Query 000644
Match_columns 1377
No_of_seqs 317 out of 382
Neff 5.6
Searched_HMMs 46136
Date Mon Apr 1 21:17:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 3E-72 6.4E-77 732.8 118.4 927 115-1165 835-1916(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 2.3E-63 4.9E-68 633.9 1.5 734 343-1164 2-857 (859)
3 TIGR00606 rad50 rad50. This fa 100.0 1.3E-26 2.8E-31 310.6 99.5 840 252-1295 109-1015(1311)
4 KOG0161 Myosin class II heavy 100.0 2.4E-18 5.1E-23 228.6 131.1 1005 139-1291 838-1919(1930)
5 KOG4674 Uncharacterized conser 99.9 1.1E-12 2.5E-17 172.5 129.6 284 823-1139 910-1197(1822)
6 KOG0962 DNA repair protein RAD 99.9 2.8E-15 6.1E-20 191.7 99.4 241 1022-1291 762-1035(1294)
7 TIGR00606 rad50 rad50. This fa 99.9 2.7E-13 5.9E-18 183.2 111.1 482 663-1188 573-1091(1311)
8 KOG4674 Uncharacterized conser 99.9 4.7E-11 1E-15 157.7 136.7 190 803-997 989-1199(1822)
9 TIGR02168 SMC_prok_B chromosom 99.8 1.1E-09 2.5E-14 146.5 100.5 95 834-928 672-766 (1179)
10 TIGR02168 SMC_prok_B chromosom 99.8 2.8E-10 6.1E-15 152.2 91.2 64 978-1048 964-1027(1179)
11 TIGR02169 SMC_prok_A chromosom 99.8 3E-09 6.4E-14 142.8 99.4 56 833-888 675-730 (1164)
12 PF01576 Myosin_tail_1: Myosin 99.7 1.4E-19 3E-24 232.9 0.7 555 332-946 188-787 (859)
13 COG1196 Smc Chromosome segrega 99.7 1.5E-09 3.3E-14 145.7 90.5 318 281-601 147-492 (1163)
14 TIGR02169 SMC_prok_A chromosom 99.7 1.4E-09 3E-14 146.0 89.0 35 965-999 979-1013(1164)
15 COG1196 Smc Chromosome segrega 99.7 5.1E-08 1.1E-12 131.3 95.9 114 833-946 668-781 (1163)
16 PF10174 Cast: RIM-binding pro 99.7 3.2E-08 7E-13 125.7 84.2 123 312-436 41-163 (775)
17 PRK02224 chromosome segregatio 99.6 2.9E-09 6.3E-14 139.7 73.0 52 382-433 253-304 (880)
18 PRK02224 chromosome segregatio 99.6 1.4E-08 3.1E-13 133.2 73.4 99 832-931 516-614 (880)
19 PRK03918 chromosome segregatio 99.5 4E-07 8.7E-12 119.6 74.6 56 242-297 160-215 (880)
20 PF10174 Cast: RIM-binding pro 99.5 3.3E-06 7.2E-11 107.8 84.4 225 532-763 181-411 (775)
21 PRK03918 chromosome segregatio 99.4 5.3E-06 1.1E-10 109.2 73.0 11 76-86 81-91 (880)
22 KOG0996 Structural maintenance 99.2 0.00012 2.7E-09 94.1 75.9 265 179-459 332-607 (1293)
23 KOG0996 Structural maintenance 99.1 0.00015 3.2E-09 93.4 80.4 127 978-1121 884-1010(1293)
24 PF12128 DUF3584: Protein of u 99.1 0.00052 1.1E-08 93.5 92.1 73 345-420 281-354 (1201)
25 PRK01156 chromosome segregatio 99.1 0.00047 1E-08 91.5 71.0 8 78-85 79-86 (895)
26 PRK01156 chromosome segregatio 99.0 0.00071 1.5E-08 89.8 73.5 23 771-793 586-608 (895)
27 KOG0933 Structural maintenance 98.8 0.0025 5.5E-08 81.4 78.5 198 714-927 682-882 (1174)
28 PF12128 DUF3584: Protein of u 98.7 0.0071 1.5E-07 82.8 85.3 218 711-940 623-861 (1201)
29 KOG0933 Structural maintenance 98.6 0.01 2.2E-07 76.1 68.3 210 360-579 678-895 (1174)
30 KOG0976 Rho/Rac1-interacting s 98.5 0.0087 1.9E-07 74.6 53.0 220 322-558 83-308 (1265)
31 PRK04863 mukB cell division pr 98.5 0.022 4.9E-07 78.6 99.2 187 281-498 413-599 (1486)
32 KOG0250 DNA repair protein RAD 98.5 0.016 3.4E-07 75.7 67.1 127 454-591 338-465 (1074)
33 PF05701 WEMBL: Weak chloropla 98.5 0.013 2.8E-07 73.6 61.8 83 706-791 362-444 (522)
34 KOG0964 Structural maintenance 98.4 0.021 4.7E-07 73.1 76.2 106 824-946 666-771 (1200)
35 KOG4673 Transcription factor T 98.4 0.018 3.8E-07 71.2 60.2 292 453-792 346-657 (961)
36 PF00261 Tropomyosin: Tropomyo 98.3 0.00047 1E-08 77.9 29.2 212 378-610 6-217 (237)
37 KOG4673 Transcription factor T 98.3 0.028 6.2E-07 69.5 57.4 233 303-549 409-659 (961)
38 PRK04863 mukB cell division pr 98.3 0.074 1.6E-06 73.7 96.0 128 706-853 989-1116(1486)
39 PRK04778 septation ring format 98.2 0.052 1.1E-06 68.9 50.6 113 388-517 99-216 (569)
40 KOG0977 Nuclear envelope prote 98.2 0.0051 1.1E-07 76.0 36.0 232 335-579 96-334 (546)
41 PRK04778 septation ring format 98.2 0.059 1.3E-06 68.4 50.7 119 303-431 105-228 (569)
42 KOG0977 Nuclear envelope prote 98.1 0.0076 1.7E-07 74.5 36.1 129 454-593 93-221 (546)
43 PF05701 WEMBL: Weak chloropla 98.1 0.063 1.4E-06 67.5 60.1 156 381-546 28-191 (522)
44 PF07888 CALCOCO1: Calcium bin 98.1 0.062 1.4E-06 66.7 44.8 46 544-589 195-240 (546)
45 PF07888 CALCOCO1: Calcium bin 98.1 0.067 1.4E-06 66.5 43.2 28 808-835 375-402 (546)
46 PF00038 Filament: Intermediat 98.1 0.02 4.2E-07 67.0 37.4 76 517-592 65-140 (312)
47 PF05483 SCP-1: Synaptonemal c 98.1 0.08 1.7E-06 66.1 89.9 136 772-921 464-599 (786)
48 PF07111 HCR: Alpha helical co 98.0 0.12 2.5E-06 65.2 68.7 149 816-997 430-589 (739)
49 PF00038 Filament: Intermediat 98.0 0.031 6.7E-07 65.4 35.9 104 498-601 3-114 (312)
50 KOG0962 DNA repair protein RAD 97.9 0.28 6E-06 66.0 101.0 174 248-438 104-313 (1294)
51 KOG0250 DNA repair protein RAD 97.9 0.24 5.1E-06 65.2 64.0 35 769-803 440-474 (1074)
52 KOG4643 Uncharacterized coiled 97.9 0.22 4.9E-06 64.5 46.5 172 770-943 406-591 (1195)
53 PF05483 SCP-1: Synaptonemal c 97.8 0.2 4.3E-06 62.8 85.9 178 741-946 496-673 (786)
54 KOG0612 Rho-associated, coiled 97.8 0.31 6.8E-06 64.5 43.0 156 385-561 492-650 (1317)
55 PF05557 MAD: Mitotic checkpoi 97.8 5.4E-05 1.2E-09 98.0 9.7 89 899-994 500-588 (722)
56 KOG0994 Extracellular matrix g 97.8 0.34 7.4E-06 63.4 55.5 98 849-946 1418-1520(1758)
57 PF05557 MAD: Mitotic checkpoi 97.7 7E-05 1.5E-09 96.9 8.0 54 508-561 159-212 (722)
58 KOG0976 Rho/Rac1-interacting s 97.6 0.43 9.4E-06 60.4 65.9 156 770-939 415-584 (1265)
59 KOG4643 Uncharacterized coiled 97.6 0.62 1.3E-05 60.7 51.4 157 460-616 274-448 (1195)
60 COG0419 SbcC ATPase involved i 97.5 0.8 1.7E-05 61.6 80.6 140 454-594 299-442 (908)
61 KOG1029 Endocytic adaptor prot 97.5 0.32 6.9E-06 61.4 35.3 137 471-607 361-503 (1118)
62 KOG0964 Structural maintenance 97.5 0.77 1.7E-05 59.7 84.4 186 660-859 678-874 (1200)
63 PHA02562 46 endonuclease subun 97.4 0.055 1.2E-06 68.2 28.1 56 388-443 214-269 (562)
64 KOG0994 Extracellular matrix g 97.3 1.2 2.6E-05 58.7 56.2 56 692-747 1581-1636(1758)
65 PF05622 HOOK: HOOK protein; 97.3 4.7E-05 1E-09 98.4 0.0 60 832-891 363-422 (713)
66 PF15070 GOLGA2L5: Putative go 97.3 1 2.2E-05 57.7 48.1 255 721-996 158-445 (617)
67 PRK11637 AmiB activator; Provi 97.3 0.13 2.7E-06 63.2 28.8 84 342-432 44-127 (428)
68 KOG0978 E3 ubiquitin ligase in 97.3 1.2 2.6E-05 57.2 62.2 86 1035-1131 538-623 (698)
69 TIGR03185 DNA_S_dndD DNA sulfu 97.2 0.92 2E-05 58.8 36.6 73 1047-1121 389-461 (650)
70 PRK11637 AmiB activator; Provi 97.1 0.39 8.5E-06 59.0 29.7 20 383-402 99-118 (428)
71 PF05622 HOOK: HOOK protein; 97.0 0.00039 8.3E-09 90.1 3.6 185 715-921 458-648 (713)
72 PF09728 Taxilin: Myosin-like 97.0 1.2 2.7E-05 52.6 38.6 259 657-924 47-308 (309)
73 PF06160 EzrA: Septation ring 96.9 2.3 5E-05 54.3 57.8 149 832-997 379-528 (560)
74 COG1340 Uncharacterized archae 96.8 1.6 3.4E-05 50.9 36.3 67 348-414 30-96 (294)
75 PF13514 AAA_27: AAA domain 96.8 4.6 0.0001 55.7 87.9 41 968-1008 732-772 (1111)
76 PF09726 Macoilin: Transmembra 96.7 1.2 2.6E-05 57.9 30.8 111 644-754 543-653 (697)
77 PF06160 EzrA: Septation ring 96.7 3.4 7.4E-05 52.8 59.3 168 303-506 101-273 (560)
78 PF09728 Taxilin: Myosin-like 96.6 2.5 5.5E-05 50.0 38.2 95 650-744 213-307 (309)
79 PF13514 AAA_27: AAA domain 96.5 6.5 0.00014 54.3 89.8 27 1046-1072 747-773 (1111)
80 PF12718 Tropomyosin_1: Tropom 96.5 0.23 5.1E-06 52.2 18.9 102 491-596 6-107 (143)
81 PF09726 Macoilin: Transmembra 96.4 1.8 3.9E-05 56.4 30.0 103 633-735 546-655 (697)
82 KOG0963 Transcription factor/C 96.4 4.3 9.3E-05 51.3 45.2 38 833-870 60-97 (629)
83 PF15619 Lebercilin: Ciliary p 96.4 0.73 1.6E-05 50.9 22.9 66 373-438 12-77 (194)
84 KOG0946 ER-Golgi vesicle-tethe 96.4 2 4.3E-05 55.2 28.4 96 315-414 662-757 (970)
85 KOG0612 Rho-associated, coiled 96.3 7.6 0.00016 52.4 63.6 139 778-922 699-838 (1317)
86 PF15070 GOLGA2L5: Putative go 96.2 6.2 0.00013 50.9 47.9 33 719-751 282-314 (617)
87 KOG0978 E3 ubiquitin ligase in 96.2 6.3 0.00014 50.9 68.9 94 814-911 551-644 (698)
88 KOG1029 Endocytic adaptor prot 96.2 6.2 0.00013 50.6 34.5 31 503-533 321-351 (1118)
89 PF12718 Tropomyosin_1: Tropom 96.1 0.44 9.5E-06 50.2 18.4 96 502-601 3-98 (143)
90 KOG0999 Microtubule-associated 96.1 5.6 0.00012 49.3 70.1 54 927-995 405-458 (772)
91 COG1579 Zn-ribbon protein, pos 95.9 0.81 1.8E-05 52.0 20.5 124 311-439 18-141 (239)
92 PF05667 DUF812: Protein of un 95.9 5.2 0.00011 51.3 29.9 47 896-942 343-389 (594)
93 COG1340 Uncharacterized archae 95.9 5 0.00011 46.9 36.9 69 525-593 11-79 (294)
94 KOG0995 Centromere-associated 95.9 7.5 0.00016 48.8 40.6 108 311-422 260-367 (581)
95 PF15619 Lebercilin: Ciliary p 95.7 4.4 9.5E-05 45.0 25.2 82 512-593 11-92 (194)
96 PF09730 BicD: Microtubule-ass 95.7 11 0.00024 49.3 61.5 101 770-873 357-460 (717)
97 PF05667 DUF812: Protein of un 95.4 12 0.00026 48.1 32.6 195 778-992 393-591 (594)
98 COG1579 Zn-ribbon protein, pos 95.4 1.9 4.2E-05 49.0 20.7 142 1022-1190 32-174 (239)
99 KOG0946 ER-Golgi vesicle-tethe 95.3 8.9 0.00019 49.7 27.7 139 441-579 627-775 (970)
100 KOG1003 Actin filament-coating 94.7 8.4 0.00018 42.5 24.8 198 654-869 5-202 (205)
101 KOG1003 Actin filament-coating 94.7 8.4 0.00018 42.4 26.8 69 533-601 3-71 (205)
102 PF09730 BicD: Microtubule-ass 94.5 22 0.00048 46.6 62.2 28 1217-1244 632-659 (717)
103 TIGR03185 DNA_S_dndD DNA sulfu 94.3 25 0.00053 45.9 34.9 73 506-578 391-465 (650)
104 PF09755 DUF2046: Uncharacteri 94.2 15 0.00033 43.3 33.4 263 830-1160 25-294 (310)
105 PF13851 GAS: Growth-arrest sp 94.2 8.6 0.00019 42.9 21.9 150 1022-1203 28-177 (201)
106 KOG0018 Structural maintenance 94.2 30 0.00064 46.6 73.5 138 375-520 215-352 (1141)
107 KOG4593 Mitotic checkpoint pro 94.0 26 0.00057 45.1 64.1 59 705-763 457-515 (716)
108 PF08317 Spc7: Spc7 kinetochor 93.6 16 0.00035 43.6 24.2 149 313-470 145-293 (325)
109 KOG0995 Centromere-associated 93.6 27 0.00059 44.1 44.3 124 704-844 427-554 (581)
110 PF04849 HAP1_N: HAP1 N-termin 93.4 21 0.00045 42.2 25.5 203 516-749 86-302 (306)
111 KOG0018 Structural maintenance 93.4 40 0.00088 45.4 73.4 255 682-946 677-970 (1141)
112 PRK09039 hypothetical protein; 93.3 5.9 0.00013 47.6 19.9 114 483-596 65-178 (343)
113 KOG1937 Uncharacterized conser 93.3 26 0.00057 43.0 30.7 171 427-601 246-428 (521)
114 COG4942 Membrane-bound metallo 93.2 27 0.00059 42.9 29.7 60 377-436 49-108 (420)
115 PRK09039 hypothetical protein; 93.1 4.7 0.0001 48.5 18.6 61 483-543 44-104 (343)
116 PF09789 DUF2353: Uncharacteri 93.0 20 0.00043 42.7 23.1 149 450-600 65-220 (319)
117 COG4942 Membrane-bound metallo 92.6 32 0.0007 42.3 30.4 48 699-746 193-240 (420)
118 COG3883 Uncharacterized protei 92.5 25 0.00054 40.8 28.6 23 566-588 70-92 (265)
119 TIGR03007 pepcterm_ChnLen poly 92.4 8.6 0.00019 48.2 20.7 21 1244-1265 270-290 (498)
120 PF09789 DUF2353: Uncharacteri 92.4 17 0.00037 43.2 21.4 29 896-924 190-218 (319)
121 COG4372 Uncharacterized protei 92.3 32 0.00068 41.5 28.1 83 389-471 83-165 (499)
122 PF15450 DUF4631: Domain of un 92.3 39 0.00084 42.4 54.9 121 816-946 150-281 (531)
123 PF10473 CENP-F_leu_zip: Leuci 92.0 19 0.0004 38.2 20.4 94 651-744 15-108 (140)
124 PF15450 DUF4631: Domain of un 91.9 43 0.00093 42.0 57.1 105 407-517 91-211 (531)
125 KOG0963 Transcription factor/C 91.8 48 0.001 42.4 47.0 239 339-601 16-267 (629)
126 PF14915 CCDC144C: CCDC144C pr 91.5 34 0.00074 40.2 39.1 59 548-606 186-244 (305)
127 PRK11281 hypothetical protein; 91.5 75 0.0016 44.1 43.8 125 905-1036 124-249 (1113)
128 PF06008 Laminin_I: Laminin Do 91.5 32 0.00069 39.8 29.5 72 968-1039 34-105 (264)
129 PF14662 CCDC155: Coiled-coil 91.0 29 0.00063 38.4 24.7 53 529-581 132-184 (193)
130 KOG4593 Mitotic checkpoint pro 90.6 64 0.0014 41.8 64.1 80 806-885 362-444 (716)
131 PF10473 CENP-F_leu_zip: Leuci 90.5 26 0.00056 37.1 20.2 63 676-738 54-116 (140)
132 PF15066 CAGE1: Cancer-associa 90.2 56 0.0012 40.4 23.8 82 1089-1191 356-437 (527)
133 PF08614 ATG16: Autophagy prot 90.1 2.6 5.7E-05 46.4 11.4 112 490-601 72-183 (194)
134 PF06008 Laminin_I: Laminin Do 89.1 49 0.0011 38.2 30.7 67 667-740 185-251 (264)
135 COG4477 EzrA Negative regulato 88.9 76 0.0016 40.1 44.7 154 771-928 353-528 (570)
136 PF09787 Golgin_A5: Golgin sub 88.5 83 0.0018 40.1 31.8 215 897-1146 150-381 (511)
137 PF13851 GAS: Growth-arrest sp 88.3 48 0.001 37.1 23.3 139 650-795 31-173 (201)
138 PF13870 DUF4201: Domain of un 88.3 42 0.00091 36.5 21.0 126 338-473 42-172 (177)
139 PF05010 TACC: Transforming ac 88.2 50 0.0011 37.2 27.5 13 585-597 71-83 (207)
140 PF14915 CCDC144C: CCDC144C pr 88.2 61 0.0013 38.2 39.9 35 380-414 56-90 (305)
141 PF05911 DUF869: Plant protein 88.1 1.1E+02 0.0023 40.9 58.5 123 452-578 168-309 (769)
142 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.8 37 0.00081 35.3 18.8 33 767-799 93-125 (132)
143 PLN02939 transferase, transfer 87.6 59 0.0013 44.1 22.8 221 835-1140 166-396 (977)
144 TIGR01005 eps_transp_fam exopo 87.4 1E+02 0.0022 41.0 25.2 43 1148-1190 352-394 (754)
145 KOG0999 Microtubule-associated 87.0 96 0.0021 39.2 58.9 126 476-601 48-174 (772)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.8 43 0.00093 34.9 18.6 123 1086-1243 8-130 (132)
147 PF05010 TACC: Transforming ac 86.8 60 0.0013 36.6 28.1 101 650-763 87-187 (207)
148 TIGR03017 EpsF chain length de 86.6 81 0.0018 38.9 22.4 14 1358-1371 399-412 (444)
149 PF09787 Golgin_A5: Golgin sub 85.9 1.1E+02 0.0024 38.9 37.6 29 899-927 106-134 (511)
150 PF00769 ERM: Ezrin/radixin/mo 85.9 23 0.0005 40.8 15.9 105 830-934 10-114 (246)
151 PF15066 CAGE1: Cancer-associa 85.9 1E+02 0.0022 38.3 24.3 60 1077-1136 386-445 (527)
152 PF06705 SF-assemblin: SF-asse 85.7 73 0.0016 36.5 25.6 175 767-946 29-213 (247)
153 COG5185 HEC1 Protein involved 85.5 1.1E+02 0.0023 38.2 36.8 147 665-815 262-418 (622)
154 PF08317 Spc7: Spc7 kinetochor 84.8 96 0.0021 37.1 29.2 55 685-739 213-267 (325)
155 PF08614 ATG16: Autophagy prot 84.7 6.4 0.00014 43.5 10.4 75 689-763 103-177 (194)
156 PRK11281 hypothetical protein; 84.6 1.9E+02 0.0041 40.4 41.1 54 511-564 126-179 (1113)
157 PF12325 TMF_TATA_bd: TATA ele 84.6 25 0.00055 36.2 13.8 45 1077-1121 12-56 (120)
158 PF04849 HAP1_N: HAP1 N-termin 84.0 1E+02 0.0022 36.7 27.2 67 696-762 228-294 (306)
159 TIGR00634 recN DNA repair prot 83.9 1.3E+02 0.0028 38.7 23.0 66 1228-1294 304-369 (563)
160 PF05911 DUF869: Plant protein 83.9 1.7E+02 0.0037 39.2 58.9 49 712-760 261-309 (769)
161 PRK09841 cryptic autophosphory 82.7 1E+02 0.0022 41.0 21.9 110 1167-1295 269-387 (726)
162 PRK11519 tyrosine kinase; Prov 82.7 1E+02 0.0022 40.9 21.9 111 1167-1295 269-387 (719)
163 TIGR01005 eps_transp_fam exopo 82.4 1.9E+02 0.004 38.6 24.6 27 513-539 194-220 (754)
164 KOG0804 Cytoplasmic Zn-finger 82.1 39 0.00085 41.6 16.0 114 478-601 339-453 (493)
165 PF14073 Cep57_CLD: Centrosome 81.6 90 0.0019 34.4 18.6 104 829-932 61-164 (178)
166 COG1842 PspA Phage shock prote 81.6 1E+02 0.0023 35.2 23.8 186 309-501 23-220 (225)
167 smart00787 Spc7 Spc7 kinetocho 81.5 1.3E+02 0.0028 36.1 22.4 121 313-436 140-260 (312)
168 TIGR01010 BexC_CtrB_KpsE polys 81.2 1.3E+02 0.0029 36.2 21.1 110 1167-1295 172-295 (362)
169 PF06705 SF-assemblin: SF-asse 81.1 1.1E+02 0.0024 35.1 30.4 148 772-935 5-154 (247)
170 PF09304 Cortex-I_coil: Cortex 80.9 16 0.00035 36.8 10.3 71 863-935 12-82 (107)
171 PF04912 Dynamitin: Dynamitin 80.8 1.5E+02 0.0032 36.4 23.2 18 980-997 210-227 (388)
172 TIGR01843 type_I_hlyD type I s 80.4 1.5E+02 0.0031 36.1 23.5 29 566-594 141-169 (423)
173 TIGR02977 phageshock_pspA phag 80.3 1.1E+02 0.0024 34.6 23.5 122 313-436 27-148 (219)
174 KOG4809 Rab6 GTPase-interactin 80.2 1.8E+02 0.0039 37.0 38.3 77 505-581 330-406 (654)
175 KOG1850 Myosin-like coiled-coi 80.1 1.4E+02 0.003 35.6 35.9 113 650-762 219-331 (391)
176 PRK10929 putative mechanosensi 80.0 2.7E+02 0.0058 38.9 42.3 15 474-488 147-161 (1109)
177 PF06818 Fez1: Fez1; InterPro 79.7 1.1E+02 0.0024 34.3 20.2 182 324-523 10-201 (202)
178 TIGR01843 type_I_hlyD type I s 78.8 1.6E+02 0.0035 35.7 22.9 45 710-754 138-182 (423)
179 PF12325 TMF_TATA_bd: TATA ele 77.6 55 0.0012 33.9 13.4 27 454-480 69-95 (120)
180 PF00769 ERM: Ezrin/radixin/mo 77.5 55 0.0012 37.7 15.0 91 837-934 38-128 (246)
181 KOG0249 LAR-interacting protei 77.4 2.4E+02 0.0053 37.0 24.3 130 770-915 110-257 (916)
182 PF10168 Nup88: Nuclear pore c 77.1 66 0.0014 42.6 17.3 100 106-212 567-670 (717)
183 PRK10929 putative mechanosensi 76.8 3.3E+02 0.0071 38.2 41.2 24 874-897 493-516 (1109)
184 PF12795 MscS_porin: Mechanose 76.8 1.4E+02 0.0031 34.0 21.3 57 509-565 81-137 (240)
185 PF10481 CENP-F_N: Cenp-F N-te 76.3 63 0.0014 37.5 14.5 94 476-569 16-109 (307)
186 PF15035 Rootletin: Ciliary ro 75.5 1.4E+02 0.003 33.1 17.1 157 1086-1267 7-176 (182)
187 PF10168 Nup88: Nuclear pore c 75.3 2.3E+02 0.0051 37.7 21.5 33 1255-1287 683-715 (717)
188 COG4026 Uncharacterized protei 74.4 23 0.0005 39.7 10.2 78 358-435 134-211 (290)
189 PF04912 Dynamitin: Dynamitin 73.9 2.2E+02 0.0049 34.9 21.6 34 895-928 87-120 (388)
190 smart00787 Spc7 Spc7 kinetocho 73.8 2.1E+02 0.0045 34.4 28.7 59 682-740 205-263 (312)
191 PF06005 DUF904: Protein of un 73.5 18 0.00038 34.1 7.9 65 862-926 6-70 (72)
192 TIGR03017 EpsF chain length de 72.7 2.4E+02 0.0053 34.8 25.7 29 974-1002 173-201 (444)
193 PF15294 Leu_zip: Leucine zipp 72.2 1.1E+02 0.0024 35.9 15.6 120 1084-1212 128-251 (278)
194 TIGR00634 recN DNA repair prot 71.8 3E+02 0.0066 35.5 23.4 12 423-434 210-221 (563)
195 PF04012 PspA_IM30: PspA/IM30 70.9 1.8E+02 0.004 32.5 23.4 118 313-432 26-143 (221)
196 PF04111 APG6: Autophagy prote 70.4 35 0.00076 40.7 11.5 91 846-936 43-133 (314)
197 PF04012 PspA_IM30: PspA/IM30 69.9 1.9E+02 0.0041 32.4 20.4 44 481-524 94-137 (221)
198 COG1842 PspA Phage shock prote 69.9 2.1E+02 0.0045 32.8 20.5 146 770-920 22-184 (225)
199 COG4477 EzrA Negative regulato 69.4 3.3E+02 0.0071 34.8 48.4 190 349-548 278-489 (570)
200 PRK10698 phage shock protein P 67.2 2.3E+02 0.005 32.3 23.5 122 313-436 27-148 (222)
201 COG5185 HEC1 Protein involved 66.5 3.4E+02 0.0075 34.0 36.4 29 567-595 485-513 (622)
202 PF11559 ADIP: Afadin- and alp 66.2 1.1E+02 0.0024 32.3 13.2 93 1040-1143 57-149 (151)
203 KOG1899 LAR transmembrane tyro 64.5 4.2E+02 0.0092 34.4 19.4 142 329-480 123-265 (861)
204 PF14988 DUF4515: Domain of un 63.4 2.6E+02 0.0056 31.6 24.9 54 1137-1190 50-103 (206)
205 PRK10246 exonuclease subunit S 63.3 5.9E+02 0.013 35.6 81.7 50 756-805 754-803 (1047)
206 PF10212 TTKRSYEDQ: Predicted 63.2 1.4E+02 0.003 37.9 14.8 98 334-434 416-513 (518)
207 PF10146 zf-C4H2: Zinc finger- 62.9 1.7E+02 0.0036 33.7 14.4 52 377-428 50-101 (230)
208 COG3074 Uncharacterized protei 62.7 46 0.00099 31.1 7.9 61 807-888 7-67 (79)
209 PF10146 zf-C4H2: Zinc finger- 62.4 2.4E+02 0.0052 32.4 15.6 16 682-697 54-69 (230)
210 KOG4360 Uncharacterized coiled 61.4 3.6E+02 0.0077 34.3 17.4 87 677-763 208-294 (596)
211 PF07106 TBPIP: Tat binding pr 60.8 87 0.0019 33.8 11.4 64 1044-1109 74-137 (169)
212 PF10212 TTKRSYEDQ: Predicted 60.7 4.2E+02 0.009 33.9 18.2 108 823-943 405-514 (518)
213 PF04582 Reo_sigmaC: Reovirus 60.3 13 0.00028 44.2 5.3 94 514-607 57-150 (326)
214 PF04582 Reo_sigmaC: Reovirus 60.1 17 0.00036 43.3 6.1 70 520-589 84-153 (326)
215 KOG4787 Uncharacterized conser 60.0 3.5E+02 0.0076 34.7 17.1 53 1054-1109 435-487 (852)
216 PF10498 IFT57: Intra-flagella 59.1 3.7E+02 0.008 33.0 17.2 46 1232-1278 308-356 (359)
217 KOG0971 Microtubule-associated 58.1 6.3E+02 0.014 34.3 74.2 115 480-598 433-547 (1243)
218 PF12795 MscS_porin: Mechanose 57.4 3.4E+02 0.0074 31.0 21.9 24 502-525 41-64 (240)
219 PF07889 DUF1664: Protein of u 56.0 1.7E+02 0.0038 30.6 11.9 19 483-501 48-66 (126)
220 COG3206 GumC Uncharacterized p 55.6 5.1E+02 0.011 32.4 23.6 42 1255-1296 350-391 (458)
221 PRK10246 exonuclease subunit S 55.4 7.7E+02 0.017 34.5 83.1 25 387-411 257-281 (1047)
222 PRK10884 SH3 domain-containing 55.3 1.4E+02 0.0031 33.6 12.1 37 1170-1210 91-127 (206)
223 PF10481 CENP-F_N: Cenp-F N-te 54.2 4.3E+02 0.0093 31.1 16.2 36 715-750 94-129 (307)
224 PF10498 IFT57: Intra-flagella 53.9 2.6E+02 0.0057 34.2 14.9 107 322-438 211-317 (359)
225 KOG1853 LIS1-interacting prote 52.7 4.3E+02 0.0093 30.7 21.2 29 573-601 49-77 (333)
226 PF05266 DUF724: Protein of un 52.4 3.8E+02 0.0082 30.0 17.0 80 355-434 106-185 (190)
227 PRK10884 SH3 domain-containing 52.3 1.8E+02 0.0039 32.8 12.3 11 518-528 98-108 (206)
228 KOG1853 LIS1-interacting prote 51.9 4.4E+02 0.0095 30.6 20.9 38 841-878 135-172 (333)
229 PF05266 DUF724: Protein of un 51.8 3.7E+02 0.0081 30.0 14.5 108 490-601 67-177 (190)
230 PF15397 DUF4618: Domain of un 51.0 4.7E+02 0.01 30.7 27.2 37 1256-1292 185-221 (258)
231 KOG0249 LAR-interacting protei 50.9 7.4E+02 0.016 32.9 21.6 69 716-787 216-284 (916)
232 PF06818 Fez1: Fez1; InterPro 50.8 4.2E+02 0.009 30.0 19.7 17 660-676 156-172 (202)
233 PF14197 Cep57_CLD_2: Centroso 50.5 83 0.0018 29.5 7.8 21 900-920 45-65 (69)
234 PRK15422 septal ring assembly 49.8 68 0.0015 30.8 7.1 37 890-926 41-77 (79)
235 PF08826 DMPK_coil: DMPK coile 48.9 1.9E+02 0.0042 26.6 9.6 58 364-421 2-59 (61)
236 COG4026 Uncharacterized protei 48.6 1.7E+02 0.0037 33.2 11.0 76 846-928 135-210 (290)
237 KOG4809 Rab6 GTPase-interactin 48.5 7.1E+02 0.015 32.0 30.4 78 534-611 331-408 (654)
238 PF11932 DUF3450: Protein of u 47.5 4.7E+02 0.01 30.1 15.1 73 657-729 39-111 (251)
239 PF12329 TMF_DNA_bd: TATA elem 47.5 2.3E+02 0.005 26.9 10.3 48 519-566 11-58 (74)
240 KOG0244 Kinesin-like protein [ 46.3 9.5E+02 0.021 32.9 28.8 88 833-922 331-418 (913)
241 PF15397 DUF4618: Domain of un 46.3 5.5E+02 0.012 30.1 26.7 156 707-888 65-221 (258)
242 PF04728 LPP: Lipoprotein leuc 46.2 1.2E+02 0.0026 27.4 7.7 42 1083-1124 5-46 (56)
243 KOG0982 Centrosomal protein Nu 46.1 6.9E+02 0.015 31.2 23.1 213 517-732 219-433 (502)
244 PRK09343 prefoldin subunit bet 44.8 2.8E+02 0.0061 28.6 11.5 64 1232-1295 45-109 (121)
245 PF00901 Orbi_VP5: Orbivirus o 44.7 7.2E+02 0.016 31.6 16.5 139 46-206 58-208 (508)
246 TIGR01000 bacteriocin_acc bact 44.7 7.3E+02 0.016 31.1 23.2 16 481-496 175-190 (457)
247 PF07889 DUF1664: Protein of u 44.3 3.2E+02 0.0069 28.7 11.7 60 1126-1185 60-123 (126)
248 COG2433 Uncharacterized conser 44.0 2.9E+02 0.0062 35.8 13.2 14 284-297 270-283 (652)
249 KOG4438 Centromere-associated 43.7 7.5E+02 0.016 30.9 36.0 57 705-763 336-392 (446)
250 PRK15048 methyl-accepting chem 43.4 8.1E+02 0.018 31.2 34.2 20 1141-1161 367-386 (553)
251 PF09755 DUF2046: Uncharacteri 43.3 6.6E+02 0.014 30.2 36.5 115 678-795 153-284 (310)
252 PF07111 HCR: Alpha helical co 43.3 9.4E+02 0.02 32.0 73.6 103 1084-1190 510-614 (739)
253 PF14197 Cep57_CLD_2: Centroso 42.6 2.4E+02 0.0051 26.5 9.5 60 518-577 3-62 (69)
254 PF15254 CCDC14: Coiled-coil d 42.5 1E+03 0.022 32.1 18.8 62 1012-1073 499-560 (861)
255 TIGR02977 phageshock_pspA phag 42.2 5.5E+02 0.012 29.0 20.2 62 461-522 14-75 (219)
256 KOG2629 Peroxisomal membrane a 42.2 1.3E+02 0.0029 35.4 9.4 75 1220-1295 124-199 (300)
257 PF14282 FlxA: FlxA-like prote 41.9 1.3E+02 0.0028 30.3 8.3 60 1056-1115 19-78 (106)
258 TIGR02338 gimC_beta prefoldin, 41.5 3.4E+02 0.0074 27.3 11.3 40 1255-1294 65-104 (110)
259 PF07106 TBPIP: Tat binding pr 41.5 1.6E+02 0.0034 31.8 9.6 29 340-368 81-109 (169)
260 PRK15178 Vi polysaccharide exp 41.5 8.3E+02 0.018 30.8 19.3 91 1167-1274 244-338 (434)
261 KOG1899 LAR transmembrane tyro 40.0 9.9E+02 0.021 31.3 20.7 32 570-601 168-199 (861)
262 PRK04406 hypothetical protein; 39.3 1.8E+02 0.0039 27.7 8.3 39 518-556 9-47 (75)
263 PF03962 Mnd1: Mnd1 family; I 39.2 5.8E+02 0.013 28.4 14.0 62 1219-1281 104-166 (188)
264 TIGR02338 gimC_beta prefoldin, 38.9 4.2E+02 0.0091 26.7 12.2 22 715-736 80-101 (110)
265 PF11932 DUF3450: Protein of u 38.9 6.1E+02 0.013 29.1 14.4 41 546-586 54-94 (251)
266 COG5336 Uncharacterized protei 38.9 20 0.00043 36.2 2.0 20 1354-1374 48-67 (116)
267 COG2433 Uncharacterized conser 38.9 4.4E+02 0.0096 34.2 13.7 76 333-412 431-506 (652)
268 KOG1937 Uncharacterized conser 38.1 9.3E+02 0.02 30.4 33.8 84 516-600 289-376 (521)
269 cd00632 Prefoldin_beta Prefold 37.7 3.2E+02 0.007 27.2 10.4 39 1254-1292 60-98 (105)
270 PF08826 DMPK_coil: DMPK coile 37.7 3.3E+02 0.0072 25.1 9.7 41 561-601 17-57 (61)
271 PF05278 PEARLI-4: Arabidopsis 37.4 2.1E+02 0.0045 33.6 10.0 81 835-915 182-262 (269)
272 PF02403 Seryl_tRNA_N: Seryl-t 37.4 4E+02 0.0087 26.4 11.1 68 1214-1283 32-100 (108)
273 PRK11519 tyrosine kinase; Prov 36.9 1E+03 0.022 31.8 17.7 32 970-1001 265-296 (719)
274 PRK15396 murein lipoprotein; P 36.8 1.5E+02 0.0033 28.5 7.4 46 1082-1127 26-71 (78)
275 PF13805 Pil1: Eisosome compon 36.7 7.3E+02 0.016 29.3 14.3 87 1100-1190 101-190 (271)
276 KOG0288 WD40 repeat protein Ti 36.7 4.4E+02 0.0095 32.7 12.8 75 872-946 11-85 (459)
277 TIGR01069 mutS2 MutS2 family p 36.4 8.4E+02 0.018 33.0 16.8 22 294-315 488-509 (771)
278 PF10205 KLRAQ: Predicted coil 35.7 3.5E+02 0.0076 27.5 9.9 66 545-610 2-67 (102)
279 PRK10361 DNA recombination pro 35.5 1.1E+03 0.023 30.3 22.4 36 454-489 82-117 (475)
280 COG3074 Uncharacterized protei 35.4 3.9E+02 0.0085 25.3 9.9 58 540-597 10-67 (79)
281 PRK09343 prefoldin subunit bet 34.7 5.3E+02 0.012 26.6 14.3 45 1086-1134 5-49 (121)
282 PF04102 SlyX: SlyX; InterPro 34.5 1.6E+02 0.0035 27.4 7.1 24 522-545 6-29 (69)
283 PF02050 FliJ: Flagellar FliJ 34.3 4.4E+02 0.0096 25.5 14.2 56 895-950 45-100 (123)
284 PF04645 DUF603: Protein of un 34.1 6.8E+02 0.015 27.7 13.1 53 490-551 73-129 (181)
285 PF08647 BRE1: BRE1 E3 ubiquit 34.1 4.7E+02 0.01 25.8 12.5 75 341-415 6-80 (96)
286 PF06120 Phage_HK97_TLTM: Tail 34.0 9E+02 0.02 29.0 18.1 37 378-414 132-168 (301)
287 PLN02939 transferase, transfer 33.4 1.5E+03 0.033 31.5 29.3 64 725-791 326-395 (977)
288 COG1382 GimC Prefoldin, chaper 33.4 5.8E+02 0.013 26.6 13.2 42 382-423 8-49 (119)
289 PF04102 SlyX: SlyX; InterPro 33.0 1.9E+02 0.0041 26.9 7.3 50 540-589 3-52 (69)
290 PF10267 Tmemb_cc2: Predicted 32.9 7.5E+02 0.016 30.8 14.3 24 502-525 247-270 (395)
291 PF14992 TMCO5: TMCO5 family 32.7 9.1E+02 0.02 28.7 15.4 166 976-1185 15-180 (280)
292 KOG0239 Kinesin (KAR3 subfamil 32.6 1.2E+03 0.027 31.0 17.1 77 1089-1166 242-318 (670)
293 PRK00409 recombination and DNA 32.3 1.4E+03 0.031 30.9 18.1 103 294-398 493-595 (782)
294 PF15035 Rootletin: Ciliary ro 32.1 7.4E+02 0.016 27.5 16.9 110 336-445 7-132 (182)
295 PF01920 Prefoldin_2: Prefoldi 31.5 2.2E+02 0.0047 27.8 8.0 45 1253-1297 58-102 (106)
296 PF04899 MbeD_MobD: MbeD/MobD 31.5 4.1E+02 0.0089 25.2 9.2 34 511-544 19-52 (70)
297 PF03962 Mnd1: Mnd1 family; I 31.4 4.1E+02 0.0088 29.6 10.8 96 1012-1115 67-162 (188)
298 PF02403 Seryl_tRNA_N: Seryl-t 31.2 5.3E+02 0.012 25.5 10.9 47 752-799 10-56 (108)
299 PRK04406 hypothetical protein; 31.0 3.1E+02 0.0068 26.1 8.5 44 539-582 9-52 (75)
300 PF12777 MT: Microtubule-bindi 30.6 1E+03 0.023 28.7 24.0 35 334-368 11-45 (344)
301 PF02994 Transposase_22: L1 tr 30.3 1.3E+02 0.0028 36.9 7.4 52 384-435 141-192 (370)
302 COG1382 GimC Prefoldin, chaper 30.1 5.8E+02 0.013 26.6 10.7 30 1092-1121 74-103 (119)
303 PF10267 Tmemb_cc2: Predicted 29.6 1.2E+03 0.025 29.2 15.1 21 573-593 248-268 (395)
304 COG0497 RecN ATPase involved i 29.4 1.4E+03 0.03 29.8 22.4 121 1155-1294 245-365 (557)
305 PRK09841 cryptic autophosphory 29.4 1.3E+03 0.027 31.0 16.8 34 968-1001 263-296 (726)
306 PF08172 CASP_C: CASP C termin 29.3 6.8E+02 0.015 29.1 12.6 59 534-592 79-137 (248)
307 PRK10869 recombination and rep 29.2 1.4E+03 0.03 29.7 25.4 121 1156-1295 245-365 (553)
308 PF13908 Shisa: Wnt and FGF in 29.1 37 0.00081 36.9 2.4 22 1353-1374 79-100 (179)
309 PRK00295 hypothetical protein; 29.1 2.9E+02 0.0063 25.8 7.8 31 521-551 6-36 (68)
310 PF05377 FlaC_arch: Flagella a 28.9 1.7E+02 0.0038 26.4 5.9 40 98-137 1-40 (55)
311 KOG1962 B-cell receptor-associ 28.9 3E+02 0.0066 31.3 9.3 40 115-154 148-187 (216)
312 PRK10698 phage shock protein P 28.8 9.1E+02 0.02 27.5 23.3 47 1140-1190 88-138 (222)
313 KOG3653 Transforming growth fa 28.4 41 0.00088 42.0 2.7 42 1335-1376 137-179 (534)
314 PF15372 DUF4600: Domain of un 28.2 3.7E+02 0.0079 28.4 9.0 77 837-915 20-106 (129)
315 PRK02119 hypothetical protein; 28.1 3.3E+02 0.0071 25.8 8.0 39 518-556 7-45 (73)
316 PRK01844 hypothetical protein; 28.0 46 0.00099 31.4 2.3 14 1364-1377 15-28 (72)
317 PLN03229 acetyl-coenzyme A car 27.8 1.6E+03 0.036 30.1 17.1 25 1220-1244 560-590 (762)
318 cd00632 Prefoldin_beta Prefold 27.6 6.2E+02 0.013 25.2 12.3 28 716-743 70-97 (105)
319 PRK10132 hypothetical protein; 27.4 50 0.0011 33.5 2.7 16 1361-1376 92-107 (108)
320 PF04949 Transcrip_act: Transc 27.4 8.2E+02 0.018 26.5 14.8 90 715-804 55-144 (159)
321 PF10805 DUF2730: Protein of u 27.3 4.6E+02 0.0099 26.5 9.5 50 544-593 45-96 (106)
322 PF10046 BLOC1_2: Biogenesis o 27.1 6.3E+02 0.014 25.1 12.4 81 509-593 17-97 (99)
323 PF14073 Cep57_CLD: Centrosome 27.1 9.1E+02 0.02 26.9 21.0 41 502-542 60-100 (178)
324 PF06120 Phage_HK97_TLTM: Tail 26.5 1.2E+03 0.026 28.1 15.3 19 476-494 46-64 (301)
325 PRK09973 putative outer membra 26.3 2.4E+02 0.0052 27.7 6.8 43 1082-1124 25-67 (85)
326 PRK04325 hypothetical protein; 26.2 3.4E+02 0.0073 25.8 7.8 29 522-550 11-39 (74)
327 PF15456 Uds1: Up-regulated Du 25.9 7.8E+02 0.017 25.7 12.2 97 846-943 22-122 (124)
328 PRK00736 hypothetical protein; 25.9 3.4E+02 0.0073 25.4 7.6 30 522-551 7-36 (68)
329 TIGR03752 conj_TIGR03752 integ 25.9 5.1E+02 0.011 32.8 11.3 82 831-919 58-140 (472)
330 PF05335 DUF745: Protein of un 25.8 9.7E+02 0.021 26.8 15.0 90 531-620 71-160 (188)
331 KOG2991 Splicing regulator [RN 25.7 1.1E+03 0.024 27.6 22.9 143 437-592 137-301 (330)
332 PF10234 Cluap1: Clusterin-ass 25.7 1.2E+03 0.025 27.7 15.0 89 326-414 171-259 (267)
333 PF15102 TMEM154: TMEM154 prot 25.7 38 0.00082 36.1 1.6 19 1358-1376 66-84 (146)
334 KOG4807 F-actin binding protei 25.6 1.3E+03 0.029 28.4 23.6 89 1089-1183 350-439 (593)
335 PRK02119 hypothetical protein; 25.5 4.1E+02 0.0088 25.2 8.2 41 541-581 9-49 (73)
336 PRK02793 phi X174 lysis protei 25.3 3.7E+02 0.008 25.4 7.8 32 519-550 7-38 (72)
337 KOG0992 Uncharacterized conser 25.3 1.5E+03 0.033 29.0 38.8 34 1256-1289 480-513 (613)
338 PF15294 Leu_zip: Leucine zipp 25.1 1.2E+03 0.026 27.7 16.2 17 1089-1105 261-277 (278)
339 cd07588 BAR_Amphiphysin The Bi 25.1 1E+03 0.023 27.0 12.8 48 244-291 12-59 (211)
340 PRK10404 hypothetical protein; 25.0 61 0.0013 32.5 2.8 16 1361-1376 86-101 (101)
341 PF13870 DUF4201: Domain of un 24.8 9.2E+02 0.02 26.2 22.0 12 651-662 157-168 (177)
342 PF04728 LPP: Lipoprotein leuc 24.7 4.8E+02 0.01 23.8 7.9 43 559-601 7-49 (56)
343 PF08647 BRE1: BRE1 E3 ubiquit 24.6 6.9E+02 0.015 24.7 12.1 59 532-590 22-80 (96)
344 KOG0971 Microtubule-associated 24.5 2E+03 0.043 30.0 79.0 99 1167-1293 957-1055(1243)
345 PRK04325 hypothetical protein; 24.3 4.2E+02 0.0091 25.1 8.0 44 542-585 10-53 (74)
346 KOG0979 Structural maintenance 24.2 2.1E+03 0.045 30.2 59.8 107 634-740 250-356 (1072)
347 KOG0288 WD40 repeat protein Ti 24.1 1.4E+03 0.03 28.7 14.0 96 339-434 7-102 (459)
348 PRK00295 hypothetical protein; 23.8 4.8E+02 0.01 24.4 8.2 41 545-585 9-49 (68)
349 KOG2991 Splicing regulator [RN 23.5 1.2E+03 0.027 27.2 24.4 66 468-533 90-163 (330)
350 PF05957 DUF883: Bacterial pro 23.4 69 0.0015 31.2 2.8 21 1356-1376 74-94 (94)
351 TIGR02231 conserved hypothetic 23.3 5.1E+02 0.011 33.0 11.3 48 388-435 125-172 (525)
352 PF10046 BLOC1_2: Biogenesis o 23.2 7.5E+02 0.016 24.6 11.5 37 1194-1244 28-64 (99)
353 KOG4603 TBP-1 interacting prot 23.0 5.6E+02 0.012 28.3 9.4 64 527-590 79-144 (201)
354 KOG1962 B-cell receptor-associ 22.6 5E+02 0.011 29.7 9.5 54 893-946 149-202 (216)
355 PRK00846 hypothetical protein; 22.3 4.4E+02 0.0095 25.5 7.7 39 518-556 11-49 (77)
356 TIGR02894 DNA_bind_RsfA transc 22.2 6.5E+02 0.014 27.6 9.8 122 784-923 16-146 (161)
357 PF04650 YSIRK_signal: YSIRK t 22.2 38 0.00082 26.2 0.6 11 1362-1372 14-24 (27)
358 KOG4360 Uncharacterized coiled 22.2 1.8E+03 0.038 28.5 25.7 90 655-744 214-303 (596)
359 TIGR03752 conj_TIGR03752 integ 22.2 4.2E+02 0.0091 33.5 9.6 79 1022-1110 60-138 (472)
360 PRK02793 phi X174 lysis protei 22.2 4.8E+02 0.01 24.7 7.9 8 543-550 10-17 (72)
361 PF11180 DUF2968: Protein of u 22.2 9.8E+02 0.021 26.9 11.4 76 504-579 110-185 (192)
362 PRK00736 hypothetical protein; 21.9 5E+02 0.011 24.3 7.9 43 543-585 7-49 (68)
363 PF13863 DUF4200: Domain of un 21.8 8.4E+02 0.018 24.7 14.5 94 503-596 15-108 (126)
364 PF05384 DegS: Sensor protein 21.7 1.1E+03 0.023 25.8 20.5 49 510-558 24-72 (159)
365 PF06810 Phage_GP20: Phage min 21.7 6.8E+02 0.015 27.0 10.1 28 514-541 21-48 (155)
366 PF07271 Cytadhesin_P30: Cytad 21.7 51 0.0011 38.2 1.7 28 1347-1374 64-91 (279)
367 TIGR01010 BexC_CtrB_KpsE polys 21.2 1.5E+03 0.032 27.3 17.6 25 976-1000 174-198 (362)
368 PF10458 Val_tRNA-synt_C: Valy 21.2 3.9E+02 0.0085 24.5 7.1 56 1221-1276 7-65 (66)
369 PRK00846 hypothetical protein; 21.1 5.7E+02 0.012 24.7 8.2 47 541-587 13-59 (77)
370 PF02841 GBP_C: Guanylate-bind 21.0 9.9E+02 0.022 28.2 12.3 106 107-212 186-297 (297)
371 PRK13734 conjugal transfer pil 20.9 55 0.0012 33.1 1.6 17 1355-1371 97-113 (120)
372 KOG4460 Nuclear pore complex, 20.8 1.9E+03 0.042 28.4 15.8 62 630-691 667-733 (741)
373 PHA01750 hypothetical protein 20.7 3E+02 0.0064 25.7 5.9 34 1255-1288 40-73 (75)
374 PRK01844 hypothetical protein; 20.6 49 0.0011 31.2 1.1 21 1354-1374 1-21 (72)
375 PF11688 DUF3285: Protein of u 20.1 95 0.0021 26.6 2.5 18 1358-1375 27-45 (45)
376 PF14712 Snapin_Pallidin: Snap 20.0 7.9E+02 0.017 23.6 11.1 74 521-595 15-90 (92)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-72 Score=732.84 Aligned_cols=927 Identities=26% Similarity=0.347 Sum_probs=843.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000644 115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-------AKRKELAEVK 187 (1377)
Q Consensus 115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~-------~~~~~L~~~k 187 (1377)
+.+++|.++++++..+++++.+.+...++|+..+.++.. +++.|+.+|+++. +++.++...+
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k 903 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK 903 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999 9999999999998 5566666655
Q ss_pred H--------------HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhH
Q 000644 188 E--------------AFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA 253 (1377)
Q Consensus 188 e--------------~~e~~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~ 253 (1377)
. ..++.+..++..++++++.|++|+..+++ .+++ ++| +++|+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~-------- 960 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN-------- 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence 2 22888999999999999999999999999 8888 999 999999
Q ss_pred HhHHHHHHhHHHHHhhhhhhhhhhhh----HHHHHHhhhhhhhHHHHH-hCCCH------HHHHHHHHhhhhHHHhhhhh
Q 000644 254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL 322 (1377)
Q Consensus 254 KtlE~ql~~l~ee~~~~~~~~~~~~k----~ee~ls~~~~eL~~~~e~-lglsK------aiL~~vekkf~~~k~l~k~~ 322 (1377)
++++++..++++|.+++|.++++++ +++++..+.++|+..+++ .+++| ++|++++..|.+.+. .
T Consensus 961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen 961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 9999999999999999999999988 789999999999998888 99988 899999999999999 7
Q ss_pred HHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1377)
Q Consensus 323 ~~el~~~K~----~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~ 398 (1377)
+.++++.++ .+..+++.+..+.....+|..++.+++.++..++.+++++...+..+...+.++.+++.++.++|+.
T Consensus 1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhcc
Q 000644 399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478 (1377)
Q Consensus 399 l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~q 478 (1377)
.+..+.++++.+.||...+..+...+++............+|++. |+..+++++++.+..|++.++++|+
T Consensus 1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999966655555544444444444447789999 9999999999999999999999999
Q ss_pred ch----HHHHHHHHH---hHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000644 479 RN----LELEDIIRA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540 (1377)
Q Consensus 479 k~----~EL~~qi~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLe 540 (1377)
+| .+|.+|+++ .|+.+++.|+.+ ..+...+.+.++.++.++.++.+++.+++++.+.+.++.
T Consensus 1186 ~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~ 1265 (1930)
T KOG0161|consen 1186 KHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLT 1265 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 899999999 899999999988 667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHhhh-HHHH
Q 000644 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDR 605 (1377)
Q Consensus 541 ekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r 605 (1377)
.+..++..++..+.+.+++....+..+......+++++. .+...++.+..+++.+++++++ .+++
T Consensus 1266 ~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~ 1345 (1930)
T KOG0161|consen 1266 AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAK 1345 (1930)
T ss_pred HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888 7788899999999999999999 7888
Q ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH-------
Q 000644 606 ANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE------- 652 (1377)
Q Consensus 606 a~~~rqrs~eLeell~~~kskLEe~~~~-leelEe~------------------------LE~~K~Rlq-ELE------- 652 (1377)
.+..++.+....+ +..|+.++++.... ++++++. ++..+.+++ +++
T Consensus 1346 ~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1346 NELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888777777 77888888765543 4555543 455555533 222
Q ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q 000644 653 ---EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELT 708 (1377)
Q Consensus 653 ---eqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek---------------------~reL~ 708 (1377)
..+..++++++.|++.+++|.....++..+++....+.+..++.+...... +.++.
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999998887777776633333222 22445
Q ss_pred HHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 000644 709 ESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKS 776 (1377)
Q Consensus 709 eql~el-------ek~k~~LE~EieElkeqLeElE~~Le-----~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~ 776 (1377)
.+++++ +..++.++.++.+++.+|.|++..++ .+|.++++.+.+.+ ++++|+.+ ++++++++++
T Consensus 1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEELRKN 1580 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHHHHH
Confidence 555444 67789999999999999999999876 88999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000644 777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA- 852 (1377)
Q Consensus 777 ~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~- 852 (1377)
|+++|++++++|+++++.++++. +.+||||+||++ +++++|+..++++ |+|++++.||++||.++++++
T Consensus 1581 ~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~~~~ 1653 (1930)
T KOG0161|consen 1581 LQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELEDAQR 1653 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999 9999999999999 999999999999999999877
Q ss_pred -------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHH
Q 000644 853 -------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLD 919 (1377)
Q Consensus 853 -------------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~ 919 (1377)
+|+..+.+|++++...+.+++|++++++.+++|+.+.++.++++|+.++..|++|+++|..|+++|+
T Consensus 1654 ~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1654 AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 000644 920 SAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE 999 (1377)
Q Consensus 920 ~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~ 999 (1377)
+++++++.+.+|.+++..+++++++++ +.++.++++.+++++ .|+++||||+.||+++|+.+..
T Consensus 1734 e~~~~~~~~~Er~kka~~~a~~~~~el------------~~Eq~~~~~le~~k~--~LE~~~kdLq~rL~e~E~~a~~-- 1797 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEEL------------RKEQETSQKLERLKK--SLERQVKDLQLRLDEAEQAALK-- 1797 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhh--
Confidence 999999999999999999999999999 999999999999999 9999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccc
Q 000644 1000 EQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEK 1079 (1377)
Q Consensus 1000 ~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~ 1079 (1377)
+|++ .+..++++|..|+.. ++.|-+++..++ +.++.+++.|++++.| ++.
T Consensus 1798 ----------~~k~--------~i~~Learir~LE~~---l~~E~~~~~e~~----k~~rk~er~vkEl~~q-----~ee 1847 (1930)
T KOG0161|consen 1798 ----------GGKK--------QIAKLEARIRELESE---LEGEQRRKAEAI----KGLRKKERRVKELQFQ-----VEE 1847 (1930)
T ss_pred ----------ccHH--------HHHHHHHHHHHHHHH---HhHhhhhhHHHh----HHHHHHHHHHHHHHHH-----hhh
Confidence 9999 999999999999999 999999999999 9999999999999999 345
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000644 1080 DETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIES 1159 (1377)
Q Consensus 1080 ~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~ 1159 (1377)
++ + +...+++.+.+++.++..|++|+++++...++.+.+|++.+++++++. +..|+|+++|..
T Consensus 1848 d~--k----~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~-----------erad~~e~~~~~ 1910 (1930)
T KOG0161|consen 1848 DK--K----NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAE-----------ERADTAESELNK 1910 (1930)
T ss_pred hh--h----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 55 4 788999999999999999999999999999999999999999999999 889999999999
Q ss_pred HHHHHH
Q 000644 1160 LKAQAA 1165 (1377)
Q Consensus 1160 lk~~~~ 1165 (1377)
+|....
T Consensus 1911 lr~k~r 1916 (1930)
T KOG0161|consen 1911 LRSKLR 1916 (1930)
T ss_pred HHHHHH
Confidence 998764
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=2.3e-63 Score=633.85 Aligned_cols=734 Identities=26% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHh
Q 000644 343 LDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKE 422 (1377)
Q Consensus 343 le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e 422 (1377)
+.+...+|...|.+++++|..+..++++++..+..+.+.|.++.++|.+|..+|+..+..+.++++.+.||. .+|.+
T Consensus 2 ~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~---~ELe~ 78 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLS---EELEE 78 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999999999999999 66777
Q ss_pred hhHHHHHHHhhhHh---hhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccch----HHHHHHHHH---hHH
Q 000644 423 LCSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDIIRA---SNE 492 (1377)
Q Consensus 423 ~~eeLEeeL~~~~~---e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~----~EL~~qi~~---~~~ 492 (1377)
....|++..+.+.+ ..+|||+ ||..++|.|++.+..|+++++.+|+|| .+|.+||++ .++
T Consensus 79 l~~~Lee~~~~t~aq~E~~kkrE~----------El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~ 148 (859)
T PF01576_consen 79 LKERLEEAGGATQAQIELNKKREA----------ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKA 148 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhCcHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888776 6799999 999999999999999999999999999 999999999 899
Q ss_pred HHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 493 AAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1377)
Q Consensus 493 ~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele 561 (1377)
++|+.|+.| +.+...+..+++.++.++.++.+++.++.+..+.+.++.....++..++..+...+....
T Consensus 149 ~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e 228 (859)
T PF01576_consen 149 KLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAE 228 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHhhh-HHHHhhhhhhhhHHHHHhHHhhhhh
Q 000644 562 DQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDRANMSHQRSIELEDLFQTSHSK 626 (1377)
Q Consensus 562 ~kleelq~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~ra~~~rqrs~eLeell~~~ksk 626 (1377)
..+..+......|..++. .+...++.++.+++.+++++++ .+++....++......+ +..|+.+
T Consensus 229 ~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E-l~~~k~K 307 (859)
T PF01576_consen 229 SQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE-LEQWKKK 307 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH-HHHHHHH
Confidence 999999999988888887 7788999999999999999998 67777777776665555 8889988
Q ss_pred hhhhh-hhHHHHHHH------------------------HHHHHHHHH-HH----------HHHHHHHHHHHHHHHHhhH
Q 000644 627 LEGTG-KRVNELELL------------------------LEAEKYRIQ-EL----------EEQISKLEKKCEEAEAGSK 670 (1377)
Q Consensus 627 LEe~~-~~leelEe~------------------------LE~~K~Rlq-EL----------Eeqis~LEKK~k~~eqel~ 670 (1377)
|+... ..++.+++. +++.+.++. ++ ...+..+++++..|++.+.
T Consensus 308 ~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 308 YEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88655 335566552 444444443 22 2667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH-------HHHHHHHHH
Q 000644 671 QYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELTESLNA-------AADEKRKLQ 722 (1377)
Q Consensus 671 el~~~l~kLk~ELE~~eke~relEt~L~e~~ek---------------------~reL~eql~e-------lek~k~~LE 722 (1377)
.|...+..+..+++.+..+++.+.+.+..+... +.+|+.++++ +.+.++.|+
T Consensus 388 e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 388 EWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence 999999999999999998888888844433333 2255555554 378899999
Q ss_pred HHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000644 723 DTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSE 797 (1377)
Q Consensus 723 ~EieElkeqLeElE~~Le-----~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e 797 (1377)
.++.+++.+|.++++.+. .+|+++++.+.+.+ |+++|+.+ +++|++.|++++++|++|+++|+.+++.|+.
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~l~eK---eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~ 543 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERELQEK---EEEFEETRRNHQRQLESLEAELEEERKERAE 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---hhHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999987 89999999999999 99999999 9999999999999999999999999999999
Q ss_pred hhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 000644 798 LESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA--------------GKYALLKE 860 (1377)
Q Consensus 798 ~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~--------------~k~~~l~~ 860 (1377)
++ +.+||||++|++ +++++|+...++. +.+++++.||++||..+++++ +++..|.+
T Consensus 544 ~~----r~kkKLE~~l~eLe~~ld~~n~~~~e~~---k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ 616 (859)
T PF01576_consen 544 AL----REKKKLESDLNELEIQLDHANRANEEAQ---KQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQA 616 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999 9999999999999 999999999999999999977 77889999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHH
Q 000644 861 ELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVT 940 (1377)
Q Consensus 861 Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~ 940 (1377)
|++++...+.+++++++.++++++++.++++.+++.|+.|...+++|+++|.+|+.+|++++++++.+.+|+++++.+++
T Consensus 617 elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~ 696 (859)
T PF01576_consen 617 ELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAA 696 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 000644 941 ELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETL 1020 (1377)
Q Consensus 941 ~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 1020 (1377)
+|+++| +.++.++++.+.+++ .|+.+||+|+.||+++|+.+.. +|++
T Consensus 697 ~l~~eL------------~~Eq~~~~~le~~k~--~LE~q~keLq~rl~e~E~~~~~------------~~k~------- 743 (859)
T PF01576_consen 697 QLAEEL------------RQEQDHNQHLEKEKK--ALERQVKELQARLEEAEQSALK------------GGKK------- 743 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc------------cccc-------
Confidence 999999 999999999999999 9999999999999999999988 9999
Q ss_pred HHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q 000644 1021 LKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL 1100 (1377)
Q Consensus 1021 ~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkL 1100 (1377)
.|..++++|.+|+.. ++.|.+.+..+. +.++.++++|+++.++ ++.++ . +..++.|+++++
T Consensus 744 -~i~kLE~ri~eLE~~---Le~E~r~~~~~~----k~~rk~er~~kEl~~q-----~ee~~--k----~~~~~~d~~~kl 804 (859)
T PF01576_consen 744 -QIAKLEARIRELEEE---LESEQRRRAEAQ----KQLRKLERRVKELQFQ-----VEEER--K----NAERLQDLVDKL 804 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHhHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHhhHHHHHHH-----HHhHH--H----HHHHHHHHHHHH
Confidence 999999999999999 999999999999 9999999999999999 33443 3 677999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000644 1101 TSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQA 1164 (1377)
Q Consensus 1101 r~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~ 1164 (1377)
+.+|+.|++|++++++++++.+++|+..+++++++. +..+++.+++..+|+..
T Consensus 805 ~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~-----------e~~~~~e~~l~~lr~~~ 857 (859)
T PF01576_consen 805 QLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAE-----------ERAEAAERELNKLRAKS 857 (859)
T ss_dssp --------------------------SSSSHHHHHT-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998 89999999999999764
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-26 Score=310.65 Aligned_cols=840 Identities=16% Similarity=0.194 Sum_probs=477.1
Q ss_pred hHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhH-HHHHhCCCHHHHHHH------------------HHhh
Q 000644 252 SAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISA-IQEELGLSKLQLLDL------------------EQRF 312 (1377)
Q Consensus 252 ~~KtlE~ql~~l~ee~~~~~~~~~~~~k~ee~ls~~~~eL~~-~~e~lglsKaiL~~v------------------ekkf 312 (1377)
+|+++++.+..+ .+|...++++++++++. +|..+||+++++.+| ++.|
T Consensus 109 ~~~~~~~~~~~~-------------~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~Qge~~~~~~~~~~rk~~~ 175 (1311)
T TIGR00606 109 EFKTLEGVITRY-------------KHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKF 175 (1311)
T ss_pred cchhhhhhheec-------------CCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeCCcccccccCChHHHHHHH
Confidence 456777665554 34666788999999998 999999999999987 4555
Q ss_pred -------------hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000644 313 -------------SSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEVNARE 376 (1377)
Q Consensus 313 -------------~~~k~l~k~~~~el~~~K~~~~~lke~~~~le---~~l~eL~~~l~~k~~El~~l~~kleee~~~~~ 376 (1377)
++++.+++++..+++.++.++.+++.+++++. ..+..+...+..+..++..+..++ ....
T Consensus 176 d~if~~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei----~~l~ 251 (1311)
T TIGR00606 176 DEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENEL----DPLK 251 (1311)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 89999999999999999999999999999886 888889999999999999998888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHH
Q 000644 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNI-ARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAEL 455 (1377)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i-~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El 455 (1377)
.....++.....|..+...+..++..+......+.+|...+ ..++.++++|...+......+...+. ++
T Consensus 252 ~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~----------~~ 321 (1311)
T TIGR00606 252 NRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKER----------EL 321 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHH----------HH
Confidence 88999999999999999999999999999999999999766 45677767666655554433322211 00
Q ss_pred HHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000644 456 ELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSERE 535 (1377)
Q Consensus 456 ~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~ere 535 (1377)
. .....+..+...+..+...+..+...+..++.+.....+.
T Consensus 322 ~---------------------------------------~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~ 362 (1311)
T TIGR00606 322 V---------------------------------------DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362 (1311)
T ss_pred H---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111111111122222222222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHH--HHH-H--HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHhhhHHHHh
Q 000644 536 VREFSEKLSQLSTALKEV--EEE-K--KQLHDQMNDYKDKITQLELI----LNQSNTRSSELEEELRITKERSAEDEDRA 606 (1377)
Q Consensus 536 i~eLeekiskLq~EL~el--E~e-L--eele~kleelq~kIs~LEsq----Lk~LqsrireLEEele~L~EeLeE~e~ra 606 (1377)
+..+..-+..+...+.-- ... + ..+..-++.+...+...... ...+...+..++..++.+...+...+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~ 442 (1311)
T TIGR00606 363 IRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI 442 (1311)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333322100 000 0 00000111111111111111 11222222222222222222222211111
Q ss_pred hhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHH
Q 000644 607 NMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYS--DKVCELASELE 684 (1377)
Q Consensus 607 ~~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~--~~l~kLk~ELE 684 (1377)
......+..... ++......+..+. ..+..+..++.++..+...+..+. .....+...|.
T Consensus 443 ~~~~e~~~~~~~-------~i~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 504 (1311)
T TIGR00606 443 ELKKEILEKKQE-------ELKFVIKELQQLE-----------GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504 (1311)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHhhcc-----------cChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 111110000000 0000000000000 000111111111111111111111 01111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000644 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLES----IEKDL 760 (1377)
Q Consensus 685 ~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~es----lE~~l 760 (1377)
..+..+..++..+..++..+..+...- .....+.-++.++.--...+.. +-..+
T Consensus 505 ~~~~~~~~le~~~~~l~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 562 (1311)
T TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHT----------------------TTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL 562 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222111111110 0111111111111100000000 00000
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHH
Q 000644 761 KAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQ 840 (1377)
Q Consensus 761 ~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~q 840 (1377)
... +. .+..+ ..++..+..+...+.........+. .-...+|..++.....+++...+...+.+++.. ...
T Consensus 563 ~~~-~~--~~~~~-~~l~~~~~~~~~el~~~~~~~~~~~----~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~ 633 (1311)
T TIGR00606 563 TSL-LG--YFPNK-KQLEDWLHSKSKEINQTRDRLAKLN----KELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCG 633 (1311)
T ss_pred HHh-cC--CCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 000 00 01111 3344445555555555555544444 334445555554444444443333333333320 002
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhcc---c----cchhhhHHHHHHHhHHHHHH
Q 000644 841 VKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANN---S----SSENELLVETNNQLKSKVAE 913 (1377)
Q Consensus 841 ik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~---~----~~~~~~L~~~~~~le~~i~~ 913 (1377)
+.+|.. .+..++.++......+..+.....-...=+..++++..+ + +..-.....-...|+..+..
T Consensus 634 ~~~~~~-------~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~ 706 (1311)
T TIGR00606 634 SQDEES-------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRL 706 (1311)
T ss_pred chhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhc
Confidence 222222 333444444444444444444444444433333221000 0 00000012222233333332
Q ss_pred H---HHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHH
Q 000644 914 L---QELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSV 990 (1377)
Q Consensus 914 L---qe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~ 990 (1377)
+ ...+.......+...+.+......+ +.++. .+..+..+|+..+.+
T Consensus 707 ~p~~~~~~~~~~~~~~~~~e~l~~l~~~~-----------------------------~~~~~--l~~~eip~l~~~l~~ 755 (1311)
T TIGR00606 707 APDKLKSTESELKKKEKRRDEMLGLAPGR-----------------------------QSIID--LKEKEIPELRNKLQK 755 (1311)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhH-----------------------------HHHHH--HHHhhchhHHHHHHH
Confidence 2 2222222222222222222211111 12222 223445666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHH
Q 000644 991 LEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQA 1070 (1377)
Q Consensus 991 ~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~ 1070 (1377)
++..+.. ....++.++..+..+...++.+++ +.+++..|.++..++.+++++|.+|..
T Consensus 756 le~~l~~---------------------~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 756 VNRDIQR---------------------LKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAA 813 (1311)
T ss_pred HHHHHHH---------------------HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 223678899999999999999999 999999999999999999999999999
Q ss_pred HhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 000644 1071 KLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATE 1150 (1377)
Q Consensus 1071 qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~ 1150 (1377)
++. ..+.++|+++|+..+..++..++.++..+..++.+++....+++.| ...+.++...-..+..++..+..+.
T Consensus 814 ~l~--~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L----q~ki~el~~~klkl~~~l~~r~~le 887 (1311)
T TIGR00606 814 KLQ--GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL----KSKTNELKSEKLQIGTNLQRRQQFE 887 (1311)
T ss_pred Hhc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 4556789999999999999999999999999999999999999999 5555555555566666888887777
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHH
Q 000644 1151 ETFKSEIESLKAQAAE----KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQ 1226 (1377)
Q Consensus 1151 ~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~ 1226 (1377)
.+|..+...+.+ +..++..|..|.+.+..+...+.+ ++..+...+..++..+ +.+...
T Consensus 888 ----~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~ 949 (1311)
T TIGR00606 888 ----EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE----LISSKETSNKKAQDKV----------NDIKEK 949 (1311)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------HHHHHH
Confidence 888888888877 899999999999999999999999 9999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1227 VIQLQRELQIAQTAIAEQ--RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1227 v~~~~~el~~l~~~I~~y--~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~ 1295 (1377)
+ ++|..++..|.+| .|+|.++ ..|..++..+...|..+..++..++.+|+.+.+++.++++...
T Consensus 950 ~----~~~~~~~~~i~~y~~~~~~~qL-~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 950 V----KNIHGYMKDIENKIQDGKDDYL-KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred H----HHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999 8889999 9999999999999999999999999999999999998887655
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.97 E-value=2.4e-18 Score=228.58 Aligned_cols=1005 Identities=20% Similarity=0.273 Sum_probs=512.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhh
Q 000644 139 KKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-AKRKELAEVKEAF---DGLSLEIEQSRSRLQELEHKLQCS 214 (1377)
Q Consensus 139 ~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~-~~~~~L~~~ke~~---e~~~~~l~~~kkk~q~~~~~L~~~ 214 (1377)
..+...+....+|-..+..+|.+.+ ++...-..+..+. ....+|..-++.+ +++...+...+-.++....++..+
T Consensus 838 e~~~~~~~e~~~l~~~l~~~e~~~~-ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~ 916 (1930)
T KOG0161|consen 838 EEMRAKEEEIQKLKEELQKSESKRK-ELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKER 916 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445454444444443 3333333333333 3333344444333 555555555555556666666655
Q ss_pred HHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhh----HHHHHHhhhhh
Q 000644 215 VDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTE 290 (1377)
Q Consensus 215 ~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~KtlE~ql~~l~ee~~~~~~~~~~~~k----~ee~ls~~~~e 290 (1377)
+++ .+... +..+.++ -..+.-+..-+.....+|+.+..++-|.....-++.++.+ +++.++...-+
T Consensus 917 ~e~------~ee~~---~~le~~~-~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 917 LEE------EEEKN---AELERKK-RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHH------HHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 22211 1122222 2222333333334457777777777777777777777655 45555555555
Q ss_pred hhHHHHHhCCCHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 291 ISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQE 370 (1377)
Q Consensus 291 L~~~~e~lglsKaiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~klee 370 (1377)
=..+++.++=..+.|...+++..++.+++..+.+++..+...+..-+....++++....+.+.+ ..+...+.+
T Consensus 987 kk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-------~~~~e~~~~ 1059 (1930)
T KOG0161|consen 987 KKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-------KDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHH
Confidence 4444544444445566667788888887777777777777766665555555555555555544 444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhh
Q 000644 371 EVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALA 450 (1377)
Q Consensus 371 e~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~ 450 (1377)
....+..+...+.....++..+...++........+.+.|.+|.+.|.++.+.++.-.....+....++.-..
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~------- 1132 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE------- 1132 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 5556666777777777778888888888888888888888888877777777777777766666666666655
Q ss_pred chHHHHHHHhhHHHHhhhhHHHHHHhccch--------------HHHHHHHHHhHHHHHH----HHHHHhhhhhhHHHHH
Q 000644 451 NNAELELKLKSLEEQHNETGAAAATASQRN--------------LELEDIIRASNEAAEE----AKSQLRELEPRFIAAE 512 (1377)
Q Consensus 451 ~~~El~~~~k~lee~~~~he~~~~~~~qk~--------------~EL~~qi~~~~~~~Ek----~k~~l~~l~~~~~~~E 512 (1377)
+|+.+...|++.....-+++....++- ...+.++..++....+ .-.++..+...+..++
T Consensus 1133 ---ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~le 1209 (1930)
T KOG0161|consen 1133 ---ELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLE 1209 (1930)
T ss_pred ---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887555555444433333 2222333332222211 1222233333333333
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 513 QRSVELEQQLNLVELKSSDSE-------REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1377)
Q Consensus 513 kk~keLE~Ql~elq~K~~e~e-------rei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsri 585 (1377)
+....++..+..+...+.... +-...++..+..++..+......+..+..+.......+..+.+.+......+
T Consensus 1210 kek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~ 1289 (1930)
T KOG0161|consen 1210 KEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKL 1289 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHH
Confidence 333333333333333333222 2222222333333333333333322222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 586 SELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEA 665 (1377)
Q Consensus 586 reLEEele~L~EeLeE~e~ra~~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~ 665 (1377)
..+......+..++++..............+. .++..++......+.++.+-.+....+.+++...
T Consensus 1290 ~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~--------------~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~ 1355 (1930)
T KOG0161|consen 1290 SALSRDKQALESQLEELKRQLEEETREKSALE--------------NALRQLEHELDLLREQLEEEQEAKNELERKLSKA 1355 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222221111111111000010 1111111112222222222223333333333333
Q ss_pred HHhhHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 666 EAGSKQYS----------------------DKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQD 723 (1377)
Q Consensus 666 eqel~el~----------------------~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~ 723 (1377)
......|. ..+..+...++.++..+..++.....++..+.++...++........|+.
T Consensus 1356 ~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~ 1435 (1930)
T KOG0161|consen 1356 NAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK 1435 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 33333333344444444444444444444444444444433333333333
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 000644 724 TSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHE 803 (1377)
Q Consensus 724 EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e 803 (1377)
....+...|.+.....+.+-.+++-.+.-.. . ..+.+..+..+++.+...++.. .
T Consensus 1436 k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r-------~-------~~tel~kl~~~lee~~e~~e~l-------~---- 1490 (1930)
T KOG0161|consen 1436 KQKRFEKLLAEWKKKLEKLQAELDAAQRELR-------Q-------LSTELQKLKNALEELLEQLEEL-------R---- 1490 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------hHHHHHHHHHHHHHHHHHHHHH-------H----
Confidence 3333333333333333333332222111111 1 1233333344444433333333 3
Q ss_pred HhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HHHHHHHHHH-
Q 000644 804 SLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAG--------KY------ALLKEELDSY- 865 (1377)
Q Consensus 804 ~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~--------k~------~~l~~Ele~~- 865 (1377)
+..+.+...+.+ ++.-+++.-.|.. +-+|.++.++-++|..++|+.. ++ ..+..|+++.
T Consensus 1491 renk~l~~ei~dl~~~~~e~~k~v~ele---k~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l 1567 (1930)
T KOG0161|consen 1491 RENKNLSQEIEDLEEQKDEGGKRVHELE---KEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRL 1567 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555566655555 5555666655555 9999999999999988888762 22 2333333322
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHH
Q 000644 866 FIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQ 945 (1377)
Q Consensus 866 ~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~ 945 (1377)
..+-.-.|..++.+...+..+...+..=....+..+..+++|+++|++|+-.|+.+-.....+-..+++...++.+|.-+
T Consensus 1568 ~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~ 1647 (1930)
T KOG0161|consen 1568 QEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRE 1647 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 22444566777777777777766666666677778888889999999999999999999999999999999999988887
Q ss_pred HHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 000644 946 HSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKN 1025 (1377)
Q Consensus 946 l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~ 1025 (1377)
+.. +-...+.+.+|...+-+++..+..+.-+|...++.++.+-+-
T Consensus 1648 ~e~-------~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~---------------------------- 1692 (1930)
T KOG0161|consen 1648 LED-------AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQ---------------------------- 1692 (1930)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Confidence 722 223566777788888888888888888888888777766444
Q ss_pred hHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1026 LESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQ 1105 (1377)
Q Consensus 1026 lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~ 1105 (1377)
++....++.+.+..+.+-.........+|..+|..++..+.+....+ ....|..+++...+.
T Consensus 1693 aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~------------------~~~~Er~kka~~~a~ 1754 (1930)
T KOG0161|consen 1693 AELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL------------------RAAEERAKKAQADAA 1754 (1930)
T ss_pred hHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHH
Confidence 22222233222222222123333344444445555555554444443 344455555555555
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1106 GLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVE 1185 (1377)
Q Consensus 1106 ~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae 1185 (1377)
.+..++..-+.-+..+ .+..+-|+..+-.+..+|..-.... +..--..|..++..|..|+.++....
T Consensus 1755 ~~~~el~~Eq~~~~~l----e~~k~~LE~~~kdLq~rL~e~E~~a---------~~~~k~~i~~Learir~LE~~l~~E~ 1821 (1930)
T KOG0161|consen 1755 KLAEELRKEQETSQKL----ERLKKSLERQVKDLQLRLDEAEQAA---------LKGGKKQIAKLEARIRELESELEGEQ 1821 (1930)
T ss_pred HhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh---------hhccHHHHHHHHHHHHHHHHHHhHhh
Confidence 5555555555444444 3333333333322222222211111 00000115566666666666665443
Q ss_pred HHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----hcCccchHHHHHHHHHH
Q 000644 1186 TQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ----RGADSQKDSEREAALKS 1261 (1377)
Q Consensus 1186 ~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y----~~~~sqL~~e~e~~lk~ 1261 (1377)
-.--+- ...-...+.+..+++-.+ +.-...+..+++.+.-++..|..| ...+... ..+....+.
T Consensus 1822 ~~~~e~-~k~~rk~er~vkEl~~q~----------eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~-~~~~~k~R~ 1889 (1930)
T KOG0161|consen 1822 RRKAEA-IKGLRKKERRVKELQFQV----------EEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEA-NQNLSKYRK 1889 (1930)
T ss_pred hhhHHH-hHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 333331 112234455566666666 222333333446677777777777 3333333 455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1262 SLEELGAKNKEAALLQNKVAELEQKLQQAQ 1291 (1377)
Q Consensus 1262 ~~~ei~~l~~ei~~l~~eIn~leqkL~dSd 1291 (1377)
++.+++.........++.|+.+..+.-.+.
T Consensus 1890 ~q~ele~a~erad~~e~~~~~lr~k~r~~~ 1919 (1930)
T KOG0161|consen 1890 LQRELEEAEERADTAESELNKLRSKLRSTG 1919 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777788877777665443
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.92 E-value=1.1e-12 Score=172.50 Aligned_cols=284 Identities=17% Similarity=0.199 Sum_probs=186.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHH
Q 000644 823 RDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVE 902 (1377)
Q Consensus 823 ~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~ 902 (1377)
.-++.-+|-++|+.-..+|..|+...--...-+..++.++++++.. ++..++....++..++.+++.+...+.-|.+
T Consensus 910 ~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~---~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~ 986 (1822)
T KOG4674|consen 910 ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLE---LEAKIESLHKKITSLEEELSELEKEIENLRE 986 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555668888888888888888777777777888888887743 3445555555555555555555555555544
Q ss_pred HH----HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhh
Q 000644 903 TN----NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRD 978 (1377)
Q Consensus 903 ~~----~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e 978 (1377)
.. ...++++..+..++..++++........-.+-..+.++..++..-.+.-..+.+.-++..-+|.+....++-+.
T Consensus 987 e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen 987 ELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred HHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33467778888888888888888888888888888888888866666666777777777777777777766666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHH
Q 000644 979 IEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDL 1058 (1377)
Q Consensus 979 ~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi 1058 (1377)
.++-..+..+..|...... ....+..+...+.+-+. .++.++-.....|.-|...-
T Consensus 1067 ee~~~~~~e~~~Lk~~~~~---------------------~~~~l~e~~~~w~E~~~---~Leqe~~~~~~~~~~L~~qN 1122 (1822)
T KOG4674|consen 1067 EEFAKCNDELLKLKKSRES---------------------RHALLSEQERDWSEKED---ALEQEVNELKKRIESLEKQN 1122 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHH---------------------HHhHHhhcccchHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555544433 11233344444444443 37777777778888888888
Q ss_pred HHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHH
Q 000644 1059 ALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQ 1138 (1377)
Q Consensus 1059 ~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~ 1138 (1377)
+-+..+|..+.....+ +.++. .... ..++..-+..+|++..-+-..++-+..++.+|..+|....+.+++.-..
T Consensus 1123 slLh~qie~~s~~~~~-~n~S~---~~~g--~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~s 1196 (1822)
T KOG4674|consen 1123 SLLHDQFEELSQQSAV-SNLSA---MLLG--LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRS 1196 (1822)
T ss_pred HHHHHHHHHHhhhhhh-ccccc---cccc--hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899888888431 01111 1111 3456667777777777777777777777777766665555554444333
Q ss_pred H
Q 000644 1139 L 1139 (1377)
Q Consensus 1139 l 1139 (1377)
+
T Consensus 1197 L 1197 (1822)
T KOG4674|consen 1197 L 1197 (1822)
T ss_pred H
Confidence 3
No 6
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.91 E-value=2.8e-15 Score=191.66 Aligned_cols=241 Identities=23% Similarity=0.246 Sum_probs=183.1
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000644 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1377)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1377)
..+.....+..+......++. +--.+..+.++..++...++++..+..+|. .+.++.+|++|++.+...+.+..++++
T Consensus 762 ~~e~~~~~l~~~~~~~~~~~~-l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~-~~~d~i~t~~E~~~Ek~~~~~~~~~~r 839 (1294)
T KOG0962|consen 762 EEEDDEKLLDTIDAAEESAET-LQTDVTVLERFLKDLKLREKEIEELVSELD-SSVDGIRTVDELRKEKSKKQESLDKLR 839 (1294)
T ss_pred hhhHHHHHhcccchhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555666 667788888899999999999999999984 136889999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000644 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKEL 1177 (1377)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L 1177 (1377)
..+..++.......++++.+ .+...++.+.-.++..+|+...++. .+|.++...+.. +..+...+-.+
T Consensus 840 ke~E~~~k~~~~~~~~i~~l----~~~~~e~k~~~~~~~~~l~~~~qle----~~~~~l~e~~~~~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 840 KEIECLQKEVIEQEREISRL----INLRNELKEEKQKIERSLARLQQLE----EDIEELSEEITRLDSKVKELLERIQPL 911 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHhhHhhhcch
Confidence 99999999999999999999 9999999999999999999999888 777777766544 66666777777
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hcCccch
Q 000644 1178 EELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ------RGADSQK 1251 (1377)
Q Consensus 1178 ~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y------~~~~sqL 1251 (1377)
.+.+..+...+.+ +....+..+...+..+ ..++.++ +.|+.++.....| .-+.++|
T Consensus 912 ~~~l~e~~s~~e~----~k~~~~~~~~~aqk~~----------~~ine~~----s~l~~~~~~~~~~~~~~~~~~~~~~l 973 (1294)
T KOG0962|consen 912 KVELEEAQSEKEE----LKNERNTSEKLAQKKR----------NDINEKV----SLLHQIYKLNECFEQYGFDDLRIAQL 973 (1294)
T ss_pred hhhHHHHHHHHHH----HHHHhhHHHHHHHHHH----------HHHHHHH----HHHHHHHHhHHHHHHHhhhhhchHHH
Confidence 7777777777777 5555555555555555 8888888 8888888888777 2334555
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1252 DSEREAALKSSLEE-----------------------LGAKNKEAALLQNKVAELEQKLQQAQ 1291 (1377)
Q Consensus 1252 ~~e~e~~lk~~~~e-----------------------i~~l~~ei~~l~~eIn~leqkL~dSd 1291 (1377)
..|+..+...... +-.++.++.++..+++.+..++..++
T Consensus 974 -~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 974 -SESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5555444333322 34455666677777777777666666
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.7e-13 Score=183.18 Aligned_cols=482 Identities=16% Similarity=0.180 Sum_probs=277.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000644 663 EEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELL 742 (1377)
Q Consensus 663 k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~L 742 (1377)
..|...+......+..+......++..+..++..+...+..+..+..++......+.. .-.+.+|...|..++..+...
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~~~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCGSQDEESDLERLKEEIEKS 651 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666777776666666666666666655555551 125567777888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------------ccchh----hHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhhh
Q 000644 743 RNDLNMTQERLESIEKDLKAA-------------GLRET----DVMEKLKSAEEQ----LEQQTRVLEQATSRNSELESL 801 (1377)
Q Consensus 743 R~El~l~q~k~eslE~~l~~~-------------~~~ee----e~~~k~k~~~~~----l~~~~~~Le~e~~~~~e~~~~ 801 (1377)
+..+...+.....+..-+... ++..+ .|..++...... .......+.........+.
T Consensus 652 ~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~-- 729 (1311)
T TIGR00606 652 SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML-- 729 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH--
Confidence 888888888888777766655 12222 222222222222 1111222222211111111
Q ss_pred HHHhhHhhhHHHHHHHHHhcccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhh
Q 000644 802 HESLMRESEMKLQDALANITSRD-SEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFI------KVTSLES 874 (1377)
Q Consensus 802 ~e~~~kk~E~~L~eal~~~~~~~-~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~------~l~~~E~ 874 (1377)
.|.-.++..++.. .+...|.+++..+..++......+++....+..+..++..+.. .+..+..
T Consensus 730 ----------~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ 799 (1311)
T TIGR00606 730 ----------GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQM 799 (1311)
T ss_pred ----------HhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0111234444432 4555555666666666666666666666566555555544422 2222345
Q ss_pred hHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhh
Q 000644 875 TNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHS 954 (1377)
Q Consensus 875 ~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~ 954 (1377)
....++.++..+..++....+. .....+++.|..++.+++....+.+.+..........|..|......
T Consensus 800 ei~~l~~qie~l~~~l~~~~~~-----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e------ 868 (1311)
T TIGR00606 800 ELKDVERKIAQQAAKLQGSDLD-----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE------ 868 (1311)
T ss_pred HHHHHHHHHHHHHHHhcccccc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 5555566666666655544331 13455666666666666666666666666666666666666443311
Q ss_pred hhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHh
Q 000644 955 ATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQ 1034 (1377)
Q Consensus 955 ~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLe 1034 (1377)
......++.+++....+++.+..+|...+..+...+...+.........-.....+++. -....+.....+.
T Consensus 869 -----l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 940 (1311)
T TIGR00606 869 -----LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE---LISSKETSNKKAQ 940 (1311)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 11111222224444346666777777777666666666444333322211111212222 1222333334444
Q ss_pred hhhhhhHhhhhhhHHHHHhHHHHHHHHH-----hhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 1035 TRSGHFERESGGLVETNLKLTEDLALYE-----TKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1377)
Q Consensus 1035 e~~~~lEsElr~~v~~i~rL~kEi~~lE-----~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1377)
.. +.. ++..+..+..++..|..|. .+|.++...+. +...++++|+..+..++..++.++..++.++.
T Consensus 941 ~~---~~~-~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~----~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~ 1012 (1311)
T TIGR00606 941 DK---VND-IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELN----TVNAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012 (1311)
T ss_pred HH---HHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 444 6778888889999998887 45888888865 22678899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000644 1110 QISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVE 1185 (1377)
Q Consensus 1110 qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae 1185 (1377)
.+....+.++.+. ..+.++++...|..+..++....- +.+..+...+...++. ...+...+..|+.+|...+
T Consensus 1013 ~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~~~--~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~ 1088 (1311)
T TIGR00606 1013 QERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088 (1311)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888873 577778888888888887775411 2233444444444433 3333444444555555444
Q ss_pred HHh
Q 000644 1186 TQF 1188 (1377)
Q Consensus 1186 ~~l 1188 (1377)
..|
T Consensus 1089 ~eL 1091 (1311)
T TIGR00606 1089 KEL 1091 (1311)
T ss_pred HHH
Confidence 444
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.88 E-value=4.7e-11 Score=157.71 Aligned_cols=190 Identities=20% Similarity=0.181 Sum_probs=99.1
Q ss_pred HHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 000644 803 ESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA---------------------AGKYALLKEE 861 (1377)
Q Consensus 803 e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea---------------------~~k~~~l~~E 861 (1377)
....+.+|+++-++........+|..++-.....+..+|-+|+.++.-. ...+.-+..+
T Consensus 989 ~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 989 ELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREE 1068 (1822)
T ss_pred hccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667766666555555555555555455555555555554443332 2445566666
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHH
Q 000644 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTE 941 (1377)
Q Consensus 862 le~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~ 941 (1377)
+-.+...+.++...+..++.-++++.. .......+|-++...++.+|..|..+..-.|...+.........-..+..
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~---~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~ 1145 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQER---DWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAML 1145 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 666666666666666666666555543 33445566666666777777777777777777666666664432222222
Q ss_pred HHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 000644 942 LTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKS 997 (1377)
Q Consensus 942 L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~ 997 (1377)
++ ++.-+.+-+.-..-.+...+++.=..+-..-+-+++.-++..++.|.+.+..
T Consensus 1146 ~g--~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~ 1199 (1822)
T KOG4674|consen 1146 LG--LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTA 1199 (1822)
T ss_pred cc--hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222333333333333333333222222223344555555566666655543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.77 E-value=1.1e-09 Score=146.46 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHH
Q 000644 834 LKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAE 913 (1377)
Q Consensus 834 L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~ 913 (1377)
+..+...+..++..+.+....+..+..++..+...+..+...+..++..+..+...+..+......+......++..+..
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 751 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555544444443333333333333344444444444
Q ss_pred HHHHHHHHhhhHHHH
Q 000644 914 LQELLDSAISEKEAT 928 (1377)
Q Consensus 914 Lqe~l~~~~~e~e~~ 928 (1377)
++..+.....+....
T Consensus 752 ~~~~~~~~~~~~~~~ 766 (1179)
T TIGR02168 752 LSKELTELEAEIEEL 766 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444333333333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=2.8e-10 Score=152.19 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=34.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhH
Q 000644 978 DIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLV 1048 (1377)
Q Consensus 978 e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v 1048 (1377)
+...++|..++..|..++..|++.-..|.. .++....++.++...+..|..-+..++.+++..-
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~~~a~e-------r~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVNLAAIE-------EYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777632211111 2233334666666666666665555555554433
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.75 E-value=3e-09 Score=142.78 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 000644 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANN 888 (1377)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~ 888 (1377)
.+..+..++..++.++.+....+..+..++..+...+..+.+....+..++..+..
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 730 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444444444444444444444444444444444433
No 12
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.75 E-value=1.4e-19 Score=232.91 Aligned_cols=555 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1377)
Q Consensus 332 ~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~ 411 (1377)
.+..++...++..+.+.++.....++..++.++...+++.-.....+......+.+.+.++...|+.....+..+...+.
T Consensus 188 qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~ 267 (859)
T PF01576_consen 188 QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHH
Confidence 44444455555556666666666666666666666666666666666666666666677777777776666666666666
Q ss_pred HhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccch----HHHHHHH
Q 000644 412 DLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDII 487 (1377)
Q Consensus 412 dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~----~EL~~qi 487 (1377)
.+...+..+.+.+++-......+...+++... ||..+++-++..+..+-..+..++++. .++.+++
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~----------El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~l 337 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNA----------ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQL 337 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555544444444444444444444 666666666666665554555555544 5555555
Q ss_pred HH---hHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000644 488 RA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEV 553 (1377)
Q Consensus 488 ~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~el 553 (1377)
+. ..+.+++.+..| .........++++.+.+..++.++..++......+..+......+..++..+
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L 417 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL 417 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55 333344444443 4455555566666777777777777666655554444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhh
Q 000644 554 EEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKR 633 (1377)
Q Consensus 554 E~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~~~rqrs~eLeell~~~kskLEe~~~~ 633 (1377)
...+..+...+..+......|. ..+..|.+.+......+.+ +....+.|+..+...+..|++..+.
T Consensus 418 k~~lee~~e~~e~lere~k~L~-------~El~dl~~q~~~~~k~v~e-------Lek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 418 KNELEELQEQLEELERENKQLQ-------DELEDLTSQLDDAGKSVHE-------LEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHH-------HhhccchhhhhhhccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332222222222 2222222222111111111 1111122222222222333333333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 000644 634 VNELELLLEAEKYRIQ-ELEEQISKLEKKCE----EAEAGSKQYSDKVCELASELEAFQ-------ARTSSLEVALQMAN 701 (1377)
Q Consensus 634 leelEe~LE~~K~Rlq-ELEeqis~LEKK~k----~~eqel~el~~~l~kLk~ELE~~e-------ke~relEt~L~e~~ 701 (1377)
+...+ ..+.|++ ++...-..+++.+. .|+.....+...+..+...|+.-. ..-..++..+..+.
T Consensus 484 l~~~E----~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 484 LEAEE----QKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2234443 44444444444442 233333333333444444443111 11112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 000644 702 DKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQL 781 (1377)
Q Consensus 702 ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l 781 (1377)
..+...+....++.+.++++...+.+++..+++.....+ ++......+++.+
T Consensus 560 ~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~----------------------------~~~~~~~~~e~r~ 611 (859)
T PF01576_consen 560 IQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRARE----------------------------ELREQLAVSERRL 611 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----------------------------HHHHHHHHHHHHH
Confidence 222223333333344444444444444444444433333 3444445555556
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 000644 782 EQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-------GK 854 (1377)
Q Consensus 782 ~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~-------~k 854 (1377)
..+..+|++.+.....+. +.++.+|.++.++-+.++....-...|....++|++.|-.++.+++++. .|
T Consensus 612 ~~l~~elee~~~~~~~a~----r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek 687 (859)
T PF01576_consen 612 RALQAELEELREALEQAE----RARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEK 687 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666 6667777666664333333332333334666777777777776666655 22
Q ss_pred H-------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhh-hHHHHHHHhHHHHHHHHHHHHHHhhhHH
Q 000644 855 Y-------ALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE-LLVETNNQLKSKVAELQELLDSAISEKE 926 (1377)
Q Consensus 855 ~-------~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~-~L~~~~~~le~~i~~Lqe~l~~~~~e~e 926 (1377)
+ ..|-.||-.-+....++++.+..++..+.++..++..+.+... +--....+|+++|.+|+.+|+......-
T Consensus 688 ~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~ 767 (859)
T PF01576_consen 688 AKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRA 767 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2 3344444444444444555555555555555554444332211 1134778999999999999999999999
Q ss_pred HHHHHHHhhhccHHHHHHHH
Q 000644 927 ATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 927 ~~~e~l~~~~~~~~~L~~~l 946 (1377)
.+.--++++...|-.|+-+.
T Consensus 768 ~~~k~~rk~er~~kEl~~q~ 787 (859)
T PF01576_consen 768 EAQKQLRKLERRVKELQFQV 787 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99999999988888887766
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.73 E-value=1.5e-09 Score=145.73 Aligned_cols=318 Identities=26% Similarity=0.357 Sum_probs=155.2
Q ss_pred HHHHHhhhhhhhH-HHHHhCCCH---------HHHHHHHHhhhhHHHhhhhhHHHHHHHHH------hhHhHHHHHHHHH
Q 000644 281 EEELKRSNTEISA-IQEELGLSK---------LQLLDLEQRFSSKEALITNLTQELDLIKA------SESQAKEEISALD 344 (1377)
Q Consensus 281 ee~ls~~~~eL~~-~~e~lglsK---------aiL~~vekkf~~~k~l~k~~~~el~~~K~------~~~~lke~~~~le 344 (1377)
..-++.+-.++-. +++--|+++ ..|+.+..+++.+..++.++...++.+++ ....++.++..++
T Consensus 147 ~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~ 226 (1163)
T COG1196 147 EEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226 (1163)
T ss_pred HHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444 444455554 44555555556666666666666666655 2222233333332
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 345 ------------NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD 412 (1377)
Q Consensus 345 ------------~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~d 412 (1377)
..+..+...+......+..+..++++-...+..+...+.+....+..+..++-.+......++..+..
T Consensus 227 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~ 306 (1163)
T COG1196 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555555555555555544444444455555555555
Q ss_pred hHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHH
Q 000644 413 LTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNE 492 (1377)
Q Consensus 413 Les~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~ 492 (1377)
+...+..+......+...+.........+...+.-...-..++......+.....+++.... ....++...++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~ 383 (1163)
T COG1196 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS---ALLEELEELFEALRE 383 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Confidence 55444444444444444444444434333332222222233555555555555555554333 111233344444444
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 493 AAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKIT 572 (1377)
Q Consensus 493 ~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs 572 (1377)
.+.....++......+...+..+..++..++.+..+...+.+++..+...+..+...+......+..+...++.+...+.
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 573 QLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 573 ~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.++..+..+...+..+...+..+...+..
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 464 ELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554444
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.72 E-value=1.4e-09 Score=145.96 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=17.9
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 000644 965 IQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE 999 (1377)
Q Consensus 965 ~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~ 999 (1377)
....+....+..+..+..+|......+...|..+.
T Consensus 979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555556655555555555544
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.68 E-value=5.1e-08 Score=131.28 Aligned_cols=114 Identities=28% Similarity=0.302 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHH
Q 000644 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVA 912 (1377)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~ 912 (1377)
+|..++.++..+...+..+...+..++.++..+...+..+.+....+......+...+..+......+......++.++.
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888877777777777777777777777777777777777777766555444444444444444444555
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 913 ELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 913 ~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
.+.+.++..........+.+......+..|...+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 781 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444444444444444444444444443333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.66 E-value=3.2e-08 Score=125.68 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=83.4
Q ss_pred hhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000644 312 FSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391 (1377)
Q Consensus 312 f~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~e 391 (1377)
++..+.++++-+..+..|+..+..++.+..++...+..|.+.| +...++..+..+++........+.. +......|..
T Consensus 41 lkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~r 118 (775)
T PF10174_consen 41 LKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFER 118 (775)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHH
Confidence 3788899999999999999999999999999999999999999 8889988888887655555554444 5555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000644 392 VNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1377)
Q Consensus 392 L~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~ 436 (1377)
++.+.+.+......+.+.+..+...+..+...++...+.+.++..
T Consensus 119 l~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 119 LQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444444444444444433333333333
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.62 E-value=2.9e-09 Score=139.67 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhh
Q 000644 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRN 433 (1377)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~ 433 (1377)
+......+..+...+..+......+...+..+...+..+....+.|...+..
T Consensus 253 l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~ 304 (880)
T PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL 304 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333334444444444444444444444444444444444333333333333
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=1.4e-08 Score=133.21 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHH
Q 000644 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1377)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i 911 (1377)
.++..++..+......++++..++..+..++..+...+...++..+.++.++.++.+++..+......+...+.+|+ .+
T Consensus 516 ~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~ 594 (880)
T PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RI 594 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44555555566666777788889999999999999999999999999999999999988888888888888888888 67
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 000644 912 AELQELLDSAISEKEATGQQ 931 (1377)
Q Consensus 912 ~~Lqe~l~~~~~e~e~~~e~ 931 (1377)
.+++..+.+..+........
T Consensus 595 ~~~~~~i~~~~~~~~~~~~~ 614 (880)
T PRK02224 595 RTLLAAIADAEDEIERLREK 614 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777776444444433333
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.49 E-value=4e-07 Score=119.64 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=34.7
Q ss_pred HHhhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHH
Q 000644 242 FERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEE 297 (1377)
Q Consensus 242 lEk~~~~~~~~~KtlE~ql~~l~ee~~~~~~~~~~~~k~ee~ls~~~~eL~~~~e~ 297 (1377)
+++....++...+.+++++..+...+..+.+....+.+.+..++....++......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e 215 (880)
T PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE 215 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455567777777777777666666666666666666666666554443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=3.3e-06 Score=107.77 Aligned_cols=225 Identities=16% Similarity=0.273 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q 000644 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND------YKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDR 605 (1377)
Q Consensus 532 ~erei~eLeekiskLq~EL~elE~eLeele~klee------lq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r 605 (1377)
..+.+.++...+..+.+-+..++.....+...+.. .......+++-|..-.+++..++..+..+..++.....+
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~ 260 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSR 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777777788887777777777444222111 111222444555555555555554444444444443333
Q ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000644 606 ANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEA 685 (1377)
Q Consensus 606 a~~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~ 685 (1377)
.........++...+ +........+...++.++..+..-...+..+..++.........+...+.-++..+.+
T Consensus 261 ~~~~~~~r~~~~k~l-------e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 261 GELSEADRDRLDKQL-------EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred ccccccchHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 322222111111111 1111111112222333333333333444455555555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 686 FQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1377)
Q Consensus 686 ~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1377)
....+.-+.+-+..++..+..-..+++..+..+..++.++.-+...|..+.+.++....+++.++.++++++..|..+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666667777777777777777777777888888888888899999888877766
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.37 E-value=5.3e-06 Score=109.24 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=6.3
Q ss_pred CCccccccCCC
Q 000644 76 DKPSVVDRSSS 86 (1377)
Q Consensus 76 ~~~~~~~~~~~ 86 (1377)
+.+.+|.|+..
T Consensus 81 ~~~~~i~R~~~ 91 (880)
T PRK03918 81 GRKYRIVRSFN 91 (880)
T ss_pred CeEEEEEEEEc
Confidence 34556677653
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=0.00012 Score=94.10 Aligned_cols=265 Identities=21% Similarity=0.301 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhHHhHHH
Q 000644 179 KRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEG 258 (1377)
Q Consensus 179 ~~~~L~~~ke~~e~~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~KtlE~ 258 (1377)
.+.+++...+.++.+...|.....++..+-. +.+.+++..+..- .-++..+.--+...+..+.++|+
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~------~~~~k~e~~~~~~-------~e~~~~~kn~~~~~k~~~~~~e~ 398 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESN------EEVEKNEAVKKEI-------KERAKELKNKFESLKKKFQDLER 398 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555445555555555555555543322 3345566665543 34434444455677778889999
Q ss_pred HHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHhCCCH----HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhH
Q 000644 259 QMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSK----LQLLDLEQRFSSKEALITNLTQELDLIKASES 334 (1377)
Q Consensus 259 ql~~l~ee~~~~~~~~~~~~k~ee~ls~~~~eL~~~~e~lglsK----aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~ 334 (1377)
+-..+++.++.+.-++.++.+..+..+...+++-..|+...-.. .=++++++ .+.+.+..+...+..++....
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~---~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE---LLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999988888889999988888733332 22233322 222333344444555555555
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 335 QAKEEISALDNLLADA-------KENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALE 407 (1377)
Q Consensus 335 ~lke~~~~le~~l~eL-------~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE 407 (1377)
-++..+.+.+..+..+ .+++.-.+.++..|..+.+..+.....+..++........+....+..++.......
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5566666665444444 444444455555555555444444444444444444444444444444444433333
Q ss_pred HHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHH
Q 000644 408 AAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKL 459 (1377)
Q Consensus 408 ~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~ 459 (1377)
..+.+....+..+......+...+.++.+..--.-+.++-+.|++.=|.-+.
T Consensus 556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 556 QELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3333333333333332222222232333333333344444455554444433
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=0.00015 Score=93.39 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=93.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHH
Q 000644 978 DIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTED 1057 (1377)
Q Consensus 978 e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kE 1057 (1377)
..+++.|+.+++.+=+.- . ...+.+++....+++.+.+.|..+...+..-..-+.+..-.++++.++
T Consensus 884 k~~i~~lq~~i~~i~~e~-~------------q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 884 KARIKELQNKIDEIGGEK-V------------QAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHHHHHHHHHhhchh-h------------HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 456788888887775543 2 345567788888888888888888877665555556666677788888
Q ss_pred HHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000644 1058 LALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1377)
Q Consensus 1058 i~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1377)
+.+.+..++.|...+. +...-+.++......+...++.+...+..+...++......+.|
T Consensus 951 ~~~~e~e~~~L~e~~~----~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 951 IEDTEKELDDLTEELK----GLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888854 22333467888888888888888888888888887777766666
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.07 E-value=0.00052 Score=93.52 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhhHHHh
Q 000644 345 NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEA-AMADLTGNIARM 420 (1377)
Q Consensus 345 ~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~-~i~dLes~i~eL 420 (1377)
..+..+...+.....++..+...+ ..........+....+.+..+...|..+...+...++ .|..+...+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~---~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l 354 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEI---KELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQL 354 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 334444444444444444444444 2223334555566666777777777777776666655 355444444333
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=0.00047 Score=91.50 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=4.2
Q ss_pred ccccccCC
Q 000644 78 PSVVDRSS 85 (1377)
Q Consensus 78 ~~~~~~~~ 85 (1377)
.-+|.|+.
T Consensus 79 ~y~i~R~~ 86 (895)
T PRK01156 79 VYQIRRSI 86 (895)
T ss_pred EEEEEEEE
Confidence 34556653
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00071 Score=89.79 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000644 771 MEKLKSAEEQLEQQTRVLEQATS 793 (1377)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~ 793 (1377)
..++..+..++..++..+.....
T Consensus 586 ~~~l~e~~~~l~~l~~~l~~le~ 608 (895)
T PRK01156 586 RSRSNEIKKQLNDLESRLQEIEI 608 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444455555554444443
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=0.0025 Score=81.41 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000644 714 AADEKRKLQDTSNGYNEKLAEAENLL---ELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1377)
Q Consensus 714 lek~k~~LE~EieElkeqLeElE~~L---e~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~ 790 (1377)
++..++.-+.++..+..+|..++..- ..++.++++..-.+..++.++..- ..-.+-.-++.+.+.|..++..|.+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN--EFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666555443 378888888887777677666554 2223456677777788887777766
Q ss_pred HhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 791 ATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVT 870 (1377)
Q Consensus 791 e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~ 870 (1377)
....--... .-.+.+|.+++++ .+.+. ..|+.++..|+.+...+++..+.++...-+.+.+.....
T Consensus 760 ~~~~~k~~~----~~i~~lE~~~~d~---~~~re-------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e 825 (1174)
T KOG0933|consen 760 KERALKKCE----DKISTLEKKMKDA---KANRE-------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHE 825 (1174)
T ss_pred HHHHHHHHH----HHHHHHHHHHhHh---hhhhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332333 3445677777653 12222 456666777899999999999999999999999988888
Q ss_pred hhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Q 000644 871 SLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEA 927 (1377)
Q Consensus 871 ~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~ 927 (1377)
.++..+.-.++.+..+...+..+.++.+.|-......+.++..++++|.........
T Consensus 826 ~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 826 ELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 888888888888877777665555555555555555555555555555554444333
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.71 E-value=0.0071 Score=82.76 Aligned_cols=218 Identities=17% Similarity=0.257 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000644 711 LNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1377)
Q Consensus 711 l~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~ 790 (1377)
..++++.+......+......+..+...+...+..+.-++.....+..++... ..+.+..+..++..+...+..
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~l~~ 696 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA------KEERKEQIEEQLNELEEELKQ 696 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333333333333332 444455556666666666655
Q ss_pred HhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHH-----------HHHHHHHHHHHHHH-------
Q 000644 791 ATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLE-----------GQVKMYEEQLAEAA------- 852 (1377)
Q Consensus 791 e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq-----------~qik~~q~~~~ea~------- 852 (1377)
.......+...+......+.++++...... ..++..++..+. .+++.|+.+....=
T Consensus 697 ~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~------~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 697 LKQELEELLEELKEQLKELRNELKAQWQEL------EAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 555555554444444444444333321111 111222222333 33333333222211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---hhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 000644 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANN---KANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATG 929 (1377)
Q Consensus 853 ~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~---~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~ 929 (1377)
.++..++.++..+...|...+..+..+-.=...+.. ....+......|..+.+.++.++..+...+...........
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 850 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRR 850 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555554444332222222 23344556677777777777777777777776666665555
Q ss_pred HHHHhhhccHH
Q 000644 930 QQLASHMNTVT 940 (1377)
Q Consensus 930 e~l~~~~~~~~ 940 (1377)
.++......+.
T Consensus 851 ~~le~~~~~~~ 861 (1201)
T PF12128_consen 851 KELEEELKALE 861 (1201)
T ss_pred HHHHHHHHHHH
Confidence 55444444333
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=0.01 Score=76.12 Aligned_cols=210 Identities=16% Similarity=0.222 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhHHHhHhhhHHHHHHH
Q 000644 360 ELEDIKLKLQEEV---NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD-----LTGNIARMKELCSELEEKL 431 (1377)
Q Consensus 360 El~~l~~kleee~---~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~d-----Les~i~eL~e~~eeLEeeL 431 (1377)
.|..+..+++.-+ ...+.....+..+...|..+..+|+..-....-....++- +-..+..+.+...+++..+
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 4445555556667778888888888877777777666654 3444455555555666666
Q ss_pred hhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHH
Q 000644 432 RNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAA 511 (1377)
Q Consensus 432 ~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~ 511 (1377)
..+..-+.+-+. ++..+-+++.+.-...|.+...+...+..+...++.+...+++.-....-|+.-....
T Consensus 758 ke~~~~~k~~~~----------~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l 827 (1174)
T KOG0933|consen 758 KEKERALKKCED----------KISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL 827 (1174)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555555555 5555556666666666655555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1377)
Q Consensus 512 Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk 579 (1377)
++.+..++.++..+...++.+..++..+...+............++.....++-.....++.+-....
T Consensus 828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 828 EKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 55555555555555555555555555555555555555555555544444444444444433333333
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.54 E-value=0.0087 Score=74.60 Aligned_cols=220 Identities=15% Similarity=0.198 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1377)
Q Consensus 322 ~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~ 401 (1377)
.+++-...++.+..+.+|+...+.++..|...+...+.+.+.++.-+ ..+++.+++...++..+.+.+..+..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti-------~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI-------QGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55556667778888888888888888888888888888877776555 55556666666666666666666666
Q ss_pred HHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHH------HH
Q 000644 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAA------AT 475 (1377)
Q Consensus 402 ~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~------~~ 475 (1377)
...+....|-.....+......+.+++..+.. .|+.+...|.-++.+.+-+.+...+..... ..
T Consensus 156 eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~t----------kl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~ 225 (1265)
T KOG0976|consen 156 ELSAKAHDIFMIGEDLHDKNEELNEFNMEFQT----------KLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQE 225 (1265)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 65555555555442222222222233333322 233344444455555555555444433222 22
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE 555 (1377)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~ 555 (1377)
++|+..+-.-|+-.-+.-++..+.-..-+.-.-..++--.+.++.....+..+..-+..+...++..+..++.++..+..
T Consensus 226 ~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 226 NTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333222222222233333333333333333333344444445555555555555555555555555555555544444
Q ss_pred HHH
Q 000644 556 EKK 558 (1377)
Q Consensus 556 eLe 558 (1377)
-..
T Consensus 306 t~t 308 (1265)
T KOG0976|consen 306 TRT 308 (1265)
T ss_pred HHH
Confidence 333
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.52 E-value=0.022 Score=78.57 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHHHHhhhhhhhHHHHHhCCCHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 281 EEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSE 360 (1377)
Q Consensus 281 ee~ls~~~~eL~~~~e~lglsKaiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~E 360 (1377)
-..+......++....-.|+++=..++|+..+.+.......++.++..++..+..++..+..+......+..
T Consensus 413 l~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~-------- 484 (1486)
T PRK04863 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK-------- 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455556666677778888877777777777777755556666666555555555544444332222221
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhh
Q 000644 361 LEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCK 440 (1377)
Q Consensus 361 l~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K 440 (1377)
.. .. -.....|......-.-......+-.....+.....+|+..+.. .......-..|++
T Consensus 485 ------~~----Gk--v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------q~~~~~~~~~~~~ 544 (1486)
T PRK04863 485 ------IA----GE--VSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ--------QQRAERLLAEFCK 544 (1486)
T ss_pred ------Hc----CC--cCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 11 11 1111222222222222222223333333333333333322111 1111222224444
Q ss_pred hhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHH
Q 000644 441 TDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAK 498 (1377)
Q Consensus 441 ~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k 498 (1377)
.++.......+|+.+.-..+..--.+++..+++.++..++..+++++.+.+....
T Consensus 545 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 545 ---RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred ---HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455566777776666666666666666666666666666555555544333
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.50 E-value=0.016 Score=75.66 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=96.1
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHhhhhhh
Q 000644 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRS-VELEQQLNLVELKSSDS 532 (1377)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~-keLE~Ql~elq~K~~e~ 532 (1377)
|+...++++.+..++ ..++...+-..-....+.|...+.+.....++++.. ..+..++.+...++..+
T Consensus 338 Ei~~~r~~~~~~~re-----------~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRRE-----------VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 555555555444332 346667777777778888888888888888888887 88888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000644 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEE 591 (1377)
Q Consensus 533 erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEe 591 (1377)
..++..++..+..|..++..+...+...+.........+.++...+...+..++.|..-
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888888888777777777777777777777766666665543
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.48 E-value=0.013 Score=73.58 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000644 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1377)
Q Consensus 706 eL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~ 785 (1377)
+......++...+..+..+.+..+.........+..++.++..+...+...+.+|... -.+++.-+-+....+.++.
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa---~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA---LKEAEAAKASEALALAEIK 438 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334445566667777777777777777777778888888888888888888888888 6666666666666666666
Q ss_pred HHHHHH
Q 000644 786 RVLEQA 791 (1377)
Q Consensus 786 ~~Le~e 791 (1377)
+--+..
T Consensus 439 ~l~e~~ 444 (522)
T PF05701_consen 439 ALSESE 444 (522)
T ss_pred Hhhccc
Confidence 533333
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=0.021 Score=73.06 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=81.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHH
Q 000644 824 DSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVET 903 (1377)
Q Consensus 824 ~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~ 903 (1377)
+-|+. +++++.+.+.+++|..+++++.-+...-.++.++...+..++..+....++...+.. +
T Consensus 666 rLe~~---k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~--------------e 728 (1200)
T KOG0964|consen 666 RLELL---KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKR--------------E 728 (1200)
T ss_pred HHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------H
Confidence 34555 999999999999999999999999999999999999999888888888886666554 4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 904 NNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 904 ~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
.+...++...+++.+.--.-..+.+.-.+.+...+...+-.++
T Consensus 729 ~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el 771 (1200)
T KOG0964|consen 729 LNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESEL 771 (1200)
T ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555556666666666666666666666666666666666665
No 35
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.39 E-value=0.018 Score=71.20 Aligned_cols=292 Identities=19% Similarity=0.166 Sum_probs=155.4
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHhcc---chHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 000644 453 AELELKLKSLEEQHNETGAAAATASQ---RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529 (1377)
Q Consensus 453 ~El~~~~k~lee~~~~he~~~~~~~q---k~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~ 529 (1377)
.+|.+..+.+...+..-+++-+-+.+ -.+.|++-..++.-..=+-|..-.+....+.++..++..||..+..+....
T Consensus 346 ~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kER 425 (961)
T KOG4673|consen 346 LELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKER 425 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 35555554444444443333332222 224555544443322223333446677788899999999999999988888
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhh
Q 000644 530 SDSEREVREFSEKLSQ--LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1377)
Q Consensus 530 ~e~erei~eLeekisk--Lq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~ 607 (1377)
+.+.+++..+...+.. ++.++.+....|..+...-+.+.+++-.-...|+.|..+++..+--+....+.+..++.-.+
T Consensus 426 Dalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~ 505 (961)
T KOG4673|consen 426 DALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEEN 505 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence 8888888866554332 23567778888888888888888888888888888877777766444444444433221111
Q ss_pred hhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000644 608 MSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQ 687 (1377)
Q Consensus 608 ~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~e 687 (1377)
.+......- ++.+. .+..-|..+..++..........+.-++.+.
T Consensus 506 ~lk~il~~K------------------ee~Ek-----------------~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le 550 (961)
T KOG4673|consen 506 KLKSILRDK------------------EETEK-----------------LLQETIEKHQAELTRQKDYYSNSRALAAALE 550 (961)
T ss_pred HHHHHhhhH------------------HHHHH-----------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111111000 00000 0000111111122222222222222222222
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 688 ARTSSLEVALQ---------------MANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQER 752 (1377)
Q Consensus 688 ke~relEt~L~---------------e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k 752 (1377)
.....+...+. .+++....|..++.++...+.+.++. +-++-+-+|-++.-++.+
T Consensus 551 ~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~----------aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 551 AQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ----------AARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 22222222222 23333334444444444433333332 223334677777777777
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 753 LESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQAT 792 (1377)
Q Consensus 753 ~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~ 792 (1377)
++..|++-+.. -.++-++-+=+.+||+.|+++|...+
T Consensus 621 lqaaE~R~eel---~q~v~~TTrPLlRQIE~lQ~tl~~~~ 657 (961)
T KOG4673|consen 621 LQAAERRCEEL---IQQVPETTRPLLRQIEALQETLSKAA 657 (961)
T ss_pred HHHHHHHHHHH---HhhccccccHHHHHHHHHHHHHhhhh
Confidence 77777776666 55666777889999999999987553
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.33 E-value=0.00047 Score=77.86 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHH
Q 000644 378 VEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELEL 457 (1377)
Q Consensus 378 ~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~ 457 (1377)
+...+.....++..+...|.........++..+..|...|..+.+.++..+..|..+ ..-|..+...-.+.+.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~-------~~kL~~~e~~~de~er 78 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEA-------TEKLEEAEKRADESER 78 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH-------HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555554444444333333333 3333333444445555
Q ss_pred HHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 000644 458 KLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVR 537 (1377)
Q Consensus 458 ~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~ 537 (1377)
-++.|+.....++ +.|+.+-..+..++..+............++..++..+.....++..++..+.
T Consensus 79 ~~k~lE~r~~~~e--------------eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~ 144 (237)
T PF00261_consen 79 ARKVLENREQSDE--------------ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK 144 (237)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence 5666666555555 55566666666666666666666777777778888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000644 538 EFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1377)
Q Consensus 538 eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~~~r 610 (1377)
.+...+..+.+.+..++..-..+..+...|...|..|...++....|...++..+..|...+...+..+...+
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888877777776444444333
No 37
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.30 E-value=0.028 Score=69.49 Aligned_cols=233 Identities=21% Similarity=0.200 Sum_probs=112.4
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1377)
Q Consensus 303 aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL 382 (1377)
.-|..+++||--.=+=|+.++.+++-+|-++... -.+ ..+++-.+.|...-.+=..|..++=-....+..++.++
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~kslk~ela~~-l~~----DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ 483 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQKSLKKELAAA-LLK----DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI 483 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-hhh----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4556668888444444555666666555533220 001 12222222333333333333333322333344444444
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHH
Q 000644 383 KTQE-------AQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAEL 455 (1377)
Q Consensus 383 ~e~e-------ae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El 455 (1377)
++.. ..|..|.+++..++.-+...+..=.-+..+|..+....++.++.+........-.++ ++.+--.=+
T Consensus 484 ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~---~~~a~qat~ 560 (961)
T KOG4673|consen 484 KEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA---QALAEQATN 560 (961)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHhh
Confidence 4433 234444444444444333333333334444455555544444444443332222222 111111111
Q ss_pred HHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHH
Q 000644 456 ELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNL 524 (1377)
Q Consensus 456 ~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~e 524 (1377)
-..++ +.+.+.-.--.++|++|..|--|+..++.++-+...++ ..|+.++.+++.++..+-+++..
T Consensus 561 d~a~~---Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 561 DEARS---DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred hhhhh---hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 11122 12222222223788888888888888888888877776 88999999999999888777653
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHH
Q 000644 525 VELKSSDSEREVREFSEKLSQLSTA 549 (1377)
Q Consensus 525 lq~K~~e~erei~eLeekiskLq~E 549 (1377)
-. .=+-|+|..+...+.+....
T Consensus 638 TT---rPLlRQIE~lQ~tl~~~~ta 659 (961)
T KOG4673|consen 638 TT---RPLLRQIEALQETLSKAATA 659 (961)
T ss_pred cc---cHHHHHHHHHHHHHhhhhhH
Confidence 22 22234555554444444333
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.28 E-value=0.074 Score=73.69 Aligned_cols=128 Identities=21% Similarity=0.353 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000644 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1377)
Q Consensus 706 eL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~ 785 (1377)
.+...+..++.....+..++...+.++...+..+..+...+.....+....+..|+..|++-....+.+-...+ ..+.
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~--~~l~ 1066 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--DELH 1066 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH--HHHH
Confidence 45555555666666666666666666666666666777777766777777888899999998888887766665 7777
Q ss_pred HHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 786 RVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAG 853 (1377)
Q Consensus 786 ~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~ 853 (1377)
..|-.-+++++.+. -..+....|...|.++|++++..++.+...+..+..
T Consensus 1067 ~~l~~~~~~~~~~~------------------~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~ 1116 (1486)
T PRK04863 1067 ARLSANRSRRNQLE------------------KQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116 (1486)
T ss_pred HHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888777 123445556667778888888888888888877763
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.21 E-value=0.052 Score=68.93 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhh
Q 000644 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1377)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1377)
+|......+..+......++..+..+...+..|....+.-..........| ..++|.|-+...
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y-----------------~~~rk~ll~~~~ 161 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLY-----------------RELRKSLLANRF 161 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCc
Confidence 455555555555555566666666666555555555555444444443333 345788888888
Q ss_pred hhHHHHHHhccchHHHHHHHHH-----hHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 000644 468 ETGAAAATASQRNLELEDIIRA-----SNEAAEEAKSQLRELEPRFIAAEQRSVE 517 (1377)
Q Consensus 468 ~he~~~~~~~qk~~EL~~qi~~-----~~~~~Ek~k~~l~~l~~~~~~~Ekk~ke 517 (1377)
..|.++..+-++...++..+.+ ..+...+|+..+..+......++.....
T Consensus 162 ~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 162 SFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877 4445555555555555544444444433
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.20 E-value=0.0051 Score=75.95 Aligned_cols=232 Identities=13% Similarity=0.193 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000644 335 QAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1377)
Q Consensus 335 ~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLe 414 (1377)
.+..-+++..+..+.+...|.+...++.++..++++-...+...+..+......+..++.++..++..+..+++.+.+|.
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666777777777777887777888888889999999999999999999999999999999999
Q ss_pred hhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccch-----HHHHHHHHH
Q 000644 415 GNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN-----LELEDIIRA 489 (1377)
Q Consensus 415 s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~-----~EL~~qi~~ 489 (1377)
.+...|...+..+...++.--..+...+. .+..|+..|+=....|+..+.+.+-++ ....+.+..
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n----------~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQN----------RVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 99999988888888777765444444444 566677777777778887777777666 223333333
Q ss_pred -hHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 490 -SNEAAEEAKSQL-RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY 567 (1377)
Q Consensus 490 -~~~~~Ek~k~~l-~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleel 567 (1377)
++.++...+.+- ......+.+.+.. +...++.++....-..-..+...+.+..++..+..+...+..++.....+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L 322 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSAL 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhH
Confidence 333333333333 1122222222222 22344444443333344444444555555555555555555555444444
Q ss_pred HHHHHHHHHHHH
Q 000644 568 KDKITQLELILN 579 (1377)
Q Consensus 568 q~kIs~LEsqLk 579 (1377)
.+.|..|..++.
T Consensus 323 ~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 323 EKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHhhhh
Confidence 444444444433
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.18 E-value=0.059 Score=68.44 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1377)
Q Consensus 303 aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL 382 (1377)
..+..+...++..+.-...+...|..+..+...-+..+..+......++..+-.....+...-..|+.. |
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~----------l 174 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQ----------L 174 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHH----------H
Confidence 667777777777777777777777777777777777777777777777776666666665555555333 3
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHH
Q 000644 383 KTQEAQVSNVN-----EELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKL 431 (1377)
Q Consensus 383 ~e~eae~~eL~-----eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL 431 (1377)
......|.... .+....+.-...+...+.+|..-|..+|....++...+
T Consensus 175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~ 228 (569)
T PRK04778 175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL 228 (569)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332 24556677777788888888888888888877777666
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.15 E-value=0.0076 Score=74.49 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=105.2
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000644 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1377)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1377)
|+...++.|++.+..+. .++-.|..+..-+..++..+...+........+...+..-++.++.+..-+.
T Consensus 93 El~~ar~~l~e~~~~ra-----------~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k 161 (546)
T KOG0977|consen 93 ELATARKLLDETARERA-----------KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK 161 (546)
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Confidence 88888888888766655 4555555566666666666766777777788888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000644 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1377)
Q Consensus 534 rei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele 593 (1377)
+.+..+++.+..|+.++..+...|..+...+.+..-....+++..+.|-.++.++.....
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999999999999888888888888888888888775554
No 43
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.15 E-value=0.063 Score=67.50 Aligned_cols=156 Identities=22% Similarity=0.212 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhh--hhhhhhhhhhhhhchHHHHHH
Q 000644 381 VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDEN--FCKTDSLLSQALANNAELELK 458 (1377)
Q Consensus 381 kL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e--~~K~e~~lsq~~~~~~El~~~ 458 (1377)
.......++..++.++..++......+....+.-..+..-....++|...|...... ....++ |+..+
T Consensus 28 ~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~----------e~~k~ 97 (522)
T PF05701_consen 28 RVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDS----------ELAKF 97 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHhHH
Confidence 334455566667777777777777777777776666666666666666666665543 222333 44444
Q ss_pred H-hhHHHHhhh-----hHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000644 459 L-KSLEEQHNE-----TGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDS 532 (1377)
Q Consensus 459 ~-k~lee~~~~-----he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~ 532 (1377)
+ +.++..... ....+..++.+|..--.-|+.++.-+++.+..+..+-..+..+..+......-......++.++
T Consensus 98 r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L 177 (522)
T PF05701_consen 98 RAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEEL 177 (522)
T ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233222211 1223445566665555555666666666666665555555555555555544455555555555
Q ss_pred HHHHHHHHHHHHHH
Q 000644 533 EREVREFSEKLSQL 546 (1377)
Q Consensus 533 erei~eLeekiskL 546 (1377)
..+|..+.+.+...
T Consensus 178 ~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 178 SKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444444433
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.13 E-value=0.062 Score=66.73 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000644 544 SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1377)
Q Consensus 544 skLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLE 589 (1377)
..+......+..++..+.....+....|..|+..+..+..+..+.+
T Consensus 195 kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e 240 (546)
T PF07888_consen 195 KELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQE 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444443333
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.11 E-value=0.067 Score=66.47 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHhcccchhhhhHHHHHH
Q 000644 808 ESEMKLQDALANITSRDSEAKSFSEKLK 835 (1377)
Q Consensus 808 k~E~~L~eal~~~~~~~~Ea~~l~k~L~ 835 (1377)
+|-..++.+=++.-..+.|++-|-.+|.
T Consensus 375 ~L~~el~~~e~~lqEer~E~qkL~~ql~ 402 (546)
T PF07888_consen 375 KLSRELQMLEEHLQEERMERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555554545444
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.10 E-value=0.02 Score=67.03 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000644 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1377)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEel 592 (1377)
.+-.....+...++.+...+.++..++.........++.++..+...+.........|++.+..+...+.++....
T Consensus 65 ~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 65 DLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 3333344444444444444555555555555555555555555555555555555555555555555555554443
No 47
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.08 E-value=0.08 Score=66.12 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000644 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA 851 (1377)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea 851 (1377)
+.-..-..||..+-++|+.+.=+-.++. +--.++-.+ +.+|. -++.+.-=.|+++|..|+.-..+.+-.
T Consensus 464 ~~eq~yskQVeeLKtELE~EkLKN~ELt----~~~nkLslE-kk~la------QE~~~~~~elKk~qedi~~~k~qee~~ 532 (786)
T PF05483_consen 464 ESEQHYSKQVEELKTELEQEKLKNTELT----VNCNKLSLE-KKQLA------QETSDMALELKKQQEDINNSKKQEEKM 532 (786)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666655555554 111121111 11110 112222234566777777776666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 000644 852 AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSA 921 (1377)
Q Consensus 852 ~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~ 921 (1377)
-+....|...--+++.. +++.++++....+++..++.-+....-...-+..+.+..|.-|...++..
T Consensus 533 ~kqie~Lee~~~~Lrne---les~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~L 599 (786)
T PF05483_consen 533 LKQIENLEETNTQLRNE---LESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNL 599 (786)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666666665433 45777777777777766544443333333344444444444444444433
No 48
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.00 E-value=0.12 Score=65.19 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=105.8
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH----HhhhhhhHHHHHHHHH
Q 000644 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK-------YALLKEELDSYFIK----VTSLESTNEELQRQVV 884 (1377)
Q Consensus 816 al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k-------~~~l~~Ele~~~~~----l~~~E~~~~~~e~e~~ 884 (1377)
.|-.++.+=+=|. +++.+++|.|----.-+.-.... ...+.+||.++++. .+.+...-.-+++++.
T Consensus 430 RL~sL~~RlSyAv---rrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~ 506 (739)
T PF07111_consen 430 RLPSLSNRLSYAV---RRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVG 506 (739)
T ss_pred HHHHHhHHHHHHh---cccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5666667777777 89999999885433222222211 23677888877774 3444566778889988
Q ss_pred HHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHH
Q 000644 885 EANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAE 964 (1377)
Q Consensus 885 e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~ 964 (1377)
++.+ .+.++-..|......|+..+.+-++.+.+.......+...+..+......|..+|++
T Consensus 507 ~ArE---qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~---------------- 567 (739)
T PF07111_consen 507 RARE---QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ---------------- 567 (739)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------
Confidence 8888 455666788888899999999999999888888888888888887777777777711
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 000644 965 IQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKS 997 (1377)
Q Consensus 965 ~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~ 997 (1377)
+-+.-.+.|+.|+.++|+....
T Consensus 568 -----------QQ~~y~~alqekvsevEsrl~E 589 (739)
T PF07111_consen 568 -----------QQEVYERALQEKVSEVESRLRE 589 (739)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456788888887776555
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.98 E-value=0.031 Score=65.36 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 498 KSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSER--------EVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1377)
Q Consensus 498 k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~er--------ei~eLeekiskLq~EL~elE~eLeele~kleelq~ 569 (1377)
|..|..|...++.+=.+-..|+.+...|..++..... ....|...+..++..|.....+...+...+..+..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4556666666666655555555555555555544442 33445555555666665555555555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.+..+.............++.++..++..+..
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 55555555555555555555555555544444
No 50
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.89 E-value=0.28 Score=65.98 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=152.4
Q ss_pred hhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhH-HHHHhCCCHHHHHHH------------------
Q 000644 248 TANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISA-IQEELGLSKLQLLDL------------------ 308 (1377)
Q Consensus 248 ~~~~~~KtlE~ql~~l~ee~~~~~~~~~~~~k~ee~ls~~~~eL~~-~~e~lglsKaiL~~v------------------ 308 (1377)
.++..|||+||.+..+ ..|.+.++|.+|+++|. +|.++|||||||.||
T Consensus 104 ~~~~~~ktles~~~~~-------------~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcHQEdS~WPLsEp~~L 170 (1294)
T KOG0962|consen 104 RTKMEFKTLESVIWAI-------------NDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCHQEDSTWPLSEPKNL 170 (1294)
T ss_pred HHHHHHHHHhhhheee-------------ecCccccccchhhhhhHHHHHhcCCcHHHHhhhheecccCCCCCCCChHHH
Confidence 4677889999999999 48999999999999999 999999999999999
Q ss_pred HHhh-------------hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 309 EQRF-------------SSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEV 372 (1377)
Q Consensus 309 ekkf-------------~~~k~l~k~~~~el~~~K~~~~~lke~~~~le---~~l~eL~~~l~~k~~El~~l~~kleee~ 372 (1377)
++|| ++++++++++..+++..+..+.|++-.+.+.. ..+......+.....++..+..++
T Consensus 171 KkkfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~---- 246 (1294)
T KOG0962|consen 171 KKKFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENEL---- 246 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 8888 99999999999999999999999999888886 677777777888888887777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH-HhHhhhHHHHHHHhhhHhhh
Q 000644 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA-RMKELCSELEEKLRNSDENF 438 (1377)
Q Consensus 373 ~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~-eL~e~~eeLEeeL~~~~~e~ 438 (1377)
.........|+..-..+..+......+...+..+.+++..+...|. ..+.++..|...+...+..+
T Consensus 247 ~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~ 313 (1294)
T KOG0962|consen 247 GPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERL 313 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHH
Confidence 8888888999999999999999999999999999999999998887 56666777777666666533
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.89 E-value=0.24 Score=65.22 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 000644 769 DVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHE 803 (1377)
Q Consensus 769 e~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e 803 (1377)
.+...+..|.+.++.....|.+..+.+..-++...
T Consensus 440 ~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 440 HIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 35667778888888888888888766665554433
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.22 Score=64.47 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchh--------------hhhHHHHHH
Q 000644 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSE--------------AKSFSEKLK 835 (1377)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~E--------------a~~l~k~L~ 835 (1377)
++.-.+++..-++.|+..+.....+..++..+.--+....+. |++..++..+.-++ +..+.....
T Consensus 406 leke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek-l~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~ 484 (1195)
T KOG4643|consen 406 LEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK-LLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETE 484 (1195)
T ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334456788888899989999988888888333333333222 22233332222222 122223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHH
Q 000644 836 NLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQ 915 (1377)
Q Consensus 836 ~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lq 915 (1377)
.+..+||.+-.-+....--...+.+....+.+.+...-+..+...+++-+++..++++..+|..|....-.|..- .+=.
T Consensus 485 el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~ 563 (1195)
T KOG4643|consen 485 ELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNG 563 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHH
Confidence 444445555445555555556677777777777788888888888889999999999999999999888888764 4455
Q ss_pred HHHHHHhhhHHHHHHHHHhhhccHHHHH
Q 000644 916 ELLDSAISEKEATGQQLASHMNTVTELT 943 (1377)
Q Consensus 916 e~l~~~~~e~e~~~e~l~~~~~~~~~L~ 943 (1377)
..|+-..++++.-...+++.+....-|+
T Consensus 564 ~~LEq~~n~lE~~~~elkk~idaL~alr 591 (1195)
T KOG4643|consen 564 ALLEQNNNDLELIHNELKKYIDALNALR 591 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666555544433
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.84 E-value=0.2 Score=62.78 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHh
Q 000644 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANI 820 (1377)
Q Consensus 741 ~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~ 820 (1377)
.+..+-...+.....+--++... -+.+....+...+.+...+.-=+..+--|.++.++.+.+..+-+
T Consensus 496 kLslEkk~laQE~~~~~~elKk~---qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~---------- 562 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQ---QEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE---------- 562 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 44444333443333333344433 44455555555555444444333334446777744443333221
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhH
Q 000644 821 TSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1377)
Q Consensus 821 ~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L 900 (1377)
|+. -+|.+-+.-....+-++....+.+..++..+.-+.-.++.-...+++++++-.-+-. ..++-
T Consensus 563 -----Ev~---~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKK-------k~~aE 627 (786)
T PF05483_consen 563 -----EVK---CKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKK-------KITAE 627 (786)
T ss_pred -----HHH---HHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHH
Confidence 222 223332222333333333333444444444444444444555555555554444443 33444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 901 VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 901 ~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
......|+.+|+.|+.+++.+..-.++..+++.+-.-+=...+..|
T Consensus 628 ~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L 673 (786)
T PF05483_consen 628 SKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEEL 673 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5556678899999999998888777777777766544444444444
No 54
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.82 E-value=0.31 Score=64.50 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHH
Q 000644 385 QEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEE 464 (1377)
Q Consensus 385 ~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee 464 (1377)
....+......+...+..+..++..+.++...+..+...... +.-.+..+..+++.|++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~---------------------~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN---------------------AADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhHHHHHHHHHH
Confidence 445566666666666666666666666666433333222111 22223355666677776
Q ss_pred HhhhhHHHHHHh---ccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 000644 465 QHNETGAAAATA---SQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSE 541 (1377)
Q Consensus 465 ~~~~he~~~~~~---~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLee 541 (1377)
.+..--+.++.. +..+.++..+|++........-..+..|+..+....+..+.+-.-......+.......+.++.+
T Consensus 551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544444433 33337777777775444444444445555544444444444444444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000644 542 KLSQLSTALKEVEEEKKQLH 561 (1377)
Q Consensus 542 kiskLq~EL~elE~eLeele 561 (1377)
.++.+++.+.....++...+
T Consensus 631 ~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 631 EISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 55555555554444444333
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.80 E-value=5.4e-05 Score=97.97 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=51.6
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhh
Q 000644 899 LLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRD 978 (1377)
Q Consensus 899 ~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e 978 (1377)
.+.+....|..+|..|+.++.....+...+..++.+..... .....-+|-+.|-+-.-+....+...-.++++.
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g-~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~----- 573 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKLTLQG-EFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQA----- 573 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT---BTTTEEEEEESS-HHHHHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHH-----
Confidence 34566666777888888887777777777777776522111 001111223333333333444444444444444
Q ss_pred HHHhhHHHHHHHHHHH
Q 000644 979 IEANNLNEKVSVLEGQ 994 (1377)
Q Consensus 979 ~~~keL~~kl~~~e~~ 994 (1377)
+|.+|.++|..+++.
T Consensus 574 -En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 574 -ENEDLLARLRSLEEG 588 (722)
T ss_dssp -HHHHHHHHHHHHTTT
T ss_pred -HHHHHHHHHHhcccC
Confidence 899999999888765
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.77 E-value=0.34 Score=63.35 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 000644 849 AEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1377)
Q Consensus 849 ~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~ 928 (1377)
-++...+.+..+|.++++..+..+.+.--++++....+.+..+...++-..-..+.+.|=-.|.+..+.=.+--...+.+
T Consensus 1418 ~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~v 1497 (1758)
T KOG0994|consen 1418 GDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEV 1497 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33445666777888888888777777777777777777666555554444444444444444444433322223333343
Q ss_pred HHHHHh-----hhccHHHHHHHH
Q 000644 929 GQQLAS-----HMNTVTELTEQH 946 (1377)
Q Consensus 929 ~e~l~~-----~~~~~~~L~~~l 946 (1377)
+++... .-.+|.+|+.++
T Consensus 1498 A~~vL~l~lp~tpeqi~~L~~~I 1520 (1758)
T KOG0994|consen 1498 AEEVLALELPLTPEQIQQLTGEI 1520 (1758)
T ss_pred HHHHHhccCCCCHHHHHHHHHHH
Confidence 333222 223455566555
No 57
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.68 E-value=7e-05 Score=96.95 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1377)
Q Consensus 508 ~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele 561 (1377)
...+......+..++..++.++..+..++..+...+..++..+......+.+..
T Consensus 159 ~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e 212 (722)
T PF05557_consen 159 LEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAE 212 (722)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444444333333333
No 58
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.62 E-value=0.43 Score=60.39 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHH
Q 000644 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEE 846 (1377)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~ 846 (1377)
..+.+..++..+.-|++.|-..-.+-+-...|++...-++++-+.. -++.+ ++--..- ++-|+...|...+..
T Consensus 415 ~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~ri-r~l~~sl---e~qrKVeqe~emlKa 490 (1265)
T KOG0976|consen 415 AKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRI-RALMDSL---EKQRKVEQEYEMLKA 490 (1265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHH-HHHhhCh---hhhcchHHHHHHHHH
Confidence 3445555666677888888888888888886666666666654443 22222 1111111 344677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchh-hhHHHHHHHhHHHHH----------HHH
Q 000644 847 QLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSEN-ELLVETNNQLKSKVA----------ELQ 915 (1377)
Q Consensus 847 ~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~-~~L~~~~~~le~~i~----------~Lq 915 (1377)
...--.+|+.-|+.|+-..+.. ..+++.+++.+-++.+.-. +--..+.+.-.+-|. .|=
T Consensus 491 en~rqakkiefmkEeiQethld----------yR~els~lA~r~ag~h~adssqrdselrsAkktIqevkadn~k~q~lL 560 (1265)
T KOG0976|consen 491 ENERQAKKIEFMKEEIQETHLD----------YRSELSELAHRKAGDHPADSSQRDSELRSAKKTIQEVKADNPKAQSLL 560 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhccCCCCCCCCCcccHHHHHHHHHHHhccccCHHHHHHh
Confidence 7777778999999998877665 4456666666554433322 222223333333332 222
Q ss_pred HHHHHHhhhHHHHHHHHHhhhccH
Q 000644 916 ELLDSAISEKEATGQQLASHMNTV 939 (1377)
Q Consensus 916 e~l~~~~~e~e~~~e~l~~~~~~~ 939 (1377)
.....-+.+.-.-+.++++.|..+
T Consensus 561 ~evrq~q~k~leenv~lRkgma~a 584 (1265)
T KOG0976|consen 561 AEVRQRQKKSLEENVFLRKGMARA 584 (1265)
T ss_pred hchhhhhhhccChHHHHHHHHHHH
Confidence 333333334444456677766654
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.57 E-value=0.62 Score=60.68 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=83.7
Q ss_pred hhHHHHhhhhHHHHHHhccch--HHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH----
Q 000644 460 KSLEEQHNETGAAAATASQRN--LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE---- 533 (1377)
Q Consensus 460 k~lee~~~~he~~~~~~~qk~--~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e---- 533 (1377)
+.|-+.-.=-++++.-+|.++ ..|+.+|=+.++++-....+.+..+...+.+...+..|.-+-..+.....-..
T Consensus 274 ~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se 353 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSE 353 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhc
Confidence 334444444455666666666 66777777777766666666666555555555555554444433332222211
Q ss_pred ----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 534 ----------REVREFSE-KLSQLSTALKEVEEEKKQLH-DQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 534 ----------rei~eLee-kiskLq~EL~elE~eLeele-~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.+...|+. +.=++--+...+-..+.+++ +.++....+...|++.-+.++-.+..|++.++.+..++.+
T Consensus 354 ~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~e 433 (1195)
T KOG4643|consen 354 NEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAE 433 (1195)
T ss_pred chhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHH
Confidence 11122211 00011111112222333332 3455556666677777777888888888888888888888
Q ss_pred HHHHhhhhhhhhHHH
Q 000644 602 DEDRANMSHQRSIEL 616 (1377)
Q Consensus 602 ~e~ra~~~rqrs~eL 616 (1377)
.++..+.+......+
T Consensus 434 led~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 434 LEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666655544433
No 60
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.8 Score=61.56 Aligned_cols=140 Identities=21% Similarity=0.291 Sum_probs=62.7
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHhhh
Q 000644 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRF----IAAEQRSVELEQQLNLVELKS 529 (1377)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~----~~~Ekk~keLE~Ql~elq~K~ 529 (1377)
++..+...+.. .......+....+....+...+......++.+...+..+...+ ...+.+...+...+..++.++
T Consensus 299 e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 377 (908)
T COG0419 299 EIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377 (908)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 3333344444444444444455555555555555554442222 222223333333334444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000644 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRI 594 (1377)
Q Consensus 530 ~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~ 594 (1377)
.........+...+..+...+......+......+.........+...+..+...+..++.....
T Consensus 378 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333334444445555555555555555555445454444444455555444445444444443
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.32 Score=61.44 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=79.6
Q ss_pred HHHHHhccchHHHHHHHHH----hHHHHHHHHHHHhhhhhhHHHHHHHHHHH-H-HHHHHHHhhhhhhHHHHHHHHHHHH
Q 000644 471 AAAATASQRNLELEDIIRA----SNEAAEEAKSQLRELEPRFIAAEQRSVEL-E-QQLNLVELKSSDSEREVREFSEKLS 544 (1377)
Q Consensus 471 ~~~~~~~qk~~EL~~qi~~----~~~~~Ek~k~~l~~l~~~~~~~Ekk~keL-E-~Ql~elq~K~~e~erei~eLeekis 544 (1377)
.+-..-|++..||+-+++- =.++.|.-|..+..-+.++.++++.++.= | ....++..+...-...+-.+..+..
T Consensus 361 erqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ 440 (1118)
T KOG1029|consen 361 ERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKK 440 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444456666777777766 45666667777766666666655544321 1 1223444444444445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhh
Q 000644 545 QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1377)
Q Consensus 545 kLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~ 607 (1377)
.+..++..+...+..+..++.+....+......+..+...+.-.-.++..+..+|.+.+.+.-
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777766666666666665555555555555555555555444333
No 62
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.77 Score=59.69 Aligned_cols=186 Identities=14% Similarity=0.232 Sum_probs=90.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000644 660 KKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1377)
Q Consensus 660 KK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~L 739 (1377)
.++..+...+..+...+.+...+|+.+....+..++.........+.|...++.+...+..++..+.-.... |
T Consensus 678 ~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~-------L 750 (1200)
T KOG0964|consen 678 SELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKE-------L 750 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH-------H
Confidence 333344444444444444444444444444444444433333334444444444444444444444444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH--
Q 000644 740 ELLRNDLNMTQERLESIEKDLKAAGLR--ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-- 815 (1377)
Q Consensus 740 e~LR~El~l~q~k~eslE~~l~~~~~~--eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e-- 815 (1377)
..++..+.-..+...+++.++-.-=+. .-+-.+.++.+...|+.+...|...++.|.++. ..+--+|+-|+.
T Consensus 751 e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~----~rk~~le~~l~~kL 826 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE----TRKTALEANLNTKL 826 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444444444444444444433221000 122356688888999999999998888888877 555555554443
Q ss_pred ------HHHHhccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 816 ------ALANITSR-DSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLK 859 (1377)
Q Consensus 816 ------al~~~~~~-~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~ 859 (1377)
.....+.- +++-. -.|...+.++-.+.-.++.+...+.++.
T Consensus 827 ~~r~~~l~~ei~~~~d~~~~---~el~~~~~el~~~~~~~e~~~~el~~l~ 874 (1200)
T KOG0964|consen 827 YKRVNELEQEIGDLNDSSRR---SELELEKSELESEEKRVEAAILELKTLQ 874 (1200)
T ss_pred HhhhhHHHHHhhhcccccch---hhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 21111111 11111 2344555555555555555555555333
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.39 E-value=0.055 Score=68.16 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhh
Q 000644 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1377)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1377)
.+..+..+++.+......+...+..+...+..+......++..|..+...+.+.+.
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~ 269 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666665555666666666555555554
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.34 E-value=1.2 Score=58.71 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000644 692 SLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLN 747 (1377)
Q Consensus 692 elEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~ 747 (1377)
.....++.+....+....-+..++......+.-+.....++.+++..++.|+.+.-
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666777777777778888888888888887777653
No 65
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.34 E-value=4.7e-05 Score=98.39 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 000644 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1377)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~ 891 (1377)
.+|-.|..||-+++..+++...+...+.-|+.++.+++.++++.++.+..+++.+.+...
T Consensus 363 ~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 363 SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888899999999999999999999999888887766443
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.33 E-value=1 Score=57.74 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=141.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000644 721 LQDTSNGYNEKLAEAENLLELLRNDLNMTQERLES---IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSE 797 (1377)
Q Consensus 721 LE~EieElkeqLeElE~~Le~LR~El~l~q~k~es---lE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e 797 (1377)
.-..+.+++.+|.|+++.+-.+-|+--.+.+.+++ +-+.|..+ =.++.+++.++..+|.....++-....++..
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~k---l~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKK---LGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444566667777766665555554333333331 11122222 2223333333333333332222222222222
Q ss_pred hhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 000644 798 LESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNE 877 (1377)
Q Consensus 798 ~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~ 877 (1377)
.-+.|+....+.-.-.+|-..|.+++---...|-.+|.+=...+--+...--||.+.++.|.++-..+.
T Consensus 235 -----------~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNq 303 (617)
T PF15070_consen 235 -----------YLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQ 303 (617)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 223444433333344455555566655433335555533222223335667899999999999999999
Q ss_pred HHHHHHHHHHhhhccc----cch---------------------hhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000644 878 ELQRQVVEANNKANNS----SSE---------------------NELLVETNNQLKSKVAELQELLDSAISEKEATGQQL 932 (1377)
Q Consensus 878 ~~e~e~~e~~~~~~~~----~~~---------------------~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l 932 (1377)
+++..+.-+.--..+. .+. .+.+......++.+-+.|...|.+-...+..+...+
T Consensus 304 qL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~v 383 (617)
T PF15070_consen 304 QLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQV 383 (617)
T ss_pred HHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999997644322110 000 122345566677777788888887777776666666
Q ss_pred HhhhccHHHHHHHH-----HHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 000644 933 ASHMNTVTELTEQH-----SRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIK 996 (1377)
Q Consensus 933 ~~~~~~~~~L~~~l-----~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~ 996 (1377)
..+.......+..+ |-+.|.|.|.-..++...+-+.+.|+. +-||.++...||-.+.
T Consensus 384 a~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~~e-------~adl~e~~e~le~~~~ 445 (617)
T PF15070_consen 384 ASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLMEE-------KADLKERVEKLEHRFI 445 (617)
T ss_pred ccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHH
Confidence 65555544443332 235688888887888888888887777 7788888887776553
No 67
>PRK11637 AmiB activator; Provisional
Probab=97.29 E-value=0.13 Score=63.23 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhH
Q 000644 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1377)
Q Consensus 342 ~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~ 421 (1377)
.++..+.++..++.....++..+..++.+-... +.....++..+...+.........++..|..+...|..+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~-------l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ-------LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555555555555333333 3333333333333333333333333333333333333333
Q ss_pred hhhHHHHHHHh
Q 000644 422 ELCSELEEKLR 432 (1377)
Q Consensus 422 e~~eeLEeeL~ 432 (1377)
.........+.
T Consensus 117 ~~l~~~~~~l~ 127 (428)
T PRK11637 117 QQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 68
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=1.2 Score=57.24 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=49.7
Q ss_pred hhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 1035 TRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAI 1114 (1377)
Q Consensus 1035 e~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~a 1114 (1377)
.....+..++......+.-+.+.+.++...+.+|..++. ..+....++...+..+...+..+.-....+
T Consensus 538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e-----------k~~~~le~i~~~~~e~~~ele~~~~k~~rl 606 (698)
T KOG0978|consen 538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE-----------KSEAKLEQIQEQYAELELELEIEKFKRKRL 606 (698)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555566666666667777766632 122244455555666666666666666677
Q ss_pred HHHHhhhhHHHHHHHhH
Q 000644 1115 MEENNSLNETYQNAKNE 1131 (1377)
Q Consensus 1115 eeE~~~L~~~~e~~~kE 1131 (1377)
++++.+|+-+++...+.
T Consensus 607 eEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 607 EEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 77777776555555544
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.21 E-value=0.92 Score=58.79 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=46.4
Q ss_pred hHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000644 1047 LVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1377)
Q Consensus 1047 ~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1377)
....+..+..++..++.++.+|..++..+ .+...+..+......++..+.+++..+..+..++......+..+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~--~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTI--PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889999999999999998622 22233455555555555555555555555555555555555554
No 70
>PRK11637 AmiB activator; Provisional
Probab=97.06 E-value=0.39 Score=59.02 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000644 383 KTQEAQVSNVNEELDKVSKE 402 (1377)
Q Consensus 383 ~e~eae~~eL~eELe~l~~~ 402 (1377)
...+.++..+..++..++..
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.03 E-value=0.00039 Score=90.06 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000644 715 ADEKRKLQDTSNGYNEKLAEA-ENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATS 793 (1377)
Q Consensus 715 ek~k~~LE~EieElkeqLeEl-E~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~ 793 (1377)
...+.+|+.++.-++...+.. ...+..+...+.........++..... ...+...++.+|+.+...|-...+
T Consensus 458 ~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~-------~~~~~~~lq~qle~lq~~l~~~~~ 530 (713)
T PF05622_consen 458 RERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENRE-------ANEKILELQSQLEELQKSLQEQGS 530 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666666665444433 223334444444333333333332221 123334444444444444433333
Q ss_pred hhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 000644 794 RNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA-AGKYALLKEELDSYFIKVTSL 872 (1377)
Q Consensus 794 ~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea-~~k~~~l~~Ele~~~~~l~~~ 872 (1377)
+..... .++.+ |.++++.+.....+-. +...+|.+++..+... ..++..|...|..--..+.+.
T Consensus 531 ~~~d~~----~lk~~----le~~~~~l~e~~~e~~-------~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~ 595 (713)
T PF05622_consen 531 KSEDSS----ELKQK----LEEHLEKLRELKDELQ-------KKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAM 595 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccHH----HHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhH
Confidence 332223 23333 3334443333333333 3334455544444333 334444444443333333333
Q ss_pred hh----hHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Q 000644 873 ES----TNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSA 921 (1377)
Q Consensus 873 E~----~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~ 921 (1377)
+. ..+.+..-+..+..+.+....+...|-....-.+..|..|+..++..
T Consensus 596 eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~ 648 (713)
T PF05622_consen 596 EERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKS 648 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 21 22333444444555555544555555555555566667777666444
No 72
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.01 E-value=1.2 Score=52.59 Aligned_cols=259 Identities=18% Similarity=0.254 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHH
Q 000644 657 KLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLN-AAADEKRKLQDTSNGYNEKLAEA 735 (1377)
Q Consensus 657 ~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~-elek~k~~LE~EieElkeqLeEl 735 (1377)
.+.++...+.+........+.+...-.+.++.-|+++...-.........+..... ........+..-+.++...+++-
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444444444455556666666544444433222222111 12344556677777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH
Q 000644 736 ENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD 815 (1377)
Q Consensus 736 E~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e 815 (1377)
......+..+-..+..++..+=..-..+ +.-|....+...-++.-+.+-|+..+....... +.....-+.=|.+
T Consensus 127 ~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~---~k~~~~~~~~l~~ 200 (309)
T PF09728_consen 127 SERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK---EKAKQEKEILLEE 200 (309)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHH
Confidence 6666677777777777777665544444 667776666666555555566655543322222 1222222222333
Q ss_pred --HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccc
Q 000644 816 --ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNS 893 (1377)
Q Consensus 816 --al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~ 893 (1377)
++..+.....+.. .||.-+-+...++|.-+.-.-..+.+.+.|++.+.-.+..+|..+..+.+.......-+...
T Consensus 201 ~~~~~~~~~~E~~Lr---~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 201 AAQVQTLKETEKELR---EQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333 45444444444445445555577789999999999999999999999999988888877777
Q ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000644 894 SSENELLVETNNQLKSKVAELQELLDSAISE 924 (1377)
Q Consensus 894 ~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e 924 (1377)
..+...+......+..++..|+.-+-..+++
T Consensus 278 ~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 278 AEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7788888888888888888888777766643
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.91 E-value=2.3 Score=54.27 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHH
Q 000644 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1377)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i 911 (1377)
..+..+..++...+.+..+....+..|..+-...+..|.........++..+.- .++-.-......-.......|
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek-----~nLPGlp~~y~~~~~~~~~~i 453 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK-----SNLPGLPEDYLDYFFDVSDEI 453 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444443321 244444455556666677889
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhh-HHHhhHHHHHHH
Q 000644 912 AELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRD-IEANNLNEKVSV 990 (1377)
Q Consensus 912 ~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e-~~~keL~~kl~~ 990 (1377)
..|...|+..--+++.....+..+..+|++|.+.- ..--..+.+.|.+=+.++.= +.+-++...|..
T Consensus 454 ~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t------------~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~ 521 (560)
T PF06160_consen 454 EELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT------------EELIDNATLAEQLIQYANRYRSDNPEVDEALTE 521 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 99999999999999999999999999999998877 44455566666655554443 467778888877
Q ss_pred HHHHHHH
Q 000644 991 LEGQIKS 997 (1377)
Q Consensus 991 ~e~~~~~ 997 (1377)
++..-..
T Consensus 522 Ae~~F~~ 528 (560)
T PF06160_consen 522 AEDLFRN 528 (560)
T ss_pred HHHHHHh
Confidence 7765433
No 74
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.81 E-value=1.6 Score=50.86 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000644 348 ADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1377)
Q Consensus 348 ~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLe 414 (1377)
..+...+..+.+...+++.++-+-......+.....+.+.+|.++......+......+-..+..+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555554444444444444444444444444444444444333333333333
No 75
>PF13514 AAA_27: AAA domain
Probab=96.77 E-value=4.6 Score=55.68 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=29.0
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000644 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTV 1008 (1377)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~ 1008 (1377)
.+.++.+.....+...+..++..++..+..|+.++..-...
T Consensus 732 l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 732 LELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566678888888888888888888877665443
No 76
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.69 E-value=1.2 Score=57.87 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 644 EKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQD 723 (1377)
Q Consensus 644 ~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~ 723 (1377)
.+.|..+++..+..|+.+++.-+..+..+..+...+..--..-..++..+-..|...+.+-..|...+..=++-|-.|=.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35555566666666666555555555555554443333201122344444445555555544555555555556666666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 724 TSNGYNEKLAEAENLLELLRNDLNMTQERLE 754 (1377)
Q Consensus 724 EieElkeqLeElE~~Le~LR~El~l~q~k~e 754 (1377)
.+.+-+.+|+.++..+-....|+..++.++.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777776666666666666655
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.67 E-value=3.4 Score=52.76 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=97.2
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1377)
Q Consensus 303 aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL 382 (1377)
..+..++..++..+.-.+.+..+|..+..+...-+..+..+......++..+-.........-..+ ...+
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~L----------e~~L 170 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEEL----------EKQL 170 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHH----------HHHH
Confidence 556666666666666666666666666666666666666666666666655555555554444444 3334
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHH
Q 000644 383 KTQEAQVSNVNE-----ELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELEL 457 (1377)
Q Consensus 383 ~e~eae~~eL~e-----ELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~ 457 (1377)
......|..... +....+.-...+...+..|..-|..+|.....+...+-. .|..
T Consensus 171 ~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~--------------------ql~e 230 (560)
T PF06160_consen 171 ENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPD--------------------QLEE 230 (560)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH--------------------HHHH
Confidence 444444444333 455566677777777777887778888777777665544 2222
Q ss_pred HHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 000644 458 KLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEP 506 (1377)
Q Consensus 458 ~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~ 506 (1377)
+.....+... ..-+=.|..+...|+.++..+..+...|..|..
T Consensus 231 L~~gy~~m~~------~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l 273 (560)
T PF06160_consen 231 LKEGYREMEE------EGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL 273 (560)
T ss_pred HHHHHHHHHH------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 2211111111 011222367777788888777777777766644
No 78
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.56 E-value=2.5 Score=49.98 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000644 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1377)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElk 729 (1377)
++..++...-.+...|...+..-......++.+++...+.+..++..-.....+...-...+-++......+..++..+.
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666666666666666666666556666666555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 000644 730 EKLAEAENLLELLRN 744 (1377)
Q Consensus 730 eqLeElE~~Le~LR~ 744 (1377)
.++.-+++....|+.
T Consensus 293 ~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 293 KKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666555554443
No 79
>PF13514 AAA_27: AAA domain
Probab=96.53 E-value=6.5 Score=54.27 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=17.8
Q ss_pred hhHHHHHhHHHHHHHHHhhHHHHHHHh
Q 000644 1046 GLVETNLKLTEDLALYETKLSDLQAKL 1072 (1377)
Q Consensus 1046 ~~v~~i~rL~kEi~~lE~qlkeL~~qL 1072 (1377)
.....+..+..++..++.++..|...+
T Consensus 747 ~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 747 ELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333445555677777777777777765
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.52 E-value=0.23 Score=52.23 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 491 NEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDK 570 (1377)
Q Consensus 491 ~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~k 570 (1377)
+.-.+.+-.....++...-.++.+...++.++..|+.|...++.++..+...+......+...+...... ..+...
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhh
Confidence 3333444444445555555555556666666666666666666666666666666665555443332222 255555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000644 571 ITQLELILNQSNTRSSELEEELRITK 596 (1377)
Q Consensus 571 Is~LEsqLk~LqsrireLEEele~L~ 596 (1377)
|..|+..+.....++....+.+..+.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444333
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.45 E-value=1.8 Score=56.40 Aligned_cols=103 Identities=26% Similarity=0.292 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 633 RVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLN 712 (1377)
Q Consensus 633 ~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~ 712 (1377)
+..+++..+..++..+...++++..++.++..+-..-.+-..+.+.|-..|..++.....+|..|.-=.-..-||...++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555556666666666777777766633322111223456666666667776667777655444433335555555
Q ss_pred HH-------HHHHHHHHHHhhhHHHHHHHH
Q 000644 713 AA-------ADEKRKLQDTSNGYNEKLAEA 735 (1377)
Q Consensus 713 el-------ek~k~~LE~EieElkeqLeEl 735 (1377)
+. ...+..-+.+|.+|+.+|.++
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 445555566666666655544
No 82
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.44 E-value=4.3 Score=51.25 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVT 870 (1377)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~ 870 (1377)
+++-.-.=+|.||.+++-+.+++...++.+...=..|-
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~ 97 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLI 97 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 35555566999999999999999988888877666543
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.43 E-value=0.73 Score=50.95 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhh
Q 000644 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1377)
Q Consensus 373 ~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~ 438 (1377)
-.+..+...|.++...+.++..+...++.--..-++.+..+...-..||.......++++.+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555555555555554433
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=2 Score=55.24 Aligned_cols=96 Identities=23% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000644 315 KEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNE 394 (1377)
Q Consensus 315 ~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~e 394 (1377)
.|.++..+-.++.-+++.+..++.....++..+.+......+...++..|..++ ..+..-...+-.....+...-+
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL----g~~~~~~~~~~q~~e~~~t~~e 737 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL----GIISSKQRDLLQGAEASKTQNE 737 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccchhhHHhHHHhccCChH
Confidence 445555566666666666666666666666666666666666666666666666 3222222222222223333334
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 000644 395 ELDKVSKEKEALEAAMADLT 414 (1377)
Q Consensus 395 ELe~l~~~ke~lE~~i~dLe 414 (1377)
++..+..+...+...-.++.
T Consensus 738 el~a~~~e~k~l~~~q~~l~ 757 (970)
T KOG0946|consen 738 ELNAALSENKKLENDQELLT 757 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 85
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.28 E-value=7.6 Score=52.36 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 778 EEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYA 856 (1377)
Q Consensus 778 ~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~-~l~k~L~~lq~qik~~q~~~~ea~~k~~ 856 (1377)
+.++-.++..|.+++.-|.-+. .+.-+++..+. .|.+-..+--+.- .|-...+.+...+..+|.+++..-.+..
T Consensus 699 e~~~~e~~~~lseek~ar~k~e----~~~~~i~~e~e-~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAE----NLLLEIEAELE-YLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHH----HHHHHHHHHHH-HHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788888888887777777 44445555443 2222111111111 1112223333445556777777776777
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHh
Q 000644 857 LLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAI 922 (1377)
Q Consensus 857 ~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~ 922 (1377)
++..||- ++...-...-.-++.....+++..=--.+..+|..+.+.++....-...++..|+..+
T Consensus 774 ~~~~eLs-sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~~leae~ 838 (1317)
T KOG0612|consen 774 SLQRELK-SQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQDQLEAEQ 838 (1317)
T ss_pred hhHHHhh-hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Confidence 7788887 6665555544444444444444421112333444444444444444456666666665
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.23 E-value=6.2 Score=50.89 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 719 RKLQDTSNGYNEKLAEAENLLELLRNDLNMTQE 751 (1377)
Q Consensus 719 ~~LE~EieElkeqLeElE~~Le~LR~El~l~q~ 751 (1377)
...-.++...+..|+.+....+.|+..+.++..
T Consensus 282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 334455555556666666666666666554433
No 87
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=6.3 Score=50.92 Aligned_cols=94 Identities=26% Similarity=0.356 Sum_probs=72.3
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccc
Q 000644 814 QDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNS 893 (1377)
Q Consensus 814 ~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~ 893 (1377)
..+++..++...++. ..+..|+.++-.++..+++.+..+.....|++.+.-.+.+++--.+.+..++........ .
T Consensus 551 ~~~le~~kk~~~e~~---~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-~ 626 (698)
T KOG0978|consen 551 TQSLEMLKKKAQEAK---QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES-G 626 (698)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c
Confidence 336777777777777 788888888888888888888888888888888888888888888888777766655433 5
Q ss_pred cchhhhHHHHHHHhHHHH
Q 000644 894 SSENELLVETNNQLKSKV 911 (1377)
Q Consensus 894 ~~~~~~L~~~~~~le~~i 911 (1377)
.++-..|.++.+.+++-+
T Consensus 627 ~s~d~~L~EElk~yK~~L 644 (698)
T KOG0978|consen 627 ASADEVLAEELKEYKELL 644 (698)
T ss_pred ccccHHHHHHHHHHHhce
Confidence 566778888888887644
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=6.2 Score=50.65 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000644 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1377)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1377)
.++.+-++++++++-|+.|-..-..++...+
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqkE 351 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQKE 351 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777776666555444444333
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.13 E-value=0.44 Score=50.20 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=65.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1377)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~L 581 (1377)
..|..-..++..+...++.++..+.......+.+|..|..+++.+..++..++..+..+...+..-....+..+ .+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HH
Confidence 34455566677777777777777777777778888888888877777777777777777777766665555444 56
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 000644 582 NTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 582 qsrireLEEele~L~EeLeE 601 (1377)
+-+|..|++++......+.+
T Consensus 79 ~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 66666666666544444444
No 90
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=5.6 Score=49.29 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHH
Q 000644 927 ATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQI 995 (1377)
Q Consensus 927 ~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~ 995 (1377)
..+-+++.+...|-+|.+++ ..-+...+.. ...++.+..+-.|..||-.+|..-
T Consensus 405 ~~a~k~~~a~~e~i~lk~ql------------~~l~~~~n~t---de~~~~e~evq~l~~kl~llekas 458 (772)
T KOG0999|consen 405 ILACKYAVAVDEMIQLKDQL------------KALYHQLNYT---DEKVQYEKEVQELVEKLRLLEKAS 458 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHhhccc---chhhhHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777 2222221111 123467777888888877666554
No 91
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.94 E-value=0.81 Score=51.97 Aligned_cols=124 Identities=20% Similarity=0.326 Sum_probs=91.8
Q ss_pred hhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000644 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1377)
Q Consensus 311 kf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~ 390 (1377)
..+++...++.....+++++...+.+..++..++..+.+++.++.+.+.+|..+..++ +........+ .....+.
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~----~~~e~kl~~v-~~~~e~~ 92 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI----KRAEEKLSAV-KDERELR 92 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc-ccHHHHH
Confidence 3456666666788888888888888888888888888888888888888888888888 3333333222 3455788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhh
Q 000644 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFC 439 (1377)
Q Consensus 391 eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~ 439 (1377)
.|..++..++.+..+++..+.++...+..+....+.+...+..+...+.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888877777777777666644443
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.93 E-value=5.2 Score=51.32 Aligned_cols=47 Identities=30% Similarity=0.289 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHH
Q 000644 896 ENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTEL 942 (1377)
Q Consensus 896 ~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L 942 (1377)
.-..+..+...|.+.+.++.+++.+...+.......++....+++.|
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555555555555555555444444433
No 93
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.89 E-value=5 Score=46.87 Aligned_cols=69 Identities=25% Similarity=0.408 Sum_probs=28.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000644 525 VELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1377)
Q Consensus 525 lq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele 593 (1377)
+..|...+...+.++......+...+..+-.....++.++-++...+.++......+..++..+....+
T Consensus 11 ~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 11 LELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444444444444444444444444444444443
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.88 E-value=7.5 Score=48.82 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=74.0
Q ss_pred hhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000644 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1377)
Q Consensus 311 kf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~ 390 (1377)
+...++..+..++-|+.+.+.-+.+++--+......+..+...+..+++|++.|....++=.+.+... .=+-++|.
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve 335 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVE 335 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHH
Confidence 44666777777888999999999999998889999999999999999999999988873322222111 12344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHh
Q 000644 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKE 422 (1377)
Q Consensus 391 eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e 422 (1377)
....+...+......+...++.|...+-.+..
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555555555555555555555555544433
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.72 E-value=4.4 Score=44.95 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000644 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEE 591 (1377)
Q Consensus 512 Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEe 591 (1377)
-.++..|..++.+++.++.++..+-.-|..-.-+-...|..++..-+.+-.-|..+...|..|...+.....+.+.++..
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566555555555555544444433333334444444444444444444444444444444444444444444
Q ss_pred HH
Q 000644 592 LR 593 (1377)
Q Consensus 592 le 593 (1377)
+.
T Consensus 91 lk 92 (194)
T PF15619_consen 91 LK 92 (194)
T ss_pred HH
Confidence 43
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.69 E-value=11 Score=49.27 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHH
Q 000644 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEE 846 (1377)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~ 846 (1377)
++.|.+....++..+..+|...+..-..+..-+.-.+..++..++. .+....+.-.+.. +++..|+..++.+..
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~q---eri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQ---ERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHH
Confidence 4678888899999999999999888887776555555556655555 5555555444445 788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000644 847 QLAEAAGKYALLKEELDSYFIKVTSLE 873 (1377)
Q Consensus 847 ~~~ea~~k~~~l~~Ele~~~~~l~~~E 873 (1377)
-+.++.+.+.+...||--|-+.|+++-
T Consensus 434 ~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999998874
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.44 E-value=12 Score=48.13 Aligned_cols=195 Identities=20% Similarity=0.240 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 778 EEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYAL 857 (1377)
Q Consensus 778 ~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~ 857 (1377)
...|..++.-++....+...+..--+..+..|...+..--.....+.++++..-..++.+..+|+.+..++..=-....-
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555445555666777755566666666666665554433333334
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhc
Q 000644 858 LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMN 937 (1377)
Q Consensus 858 l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~ 937 (1377)
|..+++.+--...-. .-=.-+.|+-.-+----.+-.+.....|.|-.+|+.+...|+.+....+++.=|=.+.-.
T Consensus 473 L~~e~e~~~k~~~Rs-----~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe 547 (594)
T PF05667_consen 473 LVKELEKLPKDVNRS-----AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDE 547 (594)
T ss_pred HHHHHHhCCCCCCHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCH
Confidence 444444332221100 001111111111111112334556777888889999999999998887777655544222
Q ss_pred cHH----HHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHH
Q 000644 938 TVT----ELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLE 992 (1377)
Q Consensus 938 ~~~----~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e 992 (1377)
.+- .|+.-| ..-+++...+...+...+++.||..+++...
T Consensus 548 ~~rkaYK~La~lh---------------~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 548 AARKAYKLLASLH---------------ENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 222 233333 2235667777777888889999998886543
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.36 E-value=1.9 Score=49.04 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=69.2
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000644 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1377)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1377)
.|++..+.+..+......++.++...-..++++..+|+....++++...+|+ ...|.+ .+.+++-.+..++
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~~~~----e~~aL~~E~~~ak 102 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVKDER----ELRALNIEIQIAK 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHH----HHHHHHHHHHHHH
Confidence 3444444444444444444444455555666777777777777777777764 223224 3344444444444
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000644 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE-KFALETRIKELEEL 1180 (1377)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e-~~~le~~ie~L~~~ 1180 (1377)
.++..|..++..++.++..+ ...+..+...+..++ ..+..++..+.. +..+......+..+
T Consensus 103 ~r~~~le~el~~l~~~~~~l----~~~i~~l~~~~~~~e--------------~~~~e~~~~~e~e~~~i~e~~~~~~~~ 164 (239)
T COG1579 103 ERINSLEDELAELMEEIEKL----EKEIEDLKERLERLE--------------KNLAEAEARLEEEVAEIREEGQELSSK 164 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444 444444444442222 333333333333 44444444444444
Q ss_pred HHHHHHHhhh
Q 000644 1181 LVNVETQFKE 1190 (1377)
Q Consensus 1181 i~~ae~~l~e 1190 (1377)
+......++.
T Consensus 165 ~~~L~~~l~~ 174 (239)
T COG1579 165 REELKEKLDP 174 (239)
T ss_pred HHHHHHhcCH
Confidence 4444444444
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=8.9 Score=49.69 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=89.7
Q ss_pred hhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 000644 441 TDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQ 520 (1377)
Q Consensus 441 ~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~ 520 (1377)
-|..+--+.+++.+++.--+..+.-|.+|-.......-=+.+|-.++++.|+...........|......+-.....+..
T Consensus 627 le~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~ 706 (970)
T KOG0946|consen 627 LEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD 706 (970)
T ss_pred HHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556777778887777777778888777776666668888888888888877777778888877777777778888
Q ss_pred HHHHHHhhhhhhH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 521 QLNLVELKSSDSE---REVREFS-------EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1377)
Q Consensus 521 Ql~elq~K~~e~e---rei~eLe-------ekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk 579 (1377)
|++.+..++.-.. +++.... +.+..+..++..+.....-+...++.+...+.++.+...
T Consensus 707 q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 707 QLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 8888877776222 3333322 224444444544544444555555444444444444333
No 100
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.73 E-value=8.4 Score=42.48 Aligned_cols=198 Identities=17% Similarity=0.241 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000644 654 QISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLA 733 (1377)
Q Consensus 654 qis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLe 733 (1377)
.+..+..++..++..+..|...+.-....+..+....-..+.....+.... .........++.++.+.++--+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~-------~kdEE~~e~~e~qLkEAk~iaE 77 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRA-------QKLEEKMEAQEAQLKEAKHIAE 77 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777777666666666655554444443322222211 1122233344444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHH
Q 000644 734 EAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKL 813 (1377)
Q Consensus 734 ElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L 813 (1377)
++.+.. .....++--++|+|.....+-+-.+.+...+...++.++..|......--.+. -..-+.+..|
T Consensus 78 ~adrK~-------eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~----q~~d~~e~~i 146 (205)
T KOG1003|consen 78 KADRKY-------EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE----QKEEKYEEEL 146 (205)
T ss_pred HHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh----hhHHHHHHHH
Confidence 333333 23333444467777666555666788888888888888777766543333332 2333444444
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 814 QDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKV 869 (1377)
Q Consensus 814 ~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l 869 (1377)
+.--+.+-..+.-|...-....+|+-++-+++..+.....+...+..+|.+....|
T Consensus 147 k~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 147 KELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444455566666666666666666666666666666555443
No 101
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.71 E-value=8.4 Score=42.45 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 533 erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
+..+..+..+++-+..++..++..+..+..++.+.......-+..++.+.++...+++..+.+.-++.+
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777788888888888888888777776666
No 102
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.55 E-value=22 Score=46.57 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000644 1217 VKDRNALYEQVIQLQRELQIAQTAIAEQ 1244 (1377)
Q Consensus 1217 ~~~~d~l~~~v~~~~~el~~l~~~I~~y 1244 (1377)
-++|-.++.++..||++|.++...-+.|
T Consensus 632 E~EK~~v~etm~kLRnELK~LKEDAATF 659 (717)
T PF09730_consen 632 ENEKAMVSETMMKLRNELKALKEDAATF 659 (717)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888887777
No 103
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.26 E-value=25 Score=45.92 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 506 PRFIAAEQRSVELEQQLNLVELKSSDS--EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1377)
Q Consensus 506 ~~~~~~Ekk~keLE~Ql~elq~K~~e~--erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqL 578 (1377)
..+..+..++..++.++..+..++..+ ...+..+...+..+...+......+..+..++..+...+..++..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555442 2345555555555555555555555555544444444444444444
No 104
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.23 E-value=15 Score=43.35 Aligned_cols=263 Identities=16% Similarity=0.278 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHH
Q 000644 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1377)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~ 909 (1377)
|...+..|+.+.+.+..+++-.+.++.+|..|+..+...--.+-..- +.+++ .++ ..|=-
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a--------EqEEE---------~is---N~LlK 84 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA--------EQEEE---------FIS---NTLLK 84 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---------HHH---HHHHH
Confidence 44777788888888888888888888888888877776532222211 11111 011 11222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh-hhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHH
Q 000644 910 KVAELQELLDSAISEKEATGQQLAS-HMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKV 988 (1377)
Q Consensus 910 ~i~~Lqe~l~~~~~e~e~~~e~l~~-~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl 988 (1377)
+|+.|.-+-+......+.=.+.+-. .+..+.+|..+. +.+...+.. .-+..|.-|..++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK------------------~~lE~~Le~--EqE~~V~kL~k~i 144 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEK------------------VELENQLEQ--EQEYLVNKLQKKI 144 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH--hHHHHHHHHHHHH
Confidence 3444433333332222222222111 111233333333 222223333 3344566677777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHH
Q 000644 989 SVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDL 1068 (1377)
Q Consensus 989 ~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL 1068 (1377)
..|+.....|.. .+..+...--.+++. ++.|..- -+.+|.+.+..+...=.-|
T Consensus 145 ~~Le~e~~~~q~---------------------~le~Lr~EKVdlEn~---LE~EQE~---lvN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 145 ERLEKEKSAKQE---------------------ELERLRREKVDLENT---LEQEQEA---LVNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred HHHHHHHHHhHH---------------------HHHHHHHHHHhHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 777665543211 111111111112222 2222111 1345556666666666666
Q ss_pred HHHhhhccccccccHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH
Q 000644 1069 QAKLSATIVEKDETVEQLH------ASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQ 1142 (1377)
Q Consensus 1069 ~~qLs~~~~e~~rTveELq------~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~q 1142 (1377)
+.+|..+.+ ...|+.++- +.-..+.-.++.|+.++..|..++-....+...-.+.|...-+.+...--.+...
T Consensus 198 q~~l~~~~s-~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~ 276 (310)
T PF09755_consen 198 QEKLEQPVS-APPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRK 276 (310)
T ss_pred HHHHccccC-CCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666632111 223444442 1335677778889999999999998888888888788877777776666666666
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 000644 1143 LNEKKATEETFKSEIESL 1160 (1377)
Q Consensus 1143 L~~k~~i~~~~~~eI~~l 1160 (1377)
|..-.+...++.+.+...
T Consensus 277 L~~E~erreal~R~lses 294 (310)
T PF09755_consen 277 LQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555554444444433
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.20 E-value=8.6 Score=42.87 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=94.5
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000644 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1377)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1377)
-|..+...|.+++..-.+.+..+......+.+|..-+..++..+..|..+|..+ .-+..+...+......+...++.++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888877777777777888888888888888888888888887422 1122333444445555555666666
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELL 1181 (1377)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i 1181 (1377)
-+...|......+..+...|-.+|...+.++.... ... .--++..|..|...+
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~-----------~~k----------------n~lLEkKl~~l~~~l 159 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT-----------GLK----------------NLLLEKKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH----------------HHHHHHHHHHHHHHH
Confidence 66666666666666666666555555555554444 222 344566666666666
Q ss_pred HHHHHHhhhhHHHHHHhhhhHH
Q 000644 1182 VNVETQFKEEVENVKVSAAGKE 1203 (1377)
Q Consensus 1182 ~~ae~~l~e~~~~v~~~~~~~e 1203 (1377)
....+.+.+ +-.++.-.-
T Consensus 160 E~keaqL~e----vl~~~nldp 177 (201)
T PF13851_consen 160 EKKEAQLNE----VLAAANLDP 177 (201)
T ss_pred HHHHHHHHH----HHHHcCCCH
Confidence 667777777 554444333
No 106
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=30 Score=46.57 Aligned_cols=138 Identities=19% Similarity=0.187 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHH
Q 000644 375 RESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAE 454 (1377)
Q Consensus 375 ~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~E 454 (1377)
+.-...++|-.++.+...-.++..++....++...+++-...+...+.........+-+....++..+..|+.
T Consensus 215 ~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e------- 287 (1141)
T KOG0018|consen 215 KEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE------- 287 (1141)
T ss_pred HHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 3445666666677777777777766666666666666666555555544444444444444444444443332
Q ss_pred HHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 000644 455 LELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQ 520 (1377)
Q Consensus 455 l~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~ 520 (1377)
.- .+=.+.+.+...-.++..+.........-......-+++...++.++..++..+++.++.-.+
T Consensus 288 rp-~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 288 RP-ELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred hh-HHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 011223333333344444444444444444455555556666666666666666665555433
No 107
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=26 Score=45.15 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1377)
Q Consensus 705 reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1377)
.++...+.-.......++.++..|..+|...+..+.--|.+...+-.++.++.+++...
T Consensus 457 ~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~L 515 (716)
T KOG4593|consen 457 EELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELL 515 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34455555556666677888888888888777777767776666666666666655444
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.61 E-value=16 Score=43.60 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=82.5
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000644 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1377)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1377)
.-++.++..+...+..++.+...+......+...+..+.........++..+.....+ .-.--...+.....++...
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666666666666666666655555422 1112234455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhH
Q 000644 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETG 470 (1377)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he 470 (1377)
..++...+.....+...+..+...+..+.....++...+..++....+.. +--..|+..++..+.....-|+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r------~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR------GWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHC
Confidence 55555555555555555555555555555555555555555544221110 1123377777777776666555
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=27 Score=44.08 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 000644 704 ERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQ 783 (1377)
Q Consensus 704 ~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~ 783 (1377)
++.....+......+-.|+.-+..+...++|..+.+..+..++..+-++.... +.. .++.-.+-+.+ ++.
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~-k~e------~eee~~k~~~E---~e~ 496 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELK-KEE------AEEEWKKCRKE---IEK 496 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHH---HHH
Confidence 44555666666677777777788888888888877777777777666665521 100 11111222222 222
Q ss_pred HHHHHHHH----hhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHH
Q 000644 784 QTRVLEQA----TSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMY 844 (1377)
Q Consensus 784 ~~~~Le~e----~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~ 844 (1377)
++.+|-.+ ..+-.++. .+.+..|..+++.+...+..+-.+- ++|-.+=++|-++
T Consensus 497 le~~l~~l~l~~~~~m~~a~----~~v~s~e~el~~~~~~~~eer~ki~---~ql~~~i~~i~~~ 554 (581)
T KOG0995|consen 497 LEEELLNLKLVLNTSMKEAE----ELVKSIELELDRMVATGEEERQKIA---KQLFAVIDQISDF 554 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 22222222 23333333 5566677777776666665554444 6666666665554
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.42 E-value=21 Score=42.25 Aligned_cols=203 Identities=16% Similarity=0.194 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 000644 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI--------------TQLELILNQS 581 (1377)
Q Consensus 516 keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kI--------------s~LEsqLk~L 581 (1377)
+.|-.+...+..+...++.++....+.+..++-++.-....+.-+.....+-...- ..--..+..+
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 34444444555555555555555555555565555544444433332221111000 1111345577
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 582 NTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKK 661 (1377)
Q Consensus 582 qsrireLEEele~L~EeLeE~e~ra~~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK 661 (1377)
+.+++.|+++-..|+.+... +......+++.. ..=+.+.=.++.....+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~------------------L~~et~~~EekE-------------qqLv~dcv~QL~~An~q 214 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQ------------------LKTETDTYEEKE-------------QQLVLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hhHHHhhccHHH-------------HHHHHHHHHHhhhcchh
Confidence 77777777777766664444 100001111100 00011333555666677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000644 662 CEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1377)
Q Consensus 662 ~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~ 741 (1377)
+..+...++.-..+..+.+.+|..+.+.+-.+...+......-.+|...+......=..|..++.+++.+..|.-+.|..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888887777777777777777777788888777777777888888888888777777766
Q ss_pred HHHHHHHH
Q 000644 742 LRNDLNMT 749 (1377)
Q Consensus 742 LR~El~l~ 749 (1377)
-+-++..+
T Consensus 295 aQEElk~l 302 (306)
T PF04849_consen 295 AQEELKTL 302 (306)
T ss_pred HHHHHHHh
Confidence 55555443
No 111
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=40 Score=45.39 Aligned_cols=255 Identities=19% Similarity=0.249 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 682 ELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLK 761 (1377)
Q Consensus 682 ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~ 761 (1377)
+.......+..++..+.-....+..+..++......+...+.++.++.-.+.++.+.++......+.++.++..++..+=
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665566666666677777777777777777777777777666666666665555444331
Q ss_pred -----Hhccc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccc---
Q 000644 762 -----AAGLR---------ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRD--- 824 (1377)
Q Consensus 762 -----~~~~~---------eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~--- 824 (1377)
.-|++ -.++..++...+.|+-.++-.|+=++- .....=.+...+.++. ++..++..-...
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~-~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVED-LEKEIEGLKKDEEAA 833 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHH-HHHhHHhhHHHHHHH
Confidence 11111 233455566666666666666654432 1111111222222221 111111111111
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc------ccc
Q 000644 825 ----SEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN------NSS 894 (1377)
Q Consensus 825 ----~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~------~~~ 894 (1377)
++..+|-+ | -..-.-.++.++.+....+..|-.++--+--.+...++.++....++..+..... -+.
T Consensus 834 ~k~i~e~~~~e~--k-~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 834 EKIIAEIEELEK--K-NKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred HHHHhhHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhcccccccc
Confidence 11111111 1 1333455666666777777777777777778888888888888888888766411 011
Q ss_pred ch------------hhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 895 SE------------NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 895 ~~------------~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
++ -+.|-.... |.-+|.+.+..|+....|+.+. +|+.... ....+++.
T Consensus 911 ~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~~Pn~kA~-~~~d~v~--~~~~~~Ef 970 (1141)
T KOG0018|consen 911 SGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRIAPNLKAL-ERLDEVR--FQEINEEF 970 (1141)
T ss_pred CCCccccceecccccccccHHHH-HHHHHHHHHHHHHHhCcchHHH-hhhhhHH--HHHhhHHH
Confidence 11 123333443 8888888888888887777643 4554444 44455554
No 112
>PRK09039 hypothetical protein; Validated
Probab=93.28 E-value=5.9 Score=47.64 Aligned_cols=114 Identities=17% Similarity=0.253 Sum_probs=45.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD 562 (1377)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~ 562 (1377)
|.+.+.--++....+...+..+...+..++..+..|+.+...........+.....+...+...+..+.+....+.-++.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~ 144 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQ 144 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333344444444444444444554444332222333333444444444444444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000644 563 QMNDYKDKITQLELILNQSNTRSSELEEELRITK 596 (1377)
Q Consensus 563 kleelq~kIs~LEsqLk~LqsrireLEEele~L~ 596 (1377)
+|..++..+..++..|.....+.......+..+.
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333333333333333
No 113
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=26 Score=42.95 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=102.2
Q ss_pred HHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHH----------HHhhhhHHHHHHhccchHHHHHHHHHhHHHHHH
Q 000644 427 LEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLE----------EQHNETGAAAATASQRNLELEDIIRASNEAAEE 496 (1377)
Q Consensus 427 LEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~le----------e~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek 496 (1377)
+....++....|.-.++.-||+-+.++|++.++|--+ +--..-...+...+++..+|..|.+..+..+..
T Consensus 246 l~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~ 325 (521)
T KOG1937|consen 246 LQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQ 325 (521)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444555555555666666666665554322 222333456677777778888888888888877
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000644 497 AKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE--EKKQLHDQMNDYKDKITQL 574 (1377)
Q Consensus 497 ~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~--eLeele~kleelq~kIs~L 574 (1377)
-+-+|+.........-.++.. +.+++..+.....++....+-..+|.+++..+-. ....+...+-++.+-|...
T Consensus 326 kkl~Lr~~l~~~e~e~~e~~~----IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq 401 (521)
T KOG1937|consen 326 KKLQLREELKNLETEDEEIRR----IQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQ 401 (521)
T ss_pred HHHHHHHHHhcccchHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 777775544433222222333 2222223333333333333444445555544333 2456677888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 575 ELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 575 EsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
...+......-++|.-+.+++.+.+..
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888887766
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.20 E-value=27 Score=42.95 Aligned_cols=60 Identities=17% Similarity=0.394 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000644 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1377)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~ 436 (1377)
.....|......+..|+..|..++.....++.++.+....+..++....++...+.++..
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555555555544444
No 115
>PRK09039 hypothetical protein; Validated
Probab=93.05 E-value=4.7 Score=48.48 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 000644 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKL 543 (1377)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeki 543 (1377)
|+++|......+.....++..|--.+.-...+...++..+..++..+..+......+...+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~ 104 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL 104 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544444555555555555555555555555554444443
No 116
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.05 E-value=20 Score=42.75 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=89.8
Q ss_pred hchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 000644 450 ANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529 (1377)
Q Consensus 450 ~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~ 529 (1377)
+++..|..++...-+.+.....-+.+++||+.|+.+.|.-++.++-+.+.........-.. .....|=.|+..++.++
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999888887776666433332111 44555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 000644 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDK-------ITQLELILNQSNTRSSELEEELRITKERSA 600 (1377)
Q Consensus 530 ~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~k-------Is~LEsqLk~LqsrireLEEele~L~EeLe 600 (1377)
..+++++..+.+..+++..+-..+......++..++-.-.. |..|=-.-..+..|+.+++++.+.+...+.
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544443333333333222222211 333333333555555555555554444333
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.61 E-value=32 Score=42.31 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000644 699 MANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDL 746 (1377)
Q Consensus 699 e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El 746 (1377)
...+....|..-+.+-++....|+..+..-+..++++-..-..|+.++
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333344444444455555555555555555555544444444443
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=25 Score=40.83 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 000644 566 DYKDKITQLELILNQSNTRSSEL 588 (1377)
Q Consensus 566 elq~kIs~LEsqLk~LqsrireL 588 (1377)
..+..+..+...++.++..|..+
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 119
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.38 E-value=8.6 Score=48.16 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=9.9
Q ss_pred hhcCccchHHHHHHHHHHHHHH
Q 000644 1244 QRGADSQKDSEREAALKSSLEE 1265 (1377)
Q Consensus 1244 y~~~~sqL~~e~e~~lk~~~~e 1265 (1377)
|..++|.+ ..+.+.|..+...
T Consensus 270 y~~~hP~v-~~l~~qi~~l~~~ 290 (498)
T TIGR03007 270 YTDKHPDV-IATKREIAQLEEQ 290 (498)
T ss_pred hcccChHH-HHHHHHHHHHHHH
Confidence 44445555 4444444444443
No 120
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.36 E-value=17 Score=43.24 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000644 896 ENELLVETNNQLKSKVAELQELLDSAISE 924 (1377)
Q Consensus 896 ~~~~L~~~~~~le~~i~~Lqe~l~~~~~e 924 (1377)
.--+|..+||-|..+|.++|++.+-+.+.
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999887544
No 121
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.34 E-value=32 Score=41.52 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhh
Q 000644 389 VSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNE 468 (1377)
Q Consensus 389 ~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~ 468 (1377)
+..+..+|......+..++..++...+++.......+-++..++....+|.|.-+.|-+-+-....|..-++.|-+....
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555556666666666666677777664433333333333334444444444
Q ss_pred hHH
Q 000644 469 TGA 471 (1377)
Q Consensus 469 he~ 471 (1377)
-++
T Consensus 163 l~a 165 (499)
T COG4372 163 LEA 165 (499)
T ss_pred HHH
Confidence 333
No 122
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.26 E-value=39 Score=42.40 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHHHhcccchhh-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 000644 816 ALANITSRDSEA-KSFSEKLKNLEGQVKMYEEQLAEAA-GKYALLKEE----LDSYFIKVTSLESTNEELQRQVVEANNK 889 (1377)
Q Consensus 816 al~~~~~~~~Ea-~~l~k~L~~lq~qik~~q~~~~ea~-~k~~~l~~E----le~~~~~l~~~E~~~~~~e~e~~e~~~~ 889 (1377)
++-++-+.-++. .-++.-.+++++||-.+-.++--.- ++-.-+.++ +..+.-.+.+.|.++-..+.-+.
T Consensus 150 a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lr----- 224 (531)
T PF15450_consen 150 ACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLR----- 224 (531)
T ss_pred HHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444444444433 3344556777777777665543211 222223333 33333445555555555544331
Q ss_pred hccccchhhhHHHHH-HHhHHHHHHHHHHHH----HHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 890 ANNSSSENELLVETN-NQLKSKVAELQELLD----SAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 890 ~~~~~~~~~~L~~~~-~~le~~i~~Lqe~l~----~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
.++.+=+... ..++.++..|....+ ..+++.--..+++++.-..|..|+.-+
T Consensus 225 -----eElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v 281 (531)
T PF15450_consen 225 -----EELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFV 281 (531)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1222222222 234666777776666 235566667778888877887777666
No 123
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.01 E-value=19 Score=38.16 Aligned_cols=94 Identities=24% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 000644 651 LEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNE 730 (1377)
Q Consensus 651 LEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElke 730 (1377)
.......++.++.++++.+.....+...+..+.+...+.+..+...+.......++|...+..+...+..|......++.
T Consensus 15 ~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666666667777777777777777777777777888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 000644 731 KLAEAENLLELLRN 744 (1377)
Q Consensus 731 qLeElE~~Le~LR~ 744 (1377)
++.+++.......+
T Consensus 95 kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 95 KVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHhHHHHH
Confidence 88888777665444
No 124
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.87 E-value=43 Score=42.04 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHH
Q 000644 407 EAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDI 486 (1377)
Q Consensus 407 E~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~q 486 (1377)
..++.-|...+.++.+.+..|...+..-+.++..-+. .++.+=+-|..+ |-..-...++++.++.++..+=+.-
T Consensus 91 ~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~q---e~~~rl~~L~~~---Lrqee~~re~a~~aL~k~qe~~~~k 164 (531)
T PF15450_consen 91 QNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQ---EAGLRLSKLQDM---LRQEEQGREDACSALQKSQEEDSQK 164 (531)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHH---HHHHHHhHHHHHHHHHhcchhhHHh
Confidence 4445556666666666666666666666666655554 223333333333 3444445677888888887665555
Q ss_pred HHH----hHHHHHHHHHHH------------hhhhhhHHHHHHHHHH
Q 000644 487 IRA----SNEAAEEAKSQL------------RELEPRFIAAEQRSVE 517 (1377)
Q Consensus 487 i~~----~~~~~Ek~k~~l------------~~l~~~~~~~Ekk~ke 517 (1377)
++. +.+.+-+....+ ..|++.|.+.++..+.
T Consensus 165 ~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka 211 (531)
T PF15450_consen 165 VDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKA 211 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 555554444444 4555556665555554
No 125
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.79 E-value=48 Score=42.41 Aligned_cols=239 Identities=21% Similarity=0.270 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000644 339 EISALDNLLADAKENLHAKVSELEDIKLKLQEEVNA--RESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416 (1377)
Q Consensus 339 ~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~--~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~ 416 (1377)
|..++++.+..--..|.........-..++-++... +..-..++..-+.-+.-.+.+++.+-..-...+...=+.-..
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~ 95 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEK 95 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444444444444222222 222344555566777788899999999999999999999999
Q ss_pred HHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhh------HHHHHHhccchHHHHHHHHH-
Q 000644 417 IARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNET------GAAAATASQRNLELEDIIRA- 489 (1377)
Q Consensus 417 i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~h------e~~~~~~~qk~~EL~~qi~~- 489 (1377)
+.+.+++.--|.........-. + -..|...+++.+++...+- ...+..+.++..+++.++..
T Consensus 96 L~eaPDP~pll~sa~~~l~k~~-~----------~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ 164 (629)
T KOG0963|consen 96 LIEAPDPVPLLASAAELLNKQQ-K----------ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIF 164 (629)
T ss_pred HhhCCCCchHHHHHHHHhhhhh-h----------hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 9999998766554332211100 0 1235555555555544332 22445555555555555444
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000644 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQ----MN 565 (1377)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~k----le 565 (1377)
.+..+.-....+ +. ..-.....+...-.....++..++.++..++..+.....++..+..+ +.
T Consensus 165 ie~~a~~~e~~~---~q----------~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~ 231 (629)
T KOG0963|consen 165 IENAANETEEKL---EQ----------EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVA 231 (629)
T ss_pred HHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Confidence 111111111100 00 00111111222222222333334444444444444444444444444 44
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 566 DYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 566 elq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
-....|+-+-..+...+.++.+|+.++..+..++..
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555566667777788888877777777666
No 126
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.51 E-value=34 Score=40.18 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHh
Q 000644 548 TALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRA 606 (1377)
Q Consensus 548 ~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra 606 (1377)
..+......+.++..-....+.+++.+-..-..+..|+.+++.+---|+.+++....+.
T Consensus 186 rdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~ 244 (305)
T PF14915_consen 186 RDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKA 244 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444455555555555666666666666666666666633333
No 127
>PRK11281 hypothetical protein; Provisional
Probab=91.50 E-value=75 Score=44.08 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhh-hhhHHHhh
Q 000644 905 NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFT-QRDIEANN 983 (1377)
Q Consensus 905 ~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~-~~e~~~ke 983 (1377)
..|++++.+++..|.+.+...-..+.++....+.-++-.+.++ .+-.|..++..++.-..-..+ --+.+..-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls-------ea~~RlqeI~~~L~~~~~~~~~l~~~~~~~ 196 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY-------ANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCCcCCHHHHHH
Confidence 4488888888888888888888888887777777776666662 233344555544422110000 11233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhh
Q 000644 984 LNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTR 1036 (1377)
Q Consensus 984 L~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~ 1036 (1377)
|++.+..++.++..+.-....+..--+--....+....++..++..+..|++.
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~ 249 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA 249 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655443333332222222223333333444444444444433
No 128
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.47 E-value=32 Score=39.76 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhh
Q 000644 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGH 1039 (1377)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~ 1039 (1377)
......+......+..+...+..++..+..+.++++.+++.++......+.+......+...|..+...+..
T Consensus 34 ~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 34 RSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555677777788888888888888999888888888877788777777777777777665433
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.95 E-value=29 Score=38.40 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1377)
Q Consensus 529 ~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~L 581 (1377)
...+.+++-.|+.-+..-...+.+..+.+.++..-+.+|......|...+..+
T Consensus 132 ~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 132 KATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRL 184 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443333333
No 130
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.64 E-value=64 Score=41.81 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=64.3
Q ss_pred hHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 000644 806 MRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQ 882 (1377)
Q Consensus 806 ~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e 882 (1377)
......++++ ..-+.+-..+-.+.|++.|+.++.-+..|--+..++-+.+...+.-..++...+.+.-+.+++++.=
T Consensus 362 ~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~l 441 (716)
T KOG4593|consen 362 LERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGL 441 (716)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHH
Confidence 4466667777 5666777788889999999999999999999999999888888888888888888877777777654
Q ss_pred HHH
Q 000644 883 VVE 885 (1377)
Q Consensus 883 ~~e 885 (1377)
+..
T Consensus 442 V~~ 444 (716)
T KOG4593|consen 442 VQK 444 (716)
T ss_pred HHH
Confidence 333
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.53 E-value=26 Score=37.10 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 000644 676 VCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENL 738 (1377)
Q Consensus 676 l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~ 738 (1377)
+..+..+++.+....+.++..|...+....+|...+...+..+..|+.-..++...|.+++..
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444555555555444444443
No 132
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.20 E-value=56 Score=40.43 Aligned_cols=82 Identities=18% Similarity=0.370 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000644 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKF 1168 (1377)
Q Consensus 1089 ~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~ 1168 (1377)
.++.+=|-|.+|+..|..|-.+++...=+.|-+ .+..+.|...+.+..+.|.+..+- +.
T Consensus 356 kQqvfvDiinkLk~niEeLIedKY~viLEKnd~----~k~lqnLqe~la~tqk~LqEsr~e-----------------Ke 414 (527)
T PF15066_consen 356 KQQVFVDIINKLKENIEELIEDKYRVILEKNDI----EKTLQNLQEALANTQKHLQESRNE-----------------KE 414 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHhh-----------------HH
Confidence 455677889999999999999999999999999 888888888888888888775333 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 000644 1169 ALETRIKELEELLVNVETQFKEE 1191 (1377)
Q Consensus 1169 ~le~~ie~L~~~i~~ae~~l~e~ 1191 (1377)
.++.++..+.......+.+|..+
T Consensus 415 tLqlelkK~k~nyv~LQEry~~e 437 (527)
T PF15066_consen 415 TLQLELKKIKANYVHLQERYMTE 437 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666655555555555553
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.06 E-value=2.6 Score=46.43 Aligned_cols=112 Identities=29% Similarity=0.343 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1377)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~ 569 (1377)
+...+-+....|.++...+..+-++...+...+..+..++....+.+..+...+..+...+..+...+......+..++.
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666667777777777777777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.+..|..+.+.+..+++.|+.+-..|-++.-.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877766554433
No 134
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.08 E-value=49 Score=38.21 Aligned_cols=67 Identities=27% Similarity=0.369 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000644 667 AGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1377)
Q Consensus 667 qel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le 740 (1377)
..+..+..++.+++.-+..+...++..+......+..+.++ ...+..+..........|.+.++.|.
T Consensus 185 ~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~-------~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 185 DDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDL-------EKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333333333 33333444444444444444444443
No 135
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.90 E-value=76 Score=40.11 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhh------HHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHH
Q 000644 771 MEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESE------MKLQDALANITSRDSEAKSFSEKLKNLEGQVKMY 844 (1377)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E------~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~ 844 (1377)
...++++...+.+.-..++.-+-.=+.++.-.++..+-++ .++++.|-.+-+-+.+|. ..|..+...+-..
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Ar---e~l~~~~~~l~ei 429 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAR---ENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334444444444333333334444444433333333222 334445555555566666 6666666666555
Q ss_pred HHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhH
Q 000644 845 EEQLAE----------------AAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLK 908 (1377)
Q Consensus 845 q~~~~e----------------a~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le 908 (1377)
-|-+.- +.-....+-.+|.+...-+.+.-+-.+.+......+.+++.+. -+|.-|++...+|.
T Consensus 430 kR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~-ve~a~LaE~lIQY~ 508 (570)
T COG4477 430 KRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV-VENAVLAEQLIQYG 508 (570)
T ss_pred HHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 544433 3355566667777777777777777777777777766655444 47888888888887
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 000644 909 SKVAELQELLDSAISEKEAT 928 (1377)
Q Consensus 909 ~~i~~Lqe~l~~~~~e~e~~ 928 (1377)
.+-.--...+....++.+..
T Consensus 509 NRYRs~~~~v~~~l~eAe~l 528 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAERL 528 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 77755555555555544443
No 136
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.51 E-value=83 Score=40.06 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=110.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhh
Q 000644 897 NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQ 976 (1377)
Q Consensus 897 ~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~ 976 (1377)
..+..+..+.|..++..|...+.....+...+.-.+.+...-.+-....|.. +.. .......-.+....
T Consensus 150 ~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~----------~~~-A~~~~~~~l~~~~e 218 (511)
T PF09787_consen 150 SRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEE----------RPK-ALRHYIEYLRESGE 218 (511)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHHHH
Confidence 3444566689999999999999988888888877776666665544444411 111 22333444444334
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhh--------------hhhHh
Q 000644 977 RDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRS--------------GHFER 1042 (1377)
Q Consensus 977 ~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~--------------~~lEs 1042 (1377)
+...+.=++.-+...+.....|..-|+- -+..-+..|..|+... ..+-.
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~-----------------iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~ 281 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQR-----------------ILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQ 281 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------HhcCHHHHHHHHHhcccccccccccchhcchhhHH
Confidence 4444444555555556666666544333 4445555556555511 11222
Q ss_pred hhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHh
Q 000644 1043 ESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL---TSEVQGLQTQISAIMEENN 1119 (1377)
Q Consensus 1043 Elr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkL---r~~i~~L~~qke~aeeE~~ 1119 (1377)
|..-.-+.+..|...|..+..++.+...++. .. ++-.+.....+...+.-. ..++..+...++...++..
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLE-----GE--QESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 2233334555555666666666666666643 11 122222222222222222 3445555555555555555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 000644 1120 SLNETYQNAKNELQSVISQLEAQLNEK 1146 (1377)
Q Consensus 1120 ~L~~~~e~~~kEl~~~i~~le~qL~~k 1146 (1377)
+........+.+....|..+..+|..+
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSAR 381 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 553333444444444444444444333
No 137
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.34 E-value=48 Score=37.11 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000644 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---ERELTESLNAAADEKRKLQDTSN 726 (1377)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek---~reL~eql~elek~k~~LE~Eie 726 (1377)
.+...+..+.++....++.+......-.++...+..+..++..+...+...... +..+...+..+++.+..|.-+.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555544443333222 22333444444555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000644 727 GYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA-AGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1377)
Q Consensus 727 ElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~-~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~ 795 (1377)
-+..++..++..-+.|...+ ...=.+++- .|++.--++.|+..+..+++..++.|...-+..
T Consensus 111 vL~qr~~kle~ErdeL~~kf-------~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKF-------ESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555554444444433 332222222 234455566777777777777777776665443
No 138
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.33 E-value=42 Score=36.46 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000644 338 EEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNI 417 (1377)
Q Consensus 338 e~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i 417 (1377)
.|+.-++..-..|...|+.+..+|..+...+---.-..+-...++......+..+..+|.........+.+.+..+....
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788888888888888888886666777777888888888888888888888888888888888877777
Q ss_pred HHhHhhhHHHHHHHhhhHh-----hhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHH
Q 000644 418 ARMKELCSELEEKLRNSDE-----NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAA 473 (1377)
Q Consensus 418 ~eL~e~~eeLEeeL~~~~~-----e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~ 473 (1377)
..+.....+|....+-... +|-++-. ++..+++++..+...|+..-
T Consensus 122 ~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~----------~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 122 DKLRKQNKKLRQQGGLLGVPALLRDYDKTKE----------EVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666665543 4666655 88888888887777776443
No 139
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.25 E-value=50 Score=37.22 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000644 585 SSELEEELRITKE 597 (1377)
Q Consensus 585 ireLEEele~L~E 597 (1377)
+..+..+.+.+..
T Consensus 71 i~~~~~erdq~~~ 83 (207)
T PF05010_consen 71 IQKLLKERDQAYA 83 (207)
T ss_pred HHHHHhhHHHHHH
Confidence 3333333333333
No 140
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=88.18 E-value=61 Score=38.18 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000644 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1377)
Q Consensus 380 ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLe 414 (1377)
..++....++..|..+..-+..+...-.....+|+
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLE 90 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLE 90 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHH
Confidence 34444444444444444444443333333333333
No 141
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.11 E-value=1.1e+02 Score=40.92 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=75.1
Q ss_pred hHHHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHHhH----------HHHHHHHHHHhhhhhhHHHHHHHHHHHH--
Q 000644 452 NAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASN----------EAAEEAKSQLRELEPRFIAAEQRSVELE-- 519 (1377)
Q Consensus 452 ~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~----------~~~Ek~k~~l~~l~~~~~~~Ekk~keLE-- 519 (1377)
+.|....+|+.+..+..|= +--+|+.-|+.-++-++ |++-+.|..+..+.........++--.-
T Consensus 168 ~~E~~~~~~~ae~a~kqhl----e~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~ 243 (769)
T PF05911_consen 168 NEEREYSRRAAEAASKQHL----ESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPS 243 (769)
T ss_pred HHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCccc
Confidence 3455556667777666664 34466777888777733 6667777777666333222222111100
Q ss_pred -------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 520 -------QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1377)
Q Consensus 520 -------~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqL 578 (1377)
............+..++-.+++...-|+.-|.....+|......+.....+++.++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 244 SPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233344555666667777777788888888888887777777788888888888
No 142
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.82 E-value=37 Score=35.28 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000644 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1377)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1377)
+....+.+..+.+.+..+..-+++...+..-|+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777766666555
No 143
>PLN02939 transferase, transferring glycosyl groups
Probab=87.58 E-value=59 Score=44.14 Aligned_cols=221 Identities=22% Similarity=0.241 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHH
Q 000644 835 KNLEGQVKMYEEQLAEAAGKYAL----------LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETN 904 (1377)
Q Consensus 835 ~~lq~qik~~q~~~~ea~~k~~~----------l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~ 904 (1377)
-.||++|..++-.+.++-.+.+. ++..++-++..|.+-.-.-. .=...++-+-..|-++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 235 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEG----------LCVHSLSKELDVLKEEN 235 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccc----------cccccHHHHHHHHHHHh
Confidence 36778888888888776544432 22333333222221100000 00112344556677788
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhH
Q 000644 905 NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNL 984 (1377)
Q Consensus 905 ~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL 984 (1377)
.-|+.+|.-|-.+|.+. -.+.+++. ..+.-+. -++..+++|
T Consensus 236 ~~~~~~~~~~~~~~~~~----~~~~~~~~---------------------------------~~~~~~~--~~~~~~~~~ 276 (977)
T PLN02939 236 MLLKDDIQFLKAELIEV----AETEERVF---------------------------------KLEKERS--LLDASLREL 276 (977)
T ss_pred HHHHHHHHHHHHHHHHH----HhhhHHHH---------------------------------HHHHHHH--HHHHHHHHH
Confidence 88888888777776653 22222222 2333444 566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhh
Q 000644 985 NEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETK 1064 (1377)
Q Consensus 985 ~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~q 1064 (1377)
-.|+......+.+ -... +++.+=.+|+.|+.- ++. ....++..+-.-..-.++..+
T Consensus 277 ~~~~~~~~~~~~~-----------~~~~---------~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (977)
T PLN02939 277 ESKFIVAQEDVSK-----------LSPL---------QYDCWWEKVENLQDL---LDR-ATNQVEKAALVLDQNQDLRDK 332 (977)
T ss_pred HHHHHhhhhhhhh-----------ccch---------hHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhccchHHHHH
Confidence 7777555444433 0111 233344455555544 333 334444444444555667777
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 000644 1065 LSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLE 1140 (1377)
Q Consensus 1065 lkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le 1140 (1377)
|+.|..-|..|.+..-+ ...++.++.+++.+..-....-.+++.--.-|...+.+.++.++++.
T Consensus 333 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 333 VDKLEASLKEANVSKFS------------SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHHHHHhhHhhhh------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776422222222 12345555556666655555555666555666666666666665443
No 144
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.38 E-value=1e+02 Score=41.04 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1148 ATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKE 1190 (1377)
Q Consensus 1148 ~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e 1190 (1377)
....++..++..++..+........++..|++....++.-|..
T Consensus 352 ~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 352 ARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556888888888888888888999999999999999998
No 145
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=96 Score=39.17 Aligned_cols=126 Identities=19% Similarity=0.146 Sum_probs=97.5
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000644 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEP-RFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVE 554 (1377)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~-~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE 554 (1377)
+.|+..||+...|..+.-++..+..+-...+ -+.........=+.-+++--.|-....+.|.++...+.+++.++.++.
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455588888999999999988888844333 244445555555667777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 555 EEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 555 ~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.++..+.....++...-..++.+.-.+...++...-.-..+.....+
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE 174 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE 174 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888777777777777666666665555
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.77 E-value=43 Score=34.85 Aligned_cols=123 Identities=14% Similarity=0.286 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000644 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAA 1165 (1377)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~ 1165 (1377)
++..+..+...+......+..++.++..-....+....+|+ +.|....... ..|..+|..
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE--------------~El~~Ha~~~----~~L~~lr~e-- 67 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE--------------RELVKHAEDI----KELQQLREE-- 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHH----HHHHHHHHH--
Confidence 34444444444444444455555444444444444444444 3333333333 455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000644 1166 EKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAE 1243 (1377)
Q Consensus 1166 e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~ 1243 (1377)
...+...|..|......+...|.. ....+......+...+ +.+...+..|..+=..+++.|..
T Consensus 68 -~~~~~~~~~~l~~~~~~a~~~l~~----~e~sw~~qk~~le~e~----------~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 68 -LQELQQEINELKAEAESAKAELEE----SEASWEEQKEQLEKEL----------SELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566777777777778888877 7777777777777777 66777775555555555555543
No 147
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.76 E-value=60 Score=36.58 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000644 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1377)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElk 729 (1377)
.++...+.+-++.......+..|..+-..++..+..+...+...+..+..+... - . ..|+..+.++.
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h-------A---e---ekL~~ANeei~ 153 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH-------A---E---EKLEKANEEIA 153 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---H---HHHHHHHHHHH
Confidence 444444444444444444444444444444444443333333333322222221 1 1 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 730 EKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1377)
Q Consensus 730 eqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1377)
.--......+.+|++.+...++++.+++..|..+
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555567776666677766665554444
No 148
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.56 E-value=81 Score=38.93 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 000644 1358 FIIGVALVSVIIGI 1371 (1377)
Q Consensus 1358 ~~~~va~~s~~~~~ 1371 (1377)
++++.+++++++||
T Consensus 399 ~l~~~~~~Gl~lg~ 412 (444)
T TIGR03017 399 NLVLSIFLGMLLGI 412 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555555
No 149
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.88 E-value=1.1e+02 Score=38.87 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=14.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Q 000644 899 LLVETNNQLKSKVAELQELLDSAISEKEA 927 (1377)
Q Consensus 899 ~L~~~~~~le~~i~~Lqe~l~~~~~e~e~ 927 (1377)
.|..+...+..+++++..++.......+.
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~ 134 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEE 134 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444333
No 150
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.86 E-value=23 Score=40.77 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHH
Q 000644 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1377)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~ 909 (1377)
|-.+|..++.+++..+..+.++..++..|..++-.....-.-++..+.+++.....+.........+...|....+.+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33888888888888888888888888777777777766666666666666666666665555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh
Q 000644 910 KVAELQELLDSAISEKEATGQQLAS 934 (1377)
Q Consensus 910 ~i~~Lqe~l~~~~~e~e~~~e~l~~ 934 (1377)
.|..|.+....--.+...+-.++..
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444444333333
No 151
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.85 E-value=1e+02 Score=38.33 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHH
Q 000644 1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVI 1136 (1377)
Q Consensus 1077 ~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i 1136 (1377)
.+-.+|+.-||.........+...+.+-..|+-+.......+-.|...|...+.+.+--+
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv 445 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV 445 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Confidence 344555666666666677777788888888888888888888888888888887776665
No 152
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=85.70 E-value=73 Score=36.53 Aligned_cols=175 Identities=16% Similarity=0.276 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhccc-chhhhhHHHHHHHHHHHHHHHH
Q 000644 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSR-DSEAKSFSEKLKNLEGQVKMYE 845 (1377)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~-~~Ea~~l~k~L~~lq~qik~~q 845 (1377)
-..-+.+......+|..++..|+.+.++|.+.. ..+....|.+++.-.+.+... ..=...+...+..|..-+..+.
T Consensus 29 r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788889999999999999999999988 344556666665522222111 1112233466666666666666
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHH
Q 000644 846 EQLAEAA--------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL 917 (1377)
Q Consensus 846 ~~~~ea~--------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~ 917 (1377)
..+.+.+ ....++..++..|...+..=-..|.+-+..+..--... ...-...+-.++..-++.+..|-..
T Consensus 106 ~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~--~~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 106 EEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEE--ENRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554 44456777788777777665555655555555433332 2233455667788888888899999
Q ss_pred HHHHhhhHHHHHHHHHh-hhccHHHHHHHH
Q 000644 918 LDSAISEKEATGQQLAS-HMNTVTELTEQH 946 (1377)
Q Consensus 918 l~~~~~e~e~~~e~l~~-~~~~~~~L~~~l 946 (1377)
++.........++.|+. ...-+..|...|
T Consensus 184 le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 184 LEEVKRRREKGDEQFQNFVLEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888777788888877 334466666666
No 153
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.53 E-value=1.1e+02 Score=38.20 Aligned_cols=147 Identities=15% Similarity=0.241 Sum_probs=110.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000644 665 AEAGSKQYSDKVCELASELEAFQ---ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1377)
Q Consensus 665 ~eqel~el~~~l~kLk~ELE~~e---ke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~ 741 (1377)
|.+....+-.++..++.+.+.+- .++..+...++.++.+.+.|++..+.+......+.....++-..++.+...+..
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34444444455555555555444 445556667888888889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHH---HHHHHHHHHHHHHHHHHHHh----hhhhhhhhhHHHhhHhhhHHHH
Q 000644 742 LRNDLNMTQERLESIEKDLKAAGLRETDVME---KLKSAEEQLEQQTRVLEQAT----SRNSELESLHESLMRESEMKLQ 814 (1377)
Q Consensus 742 LR~El~l~q~k~eslE~~l~~~~~~eee~~~---k~k~~~~~l~~~~~~Le~e~----~~~~e~~~~~e~~~kk~E~~L~ 814 (1377)
.--++..++++.+.+...+...|+.-++|+. -|-.+-+.|+-+.-..+..+ ++..+++ ..-+.+|-.++
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq----~~~~slek~~~ 417 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ----GIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Confidence 8889999999999999999999999988863 46667777777777777776 4555566 66666666665
Q ss_pred H
Q 000644 815 D 815 (1377)
Q Consensus 815 e 815 (1377)
.
T Consensus 418 ~ 418 (622)
T COG5185 418 Q 418 (622)
T ss_pred H
Confidence 5
No 154
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.85 E-value=96 Score=37.14 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000644 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1377)
Q Consensus 685 ~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~L 739 (1377)
.+..++......+...+..+.++..++..+...+..+..++.++..++.+++..+
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334434444444444444444444444444444444444444433
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.70 E-value=6.4 Score=43.47 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 689 RTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1377)
Q Consensus 689 e~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1377)
.+..++..+......+..|...+..+...+..++.++.+....++.+.+.+..++.+++++..++..++.+....
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444455555555666666666666666666677777777777777766666554444
No 156
>PRK11281 hypothetical protein; Provisional
Probab=84.63 E-value=1.9e+02 Score=40.38 Aligned_cols=54 Identities=13% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQM 564 (1377)
Q Consensus 511 ~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kl 564 (1377)
.+.+...++.+++..+..+.+.+.++..+.....+.++.+.+....+.+....+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555444444444444333
No 157
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.61 E-value=25 Score=36.24 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000644 1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1377)
Q Consensus 1077 ~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1377)
+.+...|+-+++.+.++...+-.++.++..|..+++.+..++-.|
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888888888888887
No 158
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.99 E-value=1e+02 Score=36.74 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 696 ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1377)
Q Consensus 696 ~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~ 762 (1377)
.....+..+..|..++-+++...+.+-.+.+++...|...-..-..|..++.-++.+-...-+=|++
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666677777777777777777777777776666666666666666655544443333
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.90 E-value=1.3e+02 Score=38.75 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000644 1228 IQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1294 (1377)
Q Consensus 1228 ~~~~~el~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~ 1294 (1377)
.+++.++..++.-..-|...+..+ ......++.-...+......+..+..++..+.+++.......
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l-~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEV-LEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777766665455555 333333333333344444455555555555555555444333
No 160
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.88 E-value=1.7e+02 Score=39.20 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 712 NAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDL 760 (1377)
Q Consensus 712 ~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l 760 (1377)
+-+...+..++.++.-+++.|....+.|+..|+-|--+.+++..+|+.+
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999999999999999999999999999988
No 161
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.74 E-value=1e+02 Score=41.00 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhh-----HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAG-----KEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1377)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~-----~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1377)
+.=++.++..+..++..++..+.. ++.++.- .....-..+ ..+..++.+++.+. ..+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~----fr~~~~~~d~~~ea~~~l~~~----------~~l~~ql~~l~~~~----~~l 330 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNV----YRQQRDSVDLNLEAKAVLEQI----------VNVDNQLNELTFRE----AEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCCHHHHHHHHHH----------HHHHHHHHHHHHHH----HHH
Confidence 666777777777777778877777 6665421 111111222 33444443333222 222
Q ss_pred H-HhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 000644 1242 A-EQRGADSQKDSEREAALKSSLEELGAKNKEAAL---LQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1242 ~-~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~---l~~eIn~leqkL~dSd~~~~ 1295 (1377)
. .|..+++.. ..+...+..+..++..++..+.. .+.++..|+....-....|.
T Consensus 331 ~~~~~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~ 387 (726)
T PRK09841 331 SQLYKKDHPTY-RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYL 387 (726)
T ss_pred HHHhcccCchH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 357777777 67777666666666666555443 34445555555555555554
No 162
>PRK11519 tyrosine kinase; Provisional
Probab=82.68 E-value=1e+02 Score=40.94 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhH-----HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGK-----EAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1377)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~-----e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1377)
..=++.++..+..++..++..+.. ++..+..- ....-+.+ ..+...+.+++.++..+..
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~----fr~~~~~vd~~~ea~~~l~~~----------~~l~~ql~~l~~~~~~l~~-- 332 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNA----FRQDKDSVDLPLEAKAVLDSM----------VNIDAQLNELTFKEAEISK-- 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--
Confidence 566677777777777777777777 65544321 11111112 2333444333333333322
Q ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Q 000644 1242 AEQRGADSQKDSEREAALKSSLEELGAKNKEAAL---LQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1242 ~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~---l~~eIn~leqkL~dSd~~~~ 1295 (1377)
.|...++.. ....+.+..+..++..++..+.. .+.++..|+....-....|.
T Consensus 333 -~y~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~ 387 (719)
T PRK11519 333 -LYTKEHPAY-RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYM 387 (719)
T ss_pred -HhcccCcHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777 66666666666666666655544 34455556666555555554
No 163
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.40 E-value=1.9e+02 Score=38.60 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 000644 513 QRSVELEQQLNLVELKSSDSEREVREF 539 (1377)
Q Consensus 513 kk~keLE~Ql~elq~K~~e~erei~eL 539 (1377)
....-|..|+..+..++..++..+..|
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.11 E-value=39 Score=41.60 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=73.7
Q ss_pred cchHHHHH-HHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 478 QRNLELED-IIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1377)
Q Consensus 478 qk~~EL~~-qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~e 556 (1377)
+.+.+++. |+++.++..+......++|.....+.+...+-++..+..++.|+.....+.....+--..+.....-+...
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44455656 88889999999988888888888888888888888888888888877777766665544454444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 557 KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 557 Leele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
+..++ ..+...+......+..|++.+..|.-.++-
T Consensus 419 l~~~~----------e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 419 LKELE----------EREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 44433 223333334444455555555544444433
No 165
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=81.57 E-value=90 Score=34.40 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhH
Q 000644 829 SFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLK 908 (1377)
Q Consensus 829 ~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le 908 (1377)
+|.-+|...++.-.-++.+++-.++-+.+.+.|-...++.-..+++.+-.-..++--=.+++.-+..+-..|+.+-.--+
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae 140 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAE 140 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477777777777777777777777777666666666666665555322222222222344455667888888888889
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 000644 909 SKVAELQELLDSAISEKEATGQQL 932 (1377)
Q Consensus 909 ~~i~~Lqe~l~~~~~e~e~~~e~l 932 (1377)
.+|..|+++|-+..-....+-+++
T Consensus 141 ~Ki~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 141 TKIKELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887777777764
No 166
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.56 E-value=1e+02 Score=35.15 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=117.5
Q ss_pred HHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000644 309 EQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQ 388 (1377)
Q Consensus 309 ekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae 388 (1377)
+..+.-+..-+-++..++..+++.+..+......+++.+.++.....+++..-.......++..+ ..+...+..+...
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~ 100 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDL 100 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHH
Confidence 44445666677789999999999999999999999999999999999999988888887765443 3345555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhh--hhchHHHHHHHhhHHHHh
Q 000644 389 VSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQA--LANNAELELKLKSLEEQH 466 (1377)
Q Consensus 389 ~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~--~~~~~El~~~~k~lee~~ 466 (1377)
+..+...+.........+...+..|...|.+++....-|.-.......-.+=..+ ++-+ ++.-+.|+ .+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~-~~~~s~~sa~~~fe----r~e~ki 175 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRS-LGGGSSSSAMAAFE----RMEEKI 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhHHHHH----HHHHHH
Confidence 6666666667777777777777777766666666655554444333331111111 1111 23333444 444444
Q ss_pred hhhHHHHHHhc----cchHHHHHHHHH------hHHHHHHHHHHH
Q 000644 467 NETGAAAATAS----QRNLELEDIIRA------SNEAAEEAKSQL 501 (1377)
Q Consensus 467 ~~he~~~~~~~----qk~~EL~~qi~~------~~~~~Ek~k~~l 501 (1377)
.+-++++..+- -.+..|..++.+ ++..+...|..+
T Consensus 176 ee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~ 220 (225)
T COG1842 176 EEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARM 220 (225)
T ss_pred HHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhh
Confidence 55555554444 344666666666 455555555443
No 167
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.47 E-value=1.3e+02 Score=36.09 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=61.9
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000644 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1377)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1377)
.-++.|+..+...+..++.+...+..+...+...+-.+.........++..+....++ ...+ -...+..+..++..+
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e-~~~~--d~~eL~~lk~~l~~~ 216 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE-LEDC--DPTELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhC--CHHHHHHHHHHHHHH
Confidence 4455555555566666666555555555555555555555555555555554444322 1100 122333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000644 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1377)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~ 436 (1377)
..++...+.....+..++..+...|........++...+..++.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555544
No 168
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.21 E-value=1.3e+02 Score=36.18 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhh-----HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAG-----KEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1377)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~-----~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1377)
..-++.++..+..++..|+..+.+ ++..+.. ........+ ..|...+.+++.++..+
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~----fr~~~~~~d~~~~~~~~~~~i----------~~L~~~l~~~~~~l~~l---- 233 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLK----YQIKNKVFDPKAQSSAQLSLI----------STLEGELIRVQAQLAQL---- 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCcChHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----
Confidence 667778888888888888888888 6665522 111222233 44444443444444332
Q ss_pred HHh-hcCccchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhh
Q 000644 1242 AEQ-RGADSQKDSEREAALKSSLEELGAKNKEA--------ALLQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1242 ~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei--------~~l~~eIn~leqkL~dSd~~~~ 1295 (1377)
..| ...+|.. ..+...+..+...|......+ .....+...|...+.-+...|.
T Consensus 234 ~~~~~~~~P~v-~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 234 RSITPEQNPQV-PSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HhhCCCCCCch-HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234 5657888 788888888888887766655 3334555666666666666665
No 169
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.09 E-value=1.1e+02 Score=35.11 Aligned_cols=148 Identities=25% Similarity=0.313 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 000644 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKN-LEGQVKMYEEQLAE 850 (1377)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~-lq~qik~~q~~~~e 850 (1377)
.|+......+......++.+...|-...+--=...+.....|...|..-++.+.|+. ++|.. ++.+|..++..+..
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~ 81 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVEN 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777776666555544445566777788889999999999888 66654 56667777755544
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 000644 851 AA-GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATG 929 (1377)
Q Consensus 851 a~-~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~ 929 (1377)
-- .+...+..=+.-+..++.+++....+-..++...-+ .-...|..+|.+|.+-|+..-.....-.
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie-------------~~~~~l~~~l~~l~~~~~~Er~~R~erE 148 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIE-------------ELNQELVRELNELQEAFENERNEREERE 148 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 556666666666666666666666655555444332 4456778889999999988877776665
Q ss_pred HHHHhh
Q 000644 930 QQLASH 935 (1377)
Q Consensus 930 e~l~~~ 935 (1377)
..+.+-
T Consensus 149 ~~i~kr 154 (247)
T PF06705_consen 149 ENILKR 154 (247)
T ss_pred HHHHHH
Confidence 555443
No 170
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.90 E-value=16 Score=36.78 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 000644 863 DSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASH 935 (1377)
Q Consensus 863 e~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~ 935 (1377)
.++...|+.+++.++..+.-.+++...--.+.+-+..|.+++.....+|.+|+.+++++..+.+. +++.+.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~ 82 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKL 82 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34555666666666666666666666555666677778888888888888888888888877765 454443
No 171
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.76 E-value=1.5e+02 Score=36.40 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=13.5
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 000644 980 EANNLNEKVSVLEGQIKS 997 (1377)
Q Consensus 980 ~~keL~~kl~~~e~~~~~ 997 (1377)
.+-+|-.||..||..++.
T Consensus 210 ~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 210 RAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 366777788888888776
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.37 E-value=1.5e+02 Score=36.05 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000644 566 DYKDKITQLELILNQSNTRSSELEEELRI 594 (1377)
Q Consensus 566 elq~kIs~LEsqLk~LqsrireLEEele~ 594 (1377)
.|...+..++.++..+..++..++..+..
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~ 169 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQA 169 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 173
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.29 E-value=1.1e+02 Score=34.57 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=93.4
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000644 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1377)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1377)
.-+..+.-+|+.+|...++.+..+.-....+++.+.++...+..+.........+.+|.++...- .........+..+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al--~~k~~~~~~~~~l 104 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL--IEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHH
Confidence 45666777789999999999999999999999999999999999999998888888776655433 2555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000644 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1377)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~ 436 (1377)
...+..+......+...+.+|...+..+......|--....+..
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666655544544443
No 174
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=1.8e+02 Score=36.98 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 505 EPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1377)
Q Consensus 505 ~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~L 581 (1377)
.-....+++.++.|-..++.++....+......+|.+..+.|.+.+......+..+.--++.-...+..++.++...
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678888888889999999888888999999999999999999999999999988888888888888888743
No 175
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=80.07 E-value=1.4e+02 Score=35.59 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000644 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1377)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElk 729 (1377)
.+.++.+-.-.+...|...+..-..-...++.+++..++.|..+++.--.-+.+-.+-+..+-++...+.-....+.-++
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq 298 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQ 298 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666667778888888888888888888888888888888874444555555555556566666666777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 730 EKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1377)
Q Consensus 730 eqLeElE~~Le~LR~El~l~q~k~eslE~~l~~ 762 (1377)
.+|..++....+|+.+-+.+--++..++..+.+
T Consensus 299 ~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 299 KKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 888888888888888777777777766664444
No 176
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=80.02 E-value=2.7e+02 Score=38.93 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.2
Q ss_pred HHhccchHHHHHHHH
Q 000644 474 ATASQRNLELEDIIR 488 (1377)
Q Consensus 474 ~~~~qk~~EL~~qi~ 488 (1377)
.+++++..+...++.
T Consensus 147 ~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 147 TEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555544444443
No 177
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.65 E-value=1.1e+02 Score=34.34 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=85.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 324 QELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEK 403 (1377)
Q Consensus 324 ~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~k 403 (1377)
-+|-++|..+.+.+.++.-=...|-.|+.++......+......+ ..+...+..-...+....++|.......
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~-------~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQI-------QELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 356666666666665555444444444444444444333333333 3333333444444444444444444444
Q ss_pred HHHHHHHHHhHhhHHHhHhhhHHH---HHH---HhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhc
Q 000644 404 EALEAAMADLTGNIARMKELCSEL---EEK---LRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATAS 477 (1377)
Q Consensus 404 e~lE~~i~dLes~i~eL~e~~eeL---Eee---L~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~ 477 (1377)
..+...+..|...+..|......+ ... +.....-...+.+.-.-..+-..+++.++..|-. .|
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~-----------er 151 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR-----------ER 151 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH-----------HH
Confidence 444444444444444444443333 000 0000001111111001112222344444444433 34
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHH
Q 000644 478 QRNLELEDIIRASNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLN 523 (1377)
Q Consensus 478 qk~~EL~~qi~~~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~Ql~ 523 (1377)
+++.+...-++.=+..+...|..+ +.|+..-..--+++..||..+.
T Consensus 152 ~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 152 QRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455556666666666666666 7888888888888888777653
No 178
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.76 E-value=1.6e+02 Score=35.65 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 710 SLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLE 754 (1377)
Q Consensus 710 ql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~e 754 (1377)
+...+...+..++.++..+..++..++..+..++.++...+..+.
T Consensus 138 ~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 138 RKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555555544444444
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.56 E-value=55 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=14.7
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHhccch
Q 000644 454 ELELKLKSLEEQHNETGAAAATASQRN 480 (1377)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1377)
++..+...+.+....|.+.+.++-.|.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444455555555555555555555554
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.54 E-value=55 Score=37.72 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHH
Q 000644 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1377)
Q Consensus 837 lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe 916 (1377)
|..+.+..+........+..-+..+...+...-......+..+..++.++.. ....|..+..+-+.....|+.
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~-------~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA-------EIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444445555555555555566666666666666665 345566666666777777777
Q ss_pred HHHHHhhhHHHHHHHHHh
Q 000644 917 LLDSAISEKEATGQQLAS 934 (1377)
Q Consensus 917 ~l~~~~~e~e~~~e~l~~ 934 (1377)
+|..+....+.+..+|.-
T Consensus 111 el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 111 ELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666666665533
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.43 E-value=2.4e+02 Score=36.97 Aligned_cols=130 Identities=23% Similarity=0.294 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000644 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLA 849 (1377)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ 849 (1377)
+++|..+++++++-.+..|-...+ -.-|. .+|+.|+.-++.++..+..--.--+.++++..++..+-.+++
T Consensus 110 ~eekn~slqerLelaE~~l~qs~r-ae~lp--------eveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLR-AETLP--------EVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHh-hhhhh--------hhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887776665554 22222 678888887777776666555556899999999999988888
Q ss_pred HHHHH------------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHH
Q 000644 850 EAAGK------------------YALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1377)
Q Consensus 850 ea~~k------------------~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i 911 (1377)
.|+.+ +.....|..+.+++...++...+.+.+.+.++.- ....|..-+.+|-+.+
T Consensus 181 rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~-------~k~rl~~d~E~Lr~e~ 253 (916)
T KOG0249|consen 181 RARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRH-------DKDKLRTDIEDLRGEL 253 (916)
T ss_pred HHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHH
Confidence 88833 3345555555555555555555555555555443 4555555666666666
Q ss_pred HHHH
Q 000644 912 AELQ 915 (1377)
Q Consensus 912 ~~Lq 915 (1377)
++|.
T Consensus 254 ~qL~ 257 (916)
T KOG0249|consen 254 DQLR 257 (916)
T ss_pred HHHH
Confidence 6665
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.12 E-value=66 Score=42.61 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHHHHHH
Q 000644 106 LERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEAL----QAEEAKRK 181 (1377)
Q Consensus 106 ~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~l----q~~~~~~~ 181 (1377)
+..+.....+|=.++..+.++...+.+..+++..+++++..+|..|..++...= ..+..++ .+|.++.+
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl-------~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL-------QLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCCHHHHHHHH
Confidence 333444455566677777777777777777777777777777777776322111 1111111 13448888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 182 ELAEVKEAFDGLSLEIEQSRSRLQELEHKLQ 212 (1377)
Q Consensus 182 ~L~~~ke~~e~~~~~l~~~kkk~q~~~~~L~ 212 (1377)
+|...+..+..+...+++-++++.-....+.
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8988888898899999998888877555443
No 183
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.84 E-value=3.3e+02 Score=38.15 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHhhhccccchh
Q 000644 874 STNEELQRQVVEANNKANNSSSEN 897 (1377)
Q Consensus 874 ~~~~~~e~e~~e~~~~~~~~~~~~ 897 (1377)
..++.+..-+.....+++.....+
T Consensus 493 ~~r~~~~~~l~~~~~~vg~v~~D~ 516 (1109)
T PRK10929 493 SSRRHYHAFLERSSSRVGKVTQDH 516 (1109)
T ss_pred HHHHHHHHHHHHHHHhcCCccccc
Confidence 445666666666666655544443
No 184
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.81 E-value=1.4e+02 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 509 IAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMN 565 (1377)
Q Consensus 509 ~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kle 565 (1377)
..++.++.....++..++..+......+..+......+...+......+.+....+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444444444444444433
No 185
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=76.31 E-value=63 Score=37.54 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=40.8
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE 555 (1377)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~ 555 (1377)
+-||+.||+.|++-++---.---=+|+.|+..+.-...+...-......+.-....+.-....+.....++.-++.-++.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 45677788887775432111111123555554433333322222222333333333333334444444555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 000644 556 EKKQLHDQMNDYKD 569 (1377)
Q Consensus 556 eLeele~kleelq~ 569 (1377)
.+.-+.++++....
T Consensus 96 qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 96 QVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444444443
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.54 E-value=1.4e+02 Score=33.14 Aligned_cols=157 Identities=12% Similarity=0.157 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh--hHHH-------HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000644 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL--NETY-------QNAKNELQSVISQLEAQLNEKKATEETFKSE 1156 (1377)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L--~~~~-------e~~~kEl~~~i~~le~qL~~k~~i~~~~~~e 1156 (1377)
.+..++.....+.+|+.+|.+|+.-....+..++.- ...+ ..--.+++..+..|+..-.+-.++. .-
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~----qv 82 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA----QV 82 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH----HH
Confidence 345777888899999999999888777776555210 0000 1113567777777777666655544 44
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000644 1157 IESLKAQAAE----KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQR 1232 (1377)
Q Consensus 1157 I~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~ 1232 (1377)
..-++..+.+ ...|..+|..|...+..+...+.. -...+...+ ..++.++-.=++
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~----ke~~~~~ee-----------------~~~~~y~~~eh~ 141 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ----KEAEWREEE-----------------ENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----------------HHHHhhhccccc
Confidence 4445555544 666666777777776666666665 333333333 333333333335
Q ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHH
Q 000644 1233 ELQIAQTAIAEQRGADSQKDSEREAALKSSLEELG 1267 (1377)
Q Consensus 1233 el~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~ 1267 (1377)
.|-.+|..+..++..++.+....++.|.....++.
T Consensus 142 rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 142 RLLSLWREVVALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666666655555553445555555555443
No 187
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.33 E-value=2.3e+02 Score=37.70 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKL 1287 (1377)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL 1287 (1377)
-...++.+.+-|.....+|..+=++|+.+...+
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566666666777777777777776654
No 188
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.37 E-value=23 Score=39.71 Aligned_cols=78 Identities=27% Similarity=0.395 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000644 358 VSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1377)
Q Consensus 358 ~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~ 435 (1377)
...+.++..++++.++.++.+.+.+.++++.+.+++..|..++.....++..+..|-.....|..-.++|++.+.-..
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 344556666888888999999999999999999999999999999999999888888888888777777777655443
No 189
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=73.91 E-value=2.2e+02 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.7
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 000644 895 SENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1377)
Q Consensus 895 ~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~ 928 (1377)
++...+..-..||.-+|.+|.+++....+.....
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKES 120 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4566777888888888888888887776655444
No 190
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.76 E-value=2.1e+02 Score=34.38 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000644 682 ELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1377)
Q Consensus 682 ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le 740 (1377)
++..+...+......+...+....++..++..+...+......+.++..++.++++.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555555555555555555555443
No 191
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.54 E-value=18 Score=34.12 Aligned_cols=65 Identities=34% Similarity=0.284 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHH
Q 000644 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKE 926 (1377)
Q Consensus 862 le~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e 926 (1377)
++++..++.++=-++..++.++.++..+...+..+|..|..+|.+|..+-..+++.|+...+-.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666667777777777777776677778888888888888888888888777765443
No 192
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.67 E-value=2.4e+02 Score=34.76 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.4
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 000644 974 FTQRDIEANNLNEKVSVLEGQIKSYEEQA 1002 (1377)
Q Consensus 974 ~~~~e~~~keL~~kl~~~e~~~~~~~~~~ 1002 (1377)
..-++.++..++.+|.+.|..+..|..+-
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34688899999999999999999988653
No 193
>PF15294 Leu_zip: Leucine zipper
Probab=72.15 E-value=1.1e+02 Score=35.91 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHH
Q 000644 1084 EQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQ---LNEKKATEETFKSEIESL 1160 (1377)
Q Consensus 1084 eELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~q---L~~k~~i~~~~~~eI~~l 1160 (1377)
.=++..+.+++..-.+|+.++..+..+--.+.++.+.+ ...+++++...++.... ....+.+. .|+..+.-+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl----~~~L~~lq~~~~~~~~k~~~~~~~q~l~-dLE~k~a~l 202 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL----EAQLKELQDEQGDQKGKKDLSFKAQDLS-DLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccccccccccchh-hHHHHHHHH
Confidence 33555666677777777777777777766666666666 66666666644443331 11111221 233555555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhh
Q 000644 1161 KAQAAE-KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLED 1212 (1377)
Q Consensus 1161 k~~~~e-~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~ 1212 (1377)
+..+.. ..........|...+..+...+-. ++...+..+.++..+++.
T Consensus 203 K~e~ek~~~d~~~~~k~L~e~L~~~KhelL~----~QeqL~~aekeLekKfqq 251 (278)
T PF15294_consen 203 KSELEKALQDKESQQKALEETLQSCKHELLR----VQEQLSLAEKELEKKFQQ 251 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhcchhhHHHHhCc
Confidence 555544 555555666666666666666555 666666666666666644
No 194
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.83 E-value=3e+02 Score=35.46 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=5.6
Q ss_pred hhHHHHHHHhhh
Q 000644 423 LCSELEEKLRNS 434 (1377)
Q Consensus 423 ~~eeLEeeL~~~ 434 (1377)
.+++|+.+.+.+
T Consensus 210 E~e~L~~e~~~L 221 (563)
T TIGR00634 210 EDEALEAEQQRL 221 (563)
T ss_pred cHHHHHHHHHHH
Confidence 334455554443
No 195
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.86 E-value=1.8e+02 Score=32.53 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=81.0
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000644 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1377)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1377)
.-++..+-++...+..++..+....-....+++.+.++...+..+............|..+.. +...+......+..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--ALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 344555667888888888899999999999999999999999998888888877776655433 334444555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHh
Q 000644 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLR 432 (1377)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~ 432 (1377)
...+.........+...+..+...+.++......|--...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666555555555554444333
No 196
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.38 E-value=35 Score=40.71 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 000644 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1377)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~ 925 (1377)
...++....+..++.|-..+...|..+|..+.++..++..++.+...+..+-.........+.-.+.++++++.+..+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777777777777777777777777776666555555666666666666666666666666665
Q ss_pred HHHHHHHHhhh
Q 000644 926 EATGQQLASHM 936 (1377)
Q Consensus 926 e~~~e~l~~~~ 936 (1377)
.-+.+++.+..
T Consensus 123 ~~~~~~L~~L~ 133 (314)
T PF04111_consen 123 EYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 197
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.95 E-value=1.9e+02 Score=32.39 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 000644 481 LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNL 524 (1377)
Q Consensus 481 ~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~e 524 (1377)
..++.++..+...+.....++..|...+..++.++.++..+...
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333333333333333
No 198
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=69.92 E-value=2.1e+02 Score=32.80 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH-----------HHHHhcccc-hhhhhHHHHHHHH
Q 000644 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-----------ALANITSRD-SEAKSFSEKLKNL 837 (1377)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e-----------al~~~~~~~-~Ea~~l~k~L~~l 837 (1377)
.++-.+-+..-|+.++.+|-..+...+.+. ...+.+|.++++ |...+..++ +=|..+-..-..|
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~----a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAI----ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344446666677777777777777777776 455555544444 334444444 3345555777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHhh---hccccchhhhHHHHHHHhHHHHH
Q 000644 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVE--ANNK---ANNSSSENELLVETNNQLKSKVA 912 (1377)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e--~~~~---~~~~~~~~~~L~~~~~~le~~i~ 912 (1377)
+.+++.++..+..+.....-|+..+..+..++..+......+.....- +... +.++.+. +.-.....+.+.+|.
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fer~e~kie 176 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHH
Confidence 888888888888888888888888888887777777766665543322 1222 2222222 344566777778887
Q ss_pred HHHHHHHH
Q 000644 913 ELQELLDS 920 (1377)
Q Consensus 913 ~Lqe~l~~ 920 (1377)
..+...+.
T Consensus 177 e~ea~a~~ 184 (225)
T COG1842 177 EREARAEA 184 (225)
T ss_pred HHHHHHHH
Confidence 77665543
No 199
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.40 E-value=3.3e+02 Score=34.85 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHhhHH
Q 000644 349 DAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAM----------ADLTGNIA 418 (1377)
Q Consensus 349 eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i----------~dLes~i~ 418 (1377)
..++.+.-....|..+-.-++-|...+.......+.+-.-+..+......+........... ...+..+.
T Consensus 278 ~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~ 357 (570)
T COG4477 278 EAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELK 357 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666655555555555555555555444443332 23444455
Q ss_pred HhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHH---hccchHHHHHHHHHhHHHHH
Q 000644 419 RMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAAT---ASQRNLELEDIIRASNEAAE 495 (1377)
Q Consensus 419 eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~---~~qk~~EL~~qi~~~~~~~E 495 (1377)
++......+-+.+..-..-|+--.. .|+.+.+.|.+-..+++...+. +|+--++-.+-+..++.++.
T Consensus 358 el~~~~~~i~~~~~~~~~~yS~lq~----------~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ 427 (570)
T COG4477 358 ELESVLDEILENIEAQEVAYSELQD----------NLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLH 427 (570)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444443333 4444444444444444433333 33322333444445666666
Q ss_pred HHHHHH---------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 000644 496 EAKSQL---------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLST 548 (1377)
Q Consensus 496 k~k~~l---------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~ 548 (1377)
..|--| ..+...+.+..+....+..++++.-.-.....+.+......+..+..
T Consensus 428 eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~ 489 (570)
T COG4477 428 EIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLED 489 (570)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 666555 66667777777777777777766555555544444444444443333
No 200
>PRK10698 phage shock protein PspA; Provisional
Probab=67.19 E-value=2.3e+02 Score=32.26 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=91.5
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000644 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1377)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1377)
.-++.+.-+|+.++..++..+..+.-+...+++.+.++...+..+...-.....+.+|.++...-..+ ......+..+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K--~~~~~~~~~l 104 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK--QKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999988888888776655433333 3345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000644 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1377)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~ 436 (1377)
...+.........+...+..|...+.+++.....|--.......
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666666554444443
No 201
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=66.48 E-value=3.4e+02 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000644 567 YKDKITQLELILNQSNTRSSELEEELRIT 595 (1377)
Q Consensus 567 lq~kIs~LEsqLk~LqsrireLEEele~L 595 (1377)
+...+..+...+..++.++.-++.++...
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 202
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.15 E-value=1.1e+02 Score=32.26 Aligned_cols=93 Identities=12% Similarity=0.257 Sum_probs=52.2
Q ss_pred hHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 000644 1040 FERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENN 1119 (1377)
Q Consensus 1040 lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~ 1119 (1377)
+...++....++.+|...+..+..++..+..++. -++.....+...++.+...++.++.+......-+.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-----------~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA-----------SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666666665532 12223344445555555555555555555555555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q 000644 1120 SLNETYQNAKNELQSVISQLEAQL 1143 (1377)
Q Consensus 1120 ~L~~~~e~~~kEl~~~i~~le~qL 1143 (1377)
...++|...+|..+..|..+...|
T Consensus 126 ~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666665555544
No 203
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.46 E-value=4.2e+02 Score=34.37 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=93.1
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 329 IKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEA 408 (1377)
Q Consensus 329 ~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~ 408 (1377)
+...+.-+.+++..-...|.+|+.=|+.+...|+...--++.+.--++.+..+.-.+.+.+++|.=.+..++..+.-.++
T Consensus 123 L~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~ 202 (861)
T KOG1899|consen 123 LQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEK 202 (861)
T ss_pred heehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 33466777777777778888888888888888888888888888888888888888888888888777777777777777
Q ss_pred HHHHhHhhHHHhHhh-hHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccch
Q 000644 409 AMADLTGNIARMKEL-CSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1377)
Q Consensus 409 ~i~dLes~i~eL~e~-~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1377)
..++-+.-|.+++.. ..++..+--+..-..+-+ +.|+.-|+-.+.++..+-......+.++.
T Consensus 203 K~R~se~l~qevn~~kv~e~~~erlqye~klkst----------k~e~a~L~Eq~~eK~~e~~rl~~~lv~~~ 265 (861)
T KOG1899|consen 203 KLRLSENLMQEVNQSKVGEVVQERLQYETKLKST----------KGEMAPLREQRSEKNDEEMRLLRTLVQRL 265 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------cchhhhHHHHHhhhhhHHHHHHHHHHHHH
Confidence 777766666555532 122222222222222222 33666666666666655555555544444
No 204
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.42 E-value=2.6e+02 Score=31.56 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1137 SQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKE 1190 (1377)
Q Consensus 1137 ~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e 1190 (1377)
+.++.+|-.+..+...|..++..++.-..-....+.+|..|+.++..+.+....
T Consensus 50 ~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 50 SELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555554444444555555555555555554444444
No 205
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=63.28 E-value=5.9e+02 Score=35.59 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHh
Q 000644 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESL 805 (1377)
Q Consensus 756 lE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~ 805 (1377)
+...|...|+.+........-....+..+...+.........+......+
T Consensus 754 ~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 754 FDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667776665544444444555566666666666655555333333
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.25 E-value=1.4e+02 Score=37.93 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1377)
Q Consensus 334 ~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL 413 (1377)
.+....+.++-..+.........+..++..+..+++-....+......+......+..++.+|.+-+.+ .+.+++.|
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N---YE~QLs~M 492 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN---YEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHH
Confidence 356666777777777888888899999999999999888899999999999999999999998887654 78999999
Q ss_pred HhhHHHhHhhhHHHHHHHhhh
Q 000644 414 TGNIARMKELCSELEEKLRNS 434 (1377)
Q Consensus 414 es~i~eL~e~~eeLEeeL~~~ 434 (1377)
...+..|++.+..-.++++.+
T Consensus 493 SEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 493 SEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888887765
No 207
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.85 E-value=1.7e+02 Score=33.67 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHH
Q 000644 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELE 428 (1377)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLE 428 (1377)
...+.|..-.+++..+..-+...+..+......+..+......|.+...++.
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555544444444444433
No 208
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.66 E-value=46 Score=31.08 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=40.4
Q ss_pred HhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 000644 807 RESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA 886 (1377)
Q Consensus 807 kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~ 886 (1377)
.++|.+++.|+|+++ -+|-++++...+.++|..|....+....++++.+++++++-..-
T Consensus 7 ekLE~KiqqAvdTI~---------------------LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 7 EKLEAKVQQAIDTIT---------------------LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777644 45666666666677777777777777777777777776654444
Q ss_pred Hh
Q 000644 887 NN 888 (1377)
Q Consensus 887 ~~ 888 (1377)
.+
T Consensus 66 Qe 67 (79)
T COG3074 66 QE 67 (79)
T ss_pred HH
Confidence 43
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.35 E-value=2.4e+02 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000644 682 ELEAFQARTSSLEVAL 697 (1377)
Q Consensus 682 ELE~~eke~relEt~L 697 (1377)
+|..++.++..++..+
T Consensus 54 eLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 54 ELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 210
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=61.38 E-value=3.6e+02 Score=34.28 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 677 CELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESI 756 (1377)
Q Consensus 677 ~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esl 756 (1377)
.+....+-....++..+.+.+....+..-.|..++-++.+.++-+-.+++++...|...-+.-..+..|+..++.+-...
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555556666666666788888888888888888888888888777777777777776666665555
Q ss_pred HHHHHHh
Q 000644 757 EKDLKAA 763 (1377)
Q Consensus 757 E~~l~~~ 763 (1377)
.+.+++.
T Consensus 288 m~~~~Ea 294 (596)
T KOG4360|consen 288 MQMLHEA 294 (596)
T ss_pred HHHHHHH
Confidence 5555544
No 211
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.81 E-value=87 Score=33.78 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=47.8
Q ss_pred hhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 1044 SGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1377)
Q Consensus 1044 lr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1377)
+...-..|..|..++..+...++.|..+|. ...+.-|.++|...+..+...+..+..++..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~--~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA--SLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444566777777777777777777775 4556677788888888888888888888888876
No 212
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.75 E-value=4.2e+02 Score=33.90 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=84.0
Q ss_pred cchhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhH
Q 000644 823 RDSEAKSFSEKL--KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1377)
Q Consensus 823 ~~~Ea~~l~k~L--~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L 900 (1377)
.+.++. ++| .-+...|.++-.++.-+.-|+..+.+|-..+...|..++..++.+..++..+...+..+.. -|
T Consensus 405 ~E~esR---E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL 478 (518)
T PF10212_consen 405 PEEESR---EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---EL 478 (518)
T ss_pred CchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 345555 444 4578899999999999999999999999999999999999988888888777775555443 35
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHH
Q 000644 901 VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELT 943 (1377)
Q Consensus 901 ~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~ 943 (1377)
.-+.+.||.-|+-|-+-|-+ ++++|.+-...|+.|-
T Consensus 479 ~TTr~NYE~QLs~MSEHLas-------mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 479 ETTRRNYEEQLSMMSEHLAS-------MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 66889999999888887654 4677777777777664
No 213
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=60.28 E-value=13 Score=44.19 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000644 514 RSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1377)
Q Consensus 514 k~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele 593 (1377)
++..|...++.+..-+.+....++.+...+..++..+..+...+..+...+......|..|+..+..+...+.+|...+.
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 33333333444444444444444444444444444444444444444444444555555555555555555555555554
Q ss_pred HHHHHhhhHHHHhh
Q 000644 594 ITKERSAEDEDRAN 607 (1377)
Q Consensus 594 ~L~EeLeE~e~ra~ 607 (1377)
...-.+..++.|.+
T Consensus 137 t~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 137 TQALNITDLESRVK 150 (326)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhcchHhhHHHHHH
Confidence 44444444443333
No 214
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=60.09 E-value=17 Score=43.34 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000644 520 QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1377)
Q Consensus 520 ~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLE 589 (1377)
..+..++..++.+...+..+...+......|..+...+..+...+..++..++.+.-.+..++.|+..||
T Consensus 84 stV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 84 STVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 3333444444444444444444444444444444444444444444444444444444444444444443
No 215
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.98 E-value=3.5e+02 Score=34.73 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 1054 LTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1377)
Q Consensus 1054 L~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1377)
..++|+.+..++.++.+-. -.+++.-+-+|+....+.+...|-|+-+++++.+
T Consensus 435 ~~~Ei~~~QA~M~E~~Dt~---~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 435 TTTELRKEQAQMNELKDTV---FKSDVQKVISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 3467777777766666642 2445565666666777777777777777777666
No 216
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.06 E-value=3.7e+02 Score=32.96 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHh---hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1232 RELQIAQTAIAEQ---RGADSQKDSEREAALKSSLEELGAKNKEAALLQN 1278 (1377)
Q Consensus 1232 ~el~~l~~~I~~y---~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~ 1278 (1377)
.+|......|..- ..+.+-| -....+|..+..+|..+.-.|..++.
T Consensus 308 eeLe~vK~emeerg~~mtD~sPl-v~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 308 EELEQVKQEMEERGSSMTDGSPL-VKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHHHHHhhhhhheehh
Confidence 5555555566555 2233444 45667777777777776666665543
No 217
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.08 E-value=6.3e+02 Score=34.31 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 480 NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ 559 (1377)
Q Consensus 480 ~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLee 559 (1377)
+++|.+|||.+-++. .-+..|...+-+.+.+.+.|+..+..++.=-.--+.-+....+..-.|+.+|.-+..-+.+
T Consensus 433 iadlkEQVDAAlGAE----~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~ke 508 (1243)
T KOG0971|consen 433 IADLKEQVDAALGAE----EMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKE 508 (1243)
T ss_pred HHHHHHHHHHhhcHH----HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556666533322 2236777778888999999999888765432222222233334455666677666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000644 560 LHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598 (1377)
Q Consensus 560 le~kleelq~kIs~LEsqLk~LqsrireLEEele~L~Ee 598 (1377)
++.+++..+..+-.+...|..+...+..|.+.+..+..+
T Consensus 509 l~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 509 LQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777777777776666655543
No 218
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=57.40 E-value=3.4e+02 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=10.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 502 RELEPRFIAAEQRSVELEQQLNLV 525 (1377)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~el 525 (1377)
..+......+=..+..+..++..+
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh
Confidence 344444444444444444444443
No 219
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.97 E-value=1.7e+02 Score=30.57 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 000644 483 LEDIIRASNEAAEEAKSQL 501 (1377)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l 501 (1377)
+.-|++++...+..+|.+|
T Consensus 48 v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4467777777776666655
No 220
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=55.57 E-value=5.1e+02 Score=32.42 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000644 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQ 1296 (1377)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~~ 1296 (1377)
....|......+..--........++++|+.++.-....|..
T Consensus 350 ~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 350 QEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 335555555555555566667777888888888877777765
No 221
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=55.43 E-value=7.7e+02 Score=34.47 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 387 AQVSNVNEELDKVSKEKEALEAAMA 411 (1377)
Q Consensus 387 ae~~eL~eELe~l~~~ke~lE~~i~ 411 (1377)
..+......+..+......+.....
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (1047)
T PRK10246 257 QEASRRQQALQQALAAEEKAQPQLA 281 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444444444444444444443333
No 222
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.27 E-value=1.4e+02 Score=33.59 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhh
Q 000644 1170 LETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKL 1210 (1377)
Q Consensus 1170 le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~ 1210 (1377)
+...+..|+.++..++++|.+ +...+......++..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~----~~~~~~~~~~~l~~~~ 127 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN----IDNTWNQRTAEMQQKV 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 334556666666666666666 5555554454444444
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.16 E-value=4.3e+02 Score=31.14 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQ 750 (1377)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q 750 (1377)
+..+.-|+..+...+.+++-++..+..++.+++-.+
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666655555554333
No 224
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.91 E-value=2.6e+02 Score=34.18 Aligned_cols=107 Identities=11% Similarity=0.192 Sum_probs=62.5
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1377)
Q Consensus 322 ~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~ 401 (1377)
.+.+-+-|+..+.+.+.-.......+.+++..|.+...++.....|| ...-.- .+.+|..+..++.....
T Consensus 211 ~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI---~sREk~-------iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 211 IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI---ESREKY-------INNQLEPLIQEYRSAQD 280 (359)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHhHHHHHHHHHHHH
Confidence 44455677777888888888888888888888888888887777777 111222 23344444444444444
Q ss_pred HHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhh
Q 000644 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1377)
Q Consensus 402 ~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~ 438 (1377)
+...+......++..+.++...+.++-++|.....+.
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.72 E-value=4.3e+02 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=16.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 573 QLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 573 ~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.|++++..+.+|.+.|+.....+.-+++.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQER 77 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666555554444
No 226
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.39 E-value=3.8e+02 Score=29.97 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhh
Q 000644 355 HAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNS 434 (1377)
Q Consensus 355 ~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~ 434 (1377)
..+-.+...+..++.+...........|.+++..+.+++.....+...++.....|..+.+....+.+.+...+.....+
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444455567777888888888889888888888899999889888888888888877777666554
No 227
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.28 E-value=1.8e+02 Score=32.83 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHHhh
Q 000644 518 LEQQLNLVELK 528 (1377)
Q Consensus 518 LE~Ql~elq~K 528 (1377)
++.++..++.+
T Consensus 98 le~el~~l~~~ 108 (206)
T PRK10884 98 LENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 228
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.90 E-value=4.4e+02 Score=30.61 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000644 841 VKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE 878 (1377)
Q Consensus 841 ik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~ 878 (1377)
..+|...+.-|-.+..-|+.||.+-...|....|-+.+
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555555555556666665555444444444433
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.81 E-value=3.7e+02 Score=30.02 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 490 SNEAAEEAKSQLRELEPR---FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND 566 (1377)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~---~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~klee 566 (1377)
+.+.++.....+..|+.. ......++.. +-.+.......-.....+..++.....+...++..+..++.++.+
T Consensus 67 ~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 67 SRSSFESLMKTLSELEEHGFNVKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred cHHHHHHHHHHHHHHHHcCCccHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556666666666555543 2223333322 334444445555556666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 567 YKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 567 lq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
++.....+..........+..++...+.+.+.+..
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666555
No 230
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.97 E-value=4.7e+02 Score=30.67 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1256 EAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQA 1292 (1377)
Q Consensus 1256 e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~ 1292 (1377)
......+..+|..-...|..+..+|..|...+..-.+
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666666666554333
No 231
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=50.92 E-value=7.4e+02 Score=32.91 Aligned_cols=69 Identities=16% Similarity=0.321 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Q 000644 716 DEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRV 787 (1377)
Q Consensus 716 k~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~ 787 (1377)
..+..|..+...++.+|.+....-+.+++..+-+...++.+.+..+.. .+..-.-+..+..-+.+.+..
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~---~~~mrd~~~~~~e~~~~~~~~ 284 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEK---EQELRDHLRTYAERRRETETT 284 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh---hhhhcchhhhhHHHHHhhcch
Confidence 346667777777777777777666666666655555555555322222 333444444444444444444
No 232
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=50.82 E-value=4.2e+02 Score=30.01 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=9.0
Q ss_pred HHHHHHHHhhHHHHHHH
Q 000644 660 KKCEEAEAGSKQYSDKV 676 (1377)
Q Consensus 660 KK~k~~eqel~el~~~l 676 (1377)
.....|+.+...|.+..
T Consensus 156 ~q~~~Fe~ER~~W~eEK 172 (202)
T PF06818_consen 156 EQRSSFEQERRTWQEEK 172 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455666666665443
No 233
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=50.52 E-value=83 Score=29.50 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 000644 900 LVETNNQLKSKVAELQELLDS 920 (1377)
Q Consensus 900 L~~~~~~le~~i~~Lqe~l~~ 920 (1377)
...++..|.+++..|..+|++
T Consensus 45 a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444443
No 234
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.77 E-value=68 Score=30.81 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=26.9
Q ss_pred hccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHH
Q 000644 890 ANNSSSENELLVETNNQLKSKVAELQELLDSAISEKE 926 (1377)
Q Consensus 890 ~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e 926 (1377)
...+.++...|..+|.+|..+-+.+++.|.....-++
T Consensus 41 ~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 41 VQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334456677888888888888888888887776554
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.92 E-value=1.9e+02 Score=26.57 Aligned_cols=58 Identities=16% Similarity=0.352 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhH
Q 000644 364 IKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1377)
Q Consensus 364 l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~ 421 (1377)
|++-++.|+..+..+...+......-..+...|.........+...|..|...+.+++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566667777777777777777777777777777777777777777776555543
No 236
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.55 E-value=1.7e+02 Score=33.18 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhH
Q 000644 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1377)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~ 925 (1377)
+...+.+.++.-+..|-+.++..|.-++. +..+..+++-.+..+|+.|.+..++|.+++..|...+++.....
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~-------e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEA-------EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 34444444555555555555544433333 33333334444445677777777777777777777777766555
Q ss_pred HHH
Q 000644 926 EAT 928 (1377)
Q Consensus 926 e~~ 928 (1377)
+..
T Consensus 208 El~ 210 (290)
T COG4026 208 ELP 210 (290)
T ss_pred cch
Confidence 444
No 237
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.47 E-value=7.1e+02 Score=32.03 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhhh
Q 000644 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQ 611 (1377)
Q Consensus 534 rei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~~~rq 611 (1377)
..|..+......|+..+..+...+.+....+..|+.-.++|-+..-....++..++--+.+-.++|...+..+.-.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666677777777778888888888888888888888877777777766665544444443
No 238
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.53 E-value=4.7e+02 Score=30.09 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000644 657 KLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1377)
Q Consensus 657 ~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElk 729 (1377)
...+++..+..+...+...+..+..+++.+......++..+...+..+.+|..+++.+......+.--...+-
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~ 111 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMI 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666666666666666666666655555555554444443
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.50 E-value=2.3e+02 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND 566 (1377)
Q Consensus 519 E~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~klee 566 (1377)
..+|..|...-..+....-.+...|.+|+..+...+..+..+..+++.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333333444444444444444444333333333333
No 240
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.30 E-value=9.5e+02 Score=32.86 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHH
Q 000644 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVA 912 (1377)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~ 912 (1377)
.+..+..||.-++..+-...+ .++-+|+..+..+...++..+..+.++..+....+....-.+......+.++-+.++
T Consensus 331 ~~~~lK~ql~~l~~ell~~~~--~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~ 408 (913)
T KOG0244|consen 331 EMLKLKAQLEPLQVELLSKAG--DELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTD 408 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHH
Confidence 455566666666666554431 226688899999999999999999999999988888888888888889988888887
Q ss_pred HHHHHHHHHh
Q 000644 913 ELQELLDSAI 922 (1377)
Q Consensus 913 ~Lqe~l~~~~ 922 (1377)
...+.+...-
T Consensus 409 ~~~~~~~~~~ 418 (913)
T KOG0244|consen 409 SCMNLLSEDS 418 (913)
T ss_pred HHHHHHHHhH
Confidence 7777666554
No 241
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.27 E-value=5.5e+02 Score=30.12 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 000644 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTR 786 (1377)
Q Consensus 707 L~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~ 786 (1377)
+.....+++.-..+.+..+..+..++..+.+.+...+.+|+.+--..+ .|==+.+. .+.+-.++++.-=.+++.
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~v-----qIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAV-----QIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 444455556666667777777777777777777777777776665555 33222221 112222222222233444
Q ss_pred HHHHHh-hhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 787 VLEQAT-SRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSY 865 (1377)
Q Consensus 787 ~Le~e~-~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~ 865 (1377)
+|++.. -.+.++ .+|+.+++..-...+..-++-. +..|+.-+-.-...+..|..++..+
T Consensus 139 Eldel~e~~~~el--------~~l~~~~q~k~~~il~~~~~k~------------~~~~~~~l~~~~~~N~~m~kei~~~ 198 (258)
T PF15397_consen 139 ELDELNEMRQMEL--------ASLSRKIQEKKEEILSSAAEKT------------QSPMQPALLQRTLENQVMQKEIVQF 198 (258)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH------------HhhchHHHHHHHHHHHHHHHHHHHH
Confidence 554443 222333 3555555543333332222222 2333332222234455666666666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHh
Q 000644 866 FIKVTSLESTNEELQRQVVEANN 888 (1377)
Q Consensus 866 ~~~l~~~E~~~~~~e~e~~e~~~ 888 (1377)
+..+..++-.+-.++.++..+..
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555543
No 242
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.18 E-value=1.2e+02 Score=27.45 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 000644 1083 VEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNET 1124 (1377)
Q Consensus 1083 veELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~ 1124 (1377)
+++|-...+.++.++..|..+++.++.+...+.+|+.+.|..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888888888888888887543
No 243
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.09 E-value=6.9e+02 Score=31.21 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000644 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITK 596 (1377)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~ 596 (1377)
+++.++.-++.|+.+++..-+-....-++++.++..+..-+..++ +.++..-...+..+..-.-|-+.+.-.+..-.
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LE---Eq~reqElraeE~l~Ee~rrhrEil~k~eRea 295 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLE---EQRREQELRAEESLSEEERRHREILIKKEREA 295 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhh-HHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000644 597 ERSAE-DEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDK 675 (1377)
Q Consensus 597 EeLeE-~e~ra~~~rqrs~eLeell~~~kskLEe~~~~leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~ 675 (1377)
.---+ .+.+...+.....++...+..++.-.+...+...-....++.++.++...+...--+-..+..|.++......-
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000644 676 VCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKL 732 (1377)
Q Consensus 676 l~kLk~ELE~~eke~relEt-~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqL 732 (1377)
+.++..+++.+......... ..---.+.+-.|...+..+...-+.|..+..++..++
T Consensus 376 ieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
No 244
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.82 E-value=2.8e+02 Score=28.58 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1232 RELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1232 ~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~ 1295 (1377)
++|..+.....=| .-||-=...-......++...++.++..|..++++...+.+++.+....+.
T Consensus 45 ~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 45 EELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333444 333332212334455556666666666666666666666666665555544
No 245
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=44.73 E-value=7.2e+02 Score=31.65 Aligned_cols=139 Identities=24% Similarity=0.250 Sum_probs=92.9
Q ss_pred cccchhhhhhhhhccccccccCcccccccCCCccccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhhH
Q 000644 46 LDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQD 125 (1377)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ 125 (1377)
.=||-||==-=.|++--...-|+|-+++| ...+-|++|||.+-..-.--+++.+.-....-.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPLsPgE------------------~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~ 119 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPLSPGE------------------QGLQRKLKELEDEQKEDEVREKHNKKIIEKFGN 119 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCCCHhH------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44666665444556655666777777776 567899999999988888888888877777777
Q ss_pred HHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhh
Q 000644 126 DVLITKEKLEE-------SGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA-----KRKELAEVKEAFDGL 193 (1377)
Q Consensus 126 el~~~ke~l~~-------~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~~-----~~~~L~~~ke~~e~~ 193 (1377)
+|.++..-... -+..++-|+....-+.. |++.|+ ..+..|..+|+-|.. -++-...++..++.+
T Consensus 120 ~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~-i~~~E~---~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL 195 (508)
T PF00901_consen 120 DLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGK-IVKEEN---KQLDRLARALQKESRERTQDERKMVEEYRQKIDAL 195 (508)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 77776643332 23344445544444443 444444 467889999999983 334444566777888
Q ss_pred hHHHHHHHHHHHH
Q 000644 194 SLEIEQSRSRLQE 206 (1377)
Q Consensus 194 ~~~l~~~kkk~q~ 206 (1377)
...++.++-=|++
T Consensus 196 ~~aIe~Er~~m~E 208 (508)
T PF00901_consen 196 KNAIEVEREGMQE 208 (508)
T ss_pred HHHHHHHHhhHHH
Confidence 7777777777765
No 246
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=44.70 E-value=7.3e+02 Score=31.08 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=5.9
Q ss_pred HHHHHHHHHhHHHHHH
Q 000644 481 LELEDIIRASNEAAEE 496 (1377)
Q Consensus 481 ~EL~~qi~~~~~~~Ek 496 (1377)
..+..++......+..
T Consensus 175 ~~~~~~i~~~~~~~~~ 190 (457)
T TIGR01000 175 AQLDQQISKTDQKLQD 190 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 247
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.29 E-value=3.2e+02 Score=28.68 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=45.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000644 1126 QNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVE 1185 (1377)
Q Consensus 1126 e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae 1185 (1377)
...++.|...|.++-.+|....++...+.+++...+..++. +..+..-+..|+.+|...+
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55567777778888888888888888888888888887776 6677777777777776543
No 248
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.99 E-value=2.9e+02 Score=35.83 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=6.4
Q ss_pred HHhhhhhhhHHHHH
Q 000644 284 LKRSNTEISAIQEE 297 (1377)
Q Consensus 284 ls~~~~eL~~~~e~ 297 (1377)
.|++....+.|=++
T Consensus 270 ~S~r~~~~~eVve~ 283 (652)
T COG2433 270 ESRRGIDRSEVVEF 283 (652)
T ss_pred eccccCCHHHHHHH
Confidence 34455555553333
No 249
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.68 E-value=7.5e+02 Score=30.93 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1377)
Q Consensus 705 reL~eql~elek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1377)
.+++.+++.....+....+....- +.+..-..++..+..+++.+.+....-+.+++.
T Consensus 336 e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~ 392 (446)
T KOG4438|consen 336 ENLTKQLNELKKEKESRRQDLENR--KTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEK 392 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcccchhhccHHHHHHHH
Confidence 456666666655544444443332 235555566666666666666665555555554
No 250
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=43.38 E-value=8.1e+02 Score=31.22 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=12.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 000644 1141 AQLNEKKATEETFKSEIESLK 1161 (1377)
Q Consensus 1141 ~qL~~k~~i~~~~~~eI~~lk 1161 (1377)
..+..+.|+- +|+..|+.-|
T Consensus 367 ~~Ia~QTNLL-ALNAaIEAAR 386 (553)
T PRK15048 367 DGIAFQTNIL-ALNAAVEAAR 386 (553)
T ss_pred HHHHHHHHHH-HHHHHHHHhc
Confidence 3455555665 6677776665
No 251
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.29 E-value=6.6e+02 Score=30.20 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh-------HHH---------HHHHHHHHHH
Q 000644 678 ELASELEAFQARTSSLEVALQMANDK-ERELTESLNAAADEKRKLQDTSNG-------YNE---------KLAEAENLLE 740 (1377)
Q Consensus 678 kLk~ELE~~eke~relEt~L~e~~ek-~reL~eql~elek~k~~LE~EieE-------lke---------qLeElE~~Le 740 (1377)
.+..+++.+..+.-.++..|..-++. +..|..+.+.+...++.|+..+.. ... -..-..+.+.
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~ 232 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIR 232 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHH
Confidence 34444555555555566655444333 445666666666666666666541 110 1123344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000644 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1377)
Q Consensus 741 ~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~ 795 (1377)
.||.++.-+...+...+.+-.++ ...+...-+....--..++..|..+..++
T Consensus 233 ~Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 233 SLRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666555555544443 33333333333333334444444444333
No 252
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.26 E-value=9.4e+02 Score=31.95 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q 000644 1084 EQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEE-TFKSEIESLKA 1162 (1377)
Q Consensus 1084 eELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~-~~~~eI~~lk~ 1162 (1377)
++.-.+...+......|...+...+..+.......... ++-..+.......+...|...+.+-+ ++...+.+..+
T Consensus 510 EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~A----r~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEs 585 (739)
T PF07111_consen 510 EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAA----RKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVES 585 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666666666665555555 55555555555555555555554443 33334444444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1163 QAAE-KFALETRIKELEELLVNVETQFKE 1190 (1377)
Q Consensus 1163 ~~~e-~~~le~~ie~L~~~i~~ae~~l~e 1190 (1377)
...+ ....+.++++-.++..+|=..|..
T Consensus 586 rl~E~L~~~E~rLNeARREHtKaVVsLRQ 614 (739)
T PF07111_consen 586 RLREQLSEMEKRLNEARREHTKAVVSLRQ 614 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 444444444444444444444443
No 253
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.63 E-value=2.4e+02 Score=26.54 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELI 577 (1377)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsq 577 (1377)
|+..+..|+.+++.+.+.+..+......+..+-......+..+-..+..+...+..|..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666655555555555444444444444444444444444333
No 254
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=42.53 E-value=1e+03 Score=32.07 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhh
Q 000644 1012 RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLS 1073 (1377)
Q Consensus 1012 ~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs 1073 (1377)
-|+|+++|+..++.+.-++..-+..-.-+.-.++-+=+.|.||+.-.|.+.+-...|...|+
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls 560 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLS 560 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35677787777777777776665555555555677777777777777777777777766664
No 255
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.22 E-value=5.5e+02 Score=28.98 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=36.4
Q ss_pred hHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000644 461 SLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQL 522 (1377)
Q Consensus 461 ~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql 522 (1377)
.+.+..-.-|+-..+++|-..++.+.|..++..+-.....-..++............++.+-
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666777777777777777666666655555555555555555555544443
No 256
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.20 E-value=1.3e+02 Score=35.37 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1220 RNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1220 ~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~ 1295 (1377)
+..|.+....+...++.|...+..+ ..-..+. .++-.+|-.+...+-.+...+..+..+|+.+.+.|-.-.++..
T Consensus 124 k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq-~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~~ 199 (300)
T KOG2629|consen 124 KRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQ-SELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFAP 199 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccCC
Confidence 3555555555556666666666666 3333344 6778888888888889999999999999999999887777663
No 257
>PF14282 FlxA: FlxA-like protein
Probab=41.88 E-value=1.3e+02 Score=30.34 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=37.6
Q ss_pred HHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000644 1056 EDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIM 1115 (1377)
Q Consensus 1056 kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~ae 1115 (1377)
..|..|..+|..|..+|.....+...+.++-+..+..+..+|..|...|..|+.+.-...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555552111224456777777888888888888888887777665443
No 258
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.52 E-value=3.4e+02 Score=27.32 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000644 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1294 (1377)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~ 1294 (1377)
....+..+...++.++..|..++.++..+..++.+....+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666555555555554443
No 259
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.49 E-value=1.6e+02 Score=31.79 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 340 ISALDNLLADAKENLHAKVSELEDIKLKL 368 (1377)
Q Consensus 340 ~~~le~~l~eL~~~l~~k~~El~~l~~kl 368 (1377)
+..+...+..+...+.....++..+.+.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444444444444444444444444
No 260
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.45 E-value=8.3e+02 Score=30.80 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---H
Q 000644 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIA---E 1243 (1377)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~---~ 1243 (1377)
+.-++.++...+..+..|+..|-. ++.++----=..+. ..+...+..|+.++..+..... .
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~----fRn~~gvlDP~~~a------------~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLK----IQHIQKDIDPKETI------------TAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCcChHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666677777777777777777776 55444211100000 2222333333444444443333 3
Q ss_pred h-hcCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1244 Q-RGADSQKDSEREAALKSSLEELGAKNKEAA 1274 (1377)
Q Consensus 1244 y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~ 1274 (1377)
| ..+.|+. ..+...|..+..+|......+.
T Consensus 308 ~~~p~sPqV-~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 308 NGLDQNPLI-PRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred hcCCCCCch-hHHHHHHHHHHHHHHHHHHHhh
Confidence 3 5555666 5555555555555555555553
No 261
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.04 E-value=9.9e+02 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.+..|+.+.-.+-+.+.+|.=.+..+..+..+
T Consensus 168 srtsLETqKlDLmaevSeLKLkltalEkeq~e 199 (861)
T KOG1899|consen 168 SRTSLETQKLDLMAEVSELKLKLTALEKEQNE 199 (861)
T ss_pred hhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhh
Confidence 34566666666666666666555554443333
No 262
>PRK04406 hypothetical protein; Provisional
Probab=39.27 E-value=1.8e+02 Score=27.75 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1377)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~e 556 (1377)
+++.+..|+.++...+.-|..|...+...+..|..+...
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333333
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.21 E-value=5.8e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1219 DRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVA 1281 (1377)
Q Consensus 1219 ~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn 1281 (1377)
+|..+-..+.+|+.++..+...+..| ..+|..+ .....++......+..-...|-.+..-+.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i-~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKI-EKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45556666667778888888898999 7777777 66666666665555555555555544443
No 264
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.92 E-value=4.2e+02 Score=26.67 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 000644 715 ADEKRKLQDTSNGYNEKLAEAE 736 (1377)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE 736 (1377)
+..+..|+.....+..++.+++
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.92 E-value=6.1e+02 Score=29.14 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000644 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSS 586 (1377)
Q Consensus 546 Lq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsrir 586 (1377)
+..++..+..++..++..+..+...+.+.+..+..+..++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 266
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.88 E-value=20 Score=36.19 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHhcc
Q 000644 1354 MTFKFIIGVALVSVIIGITLG 1374 (1377)
Q Consensus 1354 ~~~k~~~~va~~s~~~~~~~~ 1374 (1377)
.+.-||-|| ||.+.|||||-
T Consensus 48 lssefIsGi-lVGa~iG~llD 67 (116)
T COG5336 48 LSSEFISGI-LVGAGIGWLLD 67 (116)
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 344477776 68888998764
No 267
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.86 E-value=4.4e+02 Score=34.25 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=32.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 333 ESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD 412 (1377)
Q Consensus 333 ~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~d 412 (1377)
+..++.....|+..+.+++..+..++.+|..+..++ ...-.....+......+..|..+|.+.......++..++.
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~----~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREV----RDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444 2222233334444444444444444444444444433333
No 268
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.13 E-value=9.3e+02 Score=30.39 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000644 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD----QMNDYKDKITQLELILNQSNTRSSELEEE 591 (1377)
Q Consensus 516 keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~----kleelq~kIs~LEsqLk~LqsrireLEEe 591 (1377)
..-+..+..+..++......+.++..+|.+-+.-+...-..+..... .-.+ -..|..++..+.....+++.=++.
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel 367 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEEL 367 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33445555555555555566666666666555555443333322221 1111 244455555555555555543333
Q ss_pred HHHHHHHhh
Q 000644 592 LRITKERSA 600 (1377)
Q Consensus 592 le~L~EeLe 600 (1377)
...|+-+++
T Consensus 368 ~~~Lrsele 376 (521)
T KOG1937|consen 368 AEKLRSELE 376 (521)
T ss_pred HHHHHHHHh
Confidence 333333333
No 269
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.70 E-value=3.2e+02 Score=27.17 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1254 EREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQA 1292 (1377)
Q Consensus 1254 e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~ 1292 (1377)
.+...+..+...++.++..|..++.++..+.+++.+...
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555554444433
No 270
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.67 E-value=3.3e+02 Score=25.11 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 561 HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 561 e~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
...+...+..--.+++.++....+.+.|..++..+..++++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666677777888888888888888888777776
No 271
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.39 E-value=2.1e+02 Score=33.63 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHH
Q 000644 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1377)
Q Consensus 835 ~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~L 914 (1377)
+.+-.+-.....+-+...+++...+.|++.+.++|...|-...++...+-+...+++.+.-..+.|.....-+.+++..+
T Consensus 182 ~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 182 KEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 000644 915 Q 915 (1377)
Q Consensus 915 q 915 (1377)
+
T Consensus 262 ~ 262 (269)
T PF05278_consen 262 H 262 (269)
T ss_pred c
No 272
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.39 E-value=4e+02 Score=26.42 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=44.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1214 AHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAEL 1283 (1377)
Q Consensus 1214 ~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~l 1283 (1377)
..+.+.+-.+...+-.++.+-+.+...|... ..| ... .......+.+..+|..++..+..++.++..+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~-~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDA-EELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677767777778888888888 433 444 4556666666666666666666666666544
No 273
>PRK11519 tyrosine kinase; Provisional
Probab=36.87 E-value=1e+03 Score=31.82 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=24.2
Q ss_pred HhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 000644 970 AIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQ 1001 (1377)
Q Consensus 970 ~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~ 1001 (1377)
+.+...-++.++..++.+|...|..+..|..+
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467788899999999999998887643
No 274
>PRK15396 murein lipoprotein; Provisional
Probab=36.79 E-value=1.5e+02 Score=28.52 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 000644 1082 TVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQN 1127 (1377)
Q Consensus 1082 TveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~ 1127 (1377)
-+++|+.+.+.++.++..+...++.+......+.+|+.|.|...-|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999998654433
No 275
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=36.73 E-value=7.3e+02 Score=29.35 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=60.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000644 1100 LTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE---KFALETRIKE 1176 (1377)
Q Consensus 1100 Lr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e---~~~le~~ie~ 1176 (1377)
...++..|-.++-+++.....-...||...|.+++....+.-.-..+..+. .+|..++..--+ +..++.+|-.
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~----d~I~kLk~k~P~s~kl~~LeqELvr 176 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQ----DEIAKLKYKDPQSPKLVVLEQELVR 176 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-TTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH----HHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333455555555555666666678889999986555555555555555555 888888754322 8889999999
Q ss_pred HHHHHHHHHHHhhh
Q 000644 1177 LEELLVNVETQFKE 1190 (1377)
Q Consensus 1177 L~~~i~~ae~~l~e 1190 (1377)
++.....+++.|..
T Consensus 177 aEae~lvaEAqL~n 190 (271)
T PF13805_consen 177 AEAENLVAEAQLSN 190 (271)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 99998888888877
No 276
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=36.72 E-value=4.4e+02 Score=32.72 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 872 LESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 872 ~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
.+-....+..++...+.....+.+++..+..+-+.+.+++...+-.|...+-|....+++.-.+..+..++|...
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDV 85 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666677777778999999999999999999999999999999999999888888888888877
No 277
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.45 E-value=8.4e+02 Score=32.97 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHhCCCHHHHHHHHHhhhhH
Q 000644 294 IQEELGLSKLQLLDLEQRFSSK 315 (1377)
Q Consensus 294 ~~e~lglsKaiL~~vekkf~~~ 315 (1377)
+-..+|+|+.||+.-+.-+...
T Consensus 488 iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 488 IAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred HHHHhCcCHHHHHHHHHHHHhh
Confidence 4455788888887776555433
No 278
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.69 E-value=3.5e+02 Score=27.46 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000644 545 QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1377)
Q Consensus 545 kLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~~~r 610 (1377)
++..++..+...+..+..-+.+.+.+-..|..+++.....++-++.++++|...-..+..|...+.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777788888888888888888888888888888888877765555444444333
No 279
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=35.54 E-value=1.1e+03 Score=30.28 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHhhhhHHHHHHhccchHHHHHHHHH
Q 000644 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRA 489 (1377)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~ 489 (1377)
++..+...++.....++.+.+.+.+-...|..++++
T Consensus 82 ~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 82 DLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666677777777
No 280
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.41 E-value=3.9e+02 Score=25.27 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000644 540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKE 597 (1377)
Q Consensus 540 eekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~E 597 (1377)
+.++...-..|.=+.-++.++..+.+.+......++-....+..+...|..+...+.+
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444433333
No 281
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.69 E-value=5.3e+02 Score=26.59 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHH
Q 000644 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQS 1134 (1377)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~ 1134 (1377)
|+...+..-..+..++..+..+..++.......+.+ .....+++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~----~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI----NKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 444444555556666677777777777777666666 666666543
No 282
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.50 E-value=1.6e+02 Score=27.40 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Q 000644 522 LNLVELKSSDSEREVREFSEKLSQ 545 (1377)
Q Consensus 522 l~elq~K~~e~erei~eLeekisk 545 (1377)
+..|+.++..++..|..|...+..
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~ 29 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTE 29 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 283
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=34.26 E-value=4.4e+02 Score=25.53 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhh
Q 000644 895 SENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL 950 (1377)
Q Consensus 895 ~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~ 950 (1377)
+.-.....-...|...|..++..+.....+.+..-..+..+......+..-..+-.
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456667778888888888888888888888888777777665555443333
No 284
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=34.13 E-value=6.8e+02 Score=27.66 Aligned_cols=53 Identities=32% Similarity=0.406 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 490 SNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1377)
Q Consensus 490 ~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~ 551 (1377)
..+.++++|+++ ..|..++..+.+++..|+ +......|..|.-+|..|+.++.
T Consensus 73 ~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~le---------L~s~~~ei~~L~~kI~~L~~~in 129 (181)
T PF04645_consen 73 SNAEARNAKSELEMERSNLELSFIDSFNQYKNLE---------LKSIKKEIEILRLKISSLQKEIN 129 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888899888 688888999988887754 33334444445555555555544
No 285
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=34.10 E-value=4.7e+02 Score=25.85 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000644 341 SALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1377)
Q Consensus 341 ~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes 415 (1377)
..+.....++...+..+..++..+..++--=...++..-.++|........+..++..++....+-.+.+..|..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555566666666655555544455566666677777777777777777777777777777666664
No 286
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.01 E-value=9e+02 Score=29.04 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000644 378 VEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1377)
Q Consensus 378 ~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLe 414 (1377)
....+.+...++...+..+.........+...++++.
T Consensus 132 ~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 132 ATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444
No 287
>PLN02939 transferase, transferring glycosyl groups
Probab=33.41 E-value=1.5e+03 Score=31.49 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000644 725 SNGYNEKLAEAENLLE-----LLRND-LNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA 791 (1377)
Q Consensus 725 ieElkeqLeElE~~Le-----~LR~E-l~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e 791 (1377)
..+++.++..++..|. .++.+ ++++|.++..++..+++. +.++..-..-.+..+...+..|...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 326 NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS---DHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred chHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443 23332 356778888888888888 8888888888888888888887664
No 288
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=5.8e+02 Score=26.62 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhh
Q 000644 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKEL 423 (1377)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~ 423 (1377)
+...-++|+.+++.+..+-..+..++.++.+....+.++...
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556888888888988888889888888887666666443
No 289
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.96 E-value=1.9e+02 Score=26.94 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000644 540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1377)
Q Consensus 540 eekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLE 589 (1377)
..++..|...+.-.+..+..++.-+..-+..|..|+..+..+..+++.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444455444444555555555555555555555555555554444
No 290
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.91 E-value=7.5e+02 Score=30.82 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 502 RELEPRFIAAEQRSVELEQQLNLV 525 (1377)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~el 525 (1377)
.-+...+.+..+++..||.|+|++
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555666677777777777664
No 291
>PF14992 TMCO5: TMCO5 family
Probab=32.71 E-value=9.1e+02 Score=28.71 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHH
Q 000644 976 QRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLT 1055 (1377)
Q Consensus 976 ~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~ 1055 (1377)
+++-.|..|=-|+++.|++|.+++...+.-...++..- +.+..+.+.+.. ++..-....+|.
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e-----------~e~~~~~~~e~~-------l~~le~e~~~LE 76 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSE-----------EEDIISEERETD-------LQELELETAKLE 76 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh-----------HHhhhhhchHHH-------HHHHHhhhHHHh
Q ss_pred HHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHH
Q 000644 1056 EDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSV 1135 (1377)
Q Consensus 1056 kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~ 1135 (1377)
+.-..+-+.|.+|+.+ .++... + ++-..-+....+......+.++....-..+.++..+-..|.....=..++
T Consensus 77 ~~ne~l~~~~~elq~k----~~e~~~--~-~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq 149 (280)
T PF14992_consen 77 KENEHLSKSVQELQRK----QDEQET--N-VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQ 149 (280)
T ss_pred hhhHhhhhhhhhhhhh----hccccC--C-CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1136 ISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVE 1185 (1377)
Q Consensus 1136 i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae 1185 (1377)
. ..|..|+..+..+.. +.++--|+.++..+.
T Consensus 150 ~------------------~~i~klkE~L~rmE~-ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 150 A------------------NEIKKLKEKLRRMEE-EKEMLLLEKELSKYQ 180 (280)
T ss_pred H------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
No 292
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.63 E-value=1.2e+03 Score=30.98 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000644 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE 1166 (1377)
Q Consensus 1089 ~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e 1166 (1377)
.++.+...+..++..+..+..+......+.......+..++.++.....++...+ ......-.+-++|.++|..|-.
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceE
Confidence 4567777777777788888888888888888887777777777777666666666 2223333344666666655533
No 293
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.32 E-value=1.4e+03 Score=30.89 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHhCCCHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 294 IQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVN 373 (1377)
Q Consensus 294 ~~e~lglsKaiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~ 373 (1377)
+-..+|+|+.|++.-+..+.....-..++=.+|...++.+...+.....+...+..+...+.....++..-..++- ..
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~--~~ 570 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL--EE 570 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4455899999988887666333322222333333333333333333333333333333333333333333222221 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 374 ARESVEAVLKTQEAQVSNVNEELDK 398 (1377)
Q Consensus 374 ~~~~~~ekL~e~eae~~eL~eELe~ 398 (1377)
....+..-+.+...+...+..++..
T Consensus 571 ~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 571 AEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444455555555555555543
No 294
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.09 E-value=7.4e+02 Score=27.50 Aligned_cols=110 Identities=10% Similarity=0.158 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 336 AKEEISALDNLLADAKENLHAKVSELEDIKLKLQEE----------------VNARESVEAVLKTQEAQVSNVNEELDKV 399 (1377)
Q Consensus 336 lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee----------------~~~~~~~~ekL~e~eae~~eL~eELe~l 399 (1377)
.++.--+....+..|...+..|...|.++..++... ......+..++.+-..+-..|..--.-+
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL 86 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444445677788888888888888888877211 1223334444444444444444444445
Q ss_pred HHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhh
Q 000644 400 SKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLL 445 (1377)
Q Consensus 400 ~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~~e~~K~e~~l 445 (1377)
+...+.+......|...+..+......+.++|...+..+...+..+
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555544433
No 295
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.55 E-value=2.2e+02 Score=27.78 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000644 1253 SEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQG 1297 (1377)
Q Consensus 1253 ~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~~~ 1297 (1377)
......+..+...++.++.+|..+...++.+..++.+........
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777777666655543
No 296
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.54 E-value=4.1e+02 Score=25.16 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000644 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLS 544 (1377)
Q Consensus 511 ~Ekk~keLE~Ql~elq~K~~e~erei~eLeekis 544 (1377)
+.++.+..+...+.++..+....++-+.|..++.
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~ 52 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVN 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444444333333333333
No 297
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.37 E-value=4.1e+02 Score=29.58 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=57.2
Q ss_pred hhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHH
Q 000644 1012 RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKK 1091 (1377)
Q Consensus 1012 ~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~ 1091 (1377)
+...++.....++.+...+..++..+..... -|+.-..-..+-.++..+..++..|..+|..+...+. + .+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp---~----~i~ 138 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKYSENDP---E----KIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---H----HHH
Confidence 3344555555677777777777777555544 3444455566667777777777777777753322222 3 344
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 000644 1092 AIEDLTQKLTSEVQGLQTQISAIM 1115 (1377)
Q Consensus 1092 ~~~e~irkLr~~i~~L~~qke~ae 1115 (1377)
.+...+..++..++.++.-++...
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555566666666666666555544
No 298
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.21 E-value=5.3e+02 Score=25.54 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000644 752 RLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1377)
Q Consensus 752 k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1377)
-.+.+...+..+| .....-+.+-.+-.+.+.+..+++..+..+..+.
T Consensus 10 n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 10 NPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555666666 3444556666667777777888888877777776
No 299
>PRK04406 hypothetical protein; Provisional
Probab=31.05 E-value=3.1e+02 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN 582 (1377)
Q Consensus 539 LeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lq 582 (1377)
+..++..|...+.-.+.-+..++.-+-.-+..|..|..++..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333333333333333333333333333333333333
No 300
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.56 E-value=1e+03 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKL 368 (1377)
Q Consensus 334 ~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kl 368 (1377)
..+..+++.++..+...+-.|..+..+...+...+
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555666666666655555555
No 301
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.34 E-value=1.3e+02 Score=36.85 Aligned_cols=52 Identities=17% Similarity=0.449 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000644 384 TQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1377)
Q Consensus 384 e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~ 435 (1377)
.+..++.++.+.+..+......+...+.++...+..+.+.+.+|++..+...
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3455666666666666666666666666666666666667777777666543
No 302
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=5.8e+02 Score=26.61 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000644 1092 AIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1377)
Q Consensus 1092 ~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1377)
.+++....+..+++.|.+|-+..++.+..|
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444444
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.62 E-value=1.2e+03 Score=29.22 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 000644 573 QLELILNQSNTRSSELEEELR 593 (1377)
Q Consensus 573 ~LEsqLk~LqsrireLEEele 593 (1377)
-+...+..-.-|...|++.++
T Consensus 248 ~~~~~LqEEr~R~erLEeqlN 268 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLN 268 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333333444444444444
No 304
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.42 E-value=1.4e+03 Score=29.82 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000644 1155 SEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQREL 1234 (1377)
Q Consensus 1155 ~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el 1234 (1377)
..|......+..+...+..+..+...+..|-..+.+ +..........+.- |-+.|. ++..++
T Consensus 245 ~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e----a~~el~~~~~~le~----------Dp~~L~----~ve~Rl 306 (557)
T COG0497 245 SLLGRALEALEDLSEYDGKLSELAELLEEALYELEE----ASEELRAYLDELEF----------DPNRLE----EVEERL 306 (557)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCC----------CHHHHH----HHHHHH
Confidence 444444555555666677777777777777777766 33322222211111 112333 444888
Q ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000644 1235 QIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1294 (1377)
Q Consensus 1235 ~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~ 1294 (1377)
..++.-...|...+..+ -+....++.=...|.+.......|..+++.+..++..+-...
T Consensus 307 ~~L~~l~RKY~~~~~~l-~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 307 FALKSLARKYGVTIEDL-LEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997777777 777666666666666666666677777777666655444333
No 305
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.36 E-value=1.3e+03 Score=30.95 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 000644 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQ 1001 (1377)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~ 1001 (1377)
..+.+...-++.+...++.+|...|.++..|..+
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444467778888899999999888887754
No 306
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.30 E-value=6.8e+02 Score=29.14 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000644 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1377)
Q Consensus 534 rei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEel 592 (1377)
.-+.-+..+..+.+..+.+++.++......+..++..+..|..+=-.|-.+++.|..=-
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34555667777777778888888888888888888888888887777777888776544
No 307
>PRK10869 recombination and repair protein; Provisional
Probab=29.18 E-value=1.4e+03 Score=29.68 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 000644 1156 EIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQ 1235 (1377)
Q Consensus 1156 eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~ 1235 (1377)
.|..+...+..+...+..+..+...+..+...+.+ +....+.-...+. -|-.. +.+++.+|.
T Consensus 245 ~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~----~~~~l~~~~~~~~----------~dp~~----l~~ie~Rl~ 306 (553)
T PRK10869 245 QLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQE----ASDELRHYLDRLD----------LDPNR----LAELEQRLS 306 (553)
T ss_pred HHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcC----------CCHHH----HHHHHHHHH
Confidence 34444444444556666666666666666666666 3222222111111 01122 233447777
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1236 IAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1295 (1377)
Q Consensus 1236 ~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~~~ 1295 (1377)
.++.-..-|...+..+ ......++.-...+......+..|..++..+.+++...-....
T Consensus 307 ~l~~L~rKyg~~~~~~-~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 307 KQISLARKHHVSPEEL-PQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777775556666 5555555555555566666666666666666666655554444
No 308
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.14 E-value=37 Score=36.91 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.5
Q ss_pred cchHHHHHHHHHHHHHHHHhcc
Q 000644 1353 VMTFKFIIGVALVSVIIGITLG 1374 (1377)
Q Consensus 1353 ~~~~k~~~~va~~s~~~~~~~~ 1374 (1377)
.+++=+|+||++|-|+||+|++
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv~~~C 100 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIVCFCC 100 (179)
T ss_pred eeeeehhhHHHHHHHhHhhhee
Confidence 4777788889988888888874
No 309
>PRK00295 hypothetical protein; Provisional
Probab=29.07 E-value=2.9e+02 Score=25.80 Aligned_cols=31 Identities=6% Similarity=0.238 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 521 QLNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1377)
Q Consensus 521 Ql~elq~K~~e~erei~eLeekiskLq~EL~ 551 (1377)
.+..|+.++...+..|..|...+.+.+..|.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~ 36 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 310
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.90 E-value=1.7e+02 Score=26.41 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHh
Q 000644 98 KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEES 137 (1377)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~ 137 (1377)
++.+||.++.++...+-....++..+.+.+..+++...++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998888888888877777777766443
No 311
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.88 E-value=3e+02 Score=31.34 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=24.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000644 115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQ 154 (1377)
Q Consensus 115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~ 154 (1377)
..+++|....+++.++++.+++..++++-.+....-|..|
T Consensus 148 ~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 148 KLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666665555555554
No 312
>PRK10698 phage shock protein PspA; Provisional
Probab=28.83 E-value=9.1e+02 Score=27.51 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 1140 EAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVETQFKE 1190 (1377)
Q Consensus 1140 e~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e 1190 (1377)
..-|.++.... ..+..|+..+.. +..+...+..|+.+|..++.+.+.
T Consensus 88 r~AL~~K~~~~----~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 88 RAALIEKQKLT----DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566 777777777766 778888888888888888888888
No 313
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=28.37 E-value=41 Score=41.99 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=28.0
Q ss_pred hccCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHH-hcccC
Q 000644 1335 AQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGI-TLGKR 1376 (1377)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~k~~~~va~~s~~~~~-~~~~~ 1376 (1377)
+++++++|.+.....-.-+|+.=..++|+++.+|||. |+|-|
T Consensus 137 ~~~t~~~~~~~~~~~~~~~~al~~~~~v~~l~~lvi~~~~~~r 179 (534)
T KOG3653|consen 137 PEGTPSSPDLATNDGEVLIYALIPLLLVSLLAALVILAFLGYR 179 (534)
T ss_pred CCCCCCCCCcccccCceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555667777777778877776655 77744
No 314
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=28.16 E-value=3.7e+02 Score=28.40 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHH
Q 000644 837 LEGQVKMYEEQLAEAA----------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQ 906 (1377)
Q Consensus 837 lq~qik~~q~~~~ea~----------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~ 906 (1377)
|+-||..++..+.-++ +....|-. +.+-..|.++|+.++-+++++.+.+.++..=+-.--...++.+.
T Consensus 20 Lekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~--~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ 97 (129)
T PF15372_consen 20 LEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV--ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQ 97 (129)
T ss_pred HHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6678888888888877 44555544 55566788999999999999999999887766666677888888
Q ss_pred hHHHHHHHH
Q 000644 907 LKSKVAELQ 915 (1377)
Q Consensus 907 le~~i~~Lq 915 (1377)
|=++|++..
T Consensus 98 ylaEi~~~s 106 (129)
T PF15372_consen 98 YLAEISQTS 106 (129)
T ss_pred HHHHHHhhh
Confidence 888887765
No 315
>PRK02119 hypothetical protein; Provisional
Probab=28.08 E-value=3.3e+02 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1377)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~e 556 (1377)
+++.+..|+.++...+..|..|...+..-+..|..+.+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~q 45 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQ 45 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333333
No 316
>PRK01844 hypothetical protein; Provisional
Probab=27.98 E-value=46 Score=31.45 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=6.8
Q ss_pred HHHHHHHHhcccCC
Q 000644 1364 LVSVIIGITLGKRY 1377 (1377)
Q Consensus 1364 ~~s~~~~~~~~~~~ 1377 (1377)
++.+++|+|++++|
T Consensus 15 i~G~~~Gff~ark~ 28 (72)
T PRK01844 15 VAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555554
No 317
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=27.77 E-value=1.6e+03 Score=30.15 Aligned_cols=25 Identities=4% Similarity=0.303 Sum_probs=15.3
Q ss_pred hhhHHHHHHH------HHHHHHHHHHHHHHh
Q 000644 1220 RNALYEQVIQ------LQRELQIAQTAIAEQ 1244 (1377)
Q Consensus 1220 ~d~l~~~v~~------~~~el~~l~~~I~~y 1244 (1377)
++.|+..+.+ +...+..+-..|...
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~ 590 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASS 590 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 4556666655 666666666666654
No 318
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.60 E-value=6.2e+02 Score=25.17 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000644 716 DEKRKLQDTSNGYNEKLAEAENLLELLR 743 (1377)
Q Consensus 716 k~k~~LE~EieElkeqLeElE~~Le~LR 743 (1377)
..+..++..+..+..++..++..+..++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 319
>PRK10132 hypothetical protein; Provisional
Probab=27.41 E-value=50 Score=33.51 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcccC
Q 000644 1361 GVALVSVIIGITLGKR 1376 (1377)
Q Consensus 1361 ~va~~s~~~~~~~~~~ 1376 (1377)
..|.|.+|||++||+|
T Consensus 92 iaagvG~llG~Ll~RR 107 (108)
T PRK10132 92 TAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3556788999999987
No 320
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.40 E-value=8.2e+02 Score=26.48 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000644 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSR 794 (1377)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~ 794 (1377)
...+.+.+.+-..+....++++...+=.|.++.....+++..-++|..+|-.=..-+--.+...++..+...+-.....+
T Consensus 55 q~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~ 134 (159)
T PF04949_consen 55 QAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTR 134 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556665556666666777777888999999999998888887774322222223344444444444444444444
Q ss_pred hhhhhhhHHH
Q 000644 795 NSELESLHES 804 (1377)
Q Consensus 795 ~~e~~~~~e~ 804 (1377)
-.+|++=.++
T Consensus 135 L~eLv~eSE~ 144 (159)
T PF04949_consen 135 LMELVSESER 144 (159)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 321
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.35 E-value=4.6e+02 Score=26.46 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000644 544 SQLSTALKEVEEEKKQL--HDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1377)
Q Consensus 544 skLq~EL~elE~eLeel--e~kleelq~kIs~LEsqLk~LqsrireLEEele 593 (1377)
......+..++..+..+ ...+..+...+..+.-.+..+..+++.+.+..+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333 333333333334444444444444444444333
No 322
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.12 E-value=6.3e+02 Score=25.09 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000644 509 IAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSEL 588 (1377)
Q Consensus 509 ~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireL 588 (1377)
......+.-|+.-......++.+...-...+...+..+..... .+...-.+|..+...+..|+.-...+....+.|
T Consensus 17 ~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~----~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 17 EATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE----ELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555544444444332 333344455566667777777777777777777
Q ss_pred HHHHH
Q 000644 589 EEELR 593 (1377)
Q Consensus 589 EEele 593 (1377)
+....
T Consensus 93 E~k~k 97 (99)
T PF10046_consen 93 ESKFK 97 (99)
T ss_pred HHHhh
Confidence 76654
No 323
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=27.12 E-value=9.1e+02 Score=26.91 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 000644 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1377)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeek 542 (1377)
..+...+.+++.+|.-||.|++-...=+...+.+......+
T Consensus 60 ~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~ 100 (178)
T PF14073_consen 60 QDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ 100 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555556666666666666555555555444444433
No 324
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.49 E-value=1.2e+03 Score=28.07 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=8.6
Q ss_pred hccchHHHHHHHHHhHHHH
Q 000644 476 ASQRNLELEDIIRASNEAA 494 (1377)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~ 494 (1377)
+|+.-.++-+-|+.++.++
T Consensus 46 Ar~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444445555544444
No 325
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.33 E-value=2.4e+02 Score=27.70 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 000644 1082 TVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNET 1124 (1377)
Q Consensus 1082 TveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~ 1124 (1377)
.+++|+++.+.++.++..+...++.++...+.+.+++++.|..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999998643
No 326
>PRK04325 hypothetical protein; Provisional
Probab=26.21 E-value=3.4e+02 Score=25.80 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 522 LNLVELKSSDSEREVREFSEKLSQLSTAL 550 (1377)
Q Consensus 522 l~elq~K~~e~erei~eLeekiskLq~EL 550 (1377)
+..|+.++...+.-|..|...+..-+..|
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333
No 327
>PF15456 Uds1: Up-regulated During Septation
Probab=25.92 E-value=7.8e+02 Score=25.75 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc--cccchhhh--HHHHHHHhHHHHHHHHHHHHHH
Q 000644 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN--NSSSENEL--LVETNNQLKSKVAELQELLDSA 921 (1377)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~--~~~~~~~~--L~~~~~~le~~i~~Lqe~l~~~ 921 (1377)
.+|++..+.+..|..=++-++..++ +++.++.+=.-+.-+-..-. ..++.... --++...+..+|++|..+|..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555666666655555555555 55555554444333321111 11111111 2345555666777777777777
Q ss_pred hhhHHHHHHHHHhhhccHHHHH
Q 000644 922 ISEKEATGQQLASHMNTVTELT 943 (1377)
Q Consensus 922 ~~e~e~~~e~l~~~~~~~~~L~ 943 (1377)
....-..-.||-.|+..|=.|+
T Consensus 101 e~R~~~~~~rLLeH~AavL~lt 122 (124)
T PF15456_consen 101 ENRLAEVRQRLLEHTAAVLQLT 122 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666667766666665443
No 328
>PRK00736 hypothetical protein; Provisional
Probab=25.92 E-value=3.4e+02 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=12.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000644 522 LNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1377)
Q Consensus 522 l~elq~K~~e~erei~eLeekiskLq~EL~ 551 (1377)
+..|+.++...+.-|..|...+..-+..|.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~ 36 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333333333
No 329
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.87 E-value=5.1e+02 Score=32.80 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhhccccchhhhHHHHHHHhHH
Q 000644 831 SEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE-LQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1377)
Q Consensus 831 ~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~-~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~ 909 (1377)
+.-||+|=+++|.+..++..+....+.|+.|.++++.........+.. +..+..++.. +-..|..+..++.+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~-------~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK-------EIEQLKSERQQLQG 130 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999887755544433322 2232323322 33344455555666
Q ss_pred HHHHHHHHHH
Q 000644 910 KVAELQELLD 919 (1377)
Q Consensus 910 ~i~~Lqe~l~ 919 (1377)
.|++|+..|+
T Consensus 131 ~l~~l~~~l~ 140 (472)
T TIGR03752 131 LIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 330
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.77 E-value=9.7e+02 Score=26.82 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000644 531 DSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1377)
Q Consensus 531 e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~ra~~~r 610 (1377)
.++.++.+....+......|..-+........-.......+..|..-++.....+.....-......++.+...-+...+
T Consensus 71 qLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk 150 (188)
T PF05335_consen 71 QLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAK 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444445555555555555555555555555554444333333333
Q ss_pred hhhHHHHHhH
Q 000644 611 QRSIELEDLF 620 (1377)
Q Consensus 611 qrs~eLeell 620 (1377)
.|...|...+
T Consensus 151 ~Rve~L~~QL 160 (188)
T PF05335_consen 151 RRVEELQRQL 160 (188)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 331
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.75 E-value=1.1e+03 Score=27.56 Aligned_cols=143 Identities=15% Similarity=0.234 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhhhhchHHHHHHHhhHHHHhhhhHHHHHHhccch---------HHHHHHHHHhHHHHHHHHHHHhhh---
Q 000644 437 NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN---------LELEDIIRASNEAAEEAKSQLREL--- 504 (1377)
Q Consensus 437 e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~---------~EL~~qi~~~~~~~Ek~k~~l~~l--- 504 (1377)
-|+++|+ |+....-.+-+....---.+..+|--. .-|-..+.+-+.+++.+-..|...
T Consensus 137 rlA~kEQ----------Emqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFT 206 (330)
T KOG2991|consen 137 RLATKEQ----------EMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFT 206 (330)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
Confidence 5677777 777766666555544444444333322 223333333444444443333000
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 505 ---EPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKL-------SQLSTALKEVEEEKKQLHDQMNDYKDKITQL 574 (1377)
Q Consensus 505 ---~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeki-------skLq~EL~elE~eLeele~kleelq~kIs~L 574 (1377)
..++ -+=.+|..|-+...++-... +++.|..|...+ ..++.....+..-+.++...++..+..|--|
T Consensus 207 PdS~tGK-~LMAKCR~L~qENeElG~q~--s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliL 283 (330)
T KOG2991|consen 207 PDSKTGK-MLMAKCRTLQQENEELGHQA--SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILIL 283 (330)
T ss_pred CCCcchH-HHHHHHHHHHHHHHHHHhhh--hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 0000 12235566655555554332 234444444443 3333333334444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 000644 575 ELILNQSNTRSSELEEEL 592 (1377)
Q Consensus 575 EsqLk~LqsrireLEEel 592 (1377)
+.+++.-..+|..|...+
T Consensus 284 Qq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 284 QQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 332
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.74 E-value=1.2e+03 Score=27.69 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 326 LDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEA 405 (1377)
Q Consensus 326 l~~~K~~~~~lke~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~ 405 (1377)
+......+..++..+..+...-..|..+|+++..++.....++.-=+..+..-.+....++.+++.+-...-..=.+..+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344445555555556666666777777788888877777775445555556666666666666665555555555566
Q ss_pred HHHHHHHhH
Q 000644 406 LEAAMADLT 414 (1377)
Q Consensus 406 lE~~i~dLe 414 (1377)
++.++++..
T Consensus 251 Le~qle~~~ 259 (267)
T PF10234_consen 251 LEHQLEEYN 259 (267)
T ss_pred HHHHHHHHH
Confidence 666555544
No 333
>PF15102 TMEM154: TMEM154 protein family
Probab=25.65 E-value=38 Score=36.06 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 000644 1358 FIIGVALVSVIIGITLGKR 1376 (1377)
Q Consensus 1358 ~~~~va~~s~~~~~~~~~~ 1376 (1377)
+.|++.|++|||+||..||
T Consensus 66 VLLvlLLl~vV~lv~~~kR 84 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKR 84 (146)
T ss_pred HHHHHHHHHHHHheeEEee
Confidence 4455678899999988876
No 334
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=25.64 E-value=1.3e+03 Score=28.41 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-H
Q 000644 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE-K 1167 (1377)
Q Consensus 1089 ~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e-~ 1167 (1377)
+++.+.|.-+...+++.+|..+++..--+-+.......-..+- ----.+++.|.+-+++. ..++-++...-+ +
T Consensus 350 HQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKn--AhrEEmeRELeKsqSvn----sdveaLRrQyleel 423 (593)
T KOG4807|consen 350 HQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKN--AHREEMERELEKSQSVN----SDVEALRRQYLEEL 423 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHhhhccc----cChHHHHHHHHHHH
Confidence 6677778888888888888887776544433322111111111 11234566666655555 777777766544 7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000644 1168 FALETRIKELEELLVN 1183 (1377)
Q Consensus 1168 ~~le~~ie~L~~~i~~ 1183 (1377)
+.++.+++-|..+...
T Consensus 424 qsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 424 QSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776665543
No 335
>PRK02119 hypothetical protein; Provisional
Probab=25.49 E-value=4.1e+02 Score=25.21 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1377)
Q Consensus 541 ekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~L 581 (1377)
.++..|...+.=.+..+..++.-+-.-+..|..|+.++..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 336
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.27 E-value=3.7e+02 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTAL 550 (1377)
Q Consensus 519 E~Ql~elq~K~~e~erei~eLeekiskLq~EL 550 (1377)
++.+..|+.++...+.-|..|...+...+..|
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I 38 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEM 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333
No 337
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.25 E-value=1.5e+03 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1256 EAALKSSLEELGAKNKEAALLQNKVAELEQKLQQ 1289 (1377)
Q Consensus 1256 e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~d 1289 (1377)
...|-.++..+......|..|+.+|..+-..++-
T Consensus 480 ierivrLQ~a~arknekiefLe~h~~qlveevQK 513 (613)
T KOG0992|consen 480 IERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQK 513 (613)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 3556667777888888888888888888777763
No 338
>PF15294 Leu_zip: Leucine zipper
Probab=25.11 E-value=1.2e+03 Score=27.70 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000644 1089 SKKAIEDLTQKLTSEVQ 1105 (1377)
Q Consensus 1089 ~q~~~~e~irkLr~~i~ 1105 (1377)
-.+..|++|..||+++.
T Consensus 261 ~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 261 ILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHhccHHHHHHHHHhc
Confidence 34577888888887764
No 339
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=25.07 E-value=1e+03 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=33.9
Q ss_pred hhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhh
Q 000644 244 RLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEI 291 (1377)
Q Consensus 244 k~~~~~~~~~KtlE~ql~~l~ee~~~~~~~~~~~~k~ee~ls~~~~eL 291 (1377)
.++...-+.|+++|.....|+.+++.--+.+.....-..+++...+++
T Consensus 12 ~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l 59 (211)
T cd07588 12 EVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKEL 59 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677889999999999998888888877655445555544433
No 340
>PRK10404 hypothetical protein; Provisional
Probab=25.04 E-value=61 Score=32.54 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcccC
Q 000644 1361 GVALVSVIIGITLGKR 1376 (1377)
Q Consensus 1361 ~va~~s~~~~~~~~~~ 1376 (1377)
..|.|.+|||++||+|
T Consensus 86 iaagvGlllG~Ll~RR 101 (101)
T PRK10404 86 VGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3555788999999987
No 341
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.80 E-value=9.2e+02 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000644 651 LEEQISKLEKKC 662 (1377)
Q Consensus 651 LEeqis~LEKK~ 662 (1377)
+...+..++.++
T Consensus 157 l~~~i~~l~rk~ 168 (177)
T PF13870_consen 157 LRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 342
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.72 E-value=4.8e+02 Score=23.80 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000644 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1377)
Q Consensus 559 ele~kleelq~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1377)
.+...+..+..++.+|...++.+...+....++......+|..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444444444444444443
No 343
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.59 E-value=6.9e+02 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1377)
Q Consensus 532 ~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~LqsrireLEE 590 (1377)
...++..++.++.++..++......+-.+......+......|...+...+.-+..|.+
T Consensus 22 k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 22 KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444455555555444444455444445554455554544444444444444
No 344
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.53 E-value=2e+03 Score=30.03 Aligned_cols=99 Identities=23% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000644 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRG 1246 (1377)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y~~ 1246 (1377)
+..-+.+|.+|..........|.+ ++.+.+-.+..|..-- ..-...| +-|......
T Consensus 957 le~re~eikeLkk~aKmkqeelSe----~qvRldmaEkkLss~~----------k~~~h~v----~~~~ek~ee------ 1012 (1243)
T KOG0971|consen 957 LEDRETEIKELKKSAKMKQEELSE----AQVRLDLAEKKLSSAA----------KDADHRV----EKVQEKLEE------ 1012 (1243)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHhhhhh----------hhHhHHH----HHHHHHHHH------
Confidence 566666777777777777777777 7777777776666433 1111112 111111111
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 1247 ADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAK 1293 (1377)
Q Consensus 1247 ~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~ 1293 (1377)
...-+.+.=+.+.+.|+.+..+|+.++.+-.++.++++.-.++
T Consensus 1013 ----~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k 1055 (1243)
T KOG0971|consen 1013 ----TQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKK 1055 (1243)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccc
Confidence 1122344556677779999999999999999999999864433
No 345
>PRK04325 hypothetical protein; Provisional
Probab=24.27 E-value=4.2e+02 Score=25.14 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 542 KLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1377)
Q Consensus 542 kiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsri 585 (1377)
++..|...+.=.+.-+..++.-+..-+..|..|+.++..+..++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 346
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.19 E-value=2.1e+03 Score=30.15 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 634 VNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNA 713 (1377)
Q Consensus 634 leelEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~e 713 (1377)
+.+.....+.++..+..+...+..++.+...++....++..++.....++......+..+-..+.........+...+..
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666667777777766666666666666666666666655555555555554444444444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000644 714 AADEKRKLQDTSNGYNEKLAEAENLLE 740 (1377)
Q Consensus 714 lek~k~~LE~EieElkeqLeElE~~Le 740 (1377)
+...-...+..+...+.-+..+++.|.
T Consensus 330 lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 330 LKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444555555555555555555554
No 347
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.07 E-value=1.4e+03 Score=28.65 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 000644 339 EISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418 (1377)
Q Consensus 339 ~~~~le~~l~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dLes~i~ 418 (1377)
.+...+..+.+++..++........+.++..-.-+.-......+...+..+..|+.+...++..+-..+..-.-+...+.
T Consensus 7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~ 86 (459)
T KOG0288|consen 7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVL 86 (459)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777777777777666655556666666777777777888888777777777665555555555554
Q ss_pred HhHhhhHHHHHHHhhh
Q 000644 419 RMKELCSELEEKLRNS 434 (1377)
Q Consensus 419 eL~e~~eeLEeeL~~~ 434 (1377)
..+...-.+..+++.+
T Consensus 87 ~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 87 IAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 348
>PRK00295 hypothetical protein; Provisional
Probab=23.79 E-value=4.8e+02 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 545 QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1377)
Q Consensus 545 kLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsri 585 (1377)
.|...+.-.+.-+..++.-+..-+..|..|+.++..+..++
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 349
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=23.48 E-value=1.2e+03 Score=27.24 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=44.9
Q ss_pred hhHHHHHHhccch-HHHHHHHHHhHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000644 468 ETGAAAATASQRN-LELEDIIRASNEAAEEAKSQL-------RELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1377)
Q Consensus 468 ~he~~~~~~~qk~-~EL~~qi~~~~~~~Ek~k~~l-------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1377)
..++.++.+.-+. .=|++-|++++..-++.|.++ ..|-..++.-+....++-+|+..+.....=..
T Consensus 90 Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~ 163 (330)
T KOG2991|consen 90 QYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV 163 (330)
T ss_pred HHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 4455555554444 778999999999999999998 44555566666666666666666655554444
No 350
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.44 E-value=69 Score=31.23 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 000644 1356 FKFIIGVALVSVIIGITLGKR 1376 (1377)
Q Consensus 1356 ~k~~~~va~~s~~~~~~~~~~ 1376 (1377)
++-|...|.|.+|||++|++|
T Consensus 74 ~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 74 WQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
No 351
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.32 E-value=5.1e+02 Score=33.04 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000644 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1377)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dLes~i~eL~e~~eeLEeeL~~~~ 435 (1377)
.+..+..-+.....+...+...+.++...+..+...+..|+.+|....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555556666666666666555555555555443
No 352
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.18 E-value=7.5e+02 Score=24.58 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000644 1194 NVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ 1244 (1377)
Q Consensus 1194 ~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y 1244 (1377)
++-.....+-..+.+.+ ..+...+ ..++..+..+..|
T Consensus 28 ~mN~~~~~kY~~~~~~~----------~~l~~~~----~~l~~k~~~l~~~ 64 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIA----------AGLEKNL----EDLNQKYEELQPY 64 (99)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHHHHHHHHHH
Confidence 34445555555566666 6666666 5555555554443
No 353
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.99 E-value=5.6e+02 Score=28.28 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000644 527 LKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQM--NDYKDKITQLELILNQSNTRSSELEE 590 (1377)
Q Consensus 527 ~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kl--eelq~kIs~LEsqLk~LqsrireLEE 590 (1377)
..+.-+...+..|.++++.++.....++.++.++.+.+ .+++..|..|.........|+..+..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 354
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.62 E-value=5e+02 Score=29.72 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=32.9
Q ss_pred ccchhhhHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000644 893 SSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1377)
Q Consensus 893 ~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1377)
+.+++..+.+....|+.++...+.+|+.++....++-.+...-..-.++|.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344556666666666666666666666666666666666666666666666655
No 355
>PRK00846 hypothetical protein; Provisional
Probab=22.29 E-value=4.4e+02 Score=25.46 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1377)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~e 556 (1377)
+++.+..|+.++...+.-|..|...+...+..|..+...
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~q 49 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333
No 356
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.23 E-value=6.5e+02 Score=27.57 Aligned_cols=122 Identities=16% Similarity=0.271 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHHhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000644 784 QTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYALL---- 858 (1377)
Q Consensus 784 ~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~-~l~k~L~~lq~qik~~q~~~~ea~~k~~~l---- 858 (1377)
.+.-|-+.+.+++.+.+.- |+-+.+||--.-|- --|--+ =|.|+..+.-|.+.=+..
T Consensus 16 AEtVLrhIReG~TQL~AFe------------Evg~~L~RTsAACGFRWNs~V------RkqY~~~i~~AKkqRk~~~~~~ 77 (161)
T TIGR02894 16 AETVLRHIREGSTQLSAFE------------EVGRALNRTAAACGFRWNAYV------RKQYEEAIELAKKQRKELKREA 77 (161)
T ss_pred HHHHHHHHhcchHHHHHHH------------HHHHHHcccHHHhcchHHHHH------HHHHHHHHHHHHHHHhccccCc
Confidence 4455666777777776322 24445555444332 001111 145666655555111111
Q ss_pred ----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhHHHHHHHhHHHHHHHHHHHHHHhh
Q 000644 859 ----KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAIS 923 (1377)
Q Consensus 859 ----~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~~~~le~~i~~Lqe~l~~~~~ 923 (1377)
-..+..|+..+...-.....++.+...+..++..+...|..|..++..|..++..++++......
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13455555555544444555555555555555555555555555555555555555555555443
No 357
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=22.21 E-value=38 Score=26.21 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=8.1
Q ss_pred HHHHHHHHHHh
Q 000644 1362 VALVSVIIGIT 1372 (1377)
Q Consensus 1362 va~~s~~~~~~ 1372 (1377)
|.++||+||..
T Consensus 14 vGv~SV~ig~~ 24 (27)
T PF04650_consen 14 VGVASVLIGTL 24 (27)
T ss_pred cchhHHHHHHH
Confidence 45678899884
No 358
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.20 E-value=1.8e+03 Score=28.54 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 000644 655 ISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAE 734 (1377)
Q Consensus 655 is~LEKK~k~~eqel~el~~~l~kLk~ELE~~eke~relEt~L~e~~ek~reL~eql~elek~k~~LE~EieElkeqLeE 734 (1377)
+..+.+.+.....++..+..+..+|-..|-.+.+.++.+.....+....+.........++.....++....++-.-+.|
T Consensus 214 ~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 214 ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444433333333333333333333333333333333445555555555555555666
Q ss_pred HHHHHHHHHH
Q 000644 735 AENLLELLRN 744 (1377)
Q Consensus 735 lE~~Le~LR~ 744 (1377)
++..|..+|.
T Consensus 294 aeeELk~lrs 303 (596)
T KOG4360|consen 294 AEEELKCLRS 303 (596)
T ss_pred HHHHHHhhcc
Confidence 6666664443
No 359
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.19 E-value=4.2e+02 Score=33.53 Aligned_cols=79 Identities=19% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHHhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000644 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1377)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1377)
.|.++-+.+.++..++ ......|.+|..+-..+..+-.++..+...+ ....+ .+++.+++++......++
T Consensus 60 TlrTlva~~k~~r~~~-------~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a-v~~~~--~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 60 TLRTLVAEVKELRKRL-------AKLISENEALKAENERLQKREQSIDQQIQQA-VQSET--QELTKEIEQLKSERQQLQ 129 (472)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHhhh--HHHHHHHHHHHHHHHHHH
Confidence 4445555555555553 3344444444444444444444444443211 11222 334444444444444444
Q ss_pred HHHHhHHHH
Q 000644 1102 SEVQGLQTQ 1110 (1377)
Q Consensus 1102 ~~i~~L~~q 1110 (1377)
..+.+|+++
T Consensus 130 ~~l~~l~~~ 138 (472)
T TIGR03752 130 GLIDQLQRR 138 (472)
T ss_pred HHHHHHHHH
Confidence 444444433
No 360
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.18 E-value=4.8e+02 Score=24.65 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 000644 543 LSQLSTAL 550 (1377)
Q Consensus 543 iskLq~EL 550 (1377)
+..|...+
T Consensus 10 i~~LE~~l 17 (72)
T PRK02793 10 LAELESRL 17 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 361
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.18 E-value=9.8e+02 Score=26.93 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 504 LEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1377)
Q Consensus 504 l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk 579 (1377)
|+..+.-.+..+..-+...+.|+..++-...+-......-...+.+...++.+-...+.++..++..|..|+.+.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 362
>PRK00736 hypothetical protein; Provisional
Probab=21.95 E-value=5e+02 Score=24.27 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000644 543 LSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1377)
Q Consensus 543 iskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsri 585 (1377)
+..|...+.-.+.-+..++.-+-.-+..|..|+.++..+..++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333444333333333
No 363
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.80 E-value=8.4e+02 Score=24.66 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000644 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN 582 (1377)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lq 582 (1377)
.|...+.........+...-..+..+-..+...+..+..-+................-..........|..|...+..+.
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000644 583 TRSSELEEELRITK 596 (1377)
Q Consensus 583 srireLEEele~L~ 596 (1377)
+.+..+++.+..+.
T Consensus 95 ~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 95 SEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHH
No 364
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.73 E-value=1.1e+03 Score=25.84 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKK 558 (1377)
Q Consensus 510 ~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLe 558 (1377)
.+...+..+...+.++...+...-.++..+.......+..+..+.+...
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555566666677777777777777777776666666666666553
No 365
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.70 E-value=6.8e+02 Score=27.03 Aligned_cols=28 Identities=0% Similarity=0.327 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 000644 514 RSVELEQQLNLVELKSSDSEREVREFSE 541 (1377)
Q Consensus 514 k~keLE~Ql~elq~K~~e~erei~eLee 541 (1377)
++..+..++..+..++.+...+|..|..
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444433
No 366
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=21.68 E-value=51 Score=38.19 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.2
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhcc
Q 000644 1347 RADASPVMTFKFIIGVALVSVIIGITLG 1374 (1377)
Q Consensus 1347 ~~~~~~~~~~k~~~~va~~s~~~~~~~~ 1374 (1377)
+..+|-|=+++-+.|+.+|++|+|+-||
T Consensus 64 ~~~~W~~P~v~~~~G~~~v~liLgl~ig 91 (279)
T PF07271_consen 64 TEQSWFIPVVGGSAGLLAVALILGLAIG 91 (279)
T ss_pred ccccceeeeccchhhHHHHHHHHHHhhc
Confidence 4567888889999999999999999998
No 367
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.24 E-value=1.5e+03 Score=27.32 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=17.9
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHH
Q 000644 976 QRDIEANNLNEKVSVLEGQIKSYEE 1000 (1377)
Q Consensus 976 ~~e~~~keL~~kl~~~e~~~~~~~~ 1000 (1377)
-++.++..++.+|.++|..+..|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777653
No 368
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.18 E-value=3.9e+02 Score=24.52 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--Hh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1221 NALYEQVIQLQRELQIAQTAIA--EQ-RGADSQKDSEREAALKSSLEELGAKNKEAALL 1276 (1377)
Q Consensus 1221 d~l~~~v~~~~~el~~l~~~I~--~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l 1276 (1377)
..|...+..++.++..+..-+. +| ...|+..-..+...+..+..++..+...+..|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555666666666666 57 88888885677788888888888887777654
No 369
>PRK00846 hypothetical protein; Provisional
Probab=21.09 E-value=5.7e+02 Score=24.69 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000644 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1377)
Q Consensus 541 ekiskLq~EL~elE~eLeele~kleelq~kIs~LEsqLk~Lqsrire 587 (1377)
.++..|...+.=.+.-+..++.-+...+..|..|..++..+..+++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333334444444444444444444444444444433
No 370
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.03 E-value=9.9e+02 Score=28.19 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHHH
Q 000644 107 ERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE----AKRKE 182 (1377)
Q Consensus 107 ~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~----~~~~~ 182 (1377)
..+..++......+...+.++...+.+.+.++.....++.........+-.-+.-|......|.+.++.+. ....+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--HHhhhhhHHHHHHHHHHHHHHHHHH
Q 000644 183 LAEVK--EAFDGLSLEIEQSRSRLQELEHKLQ 212 (1377)
Q Consensus 183 L~~~k--e~~e~~~~~l~~~kkk~q~~~~~L~ 212 (1377)
+...+ +...=+...+...-..|+..+..|+
T Consensus 266 ~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 266 LLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 371
>PRK13734 conjugal transfer pilin subunit TraA; Provisional
Probab=20.89 E-value=55 Score=33.11 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000644 1355 TFKFIIGVALVSVIIGI 1371 (1377)
Q Consensus 1355 ~~k~~~~va~~s~~~~~ 1371 (1377)
++||.+|+|+|||++-|
T Consensus 97 Nl~~L~G~aiv~VF~~V 113 (120)
T PRK13734 97 NVKFLAGFAIISVFIAV 113 (120)
T ss_pred hHHHHHhhHHhhhhhcc
Confidence 68999999999999866
No 372
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.75 E-value=1.9e+03 Score=28.44 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000644 630 TGKRVNELELLLEAEKYRIQ----ELEEQISKLEKKCE-EAEAGSKQYSDKVCELASELEAFQARTS 691 (1377)
Q Consensus 630 ~~~~leelEe~LE~~K~Rlq----ELEeqis~LEKK~k-~~eqel~el~~~l~kLk~ELE~~eke~r 691 (1377)
++..+..+...+++.+.+.. .+...++.+.|+.- .-+.....++..+.++...++..-+.+.
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK 733 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVK 733 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433332 34444444444441 1133333444444444444444433333
No 373
>PHA01750 hypothetical protein
Probab=20.67 E-value=3e+02 Score=25.72 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000644 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKLQ 1288 (1377)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~ 1288 (1377)
...++.++..+|..++..++.++.+|.++.++++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5577888888899999999999999999988875
No 374
>PRK01844 hypothetical protein; Provisional
Probab=20.56 E-value=49 Score=31.23 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHhcc
Q 000644 1354 MTFKFIIGVALVSVIIGITLG 1374 (1377)
Q Consensus 1354 ~~~k~~~~va~~s~~~~~~~~ 1374 (1377)
|+.=+++++.+|.+|+|+++|
T Consensus 1 M~~~~~I~l~I~~li~G~~~G 21 (72)
T PRK01844 1 MPIWLGILVGVVALVAGVALG 21 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 334466778889999999988
No 375
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.07 E-value=95 Score=26.58 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHH-hccc
Q 000644 1358 FIIGVALVSVIIGI-TLGK 1375 (1377)
Q Consensus 1358 ~~~~va~~s~~~~~-~~~~ 1375 (1377)
|+..|+|+.+|||| +||+
T Consensus 27 ~LT~~gll~~lv~la~l~r 45 (45)
T PF11688_consen 27 GLTAVGLLGFLVGLAYLTR 45 (45)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 56678999999999 6664
No 376
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.02 E-value=7.9e+02 Score=23.63 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000644 521 QLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ--LHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1377)
Q Consensus 521 Ql~elq~K~~e~erei~eLeekiskLq~EL~elE~eLee--le~kleelq~kIs~LEsqLk~LqsrireLEEele~L 595 (1377)
-+..+..++.++..--..+...+..+...|.....-... .-.... |..++..+...+..+..++..+......+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444555555555555444442111 111222 66666666666666666666666655443
Done!