Query 000642
Match_columns 1377
No_of_seqs 533 out of 3095
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 17:27:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000642.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_413-416//hhsearch_pdb/000642hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 813.2 40.6 493 428-1223 227-730 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 770.4 42.9 508 426-1226 45-571 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 686.1 41.5 461 430-1224 31-494 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 491.8 31.9 471 433-1200 150-632 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 406.0 28.6 464 435-1201 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 387.3 22.8 172 1053-1224 93-265 (271)
7 4a2w_A RIG-I, retinoic acid in 1.0 1 1 365.5 24.7 161 1053-1223 610-784 (936)
8 2fwr_A DNA repair protein RAD2 1.0 1 1 362.2 19.3 376 434-1199 91-470 (472)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 356.2 31.7 148 1053-1206 610-771 (797)
10 3hgt_A HDA1 complex subunit 3; 1.0 1 1 346.0 21.0 136 1052-1194 105-248 (328)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=813.18 Aligned_cols=493 Identities=40% Similarity=0.700 Sum_probs=415.3
Q ss_pred CCCCH-HCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 58710-00386346999999999977369877999189976899999999999883055884999927533999999999
Q 000642 428 QTPEL-FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEIS 506 (1377)
Q Consensus 428 ~qP~~-l~~~Lr~YQlkGL~WL~nlye~g~nGILADEMGLGKTIQsIAlLa~Lae~~~iwGP~LVVaPaSlL~NW~~Ei~ 506 (1377)
.+|+. ..++|+|||+.|++||+.++.++.||||||+||||||+|+|++++++.......+|+|||||.+++.||..||.
T Consensus 227 ~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~ 306 (800)
T 3mwy_W 227 VQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFE 306 (800)
T ss_dssp SCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 69986579975899999999999985138998998278753299999999999986077998899988038999999999
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHCCC---CCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHH
Q ss_conf 98999806753187035688863068---300002479801999731212200544420460299985532136811599
Q 000642 507 RFCPDLKTLPYWGGLQERMVLRKNIN---PKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIR 583 (1377)
Q Consensus 507 kf~P~l~vl~y~Gs~~~Rk~lrk~~~---~k~l~~~~~~f~VvITSYqlvv~D~~~l~~ikWqyiILDEAH~IKN~~S~r 583 (1377)
+|+|++++++|+|+...|..++.+.. ..........|+|+||||+++..+...|..++|++||+||||++||..|++
T Consensus 307 ~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~ 386 (800)
T 3mwy_W 307 KWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSL 386 (800)
T ss_dssp HHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHH
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCHHHH
T ss_conf 97799649998277777889888776226300134456678899069999864999833773256413444414710199
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998035773698535788899799999999666999999789999983100011236897456789999998777875
Q 000642 584 WKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFML 663 (1377)
Q Consensus 584 ~kaLl~l~~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lFds~~eF~ewFsk~Ies~~~~~~~lne~ql~rLh~iLkPfmL 663 (1377)
++++..+++++||+|||||+||++.|||+||+||+|+.|.....|.-.. ........+.+|+.+|+|||+
T Consensus 387 ~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----------~~~~~~~~~~~L~~~l~p~~l 456 (800)
T 3mwy_W 387 YESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFIL 456 (800)
T ss_dssp HHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----------CTTHHHHHHHHHHHTTGGGEE
T ss_pred HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999975224389722785779999999999985866367434423222----------314689999999999757775
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCC
Q ss_conf 77676663117985499999148999999999999997442101122387316869999999999998607800000125
Q 000642 664 RRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNE 743 (1377)
Q Consensus 664 RR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~LlnlvmqLRKvCnHP~Lfer~~ 743 (1377)
||+|++|...||++.+.+++|+||+.|+.+|..+....... +. ........++++++++||++||||.|+...+
T Consensus 457 RR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~-l~-----~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~ 530 (800)
T 3mwy_W 457 RRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA-LT-----AGAKGGHFSLLNIMNELKKASNHPYLFDNAE 530 (800)
T ss_dssp ECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------CTHHHHHHHHHHHHHCGGGSSSHH
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-HH-----HCCCCCHHHHHHHHHHHHHHHCCHHHHCCHH
T ss_conf 32087664316882799997079999999999999999999-86-----1035454469999999998735865423557
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 88644345688999999988753323458789533444124688764444556310267733677865620231013456
Q 000642 744 GSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQ 823 (1377)
Q Consensus 744 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~~i~~~~~i~~ 823 (1377)
... ...
T Consensus 531 ~~~------------------------------------------------------------------~~~-------- 536 (800)
T 3mwy_W 531 ERV------------------------------------------------------------------LQK-------- 536 (800)
T ss_dssp HHH------------------------------------------------------------------CCC--------
T ss_pred HHH------------------------------------------------------------------HHH--------
T ss_conf 899------------------------------------------------------------------886--------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 65310479999998765444332357895799886210258999999875444421013567865201545679998751
Q 000642 824 SIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGK 903 (1377)
Q Consensus 824 s~~~~~~~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 903 (1377)
++ ++..
T Consensus 537 ------------------~~-----------------------------------------------~~~~--------- 542 (800)
T 3mwy_W 537 ------------------FG-----------------------------------------------DGKM--------- 542 (800)
T ss_dssp ------------------C---------------------------------------------------C---------
T ss_pred ------------------CC-----------------------------------------------CCCC---------
T ss_conf ------------------15-----------------------------------------------6655---------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12556630257620346643111479999986102344689887777731011245687889997444587420001101
Q 000642 904 VRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTE 983 (1377)
Q Consensus 904 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~ 983 (1377)
....
T Consensus 543 ------------------------------~~~~---------------------------------------------- 546 (800)
T 3mwy_W 543 ------------------------------TREN---------------------------------------------- 546 (800)
T ss_dssp ------------------------------CSHH----------------------------------------------
T ss_pred ------------------------------CHHH----------------------------------------------
T ss_conf ------------------------------5778----------------------------------------------
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 13664689986201244467899999999611453200277761023222210289999988895332344506999999
Q 000642 984 EQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDI 1063 (1377)
Q Consensus 984 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~~~li~~SgKL~~Ld~ 1063 (1377)
. ...++..|+|+..|..
T Consensus 547 -------------------------------~--------------------------------~~~l~~~s~K~~~L~~ 563 (800)
T 3mwy_W 547 -------------------------------V--------------------------------LRGLIMSSGKMVLLDQ 563 (800)
T ss_dssp -------------------------------H--------------------------------HHHHHHTCHHHHHHHH
T ss_pred -------------------------------H--------------------------------HHHHHHCCHHHHHHHH
T ss_conf -------------------------------8--------------------------------8876642769999999
Q ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCC
Q ss_conf 999985289859999544048999999997379948994499999999999999603-7992499982444335667675
Q 000642 1064 LLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQH-RSDIFVFLLSTRAGGLGINLTA 1142 (1377)
Q Consensus 1064 LL~~Lk~~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDGStk~edRr~~V~dFq~-d~di~VFLLSTrAGGlGINLTa 1142 (1377)
+|.+++..||||||||||+.|+++|+++|..+|+.|++|||+++..+|+.++++|++ ++..+|||+||+|||+||||++
T Consensus 564 lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 564 LLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp HHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred HHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99997527981899963599999999999867997899969999999999999960899982599974544567877601
Q ss_pred CCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCH
Q ss_conf 788998379999113558432010059958389999985899999999999978999999982986458------88998
Q 000642 1143 ADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQG------DILAP 1216 (1377)
Q Consensus 1143 AdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~gg~~~~------~~l~~ 1216 (1377)
||+||+||++|||..+.||+|||||+||+++|+||||+++|||||+|++++..|..+.+.||+++.... ..++.
T Consensus 644 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~ 723 (800)
T 3mwy_W 644 ADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNA 723 (800)
T ss_dssp CCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 63689946878811689999998855898637999986199899999999999888999997037566532112347899
Q ss_pred HHHHHHH
Q ss_conf 8699820
Q 000642 1217 EDVVSLL 1223 (1377)
Q Consensus 1217 edi~~ll 1223 (1377)
+++..++
T Consensus 724 ~el~~ll 730 (800)
T 3mwy_W 724 GELSAIL 730 (800)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=770.42 Aligned_cols=508 Identities=29% Similarity=0.508 Sum_probs=416.9
Q ss_pred CCCCCCHHCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCCEEEEECCC
Q ss_conf 545871000386346999999999977-----369877999189976899999999999883055----88499992753
Q 000642 426 TVQTPELFKGSLKEYQLKGLQWLVNCY-----EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNI----WGPFLVVAPAS 496 (1377)
Q Consensus 426 ~v~qP~~l~~~Lr~YQlkGL~WL~nly-----e~g~nGILADEMGLGKTIQsIAlLa~Lae~~~i----wGP~LVVaPaS 496 (1377)
.+..|+.+.++|+|||+.|++||..++ ..+.||||||+||||||+|+|+++.++...... .+++|||||.+
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 17518564003519999999999984233544588875961078742999999999999974866567778579996589
Q ss_pred CHHHHHHHHHHHCCC-CEEEEECCC-HHHH-HHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 399999999998999-806753187-0356-8886306830000247980199973121220054442046029998553
Q 000642 497 VLNNWADEISRFCPD-LKTLPYWGG-LQER-MVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEA 573 (1377)
Q Consensus 497 lL~NW~~Ei~kf~P~-l~vl~y~Gs-~~~R-k~lrk~~~~k~l~~~~~~f~VvITSYqlvv~D~~~l~~ikWqyiILDEA 573 (1377)
++.||.+||.+|+|. +.++.++|+ ...+ ..+..+.... .....++|+||||+++..+...|....|++||+|||
T Consensus 125 ll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEa 201 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ---GMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEG 201 (644)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC---SSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHC---CCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 98879999999758872599980898899999999998733---777787579963899876578750488657998786
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC-----CH
Q ss_conf 2136811599999980357736985357888997999999996669999997899999831000112368974-----56
Q 000642 574 QAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTL-----NE 648 (1377)
Q Consensus 574 H~IKN~~S~r~kaLl~l~~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lFds~~eF~ewFsk~Ies~~~~~~~l-----ne 648 (1377)
|+|||+.+++++++..+++++||+|||||+||++.|||+|++|++|++|++..+|..+|..||..+...+... ..
T Consensus 202 H~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~ 281 (644)
T 1z3i_X 202 HRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGE 281 (644)
T ss_dssp GGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHH
T ss_conf 22478045999999855567379984673458899999999861887689999999863261541677677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78999999877787577676663117985499999148999999999999997442101122387316869999999999
Q 000642 649 HQLNRLHAILKPFMLRRVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQ 728 (1377)
Q Consensus 649 ~ql~rLh~iLkPfmLRR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~Llnlvmq 728 (1377)
..+..|+.+++|||+||+|.+|...||++.+.+++|+||+.|+.+|+.+.........+. .+ ....+.+..+++
T Consensus 282 ~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~--~g----~~~~~~l~~l~~ 355 (644)
T 1z3i_X 282 QKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ--TG----KISVSSLSSITS 355 (644)
T ss_dssp HHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC--TT----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH--CC----CCCHHHHHHHHH
T ss_conf 999999999889998710876764279836999983799899999999999899999876--27----621459999999
Q ss_pred HHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99860780000012588644345688999999988753323458789533444124688764444556310267733677
Q 000642 729 LRKVCNHPELFERNEGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISREL 808 (1377)
Q Consensus 729 LRKvCnHP~Lfer~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~ 808 (1377)
||++||||.|+.... ...
T Consensus 356 Lrk~c~hp~l~~~~~----------------------------------------------~~~---------------- 373 (644)
T 1z3i_X 356 LKKLCNHPALIYEKC----------------------------------------------LTG---------------- 373 (644)
T ss_dssp HHHHHHCTHHHHHHH----------------------------------------------HHT----------------
T ss_pred HHHHHCCHHHHHHHH----------------------------------------------HCC----------------
T ss_conf 999957999888887----------------------------------------------415----------------
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86562023101345665310479999998765444332357895799886210258999999875444421013567865
Q 000642 809 FQKRFNIFSAENVYQSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFME 888 (1377)
Q Consensus 809 l~~~~~i~~~~~i~~s~~~~~~~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 888 (1377)
T Consensus 374 -------------------------------------------------------------------------------- 373 (644)
T 1z3i_X 374 -------------------------------------------------------------------------------- 373 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 20154567999875112556630257620346643111479999986102344689887777731011245687889997
Q 000642 889 AMDGELNENHPDRGKVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPI 968 (1377)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i 968 (1377)
+..... .. ...|..
T Consensus 374 --~~~~~~---------~~--------------------------------------------------~~~~~~----- 387 (644)
T 1z3i_X 374 --EEGFDG---------AL--------------------------------------------------DLFPQN----- 387 (644)
T ss_dssp --CTTCTT---------GG--------------------------------------------------GTSCSS-----
T ss_pred --CCHHHH---------HH--------------------------------------------------HHCCCC-----
T ss_conf --400355---------77--------------------------------------------------645421-----
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 44458742000110113664689986201244467899999999611453200277761023222210289999988895
Q 000642 969 NVQCSDRNFTYRMTEEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDP 1048 (1377)
Q Consensus 969 ~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~ 1048 (1377)
+. . .
T Consensus 388 --------------------------------------------------------------------~~----~----~ 391 (644)
T 1z3i_X 388 --------------------------------------------------------------------YS----T----K 391 (644)
T ss_dssp --------------------------------------------------------------------CC----S----S
T ss_pred --------------------------------------------------------------------CC----C----C
T ss_conf --------------------------------------------------------------------11----0----0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCC-CEE
Q ss_conf 3323445069999999999852-89859999544048999999997379948994499999999999999603799-249
Q 000642 1049 AKLLTDSGKLQTLDILLKRLRA-ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSD-IFV 1126 (1377)
Q Consensus 1049 ~~li~~SgKL~~Ld~LL~~Lk~-~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDGStk~edRr~~V~dFq~d~d-i~V 1126 (1377)
......|+|+..|+.+|..++. .++|+||||||+.++++|+++|..+|+.|++|||+++..+|+.++++|++++. .+|
T Consensus 392 ~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 471 (644)
T 1z3i_X 392 AVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 471 (644)
T ss_dssp SCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 05701174899999999998646998799998059999999999997799789983999999999999996399999679
Q ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99824443356676757889983799991135584320100599583899999858999999999999789999999829
Q 000642 1127 FLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTG 1206 (1377)
Q Consensus 1127 FLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~g 1206 (1377)
||+||+|||+||||++|++||+||+||||+.+.||+||+||+||+++|+||||+++|||||+|++++..|..+.+.|+++
T Consensus 472 ~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~ 551 (644)
T 1z3i_X 472 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDE 551 (644)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSC
T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99844556678465238989997999981379999884032289872699998879889999999999999999998568
Q ss_pred CCCCCCCCCHHHHHHHHCCC
Q ss_conf 86458889988699820690
Q 000642 1207 GHVQGDILAPEDVVSLLLDD 1226 (1377)
Q Consensus 1207 g~~~~~~l~~edi~~ll~d~ 1226 (1377)
+......++.+++..++.-+
T Consensus 552 ~~~~~~~~~~~~l~~Lf~~~ 571 (644)
T 1z3i_X 552 EQDVERHFSLGELRELFSLN 571 (644)
T ss_dssp SSSCCCSSCHHHHHHHTCCC
T ss_pred CCHHHCCCCHHHHHHHHCCC
T ss_conf 60543378999999986789
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=686.08 Aligned_cols=461 Identities=32% Similarity=0.581 Sum_probs=409.0
Q ss_pred CCHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 71000386346999999999977369877999189976899999999999883055884999927533999999999989
Q 000642 430 PELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFC 509 (1377)
Q Consensus 430 P~~l~~~Lr~YQlkGL~WL~nlye~g~nGILADEMGLGKTIQsIAlLa~Lae~~~iwGP~LVVaPaSlL~NW~~Ei~kf~ 509 (1377)
|..++.+|+|||.+|+.||..++..+.||||||+||+|||+|+|+++..+..... .+|+|||||.+++.||.+||.+|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTTHHHHHHHHHHHC
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCCEEEECCHHHHHHHHHHHHHHC
T ss_conf 8332003369999999999997417998899808997389999999998875589-997899903899999999999977
Q ss_pred CCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 99806753187035688863068300002479801999731212200544420460299985532136811599999980
Q 000642 510 PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLS 589 (1377)
Q Consensus 510 P~l~vl~y~Gs~~~Rk~lrk~~~~k~l~~~~~~f~VvITSYqlvv~D~~~l~~ikWqyiILDEAH~IKN~~S~r~kaLl~ 589 (1377)
|.+++.+++|.... .....++|+||||+.+..+.. +....|++||+||||++||..+++++++..
T Consensus 110 ~~~~v~~~~g~~~~--------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~ 174 (500)
T 1z63_A 110 PHLRFAVFHEDRSK--------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE 174 (500)
T ss_dssp TTSCEEECSSSTTS--------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHT
T ss_pred CCCEEEEEECCCHH--------------CCCCCCCEEEEEHHHHHCCCH-HCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99559997267021--------------003577689963799726302-117872879980841017876899999996
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35773698535788899799999999666999999789999983100011236897456789999998777875776766
Q 000642 590 FNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 669 (1377)
Q Consensus 590 l~~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lFds~~eF~ewFsk~Ies~~~~~~~lne~ql~rLh~iLkPfmLRR~Kkd 669 (1377)
+.+++||+|||||++|++.|||++++||.|++|++...|.++|..+++.. +.....+|+.+++|||+||+|.+
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~-------~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-------DNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTT-------CHHHHHHHHHHHTTTEECCCTTC
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHEEEECCCC
T ss_conf 00471899746777799999999999858775799899999852511146-------68899999999766745502554
Q ss_pred --HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC
Q ss_conf --631179854999991489999999999999974421011223873168699999999999986078000001258864
Q 000642 670 --VISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSY 747 (1377)
Q Consensus 670 --V~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~LlnlvmqLRKvCnHP~Lfer~~~~s~ 747 (1377)
+...||++.+..++|+|++.|+.+|+.+....... +.. .........++..++++|++|+||.++...
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~----- 317 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNN--IDS---VTGIKRKGMILSTLLKLKQIVDHPALLKGG----- 317 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTT--TTT---CCTHHHHHHHHHHHHHHHHHTTCTHHHHCS-----
T ss_pred CCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH--HHH---HHCCCCHHHHHHHHHHHHHHHCCHHHHCCC-----
T ss_conf 2411229997589998189999999999999999999--986---423210679999999999881799884385-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 43456889999999887533234587895334441246887644445563102677336778656202310134566531
Q 000642 748 LYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFS 827 (1377)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~~i~~~~~i~~s~~~ 827 (1377)
T Consensus 318 -------------------------------------------------------------------------------- 317 (500)
T 1z63_A 318 -------------------------------------------------------------------------------- 317 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 04799999987654443323578957998862102589999998754444210135678652015456799987511255
Q 000642 828 LASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAV 907 (1377)
Q Consensus 828 ~~~~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 907 (1377)
+
T Consensus 318 -----------------------------------------------------------------~-------------- 318 (500)
T 1z63_A 318 -----------------------------------------------------------------E-------------- 318 (500)
T ss_dssp -----------------------------------------------------------------C--------------
T ss_pred -----------------------------------------------------------------C--------------
T ss_conf -----------------------------------------------------------------2--------------
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66302576203466431114799999861023446898877777310112456878899974445874200011011366
Q 000642 908 TRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHD 987 (1377)
Q Consensus 908 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~ 987 (1377)
T Consensus 319 -------------------------------------------------------------------------------- 318 (500)
T 1z63_A 319 -------------------------------------------------------------------------------- 318 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 46899862012444678999999996114532002777610232222102899999888953323445069999999999
Q 000642 988 PWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKR 1067 (1377)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~~~li~~SgKL~~Ld~LL~~ 1067 (1377)
..+..|+|+..|.++|.+
T Consensus 319 --------------------------------------------------------------~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 319 --------------------------------------------------------------QSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp --------------------------------------------------------------CCSTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CHHHCCHHHHHHHHHHHH
T ss_conf --------------------------------------------------------------011115529999999999
Q ss_pred HHHCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 8528985999954404899999999737-994899449999999999999960379924999824443356676757889
Q 000642 1068 LRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTV 1146 (1377)
Q Consensus 1068 Lk~~ghKVLIFSQ~t~mLDlLee~L~~r-g~~y~rLDGStk~edRr~~V~dFq~d~di~VFLLSTrAGGlGINLTaAdtV 1146 (1377)
+...|+|+|||++++.+++.|+++|... |+.+.+++|+++..+|+.++++|++++++.|+|+||++||+||||++|++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEE
T ss_conf 87268868999721889999999998853887699979999999999999960899987799953335577744558889
Q ss_pred EEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC
Q ss_conf 983799991135584320100599583899999858999999999999789999999829864588899886998206
Q 000642 1147 IFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDILAPEDVVSLLL 1224 (1377)
Q Consensus 1147 IfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~gg~~~~~~l~~edi~~ll~ 1224 (1377)
|+||++|||..+.||+||+||+||+++|+||+|+++|||||+|++++..|..+.+.+++++......++.+|+..++.
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHS
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHC
T ss_conf 995899895458999998887389870699997748989999999999999999998606850211599999999964
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=491.84 Aligned_cols=471 Identities=19% Similarity=0.241 Sum_probs=300.1
Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 00386346999999999977369877999189976899999999999883055884999927533999999999989998
Q 000642 433 FKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDL 512 (1377)
Q Consensus 433 l~~~Lr~YQlkGL~WL~nlye~g~nGILADEMGLGKTIQsIAlLa~Lae~~~iwGP~LVVaPaSlL~NW~~Ei~kf~P~l 512 (1377)
...+|+|||+.++.|+... .+.+|||||+||+|||+++++++..+.... ..+++|||||.+++.||..||.+|+ ++
T Consensus 150 ~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~sLl~Qw~~E~~~~f-~l 225 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPETLQHQWLVEMLRRF-NL 225 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCTTTHHHHHHHHHHHS-CC
T ss_pred CCCCCCHHHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHH-CC
T ss_conf 8999709999999999970--589889878999759999999999999818-9982999957888999999999986-99
Q ss_pred EEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHH---HHHHCCCEEEEEECCCCCCCCCHHH---HHHH
Q ss_conf 067531870356888630683000024798019997312122005---4442046029998553213681159---9999
Q 000642 513 KTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADE---KYFRRVKWQYMVLDEAQAIKSSNSI---RWKT 586 (1377)
Q Consensus 513 ~vl~y~Gs~~~Rk~lrk~~~~k~l~~~~~~f~VvITSYqlvv~D~---~~l~~ikWqyiILDEAH~IKN~~S~---r~ka 586 (1377)
++.+|+|+...... ... ......++|+|+||+++.++. ..+....|++||+||||+++|..+. +++.
T Consensus 226 ~v~v~~~~~~~~~~-~~~------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 226 RFALFDDERYAEAQ-HDA------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp CCEECCHHHHHHHH-HTT------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred CEEEECCCHHHHHH-HHC------CCCCCCCCEEEECHHHHHHCHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHH
T ss_conf 87998062055543-200------36445689899768998648788887641587789744467625888754299999
Q ss_pred HHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9803--57736985357888997999999996669999997899999831000112368974567899999987778757
Q 000642 587 LLSF--NCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLR 664 (1377)
Q Consensus 587 Ll~l--~~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lFds~~eF~ewFsk~Ies~~~~~~~lne~ql~rLh~iLkPfmLR 664 (1377)
+..+ +++++|+|||||++|++.|+|++++|+.|..|++.+.|..++.... .+..++..++-.
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~----------------~i~~~~~~l~~~ 362 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYC----------------PVADAVAMLLAG 362 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHH----------------HHHHHHHTTTTS
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH----------------HHHHHHHHHHCC
T ss_conf 9998625785899976876698799999998259301189899999998578----------------899999987426
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 76766631179854999991489999999999999974421011223--8731686999999999999860780000012
Q 000642 665 RVKKDVISELTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSR--GHLNEKKILNLMNIVIQLRKVCNHPELFERN 742 (1377)
Q Consensus 665 R~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~--~~~~~~~~~~LlnlvmqLRKvCnHP~Lfer~ 742 (1377)
. .+++........+.....+..++.... ..........++..++. +.-....+|...
T Consensus 363 ~-------------------~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld--~~g~~~~l~r~~ 421 (968)
T 3dmq_A 363 N-------------------KLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMD--RHGTSRVLFRNT 421 (968)
T ss_dssp C-------------------CCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGG--GCTTTTTEECCC
T ss_pred C-------------------CCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHH
T ss_conf 7-------------------8998899999988420336788750362223337999999999998--617332656322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 58864434568899999998875332345878953344412468876444455631026773367786562023101345
Q 000642 743 EGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVY 822 (1377)
Q Consensus 743 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~~i~~~~~i~ 822 (1377)
+..+
T Consensus 422 -------------------------------r~~i--------------------------------------------- 425 (968)
T 3dmq_A 422 -------------------------------RNGV--------------------------------------------- 425 (968)
T ss_dssp -------------------------------TTTC---------------------------------------------
T ss_pred -------------------------------HHHH---------------------------------------------
T ss_conf -------------------------------6554---------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 66531047999999876544433235789579988621025899999987544442101356786520154567999875
Q 000642 823 QSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRG 902 (1377)
Q Consensus 823 ~s~~~~~~~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 902 (1377)
.+ ............+++....
T Consensus 426 ----------~~---~p~r~~~~~~l~~~~~~~~---------------------------------------------- 446 (968)
T 3dmq_A 426 ----------KG---FPKRELHTIKLPLPTQYQT---------------------------------------------- 446 (968)
T ss_dssp ----------CC---CCCCCCCEEEECCCHHHHH----------------------------------------------
T ss_pred ----------CC---CCHHHEEEEECCCCHHHHH----------------------------------------------
T ss_conf ----------55---6711157523689999999----------------------------------------------
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11255663025762034664311147999998610234468988777773101124568788999744458742000110
Q 000642 903 KVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMT 982 (1377)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~ 982 (1377)
.+....... ..
T Consensus 447 -------------------------------------------~~~~~~~~~------------------~~-------- 457 (968)
T 3dmq_A 447 -------------------------------------------AIKVSGIMG------------------AR-------- 457 (968)
T ss_dssp -------------------------------------------HHHHHHHTT------------------CC--------
T ss_pred -------------------------------------------HHHHHHHHH------------------HH--------
T ss_conf -------------------------------------------999875430------------------21--------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11366468998620124446789999999961145320027776102322221028999998889533234450699999
Q 000642 983 EEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLD 1062 (1377)
Q Consensus 983 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~~~li~~SgKL~~Ld 1062 (1377)
..........+.. ......+ .. +....+..+.|+..|.
T Consensus 458 -~~~~~~~~~~l~p----------------e~~~~~l------------------~~-------~~~~~~~~~~K~~~L~ 495 (968)
T 3dmq_A 458 -KSAEDRARDMLYP----------------ERIYQEF------------------EG-------DNATWWNFDPRVEWLM 495 (968)
T ss_dssp -SSGGGGTHHHHCS----------------GGGTTTT------------------TS-------SSCCTTTTSHHHHHHH
T ss_pred -HHHHHHHHHHCCH----------------HHHHHHH------------------HH-------HHHCCCCCCHHHHHHH
T ss_conf -2667777641085----------------9899876------------------43-------3313568567999999
Q ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCC
Q ss_conf 99999852898599995440489999999973-7994899449999999999999960379-924999824443356676
Q 000642 1063 ILLKRLRAENHRVLLFAQMTKMLNILEDYMNY-RKYRYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINL 1140 (1377)
Q Consensus 1063 ~LL~~Lk~~ghKVLIFSQ~t~mLDlLee~L~~-rg~~y~rLDGStk~edRr~~V~dFq~d~-di~VFLLSTrAGGlGINL 1140 (1377)
.++.. ..++|+|||+++..+++.|.++|.. .|+++.+++|+++..+|..++++|+++. .+.| |++|+++|.|||+
T Consensus 496 ~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl 572 (968)
T 3dmq_A 496 GYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNF 572 (968)
T ss_dssp HHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCC
T ss_pred HHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCE-EEECCHHHCCCCC
T ss_conf 99983--79997899969599999999999987498389984999999999999997479976308-9853343168885
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 757889983799991135584320100599583899999858999999999999789999
Q 000642 1141 TAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQ 1200 (1377)
Q Consensus 1141 TaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~ 1200 (1377)
+.|++||+||++|||....|++||++|+||++.|+||++++++|+|++|++.+..|..+.
T Consensus 573 ~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 573 QFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp TTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 567679995699987899987011430799850899980577719999999998678763
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=405.99 Aligned_cols=464 Identities=16% Similarity=0.181 Sum_probs=291.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCHHHHHHHHHHHC--CC
Q ss_conf 3863469999999999773698779991899768999999999998830558849999275-33999999999989--99
Q 000642 435 GSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFC--PD 511 (1377)
Q Consensus 435 ~~Lr~YQlkGL~WL~nlye~g~nGILADEMGLGKTIQsIAlLa~Lae~~~iwGP~LVVaPa-SlL~NW~~Ei~kf~--P~ 511 (1377)
.+|+|||..++.|+.. + ++||+++||+|||+++++++..+.. +..+++|||||. +++.||.+||.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHHHCCCH
T ss_conf 7863999999999961----9-9899918998789999999999986--4798599997888999999999998747561
Q ss_pred CEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHHH--HHHCCCEEEEEECCCCCCCCCHHHHH--HHH
Q ss_conf 80675318703568886306830000247980199973121220054--44204602999855321368115999--999
Q 000642 512 LKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEK--YFRRVKWQYMVLDEAQAIKSSNSIRW--KTL 587 (1377)
Q Consensus 512 l~vl~y~Gs~~~Rk~lrk~~~~k~l~~~~~~f~VvITSYqlvv~D~~--~l~~ikWqyiILDEAH~IKN~~S~r~--kaL 587 (1377)
..+..++|....... ...| ..++|+|+||+.+..... .+...+|++||+||||.+++..+... +.+
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~---------~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAW---------ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHH---------HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHEEEEECCCCHHHH-HHHC---------CCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 116876077533556-6533---------579899963999999986087156541089997875668888199999999
Q ss_pred -HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -80357736985357888997999999996669999---99789999983100011236897456789999998777875
Q 000642 588 -LSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLF---DSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFML 663 (1377)
Q Consensus 588 -l~l~~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lF---ds~~eF~ewFsk~Ies~~~~~~~lne~ql~rLh~iLkPfmL 663 (1377)
......++|+|||||. |+..+++.++.++.+..+ ...+.+...+..+........ .-......+...+.+++.
T Consensus 151 ~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRV--DLPEIYKEVRKLLREMLR 227 (494)
T ss_dssp HHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEE--CCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHHHHHHH
T ss_conf 73288776999956998-885789999985070005026787587887527874268956--885889999998989999
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 7767666311798549999914899999999-999999744210112238731686999999999999860780000012
Q 000642 664 RRVKKDVISELTTKTEVMVHCKLSSRQQAFY-QAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERN 742 (1377)
Q Consensus 664 RR~KkdV~~eLP~K~E~~v~c~LT~~Qr~lY-~~l~~~is~~~ll~~~~~~~~~~~~~~LlnlvmqLRKvCnHP~Lfer~ 742 (1377)
+|.+......+..... ..++...-.-. ..+...+. .. ....-........++.++....+...
T Consensus 228 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 291 (494)
T 1wp9_A 228 DALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMA------KG--NHDLRGLLLYHAMALKLHHAIELLET---- 291 (494)
T ss_dssp HHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHT------TT--CCSTTTHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHH------CC--CCCHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 9999999735565457----77335578999999998753------35--63113479999888889999999985----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 58864434568899999998875332345878953344412468876444455631026773367786562023101345
Q 000642 743 EGSSYLYFGEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVY 822 (1377)
Q Consensus 743 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~~i~~~~~i~ 822 (1377)
.
T Consensus 292 -------------------------------------------------------------------------~------ 292 (494)
T 1wp9_A 292 -------------------------------------------------------------------------Q------ 292 (494)
T ss_dssp -------------------------------------------------------------------------T------
T ss_pred -------------------------------------------------------------------------H------
T ss_conf -------------------------------------------------------------------------2------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 66531047999999876544433235789579988621025899999987544442101356786520154567999875
Q 000642 823 QSIFSLASGSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRG 902 (1377)
Q Consensus 823 ~s~~~~~~~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 902 (1377)
. ...+...+. .+........
T Consensus 293 ----------------------------~---------~~~~~~~~~---------------~l~~~~~~~~-------- 312 (494)
T 1wp9_A 293 ----------------------------G---------LSALRAYIK---------------KLYEEAKAGS-------- 312 (494)
T ss_dssp ----------------------------C---------HHHHHHHHH---------------HHHHHHHTTC--------
T ss_pred ----------------------------C---------HHHHHHHHH---------------HHHHHHCCCC--------
T ss_conf ----------------------------5---------799999999---------------9987522321--------
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11255663025762034664311147999998610234468988777773101124568788999744458742000110
Q 000642 903 KVRAVTRLLLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMT 982 (1377)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~ 982 (1377)
... ...+
T Consensus 313 -~~~------------------------------------~~~~------------------------------------ 319 (494)
T 1wp9_A 313 -TKA------------------------------------SKEI------------------------------------ 319 (494)
T ss_dssp -CHH------------------------------------HHHH------------------------------------
T ss_pred -CHH------------------------------------HHHH------------------------------------
T ss_conf -145------------------------------------5666------------------------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11366468998620124446789999999961145320027776102322221028999998889533234450699999
Q 000642 983 EEQHDPWLKRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLD 1062 (1377)
Q Consensus 983 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~~~li~~SgKL~~Ld 1062 (1377)
..++........ +. .. ......++|+..|.
T Consensus 320 --~~~~~~~~~~~~----------------------~~----------~~----------------~~~~~~~~k~~~l~ 349 (494)
T 1wp9_A 320 --FSDKRMKKAISL----------------------LV----------QA----------------KEIGLDHPKMDKLK 349 (494)
T ss_dssp --HTSHHHHHHHHH----------------------HH----------HH----------------HHHTCSCHHHHHHH
T ss_pred --HHHHHHHHHHHH----------------------HH----------HH----------------HHCCCCCHHHHHHH
T ss_conf --650788989999----------------------99----------88----------------74589986999999
Q ss_pred HHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECC--------CCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 9999985--28985999954404899999999737994899449--------9999999999999603799249998244
Q 000642 1063 ILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDG--------SSTIMDRRDMVRDFQHRSDIFVFLLSTR 1132 (1377)
Q Consensus 1063 ~LL~~Lk--~~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDG--------Stk~edRr~~V~dFq~d~di~VFLLSTr 1132 (1377)
.+|..+. ..++|+|||++++.+++.+.++|...|+.+.+++| +++..+|+.++++|++ +++.| |++|.
T Consensus 350 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~v-Lv~T~ 427 (494)
T 1wp9_A 350 EIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNV-LVATS 427 (494)
T ss_dssp HHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSE-EEECG
T ss_pred HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEE-EEECC
T ss_conf 99999843689975999976689999999999975998079965665444445899999999999866-99469-99888
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 433566767578899837999911355843201005995838999998589999999999997899999
Q 000642 1133 AGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQ 1201 (1377)
Q Consensus 1133 AGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~ 1201 (1377)
++|.||||++|++||+||++|||....|++||++|.|| +.+|+|++++|+||+|+.++..|+.+.+
T Consensus 428 ~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 428 VGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 41258871437989992898878999998752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=387.27 Aligned_cols=172 Identities=30% Similarity=0.469 Sum_probs=160.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 4450699999999998528985999954404899999999737-994899449999999999999960379924999824
Q 000642 1053 TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYR-KYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mLDlLee~L~~r-g~~y~rLDGStk~edRr~~V~dFq~d~di~VFLLST 1131 (1377)
..|+|+..|.++|..+...|+|+||||||+.++++|+++|... |+.+.+++|+++..+|+.++++|++++++.|||+||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEH
T ss_conf 46899999999999998679969999551999999999998733984799979999999999999832899997899722
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 44335667675788998379999113558432010059958389999985899999999999978999999982986458
Q 000642 1132 RAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQG 1211 (1377)
Q Consensus 1132 rAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~l~~~Vi~gg~~~~ 1211 (1377)
++||.||||++|++||+||+||||..+.||+||+||+||+++|+||+|+++|||||+|++++..|..+.+.+++++....
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~ 252 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWI 252 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHH
T ss_pred HHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 35158867644899999799998518999998523238998569999854988999999999999999999971670543
Q ss_pred CCCCHHHHHHHHC
Q ss_conf 8899886998206
Q 000642 1212 DILAPEDVVSLLL 1224 (1377)
Q Consensus 1212 ~~l~~edi~~ll~ 1224 (1377)
..++.+++..++.
T Consensus 253 ~~~~~~~l~~l~~ 265 (271)
T 1z5z_A 253 TELSTEELRKVIE 265 (271)
T ss_dssp HTSCHHHHHHHHS
T ss_pred HCCCHHHHHHHHC
T ss_conf 2389999999965
No 7
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=365.54 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHHC------------CCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 44506999999999985--28985999954404899999999737------------99489944999999999999996
Q 000642 1053 TDSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNYR------------KYRYLRLDGSSTIMDRRDMVRDF 1118 (1377)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mLDlLee~L~~r------------g~~y~rLDGStk~edRr~~V~dF 1118 (1377)
..++|+..|..+|.+.. ..++|+|||++++++++.|.++|... |+.+..++|+++..+|..++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78979999999999985358997499996979999999999863735366661699657876567888999999999986
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 03799249998244433566767578899837999911355843201005995838999998589999999999997899
Q 000642 1119 QHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNT 1198 (1377)
Q Consensus 1119 q~d~di~VFLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~ 1198 (1377)
++++++.| |++|.++|.||||+.+++||+||++|||....|++|| ||.+++.||+|++.+|+|+++. ....|..
T Consensus 690 r~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~ 763 (936)
T 4a2w_A 690 KTSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEE 763 (936)
T ss_dssp ----CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHH
T ss_pred HCCCCEEE-EEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHH
T ss_conf 31598159-9980726427760558989993899988999996487----7888877999986988999999-9889999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999982986458889988699820
Q 000642 1199 VQQLVMTGGHVQGDILAPEDVVSLL 1223 (1377)
Q Consensus 1199 l~~~Vi~gg~~~~~~l~~edi~~ll 1223 (1377)
+...++..- ..++.+++...+
T Consensus 764 ~~~~~i~~l----~~~~~~~~~~~i 784 (936)
T 4a2w_A 764 MMNKAVEKI----QKWDEETFAKKI 784 (936)
T ss_dssp HHHHHHHHH----HTSCHHHHHHHH
T ss_pred HHHHHHHHH----HCCCHHHHHHHH
T ss_conf 999999986----447999999999
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=362.22 Aligned_cols=376 Identities=16% Similarity=0.262 Sum_probs=278.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCHHHHHHHHHHHCCCC
Q ss_conf 03863469999999999773698779991899768999999999998830558849999275-33999999999989998
Q 000642 434 KGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA-SVLNNWADEISRFCPDL 512 (1377)
Q Consensus 434 ~~~Lr~YQlkGL~WL~nlye~g~nGILADEMGLGKTIQsIAlLa~Lae~~~iwGP~LVVaPa-SlL~NW~~Ei~kf~P~l 512 (1377)
..+|+|||.+++.++.. +.++||+++||+|||++++.++..+ .+++|||||. +++.||..+|.+| +.
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHHHHHC--CC
T ss_conf 99868899999999996----5987999699998899999999980------999999987999999999999967--99
Q ss_pred E-EEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 0-675318703568886306830000247980199973121220054442046029998553213681159999998035
Q 000642 513 K-TLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFN 591 (1377)
Q Consensus 513 ~-vl~y~Gs~~~Rk~lrk~~~~k~l~~~~~~f~VvITSYqlvv~D~~~l~~ikWqyiILDEAH~IKN~~S~r~kaLl~l~ 591 (1377)
. +..++|... ...+|+|+||+.+......+. -+|.++|+||||.+.+.... ..+..+.
T Consensus 159 ~~v~~~~g~~~------------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 159 EYVGEFSGRIK------------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp GGEEEBSSSCB------------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred CCEEEECCCCC------------------CCCCEEEEECHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHH--HHHHHCC
T ss_conf 63699878767------------------767789997689997799736-87778999897578976899--9997357
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77369853578889979999999966699999978999998310001123689745678999999877787577676663
Q 000642 592 CRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVI 671 (1377)
Q Consensus 592 ~rnRLLLTGTPIQNsl~ELwaLL~FL~P~lFds~~eF~ewFsk~Ies~~~~~~~lne~ql~rLh~iLkPfmLRR~KkdV~ 671 (1377)
+.++|+|||||.++...+ ..|..++.|.+.++...++.
T Consensus 218 ~~~~l~lSATp~~~~~~~------------------------------------------~~l~~~~~~~~~~~~~~~l~ 255 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH------------------------------------------EILKEVVGGKVFELFPDSLA 255 (472)
T ss_dssp CSEEEEEESCCCCTTSGG------------------------------------------GSHHHHTCCEEEECCHHHHT
T ss_pred CCEEEEEECCCCCCCCHH------------------------------------------HHHHHHHCCEEEECCHHHHH
T ss_conf 781899932766889778------------------------------------------99999729857654789870
Q ss_pred HC-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCC
Q ss_conf 11-79854999991489999999999999974421011223873168699999999999986078000001258864434
Q 000642 672 SE-LTTKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDNSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSSYLYF 750 (1377)
Q Consensus 672 ~e-LP~K~E~~v~c~LT~~Qr~lY~~l~~~is~~~ll~~~~~~~~~~~~~~LlnlvmqLRKvCnHP~Lfer~~~~s~~~~ 750 (1377)
.. +++.....+.+++++.++..|+.+...+.. .+ ....+. +
T Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l--------------------------~~~~~~----------~ 297 (472)
T 2fwr_A 256 GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQ--FL--------------------------RARGIT----------L 297 (472)
T ss_dssp SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHS--CS--------------------------SSCCCT----------T
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH--HH--------------------------HHCCCC----------C
T ss_conf 676788189999858998999999999999999--99--------------------------864754----------2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 56889999999887533234587895334441246887644445563102677336778656202310134566531047
Q 000642 751 GEIPNSLLPPPFGELEDISFSGVRNPIEYKIPKIVHQEILQSSEILCSAVGHGISRELFQKRFNIFSAENVYQSIFSLAS 830 (1377)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lp~l~~~e~~~~~~~~~~~~~~g~~~~~l~~~~~i~~~~~i~~s~~~~~~ 830 (1377)
. +.
T Consensus 298 ~-----------------------~~------------------------------------------------------ 300 (472)
T 2fwr_A 298 R-----------------------RA------------------------------------------------------ 300 (472)
T ss_dssp T-----------------------CC------------------------------------------------------
T ss_pred C-----------------------CH------------------------------------------------------
T ss_conf 2-----------------------44------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999987654443323578957998862102589999998754444210135678652015456799987511255663
Q 000642 831 GSDASPVKSETFGFTHLMDLSPAEVAFLAKGSFMERLLFAMLRWDRQFLDGILDVFMEAMDGELNENHPDRGKVRAVTRL 910 (1377)
Q Consensus 831 ~~~~~~~~~~~f~~~~~~~ls~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1377)
-++..+...+ ..+.+
T Consensus 301 -----------~~~~~~~~~~-------------------------------------~~~~~----------------- 315 (472)
T 2fwr_A 301 -----------EDFNKIVMAS-------------------------------------GYDER----------------- 315 (472)
T ss_dssp -----------SSSTTTTTTT-------------------------------------CCSSS-----------------
T ss_pred -----------HHHHHHHHHH-------------------------------------CCCHH-----------------
T ss_conf -----------6689999872-------------------------------------36988-----------------
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 02576203466431114799999861023446898877777310112456878899974445874200011011366468
Q 000642 911 LLIPSRSETNLLRRKFTIGPGYDPCEDLVVSHQERLLSNIKLLNATYTFIPQAQAPPINVQCSDRNFTYRMTEEQHDPWL 990 (1377)
Q Consensus 911 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~i~~~c~~~~~~~~~~~~~~~~~~ 990 (1377)
.......... .
T Consensus 316 ------------------------~~~~~~~~~~---------------------------------------------~ 326 (472)
T 2fwr_A 316 ------------------------AYEALRAWEE---------------------------------------------A 326 (472)
T ss_dssp ------------------------SSTTTHHHHH---------------------------------------------H
T ss_pred ------------------------HHHHHHHHHH---------------------------------------------H
T ss_conf ------------------------9999999999---------------------------------------------9
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99862012444678999999996114532002777610232222102899999888953323445069999999999852
Q 000642 991 KRLLIGFARTSENIGPRKPGGPHQLIQEIDSELPVAKPALQLTYQIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRA 1070 (1377)
Q Consensus 991 ~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~s~p~~~~~d~~~li~~SgKL~~Ld~LL~~Lk~ 1070 (1377)
+. -....++|+..|..+|.. .
T Consensus 327 ~~---------------------------------------------------------~~~~~~~k~~~l~~~l~~--~ 347 (472)
T 2fwr_A 327 RR---------------------------------------------------------IAFNSKNKIRKLREILER--H 347 (472)
T ss_dssp HH---------------------------------------------------------HHHSCSHHHHHHHHHHHH--T
T ss_pred HH---------------------------------------------------------HHHCCHHHHHHHHHHHHH--C
T ss_conf 99---------------------------------------------------------763373899999999985--7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 89859999544048999999997379948994499999999999999603799249998244433566767578899837
Q 000642 1071 ENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYE 1150 (1377)
Q Consensus 1071 ~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDGStk~edRr~~V~dFq~d~di~VFLLSTrAGGlGINLTaAdtVIfyD 1150 (1377)
.++|+|||+++..+++.+.++|. +..++|+++..+|+.++++|++ +++.| |++|.+++.|||++.+++||+||
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~ 420 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRA-IVSSQVLDEGIDVPDANVGVIMS 420 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSSCCCSSSCSCCBSEEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHC-CCCCE-EEECCCHHCCCCCCCCCEEEEEC
T ss_conf 89838999797999999999748-----6556289999999999999867-99888-99857051484620286899989
Q ss_pred CCCCHHHHHHHHHCHHCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 999911355843201005995-8389999985899999999999978999
Q 000642 1151 SDWNPTLDLQAMDRAHRLGQT-KDVTVYRLICKETVEEKILQRASQKNTV 1199 (1377)
Q Consensus 1151 sdWNPt~d~QAmdRaHRIGQt-k~VtVYRLItkgTIEErI~~ra~~K~~l 1199 (1377)
++|||....|++||++|.||. +.|+||+|++++|+||+|.++..+|...
T Consensus 421 ~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 421 GSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--------------
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99988899998763157779985399999981998537999999876505
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=356.20 Aligned_cols=148 Identities=20% Similarity=0.262 Sum_probs=131.7
Q ss_pred CCCCHHHHHHHHHHHHH--HCCCEEEEEECCCHHHHHHHHHHHH------------CCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 44506999999999985--2898599995440489999999973------------799489944999999999999996
Q 000642 1053 TDSGKLQTLDILLKRLR--AENHRVLLFAQMTKMLNILEDYMNY------------RKYRYLRLDGSSTIMDRRDMVRDF 1118 (1377)
Q Consensus 1053 ~~SgKL~~Ld~LL~~Lk--~~ghKVLIFSQ~t~mLDlLee~L~~------------rg~~y~rLDGStk~edRr~~V~dF 1118 (1377)
..++|+..|..+|.... ..++|+|||++++.+++.|.++|.. .|+.+..++|+++..+|+.++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 89959999999999985058997089997958999999999974756466552189844775457898999999999985
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 03799249998244433566767578899837999911355843201005995838999998589999999999997899
Q 000642 1119 QHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNT 1198 (1377)
Q Consensus 1119 q~d~di~VFLLSTrAGGlGINLTaAdtVIfyDsdWNPt~d~QAmdRaHRIGQtk~VtVYRLItkgTIEErI~~ra~~K~~ 1198 (1377)
++++++.| |++|+++|.|||++++++||+||++|||..+.|++|| ||.+++.||+|++.+|+|++ ......|..
T Consensus 690 ~~~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~ 763 (797)
T 4a2q_A 690 KTSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEE 763 (797)
T ss_dssp ----CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHH
T ss_pred HCCCCCEE-EEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHH
T ss_conf 13697049-9974805447975108989994899988999985388----87878659999728768899-998889999
Q ss_pred HHHHHHCC
Q ss_conf 99999829
Q 000642 1199 VQQLVMTG 1206 (1377)
Q Consensus 1199 l~~~Vi~g 1206 (1377)
+...++..
T Consensus 764 ~~~~~i~~ 771 (797)
T 4a2q_A 764 MMNKAVEK 771 (797)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 10
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=1.00 E-value=1 Score=346.02 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=122.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 34450699999999998528985999954404899999999737994899449999999999999960379924999824
Q 000642 1052 LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLST 1131 (1377)
Q Consensus 1052 i~~SgKL~~Ld~LL~~Lk~~ghKVLIFSQ~t~mLDlLee~L~~rg~~y~rLDGStk~edRr~~V~dFq~d~di~VFLLST 1131 (1377)
+..|||+..|+.||..+++.||||||||||++|+|+||+||..++++|+|+||++... ++.. .+.++++||+ |
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll-t 177 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF-S 177 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-E
T ss_pred HHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCCCHHH-HHHC-----CCCCCEEEEE-E
T ss_conf 9849529999999999985899799997981699999999952898547179996354-4302-----3688169998-7
Q ss_pred CCCCCCCC-----CCCCCEEEEECCCCCHHHH-HHHHHCHHCC--CCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 44335667-----6757889983799991135-5843201005--99583899999858999999999999
Q 000642 1132 RAGGLGIN-----LTAADTVIFYESDWNPTLD-LQAMDRAHRL--GQTKDVTVYRLICKETVEEKILQRAS 1194 (1377)
Q Consensus 1132 rAGGlGIN-----LTaAdtVIfyDsdWNPt~d-~QAmdRaHRI--GQtk~VtVYRLItkgTIEErI~~ra~ 1194 (1377)
++||.|+| |++||+||.|||+|||+.| .|||+|+||+ ||+++|.||||++.||||+.+++..+
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCC
T ss_conf 88777757653347888889997899898985899999986411589970649999489999999988068
Done!