0013 40.8 10.9 47 458-507 97-143 (454)
364 PRK05728 DNA polymerase III su 58.3 48 0.001 34.7 8.6 83 1053-1153 10-96 (142)
365 TIGR00643 recG ATP-dependent D 58.1 41 0.00089 43.9 9.9 94 1053-1148 265-363 (630)
366 PRK06904 replicative DNA helic 57.5 77 0.0017 39.9 11.8 52 454-507 220-271 (472)
367 PRK04132 replication factor C 57.4 32 0.0007 46.0 8.7 48 564-611 630-678 (846)
368 KOG1133 Helicase of the DEAD s 57.4 5.8 0.00013 50.3 1.9 73 502-590 299-374 (821)
369 TIGR03346 chaperone_ClpB ATP-d 57.2 41 0.00089 45.5 10.0 38 444-481 181-220 (852)
370 PRK04195 replication factor C 57.1 61 0.0013 40.8 11.0 24 456-479 40-63 (482)
371 PF00004 AAA: ATPase family as 56.9 29 0.00063 34.5 6.7 36 459-500 2-37 (132)
372 COG1198 PriA Primosomal protei 56.9 31 0.00066 45.4 8.3 80 1052-1133 225-305 (730)
373 PRK13894 conjugal transfer ATP 56.6 1.2E+02 0.0026 36.2 12.7 132 435-613 131-262 (319)
374 PRK13826 Dtr system oriT relax 56.0 68 0.0015 44.3 11.5 127 436-605 381-508 (1102)
375 KOG0989 Replication factor C, 55.9 38 0.00083 39.7 7.9 42 440-481 40-83 (346)
376 PTZ00293 thymidine kinase; Pro 55.6 32 0.00069 38.5 7.1 35 459-496 8-42 (211)
377 PF01443 Viral_helicase1: Vira 55.5 32 0.00068 38.3 7.3 40 564-606 62-101 (234)
378 PRK06647 DNA polymerase III su 55.5 42 0.0009 43.2 9.1 25 458-482 41-65 (563)
379 PRK11054 helD DNA helicase IV; 55.1 31 0.00067 45.4 8.0 68 436-509 196-265 (684)
380 PRK10416 signal recognition pa 55.1 1.1E+02 0.0023 36.6 11.9 31 460-493 119-149 (318)
381 COG0653 SecA Preprotein transl 54.7 97 0.0021 41.2 12.2 113 1053-1170 410-534 (822)
382 PRK07399 DNA polymerase III su 54.7 55 0.0012 38.9 9.4 43 441-483 9-54 (314)
383 TIGR01242 26Sp45 26S proteasom 54.5 71 0.0015 38.6 10.6 41 455-501 156-196 (364)
384 KOG0991 Replication factor C, 53.4 15 0.00033 41.2 4.0 25 456-480 49-73 (333)
385 PRK14873 primosome assembly pr 53.2 60 0.0013 42.6 10.1 79 1054-1134 170-250 (665)
386 TIGR00708 cobA cob(I)alamin ad 52.9 21 0.00047 38.6 5.1 53 558-610 91-147 (173)
387 PRK00080 ruvB Holliday junctio 52.8 1.5E+02 0.0032 35.3 12.8 24 456-479 52-75 (328)
388 PF03354 Terminase_1: Phage Te 52.7 1.1E+02 0.0023 38.7 12.0 147 439-602 1-162 (477)
389 PF07015 VirC1: VirC1 protein; 52.5 1.3E+02 0.0028 34.2 11.3 39 465-506 12-52 (231)
390 KOG0740 AAA+-type ATPase [Post 51.9 27 0.00059 42.9 6.3 46 457-508 188-233 (428)
391 PF13892 DBINO: DNA-binding do 51.8 1.8E+02 0.0038 30.5 11.1 60 228-287 49-108 (139)
392 PRK06067 flagellar accessory p 51.7 1.4E+02 0.0031 33.5 11.8 48 458-508 28-75 (234)
393 PF07529 HSA: HSA; InterPro: 51.6 59 0.0013 29.6 7.2 62 197-259 9-71 (73)
394 PRK05986 cob(I)alamin adenolsy 51.4 1.6E+02 0.0035 32.5 11.5 141 454-614 21-169 (191)
395 PRK10865 protein disaggregatio 49.9 59 0.0013 44.0 9.7 37 445-481 187-225 (857)
396 cd00984 DnaB_C DnaB helicase C 49.9 63 0.0014 36.3 8.6 126 1053-1178 22-240 (242)
397 cd01125 repA Hexameric Replica 49.9 2E+02 0.0042 32.5 12.6 52 456-507 2-65 (239)
398 KOG0952 DNA/RNA helicase MER3/ 49.7 14 0.0003 49.2 3.5 111 452-579 940-1061(1230)
399 PRK07276 DNA polymerase III su 49.7 65 0.0014 37.9 8.8 47 436-483 2-50 (290)
400 PF01695 IstB_IS21: IstB-like 49.4 35 0.00075 37.0 6.1 53 443-506 39-91 (178)
401 COG1066 Sms Predicted ATP-depe 49.0 78 0.0017 38.7 9.2 87 459-579 97-183 (456)
402 TIGR00365 monothiol glutaredox 48.4 1E+02 0.0022 30.0 8.5 57 1072-1128 11-73 (97)
403 COG0626 MetC Cystathionine bet 48.4 46 0.001 40.8 7.5 90 1055-1169 85-175 (396)
404 PRK13709 conjugal transfer nic 48.4 83 0.0018 45.5 10.9 136 433-604 964-1101(1747)
405 PRK08760 replicative DNA helic 48.2 93 0.002 39.3 10.4 50 457-508 231-280 (476)
406 PRK08699 DNA polymerase III su 48.1 1.1E+02 0.0024 36.5 10.6 47 437-483 2-49 (325)
407 COG0630 VirB11 Type IV secreto 48.0 27 0.00059 41.4 5.5 132 435-615 126-261 (312)
408 COG0653 SecA Preprotein transl 48.0 83 0.0018 41.8 10.0 141 455-617 93-241 (822)
409 PHA02518 ParA-like protein; Pr 48.0 93 0.002 33.9 9.4 39 462-503 8-48 (211)
410 PRK05564 DNA polymerase III su 47.6 77 0.0017 37.5 9.2 24 459-482 30-53 (313)
411 CHL00095 clpC Clp protease ATP 47.3 69 0.0015 43.2 9.7 26 455-480 200-225 (821)
412 TIGR02639 ClpA ATP-dependent C 47.3 92 0.002 41.5 10.7 27 455-481 203-229 (731)
413 cd03115 SRP The signal recogni 47.1 3.1E+02 0.0068 29.0 13.0 24 459-482 4-27 (173)
414 KOG1144 Translation initiation 46.9 46 0.001 43.0 7.2 43 564-612 565-607 (1064)
415 PRK13341 recombination factor 46.9 52 0.0011 43.6 8.2 22 457-478 54-75 (725)
416 KOG0924 mRNA splicing factor A 46.7 46 0.001 42.6 7.1 29 448-476 364-392 (1042)
417 PF00308 Bac_DnaA: Bacterial d 46.3 1.1E+02 0.0024 34.3 9.7 37 564-600 97-137 (219)
418 PF12622 NpwBP: mRNA biogenesi 46.1 9.4 0.0002 32.4 0.8 11 1146-1156 4-14 (48)
419 PRK08006 replicative DNA helic 46.1 1.2E+02 0.0026 38.2 10.9 50 455-506 224-273 (471)
420 smart00573 HSA domain in helic 46.0 1E+02 0.0023 28.3 7.8 62 198-260 10-72 (73)
421 TIGR03689 pup_AAA proteasome A 45.8 46 0.00099 42.2 7.2 27 455-481 216-242 (512)
422 KOG2543 Origin recognition com 45.4 2.9E+02 0.0062 33.8 13.0 143 436-605 9-161 (438)
423 PRK12724 flagellar biosynthesi 45.3 1.3E+02 0.0029 37.1 10.8 56 561-617 296-359 (432)
424 PRK08840 replicative DNA helic 44.7 1.4E+02 0.003 37.6 11.1 51 454-506 216-266 (464)
425 KOG0923 mRNA splicing factor A 44.4 53 0.0011 42.1 7.1 134 459-632 284-429 (902)
426 PTZ00266 NIMA-related protein 44.0 83 0.0018 43.1 9.5 9 75-83 224-232 (1021)
427 TIGR00665 DnaB replicative DNA 43.8 1.3E+02 0.0027 37.4 10.7 49 455-505 195-243 (434)
428 KOG1265 Phospholipase C [Lipid 43.3 5.5E+02 0.012 34.5 15.6 43 194-236 1035-1077(1189)
429 TIGR01243 CDC48 AAA family ATP 42.5 83 0.0018 41.9 9.2 38 455-498 212-249 (733)
430 cd01128 rho_factor Transcripti 42.5 28 0.00061 39.9 4.3 34 444-478 6-39 (249)
431 KOG0924 mRNA splicing factor A 42.0 52 0.0011 42.1 6.6 106 1096-1204 597-721 (1042)
432 PRK14971 DNA polymerase III su 41.7 1.4E+02 0.003 38.9 10.8 25 458-482 42-66 (614)
433 cd03028 GRX_PICOT_like Glutare 41.3 1.1E+02 0.0024 29.1 7.5 45 1072-1116 7-57 (90)
434 TIGR00635 ruvB Holliday juncti 41.2 1.2E+02 0.0025 35.6 9.3 23 457-479 32-54 (305)
435 PF13607 Succ_CoA_lig: Succiny 40.8 93 0.002 32.4 7.4 86 1074-1180 3-90 (138)
436 cd00268 DEADc DEAD-box helicas 40.8 3.1E+02 0.0068 29.6 12.2 132 1053-1193 45-192 (203)
437 COG1110 Reverse gyrase [DNA re 40.7 1.1E+02 0.0024 41.4 9.4 88 1056-1152 322-416 (1187)
438 PF03237 Terminase_6: Terminas 40.6 2.1E+02 0.0046 33.7 11.7 50 557-606 90-141 (384)
439 PRK11034 clpA ATP-dependent Cl 39.7 67 0.0015 42.8 7.6 27 454-480 206-232 (758)
440 CHL00176 ftsH cell division pr 39.4 1.3E+02 0.0029 39.2 10.2 23 456-478 217-239 (638)
441 TIGR00580 mfd transcription-re 38.6 1.4E+02 0.0031 40.7 10.5 94 1053-1148 481-579 (926)
442 PRK05973 replicative DNA helic 38.4 70 0.0015 36.5 6.6 57 447-506 56-112 (237)
443 PRK07004 replicative DNA helic 38.1 1.4E+02 0.0031 37.4 9.8 49 455-505 213-261 (460)
444 TIGR02640 gas_vesic_GvpN gas v 38.1 73 0.0016 36.7 6.9 47 441-493 7-53 (262)
445 TIGR01547 phage_term_2 phage t 38.0 1.4E+02 0.0031 36.3 9.8 36 459-494 5-40 (396)
446 PRK10867 signal recognition pa 38.0 1.8E+02 0.004 36.2 10.6 43 459-503 104-150 (433)
447 PRK05748 replicative DNA helic 37.8 1.2E+02 0.0027 37.7 9.3 50 454-505 202-251 (448)
448 PF07946 DUF1682: Protein of u 37.6 79 0.0017 37.7 7.2 10 295-304 312-321 (321)
449 COG1435 Tdk Thymidine kinase [ 37.0 1.6E+02 0.0035 32.6 8.7 109 459-600 8-117 (201)
450 PTZ00454 26S protease regulato 37.0 58 0.0013 40.0 6.1 42 455-502 179-220 (398)
451 COG0541 Ffh Signal recognition 36.6 72 0.0016 39.3 6.5 85 465-576 110-194 (451)
452 PRK10919 ATP-dependent DNA hel 36.5 44 0.00096 44.0 5.3 55 437-497 3-58 (672)
453 TIGR00150 HI0065_YjeE ATPase, 36.2 45 0.00098 34.6 4.2 34 447-480 14-47 (133)
454 COG3972 Superfamily I DNA and 36.1 1.1E+02 0.0025 38.1 8.0 48 564-621 295-343 (660)
455 TIGR00959 ffh signal recogniti 36.1 1.8E+02 0.0038 36.3 10.0 34 458-493 102-135 (428)
456 cd00561 CobA_CobO_BtuR ATP:cor 36.0 3E+02 0.0066 29.5 10.5 52 559-610 90-145 (159)
457 KOG0332 ATP-dependent RNA heli 36.0 1E+02 0.0023 37.0 7.4 152 436-601 96-273 (477)
458 TIGR03600 phage_DnaB phage rep 35.9 1.2E+02 0.0027 37.4 8.8 49 455-505 194-242 (421)
459 COG2812 DnaX DNA polymerase II 35.5 61 0.0013 41.0 5.9 43 441-483 21-66 (515)
460 PRK13849 putative crown gall t 35.3 2.1E+02 0.0045 32.5 9.8 37 464-503 11-49 (231)
461 TIGR01074 rep ATP-dependent DN 35.1 76 0.0017 41.7 7.2 67 437-509 2-70 (664)
462 COG2256 MGS1 ATPase related to 34.8 1.5E+02 0.0033 36.3 8.7 43 565-610 105-147 (436)
463 COG4646 DNA methylase [Transcr 34.7 24 0.00051 43.0 2.1 44 591-634 472-517 (637)
464 KOG0926 DEAH-box RNA helicase 34.6 28 0.0006 45.2 2.8 62 1118-1182 623-703 (1172)
465 KOG0780 Signal recognition par 34.5 92 0.002 37.7 6.8 97 459-582 105-201 (483)
466 TIGR00064 ftsY signal recognit 34.4 3.8E+02 0.0083 31.2 12.0 33 459-494 76-108 (272)
467 PF03709 OKR_DC_1_N: Orn/Lys/A 34.4 2.1E+02 0.0046 28.7 8.6 99 1057-1159 2-105 (115)
468 PRK13833 conjugal transfer pro 34.1 61 0.0013 38.7 5.4 44 435-481 127-170 (323)
469 PF00437 T2SE: Type II/IV secr 34.0 54 0.0012 37.7 5.0 36 447-482 119-154 (270)
470 cd01121 Sms Sms (bacterial rad 33.4 3.4E+02 0.0074 33.1 11.8 128 1053-1183 91-264 (372)
471 PRK09165 replicative DNA helic 33.0 2.4E+02 0.0051 35.9 10.7 51 457-507 219-281 (497)
472 TIGR00767 rho transcription te 33.0 80 0.0017 38.8 6.2 28 454-481 167-194 (415)
473 TIGR02782 TrbB_P P-type conjug 32.3 79 0.0017 37.3 6.0 36 446-481 123-158 (299)
474 TIGR00614 recQ_fam ATP-depende 31.4 2.3E+02 0.005 35.6 10.3 77 1053-1133 35-111 (470)
475 PRK12608 transcription termina 31.3 1.5E+02 0.0033 36.1 8.1 45 437-482 116-160 (380)
476 PHA00350 putative assembly pro 31.2 97 0.0021 38.1 6.6 15 462-476 8-22 (399)
477 PRK03992 proteasome-activating 31.1 1.3E+02 0.0028 36.8 7.8 41 456-502 166-206 (389)
478 PF04007 DUF354: Protein of un 30.8 1.6E+02 0.0035 35.4 8.2 96 1052-1153 7-114 (335)
479 TIGR02655 circ_KaiC circadian 30.6 1.5E+02 0.0033 37.4 8.5 65 441-508 248-313 (484)
480 PRK09302 circadian clock prote 30.2 1.8E+02 0.004 36.9 9.2 52 455-508 31-82 (509)
481 PRK14712 conjugal transfer nic 29.4 2.6E+02 0.0056 40.4 10.8 138 433-606 832-971 (1623)
482 PF05127 Helicase_RecD: Helica 29.2 39 0.00085 36.7 2.5 34 460-495 2-35 (177)
483 PF12846 AAA_10: AAA-like doma 29.2 1.4E+02 0.0031 34.1 7.5 45 457-504 3-47 (304)
484 PLN03086 PRLI-interacting fact 29.2 1.5E+02 0.0033 37.9 7.9 35 288-322 36-70 (567)
485 TIGR03881 KaiC_arch_4 KaiC dom 29.1 1.4E+02 0.0029 33.4 7.0 50 455-507 20-69 (229)
486 TIGR01425 SRP54_euk signal rec 29.0 6.3E+02 0.014 31.5 13.1 33 459-494 104-136 (429)
487 PRK11773 uvrD DNA-dependent he 28.9 79 0.0017 42.0 5.8 55 436-496 9-64 (721)
488 PRK09302 circadian clock prote 28.7 1.6E+02 0.0035 37.4 8.3 49 458-509 276-324 (509)
489 TIGR01243 CDC48 AAA family ATP 28.7 1.4E+02 0.0029 39.9 7.9 43 456-504 488-530 (733)
490 COG3973 Superfamily I DNA and 28.6 85 0.0018 40.1 5.4 65 435-504 211-278 (747)
491 PRK10646 ADP-binding protein; 28.6 75 0.0016 33.8 4.4 44 447-490 20-63 (153)
492 PRK10689 transcription-repair 28.3 2.6E+02 0.0057 39.3 10.7 95 1053-1148 630-728 (1147)
493 KOG0947 Cytoplasmic exosomal R 28.2 91 0.002 41.7 5.8 62 1121-1185 654-724 (1248)
494 PRK10824 glutaredoxin-4; Provi 28.0 2.7E+02 0.0058 28.2 8.0 71 1064-1136 7-84 (115)
495 PRK09376 rho transcription ter 27.9 2E+02 0.0044 35.3 8.4 40 442-482 157-196 (416)
496 KOG0735 AAA+-type ATPase [Post 27.8 5E+02 0.011 34.3 11.8 149 437-590 413-585 (952)
497 PRK13900 type IV secretion sys 27.4 75 0.0016 38.1 4.7 36 446-481 151-186 (332)
498 TIGR02974 phageshock_pspF psp 27.3 1E+03 0.022 28.5 14.3 46 453-501 20-65 (329)
499 PRK10263 DNA translocase FtsK; 27.2 1.1E+02 0.0023 42.8 6.4 42 456-497 1011-1053(1355)
500 TIGR00376 DNA helicase, putati 27.2 1E+02 0.0022 40.3 6.3 54 1054-1107 183-236 (637)
No 1
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-253 Score=2158.96 Aligned_cols=1033 Identities=54% Similarity=0.856 Sum_probs=917.3
Q ss_pred CCccccccccCCCCCCCCccCCCCCcccccCCceeecCCCeeeecCcchhcccccCCCCCCcccceeeeeeecccchhHH
Q 000642 1 METTSDWLNDISPRRPTNYHETEFTPKVMYEPAYLDIGEGITYRIPLSYDKLAPSLNLPSFSDIQVEEFYLKGTLDLGSL 80 (1377)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1377)
+..+.|+.+|+.++.+|.||+.|.+|++.|+|.|+|||||+.|+|||.|+||.+|||||+||+|+|+||+++||+|+++|
T Consensus 150 ~dns~e~~~D~dsh~r~~~~d~d~~~k~a~e~~~~~i~d~~i~~ie~ry~kl~aSl~l~s~s~i~~ke~n~~~T~~~r~L 229 (1185)
T KOG0388|consen 150 MDNSPEFAADVDSHRRGSYHDRDITPKIAYEPSYLDIGDGVIYKIEPRYDKLVASLNLPSFSDIHVKEFNLKGTLDLRSL 229 (1185)
T ss_pred cCCCccccccCChhhhcchhhhccchhhhccccccCcCCCccccCcchhhhhhhhcCCCchhHHHHHHHhhcccccHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccCCccCCCCCCCcchhHHHHHHHHHhhcCCCCcceeeeeccCC-CCCCCCCccccchhhhcccCCeeEEEE
Q 000642 81 AAMMANDKRFGPRSRVGMGEPRPQYESLQARLKALVASNSPQKFSLKVSDTG-NSSIPEGAAGSIQRSILSEGGILQVYY 159 (1377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1377)
+.||++||+-|.++|.|||+|+|||++++.+||.+...+++..|++.++||+ +|.+|++.+|...+.++++||..+|++
T Consensus 230 ~~~~~s~K~s~v~~r~~~n~p~~~y~~~~sklk~l~~~~~~~~~k~~indAa~~s~~~k~~~g~~a~~l~n~~~~~e~h~ 309 (1185)
T KOG0388|consen 230 AELMASDKRSGVRSRNGMNEPRPQYEMTGSKLKDLLKVYERRGEKLNINDAANGSRHIKKCVGDVANDLLNEGGYPEVHH 309 (1185)
T ss_pred HHHHhhcchhhhhhccCCCCCCcchhhhhhHHHHhhhhcccchhhhhhhhhhccchhhhcccccchhhhhccCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred EEeccCCcchhhhhccCcccccccCCchhhhHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000642 160 VKVLEKGETYEIIERALPKKVKVKKDPSVIEKEEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVK 239 (1377)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1377)
+|.+++||.++|+-+.+|+|...+.+|.++++-+ .++.++|.+||||||+||||+++++++++.+|+||+|++|+||+|
T Consensus 310 ~r~l~kgd~~e~t~~~~~~k~nak~d~av~~k~e-~~~~~~w~~iaRkdi~k~~riiqq~q~~rstnakk~s~lC~REar 388 (1185)
T KOG0388|consen 310 LRKLAKGDISEITNEMLSQKGNAKTDPAVISKTE-RKITAEWISIARKDIRKVHRIIQQYQSARSTNAKKTSILCAREAR 388 (1185)
T ss_pred HHHhccccHHHHHHhhcccccccccchhhhhhHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999887644 489999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q 000642 240 MKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFM 319 (1377)
Q Consensus 240 ~~~~~~~~~~k~~~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~ 319 (1377)
+|+.|+.|..|+.|+||||++|||+.|||||||+|||+|||+||||+|++|+|+|+||.+||+|||||||||||||||||
T Consensus 389 r~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskRQarklnfLltQTELySHFi 468 (1185)
T KOG0388|consen 389 RWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKRQARKLNFLLTQTELYSHFI 468 (1185)
T ss_pred HhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCchhhhccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHhhhHH
Q 000642 320 QNKSSSQPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTE 399 (1377)
Q Consensus 320 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~ 399 (1377)
|+|+...+++++|.+... .+..++..-+++|++.+++.++++||+|++ ++..+.+||.+-...++..+.+
T Consensus 469 ~rK~d~n~se~lp~~~ne---------~sa~e~n~~~d~eea~l~~~~lraAq~Av~-a~~~t~afd~e~~~~~ntse~e 538 (1185)
T KOG0388|consen 469 GRKNDCNLSEALPAERNE---------ISAGEPNGMKDYEEAMLQKLRLRAAQDAVS-AKQITDAFDTEFGAERNTSEFE 538 (1185)
T ss_pred hhcccCCccccCCccccc---------ccccCcccCCChHHHHHHHHHHHHHHHHHh-HHHhhhhhhhhhhhcccccccc
Confidence 999999998888776542 233345556788999999999999999998 8999999998866555433322
Q ss_pred HhhhhccccCCCCcccCCCCCCCCCCcccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHH
Q 000642 400 AAMLDVSVAGSGNIDLHNPSTMPVTSTVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 479 (1377)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L 479 (1377)
...++++|++|+.+....+|+||++|+|+|++||++||+||++||++|+|||||||||||||||+||+||||
T Consensus 539 --------~~e~e~n~q~~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhL 610 (1185)
T KOG0388|consen 539 --------GPENEGNFQGPTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHL 610 (1185)
T ss_pred --------CccccccccCCccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHH
Confidence 335678999999888788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh
Q 000642 480 AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY 559 (1377)
Q Consensus 480 ~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~ 559 (1377)
++.++||||||||+|+|+++||.+||.+|+|+|++++|||+..+|++||+||++|++|+++++||||||||+++|.|.+|
T Consensus 611 aE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky 690 (1185)
T KOG0388|consen 611 AETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKY 690 (1185)
T ss_pred HHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccc
Q 000642 560 FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESH 639 (1377)
Q Consensus 560 l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~ 639 (1377)
|++++|+||||||||.||+++|.||+.|++|+|++|||||||||||+|+|||+|||||||++||||++|++||+|+||+|
T Consensus 691 ~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEsh 770 (1185)
T KOG0388|consen 691 LQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESH 770 (1185)
T ss_pred HHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhH
Q 000642 640 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKI 719 (1377)
Q Consensus 640 ~~~~~~lne~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~ 719 (1377)
++.++++|++||+|||+|||||||||+|++|.++|+.|+|++|+|+||.+|+.+|+.+++.|+...
T Consensus 771 Ae~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E-------------- 836 (1185)
T KOG0388|consen 771 AEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSME-------------- 836 (1185)
T ss_pred HHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred HHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhc
Q 000642 720 LNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSA 799 (1377)
Q Consensus 720 ~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~ 799 (1377)
+.++|||||||||||+||+|.++++.++++-.. .++++ +++.+|||.|.||+|++.+.++
T Consensus 837 --~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~---------nl~dv-~S~Grnpi~ykiP~L~~~d~le-------- 896 (1185)
T KOG0388|consen 837 --MENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD---------NLGDV-VSFGRNPIDYKIPSLVAKDALE-------- 896 (1185)
T ss_pred --HHHHHHHHHHhcCChHHHhhcCCcceeEEEccc---------CHHHH-HhCCCCceeecchHHHHHHHHH--------
Confidence 335999999999999999999999988876443 25566 8889999999999999999874
Q ss_pred ccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 000642 800 VGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFL 879 (1377)
Q Consensus 800 ~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~ 879 (1377)
..+|||| +.+.... +......+.+.+.|.. .++
T Consensus 897 ----------~~~fniy--e~i~~~~-----g~~~~v~Geg~~~w~~--~l~---------------------------- 929 (1185)
T KOG0388|consen 897 ----------MFRFNIY--EMIERIN-----GLRRIVNGEGPNAWYL--RLS---------------------------- 929 (1185)
T ss_pred ----------HHHHhHH--HHHHHHh-----hhHhhhcCCCcchhcc--cce----------------------------
Confidence 2346666 3332211 0111111222222210 000
Q ss_pred hhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccc
Q 000642 880 DGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTF 959 (1377)
Q Consensus 880 ~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1377)
.+...++......+... .++.+.++.|.....+..++.+ +++ ...+....+|+
T Consensus 930 -------~e~k~G~~~~~n~e~~~-Kavtr~ll~p~~~~~e~~~rvi--------------~~e-----~~~L~~~~y~y 982 (1185)
T KOG0388|consen 930 -------LEFKYGGYVFRNVEEAG-KAVTRNLLNPESSLLESMRRVI--------------DEE-----AYRLQRHVYCY 982 (1185)
T ss_pred -------eeeccCCcccccHHHHH-HHHHHHhcCcccchhHHHHHHh--------------hHH-----HHHhhhheeee
Confidence 01111111111111111 3556666666654444433321 111 14567788999
Q ss_pred cCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCC
Q 000642 960 IPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGS 1039 (1377)
Q Consensus 960 ~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s 1039 (1377)
.|.+.+||+-+.. +.++| ++++..+.+++...+|
T Consensus 983 ~P~v~apPvLI~~-----------------------------ead~P---------------eId~E~~~~pLn~~i~-- 1016 (1185)
T KOG0388|consen 983 SPVVAAPPVLISN-----------------------------EADLP---------------EIDLENRHIPLNTTIY-- 1016 (1185)
T ss_pred ccccCCCCeeeec-----------------------------ccCCC---------------CCCccccCccccccee--
Confidence 9999999974421 11111 1222223333333444
Q ss_pred CCCCCCCCccccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q 000642 1040 CPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1377)
Q Consensus 1040 ~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq 1119 (1377)
+|||+.| +++||||.+||+||.+|+++|||||+|+|||+|+|+||+||.++||+|+|||||++.++|+++|.+||
T Consensus 1017 ~Ppm~~F-----itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ 1091 (1185)
T KOG0388|consen 1017 VPPMNTF-----ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ 1091 (1185)
T ss_pred cCcHHhh-----hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc
Confidence 7888766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000642 1120 HRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTV 1199 (1377)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l 1199 (1377)
+ ++||||||||||||+|||||+||||||||+||||+.|+||||||||+||||+|||||||++|||||+|++||.+|.++
T Consensus 1092 ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~v 1170 (1185)
T KOG0388|consen 1092 A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEV 1170 (1185)
T ss_pred C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccCC
Q 000642 1200 QQLVMTGGHVQGD 1212 (1377)
Q Consensus 1200 ~~~Vi~g~~~~~~ 1212 (1377)
|++||.|+.++++
T Consensus 1171 Qq~Vm~G~~~qg~ 1183 (1185)
T KOG0388|consen 1171 QQMVMHGNIFQGE 1183 (1185)
T ss_pred HHHHHcCCcccCC
Confidence 9999999988764
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.9e-131 Score=1160.00 Aligned_cols=482 Identities=49% Similarity=0.843 Sum_probs=433.1
Q ss_pred CCchhc-cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 429 TPELFK-GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 429 qP~~l~-~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
+|..+. |+||+||++||+||+.+|++|+|||||||||||||+|+||||.||....++.|||||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 788888 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHH
Q 000642 508 FCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1377)
Q Consensus 508 f~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal 587 (1377)
|+|++++++|+|...+|..+++.+-. ...||||||||+++.++...|+++.|.|+||||||+|||.+|..++.+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~------~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~l 312 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIML------PGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKIL 312 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhc------cCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHH
Confidence 99999999999999999888776532 248999999999999999999999999999999999999999999999
Q ss_pred HhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHhH
Q 000642 588 LSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVK 667 (1377)
Q Consensus 588 ~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~K 667 (1377)
..|++.+||||||||+|||+.||||||+||+|.+|++++.|..||...+... +.+.+.+||.+|+||+|||+|
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~-------~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG-------DQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc-------CHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998753222 344789999999999999999
Q ss_pred hhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCcc
Q 000642 668 KDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSY 747 (1377)
Q Consensus 668 kdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s~ 747 (1377)
.+|+..||||.|..+||.||..|+.+|.++..+- + +.+.. .+...-..|+|+|||||||||||+||...+..-|
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kd-l-~~~n~----~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~p 459 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKD-L-DALNG----EGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPP 459 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhc-c-hhhcc----cccchhhHHHHHHHHHHHhcCCccccCCCCCCCC
Confidence 9999999999999999999999999999987652 1 11111 1111357899999999999999999864321100
Q ss_pred cccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhh
Q 000642 748 LYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFS 827 (1377)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~ 827 (1377)
|
T Consensus 460 y------------------------------------------------------------------------------- 460 (971)
T KOG0385|consen 460 Y------------------------------------------------------------------------------- 460 (971)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhh
Q 000642 828 LASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAV 907 (1377)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~ 907 (1377)
T Consensus 461 -------------------------------------------------------------------------------- 460 (971)
T KOG0385|consen 461 -------------------------------------------------------------------------------- 460 (971)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccc
Q 000642 908 TRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHD 987 (1377)
Q Consensus 908 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~ 987 (1377)
.
T Consensus 461 -------------------------t------------------------------------------------------ 461 (971)
T KOG0385|consen 461 -------------------------T------------------------------------------------------ 461 (971)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred hhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHHH
Q 000642 988 PWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKR 1067 (1377)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~ 1067 (1377)
.-+.|++.||||.+|+.||..
T Consensus 462 -----------------------------------------------------------tdehLv~nSGKm~vLDkLL~~ 482 (971)
T KOG0385|consen 462 -----------------------------------------------------------TDEHLVTNSGKMLVLDKLLPK 482 (971)
T ss_pred -----------------------------------------------------------cchHHHhcCcceehHHHHHHH
Confidence 001236779999999999999
Q ss_pred HhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcCcCCEE
Q 000642 1068 LRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTV 1146 (1377)
Q Consensus 1068 Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~-di~VfLLSTrAGGlGINLTaAdtV 1146 (1377)
|+++|||||||||||+|||||++|+.+++|.|||||||++.++|.+.|+.|+..+ ..|||||||||||+||||++||||
T Consensus 483 Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 483 LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 9999999999999999999999999999999999999999999999999999844 799999999999999999999999
Q ss_pred EEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccC---CCCCHHhHHHhh
Q 000642 1147 IFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQG---DILAPEDVVSLL 1223 (1377)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~---~~l~~~di~~ll 1223 (1377)
||||+||||.+|.|||||||||||+|+|.||||||++||||+|+.||..|..+.++||++|.... ..+..+++..++
T Consensus 563 IlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~ 642 (971)
T KOG0385|consen 563 ILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLL 642 (971)
T ss_pred EEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999984322 234566676666
Q ss_pred cCc
Q 000642 1224 LDD 1226 (1377)
Q Consensus 1224 ~d~ 1226 (1377)
..+
T Consensus 643 r~g 645 (971)
T KOG0385|consen 643 RFG 645 (971)
T ss_pred HcC
Confidence 443
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.4e-131 Score=1181.73 Aligned_cols=728 Identities=38% Similarity=0.623 Sum_probs=504.6
Q ss_pred CcccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 425 STVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 425 ~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
+.+..|.+|+|+||+||..||+||+.||+++.|||||||||||||||+|||||||++..++|||+|||||.|++.||.-|
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEME 683 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEME 683 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHH
Q 000642 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRW 584 (1377)
Q Consensus 505 i~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~ 584 (1377)
|++|||+|+++.|+|+.++|+..|++|. +.+.|||+||||.++.+|...|++.+|+|+||||||+|||..|.||
T Consensus 684 lKRwcPglKILTYyGs~kErkeKRqgW~------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrW 757 (1958)
T KOG0391|consen 684 LKRWCPGLKILTYYGSHKERKEKRQGWA------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRW 757 (1958)
T ss_pred HhhhCCcceEeeecCCHHHHHHHhhccc------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHH
Confidence 9999999999999999999999999997 5688999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhH
Q 000642 585 KTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLR 664 (1377)
Q Consensus 585 kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLR 664 (1377)
++|+.|++.+||||||||+||+++|||+|||||||..|.||+.|+.||++|.....+.+...|..-+.|||.+|+||+||
T Consensus 758 QAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 758 QALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred HHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888899999999999999999
Q ss_pred HhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccC
Q 000642 665 RVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEG 744 (1377)
Q Consensus 665 R~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~ 744 (1377)
|+|+||+++||.|.|++|+|.||.+||.||+.+..+-... ..+..+.+.+++|+|||||||||||.||+.+.+
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK-------etLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv 910 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK-------ETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPV 910 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchh-------hHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCC
Confidence 9999999999999999999999999999999998775433 344456789999999999999999999999999
Q ss_pred CcccccccCCCCCCCC---CCCCcccccc---cCCCCccccccchhhHHHhhhhhhhhh---------------------
Q 000642 745 SSYLYFGEIPNSLLPP---PFGELEDISF---SGVRNPIEYKIPKIVHQEILQSSEILC--------------------- 797 (1377)
Q Consensus 745 ~s~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~n~i~~~lp~l~~~e~~~~~~~~~--------------------- 797 (1377)
.++|....+.-+.... ..+++.-..- .-...+-.+.+|+..+.....+...+.
T Consensus 911 ~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~ 990 (1958)
T KOG0391|consen 911 GSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAP 990 (1958)
T ss_pred CcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccc
Confidence 9998654432221100 0000000000 000011111222221111111100000
Q ss_pred --------------hcccCCchhHHHhhhhccccc------hhh---------------------hhhhhhccCC-----
Q 000642 798 --------------SAVGHGISRELFQKRFNIFSA------ENV---------------------YQSIFSLASG----- 831 (1377)
Q Consensus 798 --------------~~~~~g~~~~~l~~~~ni~~~------~~i---------------------~~s~~~~~~~----- 831 (1377)
.+...++.+.-......++.. ... ..++......
T Consensus 991 F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl 1070 (1958)
T KOG0391|consen 991 FQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPL 1070 (1958)
T ss_pred cccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccccccc
Confidence 000000000000000000000 000 0000000000
Q ss_pred --CCC--------CCCCccccccccccCCChH-------HHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccc
Q 000642 832 --SDA--------SPVKSETFGFTHLMDLSPA-------EVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL 894 (1377)
Q Consensus 832 --~~~--------~~~~~~~~~~~~~~~ls~~-------e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 894 (1377)
..+ ........++..-.-+++. ....+..+.-...+...+....+..+...+..++.-.
T Consensus 1071 ~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~---- 1146 (1958)
T KOG0391|consen 1071 LRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN---- 1146 (1958)
T ss_pred ccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc----
Confidence 000 0000000000000000000 0000000000000000000011111111111111000
Q ss_pred cCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCC-----cchhhhhhHHHHHHHHHhhcccccccCCCCCCCCc
Q 000642 895 NENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDP-----CEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPIN 969 (1377)
Q Consensus 895 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 969 (1377)
.......+++-.+.......+ ........+..+.....++.....++|.+.+++..
T Consensus 1147 -------------------APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~pps 1207 (1958)
T KOG0391|consen 1147 -------------------APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPS 1207 (1958)
T ss_pred -------------------CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChh
Confidence 000000111100000000011 11112222222222233444455667777766654
Q ss_pred cc-cCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCc
Q 000642 970 VQ-CSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1377)
Q Consensus 970 ~~-C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~ 1048 (1377)
.. |....... +.++-+..+.+ + ++- +...+. +..- .--++-++.
T Consensus 1208 lra~~ppp~~~--------~r~r~~~~qlr--s----------------el~---p~~~~~-q~~~-----~r~lqFPel 1252 (1958)
T KOG0391|consen 1208 LRAPRPPPLYS--------HRMRILRQQLR--S----------------ELA---PYFQQR-QTTA-----PRLLQFPEL 1252 (1958)
T ss_pred hcCCCCCcccc--------hHHHHHHHHHH--H----------------Hhc---cccchh-hccc-----hhhhcCcch
Confidence 43 33211110 00100000000 0 000 000000 0000 000112233
Q ss_pred cccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1049 AKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1049 ~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
.-+.+|||||+.|..||.+|+.+|||||||+||++|||+||.||+++||.|+||||+++.++|+.++++||.|+.|||||
T Consensus 1253 rLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfI 1332 (1958)
T KOG0391|consen 1253 RLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFI 1332 (1958)
T ss_pred heeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCc
Q 000642 1129 LSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGH 1208 (1377)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~ 1208 (1377)
||||+||+|||||+||||||||+||||++|.||.||||||||||+|+|||||.++||||+|++++.+|+.|.+++|+||+
T Consensus 1333 LSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggd 1412 (1958)
T KOG0391|consen 1333 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGD 1412 (1958)
T ss_pred EeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHhHHHhh
Q 000642 1209 VQGDILAPEDVVSLL 1223 (1377)
Q Consensus 1209 ~~~~~l~~~di~~ll 1223 (1377)
|...+++..++.+||
T Consensus 1413 fTt~ff~q~ti~dLF 1427 (1958)
T KOG0391|consen 1413 FTTAFFKQRTIRDLF 1427 (1958)
T ss_pred ccHHHHhhhhHHHHh
Confidence 988888877777666
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.4e-113 Score=1048.63 Aligned_cols=489 Identities=43% Similarity=0.751 Sum_probs=431.3
Q ss_pred cCCchhcc-CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 428 QTPELFKG-SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 428 ~qP~~l~~-~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
.||..++| +||+||+.|||||+.+|-++.|||||||||||||||+|+||.+|...+.+.||||||||.|++.+|+.||.
T Consensus 361 ~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~ 440 (1373)
T KOG0384|consen 361 KQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFE 440 (1373)
T ss_pred cCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHH
Confidence 57877775 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHH
Q 000642 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1377)
Q Consensus 507 kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~ka 586 (1377)
.|+ ++++++|+|+...|..++.+--...-.++.-.|+++||||+++..|...|..++|.++++||||++||..|+.+..
T Consensus 441 ~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~ 519 (1373)
T KOG0384|consen 441 TWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYES 519 (1373)
T ss_pred HHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHH
Confidence 999 9999999999999999887632211112334799999999999999999999999999999999999999999999
Q ss_pred HHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHh
Q 000642 587 LLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRV 666 (1377)
Q Consensus 587 l~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~ 666 (1377)
|..|...||||+||||+|||+.|||||||||||+-|++.++|..-|.. -++.+++.||.+|+||||||+
T Consensus 520 l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-----------~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 520 LNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-----------ETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred HHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-----------hhHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999997732 267889999999999999999
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCc
Q 000642 667 KKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSS 746 (1377)
Q Consensus 667 KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s 746 (1377)
|+||++.||+|.|.++.|+||+.|+.+|..|..+- ...|-.+..|. ..+|+|+||.||||||||+||..++..
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN-~~~LtKG~~g~-----~~~lLNimmELkKccNHpyLi~gaee~- 661 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKN-FSALTKGAKGS-----TPSLLNIMMELKKCCNHPYLIKGAEEK- 661 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhh-HHHHhccCCCC-----CchHHHHHHHHHHhcCCccccCcHHHH-
Confidence 99999999999999999999999999999998762 23333333222 278999999999999999998644200
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhh
Q 000642 747 YLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIF 826 (1377)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~ 826 (1377)
+...
T Consensus 662 --------------------------------------------------------------------------~~~~-- 665 (1373)
T KOG0384|consen 662 --------------------------------------------------------------------------ILGD-- 665 (1373)
T ss_pred --------------------------------------------------------------------------HHHh--
Confidence 0000
Q ss_pred hccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhh
Q 000642 827 SLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRA 906 (1377)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~ 906 (1377)
+. + +.
T Consensus 666 -----------------------------------------------------------~~-----~----~~------- 670 (1373)
T KOG0384|consen 666 -----------------------------------------------------------FR-----D----KM------- 670 (1373)
T ss_pred -----------------------------------------------------------hh-----h----cc-------
Confidence 00 0 00
Q ss_pred hhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCcccccccccccc
Q 000642 907 VTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQH 986 (1377)
Q Consensus 907 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~ 986 (1377)
...
T Consensus 671 -----------------------------------~d~------------------------------------------ 673 (1373)
T KOG0384|consen 671 -----------------------------------RDE------------------------------------------ 673 (1373)
T ss_pred -----------------------------------hHH------------------------------------------
Confidence 000
Q ss_pred chhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHH
Q 000642 987 DPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLK 1066 (1377)
Q Consensus 987 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~ 1066 (1377)
-...||..||||..||.||.
T Consensus 674 ------------------------------------------------------------~L~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384|consen 674 ------------------------------------------------------------ALQALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred ------------------------------------------------------------HHHHHHHhcCcEEeHHHHHH
Confidence 00123567999999999999
Q ss_pred HHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcc-CCCceEEEEeccccccccCcCcCCE
Q 000642 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADT 1145 (1377)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLLSTrAGGlGINLTaAdt 1145 (1377)
+|++.||||||||||++|||||++||..++|+|-||||+++.+-|+.+|+.|+. +++-|||||||||||+||||++|||
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADT 773 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADT 773 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccce
Confidence 999999999999999999999999999999999999999999999999999997 7789999999999999999999999
Q ss_pred EEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcc-----cCCCCCHHhHH
Q 000642 1146 VIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHV-----QGDILAPEDVV 1220 (1377)
Q Consensus 1146 VIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~-----~~~~l~~~di~ 1220 (1377)
||+|||||||..|.|||.|||||||++.|.||||||+|||||.|++||+.|.-|..+||+-+.. ....++.+++.
T Consensus 774 VIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELs 853 (1373)
T KOG0384|consen 774 VIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELS 853 (1373)
T ss_pred EEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975442 33567778876
Q ss_pred Hhh
Q 000642 1221 SLL 1223 (1377)
Q Consensus 1221 ~ll 1223 (1377)
++|
T Consensus 854 aIL 856 (1373)
T KOG0384|consen 854 AIL 856 (1373)
T ss_pred HHH
Confidence 554
No 5
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.9e-110 Score=1007.00 Aligned_cols=598 Identities=41% Similarity=0.708 Sum_probs=504.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhHHHHhhhccCCC
Q 000642 250 RGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQELREAKRQQ----QRLNFLIQQTELYSHFMQNKSSS 325 (1377)
Q Consensus 250 k~~~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~~k~~~e~~e~~rq~----rkl~fli~qtely~hf~~~k~~~ 325 (1377)
+..+.|.++..+-++.|+...||+++..-.|.||+.+.++|.++|+..++-++ .+|.+|+.||+-|-.-++...+.
T Consensus 258 q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~ 337 (1157)
T KOG0386|consen 258 QLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKG 337 (1157)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHH
Confidence 34457888999999999999999999999999999999999999999988766 78999999999999988888876
Q ss_pred CCCCCCCCCCCCCCchhhhccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHhhhHHHhhhhc
Q 000642 326 QPSEVLPVGNDKPNDQELLLSSSEFEPGEEEDPEEAELKKEALKAAQNAVSKQKMLTNTFDTECSKLREAADTEAAMLDV 405 (1377)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~a~~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~ 405 (1377)
+..+. +......+...+ ++.+ . ++.++ .+..+ ..|-.-+
T Consensus 338 qk~~~-~~~~~~~d~~~i---~~~a--k--~~~~d-----~~~s~------------~~Yys~A---------------- 376 (1157)
T KOG0386|consen 338 QKSEN-PDANSASDISGI---SGSA--K--ADVDD-----HAESN------------GSYYSTA---------------- 376 (1157)
T ss_pred hhccc-cccchhhhhhhh---hhhh--c--chhhh-----hhhcc------------hhHHHhc----------------
Confidence 54320 000000000000 0000 0 00000 11100 0111000
Q ss_pred cccCCCCcccCCCCCCCC-CCcccCCchh-ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 406 SVAGSGNIDLHNPSTMPV-TSTVQTPELF-KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~-~~~v~qP~~l-~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.++ .....||.++ .|+|++||++||.||++||+++.|||||||||||||||+||+|+||+|.+
T Consensus 377 ---------------H~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K 441 (1157)
T KOG0386|consen 377 ---------------HPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK 441 (1157)
T ss_pred ---------------chhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc
Confidence 011 1235788877 46999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhcc
Q 000642 484 NIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRV 563 (1377)
Q Consensus 484 ~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~ 563 (1377)
+..||+|||||.|++.||..||.+|.|++..+.|.|++..|+.+.+.+. ...|+|++|||+.+..|...|.++
T Consensus 442 ~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir-------~gKFnVLlTtyEyiikdk~lLsKI 514 (1157)
T KOG0386|consen 442 QMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQR-------HGKFNVLLTTYEYIIKDKALLSKI 514 (1157)
T ss_pred ccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHh-------cccceeeeeeHHHhcCCHHHHhcc
Confidence 9999999999999999999999999999999999999999988876642 378999999999999999999999
Q ss_pred ceeEEEEcccccccCchhHHHHHHH-hccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccccc
Q 000642 564 KWQYMVLDEAQAIKSSNSIRWKTLL-SFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEH 642 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~r~kal~-~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~ 642 (1377)
.|.||||||+|+|||..|+....+. .+.+.+||||||||+||++.|||+||+|+.|.+|+|...|.+||+.|+.+-.+.
T Consensus 515 ~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek 594 (1157)
T KOG0386|consen 515 SWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEK 594 (1157)
T ss_pred CCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCc
Confidence 9999999999999999999999998 679999999999999999999999999999999999999999999999776532
Q ss_pred CCCcchH----HHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHh
Q 000642 643 GGTLNEH----QLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKK 718 (1377)
Q Consensus 643 ~~~lne~----ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~ 718 (1377)
..++++ .++|||.+|+||+|||.|++|+++||+|++.++.|+||..|+.+|..+.+.-.. +.+. ....+.
T Consensus 595 -~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l--~~d~---~~g~~g 668 (1157)
T KOG0386|consen 595 -VELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQL--LKDT---AKGKKG 668 (1157)
T ss_pred -ccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCC--CcCc---hhcccc
Confidence 233333 379999999999999999999999999999999999999999999998764211 1111 112344
Q ss_pred HHHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhh
Q 000642 719 ILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCS 798 (1377)
Q Consensus 719 ~~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~ 798 (1377)
+..|+|.+|||||+||||+||+..+.+.
T Consensus 669 ~k~L~N~imqLRKiCNHP~lf~~ve~~~---------------------------------------------------- 696 (1157)
T KOG0386|consen 669 YKPLFNTIMQLRKLCNHPYLFANVENSY---------------------------------------------------- 696 (1157)
T ss_pred chhhhhHhHHHHHhcCCchhhhhhcccc----------------------------------------------------
Confidence 6789999999999999999985211000
Q ss_pred cccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhh
Q 000642 799 AVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQF 878 (1377)
Q Consensus 799 ~~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~ 878 (1377)
T Consensus 697 -------------------------------------------------------------------------------- 696 (1157)
T KOG0386|consen 697 -------------------------------------------------------------------------------- 696 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhccccc
Q 000642 879 LDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYT 958 (1377)
Q Consensus 879 ~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1377)
++
T Consensus 697 ------------------------------------------------------~~------------------------ 698 (1157)
T KOG0386|consen 697 ------------------------------------------------------TL------------------------ 698 (1157)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred ccCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcC
Q 000642 959 FIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFG 1038 (1377)
Q Consensus 959 ~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~ 1038 (1377)
T Consensus 699 -------------------------------------------------------------------------------- 698 (1157)
T KOG0386|consen 699 -------------------------------------------------------------------------------- 698 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHh
Q 000642 1039 SCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDF 1118 (1377)
Q Consensus 1039 s~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~F 1118 (1377)
.+++..++..|||+..|+.+|.+|++-|||||+|||||+++|+||+||..++|+|+||||+|+.++|-+++..|
T Consensus 699 ------~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 699 ------HYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred ------ccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 00001235669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000642 1119 QH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKN 1197 (1377)
Q Consensus 1119 q~-~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~ 1197 (1377)
+. ++++|+|||||||||+|+||+.|||||+||+||||.+|+||.||||||||+++|.|+||++-++|||.|+.+|..|.
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl 852 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKL 852 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhc
Confidence 97 77899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccCC
Q 000642 1198 TVQQLVMTGGHVQGD 1212 (1377)
Q Consensus 1198 ~l~~~Vi~g~~~~~~ 1212 (1377)
.+...||..|.|...
T Consensus 853 ~~d~kviqag~fdn~ 867 (1157)
T KOG0386|consen 853 DVDGKVIQAGKFDNK 867 (1157)
T ss_pred CchHhhhhcccccCC
Confidence 999999999988653
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-108 Score=973.00 Aligned_cols=519 Identities=41% Similarity=0.694 Sum_probs=420.3
Q ss_pred ccCCchhc--cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 427 VQTPELFK--GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 427 v~qP~~l~--~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
..||+.|. ++|++||+.||+||.-+|.++++||||||||||||+|+|||++||.+..+ .||+|||||+|++.||.+|
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHHH
Confidence 45898886 59999999999999999999999999999999999999999999998654 7999999999999999999
Q ss_pred HHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhh---hhhhhhccceeEEEEcccccccCchh
Q 000642 505 ISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA---DEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1377)
Q Consensus 505 i~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~---d~~~l~~~~w~~VIlDEAH~iKN~~S 581 (1377)
|.+|||.++|..|+|+..+|..+|..+... ..+|+|++|||+.+.+ |.++|++.+|+|||.||+|.+||..|
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~-----~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S 541 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKN-----KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS 541 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhcc-----CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch
Confidence 999999999999999999999999876532 2389999999999965 67889999999999999999999999
Q ss_pred HHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCH-HHHHHHHhhhccc-ccccCCCcchHHHHHHHHHHH
Q 000642 582 IRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSH-EQFNEWFSKGIES-HAEHGGTLNEHQLNRLHAILK 659 (1377)
Q Consensus 582 ~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~-~eF~ewFsk~ie~-~~~~~~~lne~ql~rLh~iLk 659 (1377)
.||+.|+.++++.||||||||+|||+.|||+||.|+||..|++. ..+...|...-.. .......+.++++.|-.+||+
T Consensus 542 eRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~ 621 (941)
T KOG0389|consen 542 ERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK 621 (941)
T ss_pred HHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999864 5677777643221 112223345567999999999
Q ss_pred HHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchh
Q 000642 660 PFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELF 739 (1377)
Q Consensus 660 pfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lf 739 (1377)
||+|||.|.+|.+.||+|+.++.+|+|+..|+.+|..+.+....... . ...+ ....+ -|++|||||++|||-||
T Consensus 622 PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~--~--~~~n-s~~~~-~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 622 PFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLN--E--VSKN-SELKS-GNVLMQLRKAANHPLLF 695 (941)
T ss_pred HHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcc--c--cccc-ccccc-chHHHHHHHHhcChhHH
Confidence 99999999999999999999999999999999999999877521110 0 0001 01111 67999999999999998
Q ss_pred ccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccch
Q 000642 740 ERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAE 819 (1377)
Q Consensus 740 er~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~ 819 (1377)
..- |. .+
T Consensus 696 R~~---------------------------Y~----------------------------------------------de 702 (941)
T KOG0389|consen 696 RSI---------------------------YT----------------------------------------------DE 702 (941)
T ss_pred HHh---------------------------cc----------------------------------------------HH
Confidence 521 00 00
Q ss_pred hhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCC
Q 000642 820 NVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHP 899 (1377)
Q Consensus 820 ~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~ 899 (1377)
.+.+... .++ ....+.+....++.++..
T Consensus 703 ~L~~mak-------------------------------------------~il-~e~ay~~~n~qyIfEDm~-------- 730 (941)
T KOG0389|consen 703 KLRKMAK-------------------------------------------RIL-NEPAYKKANEQYIFEDME-------- 730 (941)
T ss_pred HHHHHHH-------------------------------------------HHh-CchhhhhcCHHHHHHHHH--------
Confidence 0000000 000 000000000000000000
Q ss_pred CCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccc
Q 000642 900 DRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTY 979 (1377)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~ 979 (1377)
+.+..
T Consensus 731 ----------------------------------------------~msDf----------------------------- 735 (941)
T KOG0389|consen 731 ----------------------------------------------VMSDF----------------------------- 735 (941)
T ss_pred ----------------------------------------------hhhHH-----------------------------
Confidence 00000
Q ss_pred cccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCC-ccccccccchH
Q 000642 980 RMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFD-PAKLLTDSGKL 1058 (1377)
Q Consensus 980 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d-~~~li~~SgKL 1058 (1377)
.+.+++..+... +.|. ...++.+|||.
T Consensus 736 ---------elHqLc~~f~~~-------------------------------------------~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 736 ---------ELHQLCCQFRHL-------------------------------------------SKFQLKDDLWMDSGKC 763 (941)
T ss_pred ---------HHHHHHHhcCCC-------------------------------------------cccccCCchhhhhhhH
Confidence 000111101000 0000 12447889999
Q ss_pred HHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccccc
Q 000642 1059 QTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138 (1377)
Q Consensus 1059 ~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGI 1138 (1377)
.+|..||.+++..|||||||||||.||||||.+|..++|+|+||||+|...+|+++|++|+++.+||||||||+|||.||
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GI 843 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGI 843 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcc
Q 000642 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHV 1209 (1377)
Q Consensus 1139 NLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~ 1209 (1377)
|||+||+||+||.++||-.|.||-|||||+||||+|||||||+++||||.|++.|++|..|...+.+++.-
T Consensus 844 NLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 844 NLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888877654
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5e-102 Score=991.72 Aligned_cols=480 Identities=44% Similarity=0.806 Sum_probs=425.4
Q ss_pred ccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 427 v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
..||..+.++||+||+.||+||+.+|.+|.|||||||||||||+|+|++|+++....++.+|+|||||+|++.||.+||.
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~ 239 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIR 239 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHH
Q 000642 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1377)
Q Consensus 507 kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~ka 586 (1377)
+|+|.++++.|+|+...|..++..+. ....|+||||||+++.++...|..+.|++|||||||+|||..|.++++
T Consensus 240 kw~p~l~v~~~~G~~~eR~~~~~~~~------~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklska 313 (1033)
T PLN03142 240 RFCPVLRAVKFHGNPEERAHQREELL------VAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKT 313 (1033)
T ss_pred HHCCCCceEEEeCCHHHHHHHHHHHh------cccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHH
Confidence 99999999999999888776554322 124689999999999999999999999999999999999999999999
Q ss_pred HHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHh
Q 000642 587 LLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRV 666 (1377)
Q Consensus 587 l~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~ 666 (1377)
+..+.+++||+|||||+||++.|||+||+||+|+.|++...|.+||..+.. ......+.+||.+|+||||||+
T Consensus 314 lr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~-------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 314 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE-------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc-------cchHHHHHHHHHHhhHHHhhhh
Confidence 999999999999999999999999999999999999999999999986321 1234568899999999999999
Q ss_pred HhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCc
Q 000642 667 KKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSS 746 (1377)
Q Consensus 667 KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s 746 (1377)
|++|...||++.+.+|+|+||+.|+.+|+.+..... +.+.. + .....+++++|+||++||||.||...+...
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~--~~l~~--g----~~~~~LlnilmqLRk~cnHP~L~~~~ep~~ 458 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL--DVVNA--G----GERKRLLNIAMQLRKCCNHPYLFQGAEPGP 458 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHH--HHHhc--c----ccHHHHHHHHHHHHHHhCCHHhhhcccccC
Confidence 999999999999999999999999999999876531 11111 1 123568999999999999998864211000
Q ss_pred ccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhh
Q 000642 747 YLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIF 826 (1377)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~ 826 (1377)
+
T Consensus 459 ~------------------------------------------------------------------------------- 459 (1033)
T PLN03142 459 P------------------------------------------------------------------------------- 459 (1033)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhh
Q 000642 827 SLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRA 906 (1377)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~ 906 (1377)
T Consensus 460 -------------------------------------------------------------------------------- 459 (1033)
T PLN03142 460 -------------------------------------------------------------------------------- 459 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCcccccccccccc
Q 000642 907 VTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQH 986 (1377)
Q Consensus 907 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~ 986 (1377)
.
T Consensus 460 ----------------------------~--------------------------------------------------- 460 (1033)
T PLN03142 460 ----------------------------Y--------------------------------------------------- 460 (1033)
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred chhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHH
Q 000642 987 DPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLK 1066 (1377)
Q Consensus 987 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~ 1066 (1377)
.....++..|||+..|+.||.
T Consensus 461 -----------------------------------------------------------~~~e~lie~SgKl~lLdkLL~ 481 (1033)
T PLN03142 461 -----------------------------------------------------------TTGEHLVENSGKMVLLDKLLP 481 (1033)
T ss_pred -----------------------------------------------------------cchhHHhhhhhHHHHHHHHHH
Confidence 000011345899999999999
Q ss_pred HHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcc-CCCceEEEEeccccccccCcCcCCE
Q 000642 1067 RLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADT 1145 (1377)
Q Consensus 1067 ~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLLSTrAGGlGINLTaAdt 1145 (1377)
.++..||||||||||+.|+|+|+++|..+|+.|++|||+++.++|+.+|++|+. +++.+||||||+|||+|||||+||+
T Consensus 482 ~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~ 561 (1033)
T PLN03142 482 KLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADI 561 (1033)
T ss_pred HHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCE
Confidence 999999999999999999999999999999999999999999999999999987 4568999999999999999999999
Q ss_pred EEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccC-CCCCHHhHHHhhc
Q 000642 1146 VIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQG-DILAPEDVVSLLL 1224 (1377)
Q Consensus 1146 VIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~-~~l~~~di~~ll~ 1224 (1377)
||+||+||||+.+.|||||||||||+++|+|||||++|||||+|++++..|..+...|+++|.... ..++.+++.+++.
T Consensus 562 VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 562 VILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVR 641 (1033)
T ss_pred EEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876532 3466777777663
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-101 Score=916.48 Aligned_cols=491 Identities=35% Similarity=0.609 Sum_probs=424.6
Q ss_pred cccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 426 TVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 426 ~v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
....|..+.+.|++||..||+||.+||.++.||||+||||||||||+||||+.|.......+|.|||||+++++||..||
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~ 274 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEF 274 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999998856669999999999999999999
Q ss_pred HHHCCCCeeEeecCChhh-hHHH---hhccCccccc-ccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCch
Q 000642 506 SRFCPDLKTLPYWGGLQE-RMVL---RKNINPKRLY-RRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1377)
Q Consensus 506 ~kf~p~l~vl~y~Gs~~~-rk~l---rk~~~~k~l~-~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~ 580 (1377)
.+|+|.++|.+|||+... |... -++++. .+. .....-+|+||||+.+......+..+.|+|||+||+|+|||++
T Consensus 275 ~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~-~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 275 QTWWPPFRVFILHGTGSGARYDASHSSHKKDK-LLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred HHhCcceEEEEEecCCcccccccchhhhhhhh-hheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCc
Confidence 999999999999997652 1100 011110 010 1123568999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHH-----HHHHH
Q 000642 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQ-----LNRLH 655 (1377)
Q Consensus 581 S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~q-----l~rLh 655 (1377)
|+.+.+|+.+++.+|++||||||||++.|||+|+.|+.|+.++++..|.+.|.-||..+...+...-+.+ ...|+
T Consensus 354 s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 354 SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776554322222 34599
Q ss_pred HHHHHHHhHHhHhhhhh-cCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhC
Q 000642 656 AILKPFMLRRVKKDVIS-ELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCN 734 (1377)
Q Consensus 656 ~iLkpfmLRR~KkdV~~-eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCn 734 (1377)
.+++||||||+|.||.. .||.|.|++++|.||+.|+.+|+++.+.-.+..++.+.. +++.-+--|||+||
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~---------~~l~Gi~iLrkICn 504 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKR---------NCLSGIDILRKICN 504 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCc---------cceechHHHHhhcC
Confidence 99999999999999998 999999999999999999999999987655555555432 22334556899999
Q ss_pred CcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhc
Q 000642 735 HPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFN 814 (1377)
Q Consensus 735 HP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~n 814 (1377)
||+|+.+.+..+.
T Consensus 505 HPdll~~~~~~~~------------------------------------------------------------------- 517 (923)
T KOG0387|consen 505 HPDLLDRRDEDEK------------------------------------------------------------------- 517 (923)
T ss_pred CcccccCcccccc-------------------------------------------------------------------
Confidence 9999764310000
Q ss_pred cccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccc
Q 000642 815 IFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL 894 (1377)
Q Consensus 815 i~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 894 (1377)
T Consensus 518 -------------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 518 -------------------------------------------------------------------------------- 517 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCC
Q 000642 895 NENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSD 974 (1377)
Q Consensus 895 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~ 974 (1377)
T Consensus 518 -------------------------------------------------------------------------------- 517 (923)
T KOG0387|consen 518 -------------------------------------------------------------------------------- 517 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccc
Q 000642 975 RNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTD 1054 (1377)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~ 1054 (1377)
..+|....+..
T Consensus 518 ---------------------------------------------------------------------~~~D~~g~~k~ 528 (923)
T KOG0387|consen 518 ---------------------------------------------------------------------QGPDYEGDPKR 528 (923)
T ss_pred ---------------------------------------------------------------------cCCCcCCChhh
Confidence 00000011356
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN-YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~-~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
|||+.+|..||..++..|+|||+|||-..|||+||.+|. ..||.|+|+||+|+...|+.+|++||.+..++||||+|++
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 999999999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDI 1213 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~~~ 1213 (1377)
||+|+|||+||+||+|||||||+.|.||.+||+||||+|+|+||||++.|||||.||.||..|..|.+.++.+... ..+
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q-~Rf 687 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ-RRF 687 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987653 245
Q ss_pred CCHHhHHHhh
Q 000642 1214 LAPEDVVSLL 1223 (1377)
Q Consensus 1214 l~~~di~~ll 1223 (1377)
+...++.+||
T Consensus 688 F~~~dl~dLF 697 (923)
T KOG0387|consen 688 FKGNDLHDLF 697 (923)
T ss_pred cccccHHHHh
Confidence 6666666666
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.2e-97 Score=904.78 Aligned_cols=501 Identities=36% Similarity=0.601 Sum_probs=422.7
Q ss_pred ccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcc------cCCcEEEEeCcccHHH
Q 000642 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN------IWGPFLVVAPASVLNN 500 (1377)
Q Consensus 427 v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~------i~gp~LIV~P~Sll~n 500 (1377)
...|-.++.+||.||.+||+||..|+..+.+|||||+||||||+|+|.++|.-..... ..-|.|||||.+|...
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGH 1045 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGH 1045 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhH
Confidence 4456668899999999999999999999999999999999999999999987654430 1248999999999999
Q ss_pred HHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCch
Q 000642 501 WADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1377)
Q Consensus 501 W~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~ 580 (1377)
|+.|+.+|+|-++|+.|.|.+.+|..+|... ...+|+||||+.+++|..||.++.|.|+||||+|-|||..
T Consensus 1046 W~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~---------~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~k 1116 (1549)
T KOG0392|consen 1046 WKSEVKKFFPFLKVLQYVGPPAERRELRDQY---------KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSK 1116 (1549)
T ss_pred HHHHHHHhcchhhhhhhcCChHHHHHHHhhc---------cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchH
Confidence 9999999999999999999999999888764 3468999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcch-----HHHHHHH
Q 000642 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNE-----HQLNRLH 655 (1377)
Q Consensus 581 S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne-----~ql~rLh 655 (1377)
++.|+++.++.+.||++|||||||||+.|||+|+.||||+.+++...|.+.|.|||-........-.+ -.+..||
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999776655443333 2478899
Q ss_pred HHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchH-hHHHHHHHHHHHHHhhC
Q 000642 656 AILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEK-KILNLMNIVIQLRKVCN 734 (1377)
Q Consensus 656 ~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~-~~~~l~nlvmqLRKvCn 734 (1377)
.-.=||||||+|.||.++||||+..+.||+||+.|+++|+.+..+.....-.....+....+ ....++..+.-+||.||
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999987732211111111111111 25778899999999999
Q ss_pred CcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhc
Q 000642 735 HPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFN 814 (1377)
Q Consensus 735 HP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~n 814 (1377)
||.|.-..- -|.+-
T Consensus 1277 HpaLvlt~~-------------------------------------hp~la----------------------------- 1290 (1549)
T KOG0392|consen 1277 HPALVLTPV-------------------------------------HPDLA----------------------------- 1290 (1549)
T ss_pred CcceeeCCC-------------------------------------cchHH-----------------------------
Confidence 998853110 00000
Q ss_pred cccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccc
Q 000642 815 IFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGEL 894 (1377)
Q Consensus 815 i~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 894 (1377)
.+... +
T Consensus 1291 -----~i~~~-------------------------------------------------------------l-------- 1296 (1549)
T KOG0392|consen 1291 -----AIVSH-------------------------------------------------------------L-------- 1296 (1549)
T ss_pred -----HHHHH-------------------------------------------------------------H--------
Confidence 00000 0
Q ss_pred cCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCC
Q 000642 895 NENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSD 974 (1377)
Q Consensus 895 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~ 974 (1377)
....+
T Consensus 1297 -------------------------------------------------~~~~~-------------------------- 1301 (1549)
T KOG0392|consen 1297 -------------------------------------------------AHFNS-------------------------- 1301 (1549)
T ss_pred -------------------------------------------------HHhhh--------------------------
Confidence 00000
Q ss_pred ccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccc
Q 000642 975 RNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTD 1054 (1377)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~ 1054 (1377)
. .| -+..
T Consensus 1302 ---------~---------------------------LH-------------------------------------di~h 1308 (1549)
T KOG0392|consen 1302 ---------S---------------------------LH-------------------------------------DIQH 1308 (1549)
T ss_pred ---------h---------------------------HH-------------------------------------Hhhh
Confidence 0 00 0223
Q ss_pred cchHHHHHHHHHHHh--------------hCCCeEEEEeccchHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHH
Q 000642 1055 SGKLQTLDILLKRLR--------------AENHRVLLFAQMTKMLNILEDYMNYR---KYRYLRLDGSSTIMDRRDMVRD 1117 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk--------------~~ghKVLIFSQ~t~mLDiLee~L~~~---g~~y~rLDGstk~edR~~~V~~ 1117 (1377)
|+||.+|.+||.+.- ..+||||||||+..|+|+++.-|-.. .+.|+|||||+.+.+|+++|.+
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 555555555555532 24799999999999999999998554 6789999999999999999999
Q ss_pred hccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000642 1118 FQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKN 1197 (1377)
Q Consensus 1118 Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~ 1197 (1377)
||+||.|.|+||.|.+||+|+|||+||||||||.||||..|.|||||||||||+|.|.|||||++||+||+|+-.|+-|.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKm 1468 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKM 1468 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccCCCCCHHhHHHhhc
Q 000642 1198 TVQQLVMTGGHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1198 ~l~~~Vi~g~~~~~~~l~~~di~~ll~ 1224 (1377)
.+.+.||+..+.....+..+++.++|.
T Consensus 1469 nvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1469 NVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred HHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999888878888999999986
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-81 Score=705.43 Aligned_cols=560 Identities=28% Similarity=0.454 Sum_probs=430.3
Q ss_pred CcccCCchhccCcchhHHHHHHHHHHHHh-cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHH
Q 000642 425 STVQTPELFKGSLKEYQLKGLQWLVNCYE-QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWAD 503 (1377)
Q Consensus 425 ~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~-~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~ 503 (1377)
..+.||..|.-.|.|||++||.|+....+ .-.|||||||||+|||||+|||+.. +..+ .|+|||||.-.+.||.+
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~r--a~tLVvaP~VAlmQW~n 248 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDR--APTLVVAPTVALMQWKN 248 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--cccc--CCeeEEccHHHHHHHHH
Confidence 56789999999999999999999998887 4558999999999999999999865 3322 58999999999999999
Q ss_pred HHHHHCC-CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh-----------------hhhhhccce
Q 000642 504 EISRFCP-DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD-----------------EKYFRRVKW 565 (1377)
Q Consensus 504 Ei~kf~p-~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d-----------------~~~l~~~~w 565 (1377)
||.+++. .+++++|||......+ + ....||||+|||..+-+. ...|..++|
T Consensus 249 EI~~~T~gslkv~~YhG~~R~~ni-------k----el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~ 317 (791)
T KOG1002|consen 249 EIERHTSGSLKVYIYHGAKRDKNI-------K----ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKF 317 (791)
T ss_pred HHHHhccCceEEEEEecccccCCH-------H----HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhcee
Confidence 9999984 6899999997543321 1 236799999999998542 345788999
Q ss_pred eEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCH--------------------
Q 000642 566 QYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSH-------------------- 625 (1377)
Q Consensus 566 ~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~-------------------- 625 (1377)
.+|||||||.||+.+|..++++..+.+.+||+|||||+||.+.|||+|+.||...+|.-+
T Consensus 318 ~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c 397 (791)
T KOG1002|consen 318 YRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHC 397 (791)
T ss_pred eeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccC
Confidence 999999999999999999999999999999999999999999999999999988876411
Q ss_pred -----------HHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHhHhhhhhc--CCCceEEEEEecCCHHHHH
Q 000642 626 -----------EQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISE--LTTKTEVMVHCKLSSRQQA 692 (1377)
Q Consensus 626 -----------~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~KkdV~~e--LP~K~E~~v~c~LT~~Qr~ 692 (1377)
..|+....+||......+ .........|.+|+-+||||+|-.-..+ |||.+..+-.--|+..+..
T Consensus 398 ~~c~h~~m~h~~~~n~~mlk~IqkfG~eG--pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D 475 (791)
T KOG1002|consen 398 DHCSHNIMQHTCFFNHFMLKPIQKFGVEG--PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKD 475 (791)
T ss_pred CcccchhhhhhhhhcccccccchhhcccC--chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHH
Confidence 235555567776554332 2344566889999999999999765444 7899888888889999999
Q ss_pred HHHHHHHHH--hhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccc
Q 000642 693 FYQAIKNKI--SLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISF 770 (1377)
Q Consensus 693 lY~~l~~~i--s~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1377)
+|+.+.... .....++ ...--.++.+++.++.++||+..||+|+....
T Consensus 476 ~YeSLY~dSkrkfntyie---eGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~--------------------------- 525 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIE---EGVVLNNYANIFTLITRMRQAADHPDLVLYSA--------------------------- 525 (791)
T ss_pred HHHHHHHhhHHhhhhHHh---hhhhhhhHHHHHHHHHHHHHhccCcceeeehh---------------------------
Confidence 999875431 1111111 12234678999999999999999999853210
Q ss_pred cCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCC
Q 000642 771 SGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDL 850 (1377)
Q Consensus 771 ~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~l 850 (1377)
..|... ++
T Consensus 526 --~~n~~~----------------------------------------en------------------------------ 533 (791)
T KOG1002|consen 526 --NANLPD----------------------------------------EN------------------------------ 533 (791)
T ss_pred --hcCCCc----------------------------------------cc------------------------------
Confidence 000000 00
Q ss_pred ChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCC
Q 000642 851 SPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGP 930 (1377)
Q Consensus 851 s~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 930 (1377)
.+ ...++-
T Consensus 534 ----------------------------------------k~--------------------------------~~~C~l 541 (791)
T KOG1002|consen 534 ----------------------------------------KG--------------------------------EVECGL 541 (791)
T ss_pred ----------------------------------------cC--------------------------------ceeecc
Confidence 00 000111
Q ss_pred CCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccchhHHHHhhhccc-cccCCCCCCC
Q 000642 931 GYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFAR-TSENIGPRKP 1009 (1377)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 1009 (1377)
++++.++.+. ..++|.+|+-|+..+.. .++.++-.+|
T Consensus 542 c~d~aed~i~------------------------------------------s~ChH~FCrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 542 CHDPAEDYIE------------------------------------------SSCHHKFCRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred cCChhhhhHh------------------------------------------hhhhHHHHHHHHHHHHHhhhcccCCCCc
Confidence 1111111111 12355666666643321 1222223333
Q ss_pred CCCcchhhhhhccCCCcchhhh-hhhhhcCCCCCCCCCCccccccccchHHHHHHHHHHHhhCC--CeEEEEeccchHHH
Q 000642 1010 GGPHQLIQEIDSELPVAKPALQ-LTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAEN--HRVLLFAQMTKMLN 1086 (1377)
Q Consensus 1010 ~~~~~~~~el~~~~~~~~~~~~-~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~g--hKVLIFSQ~t~mLD 1086 (1377)
.+...+ .+..+.+.+. .....|...+.+++++.+ -+..|.|+++|.+-|..+.+.+ -|.|||||||.|||
T Consensus 580 ~C~i~L------siDlse~alek~~l~~Fk~sSIlnRinm~-~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLD 652 (791)
T KOG1002|consen 580 VCHIGL------SIDLSEPALEKTDLKGFKASSILNRINMD-DWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLD 652 (791)
T ss_pred cccccc------cccccchhhhhcchhhhhhHHHhhhcchh-hhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHH
Confidence 332111 1223333333 233445444444555544 3567999999999999998764 59999999999999
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchh
Q 000642 1087 ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAH 1166 (1377)
Q Consensus 1087 iLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaH 1166 (1377)
+|+..|...|+.++.|+|||+...|...++.|.++++|.|||+|.+|||+.||||.|++|+++||||||+++.||+||+|
T Consensus 653 Li~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiH 732 (791)
T KOG1002|consen 653 LIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIH 732 (791)
T ss_pred HHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHhHHHhhc
Q 000642 1167 RLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1167 RiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~~~l~~~di~~ll~ 1224 (1377)
||||.|||.|.|||.++|||++|+..++.|..++...|++.......++++|+.-||.
T Consensus 733 RIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 733 RIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred hhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999998876667888998877764
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-78 Score=739.73 Aligned_cols=502 Identities=32% Similarity=0.500 Sum_probs=404.2
Q ss_pred CcccCCchhccCcchhHHHHHHHHHHHHh------cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCC----cEEEEeC
Q 000642 425 STVQTPELFKGSLKEYQLKGLQWLVNCYE------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG----PFLVVAP 494 (1377)
Q Consensus 425 ~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~------~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~g----p~LIV~P 494 (1377)
+.+..-+.+...|||||.+|++||..+.. ...|||+||+||+|||.|+|+||..+...++.++ ..|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 34455567888999999999999987652 3457899999999999999999999998877643 3499999
Q ss_pred cccHHHHHHHHHHHCC--CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcc
Q 000642 495 ASVLNNWADEISRFCP--DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDE 572 (1377)
Q Consensus 495 ~Sll~nW~~Ei~kf~p--~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDE 572 (1377)
++|+.||.+||.+|.. .+..+.++|...+.-.-.+.|- .+....-..-|+|.||+++..+...+....+++||+||
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil--~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDE 384 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSIL--FLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDE 384 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHH--HhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECC
Confidence 9999999999999986 5778888887665100000000 01112234569999999999999999999999999999
Q ss_pred cccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcc----h
Q 000642 573 AQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLN----E 648 (1377)
Q Consensus 573 AH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~ln----e 648 (1377)
+|++||..|..+++|..+++++|++|||||+||++.|++++|+|+.|+.+++..+|...|..++......+.... +
T Consensus 385 GHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 385 GHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred CCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999988665444333 3
Q ss_pred HHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHH
Q 000642 649 HQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQ 728 (1377)
Q Consensus 649 ~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmq 728 (1377)
..++.|..+...|++||+-....+.||++.|++|.|.+|+.|..+|..+.... ....+.. ..+..+..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~-----------~~l~~~~~ 532 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG-----------YALELITK 532 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc-----------chhhHHHH
Confidence 34899999999999999998999999999999999999999999999987753 2211111 15667889
Q ss_pred HHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHH
Q 000642 729 LRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISREL 808 (1377)
Q Consensus 729 LRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~ 808 (1377)
|.++||||.|+...+.....
T Consensus 533 L~k~cnhP~L~~~~~~~~~e------------------------------------------------------------ 552 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKE------------------------------------------------------------ 552 (776)
T ss_pred HHHHhcCHHhhccccccccc------------------------------------------------------------
Confidence 99999999986311100000
Q ss_pred HhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhh
Q 000642 809 FQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFME 888 (1377)
Q Consensus 809 l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~ 888 (1377)
...+ .+.
T Consensus 553 ------------------------------~~~~--------~~~----------------------------------- 559 (776)
T KOG0390|consen 553 ------------------------------KAFK--------NPA----------------------------------- 559 (776)
T ss_pred ------------------------------cccc--------ChH-----------------------------------
Confidence 0000 000
Q ss_pred hhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCC
Q 000642 889 AMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPI 968 (1377)
Q Consensus 889 ~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 968 (1377)
.+..+.
T Consensus 560 ---------------------~~~~~~----------------------------------------------------- 565 (776)
T KOG0390|consen 560 ---------------------LLLDPG----------------------------------------------------- 565 (776)
T ss_pred ---------------------hhhccc-----------------------------------------------------
Confidence 000000
Q ss_pred ccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCc
Q 000642 969 NVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1377)
Q Consensus 969 ~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~ 1048 (1377)
.+. + .
T Consensus 566 -------------------------------------------------------------------~~~----~----~ 570 (776)
T KOG0390|consen 566 -------------------------------------------------------------------KLK----L----D 570 (776)
T ss_pred -------------------------------------------------------------------ccc----c----c
Confidence 000 0 0
Q ss_pred cccccccchHHHHHHHHHHHhhC-CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCc-eE
Q 000642 1049 AKLLTDSGKLQTLDILLKRLRAE-NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDI-FV 1126 (1377)
Q Consensus 1049 ~~li~~SgKL~~L~~LL~~Lk~~-ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di-~V 1126 (1377)
..-...||||..|+.+|...++. ..++++-++++.++|+++..+..+||.++||||++++.+|+.+|+.||+.++. ||
T Consensus 571 ~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~v 650 (776)
T KOG0390|consen 571 AGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFV 650 (776)
T ss_pred cccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceE
Confidence 00013489999999999776654 36788888899999999999999999999999999999999999999996665 99
Q ss_pred EEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcC
Q 000642 1127 FLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1206 (1377)
Q Consensus 1127 fLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g 1206 (1377)
||+|++|||+||||++|++||+||+||||++|+|||+||||.||+|+|+|||||+.|||||+|++|+..|..|..+|++.
T Consensus 651 fLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~ 730 (776)
T KOG0390|consen 651 FLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDE 730 (776)
T ss_pred EEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcccCCCCCHHhHHHh
Q 000642 1207 GHVQGDILAPEDVVSL 1222 (1377)
Q Consensus 1207 ~~~~~~~l~~~di~~l 1222 (1377)
.......+..+++..+
T Consensus 731 ~~~~~~~~~~~~~~~l 746 (776)
T KOG0390|consen 731 EEDVEKHFFTEDLKTL 746 (776)
T ss_pred ccccccccchHHHHHH
Confidence 7655444443344333
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=4.3e-77 Score=707.08 Aligned_cols=599 Identities=28% Similarity=0.392 Sum_probs=415.7
Q ss_pred CCcccCCchhccCcchhHHHHHHHHHHHH---------hcCCCEEEEeCCCCcHHHHHHHHHHHHH-HhcccCCcEEEEe
Q 000642 424 TSTVQTPELFKGSLKEYQLKGLQWLVNCY---------EQGLNGILADEMGLGKTIQAMAFLAHLA-EEKNIWGPFLVVA 493 (1377)
Q Consensus 424 ~~~v~qP~~l~~~Lr~YQlkGL~WL~~ly---------~~g~nGILADEMGLGKTIQsIAlLa~L~-e~~~i~gp~LIV~ 493 (1377)
...|+.|..|...|+|||..|++||+.+. ..|.|||||+-||||||+|+|+||..+. +..-...+.||||
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~ 735 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVC 735 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEc
Confidence 45688899999999999999999998653 3789999999999999999999997654 3333457899999
Q ss_pred CcccHHHHHHHHHHHCCCCeeE----ee----cCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh---------
Q 000642 494 PASVLNNWADEISRFCPDLKTL----PY----WGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--------- 556 (1377)
Q Consensus 494 P~Sll~nW~~Ei~kf~p~l~vl----~y----~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d--------- 556 (1377)
|.++++||..||.+|.+++... +| +.....|..+-+.|. ..-.|+|+.|++++.-
T Consensus 736 PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~--------~~ggVmIiGYdmyRnLa~gr~vk~r 807 (1567)
T KOG1015|consen 736 PLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ--------EDGGVMIIGYDMYRNLAQGRNVKSR 807 (1567)
T ss_pred chHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH--------hcCCEEEEehHHHHHHhcccchhhh
Confidence 9999999999999999964332 22 122344555555554 2337999999998652
Q ss_pred ------hhhhhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH
Q 000642 557 ------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNE 630 (1377)
Q Consensus 557 ------~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~e 630 (1377)
.++|..-..|+|||||||.|||..|..++++..+.|++||+|||||+|||+.|++++++|+.|+++++..+|.+
T Consensus 808 k~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrN 887 (1567)
T KOG1015|consen 808 KLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRN 887 (1567)
T ss_pred HHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHH
Confidence 34556668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccCCCcch-----HHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhh
Q 000642 631 WFSKGIESHAEHGGTLNE-----HQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAG 705 (1377)
Q Consensus 631 wFsk~ie~~~~~~~~lne-----~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ 705 (1377)
.|.+||+++...+++.-+ +..+.||..|+.|+-|+.-.-+...||||+|++|++.||+.|+.||+.+.+.. ...
T Consensus 888 RFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~-~~~ 966 (1567)
T KOG1015|consen 888 RFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHL-TGV 966 (1567)
T ss_pred hhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhc-ccc
Confidence 999999999887766433 33566999999999999999999999999999999999999999999998732 111
Q ss_pred hcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhh
Q 000642 706 LFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIV 785 (1377)
Q Consensus 706 ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~ 785 (1377)
--+. ....+...+|+.-..-|+++.+||..+.-...++- ..+++...+ +..++
T Consensus 967 G~d~---eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~e-----------nkR~~sedd-------------m~~fi 1019 (1567)
T KOG1015|consen 967 GNDS---EGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKE-----------NKRYFSEDD-------------MDEFI 1019 (1567)
T ss_pred CCcc---ccccchhhhHHHHHHHHHHHhcCCCceeechhhhh-----------hcccccccc-------------hhccc
Confidence 0000 01112446788888889999999986532211000 000000000 00000
Q ss_pred HHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhh-ccCCCCCCCCCccccccccccCCChHHHHHhhhhhhH
Q 000642 786 HQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFS-LASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFM 864 (1377)
Q Consensus 786 ~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~-~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~ 864 (1377)
.++. ++... .+. ...-...-.+ ..+.-+........-+ .-++
T Consensus 1020 ~D~s---de~e~-----s~~------------s~d~~~~~ks~~~s~~Desss~~~~~g--------~~ev--------- 1062 (1567)
T KOG1015|consen 1020 ADDS---DETEM-----SLS------------SDDYTKKKKSGKKSKKDESSSGSGSDG--------DVEV--------- 1062 (1567)
T ss_pred cCCC---ccccc-----ccc------------ccchhhcccccccccccccccccccCC--------chhh---------
Confidence 0000 00000 000 0000000000 0000000000000000 0000
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHH
Q 000642 865 ERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQE 944 (1377)
Q Consensus 865 e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 944 (1377)
. ..|.+..... .+++.+ .+|. ++-.
T Consensus 1063 ---~---k~k~rk~r~~--------~~~~~~-------------------------------~~g~--~~D~-------- 1087 (1567)
T KOG1015|consen 1063 ---I---KVKNRKSRGG--------GEGNVD-------------------------------ETGN--NPDV-------- 1087 (1567)
T ss_pred ---h---hhhhhhcccc--------ccCccc-------------------------------ccCC--Ccch--------
Confidence 0 0000000000 000000 0000 0000
Q ss_pred HHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCC
Q 000642 945 RLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELP 1024 (1377)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~ 1024 (1377)
.+.++. +.+-.+.......|.+...++++-+
T Consensus 1088 ----~l~ll~-----------------------------------------dlag~~s~~~d~ppew~kd~v~e~d---- 1118 (1567)
T KOG1015|consen 1088 ----SLKLLE-----------------------------------------DLAGSSSNPSDPPPEWYKDFVTEAD---- 1118 (1567)
T ss_pred ----HHHHhh-----------------------------------------cccccccCCCCCchHhHHhhhhhhh----
Confidence 000000 0000000000001111111221111
Q ss_pred CcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHh----------
Q 000642 1025 VAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY---------- 1094 (1377)
Q Consensus 1025 ~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~---------- 1094 (1377)
...+..||||-.|.++|...-+-|+|+|||||....||+|+.||.+
T Consensus 1119 ------------------------~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d 1174 (1567)
T KOG1015|consen 1119 ------------------------AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKD 1174 (1567)
T ss_pred ------------------------hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccc
Confidence 1225679999999999999999999999999999999999999964
Q ss_pred ------------CCCcEEEecCCCCHHHHHHHHHHhccC--CCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhH
Q 000642 1095 ------------RKYRYLRLDGSSTIMDRRDMVRDFQHR--SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQ 1160 (1377)
Q Consensus 1095 ------------~g~~y~rLDGstk~edR~~~V~~Fq~~--~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~Q 1160 (1377)
+|..|+|||||+....|..++..||+- -..++||+||||||+||||.|||+||+||-.|||+.|.|
T Consensus 1175 ~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQ 1254 (1567)
T KOG1015|consen 1175 KPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQ 1254 (1567)
T ss_pred cccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchH
Confidence 366899999999999999999999973 356789999999999999999999999999999999999
Q ss_pred hhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCHHhHHHhhc
Q 000642 1161 AMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1161 AmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~~~l~~~di~~ll~ 1224 (1377)
+|-|++|+||||||+|||||+.||+||+||+|+..|+.+.-.|++..++.. .++..|+..|+.
T Consensus 1255 SIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~R-hy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1255 SIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVER-HYTMNELTELYT 1317 (1567)
T ss_pred HHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHH-HhhHhhhHHHhh
Confidence 999999999999999999999999999999999999999999998776653 456667777663
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.9e-76 Score=690.80 Aligned_cols=523 Identities=30% Similarity=0.487 Sum_probs=404.0
Q ss_pred CcccCCchhccCcchhHHHHHHHHHHHHhc-CCCEEEEeCCCCcHHHHHHHHHHHHHHhc-------ccCCcEEEEeCcc
Q 000642 425 STVQTPELFKGSLKEYQLKGLQWLVNCYEQ-GLNGILADEMGLGKTIQAMAFLAHLAEEK-------NIWGPFLVVAPAS 496 (1377)
Q Consensus 425 ~~v~qP~~l~~~Lr~YQlkGL~WL~~ly~~-g~nGILADEMGLGKTIQsIAlLa~L~e~~-------~i~gp~LIV~P~S 496 (1377)
+..+.|..+.+.|.|||..|+.||.....+ +.||||||+||||||..+||+|.+-.... ....++|||||+|
T Consensus 314 ~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 314 DLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred cccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 345679999999999999999999987755 56899999999999999999998765431 1223699999999
Q ss_pred cHHHHHHHHHHHCC--CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhh----------hhhhhhccc
Q 000642 497 VLNNWADEISRFCP--DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----------DEKYFRRVK 564 (1377)
Q Consensus 497 ll~nW~~Ei~kf~p--~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~----------d~~~l~~~~ 564 (1377)
+++||..|+.+-.. -+.|++|||... +.+..+.+ ..||||||||..+.. +...|.++.
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~------r~i~~~~L----~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~ 463 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK------REISAKEL----RKYDVVITTYNLVANKPDDELEEGKNSSPLARIA 463 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc------ccCCHHHH----hhcceEEEeeeccccCCchhhhcccCccHHHHhh
Confidence 99999999987653 489999999764 22333333 679999999999987 245688999
Q ss_pred eeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCC
Q 000642 565 WQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGG 644 (1377)
Q Consensus 565 w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~ 644 (1377)
|.+|||||||.|||+.|+-+.+++.+.+.+||+||||||||++.|+|+||.||...+|++...|.+|...+-..+
T Consensus 464 W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----- 538 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----- 538 (901)
T ss_pred HHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999876432211
Q ss_pred CcchHHHHHHHHHHHHHHhHHhHhhhhh-----cCCCceEEEEEecCCHHHHHHHHHHHHHHhh--hh-hcc-----cc-
Q 000642 645 TLNEHQLNRLHAILKPFMLRRVKKDVIS-----ELTTKTEVMVHCKLSSRQQAFYQAIKNKISL--AG-LFD-----NS- 710 (1377)
Q Consensus 645 ~lne~ql~rLh~iLkpfmLRR~KkdV~~-----eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~--~~-ll~-----~~- 710 (1377)
-.||.-+.+++||||+|..+.. .||.+..+++.++|+..+...|+.+...... .. +.. +.
T Consensus 539 ------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~ 612 (901)
T KOG4439|consen 539 ------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDG 612 (901)
T ss_pred ------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 3689999999999999999887 7999999999999999999999987543210 00 000 00
Q ss_pred --------------------------cCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCC
Q 000642 711 --------------------------RGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGE 764 (1377)
Q Consensus 711 --------------------------~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~ 764 (1377)
.++.+......++.++++|||+|+||.+........
T Consensus 613 ~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~------------------ 674 (901)
T KOG4439|consen 613 GYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPE------------------ 674 (901)
T ss_pred CccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHH------------------
Confidence 011122345568899999999999996643211000
Q ss_pred cccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCcccccc
Q 000642 765 LEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGF 844 (1377)
Q Consensus 765 ~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~ 844 (1377)
++...|..+
T Consensus 675 --~~~~~g~~~--------------------------------------------------------------------- 683 (901)
T KOG4439|consen 675 --EFQMNGGDD--------------------------------------------------------------------- 683 (901)
T ss_pred --HhhhcCcch---------------------------------------------------------------------
Confidence 000000000
Q ss_pred ccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhh
Q 000642 845 THLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRR 924 (1377)
Q Consensus 845 ~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 924 (1377)
+..+ .+ + ...+.+. ..
T Consensus 684 ------sde~--~~------e-----------------~~~l~el---------------------------------~k 699 (901)
T KOG4439|consen 684 ------SDEE--QL------E-----------------EDNLAEL---------------------------------EK 699 (901)
T ss_pred ------hhhh--hh------h-----------------hhHHHhh---------------------------------hh
Confidence 0000 00 0 0000000 00
Q ss_pred hccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCC
Q 000642 925 KFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENI 1004 (1377)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1004 (1377)
... ..|++-++. .
T Consensus 700 ~~~------------------------------------------T~~~~D~~e-------------------------d 712 (901)
T KOG4439|consen 700 NDE------------------------------------------TDCSDDNCE-------------------------D 712 (901)
T ss_pred ccc------------------------------------------ccccccccc-------------------------c
Confidence 000 001110000 0
Q ss_pred CCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHHHH-hhCCCeEEEEeccch
Q 000642 1005 GPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRL-RAENHRVLLFAQMTK 1083 (1377)
Q Consensus 1005 ~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~L-k~~ghKVLIFSQ~t~ 1083 (1377)
+|. . .+.++| + ....|.|+..+...|..+ ....+||+|-||||.
T Consensus 713 ~p~------------------~-----~~~q~F---------e---~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwts 757 (901)
T KOG4439|consen 713 LPT------------------A-----FPDQAF---------E---PDRPSCKIAMVLEILETILTSSKEKVVIVSQWTS 757 (901)
T ss_pred ccc------------------c-----chhhhc---------c---cccchhHHHHHHHHHHHHhhcccceeeehhHHHH
Confidence 000 0 001111 1 134588999999998887 556799999999999
Q ss_pred HHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhh
Q 000642 1084 MLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAM 1162 (1377)
Q Consensus 1084 mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~-di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAm 1162 (1377)
+|++++..|...|+.|..++|...+.+|+++|++|+... ..+|+|||.-|||+||||++|+|+|++|..|||+.++||.
T Consensus 758 vLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAc 837 (901)
T KOG4439|consen 758 VLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQAC 837 (901)
T ss_pred HHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHH
Confidence 999999999999999999999999999999999999854 5999999999999999999999999999999999999999
Q ss_pred hchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcc-cCCCCCHHhHHHhh
Q 000642 1163 DRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHV-QGDILAPEDVVSLL 1223 (1377)
Q Consensus 1163 dRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~-~~~~l~~~di~~ll 1223 (1377)
||++|+||+|+|+||||+|+||||+||...+..|..+...|+.|... ....++..|+..||
T Consensus 838 DRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 838 DRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred HHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999997665 34678888888776
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.6e-75 Score=766.25 Aligned_cols=505 Identities=39% Similarity=0.670 Sum_probs=423.4
Q ss_pred chhccCcchhHHHHHHHHH-HHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCcccHHHHHHHHHHH
Q 000642 431 ELFKGSLKEYQLKGLQWLV-NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 431 ~~l~~~Lr~YQlkGL~WL~-~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
..+.++|++||++|++||. .++..+.||||||+||||||+|+|+++.++.+.... .+|+|||||.+++.||.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5667899999999999999 899999999999999999999999999997766655 58999999999999999999999
Q ss_pred CCCCe-eEeecCChhh----hHHHhhccCcccccccCCCeeEEEEechhhhh---hhhhhhccceeEEEEcccccccCch
Q 000642 509 CPDLK-TLPYWGGLQE----RMVLRKNINPKRLYRRDAGFHILITSYQLLVA---DEKYFRRVKWQYMVLDEAQAIKSSN 580 (1377)
Q Consensus 509 ~p~l~-vl~y~Gs~~~----rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~---d~~~l~~~~w~~VIlDEAH~iKN~~ 580 (1377)
.|.++ ++.|+|.... +..++....... ...|+|++|||+.+.+ +...+..+.|+++|+||||+|||..
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~ 488 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHL----VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ 488 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcc----cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh
Confidence 99999 9999998763 555555433111 2348999999999999 9999999999999999999999999
Q ss_pred hHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHH-hhcCCCCC-CHHHHHHHHhhhcccccccCC-CcchHHHHHHHHH
Q 000642 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLH-FIMPTLFD-SHEQFNEWFSKGIESHAEHGG-TLNEHQLNRLHAI 657 (1377)
Q Consensus 581 S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~-FL~P~lFd-s~~eF~ewFsk~ie~~~~~~~-~lne~ql~rLh~i 657 (1377)
|..++++..+++.++++|||||+||++.|||+|++ |++|.+++ +...|..||.+++......+. ......+.+|+.+
T Consensus 489 s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 489 SSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred hHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999 669999999999987765432 1123456679999
Q ss_pred HHHHHhHHhHhh--hhhcCCCceEEEEEecCCHHHHHHHHHHHHHH-hhhhhcccccCCcc---hH--hHHHHHHHHHHH
Q 000642 658 LKPFMLRRVKKD--VISELTTKTEVMVHCKLSSRQQAFYQAIKNKI-SLAGLFDNSRGHLN---EK--KILNLMNIVIQL 729 (1377)
Q Consensus 658 LkpfmLRR~Kkd--V~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~i-s~~~ll~~~~g~~~---~~--~~~~l~nlvmqL 729 (1377)
++||+|||+|.+ |..+||+|.+.+++|+|+..|+.+|..+.... .....+........ .. ...++++.+++|
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 999999999999 89999999999999999999999999988722 00111111000000 00 356889999999
Q ss_pred HHhhCCcchhcccc-CCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHH
Q 000642 730 RKVCNHPELFERNE-GSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISREL 808 (1377)
Q Consensus 730 RKvCnHP~Lfer~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~ 808 (1377)
|++||||.+|.... .... .
T Consensus 649 r~~~~~p~l~~~~~~~~~~----------------------------------------------~-------------- 668 (866)
T COG0553 649 RQICNHPALVDEGLEATFD----------------------------------------------R-------------- 668 (866)
T ss_pred HHhccCccccccccccccc----------------------------------------------h--------------
Confidence 99999999875320 0000 0
Q ss_pred HhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhh
Q 000642 809 FQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFME 888 (1377)
Q Consensus 809 l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~ 888 (1377)
. . .....
T Consensus 669 ------------~---~----------------------------------------------------------~~~~~ 675 (866)
T COG0553 669 ------------I---V----------------------------------------------------------LLLRE 675 (866)
T ss_pred ------------h---h----------------------------------------------------------hhhhc
Confidence 0 0 00000
Q ss_pred hhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCC
Q 000642 889 AMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPI 968 (1377)
Q Consensus 889 ~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 968 (1377)
+.
T Consensus 676 ----~~-------------------------------------------------------------------------- 677 (866)
T COG0553 676 ----DK-------------------------------------------------------------------------- 677 (866)
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCc
Q 000642 969 NVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1377)
Q Consensus 969 ~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~ 1048 (1377)
+. ....
T Consensus 678 ---~~-----------------------------------------------------------------------~~~~ 683 (866)
T COG0553 678 ---DF-----------------------------------------------------------------------DYLK 683 (866)
T ss_pred ---cc-----------------------------------------------------------------------cccc
Confidence 00 0000
Q ss_pred ccccccc-chHHHHHHHH-HHHhhCCC--eEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCc
Q 000642 1049 AKLLTDS-GKLQTLDILL-KRLRAENH--RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDI 1124 (1377)
Q Consensus 1049 ~~li~~S-gKL~~L~~LL-~~Lk~~gh--KVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di 1124 (1377)
..++..| +|+..|.++| ..++.+|| |||||+||+.|+|+|+.+|...++.|+++||+++..+|+.+|++|++++++
T Consensus 684 ~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~ 763 (866)
T COG0553 684 KPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEE 763 (866)
T ss_pred chhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCC
Confidence 1124557 9999999999 89999999 999999999999999999999999999999999999999999999999899
Q ss_pred eEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Q 000642 1125 FVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVM 1204 (1377)
Q Consensus 1125 ~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi 1204 (1377)
+|||+|++|||+|||||+|++||+||+||||+++.|||||||||||+++|.||||+++|||||+|+.++..|..+...++
T Consensus 764 ~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~ 843 (866)
T COG0553 764 KVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLI 843 (866)
T ss_pred ceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CcccCCCCCHHhHHHhhc
Q 000642 1205 TG-GHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1205 ~g-~~~~~~~l~~~di~~ll~ 1224 (1377)
++ +.-....++.+++..++.
T Consensus 844 ~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 844 DAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred hhhcccchhhccHHHHHHHhc
Confidence 96 554445667777766653
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.4e-66 Score=600.28 Aligned_cols=564 Identities=27% Similarity=0.436 Sum_probs=407.6
Q ss_pred CCcccCCchhccCcchhHHHHHHHHHHH-------H--hcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 424 TSTVQTPELFKGSLKEYQLKGLQWLVNC-------Y--EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 424 ~~~v~qP~~l~~~Lr~YQlkGL~WL~~l-------y--~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
..++..-+.|...|+|||+-|++||+.. | ..|.|||||+.||||||+|+|+|+--+.. +.-.+.+|+|+|
T Consensus 242 ee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivP 320 (1387)
T KOG1016|consen 242 EEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVP 320 (1387)
T ss_pred CcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEe
Confidence 3456666778889999999999999632 2 26899999999999999999999987774 444589999999
Q ss_pred cccHHHHHHHHHHHCCC-----------CeeEeecCCh---hhhHHHhhccCcccccccCCCeeEEEEechhhhhh----
Q 000642 495 ASVLNNWADEISRFCPD-----------LKTLPYWGGL---QERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---- 556 (1377)
Q Consensus 495 ~Sll~nW~~Ei~kf~p~-----------l~vl~y~Gs~---~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d---- 556 (1377)
-.++.||..||..|.|. |+|++..... ..|..+-..|. ..-.|+++.|++++--
T Consensus 321 iNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv--------~~GGVlLvGYemfRLL~lk~ 392 (1387)
T KOG1016|consen 321 INTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV--------QTGGVLLVGYEMFRLLILKT 392 (1387)
T ss_pred hHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh--------ccCCEEEehHHHHHHHHHhc
Confidence 99999999999999986 5666655432 23444444443 4456999999997431
Q ss_pred ----------------------------------hhhhhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCC
Q 000642 557 ----------------------------------EKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTP 602 (1377)
Q Consensus 557 ----------------------------------~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTP 602 (1377)
.+.|.+-..|+|||||+|+|||.....+.+|..+++++|++|||-|
T Consensus 393 ~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYP 472 (1387)
T KOG1016|consen 393 LPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYP 472 (1387)
T ss_pred ccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccc
Confidence 1123334689999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHH-----HHHHHHHHHhHHhHhhhhhcCCCc
Q 000642 603 IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNR-----LHAILKPFMLRRVKKDVISELTTK 677 (1377)
Q Consensus 603 IQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~r-----Lh~iLkpfmLRR~KkdV~~eLP~K 677 (1377)
+|||+-|+|+++.|+.|..++...+|...|.+||.++...+++.+.-.+.| ||.+|+.|+-||+..-+..-||.|
T Consensus 473 LQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k 552 (1387)
T KOG1016|consen 473 LQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEK 552 (1387)
T ss_pred cccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccc
Confidence 999999999999999999999999999999999999999988877766544 999999999999999999999999
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHH---HHHhhCCcchhccccCCcccccccCC
Q 000642 678 TEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQ---LRKVCNHPELFERNEGSSYLYFGEIP 754 (1377)
Q Consensus 678 ~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmq---LRKvCnHP~Lfer~~~~s~~~~~~~~ 754 (1377)
.|+++.+.+|..||.||+.+.-... .+...++ ...+|-++. ..|+.|||+.+-+..
T Consensus 553 ~EyViLvr~s~iQR~LY~~Fm~d~~-r~~~~~~---------~~~~NPLkAF~vCcKIWNHPDVLY~~l----------- 611 (1387)
T KOG1016|consen 553 KEYVILVRKSQIQRQLYRNFMLDAK-REIAANN---------DAVFNPLKAFSVCCKIWNHPDVLYRLL----------- 611 (1387)
T ss_pred cceEEEEeHHHHHHHHHHHHHHHHH-Hhhcccc---------ccccChHHHHHHHHHhcCChHHHHHHH-----------
Confidence 9999999999999999999863211 1111111 112344444 456669998753210
Q ss_pred CCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhhccCCCCC
Q 000642 755 NSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDA 834 (1377)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~ 834 (1377)
..+.....
T Consensus 612 -------------------------------~k~~~a~e----------------------------------------- 619 (1387)
T KOG1016|consen 612 -------------------------------EKKKRAEE----------------------------------------- 619 (1387)
T ss_pred -------------------------------HHhhhhhh-----------------------------------------
Confidence 00000000
Q ss_pred CCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccC
Q 000642 835 SPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIP 914 (1377)
Q Consensus 835 ~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~ 914 (1377)
.++.-.| .... + ...
T Consensus 620 -------------~dl~vee------------~~~a---------------------g-~~~------------------ 634 (1387)
T KOG1016|consen 620 -------------DDLRVEE------------MKFA---------------------G-LQQ------------------ 634 (1387)
T ss_pred -------------hhhhHHH------------Hhhh---------------------c-ccc------------------
Confidence 0000000 0000 0 000
Q ss_pred cchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccchhHHHHh
Q 000642 915 SRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLL 994 (1377)
Q Consensus 915 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l 994 (1377)
.+..+.+ .+.++...+..+.... .+.....+....+|+
T Consensus 635 -------~~~P~~~-~~~~~s~~laSs~~k~-------~n~t~kp~~s~~~p~--------------------------- 672 (1387)
T KOG1016|consen 635 -------QQSPFNS-IPSNPSTPLASSTSKS-------ANKTKKPRGSKKAPK--------------------------- 672 (1387)
T ss_pred -------cCCCCCC-CCCCCCCcccchhhhh-------hcccCCcccCcCCCC---------------------------
Confidence 0000000 0000000000000000 000000000000000
Q ss_pred hhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHHHHhhCCCe
Q 000642 995 IGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHR 1074 (1377)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghK 1074 (1377)
..+-+.+ ......+....|..+. ..++..+.|+..+.+++.+-..-|.|
T Consensus 673 ---------------------f~ee~~e---~~~y~~w~~el~~nYq-------~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 673 ---------------------FDEEDEE---VEKYSDWTFELFENYQ-------EGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred ---------------------ccccccc---ccchhhHHHHHHhhhh-------cccccCCCceEEEEeeeccccccCce
Confidence 0000000 0000011111111110 12345577888888888887778999
Q ss_pred EEEEeccchHHHHHHHHHHhCC------------------CcEEEecCCCCHHHHHHHHHHhccCCCce-EEEEeccccc
Q 000642 1075 VLLFAQMTKMLNILEDYMNYRK------------------YRYLRLDGSSTIMDRRDMVRDFQHRSDIF-VFLLSTRAGG 1135 (1377)
Q Consensus 1075 VLIFSQ~t~mLDiLee~L~~~g------------------~~y~rLDGstk~edR~~~V~~Fq~~~di~-VfLLSTrAGG 1135 (1377)
+|||||-...||+|+++|..+. ..|+|+||++...+|..++++|+..+.+. .||||||||.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 9999999999999999998653 46999999999999999999999988876 9999999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILA 1215 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g~~~~~~~l~ 1215 (1377)
+||||.+|++||+||-.|||..+.||++|++|+||+|+|+|||||+.+|.|.+|++|+..|..+++.|+++-+... .++
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~a-n~s 880 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDA-NIS 880 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887653 578
Q ss_pred HHhHHHhhcCcHH
Q 000642 1216 PEDVVSLLLDDAQ 1228 (1377)
Q Consensus 1216 ~~di~~ll~d~~~ 1228 (1377)
..|+..|+++++.
T Consensus 881 ~Ke~enLl~~~ea 893 (1387)
T KOG1016|consen 881 QKELENLLMYDEA 893 (1387)
T ss_pred HHHHHHHhhhhhc
Confidence 8899999987754
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=6e-58 Score=519.57 Aligned_cols=425 Identities=30% Similarity=0.432 Sum_probs=333.6
Q ss_pred CchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHC
Q 000642 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1377)
Q Consensus 430 P~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~ 509 (1377)
|+-|...|.|||++||++.++ .|..++||||||||||||||++..|+... +|.|||||+|+...|.+++.+|.
T Consensus 192 d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~l 264 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFL 264 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhc
Confidence 444555799999999999876 67789999999999999999998887654 69999999999999999999999
Q ss_pred CCCee-EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHH
Q 000642 510 PDLKT-LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLL 588 (1377)
Q Consensus 510 p~l~v-l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~ 588 (1377)
|...- .+..++... ...+ .....|.|+||++++.....+..-+|.+||+||+|++|+..++|.+++.
T Consensus 265 ps~~pi~vv~~~~D~---------~~~~---~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~ 332 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDP---------LPDV---CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAAT 332 (689)
T ss_pred ccccceEEEecccCC---------cccc---ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhh
Confidence 97543 232232110 0000 1123699999999999999999999999999999999999999999998
Q ss_pred hc--cCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccc--ccCCCcchHHHHHHHHHHH-HHHh
Q 000642 589 SF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHA--EHGGTLNEHQLNRLHAILK-PFML 663 (1377)
Q Consensus 589 ~l--~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~--~~~~~lne~ql~rLh~iLk-pfmL 663 (1377)
-+ .+.|.+||||||--....|||.++..+++.+|....+|--.|+..-.-.. +..+. ..+..|+.+|. ..|+
T Consensus 333 dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~---tnl~EL~~lL~k~lMI 409 (689)
T KOG1000|consen 333 DLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGC---TNLEELAALLFKRLMI 409 (689)
T ss_pred hHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCC---CCHHHHHHHHHHHHHH
Confidence 77 78999999999999999999999999999999999999998875432211 11111 23667888874 5799
Q ss_pred HHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhcccc
Q 000642 664 RRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNE 743 (1377)
Q Consensus 664 RR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~ 743 (1377)
||+|.||..+||+|..++| +..+.++-+.-+++..... + + .. .+ .|+- +|-.|.
T Consensus 410 RRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a~--~------~-t~-------~~-~~e~----~~~~l~---- 463 (689)
T KOG1000|consen 410 RRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAAA--D------Y-TK-------VN-SMER----KHESLL---- 463 (689)
T ss_pred HHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHhh--h------c-ch-------hh-hhhh----hhHHHH----
Confidence 9999999999999955444 4445544444433322110 0 0 00 00 0000 000000
Q ss_pred CCcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhh
Q 000642 744 GSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQ 823 (1377)
Q Consensus 744 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~ 823 (1377)
T Consensus 464 -------------------------------------------------------------------------------- 463 (689)
T KOG1000|consen 464 -------------------------------------------------------------------------------- 463 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcc
Q 000642 824 SIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGK 903 (1377)
Q Consensus 824 s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 903 (1377)
T Consensus 464 -------------------------------------------------------------------------------- 463 (689)
T KOG1000|consen 464 -------------------------------------------------------------------------------- 463 (689)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCccccccccc
Q 000642 904 VRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTE 983 (1377)
Q Consensus 904 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~ 983 (1377)
.
T Consensus 464 ------------------------------------l------------------------------------------- 464 (689)
T KOG1000|consen 464 ------------------------------------L------------------------------------------- 464 (689)
T ss_pred ------------------------------------H-------------------------------------------
Confidence 0
Q ss_pred cccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHH
Q 000642 984 EQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDI 1063 (1377)
Q Consensus 984 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~ 1063 (1377)
.|+ .+.-.|+....+
T Consensus 465 -------------------------------------------------~y~----------------~tgiaK~~av~e 479 (689)
T KOG1000|consen 465 -------------------------------------------------FYS----------------LTGIAKAAAVCE 479 (689)
T ss_pred -------------------------------------------------HHH----------------HhcccccHHHHH
Confidence 000 011123333333
Q ss_pred HHHH----HhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccC
Q 000642 1064 LLKR----LRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGIN 1139 (1377)
Q Consensus 1064 LL~~----Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGIN 1139 (1377)
.|.. .-+.+.|+|||+.++.|||-|+.++..+++.++||||++...+|+.++..||.+.++.|-+||.-|||.||.
T Consensus 480 yi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 480 YILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 3333 335578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcC
Q 000642 1140 LTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1206 (1377)
Q Consensus 1140 LTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g 1206 (1377)
||+|+.|+|.+.+|||.+..||-|||||+|||..|.||.||++||+||.++..+.+|..+...+--|
T Consensus 560 ~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~ 626 (689)
T KOG1000|consen 560 LTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLS 626 (689)
T ss_pred eeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999988666444
No 17
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.8e-59 Score=578.75 Aligned_cols=523 Identities=28% Similarity=0.410 Sum_probs=379.4
Q ss_pred hhHHHHHHHHHHHHhc-CCCEEEEeCCCCcHHHHHHHHHHHHHHhcc------cCCcEEEEeCcccHHHHHHHHHHHCC-
Q 000642 439 EYQLKGLQWLVNCYEQ-GLNGILADEMGLGKTIQAMAFLAHLAEEKN------IWGPFLVVAPASVLNNWADEISRFCP- 510 (1377)
Q Consensus 439 ~YQlkGL~WL~~ly~~-g~nGILADEMGLGKTIQsIAlLa~L~e~~~------i~gp~LIV~P~Sll~nW~~Ei~kf~p- 510 (1377)
.+|..+..|+.....+ -.|||+||+||+|||+++|+++........ -.+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 6676666666655433 348999999999999999999876544333 34679999999999999999966553
Q ss_pred -CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHh
Q 000642 511 -DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 511 -~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~ 589 (1377)
.+.+++|+| | .++.. ..++++||||||.++.. ..+..+.|-+||+||||.|+|.+++.++++..
T Consensus 215 ~~l~v~v~~g----r-----~kd~~----el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~ 279 (674)
T KOG1001|consen 215 DKLSIYVYHG----R-----TKDKS----ELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQ 279 (674)
T ss_pred cceEEEEecc----c-----ccccc----hhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhhee
Confidence 478889998 1 12222 34788899999999986 55677999999999999999999999999999
Q ss_pred ccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHhHhh
Q 000642 590 FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669 (1377)
Q Consensus 590 l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~Kkd 669 (1377)
+++.+||+|||||+||+++|||+++.|+.-.+|.....|...+..|+++... .+-+.+++.+|+++|+||+|..
T Consensus 280 L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~------~~~~k~l~~~L~~v~lrrtK~~ 353 (674)
T KOG1001|consen 280 LDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY------KEGVKTLQGILKKVMLRRTKEM 353 (674)
T ss_pred eccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH------HHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999998876652 3558999999999999999963
Q ss_pred -----hhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccC
Q 000642 670 -----VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEG 744 (1377)
Q Consensus 670 -----V~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~ 744 (1377)
...+||+++..++.|+++..++.+|..+........-. .........++..++-.+.+||++|+||.|+.....
T Consensus 354 ~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~-~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~ 432 (674)
T KOG1001|consen 354 EVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN-YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMD 432 (674)
T ss_pred cccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH-HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhh
Confidence 24479999999999999999999999987653211100 011122345678899999999999999998642210
Q ss_pred CcccccccCCCCCCCCCCCCcccccccCCCCccccccchhhHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhh
Q 000642 745 SSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQS 824 (1377)
Q Consensus 745 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s 824 (1377)
.. ..+|..+..
T Consensus 433 ~~----------------------~~~~~~~~~----------------------------------------------- 443 (674)
T KOG1001|consen 433 SL----------------------GDSGSAAAL----------------------------------------------- 443 (674)
T ss_pred cc----------------------ccccccchH-----------------------------------------------
Confidence 00 000000000
Q ss_pred hhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcch
Q 000642 825 IFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKV 904 (1377)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~ 904 (1377)
..++. ..+... ..+
T Consensus 444 ---------------------------------------~~~~i---------------~~l~~~----~~c-------- 457 (674)
T KOG1001|consen 444 ---------------------------------------IIRLI---------------VDLSVS----HWC-------- 457 (674)
T ss_pred ---------------------------------------HHHHH---------------HHHhhc----ccc--------
Confidence 00000 000000 000
Q ss_pred hhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHHHHHHHHHhhcccccccCCCCCCCCccccCCcccccccccc
Q 000642 905 RAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEE 984 (1377)
Q Consensus 905 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~ 984 (1377)
..+.+ +...+.+.++
T Consensus 458 ---------~ic~~---~~~~~it~c~----------------------------------------------------- 472 (674)
T KOG1001|consen 458 ---------HICCD---LDSFFITRCG----------------------------------------------------- 472 (674)
T ss_pred ---------ccccc---cccceeeccc-----------------------------------------------------
Confidence 00000 0000011111
Q ss_pred ccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCCCcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHH
Q 000642 985 QHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDIL 1064 (1377)
Q Consensus 985 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~L 1064 (1377)
|..|..++...-..++.. .+|.+...+.. ...++..+....+.. ....|.|+..++..
T Consensus 473 --h~~c~~c~~~~i~~~~~~--~~~~cr~~l~~----------------~~l~s~~~~~~~~~~--~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 473 --HDFCVECLKKSIQQSENA--PCPLCRNVLKE----------------KKLLSANPLPSIIND--LLPESSKIYAFLKI 530 (674)
T ss_pred --chHHHHHHHhccccccCC--CCcHHHHHHHH----------------HHHhhcccccchhhh--ccchhhhhHHHHHH
Confidence 111111111111000000 00000000000 000000000000000 11157899999999
Q ss_pred HHHHhhCCC-eEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcC
Q 000642 1065 LKRLRAENH-RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAA 1143 (1377)
Q Consensus 1065 L~~Lk~~gh-KVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaA 1143 (1377)
|........ ++||||||+.++++++-.|...++.|.++||.+....|.+.+.+|..++++.|+|+|++|||+|||||+|
T Consensus 531 l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a 610 (674)
T KOG1001|consen 531 LQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAA 610 (674)
T ss_pred HhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhh
Confidence 986554444 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHc
Q 000642 1144 DTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMT 1205 (1377)
Q Consensus 1144 dtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~ 1205 (1377)
++||..||+|||+++.||||||||+||+|+|+|+||++++||||||++.+..|..+.....+
T Consensus 611 ~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 611 SHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred hHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998876654
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.7e-56 Score=572.30 Aligned_cols=432 Identities=21% Similarity=0.269 Sum_probs=322.5
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCe
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~ 513 (1377)
...|.|||+..+.++... ...+.|||||||||||||+++++.++.... ..+|+|||||++|++||+.|+.+++ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 457999999999876654 356789999999999999999999887654 4479999999999999999997655 344
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhh---hhhhccceeEEEEcccccccC---chhHHHHHH
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE---KYFRRVKWQYMVLDEAQAIKS---SNSIRWKTL 587 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~---~~l~~~~w~~VIlDEAH~iKN---~~S~r~kal 587 (1377)
+.+|.+...... . . ... +....++++|+||+.+.++. ..+....|++|||||||++++ ..|.+++.+
T Consensus 226 ~~i~~~~~~~~~--~-~-~~~---~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 226 FSLFDEERYAEA--Q-H-DAD---NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred eEEEcCcchhhh--c-c-ccc---CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 555544321110 0 0 000 11235689999999999865 346677999999999999995 357788988
Q ss_pred Hhc--cCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhh--hccccc---ccCCCcchHHHHHHHHHH--
Q 000642 588 LSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK--GIESHA---EHGGTLNEHQLNRLHAIL-- 658 (1377)
Q Consensus 588 ~~l--~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk--~ie~~~---~~~~~lne~ql~rLh~iL-- 658 (1377)
..+ +++++|+|||||+||+..|+|++|+||+|..|++.+.|.+.... ++.... ..+..++......|..+|
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 877 68899999999999999999999999999999999999875542 221000 011111222222222221
Q ss_pred ----------------------------------HHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhh
Q 000642 659 ----------------------------------KPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLA 704 (1377)
Q Consensus 659 ----------------------------------kpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~ 704 (1377)
.++|+|+++.+|. .+|.+..+.+.++++.. |+......
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~----y~~~~~~~--- 450 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ----YQTAIKVS--- 450 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH----HHHHHHHh---
Confidence 2577888888875 57888888888887653 32211100
Q ss_pred hhcccccCCcchHhHHHHHHHHHHHHHhhCCcchhccccCCcccccccCCCCCCCCCCCCcccccccCCCCccccccchh
Q 000642 705 GLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKI 784 (1377)
Q Consensus 705 ~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~lp~l 784 (1377)
....+++ |.+|+-+.
T Consensus 451 --------------------~~~~~~~-~l~pe~~~-------------------------------------------- 465 (956)
T PRK04914 451 --------------------LEARARD-MLYPEQIY-------------------------------------------- 465 (956)
T ss_pred --------------------HHHHHHh-hcCHHHHH--------------------------------------------
Confidence 0000111 11111000
Q ss_pred hHHHhhhhhhhhhhcccCCchhHHHhhhhccccchhhhhhhhhccCCCCCCCCCccccccccccCCChHHHHHhhhhhhH
Q 000642 785 VHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFM 864 (1377)
Q Consensus 785 ~~~e~~~~~~~~~~~~~~g~~~~~l~~~~ni~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~~~~~~~~~ 864 (1377)
+.
T Consensus 466 --------------------------------------~~---------------------------------------- 467 (956)
T PRK04914 466 --------------------------------------QE---------------------------------------- 467 (956)
T ss_pred --------------------------------------HH----------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHhhhhcccccCCCCCCcchhhhhhhhccCcchhhhhhhhhccCCCCCCCcchhhhhhHH
Q 000642 865 ERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQE 944 (1377)
Q Consensus 865 e~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 944 (1377)
+. .
T Consensus 468 ---------------------~~-----~--------------------------------------------------- 470 (956)
T PRK04914 468 ---------------------FE-----D--------------------------------------------------- 470 (956)
T ss_pred ---------------------Hh-----h---------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHhhcccccccCCCCCCCCccccCCccccccccccccchhHHHHhhhccccccCCCCCCCCCCcchhhhhhccCC
Q 000642 945 RLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELP 1024 (1377)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~a~~i~~~C~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~ 1024 (1377)
.
T Consensus 471 ---~---------------------------------------------------------------------------- 471 (956)
T PRK04914 471 ---N---------------------------------------------------------------------------- 471 (956)
T ss_pred ---h----------------------------------------------------------------------------
Confidence 0
Q ss_pred CcchhhhhhhhhcCCCCCCCCCCccccccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHH-HhCCCcEEEec
Q 000642 1025 VAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYM-NYRKYRYLRLD 1103 (1377)
Q Consensus 1025 ~~~~~~~~~~~~~~s~~~~~~~d~~~li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L-~~~g~~y~rLD 1103 (1377)
..-...++|+..|..+|+.+. ++||||||++..+++.|+++| ...|++++.|+
T Consensus 472 ------------------------~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ih 525 (956)
T PRK04914 472 ------------------------ATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFH 525 (956)
T ss_pred ------------------------hhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEE
Confidence 000122578999999988764 789999999999999999999 56799999999
Q ss_pred CCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1104 GSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1104 Gstk~edR~~~V~~Fq~~~-di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
|+++..+|..+++.|++++ ++.| |+||.+||.||||+.|++||+||+||||....||+||+||+||++.|.||.++.+
T Consensus 526 G~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 526 EGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 9999999999999999854 6766 7889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCccc
Q 000642 1183 ETVEEKILQRASQKNTVQQLVMTGGHVQ 1210 (1377)
Q Consensus 1183 gTIEErI~~ra~~K~~l~~~Vi~g~~~~ 1210 (1377)
||+|++|++...+|..+...++.++...
T Consensus 605 ~t~~e~i~~~~~~~l~ife~~~~~~~~v 632 (956)
T PRK04914 605 GTAQERLFRWYHEGLNAFEHTCPTGRAL 632 (956)
T ss_pred CCHHHHHHHHHhhhcCceeccCCCHHHH
Confidence 9999999999999999988888776643
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.4e-58 Score=561.56 Aligned_cols=295 Identities=40% Similarity=0.686 Sum_probs=263.5
Q ss_pred cCCchhc---cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 428 QTPELFK---GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 428 ~qP~~l~---~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
.||..+. ++|.+||++|++|+...+..|..+|||||||||||||+|+++.++.......+|+||++|.+++.||..|
T Consensus 284 ~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e 363 (696)
T KOG0383|consen 284 DQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWERE 363 (696)
T ss_pred cCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCc
Confidence 4566555 8999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHCCCCeeEeecCChhhhHHHhhcc-Cccc---------cc---ccCCCeeEEEEechhhhhhhhhhhccceeEEEEc
Q 000642 505 ISRFCPDLKTLPYWGGLQERMVLRKNI-NPKR---------LY---RRDAGFHILITSYQLLVADEKYFRRVKWQYMVLD 571 (1377)
Q Consensus 505 i~kf~p~l~vl~y~Gs~~~rk~lrk~~-~~k~---------l~---~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlD 571 (1377)
+..|.|++.+.+|.|..+.|.+++... ...+ .. .....|||.+++|+++..+...+..+.|..+|+|
T Consensus 364 ~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livd 443 (696)
T KOG0383|consen 364 FELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVD 443 (696)
T ss_pred hhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEee
Confidence 999999999999999999998887642 1111 11 2346799999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHH
Q 000642 572 EAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQL 651 (1377)
Q Consensus 572 EAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql 651 (1377)
|+|++||..|++.+.+..+...++++|||||.||++.||++|||||.|..|.+...|.+.|.... .++++
T Consensus 444 e~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~----------~~~~~ 513 (696)
T KOG0383|consen 444 EAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS----------CEEQI 513 (696)
T ss_pred chhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh----------HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886432 46789
Q ss_pred HHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHH
Q 000642 652 NRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRK 731 (1377)
Q Consensus 652 ~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRK 731 (1377)
..||.+|.|+||||.|.||...+|.|+|.++.+.||+.|+.+|..+..+- ...+. ......+++|++|+|||
T Consensus 514 ~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n-~~~l~-------~~~~~~s~~n~~mel~K 585 (696)
T KOG0383|consen 514 KKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRN-WQGLL-------AGVHQYSLLNIVMELRK 585 (696)
T ss_pred HhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCC-hHHHh-------hcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886541 11111 13345789999999999
Q ss_pred hhCCcchhc
Q 000642 732 VCNHPELFE 740 (1377)
Q Consensus 732 vCnHP~Lfe 740 (1377)
+||||+||.
T Consensus 586 ~~~hpy~~~ 594 (696)
T KOG0383|consen 586 QCNHPYLSP 594 (696)
T ss_pred hhcCcccCc
Confidence 999999875
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=9.5e-46 Score=427.06 Aligned_cols=281 Identities=35% Similarity=0.654 Sum_probs=231.6
Q ss_pred hHHHHHHHHHHHH---------hcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCC--cEEEEeCcccHHHHHHHHHHH
Q 000642 440 YQLKGLQWLVNCY---------EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG--PFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 440 YQlkGL~WL~~ly---------~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~g--p~LIV~P~Sll~nW~~Ei~kf 508 (1377)
||+.||.||+..+ ....|||||||||+|||+++|+++.++.......+ ++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77889999999999999999999999887655543 699999999999999999999
Q ss_pred C-C-CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhh-----hhhhhhhccceeEEEEcccccccCchh
Q 000642 509 C-P-DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV-----ADEKYFRRVKWQYMVLDEAQAIKSSNS 581 (1377)
Q Consensus 509 ~-p-~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~-----~d~~~l~~~~w~~VIlDEAH~iKN~~S 581 (1377)
+ | ++++++|.|....+... ......++|+|+||+.+. .....+..++|++||+||||.+||..|
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---------~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s 151 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---------KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS 151 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---------SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS
T ss_pred ccccccccccccccccccccc---------ccccccceeeeccccccccccccccccccccccceeEEEecccccccccc
Confidence 9 4 68999999876222211 123467899999999999 677888889999999999999999999
Q ss_pred HHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHHHHHHHHH
Q 000642 582 IRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPF 661 (1377)
Q Consensus 582 ~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpf 661 (1377)
.+++++..+.++++|+|||||++|++.|||++|+||.|..+.+...|.++|..+- .........+|..++++|
T Consensus 152 ~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~-------~~~~~~~~~~L~~~l~~~ 224 (299)
T PF00176_consen 152 KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPD-------KENSYENIERLRELLSEF 224 (299)
T ss_dssp HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHH-------HTHHHHHHHHHHHHHCCC
T ss_pred cccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhc-------cccccccccccccccchh
Confidence 9999999999999999999999999999999999999999999999999997651 112345688999999999
Q ss_pred HhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHHHhhhhhcccccCCcchHhHHHHHHHHHHHHHhhCCcchh
Q 000642 662 MLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELF 739 (1377)
Q Consensus 662 mLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~g~~~~~~~~~l~nlvmqLRKvCnHP~Lf 739 (1377)
|+||+++++..+||++.++++.|+||+.|+.+|+.+....... +... ..........++..+++||++||||.|+
T Consensus 225 ~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 225 MIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEAREN--LKQS-SRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp EECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGC--CTT--T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHH--HHhh-cccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 9999999998899999999999999999999999987765322 1111 1234567889999999999999999873
No 21
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-42 Score=428.81 Aligned_cols=267 Identities=28% Similarity=0.401 Sum_probs=211.3
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcc----------------cCCcEEEEeCcccHHHHHHHHHHHCCCC-eeEe
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKN----------------IWGPFLVVAPASVLNNWADEISRFCPDL-KTLP 516 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~----------------i~gp~LIV~P~Sll~nW~~Ei~kf~p~l-~vl~ 516 (1377)
.|-.|++|||||+|||...+++..+-. .+. -.|.+|||||.+++.||-.||.++++.+ +|+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~-~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDL-PKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcc-cccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 455579999999999999998865542 111 1378999999999999999999999887 9999
Q ss_pred ecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhh----------------------hhhhccceeEEEEcccc
Q 000642 517 YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE----------------------KYFRRVKWQYMVLDEAQ 574 (1377)
Q Consensus 517 y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~----------------------~~l~~~~w~~VIlDEAH 574 (1377)
|.|-.+ .+|... .....||||+|||+.+..+. ..|..+.|++|||||||
T Consensus 452 Y~Girk------~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQ 522 (1394)
T KOG0298|consen 452 YFGIRK------TFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQ 522 (1394)
T ss_pred Eechhh------hcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHH
Confidence 999422 123222 23478999999999997752 23566789999999999
Q ss_pred cccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccccCCCcchHHHHHH
Q 000642 575 AIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRL 654 (1377)
Q Consensus 575 ~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~~~~~~lne~ql~rL 654 (1377)
.+.+.+|..+++++.+.+.|+|++||||||+ +.+|+.||.||.-.+|++...|.+...+++...+. ..++
T Consensus 523 MvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~---------~~~~ 592 (1394)
T KOG0298|consen 523 MVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAK---------CEPL 592 (1394)
T ss_pred hhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhh---------hhhH
Confidence 9999999999999999999999999999999 99999999999999999999999988877765422 3478
Q ss_pred HHHHHHHHhHHhHhhhhhc--CCCceEEEEEecCCHHHHHHHHHH----HHHHhhh------hhccccc--CCcchHhHH
Q 000642 655 HAILKPFMLRRVKKDVISE--LTTKTEVMVHCKLSSRQQAFYQAI----KNKISLA------GLFDNSR--GHLNEKKIL 720 (1377)
Q Consensus 655 h~iLkpfmLRR~KkdV~~e--LP~K~E~~v~c~LT~~Qr~lY~~l----~~~is~~------~ll~~~~--g~~~~~~~~ 720 (1377)
+.+++..|.|+.|-+|+.+ +||..+.+....+++.|-.+|... .+..... ..+..+. .........
T Consensus 593 ~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a 672 (1394)
T KOG0298|consen 593 LDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLA 672 (1394)
T ss_pred HHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHH
Confidence 9999999999999999887 688888888999999988877643 2221111 1111111 122234456
Q ss_pred HHHHHHHHHHHhhCCcchhc
Q 000642 721 NLMNIVIQLRKVCNHPELFE 740 (1377)
Q Consensus 721 ~l~nlvmqLRKvCnHP~Lfe 740 (1377)
.+.+.+.+||++|+||..+.
T Consensus 673 ~i~~~l~rLRq~Cchplv~~ 692 (1394)
T KOG0298|consen 673 IILKWLLRLRQACCHPLVGN 692 (1394)
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 78999999999999997654
No 22
>PF13892 DBINO: DNA-binding domain
Probab=100.00 E-value=1.9e-42 Score=342.62 Aligned_cols=137 Identities=50% Similarity=0.765 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 000642 192 EEMEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVD 271 (1377)
Q Consensus 192 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~re~~~~wk~~~ 271 (1377)
++++++++||.+||||||||+||+++++++++++||||+|.+|++|+|+|+++++|.+||+++|||||+|||++|||++|
T Consensus 2 ~~~~~~~kiW~~i~rkdi~K~~r~~~~~~~~~~~~~kk~a~~c~re~rr~~~rs~k~~Kd~~~Rakrl~rEm~~fwkk~e 81 (139)
T PF13892_consen 2 QYDAKRRKIWKDIARKDIPKVHRIKQQNHQNRQSNAKKIAQLCAREARRKQSRSQKNMKDTQLRAKRLMREMLSFWKKNE 81 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccCCCCCC
Q 000642 272 KEMAEVRKREEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSSQPS 328 (1377)
Q Consensus 272 ~~~~~~~~~~ek~~~~~~k~~~e~~e~~rq~rkl~fli~qtely~hf~~~k~~~~~~ 328 (1377)
|++++++++++||++++.|+++|.+|++||++||||||+|||||||||++++++++.
T Consensus 82 ke~~~~~k~~eKE~~e~~k~~~E~~e~~rq~~rl~fLl~QTElfsHF~~~k~~~~~~ 138 (139)
T PF13892_consen 82 KEERELRKKAEKEALEQKKKEEEKREAKRQQRRLNFLLTQTELFSHFMQNKAKTSEA 138 (139)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccC
Confidence 999999999999999999999999999999999999999999999999999987654
No 23
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-37 Score=382.34 Aligned_cols=132 Identities=18% Similarity=0.319 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+.++..|+......|+|+||||+++..++.+...| +. ..|+|.++..+|..++++|+.++.+.| |++|++|+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~v-Lv~SkVgd 553 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNT-IFLSKVGD 553 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccE-EEEecccc
Confidence 5788888888877678999999999998887777766 43 448999999999999999998778877 55569999
Q ss_pred cccCcCcCCEEEEeCCCC-ChhhhhHhhhchhccCCcCc-----EEEEEEEeCCCHHHHHHHHH
Q 000642 1136 LGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQTKD-----VTVYRLICKETVEEKILQRA 1193 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdW-NPt~d~QAmdRaHRiGQtk~-----VtVYRLItkgTIEErI~~ra 1193 (1377)
.||||+.|++||++++++ ++..+.|++||+.|.|..+. .++|.||+++|.|+..-.+-
T Consensus 554 eGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 554 TSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred cccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 999999999999999987 99999999999999997654 79999999999999886543
No 24
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.2e-33 Score=359.94 Aligned_cols=142 Identities=23% Similarity=0.334 Sum_probs=127.5
Q ss_pred ccchHHHHHHHHHHHh--hCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCC--------CCHHHHHHHHHHhccCCC
Q 000642 1054 DSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGS--------STIMDRRDMVRDFQHRSD 1123 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk--~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGs--------tk~edR~~~V~~Fq~~~d 1123 (1377)
.++|+..|.++|.+.. ..++|||||+++.++.+.|.++|...|+.+++++|+ ++..+|..++++|.+ ++
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~ 423 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GE 423 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CC
Confidence 3689999999999876 568999999999999999999999999999999997 788899999999998 46
Q ss_pred ceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000642 1124 IFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQ 1200 (1377)
Q Consensus 1124 i~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~ 1200 (1377)
+.| |++|.++++|+|++.+|+||+||++|||....|+.||++|.|+ +.||.|++++|+||.++.....|+...
T Consensus 424 ~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 424 FNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 666 8899999999999999999999999999999998888777765 789999999999999998777666554
No 25
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=8.2e-24 Score=245.93 Aligned_cols=150 Identities=21% Similarity=0.329 Sum_probs=134.1
Q ss_pred cccchHHHHHHHHHHHh--hCCCeEEEEeccchHHHHHHHHHHhCCCcEE-EecC--------CCCHHHHHHHHHHhccC
Q 000642 1053 TDSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYL-RLDG--------SSTIMDRRDMVRDFQHR 1121 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk--~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~-rLDG--------stk~edR~~~V~~Fq~~ 1121 (1377)
.+.+||..|.++|.+.. ..+.|||||+||.++.+.|.++|...+.+.. ++-| ++++.+..++++.|+.
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~- 423 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK- 423 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-
Confidence 34689999999999876 5578999999999999999999999988875 7766 4788999999999998
Q ss_pred CCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000642 1122 SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQ 1201 (1377)
Q Consensus 1122 ~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~ 1201 (1377)
+++.| |+||..|-+||++...|.||||||.-.|-.-.||+||.+| .+.-.||-|+++||-||--+..+.+|..-..
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 78888 9999999999999999999999999999999999999988 4788999999999999999999999987766
Q ss_pred HHHcCC
Q 000642 1202 LVMTGG 1207 (1377)
Q Consensus 1202 ~Vi~g~ 1207 (1377)
..+.+.
T Consensus 500 e~i~~~ 505 (542)
T COG1111 500 ESIRGL 505 (542)
T ss_pred HHHHHH
Confidence 655543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=1.2e-24 Score=269.27 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=111.6
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.+...+..++..+...|+++|||+..++..+.|.+.|...|+++..|+|+++.++|..+++.|.. +...|++.|++..|
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~ 406 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceec
Confidence 45555666666666778999999999999999999999999999999999999999999999986 56667666669999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcC-cEEEEEEEeCC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK-DVTVYRLICKE 1183 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk-~VtVYRLItkg 1183 (1377)
+|+++...|+||+++|.-+.....|++||++|.|..| .|+||-++-.-
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999999875 58999998643
No 27
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=5.4e-24 Score=258.88 Aligned_cols=137 Identities=20% Similarity=0.268 Sum_probs=122.2
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
..|+..+..++.... .+.+++||++.....+.|...|..-|+ +..++|.++..+|..+++.|.... +.+ |++++.+
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~-lv~~~vl 342 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKV-LVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCE-EEEeeec
Confidence 467788888888776 789999999999999999999998888 899999999999999999999855 555 9999999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhcc-CCcCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL-GQTKD--VTVYRLICKETVEEKILQRASQ 1195 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRi-GQtk~--VtVYRLItkgTIEErI~~ra~~ 1195 (1377)
++|+++..|+++|+..|.=++....|++||+.|. ..... +.+|-++..++.+..+..+...
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9999999999999999999999999999999994 44443 8899999999999888776665
No 28
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.7e-24 Score=245.74 Aligned_cols=127 Identities=20% Similarity=0.346 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+++..-|++.....|+|+||||. -+-.|.+|-...|-.| |.|.|+..+|..++..||.++.+..+.|| ++|.
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsD---nvfALk~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgD 600 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSD---NVFALKEYAIKLGKPF--IYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGD 600 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEec---cHHHHHHHHHHcCCce--EECCCchhHHHHHHHhcccCCccceEEEe-eccC
Confidence 4777777788888888999999995 4455667766667666 78999999999999999999999887776 7999
Q ss_pred cccCcCcCCEEEEeCCCC-ChhhhhHhhhchhccCCc----CcEEEEEEEeCCCHHHH
Q 000642 1136 LGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQT----KDVTVYRLICKETVEEK 1188 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdW-NPt~d~QAmdRaHRiGQt----k~VtVYRLItkgTIEEr 1188 (1377)
..|+|..|+.+|-..+.. .-..+.|+.||+-|--.. -.++.|-|++++|.|-.
T Consensus 601 tSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 601 TSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999999999999999987 456889999999996422 34899999999998854
No 29
>PTZ00110 helicase; Provisional
Probab=99.83 E-value=8.1e-19 Score=219.18 Aligned_cols=125 Identities=17% Similarity=0.327 Sum_probs=112.6
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
..|...|..+|..+...+.++|||++..+..+.|...|...|+..+.++|.++.++|..++++|.+ +.+.| |++|.++
T Consensus 360 ~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~I-LVaTdv~ 437 (545)
T PTZ00110 360 HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPI-MIATDVA 437 (545)
T ss_pred hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcE-EEEcchh
Confidence 346777778888877678999999999999999999999999999999999999999999999997 56666 8999999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
+.|||+..+++||+||.++++....|++||++|.|.+- ++|-|++.+
T Consensus 438 ~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~ 484 (545)
T PTZ00110 438 SRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPD 484 (545)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcc
Confidence 99999999999999999999999999999999999864 456677765
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.83 E-value=2.2e-18 Score=212.09 Aligned_cols=121 Identities=24% Similarity=0.386 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|+..|..+|... .+.++|||+......+.+.++|...++....++|.++..+|+.++++|.+ +.+.| |++|.+++.
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~v-LVaTdv~~r 304 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSV-LVATDVAAR 304 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEeccccc
Confidence 667777777543 35689999999999999999999999999999999999999999999996 66777 889999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
|||+.+.++||+||.+.++....|++||+.|.|+. -.+|.|++.+
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 99999999999999999999999999999999976 4566677764
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1.5e-18 Score=213.82 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=97.9
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeC
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1377)
.|.++|||+...+..+.+.++|...|+....++|+++.++|..++++|.. +.+.| |++|.+.|.|||+.+.++||+||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~v-LVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQV-VVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCCcccceEEEEeC
Confidence 46678999999999999999999999999999999999999999999995 67777 89999999999999999999999
Q ss_pred CCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1151 SDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1151 sdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
++.++....|++||++|.|+...+.+|
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999998766554
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.81 E-value=6e-18 Score=209.05 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=105.6
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|...|..++.. ..+.|+|||++-....+.|.++|...|+.+..++|.++.++|+.++++|.+ +++.| |++|.+++
T Consensus 321 ~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~v-LvaT~~l~ 396 (475)
T PRK01297 321 DKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRV-LVATDVAG 396 (475)
T ss_pred hHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcE-EEEccccc
Confidence 455555555543 235699999999999999999999999999999999999999999999987 67777 88999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
.|||+.+.|+||+||.++++....|++||++|.|+.- .++-|+..+
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 9999999999999999999999999999999999753 455566554
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.81 E-value=9.9e-18 Score=204.93 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+..|..++.. ..+.++|||+......+.|.+.|...|+....++|.++..+|..++++|.. +.+.| |++|.+++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~v-LVaTd~~~ 306 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNV-LVATDVAA 306 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcE-EEEccccc
Confidence 355555555543 245799999999999999999999999999999999999999999999986 77777 99999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEE
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtV 1176 (1377)
.|||+...++||+||+++++....|++||++|.|..-.+.+
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999999999999999999998655444
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.80 E-value=4.4e-17 Score=200.33 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=122.7
Q ss_pred cchHHHHHHHHHHHhhC--CCeEEEEeccchHHHHHHHHHH-hC--CCcEEEecC--------CCCHHHHHHHHHHhccC
Q 000642 1055 SGKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMN-YR--KYRYLRLDG--------SSTIMDRRDMVRDFQHR 1121 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~--ghKVLIFSQ~t~mLDiLee~L~-~~--g~~y~rLDG--------stk~edR~~~V~~Fq~~ 1121 (1377)
.+|++.|.+.|.+.... +-|+|||+.+....+.|-.+|. .. |++--.+-| +++..+....++.|++
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~- 472 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD- 472 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-
Confidence 67999999999887754 5799999999999999999987 22 445444444 5677888999999998
Q ss_pred CCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHH-HHHHHHHH
Q 000642 1122 SDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQR-ASQKNTVQ 1200 (1377)
Q Consensus 1122 ~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~r-a~~K~~l~ 1200 (1377)
+++.| |++|..|-+||+...+|-||.||-.=||....||||| +| .+.-.++-|.+ ..|+.-+++ ...|+.++
T Consensus 473 G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~lm 545 (746)
T KOG0354|consen 473 GEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEKLM 545 (746)
T ss_pred CCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHHHH
Confidence 88888 9999999999999999999999999999999999999 55 56656665566 455555544 34677777
Q ss_pred HHHHcCCcccCCCCCHHhHHHhhc
Q 000642 1201 QLVMTGGHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1201 ~~Vi~g~~~~~~~l~~~di~~ll~ 1224 (1377)
...+++-.. +.++++.....
T Consensus 546 ~~~i~~~q~----~~p~~~~~~i~ 565 (746)
T KOG0354|consen 546 NQTISKIQL----MLPAEFRPKIL 565 (746)
T ss_pred HHHHHHHHh----cCHHHHHHHhh
Confidence 777776442 44555555444
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=8.3e-18 Score=204.92 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+..|..++... .+.++|||+......+.|.++|...|+++..++|.++.++|..++++|++ +++.| |++|.+++
T Consensus 241 ~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~v-LVaTdv~~ 316 (423)
T PRK04837 241 EKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDI-LVATDVAA 316 (423)
T ss_pred HHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcE-EEEechhh
Confidence 4666666666542 36799999999999999999999999999999999999999999999987 67777 99999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
.|||+...++||+||+++++....|++||++|.|+. -+++-|++.
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~--G~ai~~~~~ 361 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS--GHSISLACE 361 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCC--eeEEEEeCH
Confidence 999999999999999999999999999999999966 445566665
No 36
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.80 E-value=1.7e-17 Score=203.82 Aligned_cols=115 Identities=25% Similarity=0.390 Sum_probs=101.2
Q ss_pred CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCC
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1377)
.+++|||+......+.|.+.|...++....++|.++.++|..++++|.+ +.+.| |++|.+.+.|||+.+.++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~i-LVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRV-LVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEccHHhcCCCcccCCEEEEeCC
Confidence 4699999999999999999999999999999999999999999999987 67777 889999999999999999999999
Q ss_pred CCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000642 1152 DWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQR 1192 (1377)
Q Consensus 1152 dWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~r 1192 (1377)
++++....|++||++|.|.+-. ++-|++.+ |..+++.
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~~--d~~~~~~ 359 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGE--ALSLVCVD--EHKLLRD 359 (456)
T ss_pred CCCHHHhhhhccccccCCCCee--EEEEecHH--HHHHHHH
Confidence 9999999999999999998654 44455543 4444443
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.8e-17 Score=207.95 Aligned_cols=121 Identities=21% Similarity=0.369 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+..|..+|.. ..+.++|||+......+.|.++|...++.+..|+|.++..+|..++++|.+ +++.| |++|.+.+
T Consensus 243 ~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~V-LVaTdv~a 318 (572)
T PRK04537 243 EKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEI-LVATDVAA 318 (572)
T ss_pred HHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEehhhh
Confidence 355556566543 357899999999999999999999999999999999999999999999987 67777 99999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
.|||+...++||+||.+|++....|++||+.|.|..- +.+.|++.
T Consensus 319 rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G--~ai~~~~~ 363 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEG--DAISFACE 363 (572)
T ss_pred cCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCc--eEEEEecH
Confidence 9999999999999999999999999999999999864 44455654
No 38
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.79 E-value=1.5e-17 Score=207.22 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~-~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
|...|..+|........++|||+......+.|.+.|.. .|+++..++|+++.++|..+++.|.. +++.| |++|.+++
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~I-LVaTdvl~ 429 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPV-IVATGVLG 429 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEEecHhh
Confidence 44455555655444456899999999999999999975 69999999999999999999999987 67777 89999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
.|||+..+++||+||++.++....|++||++|.|.. -++|.|++.+
T Consensus 430 rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 430 RGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred ccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 999999999999999999999999999999999965 4566677654
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.79 E-value=1.7e-17 Score=210.10 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccccc
Q 000642 1059 QTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGI 1138 (1377)
Q Consensus 1059 ~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGI 1138 (1377)
..|..+|... .+.++|||+...+..+.|.++|...|+++..++|+++.++|..++++|.. +++.| |++|.+.|.||
T Consensus 213 ~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~v-lVaT~a~~~GI 288 (591)
T TIGR01389 213 KFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKV-MVATNAFGMGI 288 (591)
T ss_pred HHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccC
Confidence 3344444432 26789999999999999999999999999999999999999999999987 45666 99999999999
Q ss_pred CcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEE
Q 000642 1139 NLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1139 NLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtV 1176 (1377)
|+...+.||+||+++|+....|++|||+|.|+...+.+
T Consensus 289 D~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 289 DKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred cCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 99999999999999999999999999999997765543
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.78 E-value=2.6e-17 Score=199.01 Aligned_cols=109 Identities=18% Similarity=0.342 Sum_probs=99.6
Q ss_pred CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCC
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1377)
..++|||+......+.+.++|...++....++|.++.++|..++++|.+ +.+.| |++|.+.+.|||+...++||+||+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~v-LvaT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRV-LITTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCE-EEEcccccCCcCcccCCEEEEECC
Confidence 4589999999999999999999999999999999999999999999997 67777 899999999999999999999999
Q ss_pred CCChhhhhHhhhchhccCCcCcEEEEEEEeCCC
Q 000642 1152 DWNPTLDLQAMDRAHRLGQTKDVTVYRLICKET 1184 (1377)
Q Consensus 1152 dWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgT 1184 (1377)
+.++....|++||++|.|.. -+++.|++..-
T Consensus 345 p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 99999999999999999954 55677776653
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.78 E-value=2.9e-17 Score=207.92 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeC
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1377)
.|.++|||+...+..+.+.+.|...|+.+..++|+++.++|..++++|.. +++.| |++|.+.|.|||+...+.||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~V-LVaT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQI-VVATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCE-EEEechhhccCCCCCcCEEEEeC
Confidence 46799999999999999999999999999999999999999999999987 56776 89999999999999999999999
Q ss_pred CCCChhhhhHhhhchhccCCcCcEE
Q 000642 1151 SDWNPTLDLQAMDRAHRLGQTKDVT 1175 (1377)
Q Consensus 1151 sdWNPt~d~QAmdRaHRiGQtk~Vt 1175 (1377)
.+.++....|++||++|.|....+.
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceEE
Confidence 9999999999999999999765433
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.77 E-value=7.1e-17 Score=203.84 Aligned_cols=113 Identities=14% Similarity=0.254 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|+..|..+|... ...++|||+.-....+.|.++|..+||....|+|.++..+|..++++|.. +.+.| |++|.+.+.
T Consensus 232 k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~I-LVATdv~ar 307 (629)
T PRK11634 232 KNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDI-LIATDVAAR 307 (629)
T ss_pred HHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcchHhc
Confidence 556666666532 34689999999999999999999999999999999999999999999987 66766 999999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCc
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~ 1173 (1377)
|||+...++||+||++.++....|++||+.|.|.+-.
T Consensus 308 GIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 9999999999999999999999999999999997643
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.76 E-value=2e-16 Score=201.26 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=108.4
Q ss_pred cCcchhHHHHHHHHHHHHhc--CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-ccHHHHHHHHHHHCC-
Q 000642 435 GSLKEYQLKGLQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCP- 510 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~--g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~Ei~kf~p- 510 (1377)
.+|.++|.+++..+..-... ..+.+|.-++|.|||+.++..+...... ...+||++|. .|..||.+++.++++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 36899999999988864432 3478999999999999876544444332 2478999995 556799999999987
Q ss_pred -CCeeEeecCChhhh--HHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHH
Q 000642 511 -DLKTLPYWGGLQER--MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1377)
Q Consensus 511 -~l~vl~y~Gs~~~r--k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal 587 (1377)
++++..++|+.... ....... .....+|+|.|+..+.... .| -+..+||+||+|++.- ..+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i-------~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH~fg~--~qr~~l~ 378 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETI-------ASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQHRFGV--EQRKKLR 378 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHH-------hCCCCCEEEecHHHHhccc-cc--cccceEEEechhhccH--HHHHHHH
Confidence 58888888875432 2111111 2346799999998875432 22 2568999999999843 2333333
Q ss_pred Hhcc---CCceEEeecCCCCC
Q 000642 588 LSFN---CRNRLLLTGTPIQN 605 (1377)
Q Consensus 588 ~~l~---~~~rLlLTGTPIQN 605 (1377)
.... ..+.+++||||+..
T Consensus 379 ~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcH
Confidence 3333 57899999999863
No 44
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.75 E-value=2.5e-16 Score=207.85 Aligned_cols=106 Identities=15% Similarity=0.298 Sum_probs=86.5
Q ss_pred CCeEEEEeccchHHHHHHHHHHhC------CC---cEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCc
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYR------KY---RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA 1142 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~------g~---~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTa 1142 (1377)
+.|+|||+.-....+.|.+.|... ++ .+..++|+++ ++..++++|.++ ....+|+|++..+.|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCccc
Confidence 469999999988888777776532 22 3567999885 788899999874 34356999999999999999
Q ss_pred CCEEEEeCCCCChhhhhHhhhchhccCC---cCcEEEEEEE
Q 000642 1143 ADTVIFYESDWNPTLDLQAMDRAHRLGQ---TKDVTVYRLI 1180 (1377)
Q Consensus 1143 AdtVIfyDsdWNPt~d~QAmdRaHRiGQ---tk~VtVYRLI 1180 (1377)
.++|||++|.=+++...|++||+-|+.- +....||-++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5556777654
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.73 E-value=4.5e-16 Score=199.24 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=107.0
Q ss_pred cCcchhHHHHHHHHHHHHhcC--CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-ccHHHHHHHHHHHCCC
Q 000642 435 GSLKEYQLKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD 511 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g--~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~Ei~kf~p~ 511 (1377)
.+|.++|.+++.-+..-...+ .+.+|.-++|.|||+.++..+...... + ..+||++|. .|..|+.+.+.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-g--~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-G--YQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 369999999998887644332 367999999999999887655443332 2 478999995 5567899999998865
Q ss_pred --CeeEeecCChhh--hHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHH
Q 000642 512 --LKTLPYWGGLQE--RMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1377)
Q Consensus 512 --l~vl~y~Gs~~~--rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal 587 (1377)
+++..++|+... +......+ .....+|+|+|...+.... .|. +..+||+||+|++.- ..+. .+
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l-------~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~Hrfg~--~qr~-~l 403 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAI-------ASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQHRFGV--EQRL-AL 403 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-------hCCCCCEEEchHHHhcccc-hhc--ccceEEEechhhhhH--HHHH-HH
Confidence 788888887542 22222211 1246799999998775422 232 568899999999832 2333 33
Q ss_pred Hhc-cCCceEEeecCCCC
Q 000642 588 LSF-NCRNRLLLTGTPIQ 604 (1377)
Q Consensus 588 ~~l-~~~~rLlLTGTPIQ 604 (1377)
... ...+.++|||||+.
T Consensus 404 ~~~~~~~~iL~~SATp~p 421 (681)
T PRK10917 404 REKGENPHVLVMTATPIP 421 (681)
T ss_pred HhcCCCCCEEEEeCCCCH
Confidence 332 45789999999974
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.72 E-value=3.4e-16 Score=200.37 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCC
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1377)
+...|||+...+..+.|.++|...|++...++|+++.++|..++++|.. +++.| |++|.|.|.|||+...+.||+||.
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~V-LVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINI-ICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcE-EEEechhhcCCCccCCcEEEEcCC
Confidence 4578999999999999999999999999999999999999999999987 56777 889999999999999999999999
Q ss_pred CCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1152 DWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1152 dWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
+-++....|++|||+|.|+.-.+..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999998665544
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.72 E-value=1.1e-15 Score=198.47 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=94.8
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
.|.+|+||++....++.+.+.|... ++++..+||.++.++|..++.+|.+ +++.| |+||.+.+.|||+..+++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~I-LVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQV-LVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEECChhhcccccccCCEEEE
Confidence 4779999999999999999999874 7899999999999999999999997 66776 999999999999999999999
Q ss_pred eCCCC-ChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1149 YESDW-NPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1149 yDsdW-NPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
+|.+. ..+...|++||++|-|+ +-++|-|+..+
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 99974 45567899999999886 45666666543
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.71 E-value=2.7e-15 Score=196.59 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=97.0
Q ss_pred HHHHHhhCCCeEEEEeccchHHHHHHHHHHh------CCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccc
Q 000642 1064 LLKRLRAENHRVLLFAQMTKMLNILEDYMNY------RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLG 1137 (1377)
Q Consensus 1064 LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~------~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlG 1137 (1377)
+|..+...+.++|||++-....+.+...|.. .+..+..++|+++.++|..+.+.|.+ +.+.| |++|.+.+.|
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~v-LVaTs~Le~G 353 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKV-VVSSTSLELG 353 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeE-EEECChHHhc
Confidence 3344444578999999999999998888875 24678899999999999999999987 66776 8899999999
Q ss_pred cCcCcCCEEEEeCCCCChhhhhHhhhchhcc-CCcCcEEEEEE
Q 000642 1138 INLTAADTVIFYESDWNPTLDLQAMDRAHRL-GQTKDVTVYRL 1179 (1377)
Q Consensus 1138 INLTaAdtVIfyDsdWNPt~d~QAmdRaHRi-GQtk~VtVYRL 1179 (1377)
||+.+.|+||+||++.++....|++||++|- |++..-.|+-+
T Consensus 354 IDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 354 IDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999975 56666666643
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.70 E-value=3.6e-15 Score=197.73 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=93.0
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
.|++|+||+.-...++.+.+.|... ++++..++|.++.++|..++.+|.+ +++.| |++|.+.+.||++..+++||+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~V-LVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCE-EEECchhhcccccccCCEEEE
Confidence 3679999999999999999999876 7899999999999999999999987 67777 899999999999999999999
Q ss_pred eCCC-CChhhhhHhhhchhccCCcCcEEEEEEE
Q 000642 1149 YESD-WNPTLDLQAMDRAHRLGQTKDVTVYRLI 1180 (1377)
Q Consensus 1149 yDsd-WNPt~d~QAmdRaHRiGQtk~VtVYRLI 1180 (1377)
++++ |......|+.||++|.|++- ++|-+.
T Consensus 886 ~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 886 ERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred ecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 8886 57778999999999998764 555343
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.69 E-value=1.2e-14 Score=187.22 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=101.4
Q ss_pred hCCCeEEEEeccchHHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcC
Q 000642 1070 AENHRVLLFAQMTKMLNILEDYMNYR--------KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLT 1141 (1377)
Q Consensus 1070 ~~ghKVLIFSQ~t~mLDiLee~L~~~--------g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLT 1141 (1377)
..+.++|||++-.++.+.|..+|... +.++..++|+...++|+.+.++|.+ +++.| |+||.+.++|||+.
T Consensus 269 ~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGIDI~ 346 (742)
T TIGR03817 269 AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLG-VATTNALELGVDIS 346 (742)
T ss_pred HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccCCcc
Confidence 35789999999999999999888653 5677889999999999999999997 77777 89999999999999
Q ss_pred cCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHH
Q 000642 1142 AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQ 1191 (1377)
Q Consensus 1142 aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ 1191 (1377)
..|+||+||.|=++....|++||++|.|+.-- ++-++..+..|..++.
T Consensus 347 ~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 347 GLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 99999999999999999999999999997643 4445555566766544
No 51
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.67 E-value=2.7e-16 Score=158.66 Aligned_cols=121 Identities=30% Similarity=0.472 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
++|+..+..++.++...+.++|||+.....+..+.++|...+..+..++|+++..+|..+++.|+... ..+|++|.++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChh
Confidence 37999999999988777899999999999999999999988999999999999999999999999844 4458899999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
|.|+|+..|++||+++++||+....|++||+||.||+..|+||
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999999888775
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.65 E-value=4.6e-14 Score=183.14 Aligned_cols=146 Identities=20% Similarity=0.168 Sum_probs=101.8
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHH-HHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCC-CC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM-AFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DL 512 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsI-AlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p-~l 512 (1377)
.|+|+|.+++.- .+..|.|.|++-.+|.|||+.+. +++.++.. .+.+|+|+| .+|+.|+..++.+|.+ ++
T Consensus 23 ~l~p~Q~~ai~~---~~~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 23 ELYPPQAEAVEA---GLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred cCCHHHHHHHHH---HHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 689999999863 24468899999999999999984 44555532 268999999 7788999999988754 67
Q ss_pred eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh----hhhccceeEEEEcccccccCch-hHHHHHH
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK----YFRRVKWQYMVLDEAQAIKSSN-SIRWKTL 587 (1377)
Q Consensus 513 ~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~----~l~~~~w~~VIlDEAH~iKN~~-S~r~kal 587 (1377)
++..++|....... .....||+|+|++.+..-.. .+ -..++||+||+|.+.+.. ...+..+
T Consensus 96 ~v~~~tGd~~~~~~------------~l~~~~IiV~Tpek~~~llr~~~~~l--~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 96 RVGISTGDYDSRDE------------WLGDNDIIVATSEKVDSLLRNGAPWL--DDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred EEEEEeCCcCcccc------------ccCCCCEEEECHHHHHHHHhcChhhh--hhcCEEEEECccccCCCcchHHHHHH
Confidence 88888886432210 12356899999987643211 12 245899999999997532 2222222
Q ss_pred ----Hhc-cCCceEEeecCC
Q 000642 588 ----LSF-NCRNRLLLTGTP 602 (1377)
Q Consensus 588 ----~~l-~~~~rLlLTGTP 602 (1377)
+.+ .....++||||+
T Consensus 162 l~rl~~~~~~~qii~lSATl 181 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATI 181 (737)
T ss_pred HHHHHhcCCCCcEEEEcccC
Confidence 112 345679999996
No 53
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=3.1e-14 Score=170.98 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHh-hCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1055 SGKLQTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk-~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
.+|..+|..+|.... ..+.|||||++..++.|-|+.+|...+|+..-|||..++.+|...++.|.+ ++..| |++|+.
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~v-LVATdV 400 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPV-LVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcce-EEEccc
Confidence 578999999999987 335699999999999999999999999999999999999999999999988 44444 999999
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCc
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~ 1173 (1377)
++.||++...|+||+||+|=|.....+|+||..|-|++-.
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 9999999999999999999999999999999999887743
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.64 E-value=2.4e-14 Score=170.73 Aligned_cols=135 Identities=16% Similarity=0.268 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHHHhccCCCceEEEEe
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKY--RYLRLDGSSTIMDRRD----MVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~--~y~rLDGstk~edR~~----~V~~Fq~~~di~VfLLS 1130 (1377)
|...+..++..+ ..+.++|||+...+..+.+..+|...+. .+..++|..+..+|.. ++++|.+ +...| |+|
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~i-lva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFV-IVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeE-EEE
Confidence 445555555444 3478999999999999999999988776 4899999999999976 4889987 55555 999
Q ss_pred ccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcC----cEEEEEEEeCC---CHHHHHHHHHHHHH
Q 000642 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK----DVTVYRLICKE---TVEEKILQRASQKN 1197 (1377)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk----~VtVYRLItkg---TIEErI~~ra~~K~ 1197 (1377)
|.+.+.|||+ .+|+||.++.+ +....|++||++|.|... .|+||.....+ ..+..++++-.++.
T Consensus 285 T~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 285 TQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred Ccchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999999999 58999998876 788899999999999763 46666655544 55566666655543
No 55
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=1.9e-15 Score=161.50 Aligned_cols=160 Identities=28% Similarity=0.409 Sum_probs=113.3
Q ss_pred CcchhHHHHHHHHHHHHhcC---CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-ccHHHHHHHHHHHCCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQG---LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPD 511 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g---~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~Ei~kf~p~ 511 (1377)
+||+||.+++.-+...++.. .+++|...+|.|||+.++.++..+.. ++|||||. +++.||.++|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999888877654 78999999999999999999988875 88999995 8889999999888766
Q ss_pred CeeEeecCCh---hhhH-HHhhccCcccccccCCCeeEEEEechhhhhhhhh-------------hhccceeEEEEcccc
Q 000642 512 LKTLPYWGGL---QERM-VLRKNINPKRLYRRDAGFHILITSYQLLVADEKY-------------FRRVKWQYMVLDEAQ 574 (1377)
Q Consensus 512 l~vl~y~Gs~---~~rk-~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~-------------l~~~~w~~VIlDEAH 574 (1377)
.......... ..+. ..................++++++|+.+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 4443211100 0000 0000000000111235678999999999876432 233578999999999
Q ss_pred cccCchhHHHHHHHhccCCceEEeecCCC
Q 000642 575 AIKSSNSIRWKTLLSFNCRNRLLLTGTPI 603 (1377)
Q Consensus 575 ~iKN~~S~r~kal~~l~~~~rLlLTGTPI 603 (1377)
++.+..+ |+.+..+...++|+|||||-
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9966554 77777788999999999995
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.61 E-value=9e-14 Score=179.02 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=99.1
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCC-CCe
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DLK 513 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p-~l~ 513 (1377)
.|+++|.+++.-+ ..|.|.|++-.+|.|||+++...|...... .+.+++|+| .++..++.+++.++.. +.+
T Consensus 22 ~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~~ 94 (674)
T PRK01172 22 ELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGMR 94 (674)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCCe
Confidence 5899999999865 358899999999999999886554443322 257899999 6778889999987653 566
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhh----hhhhhhccceeEEEEcccccccCch-hHHHHHHH
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----DEKYFRRVKWQYMVLDEAQAIKSSN-SIRWKTLL 588 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~----d~~~l~~~~w~~VIlDEAH~iKN~~-S~r~kal~ 588 (1377)
+..+.|....... .....||+|+|++.+.. +...+. ++++||+||+|.+.+.. ......+.
T Consensus 95 v~~~~G~~~~~~~------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEaH~l~d~~rg~~le~ll 160 (674)
T PRK01172 95 VKISIGDYDDPPD------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEIHIIGDEDRGPTLETVL 160 (674)
T ss_pred EEEEeCCCCCChh------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecchhccCCCccHHHHHHH
Confidence 7667675322110 01346899999986533 222232 56899999999996432 22333332
Q ss_pred ----hc-cCCceEEeecCC
Q 000642 589 ----SF-NCRNRLLLTGTP 602 (1377)
Q Consensus 589 ----~l-~~~~rLlLTGTP 602 (1377)
.+ ...+.++||||+
T Consensus 161 ~~~~~~~~~~riI~lSATl 179 (674)
T PRK01172 161 SSARYVNPDARILALSATV 179 (674)
T ss_pred HHHHhcCcCCcEEEEeCcc
Confidence 22 234579999996
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.60 E-value=2.4e-13 Score=175.98 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=101.8
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHH-HHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCC-CC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DL 512 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQs-IAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p-~l 512 (1377)
.|.|+|.+++.- .+..|.|.|++-.+|.|||+.+ ++++.++... .+.+|+|+| ..++.++..++.+|.. ++
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 589999999862 2345889999999999999999 5555555432 258999999 6678889999887643 57
Q ss_pred eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhh----hhhhccceeEEEEcccccccCc--hhHHHHH
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE----KYFRRVKWQYMVLDEAQAIKSS--NSIRWKT 586 (1377)
Q Consensus 513 ~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~----~~l~~~~w~~VIlDEAH~iKN~--~S~r~ka 586 (1377)
++..++|...... . .....+|+|+|++.+..-. ..+. +.++||+||+|.+.+. ....-..
T Consensus 97 ~v~~~~Gd~~~~~----~--------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE~H~l~~~~rg~~le~i 162 (720)
T PRK00254 97 RVAMTTGDYDSTD----E--------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADEIHLIGSYDRGATLEMI 162 (720)
T ss_pred EEEEEeCCCCCch----h--------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcCcCccCCccchHHHHHH
Confidence 7888888643211 0 1145789999988764321 1222 5689999999999643 2222223
Q ss_pred HHhc-cCCceEEeecCC
Q 000642 587 LLSF-NCRNRLLLTGTP 602 (1377)
Q Consensus 587 l~~l-~~~~rLlLTGTP 602 (1377)
+..+ .....++||||+
T Consensus 163 l~~l~~~~qiI~lSATl 179 (720)
T PRK00254 163 LTHMLGRAQILGLSATV 179 (720)
T ss_pred HHhcCcCCcEEEEEccC
Confidence 3333 345679999996
No 58
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.7e-13 Score=166.27 Aligned_cols=134 Identities=22% Similarity=0.390 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.|+..|..+|..... .++|||+.-....+.|...|..+|++...|+|+.++++|...+++|.+ +.+.| |+.|++++
T Consensus 259 ~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~v-LVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRV-LVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEEechhh
Confidence 488888888876543 279999999999999999999999999999999999999999999995 77777 99999999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQK 1196 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K 1196 (1377)
.||++...++||+||.+.+|....+++||..|.| +.-..+.|++. .-|...+.++...
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG--RKGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCC--CCCeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 44466777776 2255555555554
No 59
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=1.1e-12 Score=148.79 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|-..|..||.++. |.-+||||....+.+.+.-+|+..|+..+.|+|.++.+.|...++.|+. +...| |++|+.|+.
T Consensus 287 K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~i-Lv~TDVaSR 362 (476)
T KOG0330|consen 287 KDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSI-LVCTDVASR 362 (476)
T ss_pred cchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcE-EEecchhcc
Confidence 6667888888764 6799999999999999999999999999999999999999999999998 44444 999999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRA 1193 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra 1193 (1377)
||+.+.+|.||+||-|-+-..+..+.||..|-| +.-++..||+.- |-..++|.
T Consensus 363 GLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqy--Dve~~qrI 415 (476)
T KOG0330|consen 363 GLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQY--DVELVQRI 415 (476)
T ss_pred cCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehh--hhHHHHHH
Confidence 999999999999999999999999999999999 888999999984 44444443
No 60
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=2.2e-12 Score=164.89 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=107.9
Q ss_pred ccCcchhHHHHHHHHHHHHhc------CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHH
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQ------GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS 506 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~------g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~ 506 (1377)
+-..|.||..+++-+.....+ +.+|++.+.+|.|||++++.++..|...... .++||||| ..|..||.++|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~-~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKN-PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCC-CeEEEEECcHHHHHHHHHHHH
Confidence 345799999999988876544 3579999999999999999998887754333 57899999 678899999999
Q ss_pred HHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh-hhhcc----ceeEEEEcccccccCchh
Q 000642 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK-YFRRV----KWQYMVLDEAQAIKSSNS 581 (1377)
Q Consensus 507 kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~-~l~~~----~w~~VIlDEAH~iKN~~S 581 (1377)
.+.++.... .++ ...+.... ......|+|||++++..... .+..+ ...+||+||||+.-..
T Consensus 315 ~~~~~~~~~--~~s---~~~L~~~l-------~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-- 380 (667)
T TIGR00348 315 SLQKDCAER--IES---IAELKRLL-------EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-- 380 (667)
T ss_pred hhCCCCCcc--cCC---HHHHHHHH-------hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch--
Confidence 987531111 111 12222211 11235799999999975221 11111 2248999999987432
Q ss_pred HHHHHHH-hccCCceEEeecCCCCC
Q 000642 582 IRWKTLL-SFNCRNRLLLTGTPIQN 605 (1377)
Q Consensus 582 ~r~kal~-~l~~~~rLlLTGTPIQN 605 (1377)
...+.+. .+....+++|||||+..
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 2334453 56778999999999863
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.51 E-value=5e-12 Score=159.23 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=100.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++...+.++...|..|||||......+.+...|...|+++..|+|.....+|.-+...|+.. .| +++|.
T Consensus 405 ~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~V-lIATd 480 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---AV-TVATS 480 (762)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---eE-EEEcc
Confidence 456799999999999888899999999999999999999999999999999998877776555555442 44 89999
Q ss_pred ccccccCcC---------cCCEEEEeCCCCChhhhhHhhhchhccCCcCc
Q 000642 1133 AGGLGINLT---------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKD 1173 (1377)
Q Consensus 1133 AGGlGINLT---------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~ 1173 (1377)
.+|.|+++. +-+.||.||++=+ ..+.|+.||++|.|..-.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~-rid~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENS-RVDLQLRGRSGRQGDPGS 529 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCc-HHHHHhhhcccCCCCcee
Confidence 999999998 7799999999955 466999999999997644
No 62
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.51 E-value=3.1e-14 Score=131.73 Aligned_cols=78 Identities=28% Similarity=0.585 Sum_probs=72.8
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccC
Q 000642 1090 DYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1169 (1377)
Q Consensus 1090 e~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiG 1169 (1377)
.+|+..|+++..++|.++..+|..+++.|+... .. +|++|.++|.|||++.+++||+||++||+..+.|++|||+|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~-~~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGE-IR-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTS-SS-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccC-ce-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 378899999999999999999999999999843 34 4889999999999999999999999999999999999999998
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=2.6e-11 Score=154.19 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..+|..++......|..|||||......+.|...|...|+++..|+|.+...+|+.+...|+. + .| +++|.
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~-g--~V-lIATd 484 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK-G--AV-TVATN 484 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC-C--eE-EEEcc
Confidence 45679999999998877789999999999999999999999999999999999887777777666664 2 34 89999
Q ss_pred ccccccCc---CcCC-----EEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHH
Q 000642 1133 AGGLGINL---TAAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQR 1192 (1377)
Q Consensus 1133 AGGlGINL---TaAd-----tVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~r 1192 (1377)
.+|.|+++ .... +||.||.+=|+..+.|+.||++|.|..-.+ +-|+ |.|+.++.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s--~~~i---s~eD~l~~~ 547 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS--QFFI---SLEDDLLKR 547 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE--EEEE---cchHHHHHh
Confidence 99999999 4666 999999999999999999999999987433 2333 345666653
No 64
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.47 E-value=5.1e-13 Score=143.17 Aligned_cols=163 Identities=25% Similarity=0.308 Sum_probs=116.8
Q ss_pred cCcchhHHHHHHHHHHHHhcC-CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCC-
Q 000642 435 GSLKEYQLKGLQWLVNCYEQG-LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD- 511 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g-~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~- 511 (1377)
.++++||.+++..+.. + .++++..++|.|||..++.++........ .+++|||+| ..+..||..++..+++.
T Consensus 7 ~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 7 EPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4789999999988874 3 68899999999999988877777665443 368999999 77788999999988876
Q ss_pred --CeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh--hhccceeEEEEcccccccC-chhHHHHH
Q 000642 512 --LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKS-SNSIRWKT 586 (1377)
Q Consensus 512 --l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKN-~~S~r~ka 586 (1377)
.....+.+.... ...... ....++|+++||+.+...... +....|+++|+||+|.+.+ ..+..+..
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~--------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKR-EQLRKL--------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred CeEEEEEeCCcchH-HHHHHH--------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 334444443321 111111 112348999999998876555 4455788999999999986 44455555
Q ss_pred HHh-c-cCCceEEeecCCCCCCHHHHH
Q 000642 587 LLS-F-NCRNRLLLTGTPIQNNMAELW 611 (1377)
Q Consensus 587 l~~-l-~~~~rLlLTGTPIQNsm~ELw 611 (1377)
+.. + ...+++++||||.++.-...+
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHHHH
Confidence 444 3 588899999999754433333
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.46 E-value=8.6e-12 Score=158.61 Aligned_cols=104 Identities=23% Similarity=0.388 Sum_probs=87.9
Q ss_pred hCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHH-----HHHHHhcc----CC------CceEEEEecccc
Q 000642 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR-----DMVRDFQH----RS------DIFVFLLSTRAG 1134 (1377)
Q Consensus 1070 ~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~-----~~V~~Fq~----~~------di~VfLLSTrAG 1134 (1377)
..+.+||||++-....+.|.+.|...++ ..|+|.++..+|. .++++|.. .. .. .+|++|+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVa 346 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAG 346 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchh
Confidence 4577999999999999999999998887 8999999999999 77899976 11 23 459999999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCc--EEEEEE
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD--VTVYRL 1179 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~--VtVYRL 1179 (1377)
+.||++.. |+||+++.++ ....|++||++|.|.... |+|+.+
T Consensus 347 erGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 9999988774 688999999999999644 455544
No 66
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=1.2e-12 Score=132.05 Aligned_cols=136 Identities=24% Similarity=0.255 Sum_probs=100.3
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH-HHHHHHHHCC-CCeeEeecCChhhhHHHhhccCcc
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN-WADEISRFCP-DLKTLPYWGGLQERMVLRKNINPK 534 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n-W~~Ei~kf~p-~l~vl~y~Gs~~~rk~lrk~~~~k 534 (1377)
++++...+|.|||.+++.++..+...+ ..+++||+||...+.+ |...+..+.. ...+..+.+.........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEK------ 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHH------
Confidence 679999999999999999999988753 3479999999776555 5666777765 466666666543332221
Q ss_pred cccccCCCeeEEEEechhhhhhhhhh--hccceeEEEEcccccccCchhHHH---HHHHhccCCceEEeecCC
Q 000642 535 RLYRRDAGFHILITSYQLLVADEKYF--RRVKWQYMVLDEAQAIKSSNSIRW---KTLLSFNCRNRLLLTGTP 602 (1377)
Q Consensus 535 ~l~~~~~~f~VvItSYe~l~~d~~~l--~~~~w~~VIlDEAH~iKN~~S~r~---kal~~l~~~~rLlLTGTP 602 (1377)
......+|+++||+.+....... ....|+++|+||+|.+.+...... ...........+++||||
T Consensus 75 ---~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 ---LLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---HhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 11256789999999887654432 245799999999999998776554 344456788899999999
No 67
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.41 E-value=2.6e-11 Score=162.29 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=63.2
Q ss_pred EEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhcc
Q 000642 1099 YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRL 1168 (1377)
Q Consensus 1099 y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRi 1168 (1377)
....+||++.++|..+.+.|++ +.++| |++|.+..+|||+.+.|.||.||++.+.+...|++||++|-
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~-G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKS-GELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHh-CCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 4567899999999999999997 67877 89999999999999999999999999999999999999984
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.41 E-value=4.8e-11 Score=151.01 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=90.0
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
.+..+|||..-...++.+.+.|... ++.++.|+|+++. +.+.+++|..++..+| |+||..++.||++...++||-
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kI-LVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSI-IISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeE-EeccChhhccccccCeeEEEE
Confidence 4568999999999999999999877 7999999999985 4567788854466666 999999999999999999999
Q ss_pred eCCCC------------ChhhhhHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1149 YESDW------------NPTLDLQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1149 yDsdW------------NPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
++... +.+...||.||++|. ++-++|+|+++....
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 97222 444556777777775 679999999998753
No 69
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=1.5e-11 Score=143.22 Aligned_cols=129 Identities=22% Similarity=0.316 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1060 TLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN----YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1060 ~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~----~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
.+..++... ...|+|+|+........|...|. .-+.++-.+.|+.....|..++++|.. ++|.| |+++++.+
T Consensus 419 ~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~v-LIcSD~la 494 (620)
T KOG0350|consen 419 AVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINV-LICSDALA 494 (620)
T ss_pred hHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceE-EEehhhhh
Confidence 444555543 36799999988877666665554 446677779999999999999999998 88988 88889999
Q ss_pred cccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000642 1136 LGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQK 1196 (1377)
Q Consensus 1136 lGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K 1196 (1377)
.||++-..|.||+||+|-.-.....|.||..|-||. -++|.|+... |+|.+-....|
T Consensus 495 RGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~--G~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 495 RGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD--GYAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred cCCcccccceEeecCCCchhhHHHHhhcccccccCC--ceEEEeeccc--cchHHHHHHHH
Confidence 999999999999999999999999999999999985 5677788766 56666655554
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=99.38 E-value=4e-11 Score=160.01 Aligned_cols=103 Identities=19% Similarity=0.150 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe--
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKM---LNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS-- 1130 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~m---LDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS-- 1130 (1377)
.|...|.+++..+ |..+|||++.... .+.|.++|...|+++..++|.+ ++ .+++|.+ +++.|++.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~~-~l~~F~~-G~~~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----ER-KFEKFEE-GEVDVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----HH-HHHHHHC-CCCCEEEEecC
Confidence 4666777777665 4689999998777 9999999999999999999998 23 4599987 778885554
Q ss_pred -ccccccccCcCc-CCEEEEeCCCC------ChhhhhHhhhchhc
Q 000642 1131 -TRAGGLGINLTA-ADTVIFYESDW------NPTLDLQAMDRAHR 1167 (1377)
Q Consensus 1131 -TrAGGlGINLTa-AdtVIfyDsdW------NPt~d~QAmdRaHR 1167 (1377)
|..++.||++.. -..|||||.|= .......+++|.-.
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 789999999998 89999999986 44555666666653
No 71
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.38 E-value=1.2e-12 Score=120.80 Aligned_cols=81 Identities=27% Similarity=0.508 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchh
Q 000642 1087 ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAH 1166 (1377)
Q Consensus 1087 iLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaH 1166 (1377)
.|.++|...++.+..++|+++.++|..++++|+... . .+|++|.+++.|+|+..+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467888888999999999999999999999999843 3 56899999999999999999999999999999999999999
Q ss_pred ccC
Q 000642 1167 RLG 1169 (1377)
Q Consensus 1167 RiG 1169 (1377)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.37 E-value=6e-11 Score=148.77 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=104.4
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
...|..++...+.++...|..|||||......+.|..+|..+|+++..|+|. ..+|...+..|... ...| +++|..
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~-~g~V-tIATnm 462 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR-KGAV-TIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC-CceE-EEEecc
Confidence 4568989988888888899999999999999999999999999999999997 67899999999763 3344 999999
Q ss_pred cccccCcCc-------CCEEEEeCCCCChhhhhHhhhchhccCCcCcE
Q 000642 1134 GGLGINLTA-------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1377)
Q Consensus 1134 GGlGINLTa-------AdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~V 1174 (1377)
+|.|+++.. .-+||.||.+=|+.++.|+.||++|.|..-..
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999999877 66999999999999999999999999987443
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=4.8e-10 Score=140.13 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=108.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..+|..++..+...|..||||+......+.|...|...|+++..|+|... +|...+..|...+. . +|++|.
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g-~-VlVATd 529 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG-R-ITVATN 529 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC-c-EEEEcc
Confidence 4457999999999988777889999999999999999999999999999999754 66666666765332 3 489999
Q ss_pred ccccccCcC---cCC-----EEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000642 1133 AGGLGINLT---AAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1133 AGGlGINLT---aAd-----tVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
.+|.|+++. ... +||.||.+=|+..+.|++||++|.|.. -+.+-|+ |.|+.++.+-.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~--G~s~~~i---s~eD~l~~~~~ 594 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDP--GSYEAIL---SLEDDLLQSFL 594 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCC--eEEEEEe---chhHHHHHhhh
Confidence 999999987 333 999999999999999999999999975 3334444 34677775543
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.34 E-value=2.4e-10 Score=136.42 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYRK--YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~g--~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
.|.|+|||+.-....+.+...|...+ +.+..++|.++..+|.... .+. +|++|.+.+.||++.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceEE-
Confidence 57899999999999999999998764 5788999999988886542 333 4999999999999975 5777
Q ss_pred eCCCCChhhhhHhhhchh
Q 000642 1149 YESDWNPTLDLQAMDRAH 1166 (1377)
Q Consensus 1149 yDsdWNPt~d~QAmdRaH 1166 (1377)
++ +-++....|++||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 66 457788899999874
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.31 E-value=3.4e-10 Score=145.12 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=103.0
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCee
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKT 514 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~v 514 (1377)
.|.++|.++++.+.... .+...+|.-.+|.|||...+.++...... + +.+||++| ..+..||.+.|.++++ ..+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-g--~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-G--KQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc-C--CeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 68999999998887532 34568899999999999998777665543 2 57999999 5678899999988774 578
Q ss_pred EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccC--chhHHH-----HHH
Q 000642 515 LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS--SNSIRW-----KTL 587 (1377)
Q Consensus 515 l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN--~~S~r~-----kal 587 (1377)
.+++|........ ..|..- .....+|||.|.+.+.. .--+..+|||||+|...- ....++ ..+
T Consensus 219 ~~~~s~~s~~~r~-~~~~~~----~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 219 AVLHSGLSDGERL-DEWRKA----KRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred EEEECCCCHHHHH-HHHHHH----HcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 8888764332221 122110 12456899999876642 123578999999998632 221111 111
Q ss_pred Hh-ccCCceEEeecCCC
Q 000642 588 LS-FNCRNRLLLTGTPI 603 (1377)
Q Consensus 588 ~~-l~~~~rLlLTGTPI 603 (1377)
+. ......+++||||.
T Consensus 289 ra~~~~~~~il~SATps 305 (679)
T PRK05580 289 RAKLENIPVVLGSATPS 305 (679)
T ss_pred HhhccCCCEEEEcCCCC
Confidence 22 24456789999995
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=9.6e-10 Score=134.66 Aligned_cols=159 Identities=16% Similarity=0.254 Sum_probs=108.6
Q ss_pred cCcchhHHHHHHHHHHHHhc--CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH-HHHHHHHHHCC-
Q 000642 435 GSLKEYQLKGLQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCP- 510 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~--g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~-nW~~Ei~kf~p- 510 (1377)
..|-..|...++=+..=... ..|-+|=-|+|.|||+.+...+....+.. .-..+.+|..++. |-...+.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 35788999998765432222 23446777999999999876665555432 3568889988765 78889999997
Q ss_pred -CCeeEeecCChhhh--HHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHH
Q 000642 511 -DLKTLPYWGGLQER--MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTL 587 (1377)
Q Consensus 511 -~l~vl~y~Gs~~~r--k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal 587 (1377)
++.|....|+.+.. +.....+ .....|+||-|+..+..+..+ .+..+||+||=|++.-. +|.+..
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l-------~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~--QR~~L~ 405 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQL-------ASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVH--QRLALR 405 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHH-------hCCCCCEEEEcchhhhcceee---cceeEEEEeccccccHH--HHHHHH
Confidence 46667777875433 2222221 235678999999887655443 25689999999999543 232222
Q ss_pred Hhcc-CCceEEeecCCCCCCHH
Q 000642 588 LSFN-CRNRLLLTGTPIQNNMA 608 (1377)
Q Consensus 588 ~~l~-~~~rLlLTGTPIQNsm~ 608 (1377)
..=. .+|.|.||||||.-+++
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHHH
Confidence 2224 68999999999998765
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.24 E-value=1.1e-09 Score=134.38 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=97.0
Q ss_pred CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCC
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1377)
+...|||+.-.+..+-+.++|...|++...++|++..++|...-++|++ .++.| +++|-|-|.|||=..--.||+||.
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~i-iVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKV-MVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcE-EEEeccccCccCCCCceEEEEecC
Confidence 4458999999999999999999999999999999999999999999997 55666 899999999999999999999999
Q ss_pred CCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1152 DWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1152 dWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
|=+....-|=+|||+|-|..-.+.+ |...+
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail--l~~~~ 337 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL--LYSPE 337 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE--eeccc
Confidence 9999999999999999998755443 44433
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.23 E-value=2.6e-10 Score=152.57 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=90.7
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCC--
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDL-- 512 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l-- 512 (1377)
.+.++|..++..++ .|.+.++.-.+|.|||.-++.++.++... + ..+|||+| ..|..|+.+.+.+++..+
T Consensus 78 ~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g--~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 78 EPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK-G--KRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred CCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 47889998877665 48888999999999998666555555432 2 57999999 566788999999988642
Q ss_pred e---eEeecCChhhhH--HHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccC
Q 000642 513 K---TLPYWGGLQERM--VLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 513 ~---vl~y~Gs~~~rk--~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN 578 (1377)
. +..|+|...... ...+.. ....++|+|+|.+.+......+.. .++++||||||++-.
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l-------~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERI-------ENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHH-------hcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 234677543221 111111 124589999999998766554544 799999999999854
No 79
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.23 E-value=2.1e-09 Score=126.39 Aligned_cols=126 Identities=20% Similarity=0.367 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhh--CCCeEEEEeccchHHHHHHHH----HHh------------------CCCcEEEecCCCCHHHHH
Q 000642 1057 KLQTLDILLKRLRA--ENHRVLLFAQMTKMLNILEDY----MNY------------------RKYRYLRLDGSSTIMDRR 1112 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~--~ghKVLIFSQ~t~mLDiLee~----L~~------------------~g~~y~rLDGstk~edR~ 1112 (1377)
.|..|..+|.+... ...|+|||+.-.++.+.=.+. |.. .+.++.||+||+.+++|+
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 55667777776543 356999999999988754444 333 245799999999999999
Q ss_pred HHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1113 DMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1113 ~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
.....|.+..+. +||+|++++.||+|...+-||-||+|..|+-...++||.-|+|-.-.-.. |+...-.|
T Consensus 488 s~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 488 SVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999985555 59999999999999999999999999999999999999999998865443 34444344
No 80
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.21 E-value=7e-11 Score=140.23 Aligned_cols=121 Identities=20% Similarity=0.327 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHHHhh---C----CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEE
Q 000642 1055 SGKLQTLDILLKRLRA---E----NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVF 1127 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~---~----ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~Vf 1127 (1377)
..|...|..+|..... . -++++||..-.++.|.|+.+|...++++.-|+|.-+..+|...+++|.+ ..+.|
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pv- 390 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPV- 390 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcce-
Confidence 3455555555554331 1 2599999999999999999999999999999999999999999999998 55666
Q ss_pred EEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1128 LLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1128 LLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
|+.|..+..|||....+|||+||.+=+-..+..++||.+|.|++-..|++
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 89999999999999999999999999999999999999999999665554
No 81
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.18 E-value=3.3e-09 Score=137.49 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCeEEEEeccchHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~---~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
+.++|||..-...++.+.+.|.. .++.++.|+|+++.++|..+++.|.. +..+| |+||..+..||++.+.++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkV-lVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKV-VLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEE-EEecchHhhcccccCceEEEE
Confidence 46799999999999999999976 47899999999999999999999976 45666 899999999999999999999
Q ss_pred eCCC----CChhh--------------hhHhhhchhccCCcCcEEEEEEEeCCCH
Q 000642 1149 YESD----WNPTL--------------DLQAMDRAHRLGQTKDVTVYRLICKETV 1185 (1377)
Q Consensus 1149 yDsd----WNPt~--------------d~QAmdRaHRiGQtk~VtVYRLItkgTI 1185 (1377)
++.. +||.. ..||.|||+|. ++-++|||+++...
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQH 338 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHH
Confidence 8864 56654 45777777775 68899999987643
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.18 E-value=6.5e-09 Score=132.10 Aligned_cols=127 Identities=19% Similarity=0.166 Sum_probs=104.2
Q ss_pred HHHhhCCCeEEEEeccchHHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCC
Q 000642 1066 KRLRAENHRVLLFAQMTKMLNILEDYMNYRK-YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAAD 1144 (1377)
Q Consensus 1066 ~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g-~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAd 1144 (1377)
.++.++...+|||++-..+...+...|++.+ ..+..=|||.+.+.|...-++|.. +++++ ++||.+.-+||+.-..|
T Consensus 247 ~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lra-vV~TSSLELGIDiG~vd 324 (814)
T COG1201 247 AELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKA-VVATSSLELGIDIGDID 324 (814)
T ss_pred HHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceE-EEEccchhhccccCCce
Confidence 3333334479999999999999999999887 777777999999999999999998 55888 88999999999999999
Q ss_pred EEEEeCCCCChhhhhHhhhch-hccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000642 1145 TVIFYESDWNPTLDLQAMDRA-HRLGQTKDVTVYRLICKETVEEKILQRASQKNT 1198 (1377)
Q Consensus 1145 tVIfyDsdWNPt~d~QAmdRa-HRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~ 1198 (1377)
.||.|-||-.-+...|++||+ ||+|.+ --+.+|+.+ .++.+--.+..+..
T Consensus 325 lVIq~~SP~sV~r~lQRiGRsgHr~~~~---Skg~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 325 LVIQLGSPKSVNRFLQRIGRAGHRLGEV---SKGIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred EEEEeCCcHHHHHHhHhccccccccCCc---ccEEEEecC-HHHHHHHHHHHHHH
Confidence 999999999999999999998 567764 345566666 66666555555443
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.16 E-value=5.6e-09 Score=135.43 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=85.2
Q ss_pred HHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCC---CcEEEecCCCCHHHH----HHHHHHhccCCCc--eEEEEec
Q 000642 1061 LDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRK---YRYLRLDGSSTIMDR----RDMVRDFQHRSDI--FVFLLST 1131 (1377)
Q Consensus 1061 L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g---~~y~rLDGstk~edR----~~~V~~Fq~~~di--~VfLLST 1131 (1377)
+..++..+ ..|.+||||++..+...-+.++|...+ +.+..++|.....+| .++++.|..++.. ..+|++|
T Consensus 550 l~~i~~~~-~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 550 LQRMIAAA-NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 33344433 468899999999999999999998764 679999999999999 5688899433331 2349999
Q ss_pred cccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCc
Q 000642 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQt 1171 (1377)
.....||++ .+|.||....+ .....|++||+||-|..
T Consensus 629 QViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 629 QVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred cchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999 57988887665 46788999999999974
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=2.4e-09 Score=132.81 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=72.7
Q ss_pred HHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCC--CC-h--
Q 000642 1085 LNILEDYMNYR--KYRYLRLDGSSTIMDR--RDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESD--WN-P-- 1155 (1377)
Q Consensus 1085 LDiLee~L~~~--g~~y~rLDGstk~edR--~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsd--WN-P-- 1155 (1377)
.+.+++.|... +.++.++|+.++...+ ..++++|.. +++.| |+.|...+-|+++...+.|+++|.| .| |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCE-EEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 34455555544 7889999998876555 889999987 55666 8999999999999999999877665 22 4
Q ss_pred -------hhhhHhhhchhccCCcCcEEEEEEEe
Q 000642 1156 -------TLDLQAMDRAHRLGQTKDVTVYRLIC 1181 (1377)
Q Consensus 1156 -------t~d~QAmdRaHRiGQtk~VtVYRLIt 1181 (1377)
....|+.||++|-|..-.|.|..+-.
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 46799999999988877776554333
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.15 E-value=4.9e-09 Score=136.42 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHhccCCCceEE
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILE----DYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVF 1127 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLe----e~L~~~g----~~y~rLDGstk~edR~~~V~~Fq~~~di~Vf 1127 (1377)
.+...+..+...+..+|-+.|+|+-...+..++. ..+...+ .......|++..++|+.+..+|.. +++.+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~- 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLG- 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccE-
Confidence 3556667777788888999999999999998886 4444445 678889999999999999999998 55555
Q ss_pred EEeccccccccCcCcCCEEEEeCCCC-ChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000642 1128 LLSTRAGGLGINLTAADTVIFYESDW-NPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1128 LLSTrAGGlGINLTaAdtVIfyDsdW-NPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
++||-|.-+||.+-+.|.||.+--|= .-..-.|+.||++|-||. ..++-..-.+-++..++..-.
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~--~l~~~v~~~~~~d~yy~~~p~ 433 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQE--SLVLVVLRSDPLDSYYLRHPE 433 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCC--ceEEEEeCCCccchhhhhCcH
Confidence 89999999999999999999998776 446678999999999955 333333336667776655433
No 86
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.13 E-value=8.3e-10 Score=131.49 Aligned_cols=121 Identities=20% Similarity=0.250 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|++.|-.++..+.- ...||||....-.+-+..+|...|+.+..|.|.|...+|..+++.+.. -.++| |+||+-.+.
T Consensus 259 klq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rI-LVsTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRI-LVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEE-EEecchhhc
Confidence 77788888877643 468999998888999999999999999999999999999999999987 45666 999999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
||+-..+|.||++|++-|......+||||+|.|-. -..|. ||+.+
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT-~~~~~ 379 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH-GAAVT-LLEDE 379 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhccccccc-ceeEE-Eeccc
Confidence 99999999999999999999999999999999964 44444 44443
No 87
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=1.2e-08 Score=119.01 Aligned_cols=118 Identities=18% Similarity=0.327 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
-|+..|..+|... ...|+|||+..-...++....|... +...+-|||.++...|...++.|...++- .|++|+.
T Consensus 241 eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDV 316 (567)
T KOG0345|consen 241 EKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDV 316 (567)
T ss_pred HHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehh
Confidence 4888888888873 4679999999999999888877654 78899999999999999999999883332 4899999
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
++.||+..+.|.||.||||-+|.....+.||..|.|..-.-.|+
T Consensus 317 aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 317 AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99999999999999999999999999999999999987655554
No 88
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.09 E-value=3.7e-09 Score=135.80 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=104.7
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCC-CCe
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCP-DLK 513 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p-~l~ 513 (1377)
.|.++|..++.-.+ ++ |.|.+++-.+|.|||+.+...|..-...+ .++.+-||| .+|..+=..||.+|-. +++
T Consensus 31 el~~~qq~av~~~~--~~-~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGL--LS-DENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccc--cC-CCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 79999999985332 23 78999999999999999977666555443 369999999 7788888888885432 799
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhh--hccceeEEEEcccccccCc-hh-----HHHH
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYF--RRVKWQYMVLDEAQAIKSS-NS-----IRWK 585 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l--~~~~w~~VIlDEAH~iKN~-~S-----~r~k 585 (1377)
|.+++|...... .+...++|+||||+.+-+-.... .-...++|||||+|.+... .- -.++
T Consensus 106 V~~~TgD~~~~~------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 106 VGISTGDYDLDD------------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred EEEecCCcccch------------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 999999754321 12367899999999985421111 2235689999999999765 22 2222
Q ss_pred HHHhccCCceEEeecC
Q 000642 586 TLLSFNCRNRLLLTGT 601 (1377)
Q Consensus 586 al~~l~~~~rLlLTGT 601 (1377)
....-..-+.+.||||
T Consensus 174 ~~~~~~~~rivgLSAT 189 (766)
T COG1204 174 MRRLNELIRIVGLSAT 189 (766)
T ss_pred HHhhCcceEEEEEeee
Confidence 2221122467889999
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=5.7e-08 Score=124.06 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=107.9
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+.+.++.+.|.-|||||......+.|..+|...|+++..|+|.....+|..+...|+.. . ++++|.
T Consensus 425 t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATN 500 (896)
T PRK13104 425 TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATN 500 (896)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEecc
Confidence 456799999999999999999999999999999999999999999999999999999999999999985 2 499999
Q ss_pred ccccccCcC--------------------------------------cCCEEEEeCCCCChhhhhHhhhchhccCCcCcE
Q 000642 1133 AGGLGINLT--------------------------------------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1377)
Q Consensus 1133 AGGlGINLT--------------------------------------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~V 1174 (1377)
.+|.|+++. +.=+||--+.+=|--+|.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999998865 223899999999999999999999999987554
Q ss_pred EEE
Q 000642 1175 TVY 1177 (1377)
Q Consensus 1175 tVY 1177 (1377)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 444
No 90
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.09 E-value=1.8e-09 Score=124.63 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHH-----hhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHH-----------
Q 000642 1052 LTDSGKLQTLDILLKRL-----RAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMV----------- 1115 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~L-----k~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V----------- 1115 (1377)
...|||+..|..|+..+ ...+.+|||.++-.+++|+||.+|...+++|-|++|.+-..+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~ 171 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSN 171 (297)
T ss_dssp HHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S------------
T ss_pred HHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccccc
Confidence 34599999999999999 67789999999999999999999999999999999976654444333
Q ss_pred -HHhc--cCCCceEEEEecccccc----ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHH
Q 000642 1116 -RDFQ--HRSDIFVFLLSTRAGGL----GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEK 1188 (1377)
Q Consensus 1116 -~~Fq--~~~di~VfLLSTrAGGl----GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEEr 1188 (1377)
.... ....+.|+|++|.-.-. .++-...|.||-+|+.+|+....-.+=|.+--.+ +.+-|+|||+.+|||--
T Consensus 172 ~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi 250 (297)
T PF11496_consen 172 NSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHI 250 (297)
T ss_dssp ----------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHH
T ss_pred ccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHH
Confidence 1111 13457788887765433 1334567999999999999988766666654444 89999999999999988
Q ss_pred HHHHHHHH
Q 000642 1189 ILQRASQK 1196 (1377)
Q Consensus 1189 I~~ra~~K 1196 (1377)
++..-...
T Consensus 251 ~L~~~~~~ 258 (297)
T PF11496_consen 251 ELCFPKSS 258 (297)
T ss_dssp HHHHTTTS
T ss_pred HHHccCcc
Confidence 87765533
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.08 E-value=5.2e-09 Score=143.01 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEeccchH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec----
Q 000642 1059 QTLDILLKRLRAENHRVLLFAQMTKM---LNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST---- 1131 (1377)
Q Consensus 1059 ~~L~~LL~~Lk~~ghKVLIFSQ~t~m---LDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST---- 1131 (1377)
..|..+|..+ |..+|||++-... .+.|.++|...|+++..++|. |...+++|.+ +++.| |++|
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~V-LVaT~s~~ 389 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDY-LIGVATYY 389 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCE-EEEecCCC
Confidence 4566666654 6789999987654 589999999999999999984 8999999998 77777 7777
Q ss_pred cccccccCcCc-CCEEEEeCCCC---ChhhhhHh-------------hhchhccCCc
Q 000642 1132 RAGGLGINLTA-ADTVIFYESDW---NPTLDLQA-------------MDRAHRLGQT 1171 (1377)
Q Consensus 1132 rAGGlGINLTa-AdtVIfyDsdW---NPt~d~QA-------------mdRaHRiGQt 1171 (1377)
..++.||++.. ...|||||.|= |...+.|. .+|+.|-|..
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 46889999998 89999999987 55544444 4899998875
No 92
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.07 E-value=1.5e-09 Score=118.83 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=105.5
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHH-HHHHHHHHHhc-ccCCcEEEEeC-cccHHHHHHHHHHHCC--
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA-MAFLAHLAEEK-NIWGPFLVVAP-ASVLNNWADEISRFCP-- 510 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQs-IAlLa~L~e~~-~i~gp~LIV~P-~Sll~nW~~Ei~kf~p-- 510 (1377)
.+++||.+++.-+.. |.+.++...+|.|||+.. +.++..+.... +....+||||| ..++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 478999999976665 789999999999999985 44555555431 22346899999 5678889999988864
Q ss_pred CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhh--hhhhccceeEEEEcccccccCch-hHHHHH-
Q 000642 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE--KYFRRVKWQYMVLDEAQAIKSSN-SIRWKT- 586 (1377)
Q Consensus 511 ~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~--~~l~~~~w~~VIlDEAH~iKN~~-S~r~ka- 586 (1377)
+.++..+.|........... ....+|+|+|.+.+.... ..+.--.++++|+||+|.+-+.. ......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~---------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~ 167 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL---------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREI 167 (203)
T ss_pred CceEEEEECCCCHHHHHHHh---------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHH
Confidence 56777777765443322111 135689999987764421 11222357899999999986543 222222
Q ss_pred HHhcc-CCceEEeecCCC
Q 000642 587 LLSFN-CRNRLLLTGTPI 603 (1377)
Q Consensus 587 l~~l~-~~~rLlLTGTPI 603 (1377)
+..+. ....+++||||-
T Consensus 168 ~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 168 LKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHhCCcccEEEEEeccCC
Confidence 23333 566899999997
No 93
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=3.4e-08 Score=115.80 Aligned_cols=127 Identities=24% Similarity=0.358 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
+-..|..|+.++. ..+++||.+-......|.-.|-..|++..-|+|+.++++|-+.++.|.. .+|.| |++|+.++.
T Consensus 413 Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidv-LiaTDvAsR 488 (691)
T KOG0338|consen 413 REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDV-LIATDVASR 488 (691)
T ss_pred cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCE-EEEechhhc
Confidence 3345666777766 4589999999999999999999999999999999999999999999987 77877 999999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCc-CcEEEEEEEeCCCHHHHHHHH
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT-KDVTVYRLICKETVEEKILQR 1192 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQt-k~VtVYRLItkgTIEErI~~r 1192 (1377)
||++.+.-|||+|+.|-.--++..+.||.-|-|.. +.|+ |+.++ |.+|++-
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt---lvgE~--dRkllK~ 540 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT---LVGES--DRKLLKE 540 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE---Eeccc--cHHHHHH
Confidence 99999999999999999999999999999999975 5555 56666 5555543
No 94
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.04 E-value=2.3e-09 Score=113.43 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCC--CeeE
Q 000642 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD--LKTL 515 (1377)
Q Consensus 439 ~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~--l~vl 515 (1377)
|+|.+.+.-+. +|.+-|+...+|.|||...+..+....... ..+.+||++| ..++.|=.+++.+++.. .++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 68999987665 477899999999999999986555443332 2358999999 56788888899888854 6777
Q ss_pred eecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh--hhccceeEEEEcccccccCc-hhHHHHHH-Hhc-
Q 000642 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSS-NSIRWKTL-LSF- 590 (1377)
Q Consensus 516 ~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKN~-~S~r~kal-~~l- 590 (1377)
.++|...........+ ....+|+|+|++.+...... +.-...++||+||+|.+-.. ....+..+ ..+
T Consensus 77 ~~~~~~~~~~~~~~~~--------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL--------SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp EESTTSCHHHHHHHHH--------HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccc--------cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 7777543221111111 24578999999998765543 12234799999999999663 23333333 233
Q ss_pred --cCCceEEeecCCCCCCHHH
Q 000642 591 --NCRNRLLLTGTPIQNNMAE 609 (1377)
Q Consensus 591 --~~~~rLlLTGTPIQNsm~E 609 (1377)
...+.+++||||- .++..
T Consensus 149 ~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 149 RFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TTTTSEEEEEESSST-HHHHH
T ss_pred CCCCCcEEEEeeCCC-hhHhh
Confidence 2356899999997 55544
No 95
>COG4889 Predicted helicase [General function prediction only]
Probab=99.00 E-value=8.8e-09 Score=125.92 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=104.1
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHC-CC
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFC-PD 511 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~-p~ 511 (1377)
...|||||..++.-..+.+..+-.|=|-..+|.|||.+++-+.-.++. ..+|.+|| -+|+.|=-+|...-. -+
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 357999999999988887777778888888999999999999888886 47899999 567777544432110 01
Q ss_pred Ce-eEeec-------------------CChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh--hhhhhccceeEEE
Q 000642 512 LK-TLPYW-------------------GGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMV 569 (1377)
Q Consensus 512 l~-vl~y~-------------------Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d--~~~l~~~~w~~VI 569 (1377)
+. +.++. -+...+.++...-. ..+...--||.+||+.+-.- .+..---.|++||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~----~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEH----RQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHH----hhccCCcEEEEEcccchHHHHHHHHcCCCCccEEE
Confidence 11 11221 12222222222211 12445667999999998553 3333335799999
Q ss_pred EcccccccC------chhHHHH--HHHhccCCceEEeecCCC
Q 000642 570 LDEAQAIKS------SNSIRWK--TLLSFNCRNRLLLTGTPI 603 (1377)
Q Consensus 570 lDEAH~iKN------~~S~r~k--al~~l~~~~rLlLTGTPI 603 (1377)
+||||+--. ..|...+ .-..+++..||-|||||-
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 999999633 1111111 113346778999999993
No 96
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.00 E-value=9.8e-10 Score=135.97 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=122.8
Q ss_pred cCCchhccCcchhHHHHHHHHHHHHhcCCC-EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHH
Q 000642 428 QTPELFKGSLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEI 505 (1377)
Q Consensus 428 ~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~n-GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei 505 (1377)
..|.+..-.+|.||..+++-+..-..+|.+ .+|+..+|.|||.+||++|--|..... .+++|.++- .+|+.|=..+|
T Consensus 157 ~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 157 YIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-VKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch-hheeeEEechHHHHHHHHHHH
Confidence 334445668999999999999999988875 689999999999999999998886544 489999998 88899999999
Q ss_pred HHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh----h---hhccceeEEEEcccccccC
Q 000642 506 SRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK----Y---FRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 506 ~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~----~---l~~~~w~~VIlDEAH~iKN 578 (1377)
..|.|+..++...-. +.-+.++.|+|.||+++..... + +..-.||+||+||||+-
T Consensus 236 ~~~~P~~~~~n~i~~----------------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-- 297 (875)
T COG4096 236 EDFLPFGTKMNKIED----------------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-- 297 (875)
T ss_pred HHhCCCccceeeeec----------------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh--
Confidence 999998766543221 1112468999999999976432 2 33346999999999984
Q ss_pred chhHHHHHHHhccCCceEEeecCCCC
Q 000642 579 SNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1377)
Q Consensus 579 ~~S~r~kal~~l~~~~rLlLTGTPIQ 604 (1377)
..+.|+.++.+-...+++|||||-+
T Consensus 298 -i~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 298 -IYSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred -HHhhhHHHHHHHHHHHHhhccCccc
Confidence 4456777777777778888999976
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1e-07 Score=121.13 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..+|...+......|..|||||......+.|...|...|+++..|+|.....++.-+...++. .- ++++|.
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATn 496 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATN 496 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce--EEEEec
Confidence 44569999999998888899999999999999999999999999999999998764444444444444 22 499999
Q ss_pred ccccccCcC---cCC-----EEEEeCCCCChhhhhHhhhchhccCCcCcE
Q 000642 1133 AGGLGINLT---AAD-----TVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1377)
Q Consensus 1133 AGGlGINLT---aAd-----tVIfyDsdWNPt~d~QAmdRaHRiGQtk~V 1174 (1377)
.+|.|+++. ... +||.++.+=|+.++.|+.||++|.|..-..
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999984 556 999999999999999999999999987554
No 98
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.98 E-value=6.9e-08 Score=125.60 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCeEEEEeccchHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNY---RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVI 1147 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~---~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVI 1147 (1377)
.+..+|||..-...++.+.+.|.. .++.++.|+|+++.++|+.++..|.. +..+| |+||..+..||++...++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkV-lvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKV-VLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEE-EEecchHHhcccccCceEEE
Confidence 356899999999999999999986 57889999999999999999999875 45555 99999999999999999999
Q ss_pred EeCCC----CChh--------------hhhHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1148 FYESD----WNPT--------------LDLQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1148 fyDsd----WNPt--------------~d~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
.++.. ++|. ...||.||++|. .+-++|||+++...+
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE 342 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh
Confidence 97654 4443 346767776665 689999999987554
No 99
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=98.96 E-value=2.6e-09 Score=125.38 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=112.8
Q ss_pred cccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcc-CCCceEEEE
Q 000642 1051 LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLL 1129 (1377)
Q Consensus 1051 li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLL 1129 (1377)
+++.+.|..+|.++|... ....+|||.+..+..|.|.+-|...||++++|||+-++++|..++++|.+ ..+| |+
T Consensus 498 m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dI---lV 572 (673)
T KOG0333|consen 498 MVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDI---LV 572 (673)
T ss_pred EecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCE---EE
Confidence 467788999999999886 45799999999999999999999999999999999999999999999998 3454 88
Q ss_pred eccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1130 STRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1130 STrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
+|+++|.||+....++||+||..-+-.....+|||.+|-|+.- ++.-|++..
T Consensus 573 aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G--taiSflt~~ 624 (673)
T KOG0333|consen 573 ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG--TAISFLTPA 624 (673)
T ss_pred EecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCc--eeEEEeccc
Confidence 9999999999999999999999999999999999999999874 444566654
No 100
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=98.95 E-value=6.7e-08 Score=114.23 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=112.4
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
-|+..|-..+.... ..|.|||...-+-..++.+.+... |+..+-|+|.+++..|.++..+|... -.++|.+|+.
T Consensus 299 ~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv 374 (758)
T KOG0343|consen 299 DKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFCTDV 374 (758)
T ss_pred hHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEeehh
Confidence 47777777776643 458999999999999888887654 99999999999999999999999873 3456999999
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQK 1196 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K 1196 (1377)
++.||++.+.|-||-||.|=+-.....+.||.-|.+-.-...+|-+ -+-||.|+.++..|
T Consensus 375 ~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 375 AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKK 434 (758)
T ss_pred hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998777766533 33457777777766
No 101
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.5e-09 Score=116.03 Aligned_cols=123 Identities=20% Similarity=0.347 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|+..|..|-..|-- ...+|||.-.+..|+|.+-|...++.+..++|.+.+++|.+++.+|.+ +.-+| |++|+.=+.
T Consensus 253 KfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~Srv-LitTDVwaR 328 (400)
T KOG0328|consen 253 KFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRV-LITTDVWAR 328 (400)
T ss_pred hHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceE-EEEechhhc
Confidence 88888888877642 479999999999999999999999999999999999999999999998 55566 999999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCH
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETV 1185 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTI 1185 (1377)
||+.+..+.||+||.|-|+.....++||.+|.|.+ -.+..|+...-+
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainFVk~~d~ 375 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKSDDL 375 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEEecHHHH
Confidence 99999999999999999999999999999999975 355677776533
No 102
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=4.5e-07 Score=115.92 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=105.2
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++..++.++...|..|||||......+.|..+|...|+++..|+|. ..+|...+..|...+ ..| +++|.
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~-g~V-tIATN 486 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP-GAV-TIATN 486 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC-ceE-EEecc
Confidence 45579999999999988899999999999999999999999999999999995 679999999998733 344 99999
Q ss_pred ccccccCcCc--------------------------------------CCEEEEeCCCCChhhhhHhhhchhccCCcCcE
Q 000642 1133 AGGLGINLTA--------------------------------------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1377)
Q Consensus 1133 AGGlGINLTa--------------------------------------AdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~V 1174 (1377)
.+|.|+++.- .=+||.-+.+=|--+|.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999988642 34899999999999999999999999998655
Q ss_pred EEE
Q 000642 1175 TVY 1177 (1377)
Q Consensus 1175 tVY 1177 (1377)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 444
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=4.9e-07 Score=115.34 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=106.8
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+-+.++.+.|..|||||.....-+.|..+|..+|+++..|+|.....+|..+...|+... ++++|.
T Consensus 430 t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATn 505 (908)
T PRK13107 430 TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATN 505 (908)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecC
Confidence 4567999999999999999999999999999999999999999999999999999999999999999843 499999
Q ss_pred ccccccCcC-------------------------------------cCCEEEEeCCCCChhhhhHhhhchhccCCcCcEE
Q 000642 1133 AGGLGINLT-------------------------------------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVT 1175 (1377)
Q Consensus 1133 AGGlGINLT-------------------------------------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~Vt 1175 (1377)
.+|.|+++. +.=+||--+.+=|--+|.|..|||+|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999864 2238999999999999999999999999874433
Q ss_pred E
Q 000642 1176 V 1176 (1377)
Q Consensus 1176 V 1176 (1377)
.
T Consensus 586 f 586 (908)
T PRK13107 586 F 586 (908)
T ss_pred E
Confidence 3
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.82 E-value=8.9e-07 Score=114.65 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=90.1
Q ss_pred HHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCc
Q 000642 1063 ILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR--KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINL 1140 (1377)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~--g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINL 1140 (1377)
.+++++..+| +|-.-.+-...+.-+.+.|... ..++...||.|+..+-.+++.+|.+ ++..| |+||----.||++
T Consensus 795 AI~REl~RgG-QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dV-Lv~TTIIEtGIDI 871 (1139)
T COG1197 795 AILRELLRGG-QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDV-LVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHHhcCC-EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCE-EEEeeeeecCcCC
Confidence 4566665544 5544455566777777777665 6678899999999999999999998 56666 8888899999999
Q ss_pred CcCCEEEEeCCCC-ChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1141 TAADTVIFYESDW-NPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1141 TaAdtVIfyDsdW-NPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
..|||+|+-+.|- --+..-|=-||++|= .++-+-|-|+..
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~ 912 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPP 912 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecC
Confidence 9999999998873 556777989999884 356788877775
No 105
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.76 E-value=4.2e-07 Score=108.12 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=94.5
Q ss_pred eEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE----e
Q 000642 1074 RVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF----Y 1149 (1377)
Q Consensus 1074 KVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf----y 1149 (1377)
..|||+...+--..|..+|+.+|++..-+|++.+..+|+.+-..|+. .++-+ +++|.|.|.|+++. |+.||| +
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~-VVTTAAL~AGVDFP-ASQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAA-VVTTAALAAGVDFP-ASQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcce-EeehhhhhcCCCCc-hHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999997 67777 88999999999997 567777 3
Q ss_pred CCCC-ChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1150 ESDW-NPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1150 DsdW-NPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
--+| +|.-.+|-.|||+|-|-...-.||-++-.
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 3455 99999999999999998888888888764
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.75 E-value=1e-06 Score=117.11 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCeEEEEeccchHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYRKYR---YLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~g~~---y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
...||||..-...++.+.+.|...++. ++-|+|+.+.++|..+.+. .+..+| |+||..+..||++.+.++||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkI-IVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRI-VLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeE-EEeccHHhhccccCcceEEEE
Confidence 468999999999999999999988765 6688999999999988654 345555 899999999999999999999
Q ss_pred eC---------------CCCCh---hhhhHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1149 YE---------------SDWNP---TLDLQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1149 yD---------------sdWNP---t~d~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
++ .+-.| +...|+.|||+|. ++-.+|||+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 75 22223 3456777777666 578899999976544
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.72 E-value=4.8e-06 Score=94.44 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=104.1
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCC
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDL 512 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l 512 (1377)
.|+|-++|.++-+-|+.-..+..--|+-.-+|.|||=+.-..|.+....+ +.+.|..| .-++..-...+..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 58999999999999998888888889999999999999988888776543 57889999 556666667777777777
Q ss_pred eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEccccccc--CchhHHHHHHHh-
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIK--SSNSIRWKTLLS- 589 (1377)
Q Consensus 513 ~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iK--N~~S~r~kal~~- 589 (1377)
.+...+|..... + + + .-||-||++++.- . -.||++|+||+..+- +..+. ..++..
T Consensus 172 ~I~~Lyg~S~~~-----f--------r-~-plvVaTtHQLlrF-k-----~aFD~liIDEVDAFP~~~d~~L-~~Av~~a 229 (441)
T COG4098 172 DIDLLYGDSDSY-----F--------R-A-PLVVATTHQLLRF-K-----QAFDLLIIDEVDAFPFSDDQSL-QYAVKKA 229 (441)
T ss_pred CeeeEecCCchh-----c--------c-c-cEEEEehHHHHHH-H-----hhccEEEEeccccccccCCHHH-HHHHHHh
Confidence 877777753321 0 1 1 2256666666532 1 268999999999972 33332 333332
Q ss_pred c-cCCceEEeecCCC
Q 000642 590 F-NCRNRLLLTGTPI 603 (1377)
Q Consensus 590 l-~~~~rLlLTGTPI 603 (1377)
. .....+.|||||-
T Consensus 230 rk~~g~~IylTATp~ 244 (441)
T COG4098 230 RKKEGATIYLTATPT 244 (441)
T ss_pred hcccCceEEEecCCh
Confidence 2 3456799999984
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.65 E-value=1.6e-06 Score=112.64 Aligned_cols=127 Identities=19% Similarity=0.266 Sum_probs=102.2
Q ss_pred hCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcc---CCCceEEEEeccccccccCcCcCCEE
Q 000642 1070 AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH---RSDIFVFLLSTRAGGLGINLTAADTV 1146 (1377)
Q Consensus 1070 ~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~---~~di~VfLLSTrAGGlGINLTaAdtV 1146 (1377)
.+|-||+|-++-.+-.--+.+.|...+.+++.||+..+..+|.+.+....+ ..+.+| +++|.+--.|+++. .|.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~I-vVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFI-VVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeE-EEEeeEEEEEeccc-cCee
Confidence 346789999988888888888888888889999999999999999987663 344455 99999999999998 5655
Q ss_pred EEeCCCCCh-hhhhHhhhchhccC--CcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000642 1147 IFYESDWNP-TLDLQAMDRAHRLG--QTKDVTVYRLICKETVEEKILQRASQKNTVQQ 1201 (1377)
Q Consensus 1147 IfyDsdWNP-t~d~QAmdRaHRiG--Qtk~VtVYRLItkgTIEErI~~ra~~K~~l~~ 1201 (1377)
|- |+ .| ....||.|||||-| ....++||...-.+....+.++....+...-.
T Consensus 516 IT-e~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 516 IT-EL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred ee-cC--CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccc
Confidence 53 32 33 46689999999999 67889999999998888888887777655443
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.62 E-value=4.1e-07 Score=116.57 Aligned_cols=124 Identities=20% Similarity=0.274 Sum_probs=109.3
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
.+++..|...|..+...|.+||||+.-....+.|.++|...|+++..++|.++..+|..++..|.. +.+.| |++|...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~v-lV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceE-EEEeCHH
Confidence 567888888888888899999999999999999999999999999999999999999999999986 55655 8899999
Q ss_pred ccccCcCcCCEEEEeCCC-----CChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1135 GLGINLTAADTVIFYESD-----WNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsd-----WNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
+.|+++..+++||++|.+ =++....|++||++| + +.-.++-|+...
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR-~--~~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N--VNGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccC-C--CCCEEEEEecCC
Confidence 999999999999999974 478889999999999 4 345577777643
No 110
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.61 E-value=5.5e-06 Score=104.86 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-------CCcEEEEeC-cccHHHHHHHHH-HHCC-CCeeEeecC
Q 000642 450 NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-------WGPFLVVAP-ASVLNNWADEIS-RFCP-DLKTLPYWG 519 (1377)
Q Consensus 450 ~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-------~gp~LIV~P-~Sll~nW~~Ei~-kf~p-~l~vl~y~G 519 (1377)
-.|....|.|++..+|.|||+.+...|.++...+.. .-.++-|+| ++|..--.+-+. ++.| ++.|.-++|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 357889999999999999999997776666554211 126788999 555443333332 2332 688999999
Q ss_pred ChhhhHHHhhccCcccccccCCCeeEEEEechhhh-------hhhhhhhccceeEEEEcccccccCchhH-----HHHHH
Q 000642 520 GLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV-------ADEKYFRRVKWQYMVLDEAQAIKSSNSI-----RWKTL 587 (1377)
Q Consensus 520 s~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~-------~d~~~l~~~~w~~VIlDEAH~iKN~~S~-----r~kal 587 (1377)
...--+. .-...+|+|||.+..- .|...+. ...+|||||.|.+...... .++.+
T Consensus 201 D~ql~~t------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtl 266 (1230)
T KOG0952|consen 201 DTQLTKT------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTL 266 (1230)
T ss_pred cchhhHH------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHH
Confidence 6432211 1245678999877651 1222333 4579999999999875443 33333
Q ss_pred Hh----ccCCceEEeecCC
Q 000642 588 LS----FNCRNRLLLTGTP 602 (1377)
Q Consensus 588 ~~----l~~~~rLlLTGTP 602 (1377)
+. ...-+.++||||-
T Consensus 267 r~vessqs~IRivgLSATl 285 (1230)
T KOG0952|consen 267 RLVESSQSMIRIVGLSATL 285 (1230)
T ss_pred HHHHhhhhheEEEEeeccC
Confidence 22 2445678999994
No 111
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.57 E-value=6.4e-07 Score=102.05 Aligned_cols=236 Identities=17% Similarity=0.220 Sum_probs=146.8
Q ss_pred hhccCcchhHHHHHHHHHHHHh------cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 432 LFKGSLKEYQLKGLQWLVNCYE------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 432 ~l~~~Lr~YQlkGL~WL~~ly~------~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
.-.+.|=.-|+++|-+.....+ ++.|-+|+|.+|.||--|.-++|.+...+.. .+++.|-+...|..-=.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChhhhhHHHHHH
Confidence 3468899999999988876665 3556799999999999999999987765543 35666667777777666666
Q ss_pred HHHC-CCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh----h---hhc-cce------eEEEE
Q 000642 506 SRFC-PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK----Y---FRR-VKW------QYMVL 570 (1377)
Q Consensus 506 ~kf~-p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~----~---l~~-~~w------~~VIl 570 (1377)
.... ..+.+.+... +..... ......|+.+||.+++.... + |.+ +.| .+||+
T Consensus 112 ~DIG~~~i~v~~l~~-----------~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivf 178 (303)
T PF13872_consen 112 RDIGADNIPVHPLNK-----------FKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVF 178 (303)
T ss_pred HHhCCCcccceechh-----------hccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEe
Confidence 5432 1222322211 100000 12345799999999988732 1 222 234 48999
Q ss_pred cccccccCchh------HHHHHHHhc----cCCceEEeecCCCCC--CHHHHHHHHHhhc-CCCCCCHHHHHHHHhhhcc
Q 000642 571 DEAQAIKSSNS------IRWKTLLSF----NCRNRLLLTGTPIQN--NMAELWALLHFIM-PTLFDSHEQFNEWFSKGIE 637 (1377)
Q Consensus 571 DEAH~iKN~~S------~r~kal~~l----~~~~rLlLTGTPIQN--sm~ELwsLL~FL~-P~lFds~~eF~ewFsk~ie 637 (1377)
||+|+.||..+ +...+++.+ ..-+.+-.|||.... ||. +..=|-+-. -++|.+.++|.+-+.+.
T Consensus 179 DEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~g-- 255 (303)
T PF13872_consen 179 DECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEKG-- 255 (303)
T ss_pred ccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee-eeeeccccCCCCCCCCHHHHHHHHHhc--
Confidence 99999999755 566666555 334578899999853 442 111111112 24678888887755432
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHH
Q 000642 638 SHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQA 696 (1377)
Q Consensus 638 ~~~~~~~~lne~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~ 696 (1377)
. +.-.++-...+...-.+++|.. .+-.-...++.++||+.|..+|+.
T Consensus 256 --G-----v~amE~vA~dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 256 --G-----VGAMEMVAMDLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred --C-----chHHHHHHHHHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 1 1111122222233345666643 233456678899999999999975
No 112
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.57 E-value=2e-06 Score=111.88 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=97.8
Q ss_pred CCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeC
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyD 1150 (1377)
.+.-.||||...++.+.+..+|...|++..-++.++...+|+.+..+|.. .++.| ++.|=|-|.|||-...--||+|-
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~V-ivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRV-IVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeE-EEEEeeccCCCCCCceeEEEECC
Confidence 35678999999999999999999999999999999999999999999998 45777 88899999999999999999999
Q ss_pred CCCChhhhhHhhhchhccCCcCcEEEEE
Q 000642 1151 SDWNPTLDLQAMDRAHRLGQTKDVTVYR 1178 (1377)
Q Consensus 1151 sdWNPt~d~QAmdRaHRiGQtk~VtVYR 1178 (1377)
.+=+---.-|..|||+|-|+-..++.|.
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEec
Confidence 9988888899999999999998877764
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.56 E-value=5.5e-07 Score=114.82 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
.|++..|...|......|.+||||+.-..+.+.|.++|...|+++..++|.++..+|..++.+|.. +.+.| |++|...
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~V-LV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDV-LVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceE-EEEcChh
Confidence 578888888888888889999999999999999999999999999999999999999999999976 56666 8899999
Q ss_pred ccccCcCcCCEEEEeCC-----CCChhhhhHhhhchhccCCcCcEEEEEEEeCCC
Q 000642 1135 GLGINLTAADTVIFYES-----DWNPTLDLQAMDRAHRLGQTKDVTVYRLICKET 1184 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDs-----dWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgT 1184 (1377)
+.|+++..++.||++|. +=+.....|++||+.|.+ .-.|+-|+...|
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999995 447778899999999963 345666666554
No 114
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.54 E-value=1e-07 Score=106.16 Aligned_cols=125 Identities=20% Similarity=0.328 Sum_probs=113.3
Q ss_pred cccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe
Q 000642 1051 LLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1051 li~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS 1130 (1377)
++..+-|+..|-.|+.+|.- ...||||..+....+|..-++..||.+..++..|..+.|..+.++|.+ +.++. |++
T Consensus 303 fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crn-LVc 378 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRN-LVC 378 (459)
T ss_pred eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccce-eee
Confidence 46778999999999999864 378999999999999999999999999999999999999999999998 77887 888
Q ss_pred ccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEe
Q 000642 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLIC 1181 (1377)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLIt 1181 (1377)
|+---.||+.++.|.||+||-+-|+.....++||.+|.|-- -.-..||+
T Consensus 379 tDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl--GlAInLit 427 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL--GLAINLIT 427 (459)
T ss_pred hhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc--ceEEEEEe
Confidence 99999999999999999999999999999999999999964 33445664
No 115
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.54 E-value=3.3e-07 Score=104.97 Aligned_cols=126 Identities=21% Similarity=0.357 Sum_probs=112.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+++-|+.....++..+ ..+.|||||..-.-|.|-|..-|...|+..--|+|.....||...+++|.+ +.++| |+.|+
T Consensus 447 ~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrI-LvaTD 523 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRI-LVATD 523 (629)
T ss_pred ccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEE-EEEec
Confidence 6788998777777765 567899999999999999999999999999999999999999999999998 78888 89999
Q ss_pred ccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
.++.||++....||++||-+-|-.....++||.+|-|.|- +-..|++.+
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G--~sis~lt~~ 572 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG--TSISFLTRN 572 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc--ceEEEEehh
Confidence 9999999999999999999999999999999999999764 334456654
No 116
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.51 E-value=4.6e-07 Score=103.28 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=103.5
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
..|.++|..| ..+..-| ..|||++-.++...|...|...|+.+..|+|.+..++|.+++.+|.. +.-.| |+.|...
T Consensus 315 ~~K~~~l~~l-yg~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kV-LitTnV~ 390 (477)
T KOG0332|consen 315 DDKYQALVNL-YGLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKV-LITTNVC 390 (477)
T ss_pred hhHHHHHHHH-Hhhhhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceE-EEEechh
Confidence 3599999884 4443434 67899999999999999999999999999999999999999999998 55566 9999999
Q ss_pred ccccCcCcCCEEEEeCCCC------ChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1135 GLGINLTAADTVIFYESDW------NPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdW------NPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
+.||+....+.||+||.+- .|.....|+||.+|.|.+- .+++||-.
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG--~a~n~v~~ 442 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG--LAINLVDD 442 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc--eEEEeecc
Confidence 9999999999999999974 4678899999999999653 33445543
No 117
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.44 E-value=8.7e-07 Score=100.92 Aligned_cols=132 Identities=21% Similarity=0.291 Sum_probs=111.8
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
..-.|+..|.+.|.+ ..-.||||+.-..-.|-|.+||-..|+..+-|+|+-..++|...|+.|.... -.| |+.|+
T Consensus 405 kqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk-KDV-LVATD 479 (610)
T KOG0341|consen 405 KQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK-KDV-LVATD 479 (610)
T ss_pred HhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC-Cce-EEEec
Confidence 345787777776654 4568999999999999999999999999999999999999999999999833 234 89999
Q ss_pred ccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHH
Q 000642 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQ 1191 (1377)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ 1191 (1377)
.++-|+++++-.|||+||.+-.-.+...+|||.+|-|.|--.| .||-+++-|.-+++
T Consensus 480 VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~esvLlD 536 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEESVLLD 536 (610)
T ss_pred chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHHHHHH
Confidence 9999999999999999999988899999999999999875433 46777776655544
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.43 E-value=0.00042 Score=89.47 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++..-+.++.+.|.-|||-|.....-..|..+|...|+++-.|.-... +.-..+|++=-..+. +.++|.
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~AG~~g~---VTIATN 624 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGAGKLGA---VTVATN 624 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhcCCCCc---EEEeec
Confidence 4468999999999999999999999999999999999999999999999987532 333456655433333 378999
Q ss_pred ccccccCcCc--------CCEEEEeCCCCChhhhhHhhhchhccCCcCcEEE
Q 000642 1133 AGGLGINLTA--------ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1133 AGGlGINLTa--------AdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtV 1176 (1377)
.+|.|.++.- .=+||.-..+=|..+|.|..||++|.|..-....
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 9999977643 2489999999999999999999999998755433
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=0.0002 Score=90.13 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+-+.++.+.|.-|||.++....-..|..+|...|+++-.|.... .++-..+|++=-..+. +-++|.
T Consensus 408 t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~-~~~EA~IIa~AG~~ga---VTIATN 483 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN-DAEEARIIAEAGKYGA---VTVSTQ 483 (764)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc-hHhHHHHHHhcCCCCc---EEEEec
Confidence 446799999999999999999999999999999999999999999999998763 3444556665433333 478999
Q ss_pred ccccccCcC---------------cCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1133 AGGLGINLT---------------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1133 AGGlGINLT---------------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
-+|.|.++. +.=+||--+.+=|--+|.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 999997764 234899999999999999999999999987554433
No 120
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=98.38 E-value=9e-07 Score=104.34 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=110.7
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
..++..|..+|++.... .||+||+.-..+.+++.+.|.+..+.+.-|+|..++..|.....+|...... +|++|+++
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVa 390 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVA 390 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchh
Confidence 34577888888886553 8999999999999999999999999999999999999999999999874332 59999999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
+.|++..+.|-||-||+|-||..++.|+||..|-|-+ -.-+-|++.. |...+.-++
T Consensus 391 ARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~--G~alL~l~p~--El~Flr~LK 446 (543)
T KOG0342|consen 391 ARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE--GKALLLLAPW--ELGFLRYLK 446 (543)
T ss_pred hccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC--ceEEEEeChh--HHHHHHHHh
Confidence 9999999999999999999999999999999997755 3334455543 344444333
No 121
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.35 E-value=1.8e-06 Score=98.12 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=109.2
Q ss_pred ccccchHHHHHHHHHHHhh-CCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe
Q 000642 1052 LTDSGKLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~-~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS 1130 (1377)
+...+|-..|..+|+.... +..-++||.|-++.-.+|.-.|...++...-|++-+...+|-..+.+|.. ..++| |+.
T Consensus 233 ~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~i-lia 310 (442)
T KOG0340|consen 233 VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARI-LIA 310 (442)
T ss_pred cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccE-EEE
Confidence 4567899999999999877 56789999999999999999999999999999999999999999999998 45666 899
Q ss_pred ccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCc
Q 000642 1131 TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1377)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQt 1171 (1377)
|++++.||+....+.||+||.|-.|-....+.||.-|-|..
T Consensus 311 TDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~ 351 (442)
T KOG0340|consen 311 TDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRK 351 (442)
T ss_pred echhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCC
Confidence 99999999999999999999999999999999988888765
No 122
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.34 E-value=2.2e-06 Score=103.33 Aligned_cols=121 Identities=24% Similarity=0.350 Sum_probs=106.8
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYM-NYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L-~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
..-||+.++.+++..... -.||||-|...-..-|-+.| .+-++.+-.++|.-+..+|...+++|.. +.|.| |++|
T Consensus 370 se~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~Iwv-LicT 445 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWV-LICT 445 (593)
T ss_pred cchhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeE-EEeh
Confidence 346899999888887643 47999999998888888888 7889999999999999999999999998 88988 9999
Q ss_pred cccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCc-CcEEEE
Q 000642 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT-KDVTVY 1177 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQt-k~VtVY 1177 (1377)
...+.||++.+++.||+||-+=.-.....++||.+|-|+. +.+|.|
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999999999999988888888899999999987 555555
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.34 E-value=5.1e-05 Score=100.78 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=58.2
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-ccHHHHHH-HHH---HHCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWAD-EIS---RFCP 510 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~-Ei~---kf~p 510 (1377)
..|++|.+-+.-+......|..+++-..+|.|||+-.+.-+...+. . ..+++|.||. +|..||.. ++. +.++
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~--~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~ 321 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T--EKPVVISTNTKVLQSQLLEKDIPLLNEILN 321 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C--CCeEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 5799999999888877777878888889999999987666555543 2 2589999995 45668754 543 4433
Q ss_pred -CCeeEeecC
Q 000642 511 -DLKTLPYWG 519 (1377)
Q Consensus 511 -~l~vl~y~G 519 (1377)
++++.+..|
T Consensus 322 ~~~~~~~~kG 331 (850)
T TIGR01407 322 FKINAALIKG 331 (850)
T ss_pred CCceEEEEEc
Confidence 466665554
No 124
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=8e-06 Score=104.96 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCCCCCcccccc--ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q 000642 1042 PMQSFDPAKLLT--DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQ 1119 (1377)
Q Consensus 1042 ~~~~~d~~~li~--~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq 1119 (1377)
|+.+.|...++. ...|+.+|..++..+...|..|||||......+.|..+|...|+++..|++ +..+|...+-.|.
T Consensus 566 P~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~A 643 (1025)
T PRK12900 566 PIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEA 643 (1025)
T ss_pred CcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhc
Confidence 444556555554 445999999999999889999999999999999999999999999999997 6779999999998
Q ss_pred cCCCceEEEEeccccccccCcCcCC--------EEEEeCCCCChhhhhHhhhchhccCCcCcE
Q 000642 1120 HRSDIFVFLLSTRAGGLGINLTAAD--------TVIFYESDWNPTLDLQAMDRAHRLGQTKDV 1174 (1377)
Q Consensus 1120 ~~~di~VfLLSTrAGGlGINLTaAd--------tVIfyDsdWNPt~d~QAmdRaHRiGQtk~V 1174 (1377)
..+ ..| +++|..+|.|+++.-.+ +||.++.+=+.-++.|+.||++|.|..-..
T Consensus 644 G~~-g~V-tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 644 GQK-GAV-TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CCC-CeE-EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 743 334 99999999999987433 459999999999999999999999987443
No 125
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.9e-06 Score=96.78 Aligned_cols=128 Identities=20% Similarity=0.325 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
|+..|..|... -..++||+.-.+-++.|.+.|..++++..-++|.+...+|..++..|.. +..+| |++|.-.+-
T Consensus 252 k~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrv-lIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRV-LITTDLLAR 325 (397)
T ss_pred cccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceE-Eeecccccc
Confidence 88888888873 3468999999999999999999999999999999999999999999998 56677 889999999
Q ss_pred ccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000642 1137 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1137 GINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
||+++..+-||+||.|=|+.....++||++|.|- .-.+..++++.+ +++++...
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~gr--kg~~in~v~~~d--~~~lk~ie 379 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGR--KGVAINFVTEED--VRDLKDIE 379 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCC--CceeeeeehHhh--HHHHHhHH
Confidence 9999999999999999999999999999999995 445567777664 44444433
No 126
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.15 E-value=0.00046 Score=89.84 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHHHhhC---------CCeEEEEeccchHHHHHHHHHHh
Q 000642 1054 DSGKLQTLDILLKRLRAE---------NHRVLLFAQMTKMLNILEDYMNY 1094 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~---------ghKVLIFSQ~t~mLDiLee~L~~ 1094 (1377)
..+|...|.++|.++..+ +.+|||||++.++...|.+||..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 578999999999886543 47899999999999999999966
No 127
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.13 E-value=8.2e-06 Score=96.14 Aligned_cols=127 Identities=20% Similarity=0.331 Sum_probs=112.0
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAG 1134 (1377)
.-||..|...|.....+| +||||..=....+-|..-|...+|++..|+|++...+|.+.+.+|.. ..+.| |+.|+.+
T Consensus 452 ~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~V-lvatDva 528 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPV-LVATDVA 528 (731)
T ss_pred HHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCce-EEEeeHh
Confidence 358888888888876665 89999988888899999999999999999999999999999999997 44555 8889999
Q ss_pred ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1135 GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1135 GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
..|+++..--|||+||---.-.+..|++||..|-|-. -..|.|||..-.+
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9999999999999999987777888999999999977 6789999987554
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=0.0014 Score=84.82 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=97.2
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+-+.++.+.|.-|||-+.....-..|..+|..+|+++-.|.-.-. ++-.++|++=-..+. +-++|-
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~AG~~Ga---VTIATN 505 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQAGRPGA---LTIATN 505 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHcCCCCCc---EEEecc
Confidence 5567999999999999999999999999999999999999999999988876532 344456664332233 378999
Q ss_pred ccccccCcC-------------------------------------cCCEEEEeCCCCChhhhhHhhhchhccCCcCcEE
Q 000642 1133 AGGLGINLT-------------------------------------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVT 1175 (1377)
Q Consensus 1133 AGGlGINLT-------------------------------------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~Vt 1175 (1377)
-+|.|-++. +.=+||--+.+=|--+|.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999997763 2348999999999999999999999999875544
Q ss_pred EE
Q 000642 1176 VY 1177 (1377)
Q Consensus 1176 VY 1177 (1377)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 33
No 129
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.09 E-value=1.5e-05 Score=103.24 Aligned_cols=176 Identities=15% Similarity=0.211 Sum_probs=113.1
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHH---------HHHHCCC--CeeEeecCChh-
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADE---------ISRFCPD--LKTLPYWGGLQ- 522 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~E---------i~kf~p~--l~vl~y~Gs~~- 522 (1377)
.|.-+..++|.|||.+++.+|.+|...++. ..||||||..- .....+- |...+++ +...+|.....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 356789999999999999999999887765 79999999643 2223322 2222322 45556654321
Q ss_pred --h----hHHHhhccCcccccccCCCeeEEEEechhhhhhhh------hh--h--ccce-------eEEEEcccccccCc
Q 000642 523 --E----RMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK------YF--R--RVKW-------QYMVLDEAQAIKSS 579 (1377)
Q Consensus 523 --~----rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~------~l--~--~~~w-------~~VIlDEAH~iKN~ 579 (1377)
. -..++.|...... .....+|+|++.+.+.++.. .+ . ...| -.||+||+|++..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~--~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~- 215 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQ--NSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR- 215 (986)
T ss_pred ccccccChHHHHHHHhcccc--CCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-
Confidence 1 1233333321100 11257899999998866421 11 1 1223 3799999999965
Q ss_pred hhHHHHHHHhccCCceEEeecCCCC-------CC--HHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccc
Q 000642 580 NSIRWKTLLSFNCRNRLLLTGTPIQ-------NN--MAELWALLHFIMPTLFDSHEQFNEWFSKGIESHA 640 (1377)
Q Consensus 580 ~S~r~kal~~l~~~~rLlLTGTPIQ-------Ns--m~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~ 640 (1377)
..+.|+++..++..+.|.-|||--. |. ..+++.|+.= +++.+.|+....|.|+-..
T Consensus 216 ~~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V~~ 280 (986)
T PRK15483 216 DNKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDIFY 280 (986)
T ss_pred chHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEEee
Confidence 3458899999999999999999754 11 1124444333 4778999999999887643
No 130
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.05 E-value=0.0004 Score=79.30 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=107.0
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCee
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKT 514 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~v 514 (1377)
..||-|+.+++-... |...+|--.+|-||++.- -....-..|-.||||| -||+..-.-.++...-+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcy------qlpal~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCY------QLPALCADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhh------hhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 689999999986554 777899999999998632 1111112378899999 57777666677766555555
Q ss_pred EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhh-------ccceeEEEEcccccccC-------ch
Q 000642 515 LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFR-------RVKWQYMVLDEAQAIKS-------SN 580 (1377)
Q Consensus 515 l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~-------~~~w~~VIlDEAH~iKN-------~~ 580 (1377)
+-...+..+-+.+... +.++++.|..+.+|.+.+.....+.. ...|.++-+||+|-... .-
T Consensus 164 lnansske~~k~v~~~-----i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAA-----ITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred ccCcccHHHHHHHHHH-----HcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcch
Confidence 5445555555444333 34577899999999999877655543 34688999999997632 22
Q ss_pred hHHHHHHHhccCCceEEeecCCCCCCHHH
Q 000642 581 SIRWKTLLSFNCRNRLLLTGTPIQNNMAE 609 (1377)
Q Consensus 581 S~r~kal~~l~~~~rLlLTGTPIQNsm~E 609 (1377)
+...-.-+.|.....+.||+|...|-+.|
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d 267 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDD 267 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhH
Confidence 33333335567777888998876554443
No 131
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.97 E-value=1.5e-05 Score=90.73 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=76.0
Q ss_pred HHHHHhccCCCceEEEEeccccccccCcCcC----C---E-EEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCC
Q 000642 1113 DMVRDFQHRSDIFVFLLSTRAGGLGINLTAA----D---T-VIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKET 1184 (1377)
Q Consensus 1113 ~~V~~Fq~~~di~VfLLSTrAGGlGINLTaA----d---t-VIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgT 1184 (1377)
...+.|++ ++..|.++| +|||.||.|++- | + -|.++++|+.....|-+||+||-||..+..+.-+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45678998 467787776 999999999963 2 3 478999999999999999999999998754444555557
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Q 000642 1185 VEEKILQRASQKNTVQQLVMTGGH 1208 (1377)
Q Consensus 1185 IEErI~~ra~~K~~l~~~Vi~g~~ 1208 (1377)
.|.|......+|.+-..+...|..
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 799999999999988877777654
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.86 E-value=0.00045 Score=89.23 Aligned_cols=72 Identities=32% Similarity=0.437 Sum_probs=58.1
Q ss_pred CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE-----eCCC---C---ChhhhhHhhhc
Q 000642 1096 KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF-----YESD---W---NPTLDLQAMDR 1164 (1377)
Q Consensus 1096 g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf-----yDsd---W---NPt~d~QAmdR 1164 (1377)
.|.+..=+.+++..+|...=+-|.+ +.+.| |+||....-|+||. |+|||+ |||. | .|--+.|..||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~-g~iqv-lvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD-GHIQV-LVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc-CceeE-EEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 4566667778888888776666665 88998 99999999999997 688886 7774 4 57788999999
Q ss_pred hhccCC
Q 000642 1165 AHRLGQ 1170 (1377)
Q Consensus 1165 aHRiGQ 1170 (1377)
|+|-+-
T Consensus 684 agrp~~ 689 (1674)
T KOG0951|consen 684 AGRPQY 689 (1674)
T ss_pred cCCCcc
Confidence 999763
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.82 E-value=0.00012 Score=75.30 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcc
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPK 534 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k 534 (1377)
|.--+|---+|.|||-..+--+..-+-.. .+++||+.|.-++. .|+.+...+..+. |+-+...+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~---------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR---------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS-----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec----------
Confidence 33446777899999999876543322222 26899999987764 3444444444432 22211111
Q ss_pred cccccCCCeeEEEEechhhhhhh-hhhhccceeEEEEcccccccCchhHHHHHHHh-c--c-CCceEEeecCCC
Q 000642 535 RLYRRDAGFHILITSYQLLVADE-KYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS-F--N-CRNRLLLTGTPI 603 (1377)
Q Consensus 535 ~l~~~~~~f~VvItSYe~l~~d~-~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~-l--~-~~~rLlLTGTPI 603 (1377)
.....--|-+++|.++..-. ......+|++||+||+|-. ++.|...+-... + . ....+++||||-
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred ---cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 01133347778888875431 2333468999999999985 455555444332 2 2 235799999995
No 134
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=97.79 E-value=0.00012 Score=93.81 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=106.7
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
...|+..|.+||..... ..++|||++--.-.|.|-+-|...||.++-|+|..+..+|...+++|.+ ....+|+.|..
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~--~~~~LLvaTsv 672 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN--GVVNLLVATSV 672 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc--cCceEEEehhh
Confidence 46799999999998765 7799999999999999999999999999999999999999999999998 34456999999
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeC
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICK 1182 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItk 1182 (1377)
..-||+...-..||+||-+=--.....|.||..|-|-+- .-|-||..
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999998755555677777777777665 55666666
No 135
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.74 E-value=0.0015 Score=80.80 Aligned_cols=244 Identities=18% Similarity=0.270 Sum_probs=137.0
Q ss_pred ccCCchhccCcchhHHHHHHHHHHHHhc------CCCEEEEeCCCCcH--HHHHHHHHHHHHHhcccCCcEEEEeCcccH
Q 000642 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQ------GLNGILADEMGLGK--TIQAMAFLAHLAEEKNIWGPFLVVAPASVL 498 (1377)
Q Consensus 427 v~qP~~l~~~Lr~YQlkGL~WL~~ly~~------g~nGILADEMGLGK--TIQsIAlLa~L~e~~~i~gp~LIV~P~Sll 498 (1377)
+..|..=.+.|---||+++.|.....+. .-|-+|.|--|.|| ||-.|-|=-||..++ +..+|-|..-|-
T Consensus 255 lalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRK---rAlW~SVSsDLK 331 (1300)
T KOG1513|consen 255 LALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRK---RALWFSVSSDLK 331 (1300)
T ss_pred EecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccc---eeEEEEeccccc
Confidence 4456656688999999999998766652 33568999988887 666666667776442 345555666666
Q ss_pred HHHHHHHHHHC-CCCeeEeecCChhhhHHHhhccCcccc--cccCCCeeEEEEechhhhhhh-----hh---hhc-cce-
Q 000642 499 NNWADEISRFC-PDLKTLPYWGGLQERMVLRKNINPKRL--YRRDAGFHILITSYQLLVADE-----KY---FRR-VKW- 565 (1377)
Q Consensus 499 ~nW~~Ei~kf~-p~l~vl~y~Gs~~~rk~lrk~~~~k~l--~~~~~~f~VvItSYe~l~~d~-----~~---l~~-~~w- 565 (1377)
..=.+.+.... +++.|... .++-..+-- -+....-.|+..||..+.-+. +| |.+ +.|
T Consensus 332 fDAERDL~DigA~~I~V~al----------nK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~ 401 (1300)
T KOG1513|consen 332 FDAERDLRDIGATGIAVHAL----------NKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWC 401 (1300)
T ss_pred cchhhchhhcCCCCccceeh----------hhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHh
Confidence 66666665542 33333221 111100000 011233469999999986542 22 211 234
Q ss_pred -----eEEEEcccccccC-------chhHHHHHHHhc----cCCceEEeecCCCC--CCHHHHHHHHHhhcCCCCCCHHH
Q 000642 566 -----QYMVLDEAQAIKS-------SNSIRWKTLLSF----NCRNRLLLTGTPIQ--NNMAELWALLHFIMPTLFDSHEQ 627 (1377)
Q Consensus 566 -----~~VIlDEAH~iKN-------~~S~r~kal~~l----~~~~rLlLTGTPIQ--Nsm~ELwsLL~FL~P~lFds~~e 627 (1377)
.+||+||+|+.|| ..++.-++++.| .-.+.+-.|||=-. .||.=+--|=-+=--+.|..+.+
T Consensus 402 Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~RLGlWGegtaf~eF~e 481 (1300)
T KOG1513|consen 402 GEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMVRLGLWGEGTAFPEFEE 481 (1300)
T ss_pred hhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhhhhccccCCCcCccHHH
Confidence 5899999999999 456677777665 33455666776432 34432111111111234444444
Q ss_pred HHHHHhhhcccccccCCCcchHHHHHHHHHHHHHHhHHhHhhhhhcCCCceEEEEEecCCHHHHHHHHHH
Q 000642 628 FNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAI 697 (1377)
Q Consensus 628 F~ewFsk~ie~~~~~~~~lne~ql~rLh~iLkpfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l 697 (1377)
|-. .+|+.... .-.+-..-|-++...+-|- -.+-.-...+-.++|++.-+..|+.-
T Consensus 482 Fi~----AvEkRGvG-----AMEIVAMDMK~rGmYiARQ-----LSFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 482 FIH----AVEKRGVG-----AMEIVAMDMKLRGMYIARQ-----LSFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred HHH----HHHhcCCc-----eeeeeehhhhhhhhhhhhh-----ccccCceEEEEecccCHHHHHHHHHH
Confidence 433 23332211 1112234455555555441 12334456677899999999999864
No 136
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.69 E-value=0.00014 Score=97.63 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHhh-CCCeEEEEeccchHHHHHHHHHHhCCC---cEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1057 KLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKY---RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~-~ghKVLIFSQ~t~mLDiLee~L~~~g~---~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
++..+...+..+.. ....||||..-...++.+.+.|...++ .++-|+|+++.++|..+ |+..+..+| |+||.
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v---f~~~~~rkI-VLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV---FQPHSGRRI-VLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH---hCCCCCceE-EEecc
Confidence 44445555554433 456899999999999999999987654 58889999999999887 444334455 89999
Q ss_pred ccccccCcCcCCEEEEeCC----CCCh--------------hhhhHhhhchhccCCcCcEEEEEEEeCCCHHH
Q 000642 1133 AGGLGINLTAADTVIFYES----DWNP--------------TLDLQAMDRAHRLGQTKDVTVYRLICKETVEE 1187 (1377)
Q Consensus 1133 AGGlGINLTaAdtVIfyDs----dWNP--------------t~d~QAmdRaHRiGQtk~VtVYRLItkgTIEE 1187 (1377)
.+..||++.+.++||-++. -+|| +...||.|||+|.| +-++|||+++...+.
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 9999999999999998773 2222 45678889998887 788999999775543
No 137
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.55 E-value=0.038 Score=70.78 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=105.1
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHH-HHH-CCCCe
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEI-SRF-CPDLK 513 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei-~kf-~p~l~ 513 (1377)
.-++|.+-+ ...+.+...++....-.|||..+--+|-...+.... +-++-|+| ++++.|=.-++ .+| ++.+.
T Consensus 512 Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~-~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 512 PDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-DVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC-CEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 345676644 344677888899999999999998777665554443 78999999 66777777676 455 34333
Q ss_pred e-EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh--hh-h--ccceeEEEEcccccccCc-hhHHHHH
Q 000642 514 T-LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YF-R--RVKWQYMVLDEAQAIKSS-NSIRWKT 586 (1377)
Q Consensus 514 v-l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~--~l-~--~~~w~~VIlDEAH~iKN~-~S~r~ka 586 (1377)
. ...+|.-.. .+- -......|+||-.+.+-+-.- .. + --+..|||+||+|.|.|. .+..|..
T Consensus 587 rg~sl~g~ltq-----EYs------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 587 RGVSLLGDLTQ-----EYS------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred cchhhHhhhhH-----Hhc------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH
Confidence 2 223443211 110 012356799998876633210 00 0 115689999999999885 4777888
Q ss_pred HHhccCCceEEeecCCCCCCHHHHHHHHH
Q 000642 587 LLSFNCRNRLLLTGTPIQNNMAELWALLH 615 (1377)
Q Consensus 587 l~~l~~~~rLlLTGTPIQNsm~ELwsLL~ 615 (1377)
+..+-.--.|+|||| ++|...++-.|+
T Consensus 656 ll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 656 LLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred HHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 877766778999999 567666665555
No 138
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.54 E-value=0.0005 Score=91.73 Aligned_cols=143 Identities=21% Similarity=0.196 Sum_probs=93.8
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccC
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNIN 532 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~ 532 (1377)
.|.+|++-|-.|.|||+++.=+...+.+...+ ..++|||- .-|-.|-.++|..+.......+ .......|+..+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~-~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKN-PKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCC-CeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 45689999999999999987766666655333 34566665 6677799999998875544433 1222333443332
Q ss_pred cccccccCCCeeEEEEechhhhhhhhh----hhccceeEEEEcccccccCchhHHHHHHH-hccCCceEEeecCCCCCCH
Q 000642 533 PKRLYRRDAGFHILITSYQLLVADEKY----FRRVKWQYMVLDEAQAIKSSNSIRWKTLL-SFNCRNRLLLTGTPIQNNM 607 (1377)
Q Consensus 533 ~k~l~~~~~~f~VvItSYe~l~~d~~~----l~~~~w~~VIlDEAH~iKN~~S~r~kal~-~l~~~~rLlLTGTPIQNsm 607 (1377)
. ..-.|+|||-+.+.....- ....+.-+||+||||+--... ..+.+. .|..-.-++.|||||.-.-
T Consensus 348 ~-------~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~--~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 348 D-------GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE--LAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred c-------CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH--HHHHHHHHhccceEEEeeCCcccccc
Confidence 1 1346999999988654322 234577899999999874432 223332 3455677999999998654
Q ss_pred HH
Q 000642 608 AE 609 (1377)
Q Consensus 608 ~E 609 (1377)
..
T Consensus 419 ~~ 420 (962)
T COG0610 419 KD 420 (962)
T ss_pred cc
Confidence 44
No 139
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.50 E-value=0.00088 Score=78.04 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=51.2
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc---CCcEEEEeCccc-HHHHHHHHHHH
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVVAPASV-LNNWADEISRF 508 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i---~gp~LIV~P~Sl-l~nW~~Ei~kf 508 (1377)
..||.|++-++-+...+..|.++|+--.+|.|||+..+..+...+...+. ..+++++++... +.+=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 35999999999999999999999999999999999987665433332222 126677776433 34444555443
No 140
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.50 E-value=0.00088 Score=78.04 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=51.2
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc---CCcEEEEeCccc-HHHHHHHHHHH
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVVAPASV-LNNWADEISRF 508 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i---~gp~LIV~P~Sl-l~nW~~Ei~kf 508 (1377)
..||.|++-++-+...+..|.++|+--.+|.|||+..+..+...+...+. ..+++++++... +.+=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 35999999999999999999999999999999999987665433332222 126677776433 34444555443
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.49 E-value=0.00035 Score=83.92 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHh--hCCCeEEEEeccchHHHHHHHHHHhCCC-cEEEecCCCCHHHHHHHHHHhcc-CCCceEEEEec
Q 000642 1056 GKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKY-RYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLST 1131 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk--~~ghKVLIFSQ~t~mLDiLee~L~~~g~-~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLLST 1131 (1377)
++|.+++.++..+. ..|+=|+-||. +-+--+...+..+|. +++.|.||.+++.|...-..||+ +.++.| |+.|
T Consensus 340 ~pL~v~~~~~~sl~nlk~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAs 416 (700)
T KOG0953|consen 340 SPLVVEETALGSLSNLKPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVAS 416 (700)
T ss_pred CcceehhhhhhhhccCCCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEee
Confidence 34444444444443 35788888885 334445555666655 49999999999999999999998 456666 8889
Q ss_pred cccccccCcCcCCEEEEeCCC---------CChhhhhHhhhchhccCCc-CcEEEEEE
Q 000642 1132 RAGGLGINLTAADTVIFYESD---------WNPTLDLQAMDRAHRLGQT-KDVTVYRL 1179 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsd---------WNPt~d~QAmdRaHRiGQt-k~VtVYRL 1179 (1377)
+|.|.|||| .-++||||+.- -.-....|--|||+|.|.. .+-.|.-|
T Consensus 417 DAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl 473 (700)
T KOG0953|consen 417 DAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL 473 (700)
T ss_pred ccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe
Confidence 999999999 46899999874 2234557999999999876 33444433
No 142
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.48 E-value=0.00091 Score=74.18 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=82.7
Q ss_pred CcchhHHHHHHHHHHHHhcCCC-EEEEeCCCCcHHHHHHHHHHHHHH-----hcccCCcEEEEeCccc-HHHHHHHHHH-
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAE-----EKNIWGPFLVVAPASV-LNNWADEISR- 507 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~n-GILADEMGLGKTIQsIAlLa~L~e-----~~~i~gp~LIV~P~Sl-l~nW~~Ei~k- 507 (1377)
+|-+.|.+++.-+++ ..+ .++.-.+|.|||-...++++++.. .....+++||++|... +.+=...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 377899999975553 223 788899999999888888888732 2344579999999544 6666666655
Q ss_pred -----HCCCCeeEeecCCh-hhhHHHh---------hcc-------------------------------Ccc-------
Q 000642 508 -----FCPDLKTLPYWGGL-QERMVLR---------KNI-------------------------------NPK------- 534 (1377)
Q Consensus 508 -----f~p~l~vl~y~Gs~-~~rk~lr---------k~~-------------------------------~~k------- 534 (1377)
..+...++.+.... .....+. ... ...
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 12233343322221 0000000 000 000
Q ss_pred -----cc-cccCCCeeEEEEechhhhhhhhhhhcc--ceeEEEEcccccccCchhHHHHHHHhc-cCCceEEeecCCCCC
Q 000642 535 -----RL-YRRDAGFHILITSYQLLVADEKYFRRV--KWQYMVLDEAQAIKSSNSIRWKTLLSF-NCRNRLLLTGTPIQN 605 (1377)
Q Consensus 535 -----~l-~~~~~~f~VvItSYe~l~~d~~~l~~~--~w~~VIlDEAH~iKN~~S~r~kal~~l-~~~~rLlLTGTPIQN 605 (1377)
.+ ..-...++||++|..... ...+... .|++||||||-.+.- ..++..+ ....+++|-|=|-|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~--~~~~~~~~~~~d~vIvDEAsq~~e-----~~~l~~l~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAA--SPFLSNFKEKFDVVIVDEASQITE-----PEALIPLSRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-H-----HHHHHHHTTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccch--hhHhhhhcccCCEEEEeCCCCcch-----HHHHHHHHHhCCEEEEECChhhc
Confidence 00 011125679999988772 2344455 899999999976642 2333333 333899999988873
No 143
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.43 E-value=0.00037 Score=80.98 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=83.2
Q ss_pred CCeEEEEeccchHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEE
Q 000642 1072 NHRVLLFAQMTKMLNILEDYMNYR---KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1072 ghKVLIFSQ~t~mLDiLee~L~~~---g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIf 1148 (1377)
-.|+|||+.-..--|-|+.||+.+ .|.++-|+|..++.+|+.-++.|.. .+++ ||++|+.+..||++|+--.||+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvk-flictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVK-FLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeE-EEEEehhhhccccccCCceEEE
Confidence 369999999888899999999887 4688999999999999999999987 4554 6999999999999999999999
Q ss_pred eCCCCChhhhhHhhhchhc
Q 000642 1149 YESDWNPTLDLQAMDRAHR 1167 (1377)
Q Consensus 1149 yDsdWNPt~d~QAmdRaHR 1167 (1377)
+-.+=.-+....+|||++|
T Consensus 583 vtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EecCcccchhhhhhhccch
Confidence 9998888888888776665
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.40 E-value=0.077 Score=69.64 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=97.9
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+-+.++.+.|.-|||=|.....-.+|...|..+|+++-.|.-... +.=.++|+.=-..+.+ -++|-
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG~~GaV---TIATN 684 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAGQPGTV---TIATN 684 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcCCCCcE---EEecc
Confidence 4567999999999999999999999999999999999999999999988876532 3334566654443443 77999
Q ss_pred ccccccCcC--------cCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEE
Q 000642 1133 AGGLGINLT--------AADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1133 AGGlGINLT--------aAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtV 1176 (1377)
-+|.|-++. +.=+||--+.+=+.-+|.|..||++|.|..-....
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 999997765 34689999999999999999999999998754433
No 145
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.39 E-value=0.00021 Score=85.55 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=91.8
Q ss_pred CeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCC
Q 000642 1073 HRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESD 1152 (1377)
Q Consensus 1073 hKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsd 1152 (1377)
.|.|||++..+.+..|.-+|...++.-+.|+.++.+.+|-.-+++|...++. +|+.|++++.||+++..+|||+|..|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeecC
Confidence 3899999999999999999999999999999999999999999999986664 69999999999999999999999999
Q ss_pred CChhhhhHhhhchhccCCcCcEEE
Q 000642 1153 WNPTLDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1153 WNPt~d~QAmdRaHRiGQtk~VtV 1176 (1377)
-.-.++..|-||.-|-+. .-|+|
T Consensus 542 rtseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred CccceeEecccccccccC-CCeEE
Confidence 999999888888888764 33444
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.052 Score=70.02 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=104.0
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCe
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLK 513 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~ 513 (1377)
-.|-+-|..++.-+......-...+|.-.+|.|||=.=+.+++...... +-+||++| -++..|-.+.|...++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 3688899999988876541122458899999999988888887776543 57899999 7888997777765554 77
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccc--cCchhHHHHH----H
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAI--KSSNSIRWKT----L 587 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i--KN~~S~r~ka----l 587 (1377)
+.++|..-..... ...|.+- ......|||=|-..+..--+ +-.+|||||=|-- |..++.++.+ +
T Consensus 273 v~vlHS~Ls~~er-~~~W~~~----~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 273 VAVLHSGLSPGER-YRVWRRA----RRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hhhhcccCChHHH-HHHHHHH----hcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 7777775444332 2233322 23567789888777644332 4589999999974 5555444322 1
Q ss_pred -Hh-ccCCceEEeecCCC
Q 000642 588 -LS-FNCRNRLLLTGTPI 603 (1377)
Q Consensus 588 -~~-l~~~~rLlLTGTPI 603 (1377)
+. ...--.+|-|+||-
T Consensus 343 ~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 343 LRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHhCCCEEEecCCCC
Confidence 22 23344688899993
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.19 E-value=0.0019 Score=82.00 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHC-----CCCee
Q 000642 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFC-----PDLKT 514 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~-----p~l~v 514 (1377)
|.+-+.++...+.++...|+--.+|.|||+-.+.-+...+...+ .+++||++| ..|..|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-DQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-CceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 78888889888888877888889999999887655433332211 268999999 456778888876554 24555
Q ss_pred EeecC
Q 000642 515 LPYWG 519 (1377)
Q Consensus 515 l~y~G 519 (1377)
....|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 148
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0028 Score=83.08 Aligned_cols=156 Identities=19% Similarity=0.300 Sum_probs=102.6
Q ss_pred hccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCC
Q 000642 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPD 511 (1377)
Q Consensus 433 l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~ 511 (1377)
+...|-++|.+++.-| +.|-+.+++--+|.|||+.+.-.++.-.. .+ ..+.-..| +.|-.|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~-~~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALR-DG--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHH-cC--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 5578999999998654 46889999999999999999887765443 33 34788899 67777777777543322
Q ss_pred C--eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh----hhhhhccceeEEEEcccccccCch-hHHH
Q 000642 512 L--KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRVKWQYMVLDEAQAIKSSN-SIRW 584 (1377)
Q Consensus 512 l--~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d----~~~l~~~~w~~VIlDEAH~iKN~~-S~r~ 584 (1377)
+ -+-+++|.. .+ +.+..|+|+|-+.+++- ...+. .-..||+||.|.|.... ...|
T Consensus 189 v~~~vGL~TGDv--------~I--------N~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 189 VADMVGLMTGDV--------SI--------NPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred hhhhccceecce--------ee--------CCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeeccccccchhH
Confidence 2 112233321 11 23344555555766542 12222 44679999999997643 4566
Q ss_pred HHHHhc-cC-CceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHh
Q 000642 585 KTLLSF-NC-RNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFS 633 (1377)
Q Consensus 585 kal~~l-~~-~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFs 633 (1377)
.-+.-+ .+ -+.++||||= ++..+|.+|++
T Consensus 251 EE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~ 281 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQ 281 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHH
Confidence 665544 33 3789999993 45677888887
No 149
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.003 Score=81.05 Aligned_cols=127 Identities=23% Similarity=0.378 Sum_probs=92.8
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHHHHHCCC---
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPD--- 511 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei~kf~p~--- 511 (1377)
.++..|.- |.-.+.. |...-+-..+|+|||---+..-.+++..+ ++++||+|..+ +.|=.+-|.+|.+.
T Consensus 82 ~~ws~QR~---WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 82 RPWSAQRV---WAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred CchHHHHH---HHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 46777764 5555543 44443444899999998888888888654 68999999655 66888888888742
Q ss_pred CeeEe-ecCCh--hhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccc
Q 000642 512 LKTLP-YWGGL--QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAI 576 (1377)
Q Consensus 512 l~vl~-y~Gs~--~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i 576 (1377)
+.+.+ ||+.. ++++.....+ ..++|||+|||-+.+......|.+.+|++|++|-+..+
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i-------~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERI-------ESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHH-------hcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 23322 88863 3333332222 24689999999999999999999999999999999986
No 150
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.04 E-value=0.0012 Score=77.17 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=109.7
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
+....|..+|..+|..... ..+.+||..-.....++...|...|+...-+.|++..+.|..-+.+|... .. -+|++|
T Consensus 242 ~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~-~~lvvT 318 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KT-SILVVT 318 (529)
T ss_pred eccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-cc-ceEEEe
Confidence 3446788888888877654 45899999999999999999999999999999999999999999999873 22 349999
Q ss_pred cccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCC
Q 000642 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkg 1183 (1377)
+.|..|++..--|+||+||.+-.|..-..+.||+.|-|.| -.-|-||+..
T Consensus 319 dvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 319 DVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 9999999999999999999999999999999999999965 4567777764
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.96 E-value=0.037 Score=71.01 Aligned_cols=112 Identities=19% Similarity=0.340 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGl 1136 (1377)
.......|+..| ..|.+|-|||.-..+.++++++....+.+++.++|..+..+ |+.| .+..|++- |-+-+.
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviY-T~~itv 338 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIY-TPVITV 338 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEE-eceEEE
Confidence 334556666666 45899999998889999999999999999999999887663 3444 45777555 456677
Q ss_pred ccCcCc--CCEEEEe--CCCCChhh--hhHhhhchhccCCcCcEEEEE
Q 000642 1137 GINLTA--ADTVIFY--ESDWNPTL--DLQAMDRAHRLGQTKDVTVYR 1178 (1377)
Q Consensus 1137 GINLTa--AdtVIfy--DsdWNPt~--d~QAmdRaHRiGQtk~VtVYR 1178 (1377)
|+++-. -|.|+.| ...--|.+ -.|.+||+-.++. +.+.||-
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 888754 5777777 33334554 4899999999885 4566653
No 152
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=96.93 E-value=0.0035 Score=73.83 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc---
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR--- 1132 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr--- 1132 (1377)
-|+..|..||+-- --..|.|||-+-.++---|.=+|..-|++-|.|.|..+..-|.-+|+.||. ..+-+++.|+
T Consensus 253 DKflllyallKL~-LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk--G~YdivIAtD~s~ 329 (569)
T KOG0346|consen 253 DKFLLLYALLKLR-LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK--GLYDIVIATDDSA 329 (569)
T ss_pred hhHHHHHHHHHHH-HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC--cceeEEEEccCcc
Confidence 4777777777632 223499999999999889999999999999999999999999999999997 3344466666
Q ss_pred -----------------------cc---------ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEE
Q 000642 1133 -----------------------AG---------GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLI 1180 (1377)
Q Consensus 1133 -----------------------AG---------GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLI 1180 (1377)
++ +.||++...++||+||.|-+++....++||..|-|.+ -++.-||
T Consensus 330 ~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~--GtalSfv 407 (569)
T KOG0346|consen 330 DGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNK--GTALSFV 407 (569)
T ss_pred chhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCC--CceEEEe
Confidence 11 3699999999999999999999999999999998765 4555666
Q ss_pred eCC
Q 000642 1181 CKE 1183 (1377)
Q Consensus 1181 tkg 1183 (1377)
...
T Consensus 408 ~P~ 410 (569)
T KOG0346|consen 408 SPK 410 (569)
T ss_pred cch
Confidence 653
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.85 E-value=0.0043 Score=81.13 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=54.8
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHH
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISR 507 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~k 507 (1377)
..||.|.+-+.-+....+.|.+++|--.+|.|||+.+++.........+...+++..+. .+-+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 46999999999999999999999999999999999887755443333332234444444 4558899999987
No 154
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=96.85 E-value=0.004 Score=79.13 Aligned_cols=154 Identities=23% Similarity=0.373 Sum_probs=104.6
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH-HHHHHHHHHCCCC
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCPDL 512 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~-nW~~Ei~kf~p~l 512 (1377)
...|-.+|..++--| +.|-...+|.-+-.||||.|=..|+ |+..|. .+++--.|--.+. |=-++|+.-+.+.
T Consensus 295 pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAia-laq~h~--TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIA-LAQKHM--TRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHH-HHHhhc--cceEecchhhhhccchHHHHHHhcccc
Confidence 347889999998544 4688999999999999999865554 333443 3677788955554 5566776655554
Q ss_pred eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhh----hhhhhhccceeEEEEcccccccCc-hhHHHHHH
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----DEKYFRRVKWQYMVLDEAQAIKSS-NSIRWKTL 587 (1377)
Q Consensus 513 ~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~----d~~~l~~~~w~~VIlDEAH~iKN~-~S~r~kal 587 (1377)
. ..+|... ++ ....++|+|-+.+++ ....++.+ ..||+||+|+|-+. ....|.-+
T Consensus 368 g--LlTGDvq--------in--------PeAsCLIMTTEILRsMLYrgadliRDv--E~VIFDEVHYiND~eRGvVWEEV 427 (1248)
T KOG0947|consen 368 G--LLTGDVQ--------IN--------PEASCLIMTTEILRSMLYRGADLIRDV--EFVIFDEVHYINDVERGVVWEEV 427 (1248)
T ss_pred c--eeeccee--------eC--------CCcceEeehHHHHHHHHhcccchhhcc--ceEEEeeeeecccccccccceee
Confidence 4 4456322 11 234689999888765 34445554 55999999999763 34567766
Q ss_pred HhccCC--ceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Q 000642 588 LSFNCR--NRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK 634 (1377)
Q Consensus 588 ~~l~~~--~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk 634 (1377)
.-+-.+ +.++||||= .+-.+|..|...
T Consensus 428 iIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGR 456 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATV--------------------PNTLEFADWIGR 456 (1248)
T ss_pred eeeccccceEEEEeccC--------------------CChHHHHHHhhh
Confidence 555444 459999993 355689999864
No 155
>PRK10536 hypothetical protein; Provisional
Probab=96.74 E-value=0.0048 Score=69.91 Aligned_cols=150 Identities=23% Similarity=0.203 Sum_probs=84.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCC---e
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDL---K 513 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l---~ 513 (1377)
+-..|...+.||.. +...++--+.|.|||..++++..+...... ...++|+=|.-.. .|.-.|.|+- +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 56688888887754 447888899999999999999886443333 3444554443322 3444455531 1
Q ss_pred eEeecCChhhhHHHhhccCccccc-c-cCCCeeEEEEechhhhhhhhhhhcc--ceeEEEEcccccccCchhHHHHHHHh
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLY-R-RDAGFHILITSYQLLVADEKYFRRV--KWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~-~-~~~~f~VvItSYe~l~~d~~~l~~~--~w~~VIlDEAH~iKN~~S~r~kal~~ 589 (1377)
+.+|...- -..+........+. . ....-.|.|.+.. |++.. .-++|||||||++.- ......+..
T Consensus 131 ~~p~~~pi--~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~-------ymRGrtl~~~~vIvDEaqn~~~--~~~k~~ltR 199 (262)
T PRK10536 131 FAPYFRPV--YDVLVRRLGASFMQYCLRPEIGKVEIAPFA-------YMRGRTFENAVVILDEAQNVTA--AQMKMFLTR 199 (262)
T ss_pred HHHHHHHH--HHHHHHHhChHHHHHHHHhccCcEEEecHH-------HhcCCcccCCEEEEechhcCCH--HHHHHHHhh
Confidence 11111100 00011100000000 0 0011224444333 34333 347999999999954 555666777
Q ss_pred ccCCceEEeecCCCCCC
Q 000642 590 FNCRNRLLLTGTPIQNN 606 (1377)
Q Consensus 590 l~~~~rLlLTGTPIQNs 606 (1377)
+....+++++|-|-|..
T Consensus 200 ~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 200 LGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCCCEEEEeCChhhcc
Confidence 88899999999998865
No 156
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.65 E-value=0.58 Score=61.18 Aligned_cols=84 Identities=10% Similarity=0.181 Sum_probs=66.9
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCC-HHHHHHHHHHhccCCCceEEEEec
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSST-IMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk-~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
+...|..++.+-+.++.+.|.-|||-|.....-+.|..+|..+|+++-.|..... .+.=.++|+.=-..+. +-++|
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~---VTIAT 481 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGS---ITIAT 481 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCc---EEEec
Confidence 4456999888888888899999999999999999999999999999999998642 3444557766333233 47899
Q ss_pred cccccccC
Q 000642 1132 RAGGLGIN 1139 (1377)
Q Consensus 1132 rAGGlGIN 1139 (1377)
..+|.|.+
T Consensus 482 NMAGRGTD 489 (870)
T CHL00122 482 NMAGRGTD 489 (870)
T ss_pred cccCCCcC
Confidence 99998854
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.60 E-value=0.0084 Score=66.09 Aligned_cols=154 Identities=22% Similarity=0.249 Sum_probs=69.3
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCC---Ce
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPD---LK 513 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~---l~ 513 (1377)
+-++|...++-|.+ ...-++--..|.|||..|++..+++... +....++|+-|..-...+ + -|.|+ -+
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---L-GFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---c-ccCCCCHHHH
Confidence 34689988877762 3356788899999999999999888876 444677777775533222 2 22332 11
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccCC
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~ 593 (1377)
.-+|.+. -...+........+..-.....|-+.+...++- +.+.+.+|||||||++. ....-..+..+...
T Consensus 76 ~~p~~~p--~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t--~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 76 MEPYLRP--IYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLT--PEELKMILTRIGEG 146 (205)
T ss_dssp --TTTHH--HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHHHHHTTB-TT
T ss_pred HHHHHHH--HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCC--HHHHHHHHcccCCC
Confidence 1112111 011111111111110000111233333332211 12456899999999984 33444556667788
Q ss_pred ceEEeecCCCCCCHH
Q 000642 594 NRLLLTGTPIQNNMA 608 (1377)
Q Consensus 594 ~rLlLTGTPIQNsm~ 608 (1377)
.+++++|=|-|....
T Consensus 147 skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 147 SKIIITGDPSQIDLP 161 (205)
T ss_dssp -EEEEEE--------
T ss_pred cEEEEecCceeecCC
Confidence 999999999986543
No 158
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.57 E-value=0.031 Score=67.76 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=111.3
Q ss_pred CCCcccccc-ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCC
Q 000642 1045 SFDPAKLLT-DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSD 1123 (1377)
Q Consensus 1045 ~~d~~~li~-~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~d 1123 (1377)
-.||.--+. ..|-+.-|..-++...+.|.||||=+--.+|..-|.+||...|+++..+|...+--+|..++.+... +.
T Consensus 418 LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~ 496 (663)
T COG0556 418 LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GE 496 (663)
T ss_pred CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CC
Confidence 344443333 2445555555555555679999999999999999999999999999999999999999999999987 55
Q ss_pred ceEEEEeccccccccCcCcCCEEEEeCCCC-----ChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHH
Q 000642 1124 IFVFLLSTRAGGLGINLTAADTVIFYESDW-----NPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1124 i~VfLLSTrAGGlGINLTaAdtVIfyDsdW-----NPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
+-| |+-.--.-+||+|..+.-|-++|-|- +-+...|-||||-|--.- .|..|-=-..+++++-|-+..+
T Consensus 497 ~Dv-LVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 497 FDV-LVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETER 570 (663)
T ss_pred ccE-EEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHH
Confidence 556 77788889999999999999999973 567889999999995433 3444544444555555544433
No 159
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.26 E-value=0.029 Score=72.40 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=98.4
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
+...|..++.+-+.++.+.|.-|||.|.....-..|..+|...|+++-.|..... +.=..+|+ +. +..--+.++|-
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~A-G~~GaVTIATN 482 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KA-GQKGAITIATN 482 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hC-CCCCeEEEecc
Confidence 5678999999999998889999999999999999999999999999999987532 33334554 22 32333488999
Q ss_pred ccccccCcCcCC--------EEEEeCCCCChhhhhHhhhchhccCCcCcEEEE
Q 000642 1133 AGGLGINLTAAD--------TVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1177 (1377)
Q Consensus 1133 AGGlGINLTaAd--------tVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVY 1177 (1377)
.+|.|.++.-.. +||..+.+=|--+|.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999998876433 999999999999999999999999987554443
No 160
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.23 E-value=0.0078 Score=60.87 Aligned_cols=115 Identities=24% Similarity=0.211 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcc---cCCcEEEEeCccc-HHHHHHHHHHHC-CCCeeEeecCChhhhHHHhh
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKN---IWGPFLVVAPASV-LNNWADEISRFC-PDLKTLPYWGGLQERMVLRK 529 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~---i~gp~LIV~P~Sl-l~nW~~Ei~kf~-p~l~vl~y~Gs~~~rk~lrk 529 (1377)
+..+++.-+.|.|||..+-.++..+..... ...-+.|-||... ...+..++.... ..... .+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~---------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQ---------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cC----------
Confidence 345788899999999999998887765311 1123455566555 556666664322 11000 00
Q ss_pred ccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc--cCCceEEeecCC
Q 000642 530 NINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--NCRNRLLLTGTP 602 (1377)
Q Consensus 530 ~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l--~~~~rLlLTGTP 602 (1377)
+..+....-...+....-.+|||||+|++. +......+..+ ...-.++|+|||
T Consensus 71 ------------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 ------------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 000111111233444444799999999994 24445555544 667789999999
No 161
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.21 E-value=0.02 Score=71.40 Aligned_cols=142 Identities=20% Similarity=0.371 Sum_probs=92.9
Q ss_pred hhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHH-HHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHC
Q 000642 432 LFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM-AFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFC 509 (1377)
Q Consensus 432 ~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsI-AlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~ 509 (1377)
..-.+|-|+|..++. +.+.+-..++..-+..||||.|= |+...|.+. .+++--.| ++|-.|=.+|+..=+
T Consensus 125 ~YPF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k----QRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK----QRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred CCCcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc----CeEEeeChhhhhcchhHHHHHHHh
Confidence 345689999999885 55678888999999999999984 445556654 46678888 556666777875433
Q ss_pred CCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhh----hhhhhhccceeEEEEcccccccCch-hHHH
Q 000642 510 PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVA----DEKYFRRVKWQYMVLDEAQAIKSSN-SIRW 584 (1377)
Q Consensus 510 p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~----d~~~l~~~~w~~VIlDEAH~iKN~~-S~r~ 584 (1377)
.+ |-..+|.. .++ .....+|+|-+.+++ ....++.+.| ||+||.|+++... ...|
T Consensus 197 ~D--VGLMTGDV--------TIn--------P~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVW 256 (1041)
T KOG0948|consen 197 KD--VGLMTGDV--------TIN--------PDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVW 256 (1041)
T ss_pred cc--cceeecce--------eeC--------CCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceee
Confidence 33 33334421 122 233477888777755 3445565555 9999999998743 3334
Q ss_pred HHHHhc--cCCceEEeecC
Q 000642 585 KTLLSF--NCRNRLLLTGT 601 (1377)
Q Consensus 585 kal~~l--~~~~rLlLTGT 601 (1377)
.--.-+ ..-+-++||||
T Consensus 257 EETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 257 EETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred eeeEEeccccceEEEEecc
Confidence 432222 44566899999
No 162
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.88 E-value=0.054 Score=65.24 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=43.3
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
..+|-|.+-+.=+-.-.+.+..|+|-...|.||||.-+|++....-.+...-.-||-|.
T Consensus 16 ~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred ccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 57888987776666677888899999999999999999987655444432223355554
No 163
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=95.80 E-value=0.019 Score=67.40 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=93.1
Q ss_pred EEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCCC
Q 000642 1075 VLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWN 1154 (1377)
Q Consensus 1075 VLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdWN 1154 (1377)
-|||+.-..-..-|.-.|..+|+..+-++.+.+..+|..+.++|.+ .++.| ++.|-+-|.|++=....-||+.|++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCE-EEEEeccccccCCcceeEEEecCchhh
Confidence 4899998888899999999999999999999999999999999998 56667 888999999999999999999999999
Q ss_pred hhhhhHhhhchhccCCcCcEEEEE
Q 000642 1155 PTLDLQAMDRAHRLGQTKDVTVYR 1178 (1377)
Q Consensus 1155 Pt~d~QAmdRaHRiGQtk~VtVYR 1178 (1377)
-+-.-|--|||+|-|-..=+..|.
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999877777664
No 164
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.77 E-value=0.054 Score=66.91 Aligned_cols=74 Identities=26% Similarity=0.474 Sum_probs=60.5
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHHHHHCCCCee
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLKT 514 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei~kf~p~l~v 514 (1377)
+|-.-|..+|.-.+. ..=.||--.+|.|||+++-+++.||++.+. +|+||++|..+ +.|-..-|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQHA--GPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHhcC--CceEEEcccchhHHHHHHHHHhc--CceE
Confidence 578899999987764 334578889999999999999999998854 79999999887 77888888774 4776
Q ss_pred Eee
Q 000642 515 LPY 517 (1377)
Q Consensus 515 l~y 517 (1377)
+..
T Consensus 482 vRl 484 (935)
T KOG1802|consen 482 VRL 484 (935)
T ss_pred eee
Confidence 654
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.74 E-value=0.073 Score=68.71 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=53.3
Q ss_pred hccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHHHH
Q 000642 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISR 507 (1377)
Q Consensus 433 l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei~k 507 (1377)
+...|-+.|..+|.+.+. .....|+--.+|.|||.+.++++.++...+ .++||++|... +.+....+..
T Consensus 154 ~~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 154 FDPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred cCCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 345789999999987653 223567888999999999999998877542 38999999766 6677777765
No 166
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.72 E-value=0.0084 Score=80.20 Aligned_cols=181 Identities=27% Similarity=0.350 Sum_probs=105.6
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCc--HHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCC-
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLG--KTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCP- 510 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLG--KTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p- 510 (1377)
...+.+||.....-..... .....++++.|+| ||+++..+......... ....++++|..+..+|..|...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRGE-IKRVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhhh-hccceeccchHHHHHHHHHhhhhccc
Confidence 3456667776653222222 2227889999999 99998887766654433 3688999999999999999876521
Q ss_pred CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh----hhhhhccce---eEEEEcccccccCch---
Q 000642 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRVKW---QYMVLDEAQAIKSSN--- 580 (1377)
Q Consensus 511 ~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d----~~~l~~~~w---~~VIlDEAH~iKN~~--- 580 (1377)
...++...+ ++..+.....+........++.+++..... ...+....| +++++||+|.+.+..
T Consensus 159 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (866)
T COG0553 159 RLAVLDKEG-------LRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTR 231 (866)
T ss_pred cchhhhhhh-------hhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccc
Confidence 112221111 111111000000001111144444444433 223344457 899999999997742
Q ss_pred ------hHHHHHHHhcc--C------CceEEeecCCCCCCHHHHHHHHHhhcCCCCCC
Q 000642 581 ------SIRWKTLLSFN--C------RNRLLLTGTPIQNNMAELWALLHFIMPTLFDS 624 (1377)
Q Consensus 581 ------S~r~kal~~l~--~------~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds 624 (1377)
+.....+.... . -...++++||.+....++.+...++.+..+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 232 KLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 33344443331 1 13358999999999999888778887766655
No 167
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.64 E-value=0.055 Score=72.94 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=64.9
Q ss_pred HHHHHHHHHHh-hCCCeEEEEeccchHHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q 000642 1059 QTLDILLKRLR-AENHRVLLFAQMTKMLNILEDYMNYRKY--RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGG 1135 (1377)
Q Consensus 1059 ~~L~~LL~~Lk-~~ghKVLIFSQ~t~mLDiLee~L~~~g~--~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGG 1135 (1377)
..+...|.++. ..+.++|||+..-++|..+.++|..... .+..+.-+.+...|..++++|+..++ -| |+.|.+-.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~-~i-LlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK-AI-LLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC-eE-EEecCccc
Confidence 45555555544 3456899988888999988888864322 13333322222358999999987433 24 77788899
Q ss_pred cccCcCc--CCEEEEeCCCC-Chh
Q 000642 1136 LGINLTA--ADTVIFYESDW-NPT 1156 (1377)
Q Consensus 1136 lGINLTa--AdtVIfyDsdW-NPt 1156 (1377)
+||++.+ ...||+.=.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999987 47888888777 553
No 168
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.63 E-value=3.6 Score=55.07 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHHH----hcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCC--------------------------
Q 000642 438 KEYQLKGLQWLVNCY----EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWG-------------------------- 487 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly----~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~g-------------------------- 487 (1377)
+-+|=++++-+..+- ++|.-|+---.+|-|||+.-.=+|..|+.....++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 569999998777644 46777888889999999999888888876543211
Q ss_pred -cEEEEeCccc---HH-HHHHHHH-----------HHCCCCe---eEeecCChhhhHHHhhccCcccccccCCCeeEEEE
Q 000642 488 -PFLVVAPASV---LN-NWADEIS-----------RFCPDLK---TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILIT 548 (1377)
Q Consensus 488 -p~LIV~P~Sl---l~-nW~~Ei~-----------kf~p~l~---vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvIt 548 (1377)
-.-|++=.+. |+ .+++... .|++.-. ++.|-|+..+-... .......-..+.-...|+|+
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~-~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELL-GRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhh-hhhccChhhhhhhcCCeEEe
Confidence 1223333322 22 2333221 1222222 45566653322211 11110100111122357777
Q ss_pred echhhhhhhhh---------hhccceeEEEEcccccccCchhHHHHHHHh---ccCCceEEeecCCCCCCHHHH
Q 000642 549 SYQLLVADEKY---------FRRVKWQYMVLDEAQAIKSSNSIRWKTLLS---FNCRNRLLLTGTPIQNNMAEL 610 (1377)
Q Consensus 549 SYe~l~~d~~~---------l~~~~w~~VIlDEAH~iKN~~S~r~kal~~---l~~~~rLlLTGTPIQNsm~EL 610 (1377)
|.+.+..-... +..+--..|||||+|.+-.........+.. .-..+.++||||--..-...|
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 77666543311 123345679999999996655544444433 356788999999765444443
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.47 E-value=0.047 Score=70.44 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=87.2
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCe
Q 000642 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGF 543 (1377)
Q Consensus 465 GLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f 543 (1377)
|.|||-.-+.+++...... +.+||++| -++..|+..-|...+++..+.+||.........+.+..- ..+..
T Consensus 170 GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~-----~~G~~ 241 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV-----LRGQA 241 (665)
T ss_pred CCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----hCCCC
Confidence 8999999999998877642 46899999 678899999999988867888899876655544433221 23556
Q ss_pred eEEEEechhhhhhhhhhhccceeEEEEcccccc--cCchhHHH----HH-HHh-ccCCceEEeecCC
Q 000642 544 HILITSYQLLVADEKYFRRVKWQYMVLDEAQAI--KSSNSIRW----KT-LLS-FNCRNRLLLTGTP 602 (1377)
Q Consensus 544 ~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i--KN~~S~r~----ka-l~~-l~~~~rLlLTGTP 602 (1377)
.|||-|...+..-. -+..+|||||=|.- |...+.++ -+ ++. ...-..++-|+||
T Consensus 242 ~IViGtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 242 RVVVGTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred cEEEEcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 79999988774432 25689999999873 54433321 12 122 2344457779999
No 170
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.27 E-value=0.08 Score=70.26 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccC
Q 000642 1060 TLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGIN 1139 (1377)
Q Consensus 1060 ~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGIN 1139 (1377)
.+...+..+...+.++||++..-++|..+.+.|....+.. ..-|... .|..++++|+..+. -| |+.|.+-.+||+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~-~v-LlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ-QI-LLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC-eE-EEecchhhCCCC
Confidence 4444444455557799999999999999888887665444 4445332 36679999987333 34 788899999999
Q ss_pred cC--cCCEEEEeCCC
Q 000642 1140 LT--AADTVIFYESD 1152 (1377)
Q Consensus 1140 LT--aAdtVIfyDsd 1152 (1377)
+. .+..||+.=.|
T Consensus 710 ~p~~~~~~viI~kLP 724 (820)
T PRK07246 710 FVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCeEEEEEecCC
Confidence 96 35667776544
No 171
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.20 E-value=0.055 Score=66.77 Aligned_cols=160 Identities=22% Similarity=0.360 Sum_probs=97.7
Q ss_pred hhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHHH----
Q 000642 432 LFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEIS---- 506 (1377)
Q Consensus 432 ~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei~---- 506 (1377)
.++..|-+-|..++.+..+. + -=-|+=-.+|.|||.+..-+|..+...+ ..+||.+|..+ +.|-.+-+.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~--k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~ 254 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN--K-DLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKL 254 (649)
T ss_pred cCCccccHHHHHHHHHHhcc--C-CceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhccccc
Confidence 35567889999999887752 1 2246666899999999999888877653 58899999776 777777432
Q ss_pred ---------HHCCC-----CeeEeecCC------------------------hhhh-------HHHhhccCc---ccccc
Q 000642 507 ---------RFCPD-----LKTLPYWGG------------------------LQER-------MVLRKNINP---KRLYR 538 (1377)
Q Consensus 507 ---------kf~p~-----l~vl~y~Gs------------------------~~~r-------k~lrk~~~~---k~l~~ 538 (1377)
+..+. +..+.-.+. ...+ +.+|+.... +....
T Consensus 255 ~l~R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~e 334 (649)
T KOG1803|consen 255 NLVRVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKE 334 (649)
T ss_pred chhhcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 111111110 0000 111111110 11112
Q ss_pred cCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCC
Q 000642 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1377)
Q Consensus 539 ~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQ 604 (1377)
......||++|-..... .++.+..|++||||||-..--+ ..|-.+..-+ +++|.|-|.|
T Consensus 335 ii~n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~--~cWipvlk~k---k~ILaGDp~Q 393 (649)
T KOG1803|consen 335 IISNSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEP--QCWIPVLKGK---KFILAGDPKQ 393 (649)
T ss_pred hhcccceEEEeccchhh--hhhcccCCCEEEEehhhhhccc--hhhhHHhcCC---ceEEeCCccc
Confidence 23455677777665544 6677788999999998665433 4466665544 9999999988
No 172
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.03 E-value=0.26 Score=54.19 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=66.5
Q ss_pred CcchhHHHHHHHHHHHHhcCC-CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH-HHHHHHHHHCCCCe
Q 000642 436 SLKEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCPDLK 513 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~-nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~-nW~~Ei~kf~p~l~ 513 (1377)
+|-+-|..++..++. .+. -.+|--..|.|||...-.+...+.. .+ ..+++++|.+-.. +-.+.+. ..
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-~g--~~v~~~apT~~Aa~~L~~~~~-----~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEA-AG--KRVIGLAPTNKAAKELREKTG-----IE 69 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHH-TT----EEEEESSHHHHHHHHHHHT-----S-
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHh-CC--CeEEEECCcHHHHHHHHHhhC-----cc
Confidence 477899999998865 232 3567788999999876665555544 33 5889999976533 2222210 11
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhcc-C
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFN-C 592 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~-~ 592 (1377)
... +..+.............. ....+++|||||..+-+. .....+.... .
T Consensus 70 a~T----------i~~~l~~~~~~~~~~~~~-----------------~~~~~vliVDEasmv~~~--~~~~ll~~~~~~ 120 (196)
T PF13604_consen 70 AQT----------IHSFLYRIPNGDDEGRPE-----------------LPKKDVLIVDEASMVDSR--QLARLLRLAKKS 120 (196)
T ss_dssp EEE----------HHHHTTEECCEECCSSCC------------------TSTSEEEESSGGG-BHH--HHHHHHHHS-T-
T ss_pred hhh----------HHHHHhcCCccccccccc-----------------CCcccEEEEecccccCHH--HHHHHHHHHHhc
Confidence 111 111111000000000000 234579999999998433 2333333343 3
Q ss_pred CceEEeecCCCC
Q 000642 593 RNRLLLTGTPIQ 604 (1377)
Q Consensus 593 ~~rLlLTGTPIQ 604 (1377)
..+++|.|-|-|
T Consensus 121 ~~klilvGD~~Q 132 (196)
T PF13604_consen 121 GAKLILVGDPNQ 132 (196)
T ss_dssp T-EEEEEE-TTS
T ss_pred CCEEEEECCcch
Confidence 679999999987
No 173
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.00 E-value=0.22 Score=57.26 Aligned_cols=151 Identities=20% Similarity=0.204 Sum_probs=84.0
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH----HHHHHHHHHCCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN----NWADEISRFCPD 511 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~----nW~~Ei~kf~p~ 511 (1377)
.+++-|+-|+--| .. |-|.=-.+|=|||+.+.... ++..-.+ .++=||+....|. +|...|-+++ +
T Consensus 77 ~p~~vQll~~l~L----~~--G~laEm~TGEGKTli~~l~a-~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 77 RPYDVQLLGALAL----HK--GRLAEMKTGEGKTLIAALPA-ALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp ---HHHHHHHHHH----HT--TSEEEESTTSHHHHHHHHHH-HHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cccHHHHhhhhhc----cc--ceeEEecCCCCcHHHHHHHH-HHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 4666777776333 12 44888899999999985444 4443333 3667777765554 4888888877 5
Q ss_pred CeeEeecCC-h-hhhHHHhhccCcccccccCCCeeEEEEechhhhhh---------hhhhhccceeEEEEcccccccC--
Q 000642 512 LKTLPYWGG-L-QERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---------EKYFRRVKWQYMVLDEAQAIKS-- 578 (1377)
Q Consensus 512 l~vl~y~Gs-~-~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d---------~~~l~~~~w~~VIlDEAH~iKN-- 578 (1377)
+.+-...+. . .+|+.. | ..+|+-+|-..+..| ........++++||||+..+-=
T Consensus 147 lsv~~~~~~~~~~~r~~~---------Y----~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDe 213 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREA---------Y----AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDE 213 (266)
T ss_dssp --EEEEETTTEHHHHHHH---------H----HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTG
T ss_pred hccccCccccCHHHHHHH---------H----hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEec
Confidence 555443332 2 222221 2 234666666555443 1111234789999999877621
Q ss_pred ----------------------chhHHHHHHHhccCCceEEeecCCCCCCHHHHH
Q 000642 579 ----------------------SNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELW 611 (1377)
Q Consensus 579 ----------------------~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELw 611 (1377)
..+..++.+... -++..+|||| ....-.|||
T Consensus 214 a~~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~~-Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 214 ARTPLIISGAKEGLKITPESLTLASISYQNFFRL-YPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp CCSEEEEEEHHTTS----SEEEEEEEEHHHHHTT-SSEEEEEESS-TGGGHHHHH
T ss_pred CcccccccccccCCccCCCCeEEEEeehHHHHHh-cchheeeCCC-ChhhHhhcC
Confidence 011122222222 2337899999 777788887
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=94.99 E-value=0.1 Score=66.63 Aligned_cols=167 Identities=17% Similarity=0.182 Sum_probs=105.8
Q ss_pred HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH----HH----HHHH-HHHCC--CCeeEeecC
Q 000642 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN----NW----ADEI-SRFCP--DLKTLPYWG 519 (1377)
Q Consensus 451 ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~----nW----~~Ei-~kf~p--~l~vl~y~G 519 (1377)
+++...|.=+-.|+|.|||.+-+-+|..|-..++. -.|+||||.--+. .- .++| ..++. .+..++|..
T Consensus 70 ~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 70 RIDDKLNIDILMETGTGKTYTYLRTMFELHKKYGL-FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred cCCCcceeeEEEecCCCceeeHHHHHHHHHHHhCc-eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 34455567678899999999999999999888876 6899999953322 11 2223 22232 244454431
Q ss_pred ChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh---h---------------------hhhhccceeEEEEccccc
Q 000642 520 GLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---E---------------------KYFRRVKWQYMVLDEAQA 575 (1377)
Q Consensus 520 s~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d---~---------------------~~l~~~~w~~VIlDEAH~ 575 (1377)
.. ...+ ........|+|.+.+.+..+ . +++..+ --.||+||-|+
T Consensus 149 ~~----~~~~-------~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~ 216 (985)
T COG3587 149 DI----EKFK-------FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHR 216 (985)
T ss_pred HH----HHHh-------hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhh
Confidence 11 1111 12234556777777776554 1 111111 24699999999
Q ss_pred ccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccc
Q 000642 576 IKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHA 640 (1377)
Q Consensus 576 iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk~ie~~~ 640 (1377)
+... .+.|.++..++.-..|=-.||=- .+...++ -.+|+.+.|+....+.|..+.
T Consensus 217 f~~~-~k~~~~i~~l~pl~ilRfgATfk----d~y~~l~-----yrLDsi~Af~~~LVK~I~v~~ 271 (985)
T COG3587 217 FLGD-DKTYGAIKQLNPLLILRFGATFK----DEYNNLV-----YRLDSIDAFNQKLVKQIRVFS 271 (985)
T ss_pred cccc-hHHHHHHHhhCceEEEEecccch----hhhcCee-----EEeeHHhhhhhhhhhheeeee
Confidence 9876 78899999998888777777731 1111111 234788889888888887654
No 175
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.091 Score=59.11 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcHHHH-HHHHHHHHHHhcccCCcEEEEeCcccHH-HHHHHHHHHCC--CCeeEe
Q 000642 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQ-AMAFLAHLAEEKNIWGPFLVVAPASVLN-NWADEISRFCP--DLKTLP 516 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nGILADEMGLGKTIQ-sIAlLa~L~e~~~i~gp~LIV~P~Sll~-nW~~Ei~kf~p--~l~vl~ 516 (1377)
|..++--++ .|.+.|.-..-|.|||.+ +|++|..+--... .--.||+.|.-=+. |-++-+..... +.++..
T Consensus 54 QqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ha 128 (400)
T KOG0328|consen 54 QQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-ETQALILSPTRELAVQIQKVILALGDYMNVQCHA 128 (400)
T ss_pred Hhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccccc-eeeEEEecChHHHHHHHHHHHHHhcccccceEEE
Confidence 444444343 488899999999999987 5777755432211 12579999965544 45555554443 455566
Q ss_pred ecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh--hhhhhccceeEEEEcccccccC--chhHHHHHHHhcc-
Q 000642 517 YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSFN- 591 (1377)
Q Consensus 517 y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKN--~~S~r~kal~~l~- 591 (1377)
..|+..-...+++. +-+.|||.-|...+..- ...|+-....++|||||..+-| ...+.+...+.+.
T Consensus 129 cigg~n~gedikkl---------d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~ 199 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKL---------DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP 199 (400)
T ss_pred EecCCccchhhhhh---------cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC
Confidence 66654432222222 24568998888877543 3345556788999999999865 4567777778775
Q ss_pred CCceEEeecCCCCCCHHHHHHHHHhhcCCCC
Q 000642 592 CRNRLLLTGTPIQNNMAELWALLHFIMPTLF 622 (1377)
Q Consensus 592 ~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lF 622 (1377)
....+++|||- ..|+.-+..+.|+++.
T Consensus 200 ~~Qvv~~SATl----p~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 200 GAQVVLVSATL----PHEILEMTEKFMTDPV 226 (400)
T ss_pred CceEEEEeccC----cHHHHHHHHHhcCCce
Confidence 67789999995 3577777788887754
No 176
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=94.88 E-value=0.091 Score=63.32 Aligned_cols=154 Identities=22% Similarity=0.257 Sum_probs=90.1
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHH----HHHHHHHHHhcccCCcEEEEeCcccHH-HH---HHHHHH
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA----MAFLAHLAEEKNIWGPFLVVAPASVLN-NW---ADEISR 507 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQs----IAlLa~L~e~~~i~gp~LIV~P~Sll~-nW---~~Ei~k 507 (1377)
++-+-|-+.+.=++ .|...+.+.-+|.|||+-= |-++..+.-.....--+|||||.--+. |- ..|+.+
T Consensus 104 ~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 35555555554333 3667888999999999753 222222221111112479999965443 43 345567
Q ss_pred HCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhh---hhhccceeEEEEcccccccCc--hhH
Q 000642 508 FCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK---YFRRVKWQYMVLDEAQAIKSS--NSI 582 (1377)
Q Consensus 508 f~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~---~l~~~~w~~VIlDEAH~iKN~--~S~ 582 (1377)
+.|...+.+..|+..-+....+.. .+.+++|.|...+....+ -|.-..-+++|+|||.+|-.. .--
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl~---------k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~d 250 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKLV---------KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEED 250 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHhh---------ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHH
Confidence 777777777667654333322211 256899999988754321 121123389999999999542 222
Q ss_pred HHHHHHhc-cCCceEEeecCC
Q 000642 583 RWKTLLSF-NCRNRLLLTGTP 602 (1377)
Q Consensus 583 r~kal~~l-~~~~rLlLTGTP 602 (1377)
.-+.+..+ ..+..+|.|||-
T Consensus 251 i~~Ii~~lpk~rqt~LFSAT~ 271 (543)
T KOG0342|consen 251 VEQIIKILPKQRQTLLFSATQ 271 (543)
T ss_pred HHHHHHhccccceeeEeeCCC
Confidence 23333334 556679999993
No 177
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=94.87 E-value=0.074 Score=64.64 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=81.9
Q ss_pred EEEeCCCCcHHHH-HHHHHHHHHHhc------------ccCCcEEEEeCc-ccHHHHHHHHHHHC--CCCeeEeecCChh
Q 000642 459 ILADEMGLGKTIQ-AMAFLAHLAEEK------------NIWGPFLVVAPA-SVLNNWADEISRFC--PDLKTLPYWGGLQ 522 (1377)
Q Consensus 459 ILADEMGLGKTIQ-sIAlLa~L~e~~------------~i~gp~LIV~P~-Sll~nW~~Ei~kf~--p~l~vl~y~Gs~~ 522 (1377)
+=|.|+|.|||+- .|-+++.+.+.. +...--|||+|. -|.+|-.+.|...+ +++.+....|+..
T Consensus 223 lGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLa 302 (731)
T KOG0347|consen 223 LGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLA 302 (731)
T ss_pred ccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhH
Confidence 4478999999986 355555333221 111126999994 56778888887665 5788888888765
Q ss_pred hhHHHhhccCcccccccCCCeeEEEEechhhhhh----hhhhhcc-ceeEEEEcccccccC--chhHHHHHHHhcc----
Q 000642 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD----EKYFRRV-KWQYMVLDEAQAIKS--SNSIRWKTLLSFN---- 591 (1377)
Q Consensus 523 ~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d----~~~l~~~-~w~~VIlDEAH~iKN--~~S~r~kal~~l~---- 591 (1377)
..+.-|-. + ...||||.|...+..- .-.+.++ +..++|||||.++-. .=--..+.|..++
T Consensus 303 vqKQqRlL-------~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~ 373 (731)
T KOG0347|consen 303 VQKQQRLL-------N--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK 373 (731)
T ss_pred HHHHHHHH-------h--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc
Confidence 54432221 1 1468999998776442 2223332 457899999999843 2222333333332
Q ss_pred --CCceEEeecC
Q 000642 592 --CRNRLLLTGT 601 (1377)
Q Consensus 592 --~~~rLlLTGT 601 (1377)
-+..++.|||
T Consensus 374 ~~qrQTlVFSAT 385 (731)
T KOG0347|consen 374 NRQRQTLVFSAT 385 (731)
T ss_pred ccccceEEEEEE
Confidence 2345777777
No 178
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.83 E-value=0.16 Score=58.96 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=83.2
Q ss_pred cCCCEEEEeCCCCcHHHH-HHHHHHHHHHhcccCCcEEEEeCcccH-HHHHHHHHHH--CCCCeeEeecCChhhhHHHhh
Q 000642 454 QGLNGILADEMGLGKTIQ-AMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRF--CPDLKTLPYWGGLQERMVLRK 529 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQ-sIAlLa~L~e~~~i~gp~LIV~P~Sll-~nW~~Ei~kf--~p~l~vl~y~Gs~~~rk~lrk 529 (1377)
.|..||=+.-+|.|||.. ++-.|..|.+. ...--.||++|..=+ .|-.+.|.-. .-++++.++.|...-- ..
T Consensus 43 eGrdcig~AkTGsGKT~AFaLPil~rLsed-P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i---~q 118 (442)
T KOG0340|consen 43 EGRDCIGCAKTGSGKTAAFALPILNRLSED-PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMI---MQ 118 (442)
T ss_pred cccccccccccCCCcchhhhHHHHHhhccC-CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHh---hh
Confidence 378889899999999974 23334444432 221245899996544 4555555432 2367777777753321 11
Q ss_pred ccCcccccccCCCeeEEEEechhhhhhh------hhhhccceeEEEEcccccccCchhHHHHHHHh----c-cCCceEEe
Q 000642 530 NINPKRLYRRDAGFHILITSYQLLVADE------KYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS----F-NCRNRLLL 598 (1377)
Q Consensus 530 ~~~~k~l~~~~~~f~VvItSYe~l~~d~------~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~----l-~~~~rLlL 598 (1377)
.. .+ ....||||++.+.+.-.. ..+--.+..++|+|||.++-+.. ....|.. + ..+-.+++
T Consensus 119 a~---~L---~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~d~L~~i~e~lP~~RQtLlf 190 (442)
T KOG0340|consen 119 AA---IL---SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FPDILEGIEECLPKPRQTLLF 190 (442)
T ss_pred hh---hc---ccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hhhHHhhhhccCCCccceEEE
Confidence 11 11 245699999998874321 11222355789999999997642 2222222 2 34578999
Q ss_pred ecCCCCCCHHH
Q 000642 599 TGTPIQNNMAE 609 (1377)
Q Consensus 599 TGTPIQNsm~E 609 (1377)
|+| |.+++.+
T Consensus 191 SAT-itd~i~q 200 (442)
T KOG0340|consen 191 SAT-ITDTIKQ 200 (442)
T ss_pred Eee-hhhHHHH
Confidence 999 3334333
No 179
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.79 E-value=0.079 Score=63.66 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=32.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
|+--..|.|||+.++.++..+... ......+++|+...+.+...+
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHH
Confidence 455579999999999999998211 112467888887777665554
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.39 E-value=0.14 Score=54.71 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=55.2
Q ss_pred hhCCCeEEEEeccchHHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc--ccccccCcCc
Q 000642 1069 RAENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR--AGGLGINLTA 1142 (1377)
Q Consensus 1069 k~~ghKVLIFSQ~t~mLDiLee~L~~~g----~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr--AGGlGINLTa 1142 (1377)
...+.++|||+..-.+++.+.+++.... +..+. .| ..++..+++.|..+... +|+++. .-.+|||+..
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCC
Confidence 3446899999999999999999997653 33332 23 24789999999995444 467776 7899999985
Q ss_pred --CCEEEEeCCCC
Q 000642 1143 --ADTVIFYESDW 1153 (1377)
Q Consensus 1143 --AdtVIfyDsdW 1153 (1377)
+..||+.-.|+
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 78899988886
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.78 E-value=0.65 Score=46.68 Aligned_cols=55 Identities=27% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHhc--CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHH
Q 000642 445 LQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1377)
Q Consensus 445 L~WL~~ly~~--g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~ 502 (1377)
++++...... +...++.-++|.|||..+-.++..+... ..+++.+........+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~ 63 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLV 63 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhH
Confidence 3444443333 5567889999999998777766666522 24555555544444443
No 182
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.53 E-value=0.3 Score=66.85 Aligned_cols=136 Identities=17% Similarity=0.140 Sum_probs=70.7
Q ss_pred HhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccH-HHHHHHHHHHC-CC-CeeEeecCChhhhHHHh
Q 000642 452 YEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-NNWADEISRFC-PD-LKTLPYWGGLQERMVLR 528 (1377)
Q Consensus 452 y~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll-~nW~~Ei~kf~-p~-l~vl~y~Gs~~~rk~lr 528 (1377)
.+.+.-.||+-++|.|||-|.=-++.... .+..+.+++.-|--+. .....-+..-. -. ...+-|.-.
T Consensus 79 l~~~~vvii~g~TGSGKTTqlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR-------- 148 (1283)
T TIGR01967 79 IAENQVVIIAGETGSGKTTQLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVR-------- 148 (1283)
T ss_pred HHhCceEEEeCCCCCCcHHHHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEc--------
Confidence 34455779999999999998654443321 1222334444464432 22333332221 11 122222110
Q ss_pred hccCcccccccCCCeeEEEEechhhhhhhhh-hhccceeEEEEcccc-cccCchhHH--HHHHHhc-cCCceEEeecCCC
Q 000642 529 KNINPKRLYRRDAGFHILITSYQLLVADEKY-FRRVKWQYMVLDEAQ-AIKSSNSIR--WKTLLSF-NCRNRLLLTGTPI 603 (1377)
Q Consensus 529 k~~~~k~l~~~~~~f~VvItSYe~l~~d~~~-l~~~~w~~VIlDEAH-~iKN~~S~r--~kal~~l-~~~~rLlLTGTPI 603 (1377)
++.. ....-+|.++|...+...... -.--.+++||||||| +.-+..-.. .+.+... .....+++|||.-
T Consensus 149 --~~~~----~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 149 --FHDQ----VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred --CCcc----cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 0000 012356899999988764321 001367999999999 466544332 2222222 2345799999973
No 183
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.18 Score=61.57 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhcCCC-EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHHHHCCCCee
Q 000642 440 YQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEISRFCPDLKT 514 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~n-GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~kf~p~l~v 514 (1377)
-|-+++.-|+.-.++|.. -.|--.+|.|||.++--+|+.+. +|+||++| +.|..|-..||+.|+|+-.|
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~------rPtLV~AhNKTLAaQLy~Efk~fFP~NaV 86 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQ------RPTLVLAHNKTLAAQLYSEFKEFFPENAV 86 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhC------CCeEEEecchhHHHHHHHHHHHhCcCcce
Confidence 466777778877766653 36667899999999888886553 69999999 55567999999999998554
No 184
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=93.47 E-value=12 Score=49.49 Aligned_cols=85 Identities=12% Similarity=0.196 Sum_probs=69.0
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCC-CCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGS-STIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGs-tk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
+...|..++.+-+.++.+.|.-|||-|.....-..|...|...|+++-.|... ...+.-..+|+.=-..+.+ -++|
T Consensus 420 t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaV---TIAT 496 (939)
T PRK12902 420 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAV---TIAT 496 (939)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcE---EEec
Confidence 44689999999999999999999999999999999999999999999999886 2334455677764333333 7799
Q ss_pred cccccccCc
Q 000642 1132 RAGGLGINL 1140 (1377)
Q Consensus 1132 rAGGlGINL 1140 (1377)
..+|.|-+.
T Consensus 497 NMAGRGTDI 505 (939)
T PRK12902 497 NMAGRGTDI 505 (939)
T ss_pred cCCCCCcCE
Confidence 999999664
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.45 E-value=0.64 Score=61.09 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=82.1
Q ss_pred ccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCe
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLK 513 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~ 513 (1377)
...|-+-|.+++..+.. +.-.||--..|.|||...-+++..+....+ ..++++++|.........|.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHHHHHHhc----CCc
Confidence 34689999999987643 346899999999999888777776654322 147888899877666554431 100
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccCC
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCR 593 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~ 593 (1377)
.. .+..+.. +..... ...... .....++||||||+.+-.. .....+..+...
T Consensus 392 a~----------Tih~lL~----~~~~~~----------~~~~~~--~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~ 443 (720)
T TIGR01448 392 AS----------TIHRLLG----YGPDTF----------RHNHLE--DPIDCDLLIVDESSMMDTW--LALSLLAALPDH 443 (720)
T ss_pred cc----------cHHHHhh----ccCCcc----------chhhhh--ccccCCEEEEeccccCCHH--HHHHHHHhCCCC
Confidence 00 0011110 000000 000000 1135789999999999432 345555667777
Q ss_pred ceEEeecCCCC
Q 000642 594 NRLLLTGTPIQ 604 (1377)
Q Consensus 594 ~rLlLTGTPIQ 604 (1377)
.+++|-|=|-|
T Consensus 444 ~rlilvGD~~Q 454 (720)
T TIGR01448 444 ARLLLVGDTDQ 454 (720)
T ss_pred CEEEEECcccc
Confidence 89999999877
No 186
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.20 E-value=0.2 Score=60.77 Aligned_cols=131 Identities=19% Similarity=0.236 Sum_probs=96.2
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHH----HHHHhCCC----cEEEecCCCCHHHHHHHHHHhccCCCce
Q 000642 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILE----DYMNYRKY----RYLRLDGSSTIMDRRDMVRDFQHRSDIF 1125 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLe----e~L~~~g~----~y~rLDGstk~edR~~~V~~Fq~~~di~ 1125 (1377)
.+.|+.-...++.++...|-|+|-|+...+.-.++- +.|..-+- .++.+.|+-..+||+.+-.+.-. +...
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~ 585 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLC 585 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-Ceee
Confidence 367888888899999999999999999887655432 22211111 23445677788999998777654 4554
Q ss_pred EEEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHH
Q 000642 1126 VFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEK 1188 (1377)
Q Consensus 1126 VfLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEEr 1188 (1377)
- +++|.|..+||++-.-|.||.+--+..-++..|-.|||+|-... ..+|| ....+-|+..
T Consensus 586 g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~-SLavy-va~~~PVDQ~ 645 (1034)
T KOG4150|consen 586 G-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP-SLAVY-VAFLGPVDQY 645 (1034)
T ss_pred E-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC-ceEEE-EEeccchhhH
Confidence 4 88999999999999999999999999999999999999995432 23443 2334455543
No 187
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.10 E-value=0.66 Score=56.22 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=74.7
Q ss_pred CCCCcHHHHHHH-HHHHHHHhcc---cCCcEE-EEeC-cccHHHHHHHHHHHCC--CCeeEeecCChhhhHHHhhccCc-
Q 000642 463 EMGLGKTIQAMA-FLAHLAEEKN---IWGPFL-VVAP-ASVLNNWADEISRFCP--DLKTLPYWGGLQERMVLRKNINP- 533 (1377)
Q Consensus 463 EMGLGKTIQsIA-lLa~L~e~~~---i~gp~L-IV~P-~Sll~nW~~Ei~kf~p--~l~vl~y~Gs~~~rk~lrk~~~~- 533 (1377)
-.|.|||---|- .+.|+.+... -.||++ |+|| -.+..|-..|.++|+. +++++..+|.... |.+
T Consensus 268 ktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk-------~eQ~ 340 (731)
T KOG0339|consen 268 KTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSK-------WEQS 340 (731)
T ss_pred eccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcH-------HHHH
Confidence 366777654332 2344443322 247875 5568 5678899999999964 5676665554321 111
Q ss_pred ccccccCCCeeEEEEechhhhhhhhh--hhccceeEEEEcccccccCch--hHHHHHHHhcc-CCceEEeecC
Q 000642 534 KRLYRRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKSSN--SIRWKTLLSFN-CRNRLLLTGT 601 (1377)
Q Consensus 534 k~l~~~~~~f~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKN~~--S~r~kal~~l~-~~~rLlLTGT 601 (1377)
+.| .....+||+|.+.+..-.+. ..-.+-.|+|||||.++-... -+.-.....++ -+..|+.++|
T Consensus 341 k~L---k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 341 KEL---KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred Hhh---hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 111 14567999999988654332 223466899999999985522 11111222333 3456888887
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.10 E-value=0.85 Score=58.44 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc--CCcEEEEeCcccHHH-HHHHHHHHCCCCeeE
Q 000642 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI--WGPFLVVAPASVLNN-WADEISRFCPDLKTL 515 (1377)
Q Consensus 439 ~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i--~gp~LIV~P~Sll~n-W~~Ei~kf~p~l~vl 515 (1377)
+.|..++...+. +.-.||.-..|.|||.+...++..+....+. ...+++++|..-... ..+-+......+..-
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789999876654 4467899999999999999998887654322 136899999765443 333333322111100
Q ss_pred eecCChhhhHHHhhccCcccccccCCCeeEEEEec-h--hhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccC
Q 000642 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSY-Q--LLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNC 592 (1377)
Q Consensus 516 ~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSY-e--~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~ 592 (1377)
......+ .+....+ |-++-.. . .+..+ .-....+++||||||-.+-. ....+.+..+..
T Consensus 224 -----~~~~~~~--~~~a~Ti-------HrlLg~~~~~~~~~~~--~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----EALIAAL--PSEAVTI-------HRLLGIKPDTKRFRHH--ERNPLPLDVLVVDEASMVDL--PLMAKLLKALPP 285 (586)
T ss_pred -----hhhhhcc--ccccchh-------hhhhcccCCcchhhhc--ccCCCcccEEEEcccccCCH--HHHHHHHHhcCC
Confidence 0000000 0000000 0000000 0 00000 01123689999999999943 345556667777
Q ss_pred CceEEeecCCCC
Q 000642 593 RNRLLLTGTPIQ 604 (1377)
Q Consensus 593 ~~rLlLTGTPIQ 604 (1377)
..|++|.|=|-|
T Consensus 286 ~~rlIlvGD~~Q 297 (586)
T TIGR01447 286 NTKLILLGDKNQ 297 (586)
T ss_pred CCEEEEECChhh
Confidence 889999999877
No 189
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.05 E-value=0.44 Score=62.45 Aligned_cols=91 Identities=15% Similarity=0.266 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhccC---CCceEEEEeccc
Q 000642 1058 LQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHR---SDIFVFLLSTRA 1133 (1377)
Q Consensus 1058 L~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~-g~~y~rLDGstk~edR~~~V~~Fq~~---~di~VfLLSTrA 1133 (1377)
...+.+.|.++...+.++|||+..-++|..+..+|... ++. +...|. ..|..+++.|..+ ++--| |+.|.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~V-L~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSV-LFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeE-EEEecc
Confidence 34455555554444445899988889999888888643 333 344564 3578899888752 23334 777888
Q ss_pred cccccCcCc--CCEEEEeCCCC
Q 000642 1134 GGLGINLTA--ADTVIFYESDW 1153 (1377)
Q Consensus 1134 GGlGINLTa--AdtVIfyDsdW 1153 (1377)
-.+||++.+ +..||+.=.|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999975 78899988776
No 190
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=92.99 E-value=0.78 Score=54.52 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHH--HHHHHHHHHhcccCCcEEEEeCc-ccHHHHHHHHHHHCCCCeeE
Q 000642 439 EYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQA--MAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDLKTL 515 (1377)
Q Consensus 439 ~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQs--IAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~Ei~kf~p~l~vl 515 (1377)
+-|.++++-.+. ......+...+|.||++.- =+|+ . . |-++||.|. .|+..-.+.+.+.--...-+
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~----~-~---gITIV~SPLiALIkDQiDHL~~LKVp~~SL 91 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV----H-G---GITIVISPLIALIKDQIDHLKRLKVPCESL 91 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH----h-C---CeEEEehHHHHHHHHHHHHHHhcCCchhHh
Confidence 468888877775 2335689999999998632 2222 1 1 467888894 45555667776532111111
Q ss_pred eecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhh--hh----hhccceeEEEEcccccccC------chhHH
Q 000642 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE--KY----FRRVKWQYMVLDEAQAIKS------SNSIR 583 (1377)
Q Consensus 516 ~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~--~~----l~~~~w~~VIlDEAH~iKN------~~S~r 583 (1377)
--.-+..+|+.+-...... -....++-+|.++...+. +. ..+....|+|+||||-+.. +.=.+
T Consensus 92 NSKlSt~ER~ri~~DL~~e-----kp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~ 166 (641)
T KOG0352|consen 92 NSKLSTVERSRIMGDLAKE-----KPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLT 166 (641)
T ss_pred cchhhHHHHHHHHHHHHhc-----CCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhh
Confidence 1122345555443332211 123456666666654431 11 2234578999999998743 22223
Q ss_pred HHHHHhc-cCCceEEeecCCCCCCHHHHHHHHHhhcCC
Q 000642 584 WKTLLSF-NCRNRLLLTGTPIQNNMAELWALLHFIMPT 620 (1377)
Q Consensus 584 ~kal~~l-~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~ 620 (1377)
.-.|++- ...-.+.||||--..--+|++..||+-.|-
T Consensus 167 LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV 204 (641)
T KOG0352|consen 167 LGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV 204 (641)
T ss_pred hhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH
Confidence 3333332 233357899998777778999999998774
No 191
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.88 E-value=0.14 Score=56.71 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=68.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCC--cEEEEeCc-ccHHHHHHHHH---HHCCCCeeEeecCChhhhHHHhhccC
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWG--PFLVVAPA-SVLNNWADEIS---RFCPDLKTLPYWGGLQERMVLRKNIN 532 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~g--p~LIV~P~-Sll~nW~~Ei~---kf~p~l~vl~y~Gs~~~rk~lrk~~~ 532 (1377)
+.-.-.|+|||.. -+|+.|..-.++.| .+||+|-. -|..|-..|.. ++.|+.++.+++|+....+.-.-
T Consensus 83 lcqaksgmgktav--fvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~--- 157 (387)
T KOG0329|consen 83 LCQAKSGMGKTAV--FVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL--- 157 (387)
T ss_pred heecccCCCceee--eehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH---
Confidence 4445679999954 33444444444444 46777764 34557777765 55799999999997543321111
Q ss_pred cccccccCCCeeEEEEechhhhhh--hhhhhccceeEEEEcccccccC
Q 000642 533 PKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 533 ~k~l~~~~~~f~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKN 578 (1377)
+ + ...|||+-|...+..- .++|.--+....||||+..+-.
T Consensus 158 ---l--k-~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 158 ---L--K-NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred ---H--h-CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 1 1 2568999998877543 2344444567889999987743
No 192
>PRK04296 thymidine kinase; Provisional
Probab=92.82 E-value=0.4 Score=52.44 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=25.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
.++.-+||.|||..++.++..+... + .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~-g--~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER-G--MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc-C--CeEEEEec
Confidence 4677799999999999988877653 2 46677755
No 193
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.71 Score=55.44 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCC---EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 441 QLKGLQWLVNCYEQGLN---GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~n---GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
|-..+..|...+..|.. -++.-+.|+|||.-+..+...+.+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45566788888887763 5789999999999999999998873
No 194
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.51 E-value=1.1 Score=58.47 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=78.1
Q ss_pred hCCCeEEEEeccchHHHHHHHHHHhCCC-cEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCc--CCEE
Q 000642 1070 AENHRVLLFAQMTKMLNILEDYMNYRKY-RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA--ADTV 1146 (1377)
Q Consensus 1070 ~~ghKVLIFSQ~t~mLDiLee~L~~~g~-~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTa--AdtV 1146 (1377)
..+.++|||+..-.+|..+.++|..... ..+...|... +..+++.|....+. .||+.+..-.+|||+.+ ...|
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEE
Confidence 3455999999999999999999987665 3555566554 45899999997765 67899999999999986 5889
Q ss_pred EEeCCCCC-hh-----------------------------hhhHhhhchhccCCcCcEEE
Q 000642 1147 IFYESDWN-PT-----------------------------LDLQAMDRAHRLGQTKDVTV 1176 (1377)
Q Consensus 1147 IfyDsdWN-Pt-----------------------------~d~QAmdRaHRiGQtk~VtV 1176 (1377)
|+.=.|+= |. ...||+||+.|-=+-+-|.|
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 98887773 31 22599999999444444444
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.24 E-value=0.98 Score=58.06 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcc-cCCcEEEEeCcccHHHHHHH-HHHHCCCCeeE
Q 000642 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPASVLNNWADE-ISRFCPDLKTL 515 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~-i~gp~LIV~P~Sll~nW~~E-i~kf~p~l~vl 515 (1377)
-+.|..++.-... ..-.||.-.+|.|||.+.-.+++.+.+... ....+++++|..-...=..| +..-...+...
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 4799999965443 445789999999999999998888765322 12367888997654443333 22211111100
Q ss_pred ee--cCChhhhHHHhhccCcccccccCCCeeEEEEechh-hhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccC
Q 000642 516 PY--WGGLQERMVLRKNINPKRLYRRDAGFHILITSYQL-LVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNC 592 (1377)
Q Consensus 516 ~y--~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~-l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~ 592 (1377)
.. ...+..-..+....... ..+. +..+ .-....+++||||||-.+- ....++.+..+..
T Consensus 230 ~~~~~~~~~~a~TiHrlLg~~--------------~~~~~~~~~--~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 230 DEQKKRIPEEASTLHRLLGAQ--------------PGSQRLRYH--AGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred hhhhhcCCCchHHHHHHhCcC--------------CCccchhhc--cccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 00 00000000111110000 0000 0000 0112367999999999994 4455666777888
Q ss_pred CceEEeecCCCC
Q 000642 593 RNRLLLTGTPIQ 604 (1377)
Q Consensus 593 ~~rLlLTGTPIQ 604 (1377)
..|++|-|=|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 899999999877
No 196
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.17 E-value=0.57 Score=53.78 Aligned_cols=128 Identities=22% Similarity=0.282 Sum_probs=78.0
Q ss_pred CCCCcHHHHH-HHHHHHHHHhcccCCcEEEEeCcc----cHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCccccc
Q 000642 463 EMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAPAS----VLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLY 537 (1377)
Q Consensus 463 EMGLGKTIQs-IAlLa~L~e~~~i~gp~LIV~P~S----ll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~ 537 (1377)
--|.|||-.- |-+|-.+-...+. --.+|++|.- -..|-..|+.++. ++++.+-.|+..-|. ++.
T Consensus 130 KNGTGKT~a~~IP~Lekid~~~~~-IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrD---------DI~ 198 (459)
T KOG0326|consen 130 KNGTGKTAAYCIPVLEKIDPKKNV-IQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRD---------DIM 198 (459)
T ss_pred cCCCCCccceechhhhhcCccccc-eeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCccccc---------cee
Confidence 4689999643 2233222222221 2468999933 2557888888887 488888888654332 122
Q ss_pred ccCCCeeEEEEechhhhhhhh--hhhccceeEEEEcccccccCch--hHHHHHHHhc-cCCceEEeecC
Q 000642 538 RRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSN--SIRWKTLLSF-NCRNRLLLTGT 601 (1377)
Q Consensus 538 ~~~~~f~VvItSYe~l~~d~~--~l~~~~w~~VIlDEAH~iKN~~--S~r~kal~~l-~~~~rLlLTGT 601 (1377)
.-....|++|.|...+..-.+ .-.--+...+|+|||..+-+.. ...-+.+.-+ +.+..++.|||
T Consensus 199 Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 199 RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 234678999999988765322 1112256789999999997643 2223333333 55566777887
No 197
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.11 E-value=0.89 Score=56.38 Aligned_cols=43 Identities=28% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCC-C--EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL-N--GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~-n--GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+....|. + -|+.-+.|.|||-.+..+...+.+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 4444444444444443 2 38999999999999999998887653
No 198
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=91.08 E-value=2.5 Score=55.25 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=100.5
Q ss_pred cchhHHHHHH----HHHHHHh-----cCCCEEEEeCCCCcHHHHHHHHH-HHHHHhcccCCcEEEEeC-cccHHHHHHHH
Q 000642 437 LKEYQLKGLQ----WLVNCYE-----QGLNGILADEMGLGKTIQAMAFL-AHLAEEKNIWGPFLVVAP-ASVLNNWADEI 505 (1377)
Q Consensus 437 Lr~YQlkGL~----WL~~ly~-----~g~nGILADEMGLGKTIQsIAlL-a~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei 505 (1377)
.-.|+.+|+. |.+.+|. .+.|.|.+-..+-|||+.+=-++ +.+.+.. +..|.|.| .+++.-=..++
T Consensus 213 ~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 213 HLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeehhHHHHhhh
Confidence 3456777763 5555443 57789999999999999884444 3444332 45688888 44444445555
Q ss_pred HHHCC--CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhc----cceeEEEEcccccccCc
Q 000642 506 SRFCP--DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRR----VKWQYMVLDEAQAIKSS 579 (1377)
Q Consensus 506 ~kf~p--~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~----~~w~~VIlDEAH~iKN~ 579 (1377)
.-|.- ++.|--|.|....- .....-+|.|+|-+.--....-+-. -.-..||+||-|.|...
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~-------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPE-------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhhccccCCcchhhcccCCCC-------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 55543 46666677642211 1123457899999887666544432 23578999999999542
Q ss_pred h-hHH-----HHHHHhccC--CceEEeecCCCCCCHHHHHHHHHhhcCCCCCC
Q 000642 580 N-SIR-----WKTLLSFNC--RNRLLLTGTPIQNNMAELWALLHFIMPTLFDS 624 (1377)
Q Consensus 580 ~-S~r-----~kal~~l~~--~~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds 624 (1377)
. ... .+.+..-.. -..++||+|-.+|.+-.-|-- .|+-++-|..
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRP 408 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRP 408 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheecccCc
Confidence 2 111 111111111 235899999876665444332 4665554443
No 199
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.96 E-value=0.21 Score=55.39 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=62.0
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
.+..|-.+|..||.-|.- ..|+||-..+.- +. |+. + |++|.
T Consensus 266 ke~eKNrkl~dLLd~LeF--NQVvIFvKsv~R------------------------------l~-f~k----r--~vat~ 306 (387)
T KOG0329|consen 266 KENEKNRKLNDLLDVLEF--NQVVIFVKSVQR------------------------------LS-FQK----R--LVATD 306 (387)
T ss_pred hhhhhhhhhhhhhhhhhh--cceeEeeehhhh------------------------------hh-hhh----h--hHHhh
Confidence 445677777777777643 368888654332 11 433 2 77899
Q ss_pred ccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCc
Q 000642 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT 1171 (1377)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQt 1171 (1377)
.-|.|++....|.||+||.+-.+.....+.+||+|.|-+
T Consensus 307 lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 307 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred hhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999965
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.90 E-value=0.61 Score=46.29 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
+.+-+|.-.+|.|||..+..++..+.... ..++++.+......|...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHH
Confidence 34567888999999999999888776543 356777776665554443
No 201
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.86 E-value=0.86 Score=53.87 Aligned_cols=142 Identities=23% Similarity=0.295 Sum_probs=85.1
Q ss_pred cCCCEEEEeCCCCcHHHHHHH--H---HHHHHHhcccCC-cEEEEeCccc-HHHHHHHHHHHC-CC-CeeEeecCChhhh
Q 000642 454 QGLNGILADEMGLGKTIQAMA--F---LAHLAEEKNIWG-PFLVVAPASV-LNNWADEISRFC-PD-LKTLPYWGGLQER 524 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIA--l---La~L~e~~~i~g-p~LIV~P~Sl-l~nW~~Ei~kf~-p~-l~vl~y~Gs~~~r 524 (1377)
+|+-.|-...+|.|||+.-+. + .+.........+ .+||++|..- ..|-.-|..++. -+ ..+.+|.|....-
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE 335 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh
Confidence 688889999999999986432 1 122222222223 3688889544 445556665543 23 4455666543222
Q ss_pred --HHHhhccCcccccccCCCeeEEEEechhhhhh--hhhhhccceeEEEEcccccccC--chhHHHHHHHhccCCceEEe
Q 000642 525 --MVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSFNCRNRLLL 598 (1377)
Q Consensus 525 --k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKN--~~S~r~kal~~l~~~~rLlL 598 (1377)
..++ ...+++|.+...+..- ...+.--...|+|||||.++-. ..-+..+.|+.++..+-.+|
T Consensus 336 qie~lk------------rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvm 403 (629)
T KOG0336|consen 336 QIEDLK------------RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVM 403 (629)
T ss_pred HHHHHh------------cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeee
Confidence 2223 3456888888776432 1222223568999999999965 45677888888877776666
Q ss_pred ecCCCCCCH
Q 000642 599 TGTPIQNNM 607 (1377)
Q Consensus 599 TGTPIQNsm 607 (1377)
|..-....+
T Consensus 404 TSATWP~~V 412 (629)
T KOG0336|consen 404 TSATWPEGV 412 (629)
T ss_pred ecccCchHH
Confidence 554443333
No 202
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.59 E-value=0.77 Score=59.37 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhcc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKN 484 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~~ 484 (1377)
|-..++.|.+.+.+|. +. ||.-..|.|||..+..|...|.+..+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~ 67 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETG 67 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccC
Confidence 4555555666565543 34 78899999999999999988876543
No 203
>PLN03025 replication factor C subunit; Provisional
Probab=90.46 E-value=2 Score=50.92 Aligned_cols=40 Identities=28% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcC--CCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 442 LKGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 442 lkGL~WL~~ly~~g--~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
...+.+|..+...+ .+-||.-..|.|||-.+.++...+..
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 33444444433333 24689999999999999999887754
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.36 E-value=0.92 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
.+-||.-++|.|||..+-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34589999999999999888776654
No 205
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=89.36 E-value=0.13 Score=59.87 Aligned_cols=132 Identities=28% Similarity=0.418 Sum_probs=73.5
Q ss_pred eCCCCcHHHHHH-HHHHH-HHHhc-----ccCCcE-EEEeCcccHHH-HHHHHHHH--------CCCCeeEeecCChhhh
Q 000642 462 DEMGLGKTIQAM-AFLAH-LAEEK-----NIWGPF-LVVAPASVLNN-WADEISRF--------CPDLKTLPYWGGLQER 524 (1377)
Q Consensus 462 DEMGLGKTIQsI-AlLa~-L~e~~-----~i~gp~-LIV~P~Sll~n-W~~Ei~kf--------~p~l~vl~y~Gs~~~r 524 (1377)
.-+|.|||+.-. -++.. |-+.. ...||+ |||||.--+.. -.+-+..| .|.++.....|+..-+
T Consensus 214 AfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~ 293 (610)
T KOG0341|consen 214 AFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR 293 (610)
T ss_pred EeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH
Confidence 348999997632 22211 11111 112564 99999754443 22223333 3677777777776555
Q ss_pred HHHhhccCcccccccCCCeeEEEEechhhhhh--hhhhhccceeEEEEcccccccCchh-HHHHHHHh-c-cCCceEEee
Q 000642 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVAD--EKYFRRVKWQYMVLDEAQAIKSSNS-IRWKTLLS-F-NCRNRLLLT 599 (1377)
Q Consensus 525 k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d--~~~l~~~~w~~VIlDEAH~iKN~~S-~r~kal~~-l-~~~~rLlLT 599 (1377)
..+..- ....|+|+.|...+..- .+.+.---..|+.+|||.++-.-.- --.+.+.. | .-+..||.|
T Consensus 294 eql~~v---------~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFS 364 (610)
T KOG0341|consen 294 EQLDVV---------RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFS 364 (610)
T ss_pred HHHHHH---------hcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeee
Confidence 443221 14579999999887542 2222222357899999999854221 11233333 3 345678999
Q ss_pred cCC
Q 000642 600 GTP 602 (1377)
Q Consensus 600 GTP 602 (1377)
||-
T Consensus 365 ATM 367 (610)
T KOG0341|consen 365 ATM 367 (610)
T ss_pred ccc
Confidence 983
No 206
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.34 E-value=1.3 Score=57.34 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=37.2
Q ss_pred chhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHH
Q 000642 431 ELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAM 473 (1377)
Q Consensus 431 ~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsI 473 (1377)
-.|-.+.++-|+.-+.-++...+.+.+|+|-+.+|.|||+--|
T Consensus 16 V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 16 VEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 3344567999999999999999999999999999999998754
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.34 E-value=3.5 Score=45.85 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=30.2
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~ 502 (1377)
.+.+-+|--+.|.|||..+.++..++... +..++.+..+.+..|.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~~ 81 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQAD 81 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHhH
Confidence 34456788999999999999888776543 2234455555555443
No 208
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.04 E-value=2.9 Score=53.56 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
||.-..|.|||..+..|...|.+.
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 788999999999999999988763
No 209
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=1.3 Score=53.56 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-|...+..+.+.+..|. +. +|.-+.|.|||..+-++...+.+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 45555556666665542 34 799999999999999988887653
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.99 E-value=0.77 Score=60.46 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
||.-+.|.|||..+-.|...|.+..
T Consensus 42 LFtGPpGtGKTTLARiLAk~Lnce~ 66 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGLNCEQ 66 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhccCcc
Confidence 7999999999999999998887653
No 211
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=88.55 E-value=1.1 Score=58.91 Aligned_cols=152 Identities=19% Similarity=0.284 Sum_probs=80.1
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHH-HHHHHHHhcc---cCCc-EEEEeCc-ccHHHHHHHHHHHC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEKN---IWGP-FLVVAPA-SVLNNWADEISRFC 509 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIA-lLa~L~e~~~---i~gp-~LIV~P~-Sll~nW~~Ei~kf~ 509 (1377)
..++-|-.++=-+. .|.-.|---..|.|||+-=+. .+.|.....+ ..|| .||+||. -+..|-.+++.+|+
T Consensus 387 k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~ 462 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL 462 (997)
T ss_pred CCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 44555655543332 477788889999999986532 3344433221 1256 4888994 34445444444443
Q ss_pred --CCCee-EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhh----hhhhh-hhccceeEEEEcccccccC--c
Q 000642 510 --PDLKT-LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLV----ADEKY-FRRVKWQYMVLDEAQAIKS--S 579 (1377)
Q Consensus 510 --p~l~v-l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~----~d~~~-l~~~~w~~VIlDEAH~iKN--~ 579 (1377)
-++.+ .+|.|+.....+-.- .....|+|+|...+. ..... ..-.+-.++|+|||.++-. .
T Consensus 463 k~l~ir~v~vygg~~~~~qiael----------kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgf 532 (997)
T KOG0334|consen 463 KLLGIRVVCVYGGSGISQQIAEL----------KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGF 532 (997)
T ss_pred hhcCceEEEecCCccHHHHHHHH----------hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheecc
Confidence 24444 455555433322110 012457887766543 22222 2233567999999999832 2
Q ss_pred hhHHHHHHHhccCC-ceEEeecC
Q 000642 580 NSIRWKTLLSFNCR-NRLLLTGT 601 (1377)
Q Consensus 580 ~S~r~kal~~l~~~-~rLlLTGT 601 (1377)
.-+.++.+..+... -.++-++|
T Consensus 533 ePq~~~Ii~nlrpdrQtvlfSat 555 (997)
T KOG0334|consen 533 EPQITRILQNLRPDRQTVLFSAT 555 (997)
T ss_pred CcccchHHhhcchhhhhhhhhhh
Confidence 22223355555332 23444555
No 212
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=88.51 E-value=3.4 Score=54.12 Aligned_cols=175 Identities=22% Similarity=0.218 Sum_probs=97.1
Q ss_pred ccCCCCCCCCCCcccCCchhc---cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEE
Q 000642 414 DLHNPSTMPVTSTVQTPELFK---GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFL 490 (1377)
Q Consensus 414 ~~~~~~~~~~~~~v~qP~~l~---~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~L 490 (1377)
++..|........+..|.... ..|-.-|.+|+.-.+...+.-+ |++ =+|.|||-...+++..|...+ +.+|
T Consensus 644 d~~pP~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy~L--I~G-MPGTGKTTtI~~LIkiL~~~g---kkVL 717 (1100)
T KOG1805|consen 644 DLKPPKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALAAEDYAL--ILG-MPGTGKTTTISLLIKILVALG---KKVL 717 (1100)
T ss_pred hcCCchhhcccccccCchhhHHHHhhcCHHHHHHHHHHHhccchhe--eec-CCCCCchhhHHHHHHHHHHcC---CeEE
Confidence 344444443334455565544 4788999999976655443321 333 489999998888888887653 4677
Q ss_pred EEeC-cccHHHHHHHHHHHCCCCeeEeecCChhh-hHHHhhccCc-----cc---ccccCCCeeEEEEechhhhhhhhhh
Q 000642 491 VVAP-ASVLNNWADEISRFCPDLKTLPYWGGLQE-RMVLRKNINP-----KR---LYRRDAGFHILITSYQLLVADEKYF 560 (1377)
Q Consensus 491 IV~P-~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~-rk~lrk~~~~-----k~---l~~~~~~f~VvItSYe~l~~d~~~l 560 (1377)
+.+= .|.+.|-.--+..+.-. ++ --|+... -..++++-.. +. +-.......||.+|-=-+ ....|
T Consensus 718 LtsyThsAVDNILiKL~~~~i~--~l-RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf 792 (1100)
T KOG1805|consen 718 LTSYTHSAVDNILIKLKGFGIY--IL-RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLF 792 (1100)
T ss_pred EEehhhHHHHHHHHHHhccCcc--ee-ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--Cchhh
Confidence 7776 45578877666655321 11 1232211 1111221100 00 000112233454443222 24556
Q ss_pred hccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCC
Q 000642 561 RRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQ 604 (1377)
Q Consensus 561 ~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQ 604 (1377)
....|||+|||||-.|--+- .|--+.-.++.+|-|-+.|
T Consensus 793 ~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 67789999999997775442 2333456677888887766
No 213
>PRK06526 transposase; Provisional
Probab=88.39 E-value=1 Score=51.70 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
++.++.|+. .+.|-+|.-..|.|||..+.++...+... +. +++++ ....|.+++..
T Consensus 88 ~l~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~--~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 88 HLGTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQA-GH--RVLFA----TAAQWVARLAA 143 (254)
T ss_pred HHhcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHC-CC--chhhh----hHHHHHHHHHH
Confidence 445557774 46788999999999999999988776643 32 33332 33467777653
No 214
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.17 E-value=1.6 Score=52.79 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 451 ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
++.++.--||.-|.|.|||-|.=-+.....-.+. ..|.|.
T Consensus 58 ~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CT 97 (699)
T KOG0925|consen 58 LLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACT 97 (699)
T ss_pred HHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeec
Confidence 4445556789999999999998776665544332 467774
No 215
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.10 E-value=2.6 Score=57.27 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=55.8
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH-H-HHHHH---HHHCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-N-WADEI---SRFCP 510 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~-n-W~~Ei---~kf~p 510 (1377)
..|+-|.+-++-+...+..+...++=-.+|.|||+--+.-..+.+...+ +|++|-++...+. | +.+++ .+.+|
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~--~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~ 334 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKE--EPVVISTYTIQLQQQLLEKDIPLLQKIFP 334 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccC--CeEEEEcCCHHHHHHHHHhhHHHHHHHcC
Confidence 5799999999888888887877777779999999987554444443222 5777777755444 4 55554 44443
Q ss_pred -CCeeEeecC
Q 000642 511 -DLKTLPYWG 519 (1377)
Q Consensus 511 -~l~vl~y~G 519 (1377)
++++.+..|
T Consensus 335 ~~~~~~~lKG 344 (928)
T PRK08074 335 FPVEAALLKG 344 (928)
T ss_pred CCceEEEEEc
Confidence 456665554
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=87.88 E-value=2.5 Score=53.64 Aligned_cols=154 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH-HHHHHHHH---CC
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN-WADEISRF---CP 510 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n-W~~Ei~kf---~p 510 (1377)
-.|.|+|..-+.+|.. +.--|+.-.=..|||..+.+++.+++.... ...+++++|..-... =-+.+... .|
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 3589999998877631 222366667889999999887777665433 246777888321111 11233322 23
Q ss_pred CCeeEeecCChhhhHHHhhccCccccccc-CCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHh
Q 000642 511 DLKTLPYWGGLQERMVLRKNINPKRLYRR-DAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 511 ~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~-~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~ 589 (1377)
.+... + . ..++...+.-. .+.+.++ + ++....+....+++|+||+|.+++.. ..+.++..
T Consensus 133 ~l~~~---~------i--~~~~~~~I~l~NGS~I~~l-s------s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p 193 (534)
T PHA02533 133 DFLQP---G------I--VEWNKGSIELENGSKIGAY-A------SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQP 193 (534)
T ss_pred HHhhc---c------e--eecCccEEEeCCCCEEEEE-e------CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHH
Confidence 21100 0 0 00111111111 1122222 2 22233455677899999999998754 33343332
Q ss_pred -cc--CCceEEeecCCC-CCCHHHHHH
Q 000642 590 -FN--CRNRLLLTGTPI-QNNMAELWA 612 (1377)
Q Consensus 590 -l~--~~~rLlLTGTPI-QNsm~ELws 612 (1377)
+. ...++++..||- .|...++|.
T Consensus 194 ~lasg~~~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 194 VISSGRSSKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred HHHcCCCceEEEEECCCchhhHHHHHH
Confidence 22 224688889994 234444443
No 217
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.87 E-value=1.5 Score=52.27 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=79.9
Q ss_pred CCCCcHHHHH-HHHHHHHHHhcccCCcEEEEeCccc-HHH---HHHHHHHHCCCCeeEeecCChhhhHHHhhccCccccc
Q 000642 463 EMGLGKTIQA-MAFLAHLAEEKNIWGPFLVVAPASV-LNN---WADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLY 537 (1377)
Q Consensus 463 EMGLGKTIQs-IAlLa~L~e~~~i~gp~LIV~P~Sl-l~n---W~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~ 537 (1377)
=+|.|||..= |-.+..|+......-+.||+.|..= ..| ...++.++..--.++.|.|...+.+...
T Consensus 66 rtgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~--------- 136 (529)
T KOG0337|consen 66 RTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFIL--------- 136 (529)
T ss_pred ecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHH---------
Confidence 3788999764 3445556554433347899999543 333 4455555553333446666554433211
Q ss_pred ccCCCeeEEEEechhhhhhhhh--hhccceeEEEEcccccccC--chhHHHHHHHhc-cCCceEEeecCC
Q 000642 538 RRDAGFHILITSYQLLVADEKY--FRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSF-NCRNRLLLTGTP 602 (1377)
Q Consensus 538 ~~~~~f~VvItSYe~l~~d~~~--l~~~~w~~VIlDEAH~iKN--~~S~r~kal~~l-~~~~rLlLTGTP 602 (1377)
-....||||.|...+..-... |.--...|||+|||.+|-. .+-+..+.+..+ -.+-.+++|||-
T Consensus 137 -l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 137 -LNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred -hccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 113568999888776443211 3333568999999999843 456677777777 455789999994
No 218
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=87.14 E-value=4 Score=53.63 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=28.3
Q ss_pred CeeEEEEechhhhhhhhh-----hhccceeEEEEcccccccC
Q 000642 542 GFHILITSYQLLVADEKY-----FRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 542 ~f~VvItSYe~l~~d~~~-----l~~~~w~~VIlDEAH~iKN 578 (1377)
..|||||++..+..|... |......++||||||++-.
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 347999999999888642 2223578899999999954
No 219
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.13 E-value=5.7 Score=50.25 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhcc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKN 484 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~~ 484 (1377)
|-..+..|.+.+..+. .. |+.-..|.|||..+-.+...+.+..+
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~ 67 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKG 67 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 4444555666555442 23 78999999999999999988876543
No 220
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=87.09 E-value=2.1 Score=55.14 Aligned_cols=43 Identities=28% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCC--C-EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--n-GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+.+..|. . .|+.-..|.|||..+-.|...|.+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET 66 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc
Confidence 4444445555555543 2 47899999999999999999888753
No 221
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.02 E-value=2.1 Score=55.64 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHhcCC-CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHHHHHCCCCeeE
Q 000642 438 KEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEISRFCPDLKTL 515 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly~~g~-nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei~kf~p~l~vl 515 (1377)
...|-+++.-|.+....|. .-+|.--.|.|||..+..++..+ .+|+|||+|.-. ..||..||+.|+|+-.|.
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~ 84 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPENAVE 84 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 4577777777777666553 34677789999999987776543 269999999555 668999999999875454
Q ss_pred e
Q 000642 516 P 516 (1377)
Q Consensus 516 ~ 516 (1377)
.
T Consensus 85 ~ 85 (655)
T TIGR00631 85 Y 85 (655)
T ss_pred E
Confidence 3
No 222
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.91 E-value=6.7 Score=48.37 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=104.2
Q ss_pred cchHHHHHH-HHHHHh-h-CCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1055 SGKLQTLDI-LLKRLR-A-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1055 SgKL~~L~~-LL~~Lk-~-~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
..++..... +|..+. . ...++|||...---.-.|..||...++.|+.++--++..+-..+-..|.. ++..|+|.+=
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEh
Confidence 345665544 777777 3 34689999754333345789999999999999999999999999999998 6788988887
Q ss_pred ccc-ccccCcCcCCEEEEeCCCCChhhhhHhhhchhccC----CcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHcC
Q 000642 1132 RAG-GLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG----QTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1206 (1377)
Q Consensus 1132 rAG-GlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiG----Qtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g 1206 (1377)
|+- =.=..+-++.+||||-||=||.-...-+.-...-. +...++|.-|.++- |---++|...-....+++-+.
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~--D~~~LErIVGt~ra~~ml~~~ 436 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY--DALRLERIVGTERASKMLQSD 436 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh--HHHHHHHHhCHHHHHHHhcCC
Confidence 772 22345678999999999999998877765444332 34567777777763 333344444444444444443
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.89 E-value=7 Score=44.29 Aligned_cols=39 Identities=23% Similarity=0.097 Sum_probs=26.1
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 443 KGLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 443 kGL~WL~~ly~--~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
..+.++..+.. .+.+-+|.-..|.|||--+.++..++..
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555544432 2235688999999999988887766653
No 224
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=86.43 E-value=2.6 Score=49.94 Aligned_cols=145 Identities=21% Similarity=0.258 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHHHHhcCCC-EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccH---------------HH
Q 000642 437 LKEYQLKGLQWLVNCYEQGLN-GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL---------------NN 500 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~n-GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll---------------~n 500 (1377)
.--||.-+|.-|.. .-+. ..|.-.-|.|||+-|+|.-.+--......+.++|--|..-+ .-
T Consensus 229 rn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 229 RNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred ccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 34488888865543 2222 46777899999999988655544444555665555554322 23
Q ss_pred HHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCch
Q 000642 501 WADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSN 580 (1377)
Q Consensus 501 W~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~ 580 (1377)
|.+-|.. ++.++.-..... -..+.....+. ...|--.||=.= +.+.=.+|||||||++--.
T Consensus 306 Wmq~i~D---nLE~L~~~~~~~-~~~l~~~l~~~-------~iev~alt~IRG-------RSl~~~FiIIDEaQNLTph- 366 (436)
T COG1875 306 WMQAIFD---NLEVLFSPNEPG-DRALEEILSRG-------RIEVEALTYIRG-------RSLPDSFIIIDEAQNLTPH- 366 (436)
T ss_pred hHHHHHh---HHHHHhcccccc-hHHHHHHHhcc-------ceeeeeeeeecc-------cccccceEEEehhhccCHH-
Confidence 5444422 111111000000 01111111110 111111111110 1234568999999999432
Q ss_pred hHHHHHHHhccCCceEEeecCCCC
Q 000642 581 SIRWKTLLSFNCRNRLLLTGTPIQ 604 (1377)
Q Consensus 581 S~r~kal~~l~~~~rLlLTGTPIQ 604 (1377)
..--.+...-...++.|||-|-|
T Consensus 367 -eikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 367 -ELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred -HHHHHHHhccCCCEEEEcCCHHH
Confidence 23233445567789999999987
No 225
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.43 E-value=2.7 Score=53.83 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHHH---------HHCC
Q 000642 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEIS---------RFCP 510 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei~---------kf~p 510 (1377)
=+.-+.-+.+.|.+....+++ +=|-|||-....++++++...++ .++|.+| .++...--.++. .|+|
T Consensus 174 ~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi--~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp 250 (752)
T PHA03333 174 TLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEI--DIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFP 250 (752)
T ss_pred hHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCC--eEEEECCChhhHHHHHHHHHHHHHHhccccccC
Confidence 344567788899998887776 48999999999888888754443 6888899 333333333333 3444
Q ss_pred CCeeEe-ecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHh
Q 000642 511 DLKTLP-YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 511 ~l~vl~-y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~ 589 (1377)
....++ ..|+... -.++.+.. .++..-.+ ....+.....+...++++|+|||+.|.. ..+.++.-
T Consensus 251 ~~~~iv~vkgg~E~----I~f~~p~g--ak~G~sti-----~F~Ars~~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP 316 (752)
T PHA03333 251 EEFKIVTLKGTDEN----LEYISDPA--AKEGKTTA-----HFLASSPNAARGQNPDLVIVDEAAFVNP---GALLSVLP 316 (752)
T ss_pred CCceEEEeeCCeeE----EEEecCcc--cccCccee-----EEecccCCCcCCCCCCEEEEECcccCCH---HHHHHHHH
Confidence 332111 1111000 00000000 00000001 1111122234445789999999999976 33344433
Q ss_pred c--cCCceEEeecCCCC
Q 000642 590 F--NCRNRLLLTGTPIQ 604 (1377)
Q Consensus 590 l--~~~~rLlLTGTPIQ 604 (1377)
+ ....++++.-||..
T Consensus 317 ~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 317 LMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHccCCCceEEEeCCCC
Confidence 3 24677777778753
No 226
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=86.33 E-value=15 Score=49.01 Aligned_cols=133 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred HHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-----HHHHHHHHHHHCCCCeeEeecCChh
Q 000642 448 LVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-----LNNWADEISRFCPDLKTLPYWGGLQ 522 (1377)
Q Consensus 448 L~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-----l~nW~~Ei~kf~p~l~vl~y~Gs~~ 522 (1377)
+.....+..-.||.-|+|.|||-|.=-+|....- +..|.+.+.=|--+ -.-=.+|+..-. + ..+=|.--
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~-G-~~VGY~iR-- 131 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKL-G-ETVGYSIR-- 131 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCc-C-ceeeEEEE--
Confidence 3444456667899999999999998776654432 33344444446433 222233332111 1 11112110
Q ss_pred hhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh-hhccceeEEEEcccccccCchhHHHHHHHhc--------c-C
Q 000642 523 ERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY-FRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--------N-C 592 (1377)
Q Consensus 523 ~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~-l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l--------~-~ 592 (1377)
++.+ -...-.+-++|=.++.+.... ..--.+++||+||||. .|...-.++.+ + -
T Consensus 132 --------fe~~----~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 132 --------FESK----VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred --------eecc----CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCC
Confidence 0000 012234667777777765431 1123679999999995 34433333332 2 1
Q ss_pred CceEEeecCC
Q 000642 593 RNRLLLTGTP 602 (1377)
Q Consensus 593 ~~rLlLTGTP 602 (1377)
-+.|++|||=
T Consensus 196 LKiIimSATl 205 (845)
T COG1643 196 LKLIIMSATL 205 (845)
T ss_pred ceEEEEeccc
Confidence 2458899994
No 227
>CHL00181 cbbX CbbX; Provisional
Probab=86.26 E-value=2 Score=50.20 Aligned_cols=44 Identities=27% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCcccH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVL 498 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sll 498 (1377)
|.+-+|.-.+|.|||..|-++...+....-. .++++.|....++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 4456889999999999999987766543222 2454444434333
No 228
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.25 E-value=1.9 Score=50.30 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeC
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAP 494 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P 494 (1377)
+.+-+|.-++|.|||..|-++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 3456788999999999998877766543222 235554443
No 229
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.17 E-value=0.63 Score=50.03 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=26.1
Q ss_pred CeeEEEEechhhhhhhhh--h--hccceeEEEEcccccccC
Q 000642 542 GFHILITSYQLLVADEKY--F--RRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 542 ~f~VvItSYe~l~~d~~~--l--~~~~w~~VIlDEAH~iKN 578 (1377)
..+|||++|..+....-. + ...+-.+|||||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 458999999999876322 2 123557899999999954
No 230
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.01 E-value=4 Score=49.04 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=35.9
Q ss_pred CchhccCcchhHHHHHHHHH-HHHhc--CCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 430 PELFKGSLKEYQLKGLQWLV-NCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 430 P~~l~~~Lr~YQlkGL~WL~-~ly~~--g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
|..|.| |+.|++.+.-.+ ..... +.+.+|.-..|.|||..+-+++.++.+.
T Consensus 14 p~~l~g--Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 14 PDRIVH--RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCCC--cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444433 888888875443 33322 2467889999999999999999888654
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.01 E-value=4.8 Score=47.67 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 442 LKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 442 lkGL~WL~~ly~~g~--nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
-..+.+|......+. +-+|.-+.|.|||..+.++...+..
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334555655555555 5789999999999999999887764
No 232
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.01 E-value=1.7 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
-++.-..|.|||..+.++...+.+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 46889999999999999988887653
No 233
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.00 E-value=8.2 Score=47.29 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCC--C-EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--n-GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
|...+.-|.+...+|. . -|+.-..|.|||..+.++...+.+.
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444555555542 2 4688999999999999999888764
No 234
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.95 E-value=5.7 Score=53.16 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=48.7
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH--HHHHHH
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN--WADEIS 506 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n--W~~Ei~ 506 (1377)
-..|+-|.+-++-+...+..+...|+--.+|.|||+--+.-+. .... ..+++|.||...+.+ |.+++.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l--~~~~--~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLL--AQSD--QRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHH--HhcC--CCcEEEEeCcHHHHHHHHHHHHH
Confidence 3689999998888888888787777888999999987544322 2111 258999999766554 445554
No 235
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.79 E-value=1.2 Score=55.19 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=59.4
Q ss_pred eCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHHHHHHHH----H-HHCCCCeeEeecCChhhhHHHhhccCccc
Q 000642 462 DEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLNNWADEI----S-RFCPDLKTLPYWGGLQERMVLRKNINPKR 535 (1377)
Q Consensus 462 DEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~nW~~Ei----~-kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~ 535 (1377)
..+|.|||+++.++|.|+... | .+.||..|- ++++..-..-| . ++. --.++.|.|...+-+.+..+ +
T Consensus 4 matgsgkt~~ma~lil~~y~k-g-yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkvn~f-s--- 76 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKK-G-YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKVNNF-S--- 76 (812)
T ss_pred cccCCChhhHHHHHHHHHHHh-c-hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeeeccc-C---
Confidence 458999999999999999865 3 367887776 56655433322 1 111 01122233332221111111 1
Q ss_pred ccccCCCeeEEEEechhhhhhhhh-------hhcc--ceeEEEEccccccc
Q 000642 536 LYRRDAGFHILITSYQLLVADEKY-------FRRV--KWQYMVLDEAQAIK 577 (1377)
Q Consensus 536 l~~~~~~f~VvItSYe~l~~d~~~-------l~~~--~w~~VIlDEAH~iK 577 (1377)
.......|+.||.+.+.++..- +... .--+++-||||+|-
T Consensus 77 --ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 --EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred --ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 1234567999999988776321 1111 11245669999993
No 236
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.65 E-value=5.3 Score=52.71 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhh-CCCeEEEEeccchHHHHHHHHHHhCC-------CcEEEecCCCCHHHHHHHHHHhccC--CCceEEE
Q 000642 1059 QTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRK-------YRYLRLDGSSTIMDRRDMVRDFQHR--SDIFVFL 1128 (1377)
Q Consensus 1059 ~~L~~LL~~Lk~-~ghKVLIFSQ~t~mLDiLee~L~~~g-------~~y~rLDGstk~edR~~~V~~Fq~~--~di~VfL 1128 (1377)
..|..+|.++.. -.+.||||+..-..|+.+.+.+...| .+.+.+-|... .++..+++.|... ..-.-+|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEE
Confidence 445555555443 35689999888888887777765433 23344444422 6889999999752 1112246
Q ss_pred Eec--cccccccCcCc--CCEEEEeCCCC-Ch
Q 000642 1129 LST--RAGGLGINLTA--ADTVIFYESDW-NP 1155 (1377)
Q Consensus 1129 LST--rAGGlGINLTa--AdtVIfyDsdW-NP 1155 (1377)
+++ ...++|||+.+ +..||++-.|. ||
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 666 56789999986 78999998877 55
No 237
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=84.95 E-value=2.3 Score=50.68 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=34.7
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
++|+|....+-++..-.-+..-++.-..|.|||..+.++...+.+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888876665411111235788999999999999999998754
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=84.93 E-value=12 Score=39.85 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhccc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKNI 485 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~~i 485 (1377)
|.+.+..|.+++.+|. .. |+.-..|.||+-.+.+++..+.+....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5566777777777663 33 788889999999999999999876544
No 239
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.79 E-value=6.5 Score=50.63 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 445 LQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 445 L~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
+.-|.+.+..|. .+ ||.-..|.|||..+-++...+.+..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~ 65 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET 65 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 444444444443 34 8999999999999999888886643
No 240
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=84.55 E-value=3.7 Score=37.49 Aligned_cols=37 Identities=35% Similarity=0.484 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000642 254 IRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALK 290 (1377)
Q Consensus 254 ~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~~k 290 (1377)
.+|+++++.+..||...++++....++++++.+.+++
T Consensus 36 ~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~ 72 (73)
T PF07529_consen 36 ARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALK 72 (73)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 5677888899999999999988887777777766554
No 241
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.13 E-value=2.8 Score=53.23 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.|-..++.|.+.+..+. .+ |+.-..|.|||..+-.|...+.+..
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCET 66 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 44455555555555443 34 7999999999999999988887643
No 242
>PRK08181 transposase; Validated
Probab=84.10 E-value=9.4 Score=44.27 Aligned_cols=46 Identities=24% Similarity=0.148 Sum_probs=33.8
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+-.-|...+.++-...+.+.|-+|.-..|.|||--+.|+..++...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 3446666665443334568889999999999999999988777653
No 243
>PRK14974 cell division protein FtsY; Provisional
Probab=83.88 E-value=9.8 Score=45.54 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=30.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc----ccHHHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWADEISR 507 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~----Sll~nW~~Ei~k 507 (1377)
.++.-..|.|||-.+-.+..++... + .++++|+.- ....||......
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~-g--~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN-G--FSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-C--CeEEEecCCcCcHHHHHHHHHHHHH
Confidence 4567799999999887777766543 2 355666542 345677655544
No 244
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.87 E-value=6.2 Score=45.15 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhcCC-CEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 440 YQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~-nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
.+..+++.+......+. ..+|.-+.|.|||..+-.++..+.
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44456655554444443 468899999999988887766554
No 245
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.80 E-value=2.6 Score=53.00 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+.+..|. ..||.-+.|.|||-.+-.+...+-+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4444455555444443 578999999999999999988887653
No 246
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.65 E-value=25 Score=41.25 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcC--CCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 443 KGLQWLVNCYEQG--LNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 443 kGL~WL~~ly~~g--~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
..+..+......+ .+.+|.-+.|.|||..+-++...+..
T Consensus 24 ~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 24 EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444444443333 24799999999999999888877653
No 247
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.59 E-value=4.1 Score=48.64 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=75.6
Q ss_pred CcchhHHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDL 512 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l 512 (1377)
.+...|-..+.-|...+..|. +. ++.-+.|.|||-.+.++...+.+.....+. |-........-.....|++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCE
Confidence 344566667777777776553 34 899999999999999999988765422111 3233333333334455776
Q ss_pred eeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhh----ccceeEEEEcccccccCch-hHHHHHH
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFR----RVKWQYMVLDEAQAIKSSN-SIRWKTL 587 (1377)
Q Consensus 513 ~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~----~~~w~~VIlDEAH~iKN~~-S~r~kal 587 (1377)
.++...|..-.. +.++.-...+. .-.|.++||||||++.... ....+.+
T Consensus 81 ~~i~~~~~~i~i--------------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~L 134 (329)
T PRK08058 81 HLVAPDGQSIKK--------------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFL 134 (329)
T ss_pred EEeccccccCCH--------------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHh
Confidence 666554422111 11211111111 1268899999999995422 2222333
Q ss_pred HhccCCceEEeecC
Q 000642 588 LSFNCRNRLLLTGT 601 (1377)
Q Consensus 588 ~~l~~~~rLlLTGT 601 (1377)
-.-...-.++|+.+
T Consensus 135 EEPp~~~~~Il~t~ 148 (329)
T PRK08058 135 EEPSGGTTAILLTE 148 (329)
T ss_pred cCCCCCceEEEEeC
Confidence 33344555666655
No 248
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=83.42 E-value=5.5 Score=50.49 Aligned_cols=153 Identities=21% Similarity=0.255 Sum_probs=79.1
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-----HHHHHHHHHHHCCC
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-----LNNWADEISRFCPD 511 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-----l~nW~~Ei~kf~p~ 511 (1377)
|==||.++ -++...+...-.|+.-|+|.|||-|.==+|..--- ...|.+-|.=|--+ -.-=..|..--. +
T Consensus 50 LPI~~~r~--~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~l-G 124 (674)
T KOG0922|consen 50 LPIYKYRD--QILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQL-G 124 (674)
T ss_pred CCHHHHHH--HHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc--ccCCcEEeecCchHHHHHHHHHHHHHhCCCc-C
Confidence 33355554 24444555667899999999999998765533211 11234334446332 222223332111 1
Q ss_pred CeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhh-hccceeEEEEcccccccCchhHHHHHHHhc
Q 000642 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYF-RRVKWQYMVLDEAQAIKSSNSIRWKTLLSF 590 (1377)
Q Consensus 512 l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l-~~~~w~~VIlDEAH~iKN~~S~r~kal~~l 590 (1377)
-. +-|.- .|-+ .....-.|...|=+++.++.-.= .--++.+|||||||. .|..+-.|+.+
T Consensus 125 ~~-VGY~I---------RFed-----~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGl 185 (674)
T KOG0922|consen 125 EE-VGYTI---------RFED-----STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGL 185 (674)
T ss_pred ce-eeeEE---------Eecc-----cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhh----hhhHHHHHHHH
Confidence 11 11111 0000 00122346667777776653210 012689999999995 44444444433
Q ss_pred -------cCC-ceEEeecCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Q 000642 591 -------NCR-NRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSK 634 (1377)
Q Consensus 591 -------~~~-~rLlLTGTPIQNsm~ELwsLL~FL~P~lFds~~eF~ewFsk 634 (1377)
+.. +.+++|||- +.+.|.++|..
T Consensus 186 LKki~~~R~~LklIimSATl---------------------da~kfS~yF~~ 216 (674)
T KOG0922|consen 186 LKKILKKRPDLKLIIMSATL---------------------DAEKFSEYFNN 216 (674)
T ss_pred HHHHHhcCCCceEEEEeeee---------------------cHHHHHHHhcC
Confidence 233 568889994 46678888876
No 249
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=83.42 E-value=7 Score=45.72 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHHhcC-----CCEEEEeCCCCcHHHHHHHHHHHHHHhcccC---CcEEEE-eC-cccHHHHHHHHH-
Q 000642 438 KEYQLKGLQWLVNCYEQG-----LNGILADEMGLGKTIQAMAFLAHLAEEKNIW---GPFLVV-AP-ASVLNNWADEIS- 506 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly~~g-----~nGILADEMGLGKTIQsIAlLa~L~e~~~i~---gp~LIV-~P-~Sll~nW~~Ei~- 506 (1377)
+|-=.++|.-|..+++.. .|-+|.-+.|.|||..+=-|........+.. -|+|+| +| .....-....|-
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 344456677777777643 2457889999999986654443222211111 154444 44 333444444442
Q ss_pred HHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchh-HHHH
Q 000642 507 RFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNS-IRWK 585 (1377)
Q Consensus 507 kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S-~r~k 585 (1377)
.+. .+|.... .....-......|..+.-.++||||.|++-..+. ++-.
T Consensus 119 ~lg-----aP~~~~~--------------------------~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~ 167 (302)
T PF05621_consen 119 ALG-----APYRPRD--------------------------RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE 167 (302)
T ss_pred HhC-----cccCCCC--------------------------CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH
Confidence 221 1111110 0111112234568888999999999999744333 3222
Q ss_pred H---HHhc--cCCceEEeecCC
Q 000642 586 T---LLSF--NCRNRLLLTGTP 602 (1377)
Q Consensus 586 a---l~~l--~~~~rLlLTGTP 602 (1377)
. ++.+ ..+--+++.||+
T Consensus 168 ~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 168 FLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHhhccCCCeEEeccH
Confidence 2 2223 233346677775
No 250
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.19 E-value=9.7 Score=46.45 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=70.3
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcc-cCCcEEEEeCcc--cHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCc
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPAS--VLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINP 533 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~-i~gp~LIV~P~S--ll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~ 533 (1377)
.-++.-..|.|||-++.-+.+++..... ....+.+|+=-. .-..|+ +..|+-.+.+-
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvp------------------ 235 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIP------------------ 235 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcc------------------
Confidence 3467778999999988777777664321 113555555432 112232 44443211111
Q ss_pred ccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhH---HHHHHHhcc--CCceEEeecCCCCCCHH
Q 000642 534 KRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSI---RWKTLLSFN--CRNRLLLTGTPIQNNMA 608 (1377)
Q Consensus 534 k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~---r~kal~~l~--~~~rLlLTGTPIQNsm~ 608 (1377)
+ .++-+|..+......+ ...++||||++.+.....-. ..+.+.... ....|+|+||==+|.+.
T Consensus 236 ---------v-~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 236 ---------V-KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ---------e-EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 1 1112333332222222 36799999999988543221 112222222 24568999998888888
Q ss_pred HHHHHHHhhcC
Q 000642 609 ELWALLHFIMP 619 (1377)
Q Consensus 609 ELwsLL~FL~P 619 (1377)
+.+.-...+.+
T Consensus 304 ~~~~~~~~~~~ 314 (388)
T PRK12723 304 EIFHQFSPFSY 314 (388)
T ss_pred HHHHHhcCCCC
Confidence 77665554433
No 251
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.01 E-value=7.6 Score=49.42 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCC---EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGLN---GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~n---GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+.+..|.. -|+.-+.|.|||..+-.+...+.+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~ 66 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT 66 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 33344445555555432 37899999999999999998887643
No 252
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.94 E-value=3.7 Score=53.09 Aligned_cols=43 Identities=21% Similarity=-0.004 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhcCCC---EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 440 YQLKGLQWLVNCYEQGLN---GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~n---GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
.|...+..|...+..|.- -|+.-+.|.|||..+.++...|.+.
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 345555566666666543 3889999999999999999998764
No 253
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=82.69 E-value=3 Score=51.16 Aligned_cols=115 Identities=30% Similarity=0.498 Sum_probs=74.3
Q ss_pred hcCCCEEEEeCCCCcHHH----HHHHHHHHHH---H-hcccCCc-EEEEeCcccHH-HHHHHHHHHCC--CCeeEeecCC
Q 000642 453 EQGLNGILADEMGLGKTI----QAMAFLAHLA---E-EKNIWGP-FLVVAPASVLN-NWADEISRFCP--DLKTLPYWGG 520 (1377)
Q Consensus 453 ~~g~nGILADEMGLGKTI----QsIAlLa~L~---e-~~~i~gp-~LIV~P~Sll~-nW~~Ei~kf~p--~l~vl~y~Gs 520 (1377)
.|..+-|.--|.|.|||. -.+..|..+. + .+++.|| .+|++|.--|. |-+.|-.+|.- +++++...|.
T Consensus 280 lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg 359 (673)
T KOG0333|consen 280 LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGG 359 (673)
T ss_pred hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecc
Confidence 456678999999999992 2333333333 1 2455566 47778976655 57777788763 4566666554
Q ss_pred hh-hhHHHhhccCcccccccCCCeeEEEEechhhhh--hhhhhhccceeEEEEccccccc
Q 000642 521 LQ-ERMVLRKNINPKRLYRRDAGFHILITSYQLLVA--DEKYFRRVKWQYMVLDEAQAIK 577 (1377)
Q Consensus 521 ~~-~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~--d~~~l~~~~w~~VIlDEAH~iK 577 (1377)
.. +-+ . +.-....+|+|.|..-+.. ...||-.-...|||+|||.++-
T Consensus 360 ~s~EEq----~------fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 360 LSFEEQ----G------FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred cchhhh----h------hhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 32 111 0 1112467899999988754 3556666678999999999984
No 254
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=82.44 E-value=4.4 Score=52.85 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=58.4
Q ss_pred cCcchhHHHHHHHHHHHHhcCC-CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-ccHHHHHHHHHHHCCCC
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGL-NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDL 512 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~-nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sll~nW~~Ei~kf~p~l 512 (1377)
-.|.++|...+.-+.+....|. +.+|.--.|.|||....+++..+ .+|+|||||. ....+|.+++..|+|+.
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~------~r~vLIVt~~~~~A~~l~~dL~~~~~~~ 84 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARL------QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhcCCC
Confidence 3578899999988877665553 45677788999999876655432 2699999996 45778999999999876
Q ss_pred eeEee
Q 000642 513 KTLPY 517 (1377)
Q Consensus 513 ~vl~y 517 (1377)
.|..|
T Consensus 85 ~v~~f 89 (652)
T PRK05298 85 AVEYF 89 (652)
T ss_pred eEEEe
Confidence 56544
No 255
>PRK08116 hypothetical protein; Validated
Probab=82.30 E-value=10 Score=43.85 Aligned_cols=42 Identities=29% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 499 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~ 499 (1377)
+.+-+|.-.+|.|||.-+.|+..++... + .+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~-~--~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK-G--VPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc-C--CeEEEEEHHHHHH
Confidence 3456899999999999999999988765 3 3555554333333
No 256
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.05 E-value=2.4 Score=45.61 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=37.7
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
+++-++|.|||+-++.++...+.. + .++++|.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~-g--~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLAR-G--EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHC-C--CcEEEEECCCCHHHHHHHHHHc
Confidence 678899999999999999887743 2 5889998877777777766655
No 257
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=81.86 E-value=7.4 Score=40.60 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.1
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCc--CCEEEEeCCCC
Q 000642 1098 RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTA--ADTVIFYESDW 1153 (1377)
Q Consensus 1098 ~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTa--AdtVIfyDsdW 1153 (1377)
+.+.+-|. ...+...+++.|....+. .+|+++....+||++.. +..||+.-.|+
T Consensus 24 ~~i~~e~~-~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQGE-DGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeCC-ChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44455453 334678899999874432 34777777999999986 67888887665
No 258
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.61 E-value=11 Score=44.76 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=41.0
Q ss_pred cCcchhHHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
..++|+|.....-+...+.+|. .-++.-..|+||+..+.+|...+.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 3589999999988888877664 246889999999999999999998754
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=81.22 E-value=5.9 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
||.-..|.|||..+..|...|.+..
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~~ 65 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCVE 65 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCccc
Confidence 7899999999999999999988754
No 260
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=81.13 E-value=3.1 Score=53.11 Aligned_cols=168 Identities=18% Similarity=0.247 Sum_probs=101.8
Q ss_pred CchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcc-cHHHHHHH-HHH
Q 000642 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS-VLNNWADE-ISR 507 (1377)
Q Consensus 430 P~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~S-ll~nW~~E-i~k 507 (1377)
|-.......|||.+-++-|..-. -..-.+.-..-+|||...+.+|.+..... .+|+|+|.|.- ....|..+ |.-
T Consensus 10 pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 10 PGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHH
Confidence 44567789999999987665311 12346777888999999999998887654 47999999954 46667754 332
Q ss_pred ---HCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEccccccc-------
Q 000642 508 ---FCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIK------- 577 (1377)
Q Consensus 508 ---f~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iK------- 577 (1377)
-+|.++-.+.... + +..-+ ..+......-.+.++.... ..-|.....+++|+||...+-
T Consensus 86 mi~~sp~l~~~~~~~~---~---~~~~~-t~~~k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eG 154 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSK---S---RDSGN-TILYKRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEG 154 (557)
T ss_pred HHHhCHHHHHHhCchh---h---cccCC-chhheecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCC
Confidence 2333332211100 0 00000 0011111222344444433 345777889999999999983
Q ss_pred CchhHHHHHHHhccCCceEEeecCCCCCCHHHHHH
Q 000642 578 SSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWA 612 (1377)
Q Consensus 578 N~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELws 612 (1377)
++-+...+-...+....++++..||......-++.
T Consensus 155 dp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~ 189 (557)
T PF05876_consen 155 DPVELAEKRTKTFGSNRKILRISTPTIEGTSRIER 189 (557)
T ss_pred CHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHH
Confidence 23444445555667788999999998775444443
No 261
>PF13245 AAA_19: Part of AAA domain
Probab=81.10 E-value=3.8 Score=38.02 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=33.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh--cccCCcEEEEeCcccHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE--KNIWGPFLVVAPASVLNN 500 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~--~~i~gp~LIV~P~Sll~n 500 (1377)
.++--.+|.|||-..+..++++... .+ ..++|||+|....-+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHH
Confidence 4567899999999999999999853 33 568999999765444
No 262
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.88 E-value=14 Score=47.02 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCC--E-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 444 GLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 444 GL~WL~~ly~~g~n--G-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.+..|......|.- . ++.-+.|.|||-.+-++...+.+..
T Consensus 22 v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 33444444444432 2 7899999999999999998887643
No 263
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.86 E-value=12 Score=44.88 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 443 KGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 443 kGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+.++-|......|. .-+|.-+.|.|||-.+-++...+.+.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 21 HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 33334444444443 23789999999999999998888754
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=80.38 E-value=12 Score=45.32 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHHHH-HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCCh
Q 000642 443 KGLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGL 521 (1377)
Q Consensus 443 kGL~WL~~-ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~ 521 (1377)
.++..++. -...|.-.+|.-++|.|||..++.++..++... +++|.|.-.-...|......++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg------------ 133 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLG------------ 133 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcC------------
Confidence 45555542 111222347889999999999999988887542 57888876544555544433321
Q ss_pred hhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEccccccc
Q 000642 522 QERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIK 577 (1377)
Q Consensus 522 ~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iK 577 (1377)
+.. . .+.+.....+..-...+...+.++||||+.|.+-
T Consensus 134 ---------~~~-------~--~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 134 ---------IST-------E--NLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------CCc-------c--cEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 000 0 1112221122222333455688999999999874
No 265
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.29 E-value=16 Score=45.24 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=36.5
Q ss_pred ceeEEEEcccccccCchhH--HHHHHHh---ccCCceEEeecCCCCCCHHHHHHHHHhhcC
Q 000642 564 KWQYMVLDEAQAIKSSNSI--RWKTLLS---FNCRNRLLLTGTPIQNNMAELWALLHFIMP 619 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~--r~kal~~---l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P 619 (1377)
.+++||||-+-+....... ....+.. ......++|++|+=++.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998765433222 1222222 123557999999988888888877776654
No 266
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=80.27 E-value=11 Score=50.25 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH---HHHHHHHHHCCCCe
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN---NWADEISRFCPDLK 513 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~---nW~~Ei~kf~p~l~ 513 (1377)
.++-|+-|---|. .|-|-=..+|=|||+.|.. -+||..-.+. |-++|-|-..|.. .|..-+..|. ++.
T Consensus 139 ~ydVQLiGgivLh------~G~IAEM~TGEGKTLvatl-p~yLnAL~G~-gVHvVTvNDYLA~RDaewm~p~y~fl-GLt 209 (1025)
T PRK12900 139 PYDVQLIGGIVLH------SGKISEMATGEGKTLVSTL-PTFLNALTGR-GVHVVTVNDYLAQRDKEWMNPVFEFH-GLS 209 (1025)
T ss_pred ccchHHhhhHHhh------cCCccccCCCCCcchHhHH-HHHHHHHcCC-CcEEEeechHhhhhhHHHHHHHHHHh-CCe
Confidence 4666888764442 2557777889999998653 2333322232 5666666666643 6999999987 566
Q ss_pred eEeecCC--hhhhHHHhhccCcccccccCC--CeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHh
Q 000642 514 TLPYWGG--LQERMVLRKNINPKRLYRRDA--GFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 514 vl~y~Gs--~~~rk~lrk~~~~k~l~~~~~--~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~ 589 (1377)
|-+.... ..+|+ ......-.|.-.+ .||.+--. ++.....+-...+.+.||||+..+- -
T Consensus 210 Vg~i~~~~~~~~Rr---~aY~~DItYgTn~EfGFDYLRDn---ma~~~~~~vqR~~~faIVDEvDSvL-----------I 272 (1025)
T PRK12900 210 VGVILNTMRPEERR---EQYLCDITYGTNNEFGFDYLRDN---MAGTPEEMVQRDFYFAIVDEVDSVL-----------I 272 (1025)
T ss_pred eeeeCCCCCHHHHH---HhCCCcceecCCCccccccchhc---cccchhhhhccCCceEEEechhhhh-----------h
Confidence 6443222 22222 1111111122222 23322211 1112222334578999999986552 1
Q ss_pred ccCCceEEeecC
Q 000642 590 FNCRNRLLLTGT 601 (1377)
Q Consensus 590 l~~~~rLlLTGT 601 (1377)
=.++.-|++||.
T Consensus 273 DeARTPLIISgp 284 (1025)
T PRK12900 273 DEARTPLIISGP 284 (1025)
T ss_pred ccccCceEEeCC
Confidence 156778999984
No 267
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=80.12 E-value=7.6 Score=35.80 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000642 253 AIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEA 288 (1377)
Q Consensus 253 ~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~ 288 (1377)
.++|+++++.|+.||...++++....+|.|++.+.+
T Consensus 35 ~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~ 70 (73)
T smart00573 35 IAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRK 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998876556666655443
No 268
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.09 E-value=12 Score=47.97 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+....|. +. |+.-..|.|||-.+.+|...+.+.+
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 63 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ 63 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 5555555666555543 23 7899999999999999999888754
No 269
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.06 E-value=6.6 Score=49.61 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCE---EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGLNG---ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nG---ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|...+..|.+....+.-+ ++.-..|.|||..+.++..++.+.+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 444555565555555433 8999999999999999998887643
No 270
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=79.13 E-value=11 Score=49.02 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+.+..|. .+ ||.-..|.|||..+.+|...|.+..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~ 66 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN 66 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccC
Confidence 3344444444444443 33 8899999999999999988887653
No 271
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=79.09 E-value=11 Score=45.83 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 440 YQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
-|-....-|.+.+..|. .-++.-..|.|||..+.+|..++.+..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 36666777777777653 247889999999999999999998754
No 272
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.83 E-value=5.4 Score=51.39 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCC--E-EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 441 QLKGLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~n--G-ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
|-..+..|.+.+.+|.- . |+.-..|.|||-.+..|...|.+.
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 55666677777666542 3 789999999999999998888764
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=78.75 E-value=16 Score=41.63 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=32.2
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccH------HHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL------NNWADEISR 507 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll------~nW~~Ei~k 507 (1377)
-+.+.-++|.|||+.+=++++.+.+. .-..|+.|+.++ .-|..++..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 35677899999999999777777643 233467776543 347766643
No 274
>PRK07952 DNA replication protein DnaC; Validated
Probab=78.71 E-value=20 Score=41.05 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHH---hcC-CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 440 YQLKGLQWLVNCY---EQG-LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 440 YQlkGL~WL~~ly---~~g-~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
.|..++..+...- ..+ .+-+|.-..|.|||-.+.|+..++... + .+++++ .+..|...+..
T Consensus 80 ~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 80 GQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-G--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEE----EHHHHHHHHHH
Confidence 4555555444322 222 245899999999999999999998764 2 244544 35667766653
No 275
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.68 E-value=6.1 Score=50.93 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhcCCCE---EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 440 YQLKGLQWLVNCYEQGLNG---ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~nG---ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
.|-..+.+|.+.+..|.-+ ||.-..|.|||..+.++..++.+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4666667777776666433 889999999999999999888654
No 276
>PRK06893 DNA replication initiation factor; Validated
Probab=78.44 E-value=20 Score=40.45 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=20.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+|.-..|.|||--+.|+..++...
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999988887776543
No 277
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.37 E-value=7.2 Score=48.93 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 443 KGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 443 kGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
..+..|.+.+..|. .-||.-..|.|||-.+..+...+.+.+
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 33444444444442 458899999999999988887777654
No 278
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=78.14 E-value=15 Score=45.78 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=29.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
-+|.-++|+|||--+-|+..++...... ..++.|.+...+......+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHH
Confidence 4689999999999888887777654322 3445444444443344333
No 279
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=78.00 E-value=0.84 Score=60.86 Aligned_cols=144 Identities=29% Similarity=0.378 Sum_probs=128.5
Q ss_pred ccchHHHHHHHHHHHhhC--CCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1054 DSGKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~--ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
-+.|+.....++..++-. -.+||+||||...+|.++..+..+++++.+ +|++ ++-.+.+..|.. |.||||-+
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~-~~~t--~d~~dc~~~fk~---I~clll~~ 1274 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQL-DGET--EDFDDCIICFKS---IDCLLLFV 1274 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhh-ccCC--cchhhhhhhccc---ceEEEEEe
Confidence 367888887777777654 469999999999999999999999999855 4544 367788888876 99999999
Q ss_pred cccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000642 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLV 1203 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~V 1203 (1377)
+.||-|+||+.|-|||..+|--||..+.|||||+|||||++++.|||+|..+||||.|+.....|.+....-
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~~ 1346 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTKS 1346 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998876443
No 280
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.96 E-value=9.1 Score=48.18 Aligned_cols=43 Identities=26% Similarity=0.105 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 440 YQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-|-..+.-|.+....|. ++ ++.-+.|.|||..+-.+...+.+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 44555555666555543 33 679999999999998888887653
No 281
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.75 E-value=7 Score=48.96 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=21.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-||.-.+|.|||..+-++...+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 3899999999999999988877653
No 282
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=77.75 E-value=4.5 Score=54.30 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=73.6
Q ss_pred HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccH-----HHHHHHHHHHCCCCeeEeecCChhhhH
Q 000642 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL-----NNWADEISRFCPDLKTLPYWGGLQERM 525 (1377)
Q Consensus 451 ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll-----~nW~~Ei~kf~p~l~vl~y~Gs~~~rk 525 (1377)
+|+.+-|.+++...|.|||+.|=-.+.. ..+ .+...-|+|...+ +-|..-|.+- .++.++...|...--.
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~~-~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR---PDT-IGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC---Ccc-ceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 4556778999999999999987433332 223 3678889996654 4588888775 5677777777433222
Q ss_pred HHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccC
Q 000642 526 VLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 526 ~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN 578 (1377)
.+ ...-+|+|.|.+....-. +.+. -++.|+||.|.|..
T Consensus 1230 kl------------~~~~~vii~tpe~~d~lq-~iQ~--v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1230 KL------------LQKGQVIISTPEQWDLLQ-SIQQ--VDLFIVDELHLIGG 1267 (1674)
T ss_pred HH------------hhhcceEEechhHHHHHh-hhhh--cceEeeehhhhhcc
Confidence 11 134579999988775542 4443 47899999999975
No 283
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=77.60 E-value=9.1 Score=46.28 Aligned_cols=139 Identities=20% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCcHHHHH-HHHHHHHHHhccc----CCc-EEEEeC-cccHHHHHHHHHH---HCC-CCeeEeecCChhh
Q 000642 455 GLNGILADEMGLGKTIQA-MAFLAHLAEEKNI----WGP-FLVVAP-ASVLNNWADEISR---FCP-DLKTLPYWGGLQE 523 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQs-IAlLa~L~e~~~i----~gp-~LIV~P-~Sll~nW~~Ei~k---f~p-~l~vl~y~Gs~~~ 523 (1377)
|.+-+--.-+|.|||..- |-+|..|...... .+| -+|+|| .-|..|-...|.+ +|+ .++++-...+..+
T Consensus 56 gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sd 135 (569)
T KOG0346|consen 56 GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSD 135 (569)
T ss_pred CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence 445455567999999874 4455544443222 233 588899 4566666666654 454 4444433322221
Q ss_pred hHHHhhccCcccccccCCCeeEEEEechhhhhhhhh---hhccceeEEEEcccccccCchh-HHHHHH-Hhcc-CCceEE
Q 000642 524 RMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY---FRRVKWQYMVLDEAQAIKSSNS-IRWKTL-LSFN-CRNRLL 597 (1377)
Q Consensus 524 rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~---l~~~~w~~VIlDEAH~iKN~~S-~r~kal-~~l~-~~~rLl 597 (1377)
. +.+.. -....||||+|...+...... ...-.-.++|+|||.-+-+..= .-.+.+ ..+. .-..+|
T Consensus 136 s-v~~~~--------L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~L 206 (569)
T KOG0346|consen 136 S-VNSVA--------LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFL 206 (569)
T ss_pred H-HHHHH--------HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhhee
Confidence 1 11111 124568999999988664221 1112457899999998855321 112222 2222 223478
Q ss_pred eecCC
Q 000642 598 LTGTP 602 (1377)
Q Consensus 598 LTGTP 602 (1377)
||||-
T Consensus 207 mSATl 211 (569)
T KOG0346|consen 207 MSATL 211 (569)
T ss_pred ehhhh
Confidence 88883
No 284
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=77.52 E-value=14 Score=47.56 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..++-|.+.+..|. .-||.-..|.|||..+..+...|.+..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 4555555666665553 347888999999999999999887653
No 285
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=77.39 E-value=6.7 Score=46.91 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=40.2
Q ss_pred CcchhHHHHHHHHHHHHhcCCC--E-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLN--G-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~n--G-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.++|+|...-+-|.+.+.+|.- + +++-..|+||+..+.+|..++.+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4688999998888888877642 3 6889999999999999999998754
No 286
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=76.75 E-value=13 Score=44.43 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 437 LKEYQLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
++|+|...-.-|.+.+.+|. .+ ++.-..|+||+..+.+|..++.+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888888888887764 34 5788999999999999999998754
No 287
>PRK05642 DNA replication initiation factor; Validated
Probab=76.60 E-value=27 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=18.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~ 480 (1377)
-+|.-..|+|||--+-|+..++.
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999988777655554
No 288
>PRK06835 DNA replication protein DnaC; Validated
Probab=76.44 E-value=22 Score=42.47 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=34.3
Q ss_pred CcchhHHHHHHHHH----HHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 436 SLKEYQLKGLQWLV----NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~----~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
..++++..++.++. +.-..+.|-+|.-.+|.|||--+.|+...+...
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 56777777776443 322345666888899999999999988888754
No 289
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=76.19 E-value=11 Score=46.20 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-+|.-..|+|||..+-++..++.+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3689999999999999988888765
No 290
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=76.19 E-value=11 Score=46.83 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=29.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
.+|.-..|+|||.-+-++..++...+. ...++.|.....+..+...+
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHH
Confidence 478999999999999998888776432 12344443333333343333
No 291
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=76.17 E-value=22 Score=41.91 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCchhcc-CcchhHHHHHHHHHHHHhcC--CCEEE-EeCCCCcHHHHHHHHHHHH
Q 000642 429 TPELFKG-SLKEYQLKGLQWLVNCYEQG--LNGIL-ADEMGLGKTIQAMAFLAHL 479 (1377)
Q Consensus 429 qP~~l~~-~Lr~YQlkGL~WL~~ly~~g--~nGIL-ADEMGLGKTIQsIAlLa~L 479 (1377)
.|..|.- ...+...+.+...+. .| .+.+| .-+.|.|||-.+-++...+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~---~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVK---KGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHh---cCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444432 344555454443333 23 24555 8999999999888775543
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.11 E-value=19 Score=43.94 Aligned_cols=122 Identities=14% Similarity=0.225 Sum_probs=64.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC----cccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP----ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPK 534 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P----~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k 534 (1377)
.|.-..|.|||..+..+...+... + ..+++|.- ...+.||..-.... +
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~-G--kkVglI~aDt~RiaAvEQLk~yae~l--g----------------------- 296 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGK-K--KTVGFITTDHSRIGTVQQLQDYVKTI--G----------------------- 296 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc-C--CcEEEEecCCcchHHHHHHHHHhhhc--C-----------------------
Confidence 466679999999998888777643 2 35566554 22455665422211 1
Q ss_pred cccccCCCeeEE-EEechhhhhhhhhhhc-cceeEEEEcccccccCchhHHHHHHHhc---cCC--ceEEeecCCCCCCH
Q 000642 535 RLYRRDAGFHIL-ITSYQLLVADEKYFRR-VKWQYMVLDEAQAIKSSNSIRWKTLLSF---NCR--NRLLLTGTPIQNNM 607 (1377)
Q Consensus 535 ~l~~~~~~f~Vv-ItSYe~l~~d~~~l~~-~~w~~VIlDEAH~iKN~~S~r~kal~~l---~~~--~rLlLTGTPIQNsm 607 (1377)
+.++ +.+...+......+.. .++++||||-+-+.-+.... ...+..+ ... ..|.|++|=-++.+
T Consensus 297 --------ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~l-m~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 297 --------FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASET-VEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred --------CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHH-HHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 1122 1222333333333432 35899999988775433222 2222221 222 23557777666666
Q ss_pred HHHHHHHHhh
Q 000642 608 AELWALLHFI 617 (1377)
Q Consensus 608 ~ELwsLL~FL 617 (1377)
.+....++.+
T Consensus 368 ~~i~~~F~~~ 377 (436)
T PRK11889 368 IEIITNFKDI 377 (436)
T ss_pred HHHHHHhcCC
Confidence 6655554443
No 293
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=75.71 E-value=11 Score=39.41 Aligned_cols=55 Identities=13% Similarity=0.292 Sum_probs=35.6
Q ss_pred cEEEecCCCCHHHHHHHHHHhccCCCc-eEEEEeccc--cccccCcCc--CCEEEEeCCCC
Q 000642 1098 RYLRLDGSSTIMDRRDMVRDFQHRSDI-FVFLLSTRA--GGLGINLTA--ADTVIFYESDW 1153 (1377)
Q Consensus 1098 ~y~rLDGstk~edR~~~V~~Fq~~~di-~VfLLSTrA--GGlGINLTa--AdtVIfyDsdW 1153 (1377)
+.+.+.|... .+...+++.|....+. --+|+++-. .++||||.. +..||+.-.|+
T Consensus 21 ~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 21 KPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred ceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3445555432 3557899999874320 123555544 799999986 67899887764
No 294
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=74.96 E-value=17 Score=48.25 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH-HHHHHHHHCCCCe
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN-WADEISRFCPDLK 513 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n-W~~Ei~kf~p~l~ 513 (1377)
..|-+-|..++.-+.. .+.-.||-.-.|.|||-..-+++..+.. .+ ..+++++|...... +.... +..
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~-~g--~~V~~~ApTg~Aa~~L~~~~-----g~~ 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA-AG--YRVIGAALSGKAAEGLQAES-----GIE 419 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh-CC--CeEEEEeCcHHHHHHHHhcc-----CCc
Confidence 3588999999987653 2234689999999999887776655543 23 46888899776443 33221 100
Q ss_pred eEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHh-ccC
Q 000642 514 TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS-FNC 592 (1377)
Q Consensus 514 vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~-l~~ 592 (1377)
....+ + .+ ..| ..... .-...++||||||..+.... ....+.. ...
T Consensus 420 a~Ti~-----~-~~-~~~----------------------~~~~~--~~~~~~llIvDEasMv~~~~--~~~Ll~~~~~~ 466 (744)
T TIGR02768 420 SRTLA-----S-LE-YAW----------------------ANGRD--LLSDKDVLVIDEAGMVGSRQ--MARVLKEAEEA 466 (744)
T ss_pred eeeHH-----H-HH-hhh----------------------ccCcc--cCCCCcEEEEECcccCCHHH--HHHHHHHHHhc
Confidence 00000 0 00 000 00000 11367899999999995432 2333332 246
Q ss_pred CceEEeecCCCC
Q 000642 593 RNRLLLTGTPIQ 604 (1377)
Q Consensus 593 ~~rLlLTGTPIQ 604 (1377)
..+++|.|=|-|
T Consensus 467 ~~kliLVGD~~Q 478 (744)
T TIGR02768 467 GAKVVLVGDPEQ 478 (744)
T ss_pred CCEEEEECChHH
Confidence 778999997655
No 295
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=74.93 E-value=5.9 Score=44.63 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
-.||+-|.+-+..|.+- ..|.|.++=--||-|||-..+=+++.+...+. .=+-||||++++.+=.+-+..-
T Consensus 22 iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred ceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHH
Confidence 36999999999988864 46789999999999999988877776654332 3567889999999988887543
No 296
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=74.64 E-value=51 Score=42.32 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000642 238 VKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAEALKREQ 293 (1377)
Q Consensus 238 ~~~~~~~~~~~~k~~~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~~~k~~~ 293 (1377)
+|+-..-.+|-.+-.|.|.=+..|.|..-=||.-||+--.=||-||+..+.+||.|
T Consensus 376 akk~s~lC~REarr~~~rs~K~~rt~~~rakr~~Rem~~fwKk~er~~rd~rKK~E 431 (1185)
T KOG0388|consen 376 AKKTSILCAREARRWQSRSYKTSRTNPIRAKRIYREMYGFWKKNERNMRDLRKKAE 431 (1185)
T ss_pred hHHHHHHHHHHHHHhhhccccCcccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444455566666677777778888888888888988888999988887776643
No 297
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.57 E-value=18 Score=45.87 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=70.7
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~-g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS 1130 (1377)
.+.|||-.....++......|.+|||-+.......-+.+.|..+ +..+..++|.++..+|.+...+-.. ++..| ++.
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~I-VVG 82 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILV-VIG 82 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEC
Confidence 47899999998888888888999999999887777777777543 7789999999999998887666554 44555 666
Q ss_pred ccccccccCcCcCCEEEEeC
Q 000642 1131 TRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyD 1150 (1377)
|+++ +=+-+..-+.||+=|
T Consensus 83 Trsa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred ChHH-HcCcccCCCEEEEEC
Confidence 7653 223344555666544
No 298
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.89 E-value=31 Score=44.60 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 445 LQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 445 L~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+..|.+.+.+|. .-|+.-..|.|||..+..|...+.+.
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 444555554442 34679999999999999999888764
No 299
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=73.74 E-value=35 Score=41.50 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCchhccCcchhHHHHHH-HHHHHHh--cCCCEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 429 TPELFKGSLKEYQLKGLQ-WLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 429 qP~~l~~~Lr~YQlkGL~-WL~~ly~--~g~nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.|..|.| |+-|++-+. ++..... .+.+.+|.-..|.|||..+-.++..+....
T Consensus 28 ~P~~l~~--Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 28 VPENLPH--REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred cCCCCCC--HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4544432 555555553 3333332 335689999999999999999998887654
No 300
>PRK08727 hypothetical protein; Validated
Probab=73.71 E-value=15 Score=41.45 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-+|.-..|.|||--+.|+...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999999988887776543
No 301
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=73.66 E-value=13 Score=47.86 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=63.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHh-cccCCcEEEEeC-cccHHHHHHHH----HHHCCCCeeEeecCChhhhHHHhhccC
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEE-KNIWGPFLVVAP-ASVLNNWADEI----SRFCPDLKTLPYWGGLQERMVLRKNIN 532 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~-~~i~gp~LIV~P-~Sll~nW~~Ei----~kf~p~l~vl~y~Gs~~~rk~lrk~~~ 532 (1377)
+..=.==-|||-...++|+.++.. .++ .+++++| .++...--+|+ ++|+|...+-...|.
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~~Gi--~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe------------ 323 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATFRGI--KIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE------------ 323 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhCCCC--EEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc------------
Confidence 333345569999888888766644 343 7888888 45555555555 446554333222221
Q ss_pred cccccccCCC-eeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc---cCCceEEeecC
Q 000642 533 PKRLYRRDAG-FHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF---NCRNRLLLTGT 601 (1377)
Q Consensus 533 ~k~l~~~~~~-f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l---~~~~rLlLTGT 601 (1377)
+-.+.-+... -.+...| ......++...++++||||||.|+.. .+.+++-+ .....|.+|-|
T Consensus 324 ~I~i~f~nG~kstI~FaS----arntNsiRGqtfDLLIVDEAqFIk~~---al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 324 TISFSFPDGSRSTIVFAS----SHNTNGIRGQDFNLLFVDEANFIRPD---AVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred EEEEEecCCCccEEEEEe----ccCCCCccCCcccEEEEechhhCCHH---HHHHHHHHHhccCccEEEEecC
Confidence 0000000011 1121110 12334566678999999999999763 23333322 33444555544
No 302
>PRK06921 hypothetical protein; Provisional
Probab=73.56 E-value=23 Score=40.98 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=24.4
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
.+.+-+|.-.+|.|||-.+.|++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 35567899999999999999998888764
No 303
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=73.53 E-value=8 Score=49.77 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=57.9
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHH--HHHh-cccCCcEEEEeCccc-----HHHHHHHHHHHCCCCee-EeecCChhhh
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAH--LAEE-KNIWGPFLVVAPASV-----LNNWADEISRFCPDLKT-LPYWGGLQER 524 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~--L~e~-~~i~gp~LIV~P~Sl-----l~nW~~Ei~kf~p~l~v-l~y~Gs~~~r 524 (1377)
.+.-.|+|-|+|.|||-|.=-||.. ++.. ....|-+=|--|--+ ..--..|+..+...... +.|.|+.
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti--- 346 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTI--- 346 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecccc---
Confidence 4445899999999999998877743 1111 111122333345322 12233455443222222 2233321
Q ss_pred HHHhhccCcccccccCCCeeEEEEechhhhhhhh-hhhccceeEEEEcccccc
Q 000642 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVADEK-YFRRVKWQYMVLDEAQAI 576 (1377)
Q Consensus 525 k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~-~l~~~~w~~VIlDEAH~i 576 (1377)
...-.|-.+|-+.+.++.. .|.-.++..|||||||.=
T Consensus 347 ---------------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER 384 (1172)
T KOG0926|consen 347 ---------------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER 384 (1172)
T ss_pred ---------------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc
Confidence 1223577788888777643 344457899999999963
No 304
>PRK05580 primosome assembly protein PriA; Validated
Probab=72.90 E-value=24 Score=46.48 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=72.0
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~-~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS 1130 (1377)
.+.|||......++......|.+|||-+.-.....-+.+.|.. -|.+...++|+++..+|.+...+... +++.| +++
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~I-VVg 247 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKV-VIG 247 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCE-EEe
Confidence 4789999998888877777789999999988887777777754 38889999999999999887777665 34555 677
Q ss_pred ccccccccCcCcCCEEEEeC
Q 000642 1131 TRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1131 TrAGGlGINLTaAdtVIfyD 1150 (1377)
|+..- =+.+..-..||+=|
T Consensus 248 Trsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred ccHHh-cccccCCCEEEEEC
Confidence 77532 24455566666654
No 305
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=72.81 E-value=20 Score=48.80 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=70.9
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeE
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTL 515 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl 515 (1377)
.|-+-|..++..++. .+.-.+|---.|.|||.+.-++ ..+.+..+ ..+++++|......=..+- .
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~G--~~V~~~ApTGkAA~~L~e~---t------ 410 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVA-REAWEAAG--YEVRGAALSGIAAENLEGG---S------ 410 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHH-HHHHHHcC--CeEEEecCcHHHHHHHhhc---c------
Confidence 588999999987763 1224688889999999875444 44444333 3678888876544222110 0
Q ss_pred eecCChhhhHHHhh---ccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc-c
Q 000642 516 PYWGGLQERMVLRK---NINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF-N 591 (1377)
Q Consensus 516 ~y~Gs~~~rk~lrk---~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l-~ 591 (1377)
|.. -..+.. .|.. ... .-..-+++|||||-.+... ...+.+... .
T Consensus 411 ---Gi~--a~TI~sll~~~~~----------------------~~~--~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~ 459 (988)
T PRK13889 411 ---GIA--SRTIASLEHGWGQ----------------------GRD--LLTSRDVLVIDEAGMVGTR--QLERVLSHAAD 459 (988)
T ss_pred ---Ccc--hhhHHHHHhhhcc----------------------ccc--ccccCcEEEEECcccCCHH--HHHHHHHhhhh
Confidence 100 000111 1100 000 0124579999999998533 233333323 5
Q ss_pred CCceEEeecCCCCC
Q 000642 592 CRNRLLLTGTPIQN 605 (1377)
Q Consensus 592 ~~~rLlLTGTPIQN 605 (1377)
...+++|.|=|-|-
T Consensus 460 ~garvVLVGD~~QL 473 (988)
T PRK13889 460 AGAKVVLVGDPQQL 473 (988)
T ss_pred CCCEEEEECCHHHc
Confidence 67899999998774
No 306
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.75 E-value=5.5 Score=49.68 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHH-HHHHHHHhc----ccCCcEEEEeC-cccHHHHHHHHHHHC--
Q 000642 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMA-FLAHLAEEK----NIWGPFLVVAP-ASVLNNWADEISRFC-- 509 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIA-lLa~L~e~~----~i~gp~LIV~P-~Sll~nW~~Ei~kf~-- 509 (1377)
.|-|..++-.+.+ +.+++-+-..|.|||+-=+. ++.+|.... ...-..+||.| ..|.+|-.+|+.++.
T Consensus 160 t~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~ 235 (593)
T KOG0344|consen 160 TPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSID 235 (593)
T ss_pred Ccccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCC
Confidence 3445555544554 67889999999999765322 344444332 23235799999 677889999999877
Q ss_pred CC--CeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhh----hhccceeEEEEcccccccCc
Q 000642 510 PD--LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKY----FRRVKWQYMVLDEAQAIKSS 579 (1377)
Q Consensus 510 p~--l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~----l~~~~w~~VIlDEAH~iKN~ 579 (1377)
++ +.+.-+.....-.+ +.-......++++|.|...++...+. +.-.....+|+|||..+.++
T Consensus 236 ~~t~~~a~~~~~~~~~~q--------k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 236 EGTSLRAAQFSKPAYPSQ--------KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCCchhhhhcccccchhh--------ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 32 22222211110000 00011234577888888777665432 12224456899999999887
No 307
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=72.62 E-value=21 Score=46.35 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=58.5
Q ss_pred HHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhccC--CCceEEEEecccccccc
Q 000642 1062 DILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHR--SDIFVFLLSTRAGGLGI 1138 (1377)
Q Consensus 1062 ~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~-g~~y~rLDGstk~edR~~~V~~Fq~~--~di~VfLLSTrAGGlGI 1138 (1377)
..++.-+...+.++||-+..-++|..+.+.|..+ .+. +.+-|... .|..++++|..+ ....-.|+.|.+..+||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 3444444444445555554556666666667543 233 33445432 568899999985 12223499999999999
Q ss_pred Cc----------CcCCEEEEeCCCCChh
Q 000642 1139 NL----------TAADTVIFYESDWNPT 1156 (1377)
Q Consensus 1139 NL----------TaAdtVIfyDsdWNPt 1156 (1377)
++ -+...||+.-.|+-|.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcC
Confidence 99 3478899998888773
No 308
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=72.28 E-value=23 Score=38.32 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-+|.-+.|.|||-.+.++...+.+.
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4788999999999999999888764
No 309
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=72.24 E-value=10 Score=49.49 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=54.0
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc-HHHHHHHH
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV-LNNWADEI 505 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl-l~nW~~Ei 505 (1377)
...|+.|...+.-+......|..+|+=-.+|.|||+-.++...+.+...+ .+++|.++... ..|=.++.
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhh
Confidence 46899999999999999999988999999999999999988877776544 46666666553 44444443
No 310
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=72.01 E-value=28 Score=35.70 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~ 495 (1377)
+|.-..|.|||..+..++..+... .++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECC
Confidence 456679999999999998888652 2566666553
No 311
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.71 E-value=15 Score=45.82 Aligned_cols=33 Identities=33% Similarity=0.264 Sum_probs=24.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~ 493 (1377)
.+|.-+.|+|||--+-|+..++... + .+++.|.
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~-~--~~v~yi~ 176 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRES-G--GKILYVR 176 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-C--CCEEEee
Confidence 4688899999999999888887653 2 3444444
No 312
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=71.66 E-value=17 Score=47.40 Aligned_cols=121 Identities=14% Similarity=0.247 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhh---CC---CeEEEEeccchHHHHHHHHHHhC----CCc-EEEecCCCCHHHHHHHHHHhccCCCceE
Q 000642 1058 LQTLDILLKRLRA---EN---HRVLLFAQMTKMLNILEDYMNYR----KYR-YLRLDGSSTIMDRRDMVRDFQHRSDIFV 1126 (1377)
Q Consensus 1058 L~~L~~LL~~Lk~---~g---hKVLIFSQ~t~mLDiLee~L~~~----g~~-y~rLDGstk~edR~~~V~~Fq~~~di~V 1126 (1377)
-..++..|..+.. .| .|.|||+--.+..+.|.+.|... +.+ .+.|+|... .=+..|+.|-.+...-.
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~ 483 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPR 483 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCc
Confidence 3444444444433 34 59999999999999999998654 334 456788654 55667888877433333
Q ss_pred EEEeccccccccCcCcCCEEEEeCCCCChhhhhHhhhchhccC-------CcCc-EEEEEEE
Q 000642 1127 FLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG-------QTKD-VTVYRLI 1180 (1377)
Q Consensus 1127 fLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiG-------Qtk~-VtVYRLI 1180 (1377)
+.+|..-.-.||+...+-.++|+-.--.-+...|-+||.-|+- |.|. .+|+-++
T Consensus 484 IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 484 IAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 4889999999999999999999998889999999999999962 4443 5666554
No 313
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=71.52 E-value=20 Score=47.88 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=73.4
Q ss_pred HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe--Cc----ccHHHHHHHHHHHCCCCeeEeecCChhhh
Q 000642 451 CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PA----SVLNNWADEISRFCPDLKTLPYWGGLQER 524 (1377)
Q Consensus 451 ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~--P~----Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~r 524 (1377)
.+++...-|+.-|+|-|||.|.--+|..-+-..+ +..=||| |- --+.+|...=. ..+-...+-|.-....
T Consensus 184 ~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~VGYqvrl~~- 259 (924)
T KOG0920|consen 184 AIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKER-GESLGEEVGYQVRLES- 259 (924)
T ss_pred HHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHh-ccccCCeeeEEEeeec-
Confidence 3445667899999999999999999877665445 2222444 42 22455544222 2222233333211000
Q ss_pred HHHhhccCcccccccCCCeeEEEEechhhhhhhhhhh-ccceeEEEEcccccccCchhHHHHHHHh---cc-CCceEEee
Q 000642 525 MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFR-RVKWQYMVLDEAQAIKSSNSIRWKTLLS---FN-CRNRLLLT 599 (1377)
Q Consensus 525 k~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~-~~~w~~VIlDEAH~iKN~~S~r~kal~~---l~-~~~rLlLT 599 (1377)
.....-.+..+|+..+.+....-. .-....||+||+|.=--..--..-.++. .+ --+.+|||
T Consensus 260 -------------~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 260 -------------KRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred -------------ccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 001224577888888876543211 1246789999999642222222222222 23 33568999
Q ss_pred cCC
Q 000642 600 GTP 602 (1377)
Q Consensus 600 GTP 602 (1377)
||=
T Consensus 327 AT~ 329 (924)
T KOG0920|consen 327 ATL 329 (924)
T ss_pred eec
Confidence 995
No 314
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.29 E-value=13 Score=42.77 Aligned_cols=65 Identities=28% Similarity=0.384 Sum_probs=47.1
Q ss_pred chhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 438 KEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 438 r~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
.-.++..+.-++..|+++.|-+|--.+|.|||..++|+...+. ..++ +++++.=+.++.+++..+
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~--sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGI--SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC--eEEEEEHHHHHHHHHHHH
Confidence 3445555555555566888999999999999999999999988 5554 667765555666555554
No 315
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=71.25 E-value=11 Score=48.31 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCC--C-EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--n-GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.+.+..|. . -|+.-..|.|||..|.++...+.+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3444455555554442 2 36899999999999999999887654
No 316
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=71.25 E-value=22 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKN 484 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~ 484 (1377)
|+.-..|.|||..+-.|...+.+...
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c~~~ 67 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNCLNP 67 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 67999999999999999888876543
No 317
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.94 E-value=12 Score=48.28 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCC--CE-EEEeCCCCcHHHHHHHHHHHHHHhcc
Q 000642 441 QLKGLQWLVNCYEQGL--NG-ILADEMGLGKTIQAMAFLAHLAEEKN 484 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--nG-ILADEMGLGKTIQsIAlLa~L~e~~~ 484 (1377)
|-..+..|.+....|. .. |+.-+.|.|||-.+.+|..++.+..+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~ 67 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG 67 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC
Confidence 3344445555544442 33 78889999999999999999876543
No 318
>PF13173 AAA_14: AAA domain
Probab=70.30 E-value=25 Score=35.61 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCc
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINP 533 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~ 533 (1377)
++.--+|--..|.|||..+--++..+. ....++.|-=.....+...... +.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-~~------------------------ 51 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-LL------------------------ 51 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-hH------------------------
Q ss_pred ccccccCCCeeEEEEechhhhhhhhhhhcc---ceeEEEEcccccccCchhHHHHHHHhccCCceEEeecC
Q 000642 534 KRLYRRDAGFHILITSYQLLVADEKYFRRV---KWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGT 601 (1377)
Q Consensus 534 k~l~~~~~~f~VvItSYe~l~~d~~~l~~~---~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGT 601 (1377)
.++... .-.+|||||+|++.+.....-..+... ...++++||.
T Consensus 52 ------------------------~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 52 ------------------------EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred ------------------------HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEcc
No 319
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=70.12 E-value=22 Score=46.79 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=65.5
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHH----HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLN----ILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLD----iLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.|||-.+..-.+......|.+|||-+.-..... .+..++...|+++..++|+++..+|...+....+ +++.| +
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~I-v 368 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADI-V 368 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCE-E
Confidence 6799988654444444456889999988765544 4555666668999999999999999999998876 34555 4
Q ss_pred Eeccc-cccccCcCcCCEEEE
Q 000642 1129 LSTRA-GGLGINLTAADTVIF 1148 (1377)
Q Consensus 1129 LSTrA-GGlGINLTaAdtVIf 1148 (1377)
+.|.+ ...++++.....||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 45543 333455666665554
No 320
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.03 E-value=24 Score=41.98 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=39.7
Q ss_pred CcchhHHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 436 SLKEYQLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.++|+|...-.-+...+++|. .-++.-..|+||+-.+.+|..++.+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888888888888877664 247889999999999999999998764
No 321
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=69.94 E-value=21 Score=37.91 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=59.7
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g----~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.++++..+..|+.+....|+||+|++.-..+++.|-++|.... +.+.+..+.- ....-| +
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~--------------~a~~PV-~ 74 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ--------------PEKQPI-Y 74 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC--------------CCCCCE-E
Confidence 66899999999999999999999999999999999999997532 1222222110 123345 4
Q ss_pred EeccccccccCcCcCCEEEEeCCCCCh
Q 000642 1129 LSTRAGGLGINLTAADTVIFYESDWNP 1155 (1377)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIfyDsdWNP 1155 (1377)
|+ .++.+.| .++.+|+++.-+-|
T Consensus 75 L~--~~~~~p~--~~~vLiNL~~~~~~ 97 (154)
T PRK06646 75 IT--DELQNPN--NASVLVIISPTDIG 97 (154)
T ss_pred Ee--cCCCCCC--CCCEEEECCCcccc
Confidence 44 3344556 88899999986533
No 322
>PRK11823 DNA repair protein RadA; Provisional
Probab=69.68 E-value=34 Score=42.73 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHH-HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 443 KGLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 443 kGL~WL~~-ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
.++..++. -...|.-.+|.-++|.|||.-++.++..++.. + +++|.|.-.-...++.....+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g--~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-G--GKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-C--CeEEEEEccccHHHHHHHHHH
Confidence 45555543 11112234789999999999999999888743 2 577888765555665544444
No 323
>PRK13342 recombination factor protein RarA; Reviewed
Probab=69.24 E-value=67 Score=39.63 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=17.7
Q ss_pred CEEEEeCCCCcHHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAH 478 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~ 478 (1377)
+-||.-+.|.|||..+-++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999887776543
No 324
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.04 E-value=25 Score=38.77 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=68.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecC--ChhhhHHHhhccCcccc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWG--GLQERMVLRKNINPKRL 536 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~G--s~~~rk~lrk~~~~k~l 536 (1377)
+|.-..|.|||-++.-+.+++... + ..+.+||--.-..-=.+.++.|+--+.+-++.- .......
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~---------- 71 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEI---------- 71 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHH----------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHH----------
Confidence 567789999999998888888765 2 466666653332222233333331122211111 0001111
Q ss_pred cccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhH--HHHHHHh-c-cCCceEEeecCCCCCCHHHHHH
Q 000642 537 YRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSI--RWKTLLS-F-NCRNRLLLTGTPIQNNMAELWA 612 (1377)
Q Consensus 537 ~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~--r~kal~~-l-~~~~rLlLTGTPIQNsm~ELws 612 (1377)
+..-...+..-++++|+||-+.+.-+.... ..+.+.. . ....-|+|++|=-+..+..+..
T Consensus 72 ----------------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 72 ----------------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp ----------------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred ----------------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 111122334446899999998877544332 2222222 2 4556688999877766666655
Q ss_pred HHHhhcC
Q 000642 613 LLHFIMP 619 (1377)
Q Consensus 613 LL~FL~P 619 (1377)
....+.+
T Consensus 136 ~~~~~~~ 142 (196)
T PF00448_consen 136 FYEAFGI 142 (196)
T ss_dssp HHHHSST
T ss_pred HhhcccC
Confidence 5555544
No 325
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=68.95 E-value=11 Score=44.11 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
-+|.-..|.|||..+.++...+.+..
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 57788899999999999999988654
No 326
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=68.94 E-value=41 Score=35.69 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred cceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHHHHHhhcC
Q 000642 563 VKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMP 619 (1377)
Q Consensus 563 ~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELwsLL~FL~P 619 (1377)
-.+++||+|=...+-+. .. .+..+.....+++..+|-.-++.+...++.++..
T Consensus 66 ~~yD~VIiD~pp~~~~~---~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGDE---HL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcHH---HH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 47899999988765211 11 1222234466667778988899998888888843
No 327
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.82 E-value=28 Score=46.27 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=31.9
Q ss_pred cchhHHHHHHHH-HHHHh-cCCC-EE-EEeCCCCcHHHHHHHHHHHHHHh
Q 000642 437 LKEYQLKGLQWL-VNCYE-QGLN-GI-LADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 437 Lr~YQlkGL~WL-~~ly~-~g~n-GI-LADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
=|+-|++-|.-. ..... .+.+ +| |.-.+|.|||..+-.++..|.+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367777777433 33333 3333 33 79999999999999999888653
No 328
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=67.19 E-value=25 Score=47.47 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHHHHHHH--hcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc----CCcEEE-------EeCcccHHHHHHHHHH
Q 000642 445 LQWLVNCY--EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI----WGPFLV-------VAPASVLNNWADEISR 507 (1377)
Q Consensus 445 L~WL~~ly--~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i----~gp~LI-------V~P~Sll~nW~~Ei~k 507 (1377)
+.+++... ....|.||.-++|.|||..+=.+...+... .+ .++.++ +++.+....|...++.
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~-~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ 270 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG-DVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC-CCCccccCCeEEEeehhhhhcccccchHHHHHHHH
Confidence 55665532 234578999999999999987777766542 21 122222 3444555566666654
No 329
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=67.18 E-value=14 Score=48.75 Aligned_cols=68 Identities=28% Similarity=0.279 Sum_probs=46.5
Q ss_pred EEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCCCC-----ChhhhhHhhhchhccCC
Q 000642 1100 LRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDW-----NPTLDLQAMDRAHRLGQ 1170 (1377)
Q Consensus 1100 ~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDsdW-----NPt~d~QAmdRaHRiGQ 1170 (1377)
...+-+.+.++|.-+=..|.+ +.++| |+.|....-|+||. |.+||+=-|.. .-....|.+|||+|.|=
T Consensus 526 AyHhaGLT~eER~~iE~afr~-g~i~v-l~aTSTlaaGVNLP-ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFRE-GNIFV-LVATSTLAAGVNLP-ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eecccccccchHHHHHHHHHh-cCeEE-EEecchhhccCcCC-cceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 334445555666555446665 77888 66777789999998 46777655543 23466899999999984
No 330
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=66.98 E-value=21 Score=43.84 Aligned_cols=43 Identities=21% Similarity=0.049 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-++..|.-|+.+.+.+.|-|+--..|.|||-.++++-.+-+..
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~ 236 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILI 236 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHH
Confidence 4444555555556789999999999999999888876663333
No 331
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=66.69 E-value=23 Score=44.74 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=48.7
Q ss_pred CcchhHHHHHHHHHHHHh--------cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 436 SLKEYQLKGLQWLVNCYE--------QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~--------~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
..+++..+.+.|.....+ ...+.+|+-.+|.|||..+-++..++. .+|+-|-..+++..|.-|..+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCHHHhccccchHHH
Confidence 356777778888775443 233568999999999999988765321 467766666999999999876
No 332
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=66.66 E-value=12 Score=44.54 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH-HHHCCCC--eeEeecCChhhh-HHHhhc
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI-SRFCPDL--KTLPYWGGLQER-MVLRKN 530 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei-~kf~p~l--~vl~y~Gs~~~r-k~lrk~ 530 (1377)
|.+.+.--.-|.|||..-...+.+.........-.||++|..-+.+-..+. ..+.... .+....|...-+ .....
T Consensus 63 G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i- 141 (397)
T KOG0327|consen 63 GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQAL- 141 (397)
T ss_pred CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhh-
Confidence 578888889999999994444433322111112468999988877655544 3444433 444444432221 11100
Q ss_pred cCcccccccCCCeeEEEEechhhhh--hhhhhhccceeEEEEcccccccC--chhHHHHHHHhcc-CCceEEeecCC
Q 000642 531 INPKRLYRRDAGFHILITSYQLLVA--DEKYFRRVKWQYMVLDEAQAIKS--SNSIRWKTLLSFN-CRNRLLLTGTP 602 (1377)
Q Consensus 531 ~~~k~l~~~~~~f~VvItSYe~l~~--d~~~l~~~~w~~VIlDEAH~iKN--~~S~r~kal~~l~-~~~rLlLTGTP 602 (1377)
.....||++.|...+.- +...|..-...+.|+|||..+.. ..-+.......+. .-..+++|||-
T Consensus 142 --------~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 142 --------LKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred --------hccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 12346888888765522 23366666788999999999854 4455666666663 34668888883
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=66.64 E-value=43 Score=37.38 Aligned_cols=27 Identities=22% Similarity=0.099 Sum_probs=21.8
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
+.+-+|.-+.|.|||..+.++..++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445689999999999999887776644
No 334
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=66.19 E-value=66 Score=40.08 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
-+|.-+.|+|||--+-++..++.+.+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~ 158 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhC
Confidence 57888999999999988888877643
No 335
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=65.85 E-value=17 Score=40.60 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=38.4
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHC
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~ 509 (1377)
.-+++-++|.|||+-++-++...+...+ .+++.|+-.....++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHcC
Confidence 3588999999999999999987776523 37788887777778888877653
No 336
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=65.69 E-value=20 Score=45.73 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=78.9
Q ss_pred CeEEEEeccchHHHHHHHHHHh----CCCc----EEEecCCCCHHHHHHHHHHhccCC-CceEEEEeccccccccCcCcC
Q 000642 1073 HRVLLFAQMTKMLNILEDYMNY----RKYR----YLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAA 1143 (1377)
Q Consensus 1073 hKVLIFSQ~t~mLDiLee~L~~----~g~~----y~rLDGstk~edR~~~V~~Fq~~~-di~VfLLSTrAGGlGINLTaA 1143 (1377)
.-+|||=.=..-++.+.+.|.. .+-. ++-++|+.+.++...+ |..-| +++=+++||..+-..|...+-
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecce
Confidence 4799997666666655555543 3322 4678999998776544 77644 666669999998888888776
Q ss_pred CEEEEeCC------CCCh-----------hhhhHhhhchhccCCcCcEEEEEEEeCCCH
Q 000642 1144 DTVIFYES------DWNP-----------TLDLQAMDRAHRLGQTKDVTVYRLICKETV 1185 (1377)
Q Consensus 1144 dtVIfyDs------dWNP-----------t~d~QAmdRaHRiGQtk~VtVYRLItkgTI 1185 (1377)
-.|| |+ .||| -.-.||+-|++|-|.|.+..+|||.++.-.
T Consensus 336 ~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 336 RYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 6554 44 3566 244689999999999999999999998766
No 337
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=65.57 E-value=19 Score=37.42 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1058 LQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1058 L~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g----~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
...+..|+.+....|+||+|+++-...+..|-+.|+... +.+.+.+.... ...-| +|++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV-~i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPV-LITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SE-EEE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeE-EEecCc
Confidence 589999999999999999999999999999999998653 23334222211 22345 555433
Q ss_pred cccccCcCcCCEEEEeCCCC
Q 000642 1134 GGLGINLTAADTVIFYESDW 1153 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdW 1153 (1377)
.. -....++.+|++++.+
T Consensus 80 ~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 80 EA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp S------S--SEEEE--SS-
T ss_pred cc--CCCCCCCEEEECCCCC
Confidence 21 2344599999999988
No 338
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=65.46 E-value=21 Score=38.73 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=23.9
Q ss_pred EEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc
Q 000642 460 LADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1377)
Q Consensus 460 LADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~ 495 (1377)
..-.|+.|||-..|..+..+... + .++||+-|.
T Consensus 6 i~GpM~sGKS~eLi~~~~~~~~~-~--~~v~~~kp~ 38 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRYEIA-G--KKVLVFKPA 38 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT-T---EEEEEEES
T ss_pred EECCcCChhHHHHHHHHHHHHhC-C--CeEEEEEec
Confidence 44689999999999888666443 2 467887774
No 339
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=64.54 E-value=24 Score=44.89 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=64.5
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHH-hcccCCcEEEEeC-cccHHH----HHHHHHHHCCCCeeEeecCChhhhHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAE-EKNIWGPFLVVAP-ASVLNN----WADEISRFCPDLKTLPYWGGLQERMVL 527 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e-~~~i~gp~LIV~P-~Sll~n----W~~Ei~kf~p~l~vl~y~Gs~~~rk~l 527 (1377)
|...+.|. .=-=|||...+++|+.+.. -.|| .+..|+- +++..- -..-+.+|+|.-.++.-.|+. +
T Consensus 202 QkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI--~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t----I- 273 (668)
T PHA03372 202 QKATVFLV-PRRHGKTWFIIPIISFLLKNIIGI--SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV----I- 273 (668)
T ss_pred ccceEEEe-cccCCceehHHHHHHHHHHhhcCc--eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE----E-
Confidence 44334333 3345999999999988775 3444 5666665 333332 334456888876553222210 0
Q ss_pred hhccCcccccccCCCee-EEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc---cCCceEEeecC
Q 000642 528 RKNINPKRLYRRDAGFH-ILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF---NCRNRLLLTGT 601 (1377)
Q Consensus 528 rk~~~~k~l~~~~~~f~-VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l---~~~~rLlLTGT 601 (1377)
....+..... +..++|+ ..-++...|+++++||||-|+-.. ...++.| ....-+.+|-|
T Consensus 274 -------~~s~pg~Kst~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a---~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 274 -------SIDHRGAKSTALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDA---FNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -------EEecCCCcceeeehhhcc-----CccccCCCCCEEEEehhhccCHHH---HHHhhhhhcccCceEEEEeCC
Confidence 0000001111 1122232 234556689999999999997542 2333333 44444555543
No 340
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=64.35 E-value=21 Score=47.64 Aligned_cols=166 Identities=17% Similarity=0.265 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHhhC--CCeEEEEeccchHHHHHHHHHH----hC---CCcEEEecCCCCHHHHHHHHHHhccCC-Cce
Q 000642 1056 GKLQTLDILLKRLRAE--NHRVLLFAQMTKMLNILEDYMN----YR---KYRYLRLDGSSTIMDRRDMVRDFQHRS-DIF 1125 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~--ghKVLIFSQ~t~mLDiLee~L~----~~---g~~y~rLDGstk~edR~~~V~~Fq~~~-di~ 1125 (1377)
-....+..|+..+.+. ...||||-.=..-+.-+.+.|. .+ ++-...+++++..++.+.+ |+..| +++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3555666677666554 3589999876666665555554 33 3567788999998887766 66544 444
Q ss_pred EEEEeccccccccCcCcCCEEE--------EeCCC---------C-ChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHH
Q 000642 1126 VFLLSTRAGGLGINLTAADTVI--------FYESD---------W-NPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEE 1187 (1377)
Q Consensus 1126 VfLLSTrAGGlGINLTaAdtVI--------fyDsd---------W-NPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEE 1187 (1377)
=++++|--+-..|..-..-.|| .|||- | .-+.-.||.|||+| .++-.+|+|+++.-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 4599998888888776654443 56653 2 22445677777766 67889999999875444
Q ss_pred HHH-----HHHHHHHHHHHHHHcCCcccCCCCCHHhHHHhhcCcHHHHH
Q 000642 1188 KIL-----QRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLLDDAQLEQ 1231 (1377)
Q Consensus 1188 rI~-----~ra~~K~~l~~~Vi~g~~~~~~~l~~~di~~ll~d~~~l~~ 1231 (1377)
-+. +.+ +.-+.++++.-+... ..+..++.+.+++......
T Consensus 549 ~~~~~q~PEil--R~pL~~l~L~iK~l~--~~~~~~fLskaldpP~~~~ 593 (924)
T KOG0920|consen 549 LMLAYQLPEIL--RTPLEELCLHIKVLE--QGSIKAFLSKALDPPPADA 593 (924)
T ss_pred cccccCChHHH--hChHHHhhheeeecc--CCCHHHHHHHhcCCCChHH
Confidence 333 222 234455666544222 2334466666666655443
No 341
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=64.02 E-value=37 Score=45.17 Aligned_cols=71 Identities=20% Similarity=0.138 Sum_probs=42.5
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccHH---HHHHHHHHHCCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVLN---NWADEISRFCPD 511 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll~---nW~~Ei~kf~p~ 511 (1377)
..++-|+-|.--|. .|-|.=..+|=|||+.+.. -+||..-.+ ..+=||+. ..|.. .|...+.+|+ +
T Consensus 78 r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fL-G 147 (925)
T PRK12903 78 RPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFL-G 147 (925)
T ss_pred CcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHh-C
Confidence 34667888873331 2457778899999997653 334432222 23444444 44432 5999999987 5
Q ss_pred CeeEe
Q 000642 512 LKTLP 516 (1377)
Q Consensus 512 l~vl~ 516 (1377)
+.|-+
T Consensus 148 LsvG~ 152 (925)
T PRK12903 148 LSVGI 152 (925)
T ss_pred Cceee
Confidence 55543
No 342
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.54 E-value=31 Score=44.81 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCC--C-EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 440 YQLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~--n-GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.|...+..|.+....|. . -|+.-..|.|||..|..|...+.+..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 35566666766666542 2 36889999999999999998887643
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=63.24 E-value=44 Score=38.34 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=36.1
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
.|.-.+|+-..|.|||.-++.++.+++..++ .+++++.-.....++..-+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcccCHHHHHHHH
Confidence 4556799999999999999999988876533 4778877644444444444
No 344
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=63.08 E-value=46 Score=42.95 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=28.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
-+|.-..|+|||--+.|+..++...+.. ..++.|.-..++..+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~~el~~a 362 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFTNEFINS 362 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHHHHH
Confidence 4788999999999998888777643211 234444333334344333
No 345
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=62.91 E-value=20 Score=47.00 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
-++.-+.|.|||..|-++...+.+.+
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccc
Confidence 37899999999999999988887653
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.67 E-value=1.5e+02 Score=37.74 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~ 493 (1377)
|..-+|.-..|.|||-.+..|...+...+.. +.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-kkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-RDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 4344566779999999998888777654322 3455554
No 347
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.46 E-value=24 Score=42.46 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=41.2
Q ss_pred ccCCchhccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 427 VQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 427 v~qP~~l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
+.-|..|+|-++|+ .|.+|+-.+|.|||+-|=|+.... + -.|.=|.-..+...|.-|=+
T Consensus 232 i~mPe~F~GirrPW---------------kgvLm~GPPGTGKTlLAKAvATEc----~--tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 232 IWMPEFFKGIRRPW---------------KGVLMVGPPGTGKTLLAKAVATEC----G--TTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred hhhHHHHhhccccc---------------ceeeeeCCCCCcHHHHHHHHHHhh----c--CeEEEechhhhhhhhccchH
Confidence 44566677766664 245789999999999887765432 2 24555555666778988866
Q ss_pred HH
Q 000642 507 RF 508 (1377)
Q Consensus 507 kf 508 (1377)
|.
T Consensus 291 Kl 292 (491)
T KOG0738|consen 291 KL 292 (491)
T ss_pred HH
Confidence 63
No 348
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=62.41 E-value=30 Score=37.30 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=39.3
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcc-------cCCcEEEEeCcccHHHHHHHHHHHC
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKN-------IWGPFLVVAPASVLNNWADEISRFC 509 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~-------i~gp~LIV~P~Sll~nW~~Ei~kf~ 509 (1377)
.|.=++++-..|.|||.-++.++++++...+ ..+++|.|..-....++.+-+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 3545799999999999999999999985332 2358899988777777777776544
No 349
>PRK09183 transposase/IS protein; Provisional
Probab=62.09 E-value=42 Score=38.71 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 440 YQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 440 YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
.++.++.|+ +.|.+-+|.-+.|.|||.-+.++...+.
T Consensus 91 ~~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 91 QSLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HHHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 355556663 3578889999999999999999854433
No 350
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.52 E-value=33 Score=40.76 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=33.0
Q ss_pred hhhhccceeEEEEcccccccCchhHHHHHHHhc---------cCCceEEee--cCCCCCCHHH
Q 000642 558 KYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF---------NCRNRLLLT--GTPIQNNMAE 609 (1377)
Q Consensus 558 ~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l---------~~~~rLlLT--GTPIQNsm~E 609 (1377)
++-....+|+||+|=|-|+-|... ...-|..+ .++|.++|+ ||-=||.+.-
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~n-LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKN-LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchh-HHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 445566899999999999977432 22233222 355655555 8888887664
No 351
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=61.35 E-value=30 Score=46.15 Aligned_cols=111 Identities=20% Similarity=0.277 Sum_probs=83.0
Q ss_pred CCCeEEEEeccchHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHhccCCCc-eEEEEeccccccccCcCcCCE
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNY----RKYRYLRLDGSSTIMDRRDMVRDFQHRSDI-FVFLLSTRAGGLGINLTAADT 1145 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDiLee~L~~----~g~~y~rLDGstk~edR~~~V~~Fq~~~di-~VfLLSTrAGGlGINLTaAdt 1145 (1377)
+..-+|||-.=..-++-..+.|.. .....+-|+|..+.++... -|+..+.- +=++|||..+-.+|...+.-.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 346899998877777777777766 3577899999999888766 58775544 424999999999998888777
Q ss_pred EEEeCC------CCChhhh-----------hHhhhchhccCCcCcEEEEEEEeCCCHH
Q 000642 1146 VIFYES------DWNPTLD-----------LQAMDRAHRLGQTKDVTVYRLICKETVE 1186 (1377)
Q Consensus 1146 VIfyDs------dWNPt~d-----------~QAmdRaHRiGQtk~VtVYRLItkgTIE 1186 (1377)
|| |+ -|||..- ..|.=|++|-|.+.+-..|||.+++..+
T Consensus 335 VI--DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VI--DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred Ee--cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 65 43 3444322 3456677777888899999999986655
No 352
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=61.22 E-value=64 Score=36.47 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n 500 (1377)
.|.-.+|.-+.|.|||.-+..+++.++.. + .+++.|+..-...+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g--~~~~yi~~e~~~~~ 66 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN-G--YSVSYVSTQLTTTE 66 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC-C--CcEEEEeCCCCHHH
Confidence 35556889999999999999999887653 2 36677776444333
No 353
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.82 E-value=47 Score=41.29 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=25.5
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
..+++-..|.|||..+..+..++... + .++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~-g--~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKK-G--LKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEecC
Confidence 45788899999999999988888753 3 24455443
No 354
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.79 E-value=50 Score=40.16 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=29.3
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcc
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~S 496 (1377)
.|..-+|.-..|.|||..+..+.+.+...++. ..+.+|+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~ 177 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDS 177 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEeccc
Confidence 45566789999999999999888876544332 2455555433
No 355
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.51 E-value=16 Score=42.27 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=39.2
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCccc
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASV 497 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sl 497 (1377)
|-+-|.+.++| . .| +-++---.|.|||...+..++++...+++ ...+|||++...
T Consensus 1 l~~eQ~~~i~~-~----~~-~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----EG-PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS------SS-EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC-C----CC-CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 34568888876 2 23 44555569999999999999999887643 356999998655
No 356
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=60.28 E-value=11 Score=42.88 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCcEEEE--eCcccH
Q 000642 464 MGLGKTIQAMAFLAHLAEEKNIWGPFLVV--APASVL 498 (1377)
Q Consensus 464 MGLGKTIQsIAlLa~L~e~~~i~gp~LIV--~P~Sll 498 (1377)
=|.|||-.+.++...|.... .++|+| +|.+++
T Consensus 11 GGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~L 44 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLL 44 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHH
Confidence 48899999999988888643 367776 565544
No 357
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.15 E-value=71 Score=37.17 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC----cccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhcc
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP----ASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNI 531 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P----~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~ 531 (1377)
..-.|.-..|.|||.....+...+... + ..+.+|.- ...+.||....... +
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~-~--~~v~~i~~D~~ri~~~~ql~~~~~~~--~-------------------- 130 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK-K--KTVGFITTDHSRIGTVQQLQDYVKTI--G-------------------- 130 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc-C--CeEEEEecCCCCHHHHHHHHHHhhhc--C--------------------
Confidence 344677779999999887777766532 1 34555554 23566776443321 1
Q ss_pred CcccccccCCCeeEEE-Eechhhhhhhhhhhc-cceeEEEEcccccccCchhHHHHHHHhc----cC-CceEEeecCCCC
Q 000642 532 NPKRLYRRDAGFHILI-TSYQLLVADEKYFRR-VKWQYMVLDEAQAIKSSNSIRWKTLLSF----NC-RNRLLLTGTPIQ 604 (1377)
Q Consensus 532 ~~k~l~~~~~~f~VvI-tSYe~l~~d~~~l~~-~~w~~VIlDEAH~iKN~~S~r~kal~~l----~~-~~rLlLTGTPIQ 604 (1377)
+.+.. .+...+.....++.. .++++||+|-+=+.-... .....+..+ .. ...|.|++|=-.
T Consensus 131 -----------~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 131 -----------FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred -----------ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 12211 111222222233433 368999999987763222 222222222 22 235668888766
Q ss_pred CCHHHHHHHHHh
Q 000642 605 NNMAELWALLHF 616 (1377)
Q Consensus 605 Nsm~ELwsLL~F 616 (1377)
+.+.+...-++-
T Consensus 199 ~d~~~~~~~f~~ 210 (270)
T PRK06731 199 KDMIEIITNFKD 210 (270)
T ss_pred HHHHHHHHHhCC
Confidence 666665544443
No 358
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=60.04 E-value=30 Score=41.58 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHHHHHhcCCCE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
++|+|...-+-|..+-..-..+ ++.-..|.|||..+.+|...|.+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4677777766666653222234 5788999999999999999998754
No 359
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=59.07 E-value=41 Score=42.00 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCC--C-EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 441 QLKGLQWLVNCYEQGL--N-GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~--n-GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
|-..+.+|.+.+..|. + -|+.-+.|.|||..+.++...+.+.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5556667777766553 2 3788899999999999999888764
No 360
>PRK12377 putative replication protein; Provisional
Probab=59.04 E-value=73 Score=36.60 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
.+-+|.-.+|.|||-.+.|+..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345788899999999999999888753
No 361
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=58.90 E-value=36 Score=46.40 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=8.4
Q ss_pred ceEEeecCCCCCC
Q 000642 594 NRLLLTGTPIQNN 606 (1377)
Q Consensus 594 ~rLlLTGTPIQNs 606 (1377)
+...-|||-|.|+
T Consensus 719 ~~~~~~~~~~~~~ 731 (1021)
T PTZ00266 719 HTKGNTGMNVNCK 731 (1021)
T ss_pred eecCCCcceeccc
Confidence 3455677777766
No 362
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.89 E-value=67 Score=38.78 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
|...+.-+.+....|. +-++.-+.|.|||..+-++..++.+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3334444555554442 4578999999999888888666654
No 363
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=58.44 E-value=58 Score=40.75 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
-+|+-++|.|||..++.++..++... +++|.|...-...|......+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHH
Confidence 48899999999999999988887542 578888876666666554444
No 364
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=58.31 E-value=48 Score=34.66 Aligned_cols=83 Identities=16% Similarity=-0.003 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRK----YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g----~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.+.++..+..|+.+....|+||+|++.-...+..|-++|+... +.+.+..+.. ....-|+|
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~--------------~~~~PV~l 75 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGP--------------AAGQPVLL 75 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCC--------------CCCCCEEE
Confidence 45679999999999999999999999999999999999997542 1222222211 12345644
Q ss_pred EeccccccccCcCcCCEEEEeCCCC
Q 000642 1129 LSTRAGGLGINLTAADTVIFYESDW 1153 (1377)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIfyDsdW 1153 (1377)
+. +-.-|...++.+|+++..+
T Consensus 76 -~~---~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 76 -TW---PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred -Ec---CCCCCCCCCcEEEECCCCC
Confidence 31 1124667788999998875
No 365
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=58.06 E-value=41 Score=43.90 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=62.3
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHH----HHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNI----LEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDi----Lee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.|||-.+..-.+......|.+|+|-+.......- +..++...|+++..++|+++..+|+.+.+...+ +++.| +
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~I-i 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHL-V 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCE-E
Confidence 67999876543333334568899998887665443 444455558999999999999999998888875 44555 4
Q ss_pred Eeccc-cccccCcCcCCEEEE
Q 000642 1129 LSTRA-GGLGINLTAADTVIF 1148 (1377)
Q Consensus 1129 LSTrA-GGlGINLTaAdtVIf 1148 (1377)
++|.+ .-.++++.....||+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EecHHHHhccccccccceEEE
Confidence 45543 223445555555554
No 366
>PRK06904 replicative DNA helicase; Validated
Probab=57.50 E-value=77 Score=39.92 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=40.1
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
.|-=.|||--+|+|||.-++-++.+.+...+ .|+|++..---..++..-+-.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs~~ql~~Rlla 271 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMPAEQIMMRMLA 271 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHHH
Confidence 3334599999999999999888877775433 489999988888887776643
No 367
>PRK04132 replication factor C small subunit; Provisional
Probab=57.42 E-value=32 Score=46.03 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=29.7
Q ss_pred ceeEEEEcccccccCc-hhHHHHHHHhccCCceEEeecCCCCCCHHHHH
Q 000642 564 KWQYMVLDEAQAIKSS-NSIRWKTLLSFNCRNRLLLTGTPIQNNMAELW 611 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~-~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELw 611 (1377)
++.++||||||++-.. +....+.+-......+++|+.++...=+.-|.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 5789999999999432 22222333333567788899887654443333
No 368
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.38 E-value=5.8 Score=50.34 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhh---hhhhhccceeEEEEcccccccC
Q 000642 502 ADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVAD---EKYFRRVKWQYMVLDEAQAIKS 578 (1377)
Q Consensus 502 ~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d---~~~l~~~~w~~VIlDEAH~iKN 578 (1377)
..|+......+++.+|+|+..-- ...++|+-.|+.+.++ ...=-..+=..|||||||++-+
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~av----------------p~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAV----------------PQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhcc----------------ccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Q ss_pred chhHHHHHHHhc
Q 000642 579 SNSIRWKTLLSF 590 (1377)
Q Consensus 579 ~~S~r~kal~~l 590 (1377)
.-...+-+-.++
T Consensus 363 ti~smhsa~Is~ 374 (821)
T KOG1133|consen 363 TICSMHSAEISF 374 (821)
T ss_pred HHHHhhhhheeH
No 369
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=57.22 E-value=41 Score=45.51 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 444 GLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 444 GL~WL~~ly~--~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
-+++++.... ...|.||--++|.|||..+-++...+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3666665432 3457899999999999999887766653
No 370
>PRK04195 replication factor C large subunit; Provisional
Probab=57.15 E-value=61 Score=40.83 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=19.7
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHL 479 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L 479 (1377)
...+|.-..|.|||..+-++...+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999998888776554
No 371
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=56.89 E-value=29 Score=34.47 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=25.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHH
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNN 500 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~n 500 (1377)
+|--.+|.|||..+-.+..++. -+++.+....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhcc------cccccccccccccc
Confidence 4556799999999888777652 36666666665544
No 372
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=56.88 E-value=31 Score=45.39 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=66.6
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEe
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLS 1130 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~-g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLS 1130 (1377)
++.|||.++..+++.+..+.|..|||--.-.....-+.+.+..+ |.++..++.+.+..+|.+.-.+..+ ++.+| ++-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~-G~~~v-VIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR-GEARV-VIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc-CCceE-EEE
Confidence 68999999999999999999999999988777766666666554 8999999999999999888777766 77888 555
Q ss_pred ccc
Q 000642 1131 TRA 1133 (1377)
Q Consensus 1131 TrA 1133 (1377)
||+
T Consensus 303 tRS 305 (730)
T COG1198 303 TRS 305 (730)
T ss_pred ech
Confidence 665
No 373
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=56.64 E-value=1.2e+02 Score=36.15 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=71.2
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCee
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKT 514 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~v 514 (1377)
+.+-+.|..-| ..+...+.|.+++-.+|.|||-..-+++.++..... ..++++|-... |+. ++.-++
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~-~~rivtIEd~~-------El~--~~~~~~ 197 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDP-TERVFIIEDTG-------EIQ--CAAENY 197 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCC-CceEEEEcCCC-------ccc--cCCCCE
Confidence 34445555444 444456788999999999999877777766542211 12333332221 221 111111
Q ss_pred EeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccCCc
Q 000642 515 LPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRN 594 (1377)
Q Consensus 515 l~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~ 594 (1377)
+.+... .. .++..++ ....+++.++||+.|. +. ...+.++..+++-|
T Consensus 198 v~~~~~--------------------~~-----~~~~~ll---~~aLR~~PD~IivGEi---R~--~Ea~~~l~A~~tGh 244 (319)
T PRK13894 198 VQYHTS--------------------ID-----VNMTALL---KTTLRMRPDRILVGEV---RG--PEALDLLMAWNTGH 244 (319)
T ss_pred EEEecC--------------------CC-----CCHHHHH---HHHhcCCCCEEEEecc---CC--HHHHHHHHHHHcCC
Confidence 111100 00 1233222 2234678999999996 33 33456677777777
Q ss_pred eEEeecCCCCCCHHHHHHH
Q 000642 595 RLLLTGTPIQNNMAELWAL 613 (1377)
Q Consensus 595 rLlLTGTPIQNsm~ELwsL 613 (1377)
.-.+ +|=+-|+..+...-
T Consensus 245 ~G~~-tTiHa~s~~~ai~R 262 (319)
T PRK13894 245 EGGA-ATLHANNAKAGLDR 262 (319)
T ss_pred CceE-EEECCCCHHHHHHH
Confidence 6433 56677777775443
No 374
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=55.99 E-value=68 Score=44.28 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=71.9
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeE
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTL 515 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl 515 (1377)
.|-+-|..++.-+. ..+.-++|---.|.|||-..-++...+.. .+ ..++.++|..-... .+..-. ++...
T Consensus 381 ~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~-~G--~~V~g~ApTgkAA~---~L~e~~-Gi~a~ 450 (1102)
T PRK13826 381 RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEA-AG--YRVVGGALAGKAAE---GLEKEA-GIQSR 450 (1102)
T ss_pred CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEcCcHHHHH---HHHHhh-CCCee
Confidence 68999999998664 22334677888999999888776655443 33 36778888654432 222211 11110
Q ss_pred eecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc-cCCc
Q 000642 516 PYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF-NCRN 594 (1377)
Q Consensus 516 ~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l-~~~~ 594 (1377)
..+. +...|.. ....+ -.-++||||||..+-+. .....+... ....
T Consensus 451 TIas-------~ll~~~~----------------------~~~~l--~~~~vlVIDEAsMv~~~--~m~~Ll~~~~~~ga 497 (1102)
T PRK13826 451 TLSS-------WELRWNQ----------------------GRDQL--DNKTVFVLDEAGMVASR--QMALFVEAVTRAGA 497 (1102)
T ss_pred eHHH-------HHhhhcc----------------------CccCC--CCCcEEEEECcccCCHH--HHHHHHHHHHhcCC
Confidence 0000 0000100 00011 12468999999998432 233334444 4678
Q ss_pred eEEeecCCCCC
Q 000642 595 RLLLTGTPIQN 605 (1377)
Q Consensus 595 rLlLTGTPIQN 605 (1377)
+++|.|=|-|-
T Consensus 498 rvVLVGD~~QL 508 (1102)
T PRK13826 498 KLVLVGDPEQL 508 (1102)
T ss_pred EEEEECCHHHc
Confidence 99999999874
No 375
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=55.90 E-value=38 Score=39.74 Aligned_cols=42 Identities=29% Similarity=0.127 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHh--cCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 440 YQLKGLQWLVNCYE--QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 440 YQlkGL~WL~~ly~--~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
+|-..|+-|.+-.. .+.+-++--.+|.|||-.+.+|.+.|.+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 67777776665433 2335577889999999999999988875
No 376
>PTZ00293 thymidine kinase; Provisional
Probab=55.60 E-value=32 Score=38.48 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=25.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPAS 496 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~S 496 (1377)
++.-.||.|||-+-|-.+...... + .+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a-g--~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS-E--KKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc-C--CceEEEEecc
Confidence 456789999998887766554433 2 5789998864
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=55.51 E-value=32 Score=38.32 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=27.2
Q ss_pred ceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCC
Q 000642 564 KWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNN 606 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNs 606 (1377)
..+++||||++.+-... ...+........+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~g~---l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY---LLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCChHH---HHHHHhhccCcceEEEECchhcc
Confidence 57899999999984322 22244444445688889999854
No 378
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=55.46 E-value=42 Score=43.17 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-|+.-+.|.|||..+-++...+.+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 3899999999999999999888764
No 379
>PRK11054 helD DNA helicase IV; Provisional
Probab=55.08 E-value=31 Score=45.40 Aligned_cols=68 Identities=19% Similarity=0.064 Sum_probs=49.9
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCcccHHHHHHH-HHHHC
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASVLNNWADE-ISRFC 509 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sll~nW~~E-i~kf~ 509 (1377)
.|-+-|.++|.+- .|. .++--..|.|||-..++-++||....+. ...+|++|...-..++..| |....
T Consensus 196 ~L~~~Q~~av~~~-----~~~-~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVVNG-----EDS-LLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHhCC-----CCC-eEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4889999999532 243 3444469999999999999999976543 3479999998887776665 44433
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=55.08 E-value=1.1e+02 Score=36.61 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=22.8
Q ss_pred EEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe
Q 000642 460 LADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1377)
Q Consensus 460 LADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~ 493 (1377)
|.-..|.|||-.+..+..++... + +.++|+.
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~~-g--~~V~Li~ 149 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKAQ-G--KKVLLAA 149 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHhc-C--CeEEEEe
Confidence 44599999999998888887643 2 4666665
No 381
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=54.73 E-value=97 Score=41.20 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcc-CCCceEEEEec
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLST 1131 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLLST 1131 (1377)
+.-.|..+...-+......|..|||-+-....-..+...|...|++...|+-.-. .|..-+-.+.- .+-+ -++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaV---TiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAV---TIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCcc---cccc
Confidence 4567899999999999999999999999999999999999999999988876543 55555554442 2333 5689
Q ss_pred cccccccCcCc-CC----------EEEEeCCCCChhhhhHhhhchhccCC
Q 000642 1132 RAGGLGINLTA-AD----------TVIFYESDWNPTLDLQAMDRAHRLGQ 1170 (1377)
Q Consensus 1132 rAGGlGINLTa-Ad----------tVIfyDsdWNPt~d~QAmdRaHRiGQ 1170 (1377)
--+|.|-++.- .+ +||=-+-.=+--+|-|=-||++|.|-
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 99999988764 33 56766766677788899999999993
No 382
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=54.70 E-value=55 Score=38.88 Aligned_cols=43 Identities=21% Similarity=0.364 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|-..+..|.....+|. .=++.-+.|.||+..+.++..++.+..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5556667777666663 347888999999999999999998753
No 383
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=54.52 E-value=71 Score=38.64 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW 501 (1377)
+.|.+|.-+.|.|||..+-++...+. .+++-|....+...|
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVRKY 196 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC------CCEEecchHHHHHHh
Confidence 34568999999999998888765442 355555544444333
No 384
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.41 E-value=15 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
.|-|++-.+|.|||-...++...|.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 3679999999999988877776665
No 385
>PRK14873 primosome assembly protein PriA; Provisional
Probab=53.17 E-value=60 Score=42.57 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=66.5
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHhccCCCceEEEEec
Q 000642 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-K-YRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~-g-~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLST 1131 (1377)
.|||-+.+..++......|..|||-..-.....-+.+.|..+ | ..+..++...+..+|.+.-....+ +++.| ++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~I-ViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARV-VVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcE-EEEc
Confidence 589999999999999999999999988888888777777654 4 679999999999999988777765 66666 7788
Q ss_pred ccc
Q 000642 1132 RAG 1134 (1377)
Q Consensus 1132 rAG 1134 (1377)
|++
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
Confidence 874
No 386
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.91 E-value=21 Score=38.57 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=32.1
Q ss_pred hhhhccceeEEEEcccccccC----chhHHHHHHHhccCCceEEeecCCCCCCHHHH
Q 000642 558 KYFRRVKWQYMVLDEAQAIKS----SNSIRWKTLLSFNCRNRLLLTGTPIQNNMAEL 610 (1377)
Q Consensus 558 ~~l~~~~w~~VIlDEAH~iKN----~~S~r~kal~~l~~~~rLlLTGTPIQNsm~EL 610 (1377)
..+..-.|++|||||.-..-+ +.......+..-...--++|||.=....+.|+
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 334556899999999875433 22333444444344457999998554444443
No 387
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=52.80 E-value=1.5e+02 Score=35.27 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=19.4
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHL 479 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L 479 (1377)
.+.+|.-..|.|||..+-++...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 356899999999999988766554
No 388
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.69 E-value=1.1e+02 Score=38.69 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHH-hcCC----CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCc-EEEEeCcccHHHHH---HHHHHHC
Q 000642 439 EYQLKGLQWLVNCY-EQGL----NGILADEMGLGKTIQAMAFLAHLAEEKNIWGP-FLVVAPASVLNNWA---DEISRFC 509 (1377)
Q Consensus 439 ~YQlkGL~WL~~ly-~~g~----nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp-~LIV~P~Sll~nW~---~Ei~kf~ 509 (1377)
|+|.--+..+.... ..|. -++|.=.=|=|||.-+.++..|..--.+..++ ++++++ ...|=. +++..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~--~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAAN--TRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeC--CHHHHHHHHHHHHHHH
Confidence 56765554444321 1121 15666678899999988887665544444444 445554 223211 2333332
Q ss_pred ---CCCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHH
Q 000642 510 ---PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKT 586 (1377)
Q Consensus 510 ---p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~ka 586 (1377)
|.+.... + ..+.+ ...+.+....... .+..+.++..-....+..++|+||+|..++. ..+.+
T Consensus 79 ~~~~~l~~~~--~-----~~~~~-~~~~~i~~~~~~s-----~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~ 143 (477)
T PF03354_consen 79 EASPELRKRK--K-----PKIIK-SNKKEIEFPKTGS-----FFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDA 143 (477)
T ss_pred HhChhhccch--h-----hhhhh-hhceEEEEcCCCc-----EEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHH
Confidence 2222110 0 00000 0011111111111 1222344555666778899999999999874 34455
Q ss_pred HHhc---cCCceEEeecCC
Q 000642 587 LLSF---NCRNRLLLTGTP 602 (1377)
Q Consensus 587 l~~l---~~~~rLlLTGTP 602 (1377)
+..= .....++...|+
T Consensus 144 l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 144 LESGMGARPNPLIIIISTA 162 (477)
T ss_pred HHhhhccCCCceEEEEeCC
Confidence 5432 233344444554
No 389
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.50 E-value=1.3e+02 Score=34.16 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCcEEEE-e-CcccHHHHHHHHH
Q 000642 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVV-A-PASVLNNWADEIS 506 (1377)
Q Consensus 465 GLGKTIQsIAlLa~L~e~~~i~gp~LIV-~-P~Sll~nW~~Ei~ 506 (1377)
|.|||--+++|...++.++ +++.|| | |..-+..|.+-..
T Consensus 12 GaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhcc
Confidence 8899999999999998753 355555 3 6777889966543
No 390
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.90 E-value=27 Score=42.91 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=36.8
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
+-+|+-..|.|||.-+.|+..... -.|-=|.|.+|..-|.-|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~------atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESG------ATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhc------ceEeeccHHHhhhhccChHHHH
Confidence 337899999999999988775543 3677889999999998887664
No 391
>PF13892 DBINO: DNA-binding domain
Probab=51.78 E-value=1.8e+02 Score=30.51 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000642 228 KRFAETCQREVKMKVSRSLKLMRGAAIRTRKLARDMLLFWKRVDKEMAEVRKREEREAAE 287 (1377)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~re~~~~wk~~~~~~~~~~~~~ek~~~~ 287 (1377)
|+-+.-+.+-.|-.+.|+-|.+++...--|+.-+|+-..-++-+||+.+..++.+...++
T Consensus 49 rr~~~rs~k~~Kd~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~e~ 108 (139)
T PF13892_consen 49 RRKQSRSQKNMKDTQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKREA 108 (139)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 444455666777788899999999998888999999999999999988887776655443
No 392
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=51.69 E-value=1.4e+02 Score=33.46 Aligned_cols=48 Identities=10% Similarity=0.283 Sum_probs=35.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
.+++-++|.|||+-+..++...+.. + .+++.|.=........+.+..+
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~-g--~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ-G--KKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC-C--CEEEEEEcCCCHHHHHHHHHHC
Confidence 4788999999999999998776543 2 5778777666666666666654
No 393
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=51.57 E-value=59 Score=29.56 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHH
Q 000642 197 IGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKLMR-GAAIRTRKL 259 (1377)
Q Consensus 197 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~ 259 (1377)
...-|..+. .+|.-+++.|.+.+..+...++|+|..|..-.+.......|..+ ....|-++|
T Consensus 9 ~k~h~d~lL-~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L 71 (73)
T PF07529_consen 9 QKTHHDHLL-EEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRAL 71 (73)
T ss_pred cchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 356688887 78999999999999999999999999999888766655554333 333344443
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=51.38 E-value=1.6e+02 Score=32.49 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=69.6
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHH-HHHHH--HHCCCCeeEeecCChhhhHHHhhc
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW-ADEIS--RFCPDLKTLPYWGGLQERMVLRKN 530 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW-~~Ei~--kf~p~l~vl~y~Gs~~~rk~lrk~ 530 (1377)
...+-++.--.|-|||--++++....+.. + .+++||= .+-..| ..|.. +.+|++.+..+..+. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G--~~V~ivQ--FlKg~~~~GE~~~l~~l~~v~~~~~g~~~--------~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-G--KKVGVVQ--FIKGAWSTGERNLLEFGGGVEFHVMGTGF--------T 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-C--CeEEEEE--EecCCCccCHHHHHhcCCCcEEEECCCCC--------c
Confidence 34467889999999999999987766653 3 3666652 111122 12222 223444433321110 0
Q ss_pred cCcccccccCCCeeEEEEec-hhhhhhhhhhhccceeEEEEcccccccC----chhHHHHHHHhccCCceEEeecCCCCC
Q 000642 531 INPKRLYRRDAGFHILITSY-QLLVADEKYFRRVKWQYMVLDEAQAIKS----SNSIRWKTLLSFNCRNRLLLTGTPIQN 605 (1377)
Q Consensus 531 ~~~k~l~~~~~~f~VvItSY-e~l~~d~~~l~~~~w~~VIlDEAH~iKN----~~S~r~kal~~l~~~~rLlLTGTPIQN 605 (1377)
|... +..-+. ..+ +.+..-...+..-.|++|||||.-..-+ +.......+..-...--++|||-=...
T Consensus 88 ~~~~-----~~~e~~--~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 88 WETQ-----DRERDI--AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred ccCC-----CcHHHH--HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 0000 000000 000 0011113345566899999999866544 233334444433444579999985544
Q ss_pred CHHHHHHHH
Q 000642 606 NMAELWALL 614 (1377)
Q Consensus 606 sm~ELwsLL 614 (1377)
.+-|+..++
T Consensus 161 ~Lie~ADlV 169 (191)
T PRK05986 161 ELIEAADLV 169 (191)
T ss_pred HHHHhCchh
Confidence 444443333
No 395
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.94 E-value=59 Score=44.03 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=27.4
Q ss_pred HHHHHHHH--hcCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 445 LQWLVNCY--EQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 445 L~WL~~ly--~~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
++.++... ....|.||.-++|.|||..+-++...+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55666522 34458899999999999999887776653
No 396
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=49.87 E-value=63 Score=36.30 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHhhC-CCeEEEEe----------------------------------------------------
Q 000642 1053 TDSGKLQTLDILLKRLRAE-NHRVLLFA---------------------------------------------------- 1079 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~-ghKVLIFS---------------------------------------------------- 1079 (1377)
..+||-..+..++..+..+ |++|+.||
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIGELKELPIYID 101 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEe
Q ss_pred -----ccchHHHHHHHHHHhCCCcEEEecCCCCHHHHH-------------HHHHHhccCCCceEEEEe-----------
Q 000642 1080 -----QMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR-------------DMVRDFQHRSDIFVFLLS----------- 1130 (1377)
Q Consensus 1080 -----Q~t~mLDiLee~L~~~g~~y~rLDGstk~edR~-------------~~V~~Fq~~~di~VfLLS----------- 1130 (1377)
......+.+..+....+.+++.||.=+...... ..+..|...-++-|+++|
T Consensus 102 ~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r~~~~~~~ 181 (242)
T cd00984 102 DSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSRGVESRAD 181 (242)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhhhccCC
Q ss_pred -----ccccccccCcCcCCEEEEeCCCCChhhhhHhhhch------hccCCcCcEEEEE
Q 000642 1131 -----TRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRA------HRLGQTKDVTVYR 1178 (1377)
Q Consensus 1131 -----TrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRa------HRiGQtk~VtVYR 1178 (1377)
+...|.|.=-+.||.||+++.+.-...+.-.-+.+ +|-|++..+..+.
T Consensus 182 ~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~ 240 (242)
T cd00984 182 KRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVELRF 240 (242)
T ss_pred CCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCeeEEEEe
No 397
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=49.87 E-value=2e+02 Score=32.54 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhc---------ccCCcEEEEe---CcccHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEK---------NIWGPFLVVA---PASVLNNWADEISR 507 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~---------~i~gp~LIV~---P~Sll~nW~~Ei~k 507 (1377)
.=|+|+-..|.|||.-++.+++.++.-. ...+++|+++ |...+.+-...+..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 3479999999999999999988877422 1235788888 34444444444433
No 398
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=49.74 E-value=14 Score=49.24 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=75.3
Q ss_pred HhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc-cc----HHHHHHHHHHHCCCCeeEeecCChhhhHH
Q 000642 452 YEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SV----LNNWADEISRFCPDLKTLPYWGGLQERMV 526 (1377)
Q Consensus 452 y~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~-Sl----l~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~ 526 (1377)
|.-..|..+.+..|.|||+-+-..+-+....++. +.+.+|+|. .+ ..-|..-+. .|+++++-..|....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCC--
Confidence 4445677899999999999997666665555555 789999993 33 345766553 3578888777743221
Q ss_pred HhhccCcccccccCCCeeEEEEechhhhh------hhhhhhccceeEEEEcccccccCc
Q 000642 527 LRKNINPKRLYRRDAGFHILITSYQLLVA------DEKYFRRVKWQYMVLDEAQAIKSS 579 (1377)
Q Consensus 527 lrk~~~~k~l~~~~~~f~VvItSYe~l~~------d~~~l~~~~w~~VIlDEAH~iKN~ 579 (1377)
.+ .-...+++|||.+..-. ..+|++. ...+|+||.|.++..
T Consensus 1015 ------~~----~v~~~~~~ittpek~dgi~Rsw~~r~~v~~--v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 ------VK----AVREADIVITTPEKWDGISRSWQTRKYVQS--VSLIVLDEIHLLGED 1061 (1230)
T ss_pred ------hh----heecCceEEcccccccCccccccchhhhcc--ccceeecccccccCC
Confidence 01 11345799999888633 3455553 467999999998764
No 399
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=49.66 E-value=65 Score=37.87 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=36.0
Q ss_pred CcchhHHHHHHHHHHHHhcCC--CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 436 SLKEYQLKGLQWLVNCYEQGL--NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~--nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
.|...|-..+..|.....+|. .++|... |.||+..+..|...+.+.+
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 466778888888888877664 3556554 6899999999999888764
No 400
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=49.44 E-value=35 Score=37.03 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 443 KGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 443 kGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
....|+ +.+.|-+|.-.+|.|||--++|+...+.. ++. +++.+. ...+.++++
T Consensus 39 ~~~~~~----~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~--~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 39 AALEFI----ENGENLILYGPPGTGKTHLAVAIANEAIR-KGY--SVLFIT----ASDLLDELK 91 (178)
T ss_dssp HHH-S-----SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEE----HHHHHHHHH
T ss_pred hcCCCc----ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc--ceeEee----cCceecccc
Confidence 444554 45778899999999999999999888876 333 555553 345555654
No 401
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.96 E-value=78 Score=38.72 Aligned_cols=87 Identities=20% Similarity=0.223 Sum_probs=66.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~ 538 (1377)
+++-|+|.||+---+=+++.++.+ +++|.|+-.--+.||.--..+..-
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEES~~QiklRA~RL~~---------------------------- 144 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEESLQQIKLRADRLGL---------------------------- 144 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCcCHHHHHHHHHHhCC----------------------------
Confidence 679999999998888888888865 488999998889999888777530
Q ss_pred cCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCc
Q 000642 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSS 579 (1377)
Q Consensus 539 ~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~ 579 (1377)
...++.+..+..+-.-...+...+.++||+|=.|.+-++
T Consensus 145 --~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 145 --PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred --CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 112455555555555566777789999999998888554
No 402
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=48.41 E-value=1e+02 Score=30.00 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CCeEEEEec------cchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1072 NHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1072 ghKVLIFSQ------~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
.|+|+||+. +-..-..+..+|...|+.|..+|=....+.|..+........=..||+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 589999975 345567788889999999999886656666666665544333334544
No 403
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=48.40 E-value=46 Score=40.75 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEec-cchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccc
Q 000642 1055 SGKLQTLDILLKRLRAENHRVLLFAQ-MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1133 (1377)
Q Consensus 1055 SgKL~~L~~LL~~Lk~~ghKVLIFSQ-~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrA 1133 (1377)
|.-|.++...+..+.+.|.+||+... |-.+..+++..|...|+.+..+|.+........ ... ++.
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~----~~~-~~t--------- 150 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAA----IKE-PNT--------- 150 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHH----hcc-cCc---------
Confidence 44566776655555566777776655 888999999999999999998887765333222 221 333
Q ss_pred cccccCcCcCCEEEEeCCCCChhhhhHhhhchhccC
Q 000642 1134 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1169 (1377)
Q Consensus 1134 GGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRiG 1169 (1377)
.+||++++=||....+=+.++-|+.
T Consensus 151 -----------k~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 151 -----------KLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred -----------eEEEEeCCCCcccccccHHHHHHHH
Confidence 3478888999987766655554443
No 404
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=48.37 E-value=83 Score=45.54 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=73.8
Q ss_pred hccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcc-cCCcEEEEeCcccHHHHHHHHHHHCCC
Q 000642 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKN-IWGPFLVVAPASVLNNWADEISRFCPD 511 (1377)
Q Consensus 433 l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~-i~gp~LIV~P~Sll~nW~~Ei~kf~p~ 511 (1377)
+...|-+-|..++..++.- ...-.+|---.|.|||-+.-+++..+..... ....++.++|..-... ++... +
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e~--G 1036 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRSA--G 1036 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHhc--C
Confidence 3446899999999877642 1234577888999999887776665532111 1124677889664332 23221 1
Q ss_pred CeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhcc
Q 000642 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFN 591 (1377)
Q Consensus 512 l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~ 591 (1377)
+.. ..+..++... +...... ......-+++|||||-.+-+.. ....+....
T Consensus 1037 i~A----------~TI~s~L~~~----------------~~~~~~~-~~~~~~~~llIVDEaSMv~~~~--m~~Ll~~~~ 1087 (1747)
T PRK13709 1037 VDA----------QTLASFLHDT----------------QLQQRSG-ETPDFSNTLFLLDESSMVGNTD--MARAYALIA 1087 (1747)
T ss_pred cch----------hhHHHHhccc----------------ccccccc-cCCCCCCcEEEEEccccccHHH--HHHHHHhhh
Confidence 110 1111111100 0000000 0011244899999999985443 333344343
Q ss_pred -CCceEEeecCCCC
Q 000642 592 -CRNRLLLTGTPIQ 604 (1377)
Q Consensus 592 -~~~rLlLTGTPIQ 604 (1377)
...|++|-|=+-|
T Consensus 1088 ~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1088 AGGGRAVSSGDTDQ 1101 (1747)
T ss_pred cCCCEEEEecchHh
Confidence 3578999998877
No 405
>PRK08760 replicative DNA helicase; Provisional
Probab=48.23 E-value=93 Score=39.25 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=40.9
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
=.|||--+|.|||.-++.++.+.+..++ .+++++..--...+|...+...
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHHHHHHHHHHh
Confidence 3599999999999999999988875443 4889999888888888877544
No 406
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=48.14 E-value=1.1e+02 Score=36.55 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=33.9
Q ss_pred cchhHHHHHHHHHHHHhcCCCE-EEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nG-ILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
++|+|...-+-+...+..-..+ ++.-..|.|||..+..+...+.+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4677776665555554333333 6889999999999999999888754
No 407
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.02 E-value=27 Score=41.39 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=77.9
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEE--eCcccH--HHHHHHHHHHCC
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVV--APASVL--NNWADEISRFCP 510 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV--~P~Sll--~nW~~Ei~kf~p 510 (1377)
++..+.|..-| |+ +.+.+.+.|++-++|.|||-...|++..+.... +.+.| +|--.+ .||...+.+-.
T Consensus 126 gt~~~~~~ayL-~~--~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~----rivtIEdt~E~~~~~~n~~~l~~r~~- 197 (312)
T COG0630 126 GTISPEQAAYL-WL--AIEARKSIIICGGTASGKTTLLNALLDFIPPEE----RIVTIEDTPELKLPHENWVQLVTREG- 197 (312)
T ss_pred CCCCHHHHHHH-HH--HHHcCCcEEEECCCCCCHHHHHHHHHHhCCchh----cEEEEeccccccCCCCCEEEEEecCC-
Confidence 67777777765 44 346788999999999999999999987765432 22222 111111 24432221100
Q ss_pred CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc
Q 000642 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF 590 (1377)
Q Consensus 511 ~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l 590 (1377)
..+..=++.++. ..+..+.+.+++|++|.+.- ..+..++.+
T Consensus 198 ------------------------------~~~~~~v~~~dl----l~aalR~rPd~IivgEvrg~-----e~~~~~~a~ 238 (312)
T COG0630 198 ------------------------------ESGSSEVSLEDL----LRAALRQRPDYIIVGELRGR-----EAFVLFQAM 238 (312)
T ss_pred ------------------------------CCCccccCHHHH----HHHHHhcCCCeEEEeeeecH-----HHHHHHHHH
Confidence 000011111111 23344678999999998533 345566677
Q ss_pred cCCceEEeecCCCCCCHHHHHHHHH
Q 000642 591 NCRNRLLLTGTPIQNNMAELWALLH 615 (1377)
Q Consensus 591 ~~~~rLlLTGTPIQNsm~ELwsLL~ 615 (1377)
.+-| .-=.|.+..++..+..-|.
T Consensus 239 ~tGh--~~isT~ha~s~~~~~~rl~ 261 (312)
T COG0630 239 QTGH--GTISTIHADSPELVLDRLT 261 (312)
T ss_pred hcCC--CceeEEecCCHHHHHHHHh
Confidence 7777 5556788888877665544
No 408
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=48.02 E-value=83 Score=41.83 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-cccH---HHHHHHHHHHCCCCeeEee-cC-ChhhhHHHh
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-ASVL---NNWADEISRFCPDLKTLPY-WG-GLQERMVLR 528 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-~Sll---~nW~~Ei~kf~p~l~vl~y-~G-s~~~rk~lr 528 (1377)
..|.|.-.-+|=|||+.++.-. ||..-.+ +.+.||+. -.+. ..|...+-.|. ++.|-+- .+ ++.+++...
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~-ylnaL~g--kgVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY 168 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPA-YLNALAG--KGVHVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAY 168 (822)
T ss_pred cCCceeeeecCCchHHHHHHHH-HHHhcCC--CCcEEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHH
Confidence 4588999999999999987543 2222222 23455554 4443 35999999987 4554332 22 223232211
Q ss_pred hccCcccccccC--CCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCC
Q 000642 529 KNINPKRLYRRD--AGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNN 606 (1377)
Q Consensus 529 k~~~~k~l~~~~--~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNs 606 (1377)
. -.-.|.-. -+||++--+ ++.+....+++ ...+.|+||+--|- --.++-.|.+|| |...+
T Consensus 169 ~---~DItY~TnnElGFDYLRDN--m~~~~ee~vqr-~~~faIvDEvDSIL-----------IDEARtPLiISG-~~~~~ 230 (822)
T COG0653 169 A---CDITYGTNNELGFDYLRDN--MVTSQEEKVQR-GLNFAIVDEVDSIL-----------IDEARTPLIISG-PAEDS 230 (822)
T ss_pred h---cCceeccccccCcchhhhh--hhccHHHhhhc-cCCeEEEcchhhee-----------eeccccceeeec-ccccC
Confidence 1 01112222 234333222 12222222222 67899999986552 125677899999 99988
Q ss_pred HHHHHHHHHhh
Q 000642 607 MAELWALLHFI 617 (1377)
Q Consensus 607 m~ELwsLL~FL 617 (1377)
......+..|+
T Consensus 231 ~~~Y~~~~~~v 241 (822)
T COG0653 231 SELYKKVDDLV 241 (822)
T ss_pred chHHHHHHHHH
Confidence 65555555555
No 409
>PHA02518 ParA-like protein; Provisional
Probab=47.95 E-value=93 Score=33.90 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=28.9
Q ss_pred eCCCCcHHHHHHHHHHHHHHhcccCCcEEEE--eCcccHHHHHH
Q 000642 462 DEMGLGKTIQAMAFLAHLAEEKNIWGPFLVV--APASVLNNWAD 503 (1377)
Q Consensus 462 DEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV--~P~Sll~nW~~ 503 (1377)
.-=|.|||..++.+..+|+.. + .++|+| -|...+..|..
T Consensus 8 ~KGGvGKTT~a~~la~~la~~-g--~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 8 QKGGAGKTTVATNLASWLHAD-G--HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhC-C--CeEEEEeCCCCCChHHHHH
Confidence 344899999999999888864 2 366666 37777778864
No 410
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=47.60 E-value=77 Score=37.47 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
++.-+-|.|||..+.++...+.+.
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCC
Confidence 789999999999999999888654
No 411
>CHL00095 clpC Clp protease ATP binding subunit
Probab=47.34 E-value=69 Score=43.22 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
..|-||.-++|.|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34779999999999999988766654
No 412
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=47.27 E-value=92 Score=41.49 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
..|-||.-++|.|||..+-++...+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999998887777654
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.07 E-value=3.1e+02 Score=28.99 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
++.-..|.|||..+..+...++..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 567789999999999999888765
No 414
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=46.95 E-value=46 Score=43.02 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred ceeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHHHH
Q 000642 564 KWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWA 612 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~ELws 612 (1377)
++..+|+|=-|-|--..---...|+.-++++.+.| |.+.-||.
T Consensus 565 ~~aIlvvdImhGlepqtiESi~lLR~rktpFivAL------NKiDRLYg 607 (1064)
T KOG1144|consen 565 DLAILVVDIMHGLEPQTIESINLLRMRKTPFIVAL------NKIDRLYG 607 (1064)
T ss_pred ceEEEEeehhccCCcchhHHHHHHHhcCCCeEEee------hhhhhhcc
Confidence 67788999888875443333444455577777777 66666654
No 415
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=46.88 E-value=52 Score=43.56 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=17.9
Q ss_pred CEEEEeCCCCcHHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAH 478 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~ 478 (1377)
+.||.-++|.|||..+-++...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999877766543
No 416
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.68 E-value=46 Score=42.58 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHhcCCCEEEEeCCCCcHHHHHHHHH
Q 000642 448 LVNCYEQGLNGILADEMGLGKTIQAMAFL 476 (1377)
Q Consensus 448 L~~ly~~g~nGILADEMGLGKTIQsIAlL 476 (1377)
|++....+.-.|+.-|+|.|||-|.--+|
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~QyL 392 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLAQYL 392 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhHHHH
Confidence 33444445557899999999999966544
No 417
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=46.31 E-value=1.1e+02 Score=34.28 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=24.0
Q ss_pred ceeEEEEcccccccCchhHH---HHHHHhc-cCCceEEeec
Q 000642 564 KWQYMVLDEAQAIKSSNSIR---WKTLLSF-NCRNRLLLTG 600 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~r---~kal~~l-~~~~rLlLTG 600 (1377)
..+++|||..|.+.+..... +..+..+ ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 67999999999998764322 2222222 3456777777
No 418
>PF12622 NpwBP: mRNA biogenesis factor
Probab=46.14 E-value=9.4 Score=32.39 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=9.5
Q ss_pred EEEeCCCCChh
Q 000642 1146 VIFYESDWNPT 1156 (1377)
Q Consensus 1146 VIfyDsdWNPt 1156 (1377)
=||||+.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 38999999995
No 419
>PRK08006 replicative DNA helicase; Provisional
Probab=46.09 E-value=1.2e+02 Score=38.19 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
|-=.|||--+|+|||.-++.++.+.+...+ .|++++..---..++..-+-
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCHHHHHHHHH
Confidence 333599999999999999999888775433 48899988777777666554
No 420
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=45.99 E-value=1e+02 Score=28.34 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHH
Q 000642 198 GKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQREVKMKVSRSLKL-MRGAAIRTRKLA 260 (1377)
Q Consensus 198 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~ 260 (1377)
.+-|..+. -.+--+.+-|.+.+..++..++|+|..|+.-........+|. .|+...|-++|+
T Consensus 10 k~h~d~lL-~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~ 72 (73)
T smart00573 10 KQHWDHLL-EEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLA 72 (73)
T ss_pred CchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777 678889999999999999999999999998877666555554 444445555543
No 421
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=45.85 E-value=46 Score=42.18 Aligned_cols=27 Identities=33% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
+.|.+|.-.+|.|||..+-++..++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 446688999999999998888877753
No 422
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=45.35 E-value=2.9e+02 Score=33.77 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=77.6
Q ss_pred CcchhHHHHHHHHHHHHhc--CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCccc---HHHHHHHHHHHCC
Q 000642 436 SLKEYQLKGLQWLVNCYEQ--GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASV---LNNWADEISRFCP 510 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~--g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sl---l~nW~~Ei~kf~p 510 (1377)
.-|++|+.-+.-|..--.. ..+-+|--..|.|||-.+-.++.++ . .++..|++.-+ -.-|+.=+.+-.
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~~~~- 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILNKSQ- 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHHHhc-
Confidence 3699999999777642221 2233788999999999999998877 1 35555665322 223444433321
Q ss_pred CCeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc
Q 000642 511 DLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF 590 (1377)
Q Consensus 511 ~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l 590 (1377)
...+-|...+- .... ...|+-.+..|+...+ +-.--++|+|-|..++.........+..+
T Consensus 82 ---~~d~dg~~~~~--~~en---------~~d~i~~l~q~~~~t~------~d~~~~liLDnad~lrD~~a~ll~~l~~L 141 (438)
T KOG2543|consen 82 ---LADKDGDKVEG--DAEN---------FSDFIYLLVQWPAATN------RDQKVFLILDNADALRDMDAILLQCLFRL 141 (438)
T ss_pred ---cCCCchhhhhh--HHHH---------HHHHHHHHHhhHHhhc------cCceEEEEEcCHHhhhccchHHHHHHHHH
Confidence 11111111100 0000 0011111111111111 01345799999999998888887777665
Q ss_pred -----cCCceEEeecCCCCC
Q 000642 591 -----NCRNRLLLTGTPIQN 605 (1377)
Q Consensus 591 -----~~~~rLlLTGTPIQN 605 (1377)
...-+++++.++..+
T Consensus 142 ~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 142 YELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHhCCCceEEEEeccccHH
Confidence 235568888887643
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.33 E-value=1.3e+02 Score=37.15 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=32.2
Q ss_pred hccceeEEEEcccccccCchhHHHHHHHhc--------cCCceEEeecCCCCCCHHHHHHHHHhh
Q 000642 561 RRVKWQYMVLDEAQAIKSSNSIRWKTLLSF--------NCRNRLLLTGTPIQNNMAELWALLHFI 617 (1377)
Q Consensus 561 ~~~~w~~VIlDEAH~iKN~~S~r~kal~~l--------~~~~rLlLTGTPIQNsm~ELwsLL~FL 617 (1377)
....+++||||=+-+.-... .....+..+ .....|+|++|==++.+.+.......+
T Consensus 296 ~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~ 359 (432)
T PRK12724 296 ARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESL 359 (432)
T ss_pred HhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 34578999999876653222 222222221 224568899997776666655544443
No 424
>PRK08840 replicative DNA helicase; Provisional
Probab=44.69 E-value=1.4e+02 Score=37.62 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=38.5
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
.|-=.|||--+|+|||.-++-++.+.+..++ .|++++..---..++..-+-
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~~ql~~Rll 266 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPAEQLMMRML 266 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHH
Confidence 3444599999999999999888877765443 48899988777777766653
No 425
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.39 E-value=53 Score=42.05 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC-------cccHHHHHHHH-HHHCCCCeeEeecCChhhhHHHhhc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP-------ASVLNNWADEI-SRFCPDLKTLPYWGGLQERMVLRKN 530 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P-------~Sll~nW~~Ei-~kf~p~l~vl~y~Gs~~~rk~lrk~ 530 (1377)
|+--|+|.|||-| +=.||.+.+-..+.-+|=|. .|+..--.+|+ .+.....-.-+-+-+...-+..-++
T Consensus 284 iI~GeTGSGKTTQ---iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvlKY 360 (902)
T KOG0923|consen 284 IIVGETGSGKTTQ---IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVLKY 360 (902)
T ss_pred EEEcCCCCCcccc---ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcceeeee
Q ss_pred cCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhc----cCCceEEeecCCCCCC
Q 000642 531 INPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSF----NCRNRLLLTGTPIQNN 606 (1377)
Q Consensus 531 ~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l----~~~~rLlLTGTPIQNs 606 (1377)
+...-+ +.--.....--.+.+|||||||.=--..--.+-.+..+ ..-..|+.|||
T Consensus 361 MTDGmL----------------lREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT----- 419 (902)
T KOG0923|consen 361 MTDGML----------------LREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSAT----- 419 (902)
T ss_pred ecchhH----------------HHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccc-----
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHH
Q 000642 607 MAELWALLHFIMPTLFDSHEQFNEWF 632 (1377)
Q Consensus 607 m~ELwsLL~FL~P~lFds~~eF~ewF 632 (1377)
.+.+.|..+|
T Consensus 420 ----------------~DAekFS~fF 429 (902)
T KOG0923|consen 420 ----------------MDAEKFSAFF 429 (902)
T ss_pred ----------------cCHHHHHHhc
No 426
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=43.97 E-value=83 Score=43.08 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=5.0
Q ss_pred cchhHHHHH
Q 000642 75 LDLGSLAAM 83 (1377)
Q Consensus 75 ~~~~~~~~~ 83 (1377)
.|+-||+.+
T Consensus 224 SDVWSLG~I 232 (1021)
T PTZ00266 224 SDMWALGCI 232 (1021)
T ss_pred hHHHHHHHH
Confidence 466665533
No 427
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=43.79 E-value=1.3e+02 Score=37.39 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
|-=.+|+-.+|.|||.-++.++.+.+..++ .++|++..--...+....+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHHHHHHHH
Confidence 333589999999999999999988876444 4788888765555544444
No 428
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.27 E-value=5.5e+02 Score=34.48 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHHH
Q 000642 194 MEKIGKVWVNIVRKDIPKYHKTFFTFHKKQQIDAKRFAETCQR 236 (1377)
Q Consensus 194 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1377)
.++..+-|..|.+....-.....-..+....+-++|++..|+.
T Consensus 1035 ~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~ 1077 (1189)
T KOG1265|consen 1035 VNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQT 1077 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999998888888777888888888888888776653
No 429
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=42.48 E-value=83 Score=41.93 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVL 498 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll 498 (1377)
+.+-+|.-..|.|||..+-++...+ ..+++.|....++
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~ 249 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIM 249 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHh
Confidence 4456889999999997766654333 2356655544443
No 430
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=42.48 E-value=28 Score=39.92 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHH
Q 000642 444 GLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH 478 (1377)
Q Consensus 444 GL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~ 478 (1377)
++.+|..+ ..|..+++--+.|.|||..+-.++..
T Consensus 6 ~id~~~~i-~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 6 VVDLFAPI-GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred heeeeccc-CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34444443 24666777778999999654443333
No 431
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.04 E-value=52 Score=42.15 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=71.1
Q ss_pred CCcEEEecCCCCHHHHHHHHHHhcc-CCCceEEEEeccccccccCcCcCCEEEEe----CCCCChhh-----------hh
Q 000642 1096 KYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTAADTVIFY----ESDWNPTL-----------DL 1159 (1377)
Q Consensus 1096 g~~y~rLDGstk~edR~~~V~~Fq~-~~di~VfLLSTrAGGlGINLTaAdtVIfy----DsdWNPt~-----------d~ 1159 (1377)
++.++-|....+.+-. ..=||. .++++-.+++|..+-..|...+--.||=. -..+||.+ -.
T Consensus 597 ~L~vlpiYSQLp~dlQ---~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQ---AKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhh---hhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5666777766663332 234774 45676679999999888888877777631 12456533 35
Q ss_pred HhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHH---HHHHHHHHHHH
Q 000642 1160 QAMDRAHRLGQTKDVTVYRLICKETVEEKILQRA---SQKNTVQQLVM 1204 (1377)
Q Consensus 1160 QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra---~~K~~l~~~Vi 1204 (1377)
+|--|++|-|.|.+-+.|||.|+.+....|+.-- .+.-++.++|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 6667888888899999999999999888776421 23344555554
No 432
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.73 E-value=1.4e+02 Score=38.93 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
-|+.-+.|.|||-.+..+...+.+.
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4789999999999888777777653
No 433
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.28 E-value=1.1e+02 Score=29.15 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.4
Q ss_pred CCeEEEEec------cchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 000642 1072 NHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVR 1116 (1377)
Q Consensus 1072 ghKVLIFSQ------~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~ 1116 (1377)
+++|+||+. +-..-..+.++|...|+.|..+|=....+-|..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 589999987 445667888899999999999885555444554444
No 434
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=41.16 E-value=1.2e+02 Score=35.56 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.3
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHL 479 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L 479 (1377)
+.+|.-..|.|||.-+.++...+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999998877765443
No 435
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=40.85 E-value=93 Score=32.44 Aligned_cols=86 Identities=24% Similarity=0.211 Sum_probs=57.0
Q ss_pred eEEEEeccchHHHHHHHHHHhCCC--cEEEecCCCCHHHHHHHHHHhccCCCceEEEEeccccccccCcCcCCEEEEeCC
Q 000642 1074 RVLLFAQMTKMLNILEDYMNYRKY--RYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYES 1151 (1377)
Q Consensus 1074 KVLIFSQ~t~mLDiLee~L~~~g~--~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTrAGGlGINLTaAdtVIfyDs 1151 (1377)
.|=|+||.-.+...|-+++..+|+ .++.=-|....-+=.++++.|.+||+++|+++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 466899999999999999988855 455556766556778899999999999997754 444
Q ss_pred CCChhhhhHhhhchhccCCcCcEEEEEEE
Q 000642 1152 DWNPTLDLQAMDRAHRLGQTKDVTVYRLI 1180 (1377)
Q Consensus 1152 dWNPt~d~QAmdRaHRiGQtk~VtVYRLI 1180 (1377)
-=||.....++-|+.|- |||.+|+-=
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 45788888888887764 999998643
No 436
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=40.81 E-value=3.1e+02 Score=29.56 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=69.5
Q ss_pred cccchHHH-HHHHHHHHhhC----CCeEEEEeccchHHHH----HHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCC
Q 000642 1053 TDSGKLQT-LDILLKRLRAE----NHRVLLFAQMTKMLNI----LEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSD 1123 (1377)
Q Consensus 1053 ~~SgKL~~-L~~LL~~Lk~~----ghKVLIFSQ~t~mLDi----Lee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~d 1123 (1377)
+.+||-.. +..++..+... +.+|||.+.....+.- +..+....++.+..+.|+.+..++... +.. +
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---LKR--G 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcC--C
Confidence 67999644 56666666543 5689999987665543 445555568888999998886555433 332 3
Q ss_pred ceEEEEeccc----c-ccccCcCcCCEEEEeCCCC--ChhhhhHhhhchhccCCcCcEEEEEEEeCCCHHHHHHHHH
Q 000642 1124 IFVFLLSTRA----G-GLGINLTAADTVIFYESDW--NPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRA 1193 (1377)
Q Consensus 1124 i~VfLLSTrA----G-GlGINLTaAdtVIfyDsdW--NPt~d~QAmdRaHRiGQtk~VtVYRLItkgTIEErI~~ra 1193 (1377)
..|++.++.. . .--.++..-+.+|+=+.+. +.....+...-..++.+ .+..+++.-|+...+...+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~----~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK----DRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc----ccEEEEEeccCCHHHHHHH
Confidence 4454444211 0 1114555556655433232 11111112222223332 4455566666655554443
No 437
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=40.72 E-value=1.1e+02 Score=41.36 Aligned_cols=88 Identities=17% Similarity=0.315 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEecc---chHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1056 GKLQTLDILLKRLRAENHRVLLFAQM---TKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1056 gKL~~L~~LL~~Lk~~ghKVLIFSQ~---t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
.-+..+.+++++| |.=.|||.+- ....+-|.+||..+|++..-++- ..+..+++|.. +++.|++-...
T Consensus 322 ~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~-GeidvLVGvAs 392 (1187)
T COG1110 322 ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEE-GEVDVLVGVAS 392 (1187)
T ss_pred ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhcc-CceeEEEEecc
Confidence 5566677788877 5557999998 78899999999999999877764 23678999987 88888554322
Q ss_pred ---ccccccCcCc-CCEEEEeCCC
Q 000642 1133 ---AGGLGINLTA-ADTVIFYESD 1152 (1377)
Q Consensus 1133 ---AGGlGINLTa-AdtVIfyDsd 1152 (1377)
..=.||+|.. .-.+|||..|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 2446999965 8999999987
No 438
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=40.59 E-value=2.1e+02 Score=33.66 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=23.8
Q ss_pred hhhhhccceeEEEEcccccccCch-hHHHHHHHhccCCce-EEeecCCCCCC
Q 000642 557 EKYFRRVKWQYMVLDEAQAIKSSN-SIRWKTLLSFNCRNR-LLLTGTPIQNN 606 (1377)
Q Consensus 557 ~~~l~~~~w~~VIlDEAH~iKN~~-S~r~kal~~l~~~~r-LlLTGTPIQNs 606 (1377)
...+....++.||+||+-.+.... +.....+..-..... ++.|.||-.++
T Consensus 90 ~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 90 GDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp HHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred cccccccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 345666889999999988885532 222222222233333 25555564443
No 439
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.68 E-value=67 Score=42.78 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=21.6
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
...|-||--+.|.|||..+-++...+.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999877765544
No 440
>CHL00176 ftsH cell division protein; Validated
Probab=39.42 E-value=1.3e+02 Score=39.25 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAH 478 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~ 478 (1377)
.|.+|.-++|.|||..+=++...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998887543
No 441
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=38.57 E-value=1.4e+02 Score=40.75 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=64.1
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN----YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~----~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.|||-.+....+......|.+|+|-+..+....-..+.+. ..+++...|.|.++..++..++..+.. +.+.| +
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dI-V 558 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDI-L 558 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceE-E
Confidence 67999876544333333457899999998887776555544 346788899999999999999998886 34555 4
Q ss_pred Eecc-ccccccCcCcCCEEEE
Q 000642 1129 LSTR-AGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1129 LSTr-AGGlGINLTaAdtVIf 1148 (1377)
+.|- ...-.+.+..-..||+
T Consensus 559 IGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EchHHHhhCCCCcccCCEEEe
Confidence 4443 3333455555555555
No 442
>PRK05973 replicative DNA helicase; Provisional
Probab=38.45 E-value=70 Score=36.48 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHH
Q 000642 447 WLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 447 WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~ 506 (1377)
++..-+..|.--+|+-.+|.|||+-++-++.+.+.. + .+++++.---.-.+-.+.+.
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-G--e~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-G--RTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C--CeEEEEEEeCCHHHHHHHHH
Confidence 333333345556899999999999999999887754 3 47788875444444333333
No 443
>PRK07004 replicative DNA helicase; Provisional
Probab=38.08 E-value=1.4e+02 Score=37.42 Aligned_cols=49 Identities=24% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
|-=-|||--+|+|||.-++.++.+.+...+ .|++++..--.-.++..-+
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHH
Confidence 333599999999999999999988875444 4888888877777766655
No 444
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.05 E-value=73 Score=36.69 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe
Q 000642 441 QLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~ 493 (1377)
..+-+.-+......|.+-+|-.++|.|||..+-++...+ + .|++.|+
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g--~~~~~i~ 53 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----D--RPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----C--CCEEEEe
Confidence 334444455555668888999999999999998876533 2 4777664
No 445
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=38.03 E-value=1.4e+02 Score=36.34 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=24.1
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
|+.---|.|||..++..+...+....-...+||+.|
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~ 40 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARK 40 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEeh
Confidence 444557999999988766655554312256788877
No 446
>PRK10867 signal recognition particle protein; Provisional
Probab=37.98 E-value=1.8e+02 Score=36.19 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=29.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc----ccHHHHHH
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----SVLNNWAD 503 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~----Sll~nW~~ 503 (1377)
++.-..|.|||..+.-+..++....+ .++++|+=- ....||..
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHH
Confidence 67789999999999999988876533 355555532 33456643
No 447
>PRK05748 replicative DNA helicase; Provisional
Probab=37.76 E-value=1.2e+02 Score=37.71 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=38.5
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
.|--.|||--+|.|||.-++.++.+.+..++ .+++++..--.-.+....+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCHHHHHHHH
Confidence 3444599999999999999999988875444 4888988766666666655
No 448
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=37.63 E-value=79 Score=37.72 Aligned_cols=10 Identities=30% Similarity=0.581 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 000642 295 LREAKRQQQR 304 (1377)
Q Consensus 295 ~~e~~rq~rk 304 (1377)
++|.+||+||
T Consensus 312 eKe~kk~~rk 321 (321)
T PF07946_consen 312 EKERKKEQRK 321 (321)
T ss_pred HHHHHHhccC
Confidence 3444555554
No 449
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=37.04 E-value=1.6e+02 Score=32.60 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~ 538 (1377)
++.-.|+.|||..-|-.+....+.+ .+++|..|+ |...+..-.|....|
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~---------iD~R~~~~~V~Sr~G------------------- 56 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPA---------IDTRYGVGKVSSRIG------------------- 56 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC---CeEEEEecc---------cccccccceeeeccC-------------------
Q ss_pred cCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhccC-CceEEeec
Q 000642 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNC-RNRLLLTG 600 (1377)
Q Consensus 539 ~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~~-~~rLlLTG 600 (1377)
...+.+++=..-+.+..-...-.....+.|.|||||-+ .....+..-.-... ..++++.|
T Consensus 57 ~~~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~--~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 57 LSSEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFF--DEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred CcccceecCChHHHHHHHHhcccCCCcCEEEEehhHhC--CHHHHHHHHHHHhhcCCEEEEec
No 450
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=37.03 E-value=58 Score=40.03 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~ 502 (1377)
+.|.+|.-.+|.|||..+=++...+ ..+++.|.+..++..|.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYL 220 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhc
Confidence 4567899999999999887765443 24667776655554443
No 451
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.59 E-value=72 Score=39.25 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccccCCCee
Q 000642 465 GLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFH 544 (1377)
Q Consensus 465 GLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~ 544 (1377)
|.|||-++.=|..||.. ++. .+|+||--.-..-=.+.++.......|-+|.-.....-+
T Consensus 110 GsGKTTt~~KLA~~lkk-~~~--kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv------------------ 168 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK-KGK--KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPV------------------ 168 (451)
T ss_pred CCChHhHHHHHHHHHHH-cCC--ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHH------------------
Q ss_pred EEEEechhhhhhhhhhhccceeEEEEcccccc
Q 000642 545 ILITSYQLLVADEKYFRRVKWQYMVLDEAQAI 576 (1377)
Q Consensus 545 VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~i 576 (1377)
++...-..+++...+|+||||=|-++
T Consensus 169 ------~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 169 ------EIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred ------HHHHHHHHHHHHcCCCEEEEeCCCcc
No 452
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=36.47 E-value=44 Score=43.97 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=41.4
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCccc
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASV 497 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sl 497 (1377)
|-+-|.+++.+- .| ..++--.+|.|||.+.++-++||.+..++ ...+|+|+...-
T Consensus 3 Ln~~Q~~av~~~-----~g-~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~k 58 (672)
T PRK10919 3 LNPGQQQAVEFV-----TG-PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNK 58 (672)
T ss_pred CCHHHHHHHhCC-----CC-CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHH
Confidence 678899998652 23 45566679999999999999999976554 345888887443
No 453
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=36.16 E-value=45 Score=34.56 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHH
Q 000642 447 WLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLA 480 (1377)
Q Consensus 447 WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~ 480 (1377)
.++.....|.--+|.-++|.|||.-+=+++..+-
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4455555565667999999999988877777764
No 454
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=36.14 E-value=1.1e+02 Score=38.05 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceeEEEEcccccccCchhHHHHHHHhc-cCCceEEeecCCCCCCHHHHHHHHHhhcCCC
Q 000642 564 KWQYMVLDEAQAIKSSNSIRWKTLLSF-NCRNRLLLTGTPIQNNMAELWALLHFIMPTL 621 (1377)
Q Consensus 564 ~w~~VIlDEAH~iKN~~S~r~kal~~l-~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~l 621 (1377)
-+|+|.+||+|-+ +++ .+..+..+ +...||.-.+ .||.+|.++=|+.+
T Consensus 295 ~yD~ilIDE~QDF--P~~-F~~Lcf~~tkd~KrlvyAy-------DelQnls~~~m~pp 343 (660)
T COG3972 295 AYDYILIDESQDF--PQS-FIDLCFMVTKDKKRLVYAY-------DELQNLSNVKMRPP 343 (660)
T ss_pred cccEEEecccccC--CHH-HHHHHHHHhcCcceEEEeh-------HhhhcccccCCCCH
Confidence 4799999999998 444 34555444 4556666655 57777888877763
No 455
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.13 E-value=1.8e+02 Score=36.26 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=25.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEe
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVA 493 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~ 493 (1377)
-+++-..|.|||..+.-+..++....+ .++++|+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEe
Confidence 478889999999999999888764333 2455554
No 456
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.03 E-value=3e+02 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=32.3
Q ss_pred hhhccceeEEEEcccccccC----chhHHHHHHHhccCCceEEeecCCCCCCHHHH
Q 000642 559 YFRRVKWQYMVLDEAQAIKS----SNSIRWKTLLSFNCRNRLLLTGTPIQNNMAEL 610 (1377)
Q Consensus 559 ~l~~~~w~~VIlDEAH~iKN----~~S~r~kal~~l~~~~rLlLTGTPIQNsm~EL 610 (1377)
.+....+++|||||.=..-+ +.......+..-...--++|||-=....+-|+
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 34556899999999876632 22334444444444557999997655444443
No 457
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.99 E-value=1e+02 Score=37.04 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=77.1
Q ss_pred CcchhHHHHHHHHHH--------------HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHH-H
Q 000642 436 SLKEYQLKGLQWLVN--------------CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN-N 500 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~--------------ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~-n 500 (1377)
.|+|-=++|+--|-. |.+...|-|--..-|.|||--=...|..-.......--.+-+||.-=+. |
T Consensus 96 ~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q 175 (477)
T KOG0332|consen 96 RLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQ 175 (477)
T ss_pred CCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHH
Confidence 466666666644421 1123344455567899999643222211111111112245558854333 3
Q ss_pred H---HHHHHHHCCCCeeEe-ecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhc---cceeEEEEccc
Q 000642 501 W---ADEISRFCPDLKTLP-YWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRR---VKWQYMVLDEA 573 (1377)
Q Consensus 501 W---~~Ei~kf~p~l~vl~-y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~---~~w~~VIlDEA 573 (1377)
- ..|+-+|+ ++++.. +-|+...| ...-.-+|+|-|..++..-...|+. -+....|+|||
T Consensus 176 ~~eVv~eMGKf~-~ita~yair~sk~~r-------------G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 176 TGEVVEEMGKFT-ELTASYAIRGSKAKR-------------GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred HHHHHHHhcCce-eeeEEEEecCccccc-------------CCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 2 33344555 444332 22331111 1112347899888888665443333 35788999999
Q ss_pred ccccCchhH---HHHHHHhc-cCCceEEeecC
Q 000642 574 QAIKSSNSI---RWKTLLSF-NCRNRLLLTGT 601 (1377)
Q Consensus 574 H~iKN~~S~---r~kal~~l-~~~~rLlLTGT 601 (1377)
..+-+.+.- -.+....+ .....++.|+|
T Consensus 242 D~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 242 DVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred hhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 998765411 12222333 35567888887
No 458
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=35.89 E-value=1.2e+02 Score=37.38 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEI 505 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei 505 (1377)
|-=.|||-.+|.|||.-++.++.+++...+ .|++++..-.-..++..-+
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~~l~~Rl 242 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAEQLGERL 242 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHHHHHHHH
Confidence 334599999999999999999988874433 4889998665555555544
No 459
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=35.50 E-value=61 Score=41.03 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCC---CEEEEeCCCCcHHHHHHHHHHHHHHhc
Q 000642 441 QLKGLQWLVNCYEQGL---NGILADEMGLGKTIQAMAFLAHLAEEK 483 (1377)
Q Consensus 441 QlkGL~WL~~ly~~g~---nGILADEMGLGKTIQsIAlLa~L~e~~ 483 (1377)
|..-+.-|.+...++. .-++.-.=|.|||-.+=-+...|-+..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 3344444544444443 236777889999998877777776654
No 460
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.27 E-value=2.1e+02 Score=32.46 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHHHHHhcccCCcEEEEe--CcccHHHHHH
Q 000642 464 MGLGKTIQAMAFLAHLAEEKNIWGPFLVVA--PASVLNNWAD 503 (1377)
Q Consensus 464 MGLGKTIQsIAlLa~L~e~~~i~gp~LIV~--P~Sll~nW~~ 503 (1377)
=|.|||..++.+..+++.. + .+++||= |...+..|..
T Consensus 11 GGvGKTT~a~nLA~~la~~-G--~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASD-G--KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhC-C--CcEEEEeCCCCCCHHHHHH
Confidence 3889999999999998865 2 3666662 6666788864
No 461
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=35.12 E-value=76 Score=41.65 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccC-CcEEEEeC-cccHHHHHHHHHHHC
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIW-GPFLVVAP-ASVLNNWADEISRFC 509 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~-gp~LIV~P-~Sll~nW~~Ei~kf~ 509 (1377)
|-+-|.+++.+- +.+.++---.|.|||-..+.-++++....++. ..+|+|+. .....+-.+.+.+..
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 667898888642 33566677899999999999999999765542 34677665 555555666665543
No 462
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.81 E-value=1.5e+02 Score=36.26 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=26.6
Q ss_pred eeEEEEcccccccCchhHHHHHHHhccCCceEEeecCCCCCCHHHH
Q 000642 565 WQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAEL 610 (1377)
Q Consensus 565 w~~VIlDEAH~iKN~~S~r~kal~~l~~~~rLlLTGTPIQNsm~EL 610 (1377)
--+++|||.|++- .++. .+++-.--...+.|-|+-..|---+|
T Consensus 105 ~tiLflDEIHRfn--K~QQ-D~lLp~vE~G~iilIGATTENPsF~l 147 (436)
T COG2256 105 RTILFLDEIHRFN--KAQQ-DALLPHVENGTIILIGATTENPSFEL 147 (436)
T ss_pred ceEEEEehhhhcC--hhhh-hhhhhhhcCCeEEEEeccCCCCCeee
Confidence 3568999999993 3333 34444455566666666666654444
No 463
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=34.71 E-value=24 Score=43.00 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=35.0
Q ss_pred cCCceEEeecCCCCCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhh
Q 000642 591 NCRNRLLLTGTPIQNNMAELWALLHFIMPTLF--DSHEQFNEWFSK 634 (1377)
Q Consensus 591 ~~~~rLlLTGTPIQNsm~ELwsLL~FL~P~lF--ds~~eF~ewFsk 634 (1377)
+.++..|+|||||-|.+.|.+++-.++.++.. --..+|..|.+.
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ergl~~fd~wast 517 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALYERGLHEFDAWAST 517 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHHHhhhhhhhhHHHH
Confidence 56788999999999999999999999988643 234567777653
No 464
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=34.62 E-value=28 Score=45.23 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=46.8
Q ss_pred hccCC-CceEEEEeccccccccCcCcCCEEE--------EeCC---------CC-ChhhhhHhhhchhccCCcCcEEEEE
Q 000642 1118 FQHRS-DIFVFLLSTRAGGLGINLTAADTVI--------FYES---------DW-NPTLDLQAMDRAHRLGQTKDVTVYR 1178 (1377)
Q Consensus 1118 Fq~~~-di~VfLLSTrAGGlGINLTaAdtVI--------fyDs---------dW-NPt~d~QAmdRaHRiGQtk~VtVYR 1178 (1377)
|..-| +.+..++||.++-..|.+.+.-+|| .||+ +| .-+.-.||-|||+|+| +-|.||
T Consensus 623 F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYR 699 (1172)
T KOG0926|consen 623 FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYR 699 (1172)
T ss_pred ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceee
Confidence 55533 5677899999999999998888887 4555 45 4455668888887776 679999
Q ss_pred EEeC
Q 000642 1179 LICK 1182 (1377)
Q Consensus 1179 LItk 1182 (1377)
|++.
T Consensus 700 LYSS 703 (1172)
T KOG0926|consen 700 LYSS 703 (1172)
T ss_pred hhhh
Confidence 9875
No 465
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.54 E-value=92 Score=37.73 Aligned_cols=97 Identities=14% Similarity=0.294 Sum_probs=51.2
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHCCCCeeEeecCChhhhHHHhhccCcccccc
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYR 538 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~l~vl~y~Gs~~~rk~lrk~~~~k~l~~ 538 (1377)
.++-=-|.|||-.+--+..|+.. .+ |++ .+||--.-..---+.+..+....+ ++|+|+..+-
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kk-kG-~K~-~LvcaDTFRagAfDQLkqnA~k~~-iP~ygsyte~-------------- 166 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKK-KG-YKV-ALVCADTFRAGAFDQLKQNATKAR-VPFYGSYTEA-------------- 166 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHh-cC-Cce-eEEeecccccchHHHHHHHhHhhC-CeeEeccccc--------------
Confidence 34555799999877776666653 33 445 555543222222222222222222 3344432111
Q ss_pred cCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhH
Q 000642 539 RDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSI 582 (1377)
Q Consensus 539 ~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~ 582 (1377)
.+. .......+-|++-+|++||+|-+-+.+-..|.
T Consensus 167 --dpv-------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 167 --DPV-------KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred --chH-------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 111 11233456678889999999988887766554
No 466
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=34.40 E-value=3.8e+02 Score=31.16 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
++.-..|.|||-.+..+..+++.. + ..++||.-
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~-g--~~V~li~~ 108 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ-G--KSVLLAAG 108 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc-C--CEEEEEeC
Confidence 344689999999999888887654 2 36666653
No 467
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=34.39 E-value=2.1e+02 Score=28.65 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCC-CCHHHHHHHHHHhcc-CCCceEEEEecccc
Q 000642 1057 KLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGS-STIMDRRDMVRDFQH-RSDIFVFLLSTRAG 1134 (1377)
Q Consensus 1057 KL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGs-tk~edR~~~V~~Fq~-~~di~VfLLSTrAG 1134 (1377)
|...+.+|...|...|..|+.-.+.-+.+.+++.+ ..+..+.++=. ...+....+++.... +.++.|||++.+..
T Consensus 2 k~a~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~---~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~ 78 (115)
T PF03709_consen 2 KIAASRELAEALEQRGREVVDADSTDDALAIIESF---TDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDT 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT---TTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCH
T ss_pred ChHHHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC---CCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 45677888888888899999888877777776654 35666666532 112345566666654 67999999999888
Q ss_pred ccccCc---CcCCEEEEeCCCCChhhhh
Q 000642 1135 GLGINL---TAADTVIFYESDWNPTLDL 1159 (1377)
Q Consensus 1135 GlGINL---TaAdtVIfyDsdWNPt~d~ 1159 (1377)
+.-|++ -..+.+|.+..+ +|.-..
T Consensus 79 ~~~l~~~~l~~v~~~i~l~~~-t~~fia 105 (115)
T PF03709_consen 79 TEDLPAEVLGEVDGFIWLFED-TAEFIA 105 (115)
T ss_dssp HHCCCHHHHCCESEEEETTTT-THHHHH
T ss_pred cccCCHHHHhhccEEEEecCC-CHHHHH
Confidence 888885 457777877554 554443
No 468
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=34.10 E-value=61 Score=38.71 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=33.1
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
+.+-++|..- |..+...+.|-|++-.+|.|||-..-|++.++..
T Consensus 127 g~~~~~~~~~---L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 127 KIMTEAQASV---IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CCCCHHHHHH---HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4556666544 4445556778899999999999999998887753
No 469
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=33.99 E-value=54 Score=37.68 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 447 WLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 447 WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+|..+...+.+-|++-++|.|||-+.-+++.++...
T Consensus 119 ~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 119 FLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred HHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 445555567788999999999999999888776654
No 470
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=33.38 E-value=3.4e+02 Score=33.12 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=78.3
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccc------------------------hHHHHHHHHHHhCCCcEEEecCCCC-
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMT------------------------KMLNILEDYMNYRKYRYLRLDGSST- 1107 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t------------------------~mLDiLee~L~~~g~~y~rLDGstk- 1107 (1377)
..+||-..+..+...+...|.+|+.|+--- ..++.|.+.+...+.+++.||.=..
T Consensus 91 pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHh
Confidence 357899999999888877778888775210 1234455556666888888887321
Q ss_pred -----------HHHHHHHHH---HhccCCCceEEEEe--cccccc-c-cCc-CcCCEEEEeCCCCChhhhhHhhhch--h
Q 000642 1108 -----------IMDRRDMVR---DFQHRSDIFVFLLS--TRAGGL-G-INL-TAADTVIFYESDWNPTLDLQAMDRA--H 1166 (1377)
Q Consensus 1108 -----------~edR~~~V~---~Fq~~~di~VfLLS--TrAGGl-G-INL-TaAdtVIfyDsdWNPt~d~QAmdRa--H 1166 (1377)
..+-+.++. +|-...++-|||++ |+.|.. | -.| +.||+||.++-+=+ ...++=|+ .
T Consensus 171 ~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~~---~~~R~Lri~Kn 247 (372)
T cd01121 171 YSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRH---SEYRILRSVKN 247 (372)
T ss_pred hccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCCC---CcEEEEEEEeC
Confidence 123333333 44445678888874 443211 2 234 46999999986422 12333333 4
Q ss_pred ccCCcCcEEEEEEEeCC
Q 000642 1167 RLGQTKDVTVYRLICKE 1183 (1377)
Q Consensus 1167 RiGQtk~VtVYRLItkg 1183 (1377)
|.|.+.++.+|.+-..|
T Consensus 248 R~g~~~ei~~F~i~~~G 264 (372)
T cd01121 248 RFGSTNELGVFEMRENG 264 (372)
T ss_pred CCCCCCCEEEEEECCCC
Confidence 67888888888877666
No 471
>PRK09165 replicative DNA helicase; Provisional
Probab=33.05 E-value=2.4e+02 Score=35.90 Aligned_cols=51 Identities=22% Similarity=0.064 Sum_probs=38.0
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcc------------cCCcEEEEeCcccHHHHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKN------------IWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~------------i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
=.|||--+|+|||.-++.++.+.+..++ ...++|++..--...++..-+-.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la 281 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS 281 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH
Confidence 3699999999999999999888875432 12578888877666776665533
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=33.02 E-value=80 Score=38.77 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.8
Q ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 454 QGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 454 ~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
.|..+.+.-+.|.|||..+-.+...+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 4556777888999999876665555443
No 473
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=32.30 E-value=79 Score=37.31 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 446 QWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 446 ~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
.+|..+...+.|.+++-.+|.|||-..-+++.++..
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 445555667778899999999999999998887764
No 474
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.37 E-value=2.3e+02 Score=35.58 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=56.6
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEEEecc
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfLLSTr 1132 (1377)
|.|||-- .-+|..+.. +..+||.+.....+.-..+.|...|+....+.|+.+..++..+..+... +.+.|+++++.
T Consensus 35 TGsGKTl--~y~lp~l~~-~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe 110 (470)
T TIGR00614 35 TGGGKSL--CYQLPALCS-DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPE 110 (470)
T ss_pred CCCcHhH--HHHHHHHHc-CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHH
Confidence 7799963 344555544 4578888887777665566677889999999999998888888888744 56777777665
Q ss_pred c
Q 000642 1133 A 1133 (1377)
Q Consensus 1133 A 1133 (1377)
.
T Consensus 111 ~ 111 (470)
T TIGR00614 111 K 111 (470)
T ss_pred H
Confidence 4
No 475
>PRK12608 transcription termination factor Rho; Provisional
Probab=31.27 E-value=1.5e+02 Score=36.13 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=32.6
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
+.+.=.+.+..|.-+ -.|..++|.-+.|.|||..+..++..+...
T Consensus 116 ~~~~~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 116 SDDLSMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CcchhHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 334444566666543 356778889999999999999888877654
No 476
>PHA00350 putative assembly protein
Probab=31.16 E-value=97 Score=38.05 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=12.3
Q ss_pred eCCCCcHHHHHHHHH
Q 000642 462 DEMGLGKTIQAMAFL 476 (1377)
Q Consensus 462 DEMGLGKTIQsIAlL 476 (1377)
--+|.|||.-++...
T Consensus 8 G~pGSGKT~~aV~~~ 22 (399)
T PHA00350 8 GRPGSYKSYEAVVYH 22 (399)
T ss_pred cCCCCchhHHHHHHH
Confidence 358999999999853
No 477
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=31.09 E-value=1.3e+02 Score=36.84 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWA 502 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~ 502 (1377)
.|-+|.-++|.|||..+-++...+. .+++.|....++..|.
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQKFI 206 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHhhc
Confidence 3568999999999999888765432 3666666666655443
No 478
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.84 E-value=1.6e+02 Score=35.43 Aligned_cols=96 Identities=17% Similarity=0.366 Sum_probs=58.4
Q ss_pred ccccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEec--CCCCH------HHHHHHHHHhcc--C
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLD--GSSTI------MDRRDMVRDFQH--R 1121 (1377)
Q Consensus 1052 i~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLD--Gstk~------edR~~~V~~Fq~--~ 1121 (1377)
+..++=+.....++.+|.+.||.|+|.+-= -+.+.+.|...|+.|..+- |.+.. -.|..-+-++-. +
T Consensus 7 i~~p~hvhfFk~~I~eL~~~GheV~it~R~---~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~ 83 (335)
T PF04007_consen 7 ITHPAHVHFFKNIIRELEKRGHEVLITARD---KDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFK 83 (335)
T ss_pred CCCchHHHHHHHHHHHHHhCCCEEEEEEec---cchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666778889999999999999999853 3566666777899998883 43322 223333333322 5
Q ss_pred CCceEEEEecccc--ccccCcCcCCEEEEeCCCC
Q 000642 1122 SDIFVFLLSTRAG--GLGINLTAADTVIFYESDW 1153 (1377)
Q Consensus 1122 ~di~VfLLSTrAG--GlGINLTaAdtVIfyDsdW 1153 (1377)
|++.|-..|..|. +.| .+.-.|+|+|.++
T Consensus 84 pDv~is~~s~~a~~va~~---lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 84 PDVAISFGSPEAARVAFG---LGIPSIVFNDTEH 114 (335)
T ss_pred CCEEEecCcHHHHHHHHH---hCCCeEEEecCch
Confidence 6765534443332 222 2345667777554
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=30.64 E-value=1.5e+02 Score=37.38 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=44.0
Q ss_pred HHHHHHHHHH-HHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 441 QLKGLQWLVN-CYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 441 QlkGL~WL~~-ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
-..+|.-|+. -+..|.--++.-++|.|||+-+.-++...+.. + .+.|.|.---...|-......+
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-g--e~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-K--ERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-C--CeEEEEEeeCCHHHHHHHHHHc
Confidence 3455555442 12233345899999999999999999888754 2 3778888766666666666554
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=30.22 E-value=1.8e+02 Score=36.85 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRF 508 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf 508 (1377)
|.--+|+-++|.|||+-++-++.+.+..++ .++|.|.=-....+-.+.+..+
T Consensus 31 Gs~~li~G~pGsGKT~l~~qf~~~~~~~~g--e~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 31 GRPTLVSGTAGTGKTLFALQFLVNGIKRFD--EPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCEEEEEccCCHHHHHHHHHHc
Confidence 334588999999999999999877775533 4788887666666666666554
No 481
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=29.42 E-value=2.6e+02 Score=40.44 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=73.2
Q ss_pred hccCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh-cccCCcEEEEeCcccHHHHHHHHHHHCCC
Q 000642 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE-KNIWGPFLVVAPASVLNNWADEISRFCPD 511 (1377)
Q Consensus 433 l~~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~-~~i~gp~LIV~P~Sll~nW~~Ei~kf~p~ 511 (1377)
+...|-+-|..++.-++.- ...-.+|---.|.|||-+.-+++..+... ......++.++|.+-... ++..- +
T Consensus 832 ~~~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~---~L~e~--G 904 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG---EMRSA--G 904 (1623)
T ss_pred hhcccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH---HHHHh--C
Confidence 3347899999999766531 23346788889999999976665544321 111124677888554332 22211 1
Q ss_pred CeeEeecCChhhhHHHhhccCcccccccCCCeeEEEEechhhhhhhhhhhccceeEEEEcccccccCchhHHHHHHHhcc
Q 000642 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFN 591 (1377)
Q Consensus 512 l~vl~y~Gs~~~rk~lrk~~~~k~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEAH~iKN~~S~r~kal~~l~ 591 (1377)
+.. ..+..++..... + . ...+. ....-+++|||||-.+-+. ...+.+..+.
T Consensus 905 i~A----------~TIasfL~~~~~------~-------~-~~~~~---~~~~~~llIVDEASMV~~~--~m~~ll~~~~ 955 (1623)
T PRK14712 905 VDA----------QTLASFLHDTQL------Q-------Q-RSGET---PDFSNTLFLLDESSMVGNT--DMARAYALIA 955 (1623)
T ss_pred chH----------hhHHHHhccccc------h-------h-hcccC---CCCCCcEEEEEccccccHH--HHHHHHHhhh
Confidence 110 111111110000 0 0 00000 0124589999999999543 2333333333
Q ss_pred -CCceEEeecCCCCCC
Q 000642 592 -CRNRLLLTGTPIQNN 606 (1377)
Q Consensus 592 -~~~rLlLTGTPIQNs 606 (1377)
...|++|.|=|-|..
T Consensus 956 ~~garvVLVGD~~QL~ 971 (1623)
T PRK14712 956 AGGGRAVASGDTDQLQ 971 (1623)
T ss_pred hCCCEEEEEcchhhcC
Confidence 357999999988753
No 482
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=29.25 E-value=39 Score=36.75 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=20.1
Q ss_pred EEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc
Q 000642 460 LADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 495 (1377)
Q Consensus 460 LADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~ 495 (1377)
|--+=|=|||-...-+++.+..... ..++|.+|.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~ 35 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPS 35 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCC
Confidence 4446799999887777766654432 478888884
No 483
>PF12846 AAA_10: AAA-like domain
Probab=29.24 E-value=1.4e+02 Score=34.10 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=31.9
Q ss_pred CEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 457 NGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 457 nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
+.++.-.+|.|||..+..++..+.... .+++|+=|..-...|.+.
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 567888999999999998887777653 366777666444444433
No 484
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.19 E-value=1.5e+02 Score=37.95 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhcc
Q 000642 288 ALKREQELREAKRQQQRLNFLIQQTELYSHFMQNK 322 (1377)
Q Consensus 288 ~~k~~~e~~e~~rq~rkl~fli~qtely~hf~~~k 322 (1377)
.|.+..|+.||...+|||.-.-.|.+.-.|+--..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 36 EAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555788888899988888877666654333
No 485
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=29.10 E-value=1.4e+02 Score=33.39 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHH
Q 000642 455 GLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISR 507 (1377)
Q Consensus 455 g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~k 507 (1377)
|..-+++-++|.|||.-+..++.+.+.. + .+++.|.-.....+..+....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g--~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD-G--DPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc-C--CeEEEEEccCCHHHHHHHHHH
Confidence 4445789999999999999988766543 2 467777765555554444433
No 486
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.97 E-value=6.3e+02 Score=31.52 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=23.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeC
Q 000642 459 ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAP 494 (1377)
Q Consensus 459 ILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P 494 (1377)
.|+--.|.|||-.+..+.+++... + .+++||+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~-G--~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK-G--FKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-C--CCEEEEcC
Confidence 466689999999998888877643 3 25566654
No 487
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=28.89 E-value=79 Score=42.01 Aligned_cols=55 Identities=24% Similarity=0.186 Sum_probs=41.4
Q ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCcc
Q 000642 436 SLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPAS 496 (1377)
Q Consensus 436 ~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~S 496 (1377)
.|-+-|.+++.+- .| ..++---.|.|||-..+.-++||.+..++ ...+|+|+-..
T Consensus 9 ~Ln~~Q~~av~~~-----~g-~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~ 64 (721)
T PRK11773 9 SLNDKQREAVAAP-----LG-NMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTN 64 (721)
T ss_pred hcCHHHHHHHhCC-----CC-CEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccH
Confidence 5889999998642 23 45666679999999999999999976554 23478887743
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=28.74 E-value=1.6e+02 Score=37.35 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHHHHHHC
Q 000642 458 GILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1377)
Q Consensus 458 GILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~Ei~kf~ 509 (1377)
-++.-++|.|||+-+..+++..+.. + .++++|.-.....+-.+.+..|.
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~-g--~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRR-G--ERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC-C--CcEEEEEecCCHHHHHHHHHHcC
Confidence 3778999999999999999877643 2 47788876655555555555543
No 489
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=28.69 E-value=1.4e+02 Score=39.93 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=30.2
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHHHHH
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW~~E 504 (1377)
.|.+|.-.+|.|||..+=++...+ + .+++.|-+..++..|..|
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~----~--~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES----G--ANFIAVRGPEILSKWVGE 530 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc----C--CCEEEEehHHHhhcccCc
Confidence 345778899999999887765443 2 477877777666666443
No 490
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=28.65 E-value=85 Score=40.07 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=44.9
Q ss_pred cCcchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhccc---CCcEEEEeCcccHHHHHHH
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI---WGPFLVVAPASVLNNWADE 504 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i---~gp~LIV~P~Sll~nW~~E 504 (1377)
.|+.+-|-..++. +.+.--|+--..|.|||-.++--+|||...++. .+|+||+.|.-+..-....
T Consensus 211 ~TIQkEQneIIR~-----ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 211 ETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHhhHhHHHHHhc-----cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 3555666665532 122233566789999999999889998866543 3679999999887766443
No 491
>PRK10646 ADP-binding protein; Provisional
Probab=28.58 E-value=75 Score=33.79 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEE
Q 000642 447 WLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFL 490 (1377)
Q Consensus 447 WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~L 490 (1377)
.|+.+...|.--+|.-++|.|||.-+=+++..|-....+..|+-
T Consensus 20 ~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTF 63 (153)
T PRK10646 20 RVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTY 63 (153)
T ss_pred HHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCE
Confidence 45555544544578999999999999888888754444444433
No 492
>PRK10689 transcription-repair coupling factor; Provisional
Probab=28.29 E-value=2.6e+02 Score=39.25 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=61.0
Q ss_pred cccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHhccCCCceEEE
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMN----YRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1128 (1377)
Q Consensus 1053 ~~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~----~~g~~y~rLDGstk~edR~~~V~~Fq~~~di~VfL 1128 (1377)
+.+||-.+...........|.+|||-+.-+....-+.+.+. ..++++..+.|..+..++..++..... +.+.|++
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~-g~~dIVV 708 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE-GKIDILI 708 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh-CCCCEEE
Confidence 68999976544333334568899999988877655544443 335677788999999999998888765 3455644
Q ss_pred EeccccccccCcCcCCEEEE
Q 000642 1129 LSTRAGGLGINLTAADTVIF 1148 (1377)
Q Consensus 1129 LSTrAGGlGINLTaAdtVIf 1148 (1377)
.+.+....++++.....||+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 44333333445544444443
No 493
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=28.20 E-value=91 Score=41.66 Aligned_cols=62 Identities=34% Similarity=0.444 Sum_probs=48.4
Q ss_pred CCCceEEEEeccccccccCcCcCCEEEEeCC---------CCChhhhhHhhhchhccCCcCcEEEEEEEeCCCH
Q 000642 1121 RSDIFVFLLSTRAGGLGINLTAADTVIFYES---------DWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETV 1185 (1377)
Q Consensus 1121 ~~di~VfLLSTrAGGlGINLTaAdtVIfyDs---------dWNPt~d~QAmdRaHRiGQtk~VtVYRLItkgTI 1185 (1377)
++=++| |.+|..-+.|+|+.+ -||||-.. +-+|.-..|.-|||+|-|=...-||.- ++++.+
T Consensus 654 rGlVKV-LFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii-~~~~~v 724 (1248)
T KOG0947|consen 654 RGLVKV-LFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVII-MCKDSV 724 (1248)
T ss_pred cCceEE-EeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEE-EecCCC
Confidence 466788 889999999999985 56666443 578999999999999999887777764 445543
No 494
>PRK10824 glutaredoxin-4; Provisional
Probab=27.96 E-value=2.7e+02 Score=28.25 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHHHhhCCCeEEEEec------cchHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhccCC-CceEEEEecccccc
Q 000642 1064 LLKRLRAENHRVLLFAQ------MTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGL 1136 (1377)
Q Consensus 1064 LL~~Lk~~ghKVLIFSQ------~t~mLDiLee~L~~~g~~y~rLDGstk~edR~~~V~~Fq~~~-di~VfLLSTrAGGl 1136 (1377)
.+.++.+ .|+|+||+. +-..-......|...|+.|..++=....+-|. .+..+...+ =..||+=..-.||.
T Consensus 7 ~v~~~I~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 7 KIQRQIA-ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred HHHHHHh-cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcCh
Confidence 3444433 589999987 34466777777877787765554433444444 444443322 23566666666663
No 495
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=27.88 E-value=2e+02 Score=35.34 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Q 000642 442 LKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEE 482 (1377)
Q Consensus 442 lkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~ 482 (1377)
.+.+.+|.-.- .|..|++.-..|.|||..+-.+...+...
T Consensus 157 ~rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 157 TRIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred eeeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 34445554432 35556666779999998776655555543
No 496
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=5e+02 Score=34.29 Aligned_cols=149 Identities=17% Similarity=0.106 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCc----------ccHHHHHHHHH
Q 000642 437 LKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA----------SVLNNWADEIS 506 (1377)
Q Consensus 437 Lr~YQlkGL~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~----------Sll~nW~~Ei~ 506 (1377)
+..|-..-.+..+...-...+-+|+-..|.|||+-+=+++.++- ...+.--.+|=|-. .++.+|..|..
T Consensus 413 ~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~ 491 (952)
T KOG0735|consen 413 VPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL 491 (952)
T ss_pred cchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHHHHH
Confidence 44444444443333222344679999999999999999998876 22221122233332 34667777777
Q ss_pred HHCCCCeeEe-----ecCChh-------hhHHHhhccCcc-cccccCCCeeEEEEechhhhhhhhhhhccceeEEEEccc
Q 000642 507 RFCPDLKTLP-----YWGGLQ-------ERMVLRKNINPK-RLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEA 573 (1377)
Q Consensus 507 kf~p~l~vl~-----y~Gs~~-------~rk~lrk~~~~k-~l~~~~~~f~VvItSYe~l~~d~~~l~~~~w~~VIlDEA 573 (1377)
.+.|.+-++- .+++.. ....+-.+.++- ..|.+...--.+|.|-+.+.+-.+.|..-. ++++.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~----~Fq~~ 567 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPL----LFQIV 567 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCcc----ceEEE
Confidence 7888644422 111111 112333444222 124444444466666666555444443322 88999
Q ss_pred ccccCchhH-HHHHHHhc
Q 000642 574 QAIKSSNSI-RWKTLLSF 590 (1377)
Q Consensus 574 H~iKN~~S~-r~kal~~l 590 (1377)
.++.++... |...|..+
T Consensus 568 ~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTI 585 (952)
T ss_pred EecCCcchhHHHHHHHHH
Confidence 999987654 44444444
No 497
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=27.40 E-value=75 Score=38.11 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHHHHHH
Q 000642 446 QWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 481 (1377)
Q Consensus 446 ~WL~~ly~~g~nGILADEMGLGKTIQsIAlLa~L~e 481 (1377)
.||..+...+.|.+++-.+|.|||-..-|++.++..
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 466666678889999999999999999898887754
No 498
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=27.33 E-value=1e+03 Score=28.45 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=29.0
Q ss_pred hcCCCEEEEeCCCCcHHHHHHHHHHHHHHhcccCCcEEEEeCcccHHHH
Q 000642 453 EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNW 501 (1377)
Q Consensus 453 ~~g~nGILADEMGLGKTIQsIAlLa~L~e~~~i~gp~LIV~P~Sll~nW 501 (1377)
..+...+|--|.|.||+..|=++-.+. .+ ..+||++|--..+-..|
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s-~r--~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLS-KR--WQGPLVKLNCAALSENL 65 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhc-Cc--cCCCeEEEeCCCCChHH
Confidence 456678999999999999766543222 11 23688877544443333
No 499
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.20 E-value=1.1e+02 Score=42.79 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhccc-CCcEEEEeCccc
Q 000642 456 LNGILADEMGLGKTIQAMAFLAHLAEEKNI-WGPFLVVAPASV 497 (1377)
Q Consensus 456 ~nGILADEMGLGKTIQsIAlLa~L~e~~~i-~gp~LIV~P~Sl 497 (1377)
.+.++|-.+|.|||+-.-++|..++..+.- .-.+++|=|+.+
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~v 1053 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKML 1053 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCcc
Confidence 467999999999999999999887765422 124666677753
No 500
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=27.16 E-value=1e+02 Score=40.30 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=49.1
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEeccchHHHHHHHHHHhCCCcEEEecCCCC
Q 000642 1054 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSST 1107 (1377)
Q Consensus 1054 ~SgKL~~L~~LL~~Lk~~ghKVLIFSQ~t~mLDiLee~L~~~g~~y~rLDGstk 1107 (1377)
..||-..+..++..+...|.+|||.++-....|-|.+.|...+++++||.+...
T Consensus 183 GTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~r 236 (637)
T TIGR00376 183 GTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPAR 236 (637)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCchh
Confidence 479999999999999989999999999999999999999888999999987654
Done!