Query 000645
Match_columns 1377
No_of_seqs 577 out of 2244
Neff 5.7
Searched_HMMs 46136
Date Mon Apr 1 21:19:27 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1114 Tripeptidyl peptidase 100.0 2E-305 5E-310 2661.3 98.9 1245 80-1377 44-1304(1304)
2 cd04857 Peptidases_S8_Tripepti 100.0 3E-94 6.5E-99 845.7 40.5 412 95-578 1-412 (412)
3 PF12580 TPPII: Tripeptidyl pe 100.0 4.7E-68 1E-72 563.6 10.1 192 877-1071 1-194 (194)
4 PTZ00262 subtilisin-like prote 100.0 3.6E-42 7.9E-47 417.0 27.9 281 286-606 317-619 (639)
5 cd07497 Peptidases_S8_14 Pepti 100.0 2.1E-41 4.4E-46 390.4 25.0 278 285-575 2-311 (311)
6 cd05562 Peptidases_S53_like Pe 100.0 8.9E-41 1.9E-45 379.3 27.5 266 283-600 3-274 (275)
7 cd07479 Peptidases_S8_SKI-1_li 100.0 5.7E-41 1.2E-45 377.1 25.4 241 285-579 8-254 (255)
8 cd07478 Peptidases_S8_CspA-lik 100.0 6E-41 1.3E-45 404.3 27.1 229 347-591 75-455 (455)
9 cd07475 Peptidases_S8_C5a_Pept 100.0 1.5E-40 3.2E-45 388.2 27.7 300 285-600 11-346 (346)
10 cd05561 Peptidases_S8_4 Peptid 100.0 3.5E-39 7.6E-44 359.3 26.3 238 287-591 1-239 (239)
11 cd07483 Peptidases_S8_Subtilis 100.0 7.2E-39 1.6E-43 366.6 26.7 260 286-576 2-291 (291)
12 cd07474 Peptidases_S8_subtilis 100.0 1.2E-38 2.6E-43 363.6 26.3 283 285-598 2-295 (295)
13 cd07476 Peptidases_S8_thiazoli 100.0 1.6E-38 3.6E-43 359.5 26.6 245 286-581 11-255 (267)
14 cd07489 Peptidases_S8_5 Peptid 100.0 2.4E-38 5.2E-43 365.1 26.3 277 285-603 13-301 (312)
15 cd07481 Peptidases_S8_Bacillop 100.0 6.5E-38 1.4E-42 353.3 24.6 248 285-576 2-264 (264)
16 cd07493 Peptidases_S8_9 Peptid 100.0 7.2E-38 1.6E-42 352.3 23.5 249 286-576 1-261 (261)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2E-37 4.3E-42 347.2 25.2 247 285-576 2-264 (264)
18 cd04847 Peptidases_S8_Subtilis 100.0 1.4E-37 3E-42 355.4 24.2 257 288-576 2-291 (291)
19 cd07496 Peptidases_S8_13 Pepti 100.0 9.6E-37 2.1E-41 347.5 26.4 249 286-574 1-285 (285)
20 cd07498 Peptidases_S8_15 Pepti 100.0 2E-36 4.3E-41 336.1 26.2 234 287-574 1-242 (242)
21 PF00082 Peptidase_S8: Subtila 100.0 4.7E-37 1E-41 346.8 21.0 272 288-600 1-282 (282)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.9E-36 8.4E-41 335.8 25.9 240 286-576 1-254 (254)
23 cd07485 Peptidases_S8_Fervidol 100.0 1.7E-35 3.6E-40 335.4 26.4 244 286-574 11-273 (273)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 1.1E-35 2.5E-40 338.6 24.8 272 284-576 6-293 (293)
25 cd07484 Peptidases_S8_Thermita 100.0 1.8E-35 4E-40 332.0 25.2 233 285-579 28-260 (260)
26 cd07477 Peptidases_S8_Subtilis 100.0 2.7E-35 5.9E-40 323.6 25.3 229 286-574 1-229 (229)
27 cd07491 Peptidases_S8_7 Peptid 100.0 2.7E-35 5.9E-40 329.7 23.5 222 285-557 3-232 (247)
28 cd04843 Peptidases_S8_11 Pepti 100.0 1.6E-35 3.4E-40 336.8 21.2 232 286-576 17-277 (277)
29 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.1E-35 1.3E-39 327.1 25.1 225 286-577 26-255 (255)
30 cd07473 Peptidases_S8_Subtilis 100.0 1.1E-34 2.4E-39 325.1 27.2 250 285-576 2-259 (259)
31 cd07482 Peptidases_S8_Lantibio 100.0 9E-35 2E-39 331.0 25.1 246 286-574 1-294 (294)
32 cd07480 Peptidases_S8_12 Pepti 100.0 1.3E-34 2.7E-39 332.3 24.5 259 284-596 7-296 (297)
33 cd04852 Peptidases_S8_3 Peptid 100.0 1.6E-34 3.4E-39 332.8 24.4 190 344-576 102-307 (307)
34 cd04059 Peptidases_S8_Protein_ 100.0 4.9E-35 1.1E-39 334.5 18.2 270 255-576 4-297 (297)
35 cd07494 Peptidases_S8_10 Pepti 100.0 1.7E-33 3.6E-38 323.4 22.3 197 346-581 57-288 (298)
36 cd07492 Peptidases_S8_8 Peptid 100.0 6.8E-33 1.5E-37 304.4 24.5 222 286-576 1-222 (222)
37 cd04848 Peptidases_S8_Autotran 100.0 8.5E-33 1.9E-37 308.7 25.3 245 285-576 3-267 (267)
38 KOG1153 Subtilisin-related pro 100.0 2.6E-32 5.6E-37 311.7 14.1 229 284-576 218-461 (501)
39 KOG4266 Subtilisin kexin isozy 100.0 1.7E-31 3.7E-36 309.6 13.5 270 281-607 193-472 (1033)
40 cd07488 Peptidases_S8_2 Peptid 100.0 2.9E-30 6.3E-35 289.1 19.8 196 346-574 33-246 (247)
41 cd00306 Peptidases_S8_S53 Pept 100.0 2.9E-28 6.3E-33 265.1 25.6 198 346-574 40-241 (241)
42 KOG3526 Subtilisin-like propro 99.9 4.5E-23 9.7E-28 229.9 6.8 318 254-616 125-472 (629)
43 COG1404 AprE Subtilisin-like s 99.9 1.2E-20 2.7E-25 226.2 20.3 266 285-600 142-420 (508)
44 cd04056 Peptidases_S53 Peptida 99.7 7.6E-16 1.7E-20 182.1 19.1 179 369-557 82-300 (361)
45 PF12583 TPPII_N: Tripeptidyl 99.4 5E-13 1.1E-17 132.8 5.5 58 1123-1186 67-124 (139)
46 KOG3525 Subtilisin-like propro 98.6 8.5E-08 1.8E-12 115.9 8.4 280 286-609 34-333 (431)
47 COG4934 Predicted protease [Po 98.0 1.6E-05 3.4E-10 103.4 10.5 176 371-556 289-498 (1174)
48 cd04852 Peptidases_S8_3 Peptid 96.5 0.0018 3.9E-08 75.5 3.6 36 102-137 12-50 (307)
49 cd04842 Peptidases_S8_Kp43_pro 96.0 0.0075 1.6E-07 69.4 5.4 44 112-155 2-50 (293)
50 PTZ00262 subtilisin-like prote 95.7 0.0071 1.5E-07 76.2 3.4 36 101-136 300-335 (639)
51 cd07480 Peptidases_S8_12 Pepti 95.5 0.008 1.7E-07 69.9 2.6 39 112-156 3-41 (297)
52 cd07479 Peptidases_S8_SKI-1_li 95.3 0.01 2.2E-07 67.7 2.7 24 113-136 4-27 (255)
53 cd07489 Peptidases_S8_5 Peptid 95.2 0.016 3.6E-07 67.7 4.3 42 113-154 9-50 (312)
54 cd04077 Peptidases_S8_PCSK9_Pr 95.1 0.016 3.4E-07 65.7 3.6 26 111-136 19-44 (255)
55 cd07475 Peptidases_S8_C5a_Pept 94.8 0.015 3.2E-07 68.9 2.2 25 113-137 7-31 (346)
56 cd07485 Peptidases_S8_Fervidol 94.7 0.019 4E-07 66.0 2.6 26 113-138 6-31 (273)
57 cd04059 Peptidases_S8_Protein_ 94.5 0.022 4.7E-07 65.9 2.8 38 98-137 22-59 (297)
58 cd07497 Peptidases_S8_14 Pepti 94.5 0.018 3.8E-07 67.9 1.8 21 116-136 1-21 (311)
59 cd07474 Peptidases_S8_subtilis 94.1 0.047 1E-06 63.0 4.4 39 116-154 1-39 (295)
60 cd07481 Peptidases_S8_Bacillop 94.0 0.025 5.5E-07 64.5 1.9 22 116-137 1-22 (264)
61 cd07483 Peptidases_S8_Subtilis 93.9 0.027 6E-07 65.5 1.9 20 117-136 1-20 (291)
62 cd07491 Peptidases_S8_7 Peptid 93.8 0.032 6.9E-07 63.6 2.0 71 375-453 101-174 (247)
63 cd07484 Peptidases_S8_Thermita 93.7 0.052 1.1E-06 61.6 3.7 33 100-135 14-46 (260)
64 cd07476 Peptidases_S8_thiazoli 93.4 0.043 9.4E-07 63.2 2.3 24 113-136 6-29 (267)
65 cd04843 Peptidases_S8_11 Pepti 93.3 0.063 1.4E-06 62.2 3.4 34 102-136 2-35 (277)
66 cd04848 Peptidases_S8_Autotran 93.0 0.06 1.3E-06 60.6 2.6 23 115-137 1-23 (267)
67 cd07494 Peptidases_S8_10 Pepti 92.7 0.08 1.7E-06 62.0 3.2 32 102-136 8-39 (298)
68 cd07487 Peptidases_S8_1 Peptid 92.4 0.077 1.7E-06 60.0 2.4 22 116-137 1-22 (264)
69 cd07473 Peptidases_S8_Subtilis 92.1 0.078 1.7E-06 60.0 2.2 20 117-136 2-21 (259)
70 cd05562 Peptidases_S53_like Pe 92.0 0.1 2.2E-06 60.4 2.9 22 113-134 1-22 (275)
71 cd07490 Peptidases_S8_6 Peptid 91.8 0.1 2.3E-06 58.8 2.7 30 118-153 1-30 (254)
72 cd07492 Peptidases_S8_8 Peptid 90.2 0.2 4.3E-06 55.6 2.9 21 118-138 1-21 (222)
73 cd07496 Peptidases_S8_13 Pepti 89.9 0.17 3.6E-06 58.6 2.0 20 118-137 1-20 (285)
74 cd07493 Peptidases_S8_9 Peptid 87.6 0.48 1E-05 54.0 3.7 37 118-154 1-38 (261)
75 cd05561 Peptidases_S8_4 Peptid 85.2 0.5 1.1E-05 53.5 2.2 18 119-136 1-18 (239)
76 cd07477 Peptidases_S8_Subtilis 83.7 0.56 1.2E-05 52.0 1.7 19 118-136 1-19 (229)
77 cd07482 Peptidases_S8_Lantibio 83.6 0.56 1.2E-05 54.0 1.8 19 118-136 1-19 (294)
78 KOG3526 Subtilisin-like propro 83.5 0.61 1.3E-05 54.7 1.9 25 113-137 157-181 (629)
79 PF06280 DUF1034: Fn3-like dom 83.4 5.7 0.00012 39.8 8.6 94 626-731 10-112 (112)
80 cd07498 Peptidases_S8_15 Pepti 82.8 0.73 1.6E-05 51.7 2.2 19 119-137 1-19 (242)
81 PF12569 NARP1: NMDA receptor- 82.8 26 0.00056 44.6 15.9 188 1134-1356 39-244 (517)
82 cd04847 Peptidases_S8_Subtilis 81.8 0.72 1.6E-05 53.5 1.8 18 119-136 1-18 (291)
83 PF00082 Peptidase_S8: Subtila 81.4 0.97 2.1E-05 51.5 2.5 34 120-154 1-35 (282)
84 PF04151 PPC: Bacterial pre-pe 75.1 7.1 0.00015 35.7 5.8 57 930-994 4-69 (70)
85 PRK10747 putative protoheme IX 67.2 25 0.00055 42.8 9.9 71 1287-1360 309-381 (398)
86 cd00306 Peptidases_S8_S53 Pept 59.0 5.9 0.00013 43.2 2.1 17 119-135 1-17 (241)
87 TIGR00540 hemY_coli hemY prote 55.9 75 0.0016 38.9 11.1 65 1289-1356 316-386 (409)
88 TIGR02521 type_IV_pilW type IV 54.6 2.8E+02 0.0061 29.2 15.8 71 1288-1361 154-224 (234)
89 KOG4848 Extracellular matrix-a 54.4 81 0.0017 34.8 9.4 76 1130-1227 114-189 (225)
90 COG1404 AprE Subtilisin-like s 52.9 8.1 0.00017 46.9 2.1 27 112-138 137-163 (508)
91 KOG4266 Subtilisin kexin isozy 50.5 12 0.00027 46.9 3.1 32 103-136 189-220 (1033)
92 PRK11788 tetratricopeptide rep 48.5 2.6E+02 0.0056 33.2 13.9 80 1286-1367 197-277 (389)
93 PF07495 Y_Y_Y: Y_Y_Y domain; 37.5 27 0.00058 31.1 2.5 44 967-1010 17-62 (66)
94 PRK11447 cellulose synthase su 37.1 3.3E+02 0.0071 38.3 14.0 35 1300-1334 299-333 (1157)
95 PLN03218 maturation of RBCL 1; 37.0 3.1E+02 0.0068 38.2 13.4 36 1314-1350 764-799 (1060)
96 cd07478 Peptidases_S8_CspA-lik 36.7 18 0.0004 45.1 1.8 23 284-309 3-25 (455)
97 PRK15174 Vi polysaccharide exp 35.4 6.7E+02 0.014 33.0 15.6 64 1132-1208 42-105 (656)
98 TIGR02917 PEP_TPR_lipo putativ 34.6 7.5E+02 0.016 32.2 16.0 29 1156-1184 517-545 (899)
99 PRK12370 invasion protein regu 34.1 7.1E+02 0.015 31.9 15.4 57 1152-1208 275-333 (553)
100 cd04857 Peptidases_S8_Tripepti 33.9 28 0.00061 43.0 2.6 23 282-307 20-42 (412)
101 PF07495 Y_Y_Y: Y_Y_Y domain; 31.8 1.5E+02 0.0033 26.3 6.4 56 667-732 10-65 (66)
102 KOG4121 Nuclear pore complex, 30.3 4E+02 0.0087 36.5 11.9 76 1230-1335 818-897 (1128)
103 PLN03188 kinesin-12 family pro 30.0 1.2E+02 0.0026 42.1 7.4 87 1157-1243 1112-1241(1320)
104 TIGR02917 PEP_TPR_lipo putativ 28.9 7.5E+02 0.016 32.2 14.7 75 1289-1365 753-829 (899)
105 PRK11788 tetratricopeptide rep 27.6 5.8E+02 0.013 30.2 12.4 26 1308-1333 286-311 (389)
106 PF14559 TPR_19: Tetratricopep 27.2 1.1E+02 0.0024 26.9 4.7 60 1287-1348 6-67 (68)
107 cd00923 Cyt_c_Oxidase_Va Cytoc 26.7 97 0.0021 31.1 4.4 63 1293-1357 24-97 (103)
108 PF02284 COX5A: Cytochrome c o 26.1 1E+02 0.0022 31.3 4.4 62 1293-1356 27-99 (108)
109 PF05694 SBP56: 56kDa selenium 25.5 60 0.0013 40.3 3.4 77 119-202 98-190 (461)
110 PRK15179 Vi polysaccharide bio 25.3 9E+02 0.02 32.3 14.2 115 1156-1334 104-218 (694)
111 PF14347 DUF4399: Domain of un 24.3 45 0.00097 32.5 1.7 33 963-996 39-71 (87)
112 PRK10049 pgaA outer membrane p 23.7 7.6E+02 0.016 33.1 13.4 23 1156-1178 255-280 (765)
113 PRK10049 pgaA outer membrane p 23.0 1E+03 0.023 31.8 14.5 45 1157-1208 215-266 (765)
114 PRK11447 cellulose synthase su 22.4 1.8E+03 0.04 31.1 17.3 66 1289-1356 620-687 (1157)
115 KOG1446 Histone H3 (Lys4) meth 22.3 9.8E+02 0.021 28.7 12.1 101 678-797 127-231 (311)
116 KOG3060 Uncharacterized conser 21.2 2.2E+02 0.0047 33.4 6.5 66 1288-1356 71-136 (289)
117 TIGR02795 tol_pal_ybgF tol-pal 20.4 6E+02 0.013 24.1 8.8 53 1310-1362 45-99 (119)
118 smart00150 SPEC Spectrin repea 20.3 4.2E+02 0.0092 24.5 7.5 73 1167-1252 25-98 (101)
119 PF14734 DUF4469: Domain of un 20.2 2.1E+02 0.0046 28.8 5.5 46 669-715 40-86 (102)
No 1
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-305 Score=2661.28 Aligned_cols=1245 Identities=47% Similarity=0.788 Sum_probs=1183.8
Q ss_pred ccccccccccccccccCCCcccccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCCCCcccC
Q 000645 80 GSLRRFKLNESTFLASLMPKKEIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGSGDIDT 159 (1377)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~Pk~etga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg~Gdvd~ 159 (1377)
.+..++.+++++|+++||||+||||..|+++||+||||||+||||||||||+|||||+|+||+|||+|+|||||+|||||
T Consensus 44 ~~Mats~~~e~~p~~~L~pK~Et~a~~FL~kyPeYDGRgV~IaIlDtGvDP~apGl~vttdGkpKv~dviDctGaGDVDt 123 (1304)
T KOG1114|consen 44 FTMATSYIVESFPVDALVPKKETGAYEFLKKYPEYDGRGVTIAILDTGVDPSAPGLQVTTDGKPKVKDVIDCTGAGDVDT 123 (1304)
T ss_pred EEeeeccccCccccccccccchhhHHHHHHhCcCCCCCceEEEEeecCCCCCCCCceEecCCCcceeEEEecCCCCcccc
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCCCcEeecccceEEeCCcccCCCcceEEeeeeeeccccHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHhh
Q 000645 160 STVIKADSDGCIRGASGATLVVNSSWKNPSGEWHVGYKLVYELFTESLTSRLKSERK-KKWEEKNQEAIAKAVKHLDEFN 238 (1377)
Q Consensus 160 ~~~v~~~~dg~i~~~sGr~l~i~~~w~~psg~~~vG~k~~~~lfp~~l~~rl~kerk-~~w~~~~~~a~aea~~~l~~f~ 238 (1377)
+++|.+++||+|+|+|||+|+||.+|+||+|+||||+|.+|+|||+.|++|++++|| +.|++.|+.++++|++++.+|+
T Consensus 124 s~~v~~~edg~I~G~SGrtLkl~~~wknPtg~~~VG~K~~yel~pk~lr~rv~a~~k~k~wd~~h~~a~a~A~~~~~efe 203 (1304)
T KOG1114|consen 124 STEVTAAEDGTITGLSGRTLKLSASWKNPTGKWRVGLKLAYELFPKDLRSRVQAKRKEKDWDKSHRKALAEATRKLAEFE 203 (1304)
T ss_pred ceEEeeccCceEecccCceEEcccccCCCCcceEeccchHHHhchHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888 5899999999999999999999
Q ss_pred hccCccc-cchhhhhhhhhhhhHHHhhhcccccCCCCcccceEEecCCCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccc
Q 000645 239 QKHKKVE-DGKLKRVREDLQNRVDILRKQAESYDDKGPVVDAVVWHDGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKT 317 (1377)
Q Consensus 239 ~~~~~p~-~~~~k~~~edl~~~v~~l~~~~~~y~d~gp~id~~vw~~GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~ 317 (1377)
.++++.. ..+.|..+|+|+.++++|+++.+.|+|+||+|||++||+|++|.++|||. ..+||.-..++.+|+.
T Consensus 204 ~~~~g~~~k~~~k~~rEdl~~kve~Lks~a~ky~D~gpvyD~vvwhdgE~Wrv~iDt~------~~Gdl~~~~~L~~~~~ 277 (1304)
T KOG1114|consen 204 DKNPGASLKKDNKQTREDLQSKVEFLKSLAKKYDDPGPVYDVVVWHDGEVWRVCIDTD------ETGDLYLHKVLGEFNE 277 (1304)
T ss_pred hhCCCccchhhhHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCCeEEEEeccc------ccCccccccccccccc
Confidence 9999854 46778999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhh
Q 000645 318 ERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTG 397 (1377)
Q Consensus 318 ~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ 397 (1377)
.++|+.|++.|.+++.+|.||+||.++++.+++.||||||||++|+++..+..+||||||+|++++|+|.++|+|+|+..
T Consensus 278 t~e~~~f~~~d~l~ysV~vyd~gnvlsIV~~Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgta 357 (1304)
T KOG1114|consen 278 TGEYATFGSLDLLSYSVNVYDDGNVLSIVTVSGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTA 357 (1304)
T ss_pred cccccccccccccceeEEEccCCceEEEEecCCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCc
Q 000645 398 LTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSP 477 (1377)
Q Consensus 398 ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp 477 (1377)
+.+|+..+++++|||||||||....+++++++++.+.+.++++|||+|+||||+||.++|+|+||+++.++|+||||.+|
T Consensus 358 ltRA~~~v~e~~vDiINmSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp 437 (1304)
T KOG1114|consen 358 LTRAMIEVIEHNVDIINMSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP 437 (1304)
T ss_pred HHHHHHHHHHhcCCEEEeccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred ccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhh
Q 000645 478 AMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKA 557 (1377)
Q Consensus 478 ~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~ 557 (1377)
+|+.+.|+++++.. ++.++||||||+.||.+++.|+|||++|+++|.|+..+.++|+|||||+|++||++|||+|++++
T Consensus 438 ~mm~a~y~~~e~vp-~~~YtWsSRgP~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa 516 (1304)
T KOG1114|consen 438 GMMQAEYSVREPVP-SNPYTWSSRGPCLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACGAIALLLSGLKA 516 (1304)
T ss_pred HHHHhhhhhhccCC-CCccccccCCCCcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccchHHHHHHHHHh
Confidence 99999999998755 45999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhcCccCCCCCCCCCcccccccCHHHHHHHHHhc-CCCCc-eeE-EEEEccCCCCCCceeeEEEec
Q 000645 558 NAIPVSPYTVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYEYVQQY-GNVPC-VSY-QIKINQSGKLTPTYRGIYLRD 634 (1377)
Q Consensus 558 ~~p~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~GlIna~kAv~~l~~~-~~~p~-~~~-~vsv~~~~~~~~~~rGIylr~ 634 (1377)
+|..+||+.||++|++||.++++. +.+.||.|+|++++|++++.+. ..+|. +.| .+.+.+ +-.||||+|+
T Consensus 517 ~ni~ytpysVrrAlenTa~~l~~i--d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f~~v~VgN-----~~srGIyLRe 589 (1304)
T KOG1114|consen 517 QNIPYTPYSVRRALENTATKLGDI--DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGFINVNVGN-----SCSRGIYLRE 589 (1304)
T ss_pred cCCCCcHHHHHHHHHhcccccCcc--chhccCcceeehhHHHHHHHHhhhcCCccceeEEEeecc-----ccccceEecC
Confidence 999999999999999999999988 6899999999999999999987 45555 666 666621 1269999999
Q ss_pred CCCCCceEEEEEEeeeeccCCCCCcccccCceEEEEEeeCCCceEEcCcceeecCCceEEEEEEcCCCCCCCeeEEEEEE
Q 000645 635 AGASQQSTEWTVQVEPKFHEDASNLEELVPFEECIELHSTDKAVLRAPEYLLLTHNGRSFNVVVDPTNLEDGLHYYEIYG 714 (1377)
Q Consensus 635 ~~~~~~~~~~tv~v~p~~~~~~~~~~~~~~~~~~v~l~~~~~~wv~vP~~~~l~~~~~~~~V~VDp~~L~~G~h~~~v~~ 714 (1377)
+..+..+.+|+|.|+|.|+++.++..++++|+.++.|+++++ ||+||+++++++++|+++|+|||++|++|+||++|++
T Consensus 590 p~~~~~p~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~p-wVq~p~~l~l~~~~R~i~VrVDpt~l~~G~hy~eV~g 668 (1304)
T KOG1114|consen 590 PTQVCSPSEHTIGVEPIFENGEENEKEKISFEVQLSLASTQP-WVQCPEYLMLANQGRGINVRVDPTGLAPGVHYTEVLG 668 (1304)
T ss_pred CcccCCccccceeccccccCccccccccccceeeEeeecCCc-ceeCchhheeccCCceeEEEECCcCCCCCcceEEEEE
Confidence 999999999999999999998887668999999999988887 9999999999999999999999999999999999999
Q ss_pred EecCCCCCCCeEEEEEEEEecccccCCCCceeeeecccCCCeeEEEEeecCCCCcEEEEEEeecCCCCcceEEEEeeccc
Q 000645 715 IDCKAPGRGPLFRIPVTIIKPTAVVKRPPLVSFSRMSFLPGQIERRFIEVPLGATWVEATMRTSGFDTTRRFFVDTVQVC 794 (1377)
Q Consensus 715 ~D~~~~~~g~~~~IPvTvv~P~~~~~~~~~~~~~~~~~~~G~i~R~Fv~VP~Gat~~~v~l~~~~~~~~~~f~~h~~ql~ 794 (1377)
||+++|+.||+|||||||++|..+....+..++..++|.||+|+|+||+||+||||+|+|||++++|..+||++|++|++
T Consensus 669 yD~~~p~~gplFrIPVTVi~P~~v~~~~~t~~f~~~~F~pg~i~R~FievP~gATwAeitmrst~~e~~~rf~iht~q~~ 748 (1304)
T KOG1114|consen 669 YDTANPSRGPLFRIPVTVIKPKVVANDQYTLRFVSVEFEPGLIERRFIEVPEGATWAEITMRSTSLESTNRFWIHTNQLI 748 (1304)
T ss_pred eecCCcccCceEEeeeEEEccccccCCCCccccccccccCCceeeeeEecCCCcceEEEEEEecCccccceEEEEeeeec
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cCC--CcceeeeeEeecCCCceeEEEEeeCCcEEEEEeeecccCCCCCCCceEEEeeeeeeEEEEeeeeCCC-eeeecCC
Q 000645 795 PLQ--RPLKWENVVTFSSPVSKNFAFPVVGGQTMELAIAQFWSSGMGSHETTIVDFEVAKLIEFHGIAVNKD-EVLLDGS 871 (1377)
Q Consensus 795 p~~--~~~e~~~~~~~~~~~~~~~~f~v~~g~t~E~~ia~~Ws~~~~~~~~~~~~~~~~~~i~F~g~~~~~~-~~~~~~~ 871 (1377)
|++ |..||+++++|.++++++++|+|.+|+||||||||||| |+|++.|||+ |+||||.+.++ +++||++
T Consensus 749 p~~~~r~~et~ki~~~~~~~~~s~~f~V~~gktlElcia~~WS----sl~~~~ld~t----i~FhGV~~~~~~~l~l~as 820 (1304)
T KOG1114|consen 749 PQRKLREAETEKIMSVPSNNETSKAFPVDSGKTLELCIAQWWS----SLGPVVLDYT----INFHGVKVVNPKELNLHAS 820 (1304)
T ss_pred chhhcccccceeccccCCCCceEEEEEecCcccHHHHHHHHHh----hcCCeeeEEE----EEEEeeecCCchheeeccc
Confidence 999 99999999999999999999999999999999999999 9999999999 99999999886 9999999
Q ss_pred CCceEEEEeccCcccccccceeecceeeeecCCCceeecCCCCCCCCCCCcceEEEEEEEEeeeccceeeeecccccccc
Q 000645 872 EAPVRIDAEALLTSERLAPAAVLNKIRVPCRPIETKLTVLPTNRDKLPSGKQILALTLTYKFKLEDGAEVKPQIPLLNNR 951 (1377)
Q Consensus 872 ~~~~r~~~~~~l~~e~~~P~~~l~~~~~~~rP~~~~i~pl~~~rd~l~~~~q~~~l~ltY~~~~~~~~~v~p~~p~l~~~ 951 (1377)
+|++||++.+ |++|+++|+|+||+|+++|||+++||+|| ++||+||+|||||||+|||+|+++|++||+|+||+||++
T Consensus 821 ~g~~r~e~~a-l~~ed~~P~i~Lk~~vv~lkP~~AkikpL-g~RDvlp~G~Qi~~lllTy~~~v~k~aEV~~~~p~l~~~ 898 (1304)
T KOG1114|consen 821 EGPIRVEAAA-LKSEDVKPDITLKNYVVSLKPTSAKIKPL-GDRDVLPDGRQIYELLLTYNLKVSKSAEVKPYFPLLNNL 898 (1304)
T ss_pred CCceeeeehh-hhhcccCcceEhhhcEEeccccccccccC-CccccCCChHHHHHHHHheeeccCccccccccccccchh
Confidence 9999999987 99999999999999999999999999999 569999999999999999999999999999999999999
Q ss_pred cccccccceEEEEEeCCCceeeeccCCCCC--CCCCCccEEEEEEEecCChHHHHhccCCcEEEEEecCCCCeEEEeccc
Q 000645 952 IYDTKFESQFYMISDTNKRVYAQGDVYPDY--SKLPKGDYNLQLYLRHDNVQYLEKMKQLVLFIERKLEEKDVIRLSFFS 1029 (1377)
Q Consensus 952 lYes~~~~q~~~i~d~nk~~~~~gd~yp~~--~kl~KG~Y~~~~qirh~~~~~Le~lk~~~l~~~~kL~~~~~i~l~~~~ 1029 (1377)
|||++||||||||||+|||+|++||+||++ .||||||||||||||||++++|||||++||++++||.++ |+||+|+
T Consensus 899 lYes~fesq~fmifdaNK~~v~~gd~yp~s~t~KLeKGeYtiqlqlrhe~~~~LEklkel~l~v~~kL~~~--itLdl~~ 976 (1304)
T KOG1114|consen 899 LYESEFESQFFMIFDANKRRVAYGDAYPHSSTQKLEKGEYTIQLQLRHEDPSLLEKLKELTLRVSKKLGNP--ITLDLYA 976 (1304)
T ss_pred hhcCccceEEEEEEccccceeeccccCcchhhccccCCceEEEEEeecCCHHHHHHhhcCcEEEEeccCCc--eEEehhh
Confidence 999999999999999999999999999994 599999999999999999999999999999999999999 9999999
Q ss_pred CCCCcccCCCccccccccCCCeeeEEecCCCCCCCCCCCCCC-ceEEEEEEeccccccCCCCCCCCCCCCeeEEEEEEc-
Q 000645 1030 QPDGPIMGNGTYKSSILVPGKKEAFYLSPPGKDKLPKNSPQG-SILLGAISYGKLSFQGQEGGKNPQKNPVSYEIAYIV- 1107 (1377)
Q Consensus 1030 ~~~~a~~g~~~~~~~~l~~g~~~~~~~~~~~~~k~pk~~~~g-~~l~G~~~~~k~~~~~~~~~~~~~~~~~~~~~~y~~- 1107 (1377)
+|++++.|++||....|+||..++||++|+++|||||+..|| ++|+|+|+|+|++.+ ++.+++|++|.+
T Consensus 977 ~~~~~~~gk~k~~~~~l~p~~~~~~y~~~i~~dklpK~~~p~~s~LaG~ls~~k~e~g---------~k~~~~pv~y~l~ 1047 (1304)
T KOG1114|consen 977 NHSDACLGKTKFERENLPPGVVSFVYGTNITDDKLPKELKPGSSLLAGELSFGKDEKG---------SKVDKVPVTYFLN 1047 (1304)
T ss_pred cccccccCccccccccCCcCceeEEEecCCcccccccccCCccceeeeeeeecccccc---------cccccCceeEeec
Confidence 999999999999999999999999999999999999999999 599999999999873 345789999876
Q ss_pred CCCCC--CCCCCCCCCC-CCCChHHHHHHHHHHHHHHHhhccCcCChhhhhhHHHHHHHHHHhCCCChHHHHHHHHhhhc
Q 000645 1108 PPNKL--DEDKGKGSPT-GTKTVSERLEEEVRDAKMKVLGSLKQETDEECSDWKKLAASLKSEYPKYTPLLAKILEGLLS 1184 (1377)
Q Consensus 1108 ~p~~~--~~~~~~~~~~-~~k~~~~~~~e~~rd~~i~~l~kl~~~~~~~~~~~~~~~~~l~~~~p~~lpl~~~~l~~l~~ 1184 (1377)
||+.+ ++.+++..+. ++|+..|+|+|++||+||+||.||++| +++++|+.|+++||+||||+..+|++|.+
T Consensus 1048 p~~~~~~ng~~dk~~~skk~k~~~e~~~eairDlqv~~l~kl~~e------~~~k~~~~l~s~ypd~lpll~~~l~kl~~ 1121 (1304)
T KOG1114|consen 1048 PPKTKTTNGLKDKMVDSKKDKKLGEECAEAIRDLQVSWLSKLADE------EAEKIYNYLKSSYPDYLPLLEVRLAKLMQ 1121 (1304)
T ss_pred CcccccccCccccccccccchhhHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHhCcccchHHHHHHHHhhh
Confidence 44433 4555555444 888999999999999999999999865 47899999999999999999999999955
Q ss_pred cCC-CCCccchHHHHHHHHHHHHHcCCHHHHHhHhcccCCCCcHHHHHHHhhHHHhHHHHHHHHHHHHHHhhhhhhhccc
Q 000645 1185 RSN-VGDKIHHYEEVIDAANEVVDSIDQDELAKFFSQKSDPEDEETEKIKKKMETTRDQLAEALYQKALAMLEIESLKGE 1263 (1377)
Q Consensus 1185 ~~~-~~~~~~~~~~ii~~ad~vi~~id~~~l~~~~~~k~d~~~~~a~~~k~~m~~~k~~l~~AL~~k~~al~~~~~~~~~ 1263 (1377)
+.+ .++..++++|||++||.||++||+++|+.||++|+|+| +||+|+|++||+||++||+|||+||+|+++.+.++..
T Consensus 1122 ~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~k~D~r-~da~klk~~me~qk~tli~AL~kKg~a~ak~e~l~g~ 1200 (1304)
T KOG1114|consen 1122 KSDAVKETNKKIEEILSAADSVIQEIDTEALARYYALKEDTR-PDAVKLKKKMEKQKDTLIDALVKKGEAFAKYEALKGH 1200 (1304)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhcccCCc-chHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhccc
Confidence 432 23568888999999999999999999999999999999 6899999999999999999999999999998776654
Q ss_pred cCccccccCCCccCCCCCCCchhHHHHHHHHHhhcccCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHH
Q 000645 1264 KSGAEAATEGTTDVDKTSDSQPDLFEENFKELKKWADVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLY 1343 (1377)
Q Consensus 1264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kw~d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~ 1343 (1377)
... ..+|+.+.+|.++|+|+||.||+|.+|+|+++|++||+.++||||||||+|.|++|++.++..++++
T Consensus 1201 ~e~----------daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~ 1270 (1304)
T KOG1114|consen 1201 KEQ----------DAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVA 1270 (1304)
T ss_pred ccc----------cchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 311 1335668899999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHhCChhHHHHHHhhccccCCCCCCCC
Q 000645 1344 ELKISLLEELGWSHLTTYEKLWMHVRFPPSLPLF 1377 (1377)
Q Consensus 1344 ~~~~~l~~~lgw~h~~~~~~~~~~~~~p~~~~~F 1377 (1377)
+++++||+.|||+|+++|+++||+++||++||+|
T Consensus 1271 ~~~~el~~~Lgw~H~~t~~~~~~~v~~p~Sy~LF 1304 (1304)
T KOG1114|consen 1271 VLLAELLENLGWNHLATFVKNWMRVPFPYSYRLF 1304 (1304)
T ss_pred HHHHHHHHHhCchHhHHHHhhheeccCCccccCC
Confidence 9999999999999999999999999999999999
No 2
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3e-94 Score=845.70 Aligned_cols=412 Identities=64% Similarity=1.057 Sum_probs=385.9
Q ss_pred cCCCcccccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCCCCcccCcceeeeCCCCcEeec
Q 000645 95 SLMPKKEIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGSGDIDTSTVIKADSDGCIRGA 174 (1377)
Q Consensus 95 ~l~Pk~etga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg~Gdvd~~~~v~~~~dg~i~~~ 174 (1377)
+||||+||||.+|+++||+||||||+||||||||||+|||||+|+||+|||||||||||+|||||+++|..+++|+|+++
T Consensus 1 ~~~pk~~~~~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~t~~g~~ki~d~~d~t~~gdv~~~~~~~~~~~~~~~~~ 80 (412)
T cd04857 1 GLLPKKETGALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGKPKIIDIIDCTGSGDVDTSTVVTPDDGGIIGGL 80 (412)
T ss_pred CCCCcchhhHHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccccCCCCCeEEEEEeCCCCCCcccceEEecCCCCeEecc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeCCcccCCCcceEEeeeeeeccccHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhccCccccchhhhhhh
Q 000645 175 SGATLVVNSSWKNPSGEWHVGYKLVYELFTESLTSRLKSERKKKWEEKNQEAIAKAVKHLDEFNQKHKKVEDGKLKRVRE 254 (1377)
Q Consensus 175 sGr~l~i~~~w~~psg~~~vG~k~~~~lfp~~l~~rl~kerk~~w~~~~~~a~aea~~~l~~f~~~~~~p~~~~~k~~~e 254 (1377)
+||+|+||.+|+||+|+||||+|+.|+
T Consensus 81 ~g~~~~~~~~~~~~~g~~~~g~~~~~~----------------------------------------------------- 107 (412)
T cd04857 81 TGRKLKIPASWKNPSGKYHVGIKNAYD----------------------------------------------------- 107 (412)
T ss_pred CCceecCcccccCCCCeEEEeeEEecc-----------------------------------------------------
Confidence 999999999999999999999988666
Q ss_pred hhhhhHHHhhhcccccCCCCcccceEEecCCCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCccccccc
Q 000645 255 DLQNRVDILRKQAESYDDKGPVVDAVVWHDGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVA 334 (1377)
Q Consensus 255 dl~~~v~~l~~~~~~y~d~gp~id~~vw~~GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~ 334 (1377)
.+.|++.||.|||++|++++.|.|+||+. +.++|.+..++++|+..++|+.|+..+.++|.+
T Consensus 108 ------------~~~~~~~~~~~d~~v~~~~~~~~~~~d~~------~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 169 (412)
T cd04857 108 ------------EKKYEDPGPVYDCVVFHDGEHWRAVIDTS------ETGDLDSCTVLTNYREEREYATFGEQDLLNYSV 169 (412)
T ss_pred ------------hhcccCCCCcceEEEEecCCceEEEEecC------CCCccccCcccccccccceeEeeccccceeeEE
Confidence 12478999999999999999999999999 889999999999999999999999999999999
Q ss_pred ccccCCCccccCCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEE
Q 000645 335 NVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLIN 414 (1377)
Q Consensus 335 n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVIN 414 (1377)
|++++++.++++.|+++|||||||||||+.+++.++.||||+|+|+++|+++...+.+++..++++||++|+++|++|||
T Consensus 170 ~~~~~g~~~~~~~d~~gHGThVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN 249 (412)
T cd04857 170 NIYDDGNLLSIVTDSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLIN 249 (412)
T ss_pred EEccCCCceecCCCCCCCHHHHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999888888999999999999999987777766777899999999999999999
Q ss_pred eCcCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCC
Q 000645 415 MSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGL 494 (1377)
Q Consensus 415 mS~G~~~~~~~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~ 494 (1377)
||||....+++..++.+.+.+.+.++|++||+||||+|+..+++++|++..++||+|||+.++.++...|++.+.. .+.
T Consensus 250 ~SlG~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~-~~~ 328 (412)
T cd04857 250 MSYGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKL-PGN 328 (412)
T ss_pred ecCCcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccccccc-CCc
Confidence 9999987666666677777788888999999999999999999999986678999999999999888888776543 467
Q ss_pred cccccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 000645 495 EYTWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574 (1377)
Q Consensus 495 ~asfSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~T 574 (1377)
++.||||||+.||++||||+|||++|.+++.|..++|..|+|||||||||||++|||+|+++++++.++|.+||++|++|
T Consensus 329 ~~~fSSrGP~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~T 408 (412)
T cd04857 329 QYTWSSRGPTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENT 408 (412)
T ss_pred cccccccCCcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999988999888999999999999999999999999999999999999999999999
Q ss_pred CccC
Q 000645 575 SVPI 578 (1377)
Q Consensus 575 A~~l 578 (1377)
|+++
T Consensus 409 A~~~ 412 (412)
T cd04857 409 AKKL 412 (412)
T ss_pred CccC
Confidence 9864
No 3
>PF12580 TPPII: Tripeptidyl peptidase II ; InterPro: IPR022229 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=100.00 E-value=4.7e-68 Score=563.57 Aligned_cols=192 Identities=46% Similarity=0.819 Sum_probs=147.2
Q ss_pred EEEeccCcccccccceeecceeeeecCCCceeecCCCCCCCCCCCcceEEEEEEEEeeeccceeeeeccccccccccccc
Q 000645 877 IDAEALLTSERLAPAAVLNKIRVPCRPIETKLTVLPTNRDKLPSGKQILALTLTYKFKLEDGAEVKPQIPLLNNRIYDTK 956 (1377)
Q Consensus 877 ~~~~~~l~~e~~~P~~~l~~~~~~~rP~~~~i~pl~~~rd~l~~~~q~~~l~ltY~~~~~~~~~v~p~~p~l~~~lYes~ 956 (1377)
|||+|+|+.|+|+|+|+|++|++++||+|+||+||+ +||+||+|||||||+|||+|+++|++||+|+||+||++||||+
T Consensus 1 vdv~s~l~~E~l~P~~~L~~~~~~lrP~e~kI~pL~-~RD~lp~grqiy~L~LtY~f~~~k~~eV~p~~p~L~~~LYes~ 79 (194)
T PF12580_consen 1 VDVRSPLRSEELQPSASLKTWVQPLRPTESKIRPLG-PRDVLPDGRQIYELVLTYNFKLAKAGEVTPRLPLLSDLLYESE 79 (194)
T ss_dssp -----ESS-EEEEEEEEEEEEEEEE--S-EEEEE---SSSEETTTEE-EEEEEEEEEEESS-EEEEEE-TTTTT-SSS-S
T ss_pred CCcccccceeEeeeEEEEEEEEEEeccCcceEeeCc-hhhcCCCCceeEEEEEEEEEecCCceeEEEecccccchhhccc
Confidence 689999999999999999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEeCCCceeeeccCCCC--CCCCCCccEEEEEEEecCChHHHHhccCCcEEEEEecCCCCeEEEecccCCCCc
Q 000645 957 FESQFYMISDTNKRVYAQGDVYPD--YSKLPKGDYNLQLYLRHDNVQYLEKMKQLVLFIERKLEEKDVIRLSFFSQPDGP 1034 (1377)
Q Consensus 957 ~~~q~~~i~d~nk~~~~~gd~yp~--~~kl~KG~Y~~~~qirh~~~~~Le~lk~~~l~~~~kL~~~~~i~l~~~~~~~~a 1034 (1377)
||||||||||+|||+|++||+||+ ++||+|||||||+|||||++++|||||++||+|++||+++ |+||||++|++|
T Consensus 80 fesql~mifD~NK~~v~~gDayp~~y~~kL~KGdYtlrlqiRHe~~~~LEklk~~~l~l~~kL~~~--isldvy~~~~~a 157 (194)
T PF12580_consen 80 FESQLWMIFDSNKQLVGSGDAYPHRYSTKLEKGDYTLRLQIRHEDRSLLEKLKDLPLLLEQKLKSP--ISLDVYSSHNDA 157 (194)
T ss_dssp SS---EEEE-TTS-EEEEE-SS-TT--EEE-SEEEEEEEEEEES-HHHHGGGTT--EEEEEEEEEE--EEE--BSSHHHH
T ss_pred ccceEEEEEcCCCcEEEccccCCccCccccCCccEEEEEEEecCCHHHHHHhhCCcEEEEeccCCc--EEEeeecChHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCccccccccCCCeeeEEecCCCCCCCCCCCCCC
Q 000645 1035 IMGNGTYKSSILVPGKKEAFYLSPPGKDKLPKNSPQG 1071 (1377)
Q Consensus 1035 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~k~pk~~~~g 1071 (1377)
++|++|+++.+|.+|+++||||+|+++|||||++.||
T Consensus 158 ~~g~~k~~~~~L~~g~~~~~yi~~~~~dklPK~~~pG 194 (194)
T PF12580_consen 158 LMGGKKFKSSTLPPGQSRPFYIGPPPDDKLPKDAKPG 194 (194)
T ss_dssp HTT-S----EEE-S-SEEEEEE----HHHHHTTT---
T ss_pred hhCCCcccccCccccccceEEecCCChhhccCCCCCC
Confidence 9999999999999999999999999999999999998
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.6e-42 Score=416.99 Aligned_cols=281 Identities=20% Similarity=0.218 Sum_probs=210.6
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCC-------CccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHH
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLT-------NYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAG 358 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~-------~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAG 358 (1377)
+|+||||||| +|.+|+||.+..... +.-.....|...+..+++| .++. ..+.|++||||||||
T Consensus 317 gV~VAVIDTG---ID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~vdd~~G~nf----Vd~~---~~P~D~~GHGTHVAG 386 (639)
T PTZ00262 317 DTNICVIDSG---IDYNHPDLHDNIDVNVKELHGRKGIDDDNNGNVDDEYGANF----VNND---GGPMDDNYHGTHVSG 386 (639)
T ss_pred CcEEEEEccC---CCCCChhhhhhcccccccccCccccccccCCcccccccccc----cCCC---CCCCCCCCcchHHHH
Confidence 8999999999 667899998755211 1011111222222223333 2222 134688999999999
Q ss_pred HHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHh
Q 000645 359 IATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVN 438 (1377)
Q Consensus 359 IIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~ 438 (1377)
||||.++++.++.||||+|+|+++|+++..+.+ +.+++++||+||+++|++|||||||+... ...+..+++++.
T Consensus 387 IIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G--~~sdI~~AI~yA~~~GA~VINmSlG~~~~----s~~l~~AV~~A~ 460 (639)
T PTZ00262 387 IISAIGNNNIGIVGVDKRSKLIICKALDSHKLG--RLGDMFKCFDYCISREAHMINGSFSFDEY----SGIFNESVKYLE 460 (639)
T ss_pred HHhccccCCCceeeeecccccceEEEecCCCCc--cHHHHHHHHHHHHHCCCCEEEeccccCCc----cHHHHHHHHHHH
Confidence 999998888899999999999999999875433 56789999999999999999999997533 346778888899
Q ss_pred cCCcEEEEecCCCCCCCC------------CCCCCCC---CCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCC
Q 000645 439 KHRLVFVSSAGNSGPALN------------TVGAPGG---TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGP 503 (1377)
Q Consensus 439 ~~GVivV~AAGN~G~~~~------------tvg~Pa~---~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP 503 (1377)
++|+++|+||||+|.... ...||+. ..++||+|||++... ......+.+|++|.
T Consensus 461 ~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-----------~~~~s~s~~Snyg~ 529 (639)
T PTZ00262 461 EKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-----------NNQYSLSPNSFYSA 529 (639)
T ss_pred HCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC-----------CCcccccccccCCC
Confidence 999999999999986421 1246764 357999999986200 00111334556652
Q ss_pred CCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCCC
Q 000645 504 TADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAE 583 (1377)
Q Consensus 504 ~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~~ 583 (1377)
..+||+|||.+|. +++..++|..++|||||||+|||++|||++. +|.+++.+|+++|.+||.+++..
T Consensus 530 -----~~VDIaAPG~dI~--St~p~g~Y~~~SGTSmAAP~VAGvAALLlS~----~P~LT~~qV~~iL~~TA~~l~~~-- 596 (639)
T PTZ00262 530 -----KYCQLAAPGTNIY--STFPKNSYRKLNGTSMAAPHVAAIASLILSI----NPSLSYEEVIRILKESIVQLPSL-- 596 (639)
T ss_pred -----CcceEEeCCCCee--eccCCCceeecCCCchhHHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCccCCCC--
Confidence 2499999999994 4566788999999999999999999999999 88999999999999999887654
Q ss_pred CCCcccccccCHHHHHHHHHhcC
Q 000645 584 DKLSTGHGLLQVDKAYEYVQQYG 606 (1377)
Q Consensus 584 ~~~~~G~GlIna~kAv~~l~~~~ 606 (1377)
.+...+.|+||+.+|++++....
T Consensus 597 ~n~~~wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 597 KNKVKWGGYLDIHHAVNLAIASK 619 (639)
T ss_pred CCccccCcEEcHHHHHHHHHhcc
Confidence 22223338999999999877543
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=390.38 Aligned_cols=278 Identities=28% Similarity=0.295 Sum_probs=190.5
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccc-cCcccccccccccCCCccccCCCCCCcHHHHHHHHhcc
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFS-KLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAF 363 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~-~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~ 363 (1377)
.||+||||||| +|.+||||....... ....+...+ ...++++.. +......|.+||||||||||||.
T Consensus 2 ~gV~VaViDTG---id~~HPdl~~~~~~~---~~~~~d~~~~~~~g~d~~~------~~~~~~~D~~gHGThvAGiiag~ 69 (311)
T cd07497 2 EGVVIAIVDTG---VDYSHPDLDIYGNFS---WKLKFDYKAYLLPGMDKWG------GFYVIMYDFFSHGTSCASVAAGR 69 (311)
T ss_pred CCeEEEEEeCC---cCCCChhHhcccCCC---cccccCcCCCccCCcCCCC------CccCCCCCccccchhHHHHHhcc
Confidence 38999999999 666899996533111 000000000 001111111 11134568899999999999998
Q ss_pred CCC---------CCCcccccCCCeEEEEEEccCCCCCcc----Ch-hhHHHHHHHH--HhCCCcEEEeCcCCCCCCCC-h
Q 000645 364 NPE---------EPLLNGIAPGAQLISCKIGDTRLGSME----TG-TGLTRAFIAA--VEHKCDLINMSYGEPTLLPD-Y 426 (1377)
Q Consensus 364 ~~n---------~~g~~GVAP~AkIi~vkV~d~~~g~~~----t~-s~ii~Ai~~A--i~~gadVINmS~G~~~~~~~-~ 426 (1377)
.++ ..++.||||+|+|+++|+++....... .+ .....++.|+ .+++++|||||||....... +
T Consensus 70 ~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~ 149 (311)
T cd07497 70 GKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGY 149 (311)
T ss_pred CcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccc
Confidence 642 347899999999999999864322210 00 1122244444 46899999999997543211 0
Q ss_pred ---HHHHHHHHH-HHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCC
Q 000645 427 ---GRFIDLVNE-AVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG 502 (1377)
Q Consensus 427 ---~~~~~~a~~-~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrG 502 (1377)
....+.+.+ .+.++|+++|+||||+|++..++.+|+ ..+++|+|||++...+.............+.++.|||||
T Consensus 150 ~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~fSs~G 228 (311)
T cd07497 150 APGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPG-AASLAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRG 228 (311)
T ss_pred ccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCcc-CCCCeEEEEeccCCcccchhhhccccCCCCCccccccCC
Confidence 011233333 345899999999999999888899999 678999999997543322211111122456789999999
Q ss_pred CCCCCCCceEEEecCCceee-cccc-------CCccccccCCCchhhHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHH
Q 000645 503 PTADGDLGVCISAPGGAVAP-VSTW-------TLQRRMLMNGTSMASPSACGGIALLISAMKANAI--PVSPYTVRKAVE 572 (1377)
Q Consensus 503 P~~dG~~KpDI~APG~~I~s-~~~~-------~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p--~lTp~~Ik~~L~ 572 (1377)
|+.++++||||+|||++|.+ .+.. ....|..++|||||||||||++|||+|++++.+. .+++.+||++|+
T Consensus 229 p~~~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~ 308 (311)
T cd07497 229 PSIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILM 308 (311)
T ss_pred CCcccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHH
Confidence 99999999999999998843 2222 1236889999999999999999999999887554 799999999999
Q ss_pred hcC
Q 000645 573 NTS 575 (1377)
Q Consensus 573 ~TA 575 (1377)
+||
T Consensus 309 ~tA 311 (311)
T cd07497 309 STA 311 (311)
T ss_pred hcC
Confidence 997
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=8.9e-41 Score=379.32 Aligned_cols=266 Identities=22% Similarity=0.188 Sum_probs=196.0
Q ss_pred cCCCeEEEEEcCCCCCCCC-----CCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHH
Q 000645 283 HDGEVWRVALDTQSLEDEP-----DHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVA 357 (1377)
Q Consensus 283 ~~GgV~VAVIDTGI~~~d~-----~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVA 357 (1377)
...||+|||||||++..|+ .|++|.... ++..+ .....|.++||||||
T Consensus 3 tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~--------------------~~~~~-------~~~~~d~~gHGT~vA 55 (275)
T cd05562 3 DGTGIKIGVISDGFDGLGDAADDQASGDLPGNV--------------------NVLGD-------LDGGSGGGDEGRAML 55 (275)
T ss_pred CCCceEEEEEeCCccccccccccccCCCCCcce--------------------eeccc-------cCCCCCCCchHHHHH
Confidence 3458999999999776655 333333211 00000 112357889999999
Q ss_pred HHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHH
Q 000645 358 GIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAV 437 (1377)
Q Consensus 358 GIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a 437 (1377)
|||+ ||||+|+|+.+++++ ...++++||+|++++|++|||||||...........+..+++.+
T Consensus 56 gii~----------GvAP~a~l~~~~~~~-------~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a 118 (275)
T cd05562 56 EIIH----------DIAPGAELAFHTAGG-------GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEV 118 (275)
T ss_pred HHHh----------ccCCCCEEEEEecCC-------CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHHH
Confidence 9993 899999999988754 24689999999999999999999998543221122344555555
Q ss_pred hcC-CcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEec
Q 000645 438 NKH-RLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516 (1377)
Q Consensus 438 ~~~-GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~AP 516 (1377)
.++ |++||+||||+|.. .++.+|+ ..+++|+|||++......................|+++||..++..||||+||
T Consensus 119 ~~~~GvlvVaAAGN~g~~-~~~~~Pa-~~~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~~~~~~~di~Ap 196 (275)
T cd05562 119 VASPGVLYFSSAGNDGQS-GSIFGHA-AAPGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAP 196 (275)
T ss_pred HHcCCcEEEEeCCCCCCC-CCccCCC-CCCCeEEEEeeccCCCcccccccccCCCcccccCCcccCcCCCCCcCCeEEcC
Confidence 555 99999999999984 3556788 67899999999853322111110000001123456778888889999999999
Q ss_pred CCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCCCCCCcccccccCHH
Q 000645 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKLSTGHGLLQVD 596 (1377)
Q Consensus 517 G~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~GlIna~ 596 (1377)
|+.+. ...+..+.|..++|||||||+|||++|||+++ +|.+++.+||++|++||++++... .+..+|||+||+.
T Consensus 197 gg~~~-~~~~~~~~~~~~sGTS~AaP~VaG~aALl~~~----~p~lt~~~v~~~L~~tA~~~~~~g-~d~~~G~G~vda~ 270 (275)
T cd05562 197 DGVNG-TVDGDGDGPPNFFGTSAAAPHAAGVAALVLSA----NPGLTPADIRDALRSTALDMGEPG-YDNASGSGLVDAD 270 (275)
T ss_pred Ccccc-cCCCcCCceeecccchHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCcccCCCC-CCCCcCcCcccHH
Confidence 76431 34556678999999999999999999999998 789999999999999999886433 5678999999999
Q ss_pred HHHH
Q 000645 597 KAYE 600 (1377)
Q Consensus 597 kAv~ 600 (1377)
+|++
T Consensus 271 ~Av~ 274 (275)
T cd05562 271 RAVA 274 (275)
T ss_pred HHhh
Confidence 9986
No 7
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.7e-41 Score=377.08 Aligned_cols=241 Identities=26% Similarity=0.363 Sum_probs=193.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.+|+|||||||| +.+|++|.+.....+| . ++ ....|..+|||||||||+|..
T Consensus 8 ~gv~VaviDsGv---~~~hp~l~~~~~~~~~-----------------~----~~----~~~~d~~gHGT~VAGiIa~~~ 59 (255)
T cd07479 8 AGVKVAVFDTGL---AKDHPHFRNVKERTNW-----------------T----NE----KTLDDGLGHGTFVAGVIASSR 59 (255)
T ss_pred CCCEEEEEeCCC---CCCCcchhcccccccc-----------------C----CC----CCCCCCCCcHHHHHHHHHccC
Confidence 389999999995 5578888753211111 0 11 123467899999999999986
Q ss_pred CCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEE
Q 000645 365 PEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVF 444 (1377)
Q Consensus 365 ~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GViv 444 (1377)
+ ...||||+|+|+++|+++....+ ..+.++++++||++++++|||||||...... ..+.+. +..+.++|+++
T Consensus 60 ~---~~~GvAp~a~l~~~~v~~~~~~~--~~~~~~~a~~~a~~~~~~Vin~S~G~~~~~~--~~~~~~-~~~~~~~gi~v 131 (255)
T cd07479 60 E---QCLGFAPDAEIYIFRVFTNNQVS--YTSWFLDAFNYAILTKIDVLNLSIGGPDFMD--KPFVDK-VWELTANNIIM 131 (255)
T ss_pred C---CceeECCCCEEEEEEeecCCCCc--hHHHHHHHHHhhhhcCCCEEEeeccCCCCCC--cHHHHH-HHHHHHCCcEE
Confidence 4 45899999999999998865433 4567899999999999999999999865322 123333 34456789999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCC------CCCCCCceEEEecCC
Q 000645 445 VSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGP------TADGDLGVCISAPGG 518 (1377)
Q Consensus 445 V~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP------~~dG~~KpDI~APG~ 518 (1377)
|+||||+|+...+..+|+ ..+++|+|||.+ ..+.++.|||+|+ ..+++.+|||+|||.
T Consensus 132 V~aaGN~g~~~~~~~~Pa-~~~~vi~Vga~~---------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~ 195 (255)
T cd07479 132 VSAIGNDGPLYGTLNNPA-DQMDVIGVGGID---------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGS 195 (255)
T ss_pred EEEcCCCCCCcccccCcc-cCCCceEEeeec---------------cCCccccccCCCCCcccccCCCCCcCccEEecCC
Confidence 999999998777778998 567999999997 5678999999995 346888999999999
Q ss_pred ceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCC
Q 000645 519 AVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIG 579 (1377)
Q Consensus 519 ~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~ 579 (1377)
+|. .....+.|..++|||||||+|||++|||++++++..+.++|.+||++|++||++++
T Consensus 196 ~i~--~~~~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 196 GVY--GSKLKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred Cee--ccccCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 994 34456678899999999999999999999998766778999999999999999875
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=6e-41 Score=404.33 Aligned_cols=229 Identities=28% Similarity=0.324 Sum_probs=179.0
Q ss_pred CCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCC--------ccChhhHHHHHHHHHhC-----CCcEE
Q 000645 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS--------METGTGLTRAFIAAVEH-----KCDLI 413 (1377)
Q Consensus 347 ~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~--------~~t~s~ii~Ai~~Ai~~-----gadVI 413 (1377)
.|.+||||||||||||..+++.++.||||+|+|+++|+++..... ....++++.||+|+++. .+.||
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VI 154 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVI 154 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 467899999999999999887899999999999999998875431 12567899999999874 47899
Q ss_pred EeCcCCCCCCCChHHHHHHHHHHHhc-CCcEEEEecCCCCCCCCC-----------------------------------
Q 000645 414 NMSYGEPTLLPDYGRFIDLVNEAVNK-HRLVFVSSAGNSGPALNT----------------------------------- 457 (1377)
Q Consensus 414 NmS~G~~~~~~~~~~~~~~a~~~a~~-~GVivV~AAGN~G~~~~t----------------------------------- 457 (1377)
|||||......+....++.+++.+.. .|+++|+||||+|.....
T Consensus 155 nlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~eiW~~~~d 234 (455)
T cd07478 155 NISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFPD 234 (455)
T ss_pred EEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEEEecCCCC
Confidence 99999876655544556666655544 499999999999853110
Q ss_pred -----CCCCCC---------------------------------------------------------------------
Q 000645 458 -----VGAPGG--------------------------------------------------------------------- 463 (1377)
Q Consensus 458 -----vg~Pa~--------------------------------------------------------------------- 463 (1377)
+-.|.+
T Consensus 235 ~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~~~~~~~~g~~~~ 314 (455)
T cd07478 235 RFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFDA 314 (455)
T ss_pred EEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEEEeccCCCceEEE
Confidence 000110
Q ss_pred ---------------------------CCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEec
Q 000645 464 ---------------------------TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516 (1377)
Q Consensus 464 ---------------------------~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~AP 516 (1377)
..+++|+|||++ ...+.++.||++||+.++++||||+||
T Consensus 315 Wlp~~~~~~~~t~f~~~~~~~tit~Pa~~~~vitVga~~--------------~~~~~~~~~Ss~G~~~~~~~kpdi~AP 380 (455)
T cd07478 315 WLPSRGLLSENTRFLEPDPYTTLTIPGTARSVITVGAYN--------------QNNNSIAIFSGRGPTRDGRIKPDIAAP 380 (455)
T ss_pred EecCcCcCCCCCEeecCCCCceEecCCCCCCcEEEEEEe--------------CCCCcccCccCCCcCCCCCcCceEEec
Confidence 122333333332 123458999999999999999999999
Q ss_pred CCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHhcCccCCCCCCCCCccccc
Q 000645 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKA--NAIPVSPYTVRKAVENTSVPIGALAEDKLSTGHG 591 (1377)
Q Consensus 517 G~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~--~~p~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~G 591 (1377)
|.+|. +....+.|..++|||||||+|||++|||+|+.+. ++|.+++.+||++|++||++.+...+++..+|||
T Consensus 381 G~~i~--s~~~~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~pn~~~GyG 455 (455)
T cd07478 381 GVNIL--TASPGGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455 (455)
T ss_pred CCCEE--EeecCCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCCCCCCCCC
Confidence 99994 4555778999999999999999999999998643 4678999999999999999998777788999998
No 9
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.5e-40 Score=388.16 Aligned_cols=300 Identities=29% Similarity=0.353 Sum_probs=227.0
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCC-c---------cccccccccccCcccccccccccCCCccccCCCCCCcHH
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTN-Y---------KTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGT 354 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~-y---------~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGT 354 (1377)
.||+||||||| ++++|++|.+...... + .....++.+ ..+.+.+..++.++.+......+..+|||
T Consensus 11 ~gv~VaViDtG---v~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~HGT 86 (346)
T cd07475 11 EGMVVAVIDSG---VDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKY-YNEKVPFAYNYADNNDDILDEDDGSSHGM 86 (346)
T ss_pred CCcEEEEEeCC---CCCCChhHccCCCcccccchhhhhhhhcccCCCCcc-cccCCCeeEcCCCCCCccCCCCCCCCcHH
Confidence 38999999999 5568888876543221 0 111111111 12334455566555544444568899999
Q ss_pred HHHHHHhccCCC---CCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHH
Q 000645 355 HVAGIATAFNPE---EPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFID 431 (1377)
Q Consensus 355 hVAGIIAg~~~n---~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~ 431 (1377)
||||||+|..++ +.++.||||+|+|+.+|+++.......+...++.|++++++.+++|||||||.............
T Consensus 87 ~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 166 (346)
T cd07475 87 HVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQ 166 (346)
T ss_pred HHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHH
Confidence 999999999875 46899999999999999997411222256789999999999999999999998766544455677
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCC--------------CCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCccc
Q 000645 432 LVNEAVNKHRLVFVSSAGNSGPALN--------------TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYT 497 (1377)
Q Consensus 432 ~a~~~a~~~GVivV~AAGN~G~~~~--------------tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~as 497 (1377)
.+++.+.++|++||+||||+|.... .+++|+ ..+++|+||+++... .....+.++.
T Consensus 167 ~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~i~Vga~~~~~---------~~~~~~~~~~ 236 (346)
T cd07475 167 QAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPA-TADDVLTVASANKKV---------PNPNGGQMSG 236 (346)
T ss_pred HHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCc-cCCCceEEeeccccc---------CCCCCCccCC
Confidence 7888888999999999999986533 245677 567999999987211 1124466889
Q ss_pred ccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHH----HHHHHHh
Q 000645 498 WSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT----VRKAVEN 573 (1377)
Q Consensus 498 fSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~----Ik~~L~~ 573 (1377)
||++||..+++.||||+|||.+|.+ ....+.|..++|||||||+|||++|||+|+++..+|.+++.+ ||++|++
T Consensus 237 ~S~~G~~~~~~~~pdi~apG~~i~s--~~~~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ 314 (346)
T cd07475 237 FSSWGPTPDLDLKPDITAPGGNIYS--TVNDNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMN 314 (346)
T ss_pred CcCCCCCcccCcCCeEEeCCCCeEE--ecCCCceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999943 444577889999999999999999999999988889999887 7888899
Q ss_pred cCccCCCC-----CCCCCcccccccCHHHHHH
Q 000645 574 TSVPIGAL-----AEDKLSTGHGLLQVDKAYE 600 (1377)
Q Consensus 574 TA~~l~~~-----~~~~~~~G~GlIna~kAv~ 600 (1377)
||.+.... .+.+..+|+|+||+.+|++
T Consensus 315 ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 315 TATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 99843221 1334567999999999974
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-39 Score=359.29 Aligned_cols=238 Identities=26% Similarity=0.323 Sum_probs=193.9
Q ss_pred eEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCCC
Q 000645 287 VWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPE 366 (1377)
Q Consensus 287 V~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n 366 (1377)
|+||||||| ++.+|++|.+...... .+ ... ...|..+|||||||||++..++
T Consensus 1 V~VavIDsG---vd~~hp~l~~~~~~~~----------------~~----~~~-----~~~~~~~HGT~vAgiia~~~~~ 52 (239)
T cd05561 1 VRVGMIDTG---IDTAHPALSAVVIARL----------------FF----AGP-----GAPAPSAHGTAVASLLAGAGAQ 52 (239)
T ss_pred CEEEEEeCC---CCCCCcccccCccccc----------------cC----CCC-----CCCCCCCCHHHHHHHHhCCCCC
Confidence 689999999 5568888865332110 00 000 1346789999999999998765
Q ss_pred CCCcccccCCCeEEEEEEccCCC-CCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEEE
Q 000645 367 EPLLNGIAPGAQLISCKIGDTRL-GSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFV 445 (1377)
Q Consensus 367 ~~g~~GVAP~AkIi~vkV~d~~~-g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GVivV 445 (1377)
. .||||+|+|+.+|+++... +...+...+++||+||+++|++|||||||+.. ...++.+++.+.++|+++|
T Consensus 53 ~---~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~ai~~a~~~gilvv 124 (239)
T cd05561 53 R---PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAAAVAAAAARGMVLV 124 (239)
T ss_pred C---cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEE
Confidence 4 8999999999999987643 12235678999999999999999999999743 2467778888889999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccc
Q 000645 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525 (1377)
Q Consensus 446 ~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~ 525 (1377)
+||||+|... ...+|+ ..+++|+||+++ ..+.++.||++|+. +||+|||.+|.+ .
T Consensus 125 ~AaGN~g~~~-~~~~Pa-~~~~vi~V~a~~---------------~~~~~~~~s~~g~~------~di~ApG~~i~~--~ 179 (239)
T cd05561 125 AAAGNDGPAA-PPLYPA-AYPGVIAVTAVD---------------ARGRLYREANRGAH------VDFAAPGVDVWV--A 179 (239)
T ss_pred EecCCCCCCC-CccCcc-cCCCceEEEeec---------------CCCCccccCCCCCc------ceEEccccceec--c
Confidence 9999999753 346898 567999999987 56778999999997 899999999943 4
Q ss_pred cCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCCCCCCccccc
Q 000645 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKLSTGHG 591 (1377)
Q Consensus 526 ~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~G 591 (1377)
...+.|..++|||||||+|||++||++|+ +| +++.+|+++|++||++++... .+..+|||
T Consensus 180 ~~~~~~~~~sGTS~AaP~vaG~aAll~~~----~p-~~~~~i~~~L~~ta~~~g~~~-~d~~~G~G 239 (239)
T cd05561 180 APGGGYRYVSGTSFAAPFVTAALALLLQA----SP-LAPDDARARLAATAKDLGPPG-RDPVFGYG 239 (239)
T ss_pred cCCCCEEEeCCHHHHHHHHHHHHHHHHhc----CC-CCHHHHHHHHHHHhhccCCCC-cCCCcCCC
Confidence 56678999999999999999999999998 77 999999999999999887554 56789998
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=7.2e-39 Score=366.56 Aligned_cols=260 Identities=25% Similarity=0.324 Sum_probs=197.3
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCc------cccccccccccCccccccccc----------ccC------CCcc
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNY------KTERKHGVFSKLDACTFVANV----------YDE------GNVL 343 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y------~~~~~~g~~~~~d~~~~~~n~----------~d~------g~~~ 343 (1377)
+|+||||||| +|++|+||.+....... ......|+.++..+++|..++ .+. .+..
T Consensus 2 ~V~VaviDtG---id~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (291)
T cd07483 2 TVIVAVLDSG---VDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV 78 (291)
T ss_pred ceEEEEEeCC---CCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCcccccccccccccc
Confidence 6899999999 67799999875422211 122234445555566664321 110 0111
Q ss_pred ccCCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCC
Q 000645 344 SIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLL 423 (1377)
Q Consensus 344 ~~~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~ 423 (1377)
..+.+.++|||||||||||..++..++.||||+|+|+++|+++...+ ...++++||+||+++|++|||||||.....
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~---~~~~i~~Ai~~a~~~g~~IiN~S~G~~~~~ 155 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDE---RDKDIANAIRYAVDNGAKVINMSFGKSFSP 155 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCc---CHHHHHHHHHHHHHCCCcEEEeCCCCCCCC
Confidence 22346899999999999999888888999999999999999864322 456899999999999999999999975332
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEecCCCCCCCC-CCCCCCC-------CCCCeEEEeeeeCcccccCccccccCCCCCCc
Q 000645 424 PDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALN-TVGAPGG-------TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLE 495 (1377)
Q Consensus 424 ~~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~-tvg~Pa~-------~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~ 495 (1377)
....++.+++.+.++|+++|+||||+|...+ ...+|+. ..+++|+|||++.. ......
T Consensus 156 --~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------------~~~~~~ 221 (291)
T cd07483 156 --NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------------YENNLV 221 (291)
T ss_pred --ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------------CCcccc
Confidence 2345777888889999999999999997543 2335543 34789999998621 011247
Q ss_pred ccccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcC
Q 000645 496 YTWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTS 575 (1377)
Q Consensus 496 asfSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA 575 (1377)
+.||++|+. ++||+|||..|.+ ....+.|..++|||||||+|||++||++|+ +|.+++.+||++|++||
T Consensus 222 ~~~Sn~G~~-----~vdi~APG~~i~s--~~~~~~~~~~sGTS~AaP~vaG~aAl~~s~----~p~lt~~~v~~~L~~ta 290 (291)
T cd07483 222 ANFSNYGKK-----NVDVFAPGERIYS--TTPDNEYETDSGTSMAAPVVSGVAALIWSY----YPNLTAKEVKQIILESG 290 (291)
T ss_pred cccCCCCCC-----ceEEEeCCCCeEe--ccCcCCeEeeccHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhC
Confidence 889999974 4999999999944 456678999999999999999999999999 78999999999999998
Q ss_pred c
Q 000645 576 V 576 (1377)
Q Consensus 576 ~ 576 (1377)
.
T Consensus 291 ~ 291 (291)
T cd07483 291 V 291 (291)
T ss_pred C
Confidence 4
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-38 Score=363.60 Aligned_cols=283 Identities=30% Similarity=0.331 Sum_probs=211.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCC--------ccccCCCCCCcHHHH
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGN--------VLSIVTDSSPHGTHV 356 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~--------~~~~~~D~~gHGThV 356 (1377)
.||+|||||+| ++++|++|.+... .+.+... ++++..+..+... ......|..+|||||
T Consensus 2 ~gV~VaViDsG---i~~~hp~l~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~v 68 (295)
T cd07474 2 KGVKVAVIDTG---IDYTHPDLGGPGF-PNDKVKG---------GYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHV 68 (295)
T ss_pred CCCEEEEEECC---cCCCCcccccCCC-CCCceee---------eeECccCCCCcccccccccccccCCCCCCCCcHHHH
Confidence 38999999999 5568888874320 0011111 1111111111000 112245689999999
Q ss_pred HHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHH
Q 000645 357 AGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEA 436 (1377)
Q Consensus 357 AGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~ 436 (1377)
||+|+|..++..++.||||+|+|+++|+++..... +...++++++|+++++++|||||||...... ......+++.
T Consensus 69 Agiiag~~~n~~~~~Giap~a~i~~~~~~~~~~~~--~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~~--~~~~~~~~~~ 144 (295)
T cd07474 69 AGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSG--TTDVIIAAIEQAVDDGMDVINLSLGSSVNGP--DDPDAIAINN 144 (295)
T ss_pred HHHHhcCCCccCceEeECCCCeEEEEEeecCCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC--CCHHHHHHHH
Confidence 99999998888889999999999999999743332 5678999999999999999999999765432 2345666777
Q ss_pred HhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEec
Q 000645 437 VNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516 (1377)
Q Consensus 437 a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~AP 516 (1377)
+.++|++||+||||+|.......+|+ ..+++|+|||.+.... .........+|+.|+..+..+||||+||
T Consensus 145 ~~~~gil~V~aAGN~g~~~~~~~~pa-~~~~~i~Vga~~~~~~---------~~~~~~~~~~s~~~~~~~~~~kpdv~ap 214 (295)
T cd07474 145 AVKAGVVVVAAAGNSGPAPYTIGSPA-TAPSAITVGASTVADV---------AEADTVGPSSSRGPPTSDSAIKPDIVAP 214 (295)
T ss_pred HHhcCCEEEEECCCCCCCCCcccCCC-cCCCeEEEeeeeccCc---------CCCCceeccCCCCCCCCCCCcCCCEECC
Confidence 78899999999999998877777888 6789999999862111 1122223344555667788999999999
Q ss_pred CCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCCCC---CCccccccc
Q 000645 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAED---KLSTGHGLL 593 (1377)
Q Consensus 517 G~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~~~---~~~~G~GlI 593 (1377)
|.+|.+......+.|..++|||||||+|||++|||+++ +|.+++.+||++|++||++....... +..+|||+|
T Consensus 215 G~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~----~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l 290 (295)
T cd07474 215 GVDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQA----HPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRV 290 (295)
T ss_pred cCceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhh----CCCCCHHHHHHHHHhhCcccccCCCCcCChhccCccee
Confidence 99995544433467899999999999999999999999 78999999999999999988754322 478999999
Q ss_pred CHHHH
Q 000645 594 QVDKA 598 (1377)
Q Consensus 594 na~kA 598 (1377)
|+.+|
T Consensus 291 ~~~~A 295 (295)
T cd07474 291 DALRA 295 (295)
T ss_pred ccccC
Confidence 99876
No 13
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.6e-38 Score=359.46 Aligned_cols=245 Identities=25% Similarity=0.273 Sum_probs=197.1
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
+|+|||||+| ++.+|++|.+..... + ..+ .. ......|..+|||||||||+|...
T Consensus 11 gV~VaViDsG---id~~hp~l~~~~~~~-~---~~~------------~~------~~~~~~~~~gHGT~VAgii~g~~~ 65 (267)
T cd07476 11 RITIAILDGP---VDRTHPCFRGANLTP-L---FTY------------AA------AACQDGGASAHGTHVASLIFGQPC 65 (267)
T ss_pred CeEEEEeCCC---cCCCChhhCCCcccc-c---cCc------------cc------cCCCCCCCCCcHHHHHHHHhcCCC
Confidence 8999999999 455788887643110 0 000 00 011225678999999999999864
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEEE
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFV 445 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GVivV 445 (1377)
+ ++.||||+|+|+.++++....... +..++++||+||+++|++|||||||.........+.+..+++.+.++|+++|
T Consensus 66 ~--~~~GvAp~a~i~~~~v~~~~~~~~-~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv 142 (267)
T cd07476 66 S--SVEGIAPLCRGLNIPIFAEDRRGC-SQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIV 142 (267)
T ss_pred C--CceeECcCCeEEEEEEEeCCCCCC-CHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEE
Confidence 3 578999999999999987644332 3568999999999999999999999865444455677888888899999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccc
Q 000645 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525 (1377)
Q Consensus 446 ~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~ 525 (1377)
+||||+|.. ...+|+ ..+++|+|||++ ..+.+..||++|+.. .++||+|||.+|. ..
T Consensus 143 ~AaGN~g~~--~~~~Pa-~~~~vi~Vga~~---------------~~~~~~~~s~~g~~~---~~~~l~ApG~~i~--~~ 199 (267)
T cd07476 143 AAAGNEGCA--CLHVPA-ALPSVLAVGAMD---------------DDGLPLKFSNWGADY---RKKGILAPGENIL--GA 199 (267)
T ss_pred EecCCCCCC--CCCCcc-cCCceEEEEeec---------------CCCCeeeecCCCCCC---CCceEEecCCCce--ee
Confidence 999999975 456898 568999999997 456788999999863 2689999999994 45
Q ss_pred cCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCC
Q 000645 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGAL 581 (1377)
Q Consensus 526 ~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~ 581 (1377)
...+.|..++|||||||+|||++|||+|.++..++.+++.+||++|++||++++..
T Consensus 200 ~~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 200 ALGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred cCCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 56678999999999999999999999999887777899999999999999998653
No 14
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-38 Score=365.07 Aligned_cols=277 Identities=27% Similarity=0.304 Sum_probs=211.2
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccc---cCCCccccCCCCCCcHHHHHHHHh
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVY---DEGNVLSIVTDSSPHGTHVAGIAT 361 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~---d~g~~~~~~~D~~gHGThVAGIIA 361 (1377)
.+|+|||||+| ++.+|++|.+.... ..+....+ ++..+.+ ........+.|..+|||||||||+
T Consensus 13 ~gv~VaViDsG---id~~hp~l~~~~~~-~~~~~~~~---------d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia 79 (312)
T cd07489 13 KGVKVAVVDTG---IDYTHPALGGCFGP-GCKVAGGY---------DFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIA 79 (312)
T ss_pred CCCEEEEEECC---CCCCChhhhcCCCC-Cceecccc---------ccCCcccccccCCCCCCCCCCCCCcHHHHHHHHh
Confidence 39999999999 56688888764321 11111111 1111111 001111234567999999999999
Q ss_pred ccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCC
Q 000645 362 AFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHR 441 (1377)
Q Consensus 362 g~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~G 441 (1377)
+..++ .++.||||+|+|+.+|+++..... ....+++++.++++++++|||||||....+.. .....+.+.+.++|
T Consensus 80 ~~~~~-~~~~GiAp~a~i~~~~v~~~~~~~--~~~~~~~ai~~a~~~~~~iIn~S~g~~~~~~~--~~~~~~~~~~~~~g 154 (312)
T cd07489 80 ANPNA-YGFTGVAPEATLGAYRVFGCSGST--TEDTIIAAFLRAYEDGADVITASLGGPSGWSE--DPWAVVASRIVDAG 154 (312)
T ss_pred cCCCC-CceEEECCCCEEEEEEeecCCCCC--CHHHHHHHHHHHHhcCCCEEEeCCCcCCCCCC--CHHHHHHHHHHHCC
Confidence 99876 689999999999999998854333 56779999999999999999999998765443 23444555666789
Q ss_pred cEEEEecCCCCCCCC-CCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCce
Q 000645 442 LVFVSSAGNSGPALN-TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAV 520 (1377)
Q Consensus 442 VivV~AAGN~G~~~~-tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I 520 (1377)
+++|+||||+|.... ...+|+ ..+++|+||+++ +.||++||+.+...||||+|||+.+
T Consensus 155 v~iv~aaGN~g~~~~~~~~~p~-~~~~vi~Vga~~--------------------~~~s~~g~~~~~~~kpdv~ApG~~i 213 (312)
T cd07489 155 VVVTIAAGNDGERGPFYASSPA-SGRGVIAVASVD--------------------SYFSSWGPTNELYLKPDVAAPGGNI 213 (312)
T ss_pred CEEEEECCCCCCCCCCcccCCc-cCCCeEEEEEec--------------------CCccCCCCCCCCCcCccEEcCCCCE
Confidence 999999999987532 235676 678999999974 6789999999999999999999999
Q ss_pred eeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCC--------CCCCcccccc
Q 000645 521 APVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALA--------EDKLSTGHGL 592 (1377)
Q Consensus 521 ~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~--------~~~~~~G~Gl 592 (1377)
.+......+.|..++|||||||+|||++||+++++ ++.+++.+|+++|.+||.++.... .++..+|||+
T Consensus 214 ~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~---~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~ 290 (312)
T cd07489 214 LSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQAR---HGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGL 290 (312)
T ss_pred EEeeeCCCCceEeeccHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcce
Confidence 54433334458999999999999999999999994 389999999999999998875332 2346899999
Q ss_pred cCHHHHHHHHH
Q 000645 593 LQVDKAYEYVQ 603 (1377)
Q Consensus 593 Ina~kAv~~l~ 603 (1377)
||+.+|++...
T Consensus 291 vn~~~a~~~~~ 301 (312)
T cd07489 291 VNAYKALYATT 301 (312)
T ss_pred eeHHHHhcCCc
Confidence 99999998643
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=6.5e-38 Score=353.34 Aligned_cols=248 Identities=27% Similarity=0.295 Sum_probs=196.4
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.||+|||||+| ++++|++|.+.... +. . ...+...++++..+....+.|..+|||||||||+|..
T Consensus 2 ~GV~VaViDsG---i~~~hp~l~~~~~~--~~---~-------~~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~~ 66 (264)
T cd07481 2 TGIVVANIDTG---VDWTHPALKNKYRG--WG---G-------GSADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGND 66 (264)
T ss_pred CCcEEEEEeCC---CCCCChhHhhcccc--cC---C-------CCcccccccccCCCCCCCCCCCCCchhhhhhheeecC
Confidence 38999999999 56688888764210 00 0 0011112222222223345678899999999999987
Q ss_pred CCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHh------------CCCcEEEeCcCCCCCCCChHHHHHH
Q 000645 365 PEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE------------HKCDLINMSYGEPTLLPDYGRFIDL 432 (1377)
Q Consensus 365 ~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~------------~gadVINmS~G~~~~~~~~~~~~~~ 432 (1377)
.+.. ..||||+|+|+.+|+++...+ ...+++++++|+++ ++++|||||||.... ....+..
T Consensus 67 ~~~~-~~GvAp~a~i~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~ 139 (264)
T cd07481 67 GDGQ-QIGVAPGARWIACRALDRNGG---NDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---DNEWLQP 139 (264)
T ss_pred CCCC-ceEECCCCeEEEEEeecCCCC---cHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---CchHHHH
Confidence 6543 499999999999999987542 45789999999875 789999999998755 2245666
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCC-CCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCce
Q 000645 433 VNEAVNKHRLVFVSSAGNSGPALNTVG-APGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGV 511 (1377)
Q Consensus 433 a~~~a~~~GVivV~AAGN~G~~~~tvg-~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~Kp 511 (1377)
+++.+..+|++||+||||+|....... +|+ ..+++|+|||++ ..+.++.||++||..+++.||
T Consensus 140 ~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa-~~~~vi~Vga~~---------------~~~~~~~~S~~g~~~~~~~~~ 203 (264)
T cd07481 140 AVAAWRAAGIFPVFAAGNDGPRCSTLNAPPA-NYPESFAVGATD---------------RNDVLADFSSRGPSTYGRIKP 203 (264)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCcCCCC-cCCceEEEEecC---------------CCCCCccccCCCCCCCCCcCc
Confidence 777888899999999999997755444 788 668999999987 567889999999999999999
Q ss_pred EEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHhcCc
Q 000645 512 CISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIP--VSPYTVRKAVENTSV 576 (1377)
Q Consensus 512 DI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~--lTp~~Ik~~L~~TA~ 576 (1377)
||+|||.+|. +.+..+.|..++|||||||+|||++|||+|+ +|. +++.+|+.+|++||+
T Consensus 204 dv~ApG~~i~--s~~~~~~~~~~~GTS~AaP~vaG~aAll~~~----~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 204 DISAPGVNIR--SAVPGGGYGSSSGTSMAAPHVAGVAALLWSA----NPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEEECCCCeE--EecCCCceEeeCcHHHHHHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHhcC
Confidence 9999999994 4555678899999999999999999999999 677 999999999999985
No 16
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.2e-38 Score=352.29 Aligned_cols=249 Identities=24% Similarity=0.278 Sum_probs=193.1
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
||+||||||| +++.|++|.......+.+.. .+.+| .++... ...|..+|||||||||+|..+
T Consensus 1 Gv~VaviDsG---i~~~h~~~~~~~~~~~~~i~---------~~~~~----~~~~~~--~~~~~~~HGT~vagiia~~~~ 62 (261)
T cd07493 1 GITIAVIDAG---FPKVHEAFAFKHLFKNLRIL---------GEYDF----VDNSNN--TNYTDDDHGTAVLSTMAGYTP 62 (261)
T ss_pred CCEEEEEccC---CCccCcchhhhccccCCcee---------eeecC----ccCCCC--CCCCCCCchhhhheeeeeCCC
Confidence 6899999999 55577777421111111111 11122 221111 125778999999999999875
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCC-----------hHHHHHHHH
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPD-----------YGRFIDLVN 434 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~-----------~~~~~~~a~ 434 (1377)
+ .+.||||+|+|+.+|+.+...........++.|++|+.+++++|||||||....... ....+..++
T Consensus 63 ~--~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~ 140 (261)
T cd07493 63 G--VMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAA 140 (261)
T ss_pred C--CEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHH
Confidence 3 479999999999999976543333345678999999999999999999998654322 123456677
Q ss_pred HHHhcCCcEEEEecCCCCCCC-CCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEE
Q 000645 435 EAVNKHRLVFVSSAGNSGPAL-NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCI 513 (1377)
Q Consensus 435 ~~a~~~GVivV~AAGN~G~~~-~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI 513 (1377)
+.+.++|+++|+||||+|... ....+|+ ..+++|+|||.+ ..+.++.||++||..++..|||+
T Consensus 141 ~~a~~~gilvv~AAGN~g~~~~~~~~~Pa-~~~~vi~Vga~~---------------~~~~~~~~S~~G~~~~~~~~pdi 204 (261)
T cd07493 141 NIAASKGMLVVNSAGNEGSTQWKGIGAPA-DAENVLSVGAVD---------------ANGNKASFSSIGPTADGRLKPDV 204 (261)
T ss_pred HHHHhCCeEEEEECCCCCCCCCCcccCcc-cCCceEEEEEec---------------cCCCCCccCCcCCCCCCCcCCce
Confidence 888899999999999999763 2467898 678999999997 45678999999999999999999
Q ss_pred EecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 514 SAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 514 ~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
+|||..+.+ ....+.|..++|||||||+|||++|||++. +|.+++.+|+++|..||+
T Consensus 205 ~a~G~~~~~--~~~~~~~~~~sGTS~AaP~vaG~aAll~~~----~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 205 MALGTGIYV--INGDGNITYANGTSFSCPLIAGLIACLWQA----HPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EecCCCeEE--EcCCCcEEeeCcHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhcC
Confidence 999999954 445667899999999999999999999999 789999999999999984
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-37 Score=347.23 Aligned_cols=247 Identities=31% Similarity=0.397 Sum_probs=198.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.||+|||||+| ++.+|++|.+...... .+.... .......|..+|||||||||+|..
T Consensus 2 ~gv~VaviDsG---v~~~h~~l~~~~~~~~----------------~~~~~~----~~~~~~~d~~~HGT~vAgiiag~~ 58 (264)
T cd07487 2 KGITVAVLDTG---IDAPHPDFDGRIIRFA----------------DFVNTV----NGRTTPYDDNGHGTHVAGIIAGSG 58 (264)
T ss_pred CCcEEEEEeCC---CCCCCccccccccccc----------------cccccc----cCCCCCCCCCCchHHHHHHHhcCC
Confidence 37999999999 4568888876442110 000000 111223567899999999999998
Q ss_pred CC-CCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhC----CCcEEEeCcCCCCCCCChHHHHHHHHHHHhc
Q 000645 365 PE-EPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH----KCDLINMSYGEPTLLPDYGRFIDLVNEAVNK 439 (1377)
Q Consensus 365 ~n-~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~----gadVINmS~G~~~~~~~~~~~~~~a~~~a~~ 439 (1377)
++ ..++.||||+|+|+.+|+++..... +...+++|++|++++ +++|||||||...........+..+++.+.+
T Consensus 59 ~~~~~~~~Giap~a~i~~~~v~~~~~~~--~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~ 136 (264)
T cd07487 59 RASNGKYKGVAPGANLVGVKVLDDSGSG--SESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWD 136 (264)
T ss_pred cccCCceEEECCCCeEEEEEeecCCCCc--cHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHHHHHHh
Confidence 76 5578999999999999998875433 557899999999998 9999999999876533333456666777778
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCC----cccccCCCCCCCCCCceEEEe
Q 000645 440 HRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGL----EYTWSSRGPTADGDLGVCISA 515 (1377)
Q Consensus 440 ~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~----~asfSSrGP~~dG~~KpDI~A 515 (1377)
+|++||+||||+|.....+.+|+ ..+++|+|||++. .+. .+.||++||+.+++.||||+|
T Consensus 137 ~gilvv~aaGN~~~~~~~~~~p~-~~~~vi~Vga~~~---------------~~~~~~~~~~~s~~G~~~~~~~~~di~a 200 (264)
T cd07487 137 AGIVVVVAAGNSGPGPGTITSPG-NSPKVITVGAVDD---------------NGPHDDGISYFSSRGPTGDGRIKPDVVA 200 (264)
T ss_pred CCCEEEEeCCCCCCCCCccCCcc-cCCCceEEEeccC---------------CCCCCccccccccCCCCCCCCcCCCEEc
Confidence 99999999999998877778898 6789999999972 333 789999999999999999999
Q ss_pred cCCceeecc-------ccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 516 PGGAVAPVS-------TWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 516 PG~~I~s~~-------~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
||..|.+.. ....+.+..++|||||||+|||++|||++. +|.+++.+||.+|++||+
T Consensus 201 pG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~----~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 201 PGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQA----NPILTPDEVKCILRDTAT 264 (264)
T ss_pred cccceEeccccccccCCCCCCceEeccccchHHHHHHHHHHHHHHH----CcCCCHHHHHHHHHhhcC
Confidence 999995431 344567889999999999999999999999 779999999999999984
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-37 Score=355.41 Aligned_cols=257 Identities=25% Similarity=0.215 Sum_probs=191.4
Q ss_pred EEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCCCC
Q 000645 288 WRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEE 367 (1377)
Q Consensus 288 ~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n~ 367 (1377)
+||||||| ++..|++|......... + .+... ...|..||||||||||++...+.
T Consensus 2 ~VaviDtG---i~~~hp~l~~~~~~~~~----------------~----~~~~~---~~~d~~gHGT~vAgiia~~~~~~ 55 (291)
T cd04847 2 IVCVLDSG---INRGHPLLAPALAEDDL----------------D----SDEPG---WTADDLGHGTAVAGLALYGDLTL 55 (291)
T ss_pred EEEEecCC---CCCCChhhhhhhccccc----------------c----ccCCC---CcCCCCCChHHHHHHHHcCcccC
Confidence 69999999 55688888765421100 0 00000 03588999999999999877666
Q ss_pred CCcccccCCCeEEEEEEccCCC--CCccChhhHHHHHHHHHhCC---CcEEEeCcCCCCCCCC--hHHHHHHHHHHHhcC
Q 000645 368 PLLNGIAPGAQLISCKIGDTRL--GSMETGTGLTRAFIAAVEHK---CDLINMSYGEPTLLPD--YGRFIDLVNEAVNKH 440 (1377)
Q Consensus 368 ~g~~GVAP~AkIi~vkV~d~~~--g~~~t~s~ii~Ai~~Ai~~g---adVINmS~G~~~~~~~--~~~~~~~a~~~a~~~ 440 (1377)
.+..|+||+|+|+.+|+++..+ ....+..++++||+|+++++ ++|||||||....... ...+...+.+.+.++
T Consensus 56 ~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~ 135 (291)
T cd04847 56 PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAALDQLAAEY 135 (291)
T ss_pred CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHHHHHhccC
Confidence 6789999999999999998764 12225578999999999853 4999999998755322 123445566677899
Q ss_pred CcEEEEecCCCCCCCCCC----------CCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCc
Q 000645 441 RLVFVSSAGNSGPALNTV----------GAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLG 510 (1377)
Q Consensus 441 GVivV~AAGN~G~~~~tv----------g~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~K 510 (1377)
|++||+||||+|...... ..|+ ..+++|+|||++....... ++............||++||..++.+|
T Consensus 136 gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa-~~~~vItVgA~~~~~~~~~-~s~~~~~~~~~~~~fs~~Gp~~~~~~K 213 (291)
T cd04847 136 DVLFVVSAGNLGDDDAADGPPRIQDDEIEDPA-DSVNALTVGAITSDDDITD-RARYSAVGPAPAGATTSSGPGSPGPIK 213 (291)
T ss_pred CeEEEEECCCCCccccccccccccccccCCHH-HhhhheeeeeeecCccCCC-cccccccccccCCCccccCCCCCCCcC
Confidence 999999999999875542 3577 6789999999986544321 111111111123349999999999999
Q ss_pred eEEEecCCceeecc----------------ccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 000645 511 VCISAPGGAVAPVS----------------TWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574 (1377)
Q Consensus 511 pDI~APG~~I~s~~----------------~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~T 574 (1377)
|||+|||++|.+.. ....+.|..++|||||||+|||++|||+++ .|.+++.+||++|++|
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~----~p~~t~~~ikalL~~s 289 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAE----LPELSPETIRALLIHS 289 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHhh
Confidence 99999999995422 234567899999999999999999999999 6789999999999999
Q ss_pred Cc
Q 000645 575 SV 576 (1377)
Q Consensus 575 A~ 576 (1377)
|+
T Consensus 290 A~ 291 (291)
T cd04847 290 AE 291 (291)
T ss_pred cC
Confidence 84
No 19
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-37 Score=347.54 Aligned_cols=249 Identities=28% Similarity=0.312 Sum_probs=188.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCC-CCCccccccccccccCccccccccccc------------CCCccccCCCCCCc
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAP-LTNYKTERKHGVFSKLDACTFVANVYD------------EGNVLSIVTDSSPH 352 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~-~~~y~~~~~~g~~~~~d~~~~~~n~~d------------~g~~~~~~~D~~gH 352 (1377)
+|+||||||| ++++|++|.+... ..+|....... .++.....+..+ ..+......+..+|
T Consensus 1 gV~VaviDtG---i~~~Hp~l~~~~~~g~d~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~H 73 (285)
T cd07496 1 GVVVAVLDTG---VLFHHPDLAGVLLPGYDFISDPAIA----NDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWH 73 (285)
T ss_pred CCEEEEecCC---CCCCCcchhhccccCcccccCcccc----cCCCCCCCCCCCcccccccccccccccccCCCCCCCCC
Confidence 6899999999 5668888876541 11221111000 000000001111 11122334677899
Q ss_pred HHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHH----------hCCCcEEEeCcCCCCC
Q 000645 353 GTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV----------EHKCDLINMSYGEPTL 422 (1377)
Q Consensus 353 GThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai----------~~gadVINmS~G~~~~ 422 (1377)
||||||||+|..+++.++.||||+|+|+++|+++..++ +..++++|++|++ .++++|||||||....
T Consensus 74 GT~vAgiiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~---~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~ 150 (285)
T cd07496 74 GTHVAGTIAAVTNNGVGVAGVAWGARILPVRVLGKCGG---TLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGA 150 (285)
T ss_pred HHHHHHHHhCcCCCCCCceeecCCCeEEEEEEecCCCC---cHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCC
Confidence 99999999999887889999999999999999886544 5678999999998 4679999999998654
Q ss_pred CCChHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCC
Q 000645 423 LPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG 502 (1377)
Q Consensus 423 ~~~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrG 502 (1377)
. ...+..+++.+.++|++||+||||+|... +..+|+ ..+++|+|||++ ..+.++.||++|
T Consensus 151 ~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~-~~~~Pa-~~~~vi~Vga~~---------------~~~~~~~~S~~g 210 (285)
T cd07496 151 C---SATMQNAINDVRARGVLVVVAAGNEGSSA-SVDAPA-NCRGVIAVGATD---------------LRGQRASYSNYG 210 (285)
T ss_pred C---CHHHHHHHHHHHHCCCEEEEECCCCCCCC-CccCCC-CCCceEEEeccC---------------CCCCcccccCCC
Confidence 2 23466677777889999999999999764 467898 567999999987 567899999999
Q ss_pred CCCCCCCceEEEecCCceeecccc-------------CCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Q 000645 503 PTADGDLGVCISAPGGAVAPVSTW-------------TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRK 569 (1377)
Q Consensus 503 P~~dG~~KpDI~APG~~I~s~~~~-------------~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~ 569 (1377)
+. +|++|||++|.+.... ....|..++|||||||+|||++||++++ +|.+++.+|++
T Consensus 211 ~~------vdi~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~----~p~lt~~~v~~ 280 (285)
T cd07496 211 PA------VDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSV----NPSLTPAQIES 280 (285)
T ss_pred CC------CCEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHh----CCCCCHHHHHH
Confidence 97 8999999998532221 1345788999999999999999999999 78999999999
Q ss_pred HHHhc
Q 000645 570 AVENT 574 (1377)
Q Consensus 570 ~L~~T 574 (1377)
+|++|
T Consensus 281 ~L~~t 285 (285)
T cd07496 281 LLQST 285 (285)
T ss_pred HHHhC
Confidence 99875
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-36 Score=336.10 Aligned_cols=234 Identities=27% Similarity=0.323 Sum_probs=188.9
Q ss_pred eEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCCC
Q 000645 287 VWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPE 366 (1377)
Q Consensus 287 V~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n 366 (1377)
|+|||||+| ++++|++|.+... +. .++ +++++.. ...|..+|||||||||+|..++
T Consensus 1 V~VaviDsG---i~~~hp~l~~~~~---~~-----------~~~----~~~~~~~---~~~~~~~HGT~vAgiiag~~~~ 56 (242)
T cd07498 1 VVVAIIDTG---VDLNHPDLSGKPK---LV-----------PGW----NFVSNND---PTSDIDGHGTACAGVAAAVGNN 56 (242)
T ss_pred CEEEEecCC---CCCCChhhccCcC---cc-----------CCc----cccCCCC---CCCCCCCCHHHHHHHHHhccCC
Confidence 689999999 5557888876310 00 011 1111111 2357789999999999999877
Q ss_pred CCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhc-CCcEEE
Q 000645 367 EPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNK-HRLVFV 445 (1377)
Q Consensus 367 ~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~-~GVivV 445 (1377)
..++.||||+|+|+.+|+++.... .....+.++++|+++++++|||||||...........++.+.+.+.. +|++||
T Consensus 57 ~~~~~Gvap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv 134 (242)
T cd07498 57 GLGVAGVAPGAKLMPVRIADSLGY--AYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVL 134 (242)
T ss_pred CceeEeECCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEE
Confidence 778999999999999999987542 25678999999999999999999999876655556677778888888 999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccc
Q 000645 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525 (1377)
Q Consensus 446 ~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~ 525 (1377)
+||||+|..... +|+ ..+++|+|||.+ ..+.++.||++|+. +|++|||.++.+...
T Consensus 135 ~aaGN~g~~~~~--~pa-~~~~vi~Vga~~---------------~~~~~~~~s~~g~~------~~~~apG~~~~~~~~ 190 (242)
T cd07498 135 FAAGNSGRSVSS--GYA-ANPSVIAVAATD---------------SNDARASYSNYGNY------VDLVAPGVGIWTTGT 190 (242)
T ss_pred EecCCCCCccCC--CCc-CCCCeEEEEEeC---------------CCCCccCcCCCCCC------eEEEeCcCCcccCCc
Confidence 999999977443 788 678999999997 56778999999997 899999999854311
Q ss_pred -------cCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 000645 526 -------WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574 (1377)
Q Consensus 526 -------~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~T 574 (1377)
...+.|..++|||||||+|||++|||++. +|++++.+||++|++|
T Consensus 191 ~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~----~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILSA----NPNLTPAEVEDILTST 242 (242)
T ss_pred cccccccCCCCceEeeCcHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhC
Confidence 34566888999999999999999999998 8899999999999875
No 21
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.7e-37 Score=346.79 Aligned_cols=272 Identities=30% Similarity=0.401 Sum_probs=211.6
Q ss_pred EEEEEcCCCCCCCCCCCCcC-CCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC-C
Q 000645 288 WRVALDTQSLEDEPDHGKLA-DFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN-P 365 (1377)
Q Consensus 288 ~VAVIDTGI~~~d~~h~dL~-~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~-~ 365 (1377)
+||||||| ++++|++|. +... .. ......++.+.........+..+|||||||||++.. .
T Consensus 1 ~V~viDtG---id~~h~~~~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~~~ 62 (282)
T PF00082_consen 1 KVAVIDTG---IDPNHPDFSSGNFI-----WS----------KVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNGGN 62 (282)
T ss_dssp EEEEEESB---BTTTSTTTTCTTEE-----EE----------EEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTTSS
T ss_pred CEEEEcCC---cCCCChhHccCCcc-----cc----------cccceeeccCCCCCcCccccCCCccchhhhhccccccc
Confidence 58999999 556888887 3221 00 000112222222222344678899999999999998 6
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHH-hCCCcEEEeCcCC--CCCCCChHHHHHHHHHHHhcCCc
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV-EHKCDLINMSYGE--PTLLPDYGRFIDLVNEAVNKHRL 442 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai-~~gadVINmS~G~--~~~~~~~~~~~~~a~~~a~~~GV 442 (1377)
++.+..||||+|+|+.+++++... .+...+++++.+++ +.+++|||||||. ...........+.+.+.+.++|+
T Consensus 63 ~~~~~~Gva~~a~l~~~~i~~~~~---~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~ 139 (282)
T PF00082_consen 63 NGPGINGVAPNAKLYSYKIFDNSG---GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAEKKGI 139 (282)
T ss_dssp SSSSETCSSTTSEEEEEECSSTTS---EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHHHTTE
T ss_pred cccccccccccccccccccccccc---cccccccchhhhhhhccCCccccccccccccccccccccccccccccccccCc
Confidence 667889999999999999977654 25678999999999 8999999999988 33333455677888889999999
Q ss_pred EEEEecCCCCCCCCC-CCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCC-CCCCCceEEEecCCce
Q 000645 443 VFVSSAGNSGPALNT-VGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPT-ADGDLGVCISAPGGAV 520 (1377)
Q Consensus 443 ivV~AAGN~G~~~~t-vg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~-~dG~~KpDI~APG~~I 520 (1377)
++|+||||+|..... +.+|+ ..+++|+||+++ ..+.+..||++|+. .+++++|||+|||.++
T Consensus 140 l~v~aaGN~~~~~~~~~~~Pa-~~~~vi~Vg~~~---------------~~~~~~~~s~~g~~~~~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 140 LIVFAAGNNGPNDDRNISFPA-SSPNVITVGAVD---------------NNGQPASYSNYGGPSDDGRIKPDIAAPGGNI 203 (282)
T ss_dssp EEEEE--SSSSBTTBTGEBTT-TSTTSEEEEEEE---------------TTSSBSTTSSBSTTETTCTTCEEEEEECSSE
T ss_pred ceeeccccccccccccccccc-cccccccccccc---------------ccccccccccccccccccccccccccccccc
Confidence 999999999987665 78998 567999999998 45678999999765 4889999999999999
Q ss_pred eeccccCC-ccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCC--CCCCCCcccccccCHHH
Q 000645 521 APVSTWTL-QRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA--LAEDKLSTGHGLLQVDK 597 (1377)
Q Consensus 521 ~s~~~~~~-~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~--~~~~~~~~G~GlIna~k 597 (1377)
.+...... ..+..++|||||||+|||++|+++++ +|.+++.+|+++|++||.+.+. ....+..+|||++|+.+
T Consensus 204 ~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~~----~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~ 279 (282)
T PF00082_consen 204 LSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLSK----YPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEK 279 (282)
T ss_dssp EEEETTTESEEEEEEESHHHHHHHHHHHHHHHHHH----STTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHH
T ss_pred cccccccccccccccCcCCchHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHH
Confidence 43333332 45788999999999999999999998 7899999999999999999882 22345678999999999
Q ss_pred HHH
Q 000645 598 AYE 600 (1377)
Q Consensus 598 Av~ 600 (1377)
|++
T Consensus 280 a~~ 282 (282)
T PF00082_consen 280 ALN 282 (282)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-36 Score=335.85 Aligned_cols=240 Identities=30% Similarity=0.353 Sum_probs=183.6
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
||+|||||+| ++.+|++|.+.... +. +|..+ .........|..+|||||||||+|..+
T Consensus 1 GV~VaviDsG---v~~~hp~l~~~~~~--------~~--------~~~~~---~~~~~~~~~d~~~HGT~vAgiia~~~~ 58 (254)
T cd07490 1 GVTVAVLDTG---VDADHPDLAGRVAQ--------WA--------DFDEN---RRISATEVFDAGGHGTHVSGTIGGGGA 58 (254)
T ss_pred CCEEEEEeCC---CCCCCcchhcccCC--------ce--------eccCC---CCCCCCCCCCCCCcHHHHHHHHhcCCC
Confidence 6899999999 55688888764421 00 11110 001112345778999999999999987
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHH-hcCCcEE
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAV-NKHRLVF 444 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a-~~~GViv 444 (1377)
+ ....||||+|+|+++|+++... ....+++++++|+++++++|||||||..... ... +..+.+.+ ..+|++|
T Consensus 59 ~-~~~~GvAp~a~i~~~~v~~~~~---~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~-~~~~~~~~~~~~g~lv 131 (254)
T cd07490 59 K-GVYIGVAPEADLLHGKVLDDGG---GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDP-LEEAVEALSNQTGALF 131 (254)
T ss_pred C-CCEEEECCCCEEEEEEEecCCC---CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcH-HHHHHHHHHHcCCCEE
Confidence 4 4568999999999999998654 2567899999999999999999999987653 222 33334443 3479999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCC-----------CCCCCCCceEE
Q 000645 445 VSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG-----------PTADGDLGVCI 513 (1377)
Q Consensus 445 V~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrG-----------P~~dG~~KpDI 513 (1377)
|+||||+|.. +..+|+ ..+++|+|||++ ..+....||++| +..+...+||+
T Consensus 132 V~aAGN~g~~--~~~~pa-~~~~vi~Vga~~---------------~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~ 193 (254)
T cd07490 132 VVSAGNEGHG--TSGSPG-SAYAALSVGAVD---------------RDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDV 193 (254)
T ss_pred EEeCCCCCCC--CCCCCc-cCCceeEEeccc---------------ccCCccCccCCcccccccccCCCCCccCCcCceE
Confidence 9999999977 678898 678999999987 345566677666 22345679999
Q ss_pred EecCCceeecc--ccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 514 SAPGGAVAPVS--TWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 514 ~APG~~I~s~~--~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
+|||.+|.+.. ....+.|..++|||||||+|||++||++++ +|.+++.+||++|++||+
T Consensus 194 ~apG~~i~~~~~~~~~~~~~~~~~GTS~AaP~vaG~aAl~~~~----~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 194 AAPGVDVYSARQGANGDGQYTRLSGTSMAAPHVAGVAALLAAA----HPDLSPEQIKDALTETAY 254 (254)
T ss_pred EeccCCeEccccCCCCCCCeeecccHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHhcC
Confidence 99999995411 334567889999999999999999999999 778999999999999984
No 23
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.7e-35 Score=335.39 Aligned_cols=244 Identities=26% Similarity=0.311 Sum_probs=183.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
+|+||||||| ++++|++|.+......|.... +...+..+. ++......|..+|||||||||+|..+
T Consensus 11 gv~IaviDtG---id~~Hp~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~gHGT~VAgiia~~~~ 76 (273)
T cd07485 11 GIIVAVVDTG---VDGTHPDLQGNGDGDGYDPAV--------NGYNFVPNV---GDIDNDVSVGGGHGTHVAGTIAAVNN 76 (273)
T ss_pred CcEEEEEeCC---CCCCChhhccCCCCCCccccc--------CCccccccc---CCcCCCCCCCCCCHHHHHHHHHcccC
Confidence 8999999999 566888888763222222110 111111111 11112235778999999999999876
Q ss_pred CCCC------cccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhc
Q 000645 366 EEPL------LNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNK 439 (1377)
Q Consensus 366 n~~g------~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~ 439 (1377)
+..+ ..|+||+|+|+.+++++..... ....++++|+|+++++++|||||||..... .+......+++.+.+
T Consensus 77 ~~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~--~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~-~~~~~~~~a~~~~~~ 153 (273)
T cd07485 77 NGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYV--GDDAVAAAIVYAADNGAVILQNSWGGTGGG-IYSPLLKDAFDYFIE 153 (273)
T ss_pred CCcceeccccccccCCCCEEEEEEEECCCCCc--cHHHHHHHHHHHHHcCCcEEEecCCCCCcc-ccCHHHHHHHHHHHH
Confidence 5432 2359999999999999875332 567899999999999999999999986531 233445666666666
Q ss_pred C-------CcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceE
Q 000645 440 H-------RLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVC 512 (1377)
Q Consensus 440 ~-------GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpD 512 (1377)
+ |+++|+||||+|..... +|+ ..+++|+||+.+ ..+.++.||++|+. +|
T Consensus 154 ~~~~~~~~g~lvv~AaGN~g~~~~~--~pa-~~~~vi~V~a~~---------------~~~~~~~~S~~g~~------~~ 209 (273)
T cd07485 154 NAGGSPLDGGIVVFSAGNSYTDEHR--FPA-AYPGVIAVAALD---------------TNDNKASFSNYGRW------VD 209 (273)
T ss_pred hcccccCCCeEEEEecCCCCCCCCC--Ccc-cCCCeEEEEecc---------------CCCCcCccccCCCc------eE
Confidence 6 99999999999977443 487 567999999987 56778999999997 89
Q ss_pred EEecCC-ceeeccccC----CccccccCCCchhhHHHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHhc
Q 000645 513 ISAPGG-AVAPVSTWT----LQRRMLMNGTSMASPSACGGIALLISAMKANAIP-VSPYTVRKAVENT 574 (1377)
Q Consensus 513 I~APG~-~I~s~~~~~----~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~-lTp~~Ik~~L~~T 574 (1377)
|+|||. .|.+..... .+.|..++|||||||+|||++|||+++ +|. +++.+||++|++|
T Consensus 210 i~apG~~~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~----~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 210 IAAPGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSK----FPDVFTPEQIRKLLEES 273 (273)
T ss_pred EEeCCCCccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHhC
Confidence 999999 774332222 457889999999999999999999999 667 9999999999886
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.1e-35 Score=338.55 Aligned_cols=272 Identities=25% Similarity=0.319 Sum_probs=197.5
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhcc
Q 000645 284 DGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAF 363 (1377)
Q Consensus 284 ~GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~ 363 (1377)
..||+||||||| ++.+|++|.+... ..+. +. ........+..+ ...|..+|||||||||+|.
T Consensus 6 G~gv~VaviDtG---i~~~hp~l~~~~~-~~~~-------~~-~~~~~~~~~~~~------~~~d~~~HGT~vAgiia~~ 67 (293)
T cd04842 6 GKGQIVGVADTG---LDTNHCFFYDPNF-NKTN-------LF-HRKIVRYDSLSD------TKDDVDGHGTHVAGIIAGK 67 (293)
T ss_pred CcCCEEEEEecC---CCCCCCcccCCCc-CcCc-------cC-cccEEEeeccCC------CCCCCCCCcchhheeeccC
Confidence 349999999999 5568888865332 0000 00 000000001111 1127799999999999999
Q ss_pred CCCCC---CcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhc-
Q 000645 364 NPEEP---LLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNK- 439 (1377)
Q Consensus 364 ~~n~~---g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~- 439 (1377)
.++.. ++.||||+|+|+.+++++.... ......+..+++++.+.+++|||||||..... .+....+.+.+.+.+
T Consensus 68 ~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~-~~~~~~~~~~~~~~~~ 145 (293)
T cd04842 68 GNDSSSISLYKGVAPKAKLYFQDIGDTSGN-LSSPPDLNKLFSPMYDAGARISSNSWGSPVNN-GYTLLARAYDQFAYNN 145 (293)
T ss_pred CcCCCcccccccccccCeEEEEEeeccCcc-ccCCccHHHHHHHHHHhCCEEEeccCCCCCcc-ccchHHHHHHHHHHhC
Confidence 87765 7899999999999999887543 22456788999999999999999999987652 123334444444444
Q ss_pred CCcEEEEecCCCCCCCCC-CCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCC
Q 000645 440 HRLVFVSSAGNSGPALNT-VGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGG 518 (1377)
Q Consensus 440 ~GVivV~AAGN~G~~~~t-vg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~ 518 (1377)
+|+++|+||||+|..... +.+|+ ..+++|+|||++.................+.++.||++||..+++.||||+|||.
T Consensus 146 ~g~lvV~aAGN~g~~~~~~~~~pa-~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG~ 224 (293)
T cd04842 146 PDILFVFSAGNDGNDGSNTIGSPA-TAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLVAPGT 224 (293)
T ss_pred CCeEEEEeCCCCCCCCCccccCcc-cccceEEEeeccCCCcccccccccccCCCCccccccCcCCCCCCCcCCCEECCCC
Confidence 899999999999977553 67888 6789999999985332211111001112345889999999999999999999999
Q ss_pred ceeeccc-------cCCccccccCCCchhhHHHHHHHHHHHHHHhhC-CC---CCCHHHHHHHHHhcCc
Q 000645 519 AVAPVST-------WTLQRRMLMNGTSMASPSACGGIALLISAMKAN-AI---PVSPYTVRKAVENTSV 576 (1377)
Q Consensus 519 ~I~s~~~-------~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~-~p---~lTp~~Ik~~L~~TA~ 576 (1377)
.|.+... .....|..++|||||||+|||++|||+|.++.. .+ .+++..+|++|++||+
T Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 225 GILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9954321 234568899999999999999999999998865 44 7899999999999984
No 25
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.8e-35 Score=332.03 Aligned_cols=233 Identities=30% Similarity=0.371 Sum_probs=191.0
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.+|+|||||+| ++++|++|.+..... ..++ .+.. ....|..+|||||||||++..
T Consensus 28 ~gv~I~viDsG---i~~~h~~l~~~~~~~---------------~~~~----~~~~---~~~~d~~~HGT~vagii~~~~ 82 (260)
T cd07484 28 SGVTVAVVDTG---VDPTHPDLLKVKFVL---------------GYDF----VDND---SDAMDDNGHGTHVAGIIAAAT 82 (260)
T ss_pred CCCEEEEEeCC---CCCCCcccccCCccc---------------ceec----cCCC---CCCCCCCCcHHHHHHHHhCcc
Confidence 39999999999 555788874322111 1111 1111 113477899999999999988
Q ss_pred CCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEE
Q 000645 365 PEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVF 444 (1377)
Q Consensus 365 ~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GViv 444 (1377)
.+..++.|+||+|+|+.+++++....+ +..+++++|+++++++++|||||||... +...+..+++.+.++|++|
T Consensus 83 ~~~~~~~Giap~a~l~~~~v~~~~~~~--~~~~~~~ai~~a~~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilv 156 (260)
T cd07484 83 NNGTGVAGVAPKAKIMPVKVLDANGSG--SLADIANGIRYAADKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVV 156 (260)
T ss_pred CCCCceEeECCCCEEEEEEEECCCCCc--CHHHHHHHHHHHHHCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEE
Confidence 777789999999999999999875433 5678999999999999999999999865 3356777788888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeecc
Q 000645 445 VSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVS 524 (1377)
Q Consensus 445 V~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~ 524 (1377)
|+||||+|.. .+.+|+ ..+++|+||+++ ..+....||++|+. +|++|||..+.+
T Consensus 157 V~aaGN~g~~--~~~~pa-~~~~vi~Vga~~---------------~~~~~~~~s~~g~~------~~~~apG~~i~~-- 210 (260)
T cd07484 157 VAAAGNEGVS--SVSYPA-AYPGAIAVAATD---------------QDDKRASFSNYGKW------VDVSAPGGGILS-- 210 (260)
T ss_pred EEeCCCCCCC--CCCCCC-CCCCeEEEEeeC---------------CCCCcCCcCCCCCC------ceEEeCCCCcEe--
Confidence 9999999976 367898 678999999987 56778999999987 899999999943
Q ss_pred ccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCC
Q 000645 525 TWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIG 579 (1377)
Q Consensus 525 ~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~ 579 (1377)
....+.|..++|||||||+|||++||+++. +| +++.+|+++|++||++++
T Consensus 211 ~~~~~~~~~~~GTS~Aap~vag~~Al~~~~----~p-~t~~~i~~~L~~tA~~~g 260 (260)
T cd07484 211 TTPDGDYAYMSGTSMATPHVAGVAALLYSQ----GP-LSASEVRDALKKTADDIG 260 (260)
T ss_pred ecCCCCEEEeeeHHHHHHHHHHHHHHHHhc----CC-CCHHHHHHHHHHhCccCc
Confidence 444567899999999999999999999998 88 999999999999998763
No 26
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.7e-35 Score=323.61 Aligned_cols=229 Identities=31% Similarity=0.390 Sum_probs=185.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
||+|||||+|| +.+|++|.+... .+.++. ++.+ ....|..+|||||||||++..+
T Consensus 1 gv~V~iiDsGv---~~~h~~l~~~~~----------------~~~~~~----~~~~--~~~~~~~~HGT~vA~ii~~~~~ 55 (229)
T cd07477 1 GVKVAVIDTGI---DSSHPDLKLNIV----------------GGANFT----GDDN--NDYQDGNGHGTHVAGIIAALDN 55 (229)
T ss_pred CCEEEEEcCCC---CCCChhHhcccc----------------Cccccc----CCCC--CCCCCCCCCHHHHHHHHhcccC
Confidence 68999999994 557777765331 111111 1111 2345778999999999999875
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEEE
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFV 445 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GVivV 445 (1377)
+. ++.||||+|+|+.+|+++..... ...+++++++|+++++++|||||||..... ..+..+++.+.++|+++|
T Consensus 56 ~~-~~~giap~a~i~~~~~~~~~~~~--~~~~l~~ai~~a~~~~~~Vin~S~g~~~~~----~~~~~~~~~a~~~giliv 128 (229)
T cd07477 56 GV-GVVGVAPEADLYAVKVLNDDGSG--TYSDIIAGIEWAIENGMDIINMSLGGPSDS----PALREAIKKAYAAGILVV 128 (229)
T ss_pred CC-ccEeeCCCCEEEEEEEECCCCCc--CHHHHHHHHHHHHHCCCCEEEECCccCCCC----HHHHHHHHHHHHCCCEEE
Confidence 54 78999999999999998875433 447899999999999999999999986432 345667777888999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccc
Q 000645 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525 (1377)
Q Consensus 446 ~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~ 525 (1377)
+||||+|.......+|+ ..+++|+||+++ ..+....||++|+. +|++|||.+|. ..
T Consensus 129 ~aaGN~~~~~~~~~~pa-~~~~vi~Vga~~---------------~~~~~~~~s~~g~~------~~~~apg~~i~--~~ 184 (229)
T cd07477 129 AAAGNSGNGDSSYDYPA-KYPSVIAVGAVD---------------SNNNRASFSSTGPE------VELAAPGVDIL--ST 184 (229)
T ss_pred EecCCCCCCCCCccCCC-CCCCEEEEEeec---------------CCCCcCCccCCCCC------ceEEeCCCCeE--Ee
Confidence 99999998766656798 678999999997 56778899999997 89999999994 34
Q ss_pred cCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 000645 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574 (1377)
Q Consensus 526 ~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~T 574 (1377)
+..+.+..++|||||||+|||++|||+|+ .|.+++.+||++|++|
T Consensus 185 ~~~~~~~~~~GTS~Aap~vag~~All~~~----~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPNNDYAYLSGTSMATPHVAGVAALVWSK----RPELTNAQVRQALNKT 229 (229)
T ss_pred cCCCCEEEEccHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhC
Confidence 55577889999999999999999999999 6789999999999876
No 27
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-35 Score=329.74 Aligned_cols=222 Identities=21% Similarity=0.178 Sum_probs=169.7
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.+|+||||||| +|.+|++|.+.... +.+|.....+.........|..||||||||||+
T Consensus 3 ~~V~VaVIDsG---vd~~hpdl~~~i~~----------------~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~--- 60 (247)
T cd07491 3 KRIKVALIDDG---VDILDSDLQGKIIG----------------GKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC--- 60 (247)
T ss_pred CCCEEEEECCC---cCCCchhhcccccc----------------CCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH---
Confidence 37999999999 56689999865311 011111100000011123578899999999995
Q ss_pred CCCCCcccccCCCeEEEEEEccCCCCC----ccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCC--ChHHHHHHHHHHHh
Q 000645 365 PEEPLLNGIAPGAQLISCKIGDTRLGS----METGTGLTRAFIAAVEHKCDLINMSYGEPTLLP--DYGRFIDLVNEAVN 438 (1377)
Q Consensus 365 ~n~~g~~GVAP~AkIi~vkV~d~~~g~----~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~--~~~~~~~~a~~~a~ 438 (1377)
||||+|+|+++|+++..... ..+...+++||+||+++|++|||||||...... .....++.+++.+.
T Consensus 61 -------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~ 133 (247)
T cd07491 61 -------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEAL 133 (247)
T ss_pred -------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHHH
Confidence 68999999999998865421 224568999999999999999999999865321 12456778888888
Q ss_pred cCCcEEEEecCCCCCCCC-CCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecC
Q 000645 439 KHRLVFVSSAGNSGPALN-TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG 517 (1377)
Q Consensus 439 ~~GVivV~AAGN~G~~~~-tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG 517 (1377)
++|+++|+||||+|.... ...+|+ ..+++|+|||.+ .++.++.||++|+. +|++|||
T Consensus 134 ~~GilvvaaAGN~g~~~~~~~~~pa-~~~~Vi~VgA~~---------------~~g~~~~~S~~g~~------vd~~APG 191 (247)
T cd07491 134 DRGILLFCSASDQGAFTGDTYPPPA-ARDRIFRIGAAD---------------EDGGADAPVGDEDR------VDYILPG 191 (247)
T ss_pred hCCeEEEEecCCCCCcCCCcccCcc-cCCCeEEEEeeC---------------CCCCCccccCCCCc------ceEEeCC
Confidence 999999999999998765 556677 568999999997 56778899999987 8999999
Q ss_pred Cceeeccc-cCCccccccCCCchhhHHHHHHHHHHHHHHhh
Q 000645 518 GAVAPVST-WTLQRRMLMNGTSMASPSACGGIALLISAMKA 557 (1377)
Q Consensus 518 ~~I~s~~~-~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~ 557 (1377)
.+|.+... +..+.|..++|||||||+|||++||+++.++.
T Consensus 192 ~~i~s~~~~~~~~~~~~~sGTS~Atp~vaGvaAL~l~~~~~ 232 (247)
T cd07491 192 ENVEARDRPPLSNSFVTHTGSSVATALAAGLAALILYCVRL 232 (247)
T ss_pred CceecCCcCCCCCCeeeeccHHHHHHHHHHHHHHHHHHHHh
Confidence 99954322 34678999999999999999999999998653
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-35 Score=336.80 Aligned_cols=232 Identities=25% Similarity=0.253 Sum_probs=175.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
+|+|+|||+| ++.+|+||.+..... . +. . ...|+++|||||||||||..
T Consensus 17 gV~VaviDtG---id~~Hpdl~~~~~~~-------~------~~-------~-------~~~d~~gHGT~VAGiIaa~~- 65 (277)
T cd04843 17 GVTFVDIEQG---WNLNHEDLVGNGITL-------I------SG-------L-------TDQADSDHGTAVLGIIVAKD- 65 (277)
T ss_pred cEEEEEecCC---CCCCChhhccccccc-------c------CC-------C-------CCCCCCCCcchhheeeeeec-
Confidence 7999999999 566899998643100 0 00 0 03577899999999999974
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHh----CCCcEEEeCcCCCCCCC-----ChHHHHHHHHHH
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE----HKCDLINMSYGEPTLLP-----DYGRFIDLVNEA 436 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~----~gadVINmS~G~~~~~~-----~~~~~~~~a~~~ 436 (1377)
++.++.||||+|+|+++|+++ ..+++++|.||++ .++.+||||||...... ........+++.
T Consensus 66 n~~G~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~ 137 (277)
T cd04843 66 NGIGVTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRT 137 (277)
T ss_pred CCCceeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHH
Confidence 556889999999999999986 1357788888887 35678999999864321 233445567778
Q ss_pred HhcCCcEEEEecCCCCCCCCCCC----------CCCCCCCCeEEEeeeeCcccccCccccccCCCCC-CcccccCCCCCC
Q 000645 437 VNKHRLVFVSSAGNSGPALNTVG----------APGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEG-LEYTWSSRGPTA 505 (1377)
Q Consensus 437 a~~~GVivV~AAGN~G~~~~tvg----------~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g-~~asfSSrGP~~ 505 (1377)
+.++|+++|+||||++....... +|....+++|+|||++. ..+ .++.|||+|+.
T Consensus 138 a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~--------------~~~~~~~~fSn~G~~- 202 (277)
T cd04843 138 ATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSS--------------TTGHTRLAFSNYGSR- 202 (277)
T ss_pred HHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccC--------------CCCCccccccCCCCc-
Confidence 88999999999999997644332 23323458999999862 223 37999999997
Q ss_pred CCCCceEEEecCCceeeccccC--------CccccccCCCchhhHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHhcCc
Q 000645 506 DGDLGVCISAPGGAVAPVSTWT--------LQRRMLMNGTSMASPSACGGIALLISAMKAN-AIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 506 dG~~KpDI~APG~~I~s~~~~~--------~~~y~~~sGTSmAAP~VAG~aALLls~~~~~-~p~lTp~~Ik~~L~~TA~ 576 (1377)
+||+|||.+|.+..... .+.+..++|||||||+|||++|||++.++++ +|.+++.+||++|..|++
T Consensus 203 -----vdi~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 203 -----VDVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred -----cceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 89999999996533211 1224789999999999999999999987766 499999999999999974
No 29
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=6.1e-35 Score=327.14 Aligned_cols=225 Identities=28% Similarity=0.298 Sum_probs=182.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
||+|||||+|| +.+|++|.+... ...++.+... ..|..+|||||||||++..
T Consensus 26 gv~VaViDsGi---~~~h~~~~~~~~--------------------~~~~~~~~~~----~~d~~~HGT~vAgiia~~~- 77 (255)
T cd04077 26 GVDVYVLDTGI---RTTHVEFGGRAI--------------------WGADFVGGDP----DSDCNGHGTHVAGTVGGKT- 77 (255)
T ss_pred CcEEEEEcCCC---CCCChhhhCCee--------------------eeeecCCCCC----CCCCCccHHHHHHHHHccc-
Confidence 99999999995 557777765321 0111111111 3577899999999999863
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhC-----CCcEEEeCcCCCCCCCChHHHHHHHHHHHhcC
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH-----KCDLINMSYGEPTLLPDYGRFIDLVNEAVNKH 440 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~-----gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~ 440 (1377)
.||||+|+|+++|+++..... ....++.++.|++++ +++|||||||... ...+..+++.+.++
T Consensus 78 -----~GvAp~a~i~~~~i~~~~~~~--~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~ 145 (255)
T cd04077 78 -----YGVAKKANLVAVKVLDCNGSG--TLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-----STALDAAVAAAVNA 145 (255)
T ss_pred -----cCcCCCCeEEEEEEeCCCCCc--CHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHC
Confidence 799999999999999875332 457899999999986 5899999999865 24566677777888
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCce
Q 000645 441 RLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAV 520 (1377)
Q Consensus 441 GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I 520 (1377)
|+++|+||||+|.... ..+|+ ..+++|+|||++ ..+..+.||++|+. +|++|||..|
T Consensus 146 g~liV~aaGN~g~~~~-~~~pa-~~~~vi~Vga~~---------------~~~~~~~~S~~g~~------~~i~apG~~i 202 (255)
T cd04077 146 GVVVVVAAGNSNQDAC-NYSPA-SAPEAITVGATD---------------SDDARASFSNYGSC------VDIFAPGVDI 202 (255)
T ss_pred CCEEEEeCCCCCCCCC-CcCcc-CCCceEEEeccC---------------CCCCccCcccCCCC------CcEEeCCCCe
Confidence 9999999999997643 56788 678999999997 56679999999997 8999999999
Q ss_pred eeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCcc
Q 000645 521 APVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577 (1377)
Q Consensus 521 ~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~ 577 (1377)
.+......+.+..++|||||||+|||++|||++. +|.+++.+||++|++||++
T Consensus 203 ~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~----~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 203 LSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSL----GPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhh----CCCCCHHHHHHHHHhhccC
Confidence 6544434678899999999999999999999999 7899999999999999974
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-34 Score=325.06 Aligned_cols=250 Identities=26% Similarity=0.288 Sum_probs=192.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCC----ccc--cccccccccCcccccccccccCCCccccCCCCCCcHHHHHH
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTN----YKT--ERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAG 358 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~----y~~--~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAG 358 (1377)
.+|+||||||| ++++|++|.+...... +.. ........+..++++ . +......|..+|||||||
T Consensus 2 ~~v~V~iiDtG---id~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~d~~~HGT~va~ 71 (259)
T cd07473 2 GDVVVAVIDTG---VDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNF----V---NNDNDPMDDNGHGTHVAG 71 (259)
T ss_pred CCCEEEEEeCC---CCCCChhhccccccCcccccccCcccCCCCcccCCCcccc----c---CCCCCCCCCCCcHHHHHH
Confidence 37999999999 5568888887542210 000 000111111111111 1 112334688999999999
Q ss_pred HHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHh
Q 000645 359 IATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVN 438 (1377)
Q Consensus 359 IIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~ 438 (1377)
||+|..++..++.||||+|+|+.+|+++..... +..+++++++++++.+++|||+|||.... ...+..+++.+.
T Consensus 72 ii~~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~--~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~~ 145 (259)
T cd07473 72 IIGAVGNNGIGIAGVAWNVKIMPLKFLGADGSG--TTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARAI 145 (259)
T ss_pred HHHCcCCCCCceEEeCCCCEEEEEEEeCCCCCc--CHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHHH
Confidence 999998887788999999999999998875422 56789999999999999999999998755 234556666677
Q ss_pred cCCcEEEEecCCCCCCCC-CCCCCCC-CCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEec
Q 000645 439 KHRLVFVSSAGNSGPALN-TVGAPGG-TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516 (1377)
Q Consensus 439 ~~GVivV~AAGN~G~~~~-tvg~Pa~-~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~AP 516 (1377)
.+|++||+||||+|.... ...+|+. ..+++|+||+.+ ..+..+.||++|+. ++|++||
T Consensus 146 ~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~---------------~~~~~~~~s~~g~~-----~~~~~ap 205 (259)
T cd07473 146 DAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD---------------SNDALASFSNYGKK-----TVDLAAP 205 (259)
T ss_pred hCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC---------------CCCCcCcccCCCCC-----CcEEEec
Confidence 789999999999997632 3356764 357899999987 56778889999986 4999999
Q ss_pred CCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 517 G~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
|..+.+ ....+.|..++|||||||+|||++||++|+ +|.+++.+||++|++||+
T Consensus 206 G~~~~~--~~~~~~~~~~~GTS~AaP~vaG~~All~~~----~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILS--TSPGGGYGYMSGTSMATPHVAGAAALLLSL----NPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEe--ccCCCcEEEeccHhHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCC
Confidence 999844 456678899999999999999999999999 678999999999999984
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=9e-35 Score=331.05 Aligned_cols=246 Identities=24% Similarity=0.317 Sum_probs=182.2
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
.|+||||||| ++++|++|.+..... ++.....+.+ . ..............|..+|||||||+|+|..+
T Consensus 1 ~V~VaviDtG---i~~~hp~l~~~~~~~-~~~~~~~~~~------~--~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~ 68 (294)
T cd07482 1 KVTVAVIDSG---IDPDHPDLKNSISSY-SKNLVPKGGY------D--GKEAGETGDINDIVDKLGHGTAVAGQIAANGN 68 (294)
T ss_pred CcEEEEEeCC---CCCCChhHhhccccc-ccccccCCCc------C--CccccccCCCCcCCCCCCcHhHHHHHHhcCCC
Confidence 4899999999 566888888633211 1100000000 0 00001111123456789999999999999754
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCC-------hHHHHHHHHHHHh
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPD-------YGRFIDLVNEAVN 438 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~-------~~~~~~~a~~~a~ 438 (1377)
+ .||||+|+|+++|+++.... ....+++++|.||++++++|||||||....... ....+..+++.+.
T Consensus 69 ~----~GvAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~ 142 (294)
T cd07482 69 I----KGVAPGIGIVSYRVFGSCGS--AESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAK 142 (294)
T ss_pred C----ceeCCCCEEEEEEeecCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHH
Confidence 3 49999999999999887544 256789999999999999999999997543221 1134556667788
Q ss_pred cCCcEEEEecCCCCCCCC--------------------CCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccc
Q 000645 439 KHRLVFVSSAGNSGPALN--------------------TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTW 498 (1377)
Q Consensus 439 ~~GVivV~AAGN~G~~~~--------------------tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asf 498 (1377)
++|++||+||||+|.... .+.+|+ ..+++|+|||++ ..+..+.|
T Consensus 143 ~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~vi~Vga~~---------------~~~~~~~~ 206 (294)
T cd07482 143 SKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPA-SLPNVITVSATD---------------NNGNLSSF 206 (294)
T ss_pred HCCCEEEEeCCCCCcccccccccccccccccccccCCcceeccc-ccCceEEEEeeC---------------CCCCcCcc
Confidence 899999999999997641 356787 667999999997 56778899
Q ss_pred cCCCCCCCCCCceEEEecCCceeec--------------------cccCCccccccCCCchhhHHHHHHHHHHHHHHhhC
Q 000645 499 SSRGPTADGDLGVCISAPGGAVAPV--------------------STWTLQRRMLMNGTSMASPSACGGIALLISAMKAN 558 (1377)
Q Consensus 499 SSrGP~~dG~~KpDI~APG~~I~s~--------------------~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~ 558 (1377)
|++|+. .+|++|||+.+... .....+.|..++|||||||+|||++|||+++
T Consensus 207 S~~g~~-----~~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~---- 277 (294)
T cd07482 207 SNYGNS-----RIDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDK---- 277 (294)
T ss_pred ccCCCC-----cceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHH----
Confidence 999875 48999999987411 1123456788999999999999999999999
Q ss_pred CCCCCH-HHHHHHHHhc
Q 000645 559 AIPVSP-YTVRKAVENT 574 (1377)
Q Consensus 559 ~p~lTp-~~Ik~~L~~T 574 (1377)
+|.+++ .+|+++|++|
T Consensus 278 ~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 278 NPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCCCCcHHHHHHHHhhC
Confidence 789999 9999999876
No 32
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-34 Score=332.27 Aligned_cols=259 Identities=24% Similarity=0.195 Sum_probs=180.6
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhcc
Q 000645 284 DGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAF 363 (1377)
Q Consensus 284 ~GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~ 363 (1377)
+.||+|||||+| ++.+|++|.+.... ..+| .+.. ...|.++|||||||||+|.
T Consensus 7 G~gv~VaVlDsG---v~~~hp~l~~~~~~----------------~~~~----~~~~----~~~d~~gHGT~VAgiiag~ 59 (297)
T cd07480 7 GAGVRVAVLDTG---IDLTHPAFAGRDIT----------------TKSF----VGGE----DVQDGHGHGTHCAGTIFGR 59 (297)
T ss_pred CCCCEEEEEcCC---CCCCChhhcCCccc----------------Cccc----CCCC----CCCCCCCcHHHHHHHHhcc
Confidence 448999999999 55688888764320 0111 1111 1357789999999999998
Q ss_pred CCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCC---------CCCChHHHHHHHH
Q 000645 364 NPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPT---------LLPDYGRFIDLVN 434 (1377)
Q Consensus 364 ~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~---------~~~~~~~~~~~a~ 434 (1377)
..+ ....||||+|+|+.++++...... ....+++|++||++++++|||||||... ........++.+.
T Consensus 60 ~~~-~~~~GvAp~a~i~~~~~~~~~~~~--~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (297)
T cd07480 60 DVP-GPRYGVARGAEIALIGKVLGDGGG--GDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYR 136 (297)
T ss_pred cCC-CcccccCCCCEEEEEEEEeCCCCC--cHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHH
Confidence 765 356799999999999998764433 4456999999999999999999999854 1112233444444
Q ss_pred HHH---------------hcCCcEEEEecCCCCCCCCCCC---CCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcc
Q 000645 435 EAV---------------NKHRLVFVSSAGNSGPALNTVG---APGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY 496 (1377)
Q Consensus 435 ~~a---------------~~~GVivV~AAGN~G~~~~tvg---~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~a 496 (1377)
+.+ .++|++||+||||+|....... .|+ ..+++++|+++.. .+...
T Consensus 137 ~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~-~~~~~~~V~~V~~---------------~~~~~ 200 (297)
T cd07480 137 QRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPA-ACPSAMGVAAVGA---------------LGRTG 200 (297)
T ss_pred HHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcc-ccccccEEEEECC---------------CCCCC
Confidence 444 7889999999999986543322 233 2345556665541 12223
Q ss_pred cccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH----
Q 000645 497 TWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVE---- 572 (1377)
Q Consensus 497 sfSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~---- 572 (1377)
.|++..+. ...++||+|||.+|. ..+..+.|..++|||||||+|||++||++++ +|.+++.+++.+|+
T Consensus 201 ~~~~~~~~--~~~~~dv~ApG~~i~--s~~~~~~~~~~sGTS~AaP~VaG~aAll~~~----~p~~~~~~~~~~l~~~l~ 272 (297)
T cd07480 201 NFSAVANF--SNGEVDIAAPGVDIV--SAAPGGGYRSMSGTSMATPHVAGVAALWAEA----LPKAGGRALAALLQARLT 272 (297)
T ss_pred CccccCCC--CCCceEEEeCCCCeE--eecCCCcEEEeCcHHHHHHHHHHHHHHHHHh----CcccCHHHHHHHHHHHHh
Confidence 33333322 234699999999994 4566788999999999999999999999999 66777777666666
Q ss_pred hcCccCCCCCCCCCcccccccCHH
Q 000645 573 NTSVPIGALAEDKLSTGHGLLQVD 596 (1377)
Q Consensus 573 ~TA~~l~~~~~~~~~~G~GlIna~ 596 (1377)
+++........+...+|+|+++++
T Consensus 273 ~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 273 AARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred hcccCCCCCCCChhhcCCceeecC
Confidence 333222233345678999999874
No 33
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-34 Score=332.77 Aligned_cols=190 Identities=28% Similarity=0.313 Sum_probs=155.4
Q ss_pred ccCCCCCCcHHHHHHHHhccCCCC--------CCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEe
Q 000645 344 SIVTDSSPHGTHVAGIATAFNPEE--------PLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINM 415 (1377)
Q Consensus 344 ~~~~D~~gHGThVAGIIAg~~~n~--------~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINm 415 (1377)
..+.|..||||||||||||....+ ..+.||||+|+|+++|+++....+ ....+++||++|++++++||||
T Consensus 102 ~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~--~~~~~~~ai~~a~~~g~~Vin~ 179 (307)
T cd04852 102 RSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC--FGSDILAAIDQAIADGVDVISY 179 (307)
T ss_pred CCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc--cHHHHHHHHHHHHHcCCCEEEe
Confidence 345788999999999999986532 356899999999999999873333 5678999999999999999999
Q ss_pred CcCCCCCCCChHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCc
Q 000645 416 SYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLE 495 (1377)
Q Consensus 416 S~G~~~~~~~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~ 495 (1377)
|||.... ..+...++.+...+.++|+++|+||||+|+. ...+|+ ..+++|+|||.+
T Consensus 180 S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~--~~~~~~-~~~~vi~Vga~~-------------------- 235 (307)
T cd04852 180 SIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPG--ASTVPN-VAPWVTTVAAST-------------------- 235 (307)
T ss_pred CCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCC--CCcccC-CCCCeEEEEecc--------------------
Confidence 9998763 2233445666667789999999999999954 445676 677999999963
Q ss_pred ccccCCCCCCCCCCceEEEecCCceeecc--------ccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 000645 496 YTWSSRGPTADGDLGVCISAPGGAVAPVS--------TWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTV 567 (1377)
Q Consensus 496 asfSSrGP~~dG~~KpDI~APG~~I~s~~--------~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~I 567 (1377)
.+|||+|||.+|.+.. ....+.|..++|||||||+|||++|||+|. +|.+++.+|
T Consensus 236 -------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~----~p~~t~~~v 298 (307)
T cd04852 236 -------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSA----HPDWSPAAI 298 (307)
T ss_pred -------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHH----CCCCCHHHH
Confidence 3599999999984321 123467889999999999999999999999 889999999
Q ss_pred HHHHHhcCc
Q 000645 568 RKAVENTSV 576 (1377)
Q Consensus 568 k~~L~~TA~ 576 (1377)
|++|++||+
T Consensus 299 ~~~L~~tA~ 307 (307)
T cd04852 299 KSALMTTAY 307 (307)
T ss_pred HHHHHHhcC
Confidence 999999984
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4.9e-35 Score=334.47 Aligned_cols=270 Identities=24% Similarity=0.249 Sum_probs=191.3
Q ss_pred hhhhhHHHhhhcccccCCCCcccceE-EecCC----CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcc
Q 000645 255 DLQNRVDILRKQAESYDDKGPVVDAV-VWHDG----EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDA 329 (1377)
Q Consensus 255 dl~~~v~~l~~~~~~y~d~gp~id~~-vw~~G----gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~ 329 (1377)
++..++|.+++........+..++.. +|..| +|+||||||| ++..|++|.+.... .. .
T Consensus 4 p~~~~qw~l~~~~~~~~~~~~~~~~~~~w~~g~~G~gv~VaViDtG---v~~~h~~l~~~~~~-----~~---------~ 66 (297)
T cd04059 4 PLFPYQWYLKNTGQAGGTPGLDLNVTPAWEQGITGKGVTVAVVDDG---LEITHPDLKDNYDP-----EA---------S 66 (297)
T ss_pred cccccccccccCCCCCCCCCCCcccHHHHhCCCCCcceEEEEEeCC---cccCCHhHhhcccc-----cc---------c
Confidence 34456788887665555566667765 88764 9999999999 45578888764310 00 1
Q ss_pred cccccccccCCCccccC-CCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhC
Q 000645 330 CTFVANVYDEGNVLSIV-TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH 408 (1377)
Q Consensus 330 ~~~~~n~~d~g~~~~~~-~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~ 408 (1377)
+++ .+..+..... .+..+|||||||||+|..++..+..||||+|+|+.+++++... .......++.++.+
T Consensus 67 ~~~----~~~~~~~~~~~~~~~gHGT~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~~- 137 (297)
T cd04059 67 YDF----NDNDPDPTPRYDDDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGDV----TDVVEAESLGLNPD- 137 (297)
T ss_pred ccc----cCCCCCCCCccccccccCcceeeEEEeecCCCcccccccccceEeEEEecCCcc----ccHHHHHHHhcccC-
Confidence 111 1111111111 3778999999999999987766889999999999999988641 22344455555444
Q ss_pred CCcEEEeCcCCCCCCC---ChHHHHHHHHHHH----h-cCCcEEEEecCCCCCCCCCCC--CCCCCCCCeEEEeeeeCcc
Q 000645 409 KCDLINMSYGEPTLLP---DYGRFIDLVNEAV----N-KHRLVFVSSAGNSGPALNTVG--APGGTSSSIIAVGAYVSPA 478 (1377)
Q Consensus 409 gadVINmS~G~~~~~~---~~~~~~~~a~~~a----~-~~GVivV~AAGN~G~~~~tvg--~Pa~~s~~VIsVGA~~sp~ 478 (1377)
.++|||||||...... ........+.+.+ . .+|++||+||||+|....... .|+ ..+++|+|||++
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~-~~~~vi~Vga~~--- 213 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYN-NSIYTISVSAVT--- 213 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCccc-CCCceEEEEeeC---
Confidence 5699999999765432 1112222222222 2 269999999999998543333 233 568999999997
Q ss_pred cccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCc-------eeeccccC-CccccccCCCchhhHHHHHHHHH
Q 000645 479 MAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGA-------VAPVSTWT-LQRRMLMNGTSMASPSACGGIAL 550 (1377)
Q Consensus 479 ~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~-------I~s~~~~~-~~~y~~~sGTSmAAP~VAG~aAL 550 (1377)
..+..+.||++|+. ++++|||+. |.+..... .+.+..++|||||||+|||++||
T Consensus 214 ------------~~g~~~~~s~~g~~------~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~aAl 275 (297)
T cd04059 214 ------------ANGVRASYSEVGSS------VLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIAL 275 (297)
T ss_pred ------------CCCCCcCCCCCCCc------EEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchhhhhhHhHHHH
Confidence 56788999999997 899999987 43221111 35678899999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 551 LISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 551 Lls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
|+|+ +|.+++.+||++|++||+
T Consensus 276 l~~~----~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 276 MLEA----NPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhcc----CCCCCHHHHHHHHHHhcC
Confidence 9998 889999999999999985
No 35
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-33 Score=323.36 Aligned_cols=197 Identities=25% Similarity=0.285 Sum_probs=152.9
Q ss_pred CCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCC-
Q 000645 346 VTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLP- 424 (1377)
Q Consensus 346 ~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~- 424 (1377)
..|+.||||||||++ .||||+|+|+.+|+++. ....+++|++||++++++|||||||.....+
T Consensus 57 ~~D~~gHGT~vag~i----------~GvAP~a~i~~vkv~~~------~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~ 120 (298)
T cd07494 57 ACDENGHGTGESANL----------FAIAPGAQFIGVKLGGP------DLVNSVGAFKKAISLSPDIISNSWGYDLRSPG 120 (298)
T ss_pred CCCCCCcchheeece----------eEeCCCCeEEEEEccCC------CcHHHHHHHHHHHhcCCCEEEeecccCCCCcc
Confidence 357889999999865 68999999999999875 3467899999999999999999999864322
Q ss_pred --------ChHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCC-c
Q 000645 425 --------DYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGL-E 495 (1377)
Q Consensus 425 --------~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~-~ 495 (1377)
.+...++.+++.+.++|++||+||||++. .+|+ ..+++|+|||++.. ..+. .
T Consensus 121 ~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~-----~~Pa-~~p~viaVga~~~~-------------~~g~~~ 181 (298)
T cd07494 121 TSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW-----SFPA-QHPEVIAAGGVFVD-------------EDGARR 181 (298)
T ss_pred cccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC-----CcCC-CCCCEEEEEeEecc-------------CCCccc
Confidence 12345677778888999999999999974 5798 67899999998510 1121 1
Q ss_pred ccccC--CC-CCCCCCCceEEE----------------ecCCceeec------cccCCccccccCCCchhhHHHHHHHHH
Q 000645 496 YTWSS--RG-PTADGDLGVCIS----------------APGGAVAPV------STWTLQRRMLMNGTSMASPSACGGIAL 550 (1377)
Q Consensus 496 asfSS--rG-P~~dG~~KpDI~----------------APG~~I~s~------~~~~~~~y~~~sGTSmAAP~VAG~aAL 550 (1377)
..+++ ++ +..+|+.+||++ |||..|... .+...++|..++|||||||||||++||
T Consensus 182 ~~~~~~~~~s~~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG~aAl 261 (298)
T cd07494 182 ASSYASGFRSKIYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCAL 261 (298)
T ss_pred ccccccCcccccCCCCccCccccccCcCCcccccccccCCCcceeccccCCCCCCCCCCCeEeeccchHHHHHHHHHHHH
Confidence 11111 21 234567778874 699888321 234456799999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhcCccCCCC
Q 000645 551 LISAMKANAIPVSPYTVRKAVENTSVPIGAL 581 (1377)
Q Consensus 551 Lls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~ 581 (1377)
|++. +|.+++.+||++|..||+++...
T Consensus 262 l~~~----~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 262 MLQA----NPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred HHHh----CCCCCHHHHHHHHHHhCcccCCC
Confidence 9998 88999999999999999987653
No 36
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-33 Score=304.44 Aligned_cols=222 Identities=24% Similarity=0.273 Sum_probs=169.4
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
||+||||||| ++++|++|.+.......... .+... ......|..||||||||||++.
T Consensus 1 gV~VaViDsG---i~~~h~~l~~~~~~~~~~~~---------------~~~~~---~~~~~~d~~gHGT~vAgiia~~-- 57 (222)
T cd07492 1 GVRVAVIDSG---VDTDHPDLGNLALDGEVTID---------------LEIIV---VSAEGGDKDGHGTACAGIIKKY-- 57 (222)
T ss_pred CCEEEEEeCC---CCCCChhhhccccccccccc---------------ccccc---CCCCCCCCCCcHHHHHHHHHcc--
Confidence 6899999999 55578888765421110000 00000 1123357789999999999874
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHHHhcCCcEEE
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFV 445 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~a~~~GVivV 445 (1377)
+|+++|+.+|+++....+ +...+++|++|+++++++|||||||..... ....+..+++.+.++|+++|
T Consensus 58 --------~p~~~i~~~~v~~~~~~~--~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~--~~~~~~~~~~~a~~~g~l~V 125 (222)
T cd07492 58 --------APEAEIGSIKILGEDGRC--NSFVLEKALRACVENDIRIVNLSLGGPGDR--DFPLLKELLEYAYKAGGIIV 125 (222)
T ss_pred --------CCCCeEEEEEEeCCCCCc--CHHHHHHHHHHHHHCCCCEEEeCCCCCCCC--cCHHHHHHHHHHHHCCCEEE
Confidence 599999999999876533 567899999999999999999999986542 22345667777778899999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccc
Q 000645 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525 (1377)
Q Consensus 446 ~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~ 525 (1377)
+||||++... .+|+ ..+++|+||+.+ ..+..+.| ++ .++++|||.+|. ..
T Consensus 126 ~aagN~~~~~---~~Pa-~~~~vi~V~~~~---------------~~~~~~~~---~~------~~~~~apg~~i~--~~ 175 (222)
T cd07492 126 AAAPNNNDIG---TPPA-SFPNVIGVKSDT---------------ADDPKSFW---YI------YVEFSADGVDII--AP 175 (222)
T ss_pred EECCCCCCCC---CCCc-cCCceEEEEecC---------------CCCCcccc---cC------CceEEeCCCCeE--ee
Confidence 9999998642 3477 567999999976 22322222 33 389999999994 44
Q ss_pred cCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 526 ~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
+..+.|..++|||||||+|||++|||+++ +|.+++.+|+++|+.||+
T Consensus 176 ~~~~~~~~~~GTS~Aap~vaG~~All~~~----~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 176 APHGRYLTVSGNSFAAPHVTGMVALLLSE----KPDIDANDLKRLLQRLAV 222 (222)
T ss_pred cCCCCEEEeccHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhcC
Confidence 55678899999999999999999999999 789999999999999985
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=8.5e-33 Score=308.71 Aligned_cols=245 Identities=24% Similarity=0.264 Sum_probs=187.2
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccC
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFN 364 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~ 364 (1377)
.||+|||||+| ++++|++|.+......+... .. + .......|..+|||||||||+|..
T Consensus 3 ~gv~VaiiDsG---~~~~h~~l~~~~~~~~~~~~----------------~~-~--~~~~~~~~~~~HGT~vagiiag~~ 60 (267)
T cd04848 3 AGVKVGVIDSG---IDLSHPEFAGRVSEASYYVA----------------VN-D--AGYASNGDGDSHGTHVAGVIAAAR 60 (267)
T ss_pred CceEEEEEeCC---CCCCCccccCcccccccccc----------------cc-c--ccCCCCCCCCChHHHHHHHHhcCc
Confidence 48999999999 55588888765421111000 00 0 001123567899999999999997
Q ss_pred CCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCC-----------ChHHHHHHH
Q 000645 365 PEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLP-----------DYGRFIDLV 433 (1377)
Q Consensus 365 ~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~-----------~~~~~~~~a 433 (1377)
++ .+..||||+|+|+.+|+++... .......+.+++.++++.+++|||||||...... ........+
T Consensus 61 ~~-~~~~GiAp~a~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (267)
T cd04848 61 DG-GGMHGVAPDATLYSARASASAG-STFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAA 138 (267)
T ss_pred CC-CCcccCCcCCEEEEEeccCCCC-cccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHH
Confidence 66 6889999999999999988643 1124567889999999999999999999876432 134556777
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCC-------CCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccc--cCCCCC
Q 000645 434 NEAVNKHRLVFVSSAGNSGPALNTV-------GAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTW--SSRGPT 504 (1377)
Q Consensus 434 ~~~a~~~GVivV~AAGN~G~~~~tv-------g~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asf--SSrGP~ 504 (1377)
++.+.++|++||+||||++...... .+|+ ..+++|+||+++ ..+....| |++|+.
T Consensus 139 ~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~-~~~~vi~Vga~~---------------~~~~~~~~~~s~~~~~ 202 (267)
T cd04848 139 LARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPE-LEGGWIAVVAVD---------------PNGTIASYSYSNRCGV 202 (267)
T ss_pred HHHHhhCCeEEEEeCCCCCCCCCccccccccccCcc-ccCCEEEEEEec---------------CCCCcccccccccchh
Confidence 7888899999999999998764433 2344 457999999998 44566666 998875
Q ss_pred CCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCc
Q 000645 505 ADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 505 ~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~ 576 (1377)
.+ .++++|||.+|.+........|..++|||||||+|||++||++++ +|.+++.+|+.+|++||+
T Consensus 203 ~~---~~~~~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~----~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 203 AA---NWCLAAPGENIYSTDPDGGNGYGRVSGTSFAAPHVSGAAALLAQK----FPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hh---hheeecCcCceeecccCCCCcccccceeEchHHHHHHHHHHHHHH----CCCCCHHHHHHHHHhhcC
Confidence 32 467999999885443333567899999999999999999999999 789999999999999984
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-32 Score=311.65 Aligned_cols=229 Identities=26% Similarity=0.302 Sum_probs=183.3
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccc-cCCCccccCCCCCCcHHHHHHHHhc
Q 000645 284 DGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVY-DEGNVLSIVTDSSPHGTHVAGIATA 362 (1377)
Q Consensus 284 ~GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~-d~g~~~~~~~D~~gHGThVAGIIAg 362 (1377)
.++|+..|+|||| +.+|+||.+... || .++. .++ ..|++||||||||+|++
T Consensus 218 G~gvtaYv~DTGV---ni~H~dFegRa~---------wG-----------a~i~~~~~-----~~D~nGHGTH~AG~I~s 269 (501)
T KOG1153|consen 218 GKGVTAYVLDTGV---NIEHPDFEGRAI---------WG-----------ATIPPKDG-----DEDCNGHGTHVAGLIGS 269 (501)
T ss_pred CCCeEEEEecccc---ccccccccccee---------cc-----------cccCCCCc-----ccccCCCcceeeeeeec
Confidence 4599999999995 557888876431 22 1111 111 25889999999999999
Q ss_pred cCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhC---------CCcEEEeCcCCCCCCCChHHHHHHH
Q 000645 363 FNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH---------KCDLINMSYGEPTLLPDYGRFIDLV 433 (1377)
Q Consensus 363 ~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~---------gadVINmS~G~~~~~~~~~~~~~~a 433 (1377)
.+ .|||.+++|+++||+++.+.+ +.++++.++++++++ +..|.|||+|+..+ ..++.+
T Consensus 270 Kt------~GvAK~s~lvaVKVl~~dGsG--t~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S-----~aLn~A 336 (501)
T KOG1153|consen 270 KT------FGVAKNSNLVAVKVLRSDGSG--TVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS-----AALNMA 336 (501)
T ss_pred cc------cccccccceEEEEEeccCCcE--eHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc-----HHHHHH
Confidence 86 899999999999999987655 678999999999885 56799999999644 678999
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEE
Q 000645 434 NEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCI 513 (1377)
Q Consensus 434 ~~~a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI 513 (1377)
++.|...|++|++||||+..+.+. .+|| .++++|+|||.+ ..+.++.|||||+| +||
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~-~SPa-ss~~aITVGAst---------------~~D~iA~FSN~G~C------Vdi 393 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACN-SSPA-SSKKAITVGAST---------------KNDTIAFFSNWGKC------VDI 393 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhc-cCcc-cccccEEecccc---------------cccchhhhcCccce------eee
Confidence 999999999999999999877543 5788 678999999997 56789999999999 999
Q ss_pred EecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHhcCc
Q 000645 514 SAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKAN-----AIPVSPYTVRKAVENTSV 576 (1377)
Q Consensus 514 ~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~-----~p~lTp~~Ik~~L~~TA~ 576 (1377)
.|||.+|.+....+.+.....+|||||+|||||++|..++..+.. +-..++.+++..++.-..
T Consensus 394 FAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 394 FAPGVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ecCchhhhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999954333344467889999999999999999999984310 113477788777765543
No 39
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=309.60 Aligned_cols=270 Identities=26% Similarity=0.393 Sum_probs=221.4
Q ss_pred EecCC----CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHH
Q 000645 281 VWHDG----EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHV 356 (1377)
Q Consensus 281 vw~~G----gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThV 356 (1377)
.|..| +|+|||.|||+.. +||.|.+....+|+..+. ...|.-||||.|
T Consensus 193 LWk~GyTGa~VkvAiFDTGl~~---~HPHFrnvKERTNWTNE~-------------------------tLdD~lgHGTFV 244 (1033)
T KOG4266|consen 193 LWKKGYTGAKVKVAIFDTGLRA---DHPHFRNVKERTNWTNED-------------------------TLDDNLGHGTFV 244 (1033)
T ss_pred HHhccccCCceEEEEeeccccc---CCccccchhhhcCCcCcc-------------------------ccccCcccceeE
Confidence 56655 8999999999544 677777655333332221 123668999999
Q ss_pred HHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCCChHHHHHHHHHH
Q 000645 357 AGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEA 436 (1377)
Q Consensus 357 AGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~~~~~~~~~a~~~ 436 (1377)
||+||+.. ...|.||+++|++.|++....-+ ..+.+++|+.||+...+||+|+|+|++.... ..+.+.+-+.
T Consensus 245 AGvia~~~----ec~gfa~d~e~~~frvft~~qVS--YTSWFLDAFNYAI~~kidvLNLSIGGPDfmD--~PFVeKVwEl 316 (1033)
T KOG4266|consen 245 AGVIAGRN----ECLGFASDTEIYAFRVFTDAQVS--YTSWFLDAFNYAIATKIDVLNLSIGGPDFMD--LPFVEKVWEL 316 (1033)
T ss_pred eeeeccch----hhcccCCccceeEEEeeccceee--hhhHHHHHHHHHHhhhcceEeeccCCccccc--chHHHHHHhh
Confidence 99999985 45899999999999999876554 5678999999999999999999999986532 2466666665
Q ss_pred HhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCC------CCCCc
Q 000645 437 VNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTA------DGDLG 510 (1377)
Q Consensus 437 a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~------dG~~K 510 (1377)
...+||+|.|+||+|+-.+|...||. ...||+||.++ .++.++.|||||-+. .|+.|
T Consensus 317 -tAnNvIMvSAiGNDGPLYGTLNNPaD-QsDViGVGGId---------------fdD~IA~FSSRGMtTWELP~GYGRmk 379 (1033)
T KOG4266|consen 317 -TANNVIMVSAIGNDGPLYGTLNNPAD-QSDVIGVGGID---------------FDDHIASFSSRGMTTWELPHGYGRMK 379 (1033)
T ss_pred -ccCcEEEEEecCCCCcceeecCCccc-ccceeeecccc---------------ccchhhhhccCCcceeecCCcccccC
Confidence 56899999999999999999999994 55999999998 578899999999653 69999
Q ss_pred eEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCCCCCCCcccc
Q 000645 511 VCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKLSTGH 590 (1377)
Q Consensus 511 pDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~ 590 (1377)
|||++.|..|. ...-..+....+|||.|+|.|||+++||.|.--++.--++|+.+|++|+.+|.++++. .-+.||+
T Consensus 380 pDiVtYG~~v~--GS~v~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~--NMfEQGa 455 (1033)
T KOG4266|consen 380 PDIVTYGRDVM--GSKVSTGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP--NMFEQGA 455 (1033)
T ss_pred CceEeeccccc--cCcccccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC--chhhccC
Confidence 99999999983 3333345677899999999999999999995333344589999999999999999887 5789999
Q ss_pred cccCHHHHHHHHHhcCC
Q 000645 591 GLLQVDKAYEYVQQYGN 607 (1377)
Q Consensus 591 GlIna~kAv~~l~~~~~ 607 (1377)
|.+|+.++++.+..+..
T Consensus 456 GkldLL~syqiL~SYkP 472 (1033)
T KOG4266|consen 456 GKLDLLESYQILKSYKP 472 (1033)
T ss_pred cchhHHHHHHHHHhcCC
Confidence 99999999999998864
No 40
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=2.9e-30 Score=289.08 Aligned_cols=196 Identities=24% Similarity=0.274 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHH--HhCCCcEEEeCcCCCCCC
Q 000645 346 VTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAA--VEHKCDLINMSYGEPTLL 423 (1377)
Q Consensus 346 ~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~A--i~~gadVINmS~G~~~~~ 423 (1377)
..|.++|||||||||||. .|++|+++++..++... ....+.+++.|+ .+.+++|||||||.....
T Consensus 33 ~~~~~~HGThVAgiiag~-------~~~~p~a~~~~~~~~~~------~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~ 99 (247)
T cd07488 33 NNTFDDHATLVASIMGGR-------DGGLPAVNLYSSAFGIK------SNNGQWQECLEAQQNGNNVKIINHSYGEGLKR 99 (247)
T ss_pred CCCCCCHHHHHHHHHHhc-------cCCCCccceehhhhCCC------CCCccHHHHHHHHHhcCCceEEEeCCccCCCC
Confidence 357899999999999997 35679999987666432 223466788888 678999999999987554
Q ss_pred C------ChHHHHHHHHHHHhcCCcEEEEecCCCCCCC---CCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCC
Q 000645 424 P------DYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL---NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGL 494 (1377)
Q Consensus 424 ~------~~~~~~~~a~~~a~~~GVivV~AAGN~G~~~---~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~ 494 (1377)
. .+......+...+.++|+++|+||||+|... ..+..|+ ..+++|+|||++ ..+.
T Consensus 100 ~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa-~~~nvItVGA~d---------------~~g~ 163 (247)
T cd07488 100 DPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPT-LAYNSIVVGSTD---------------RNGD 163 (247)
T ss_pred CccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCcc-ccCCeEEEEEec---------------CCCC
Confidence 3 2333333344444555999999999999854 3456777 667999999998 3343
Q ss_pred cc---cccC--CCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhC--CCCCCHHHH
Q 000645 495 EY---TWSS--RGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKAN--AIPVSPYTV 567 (1377)
Q Consensus 495 ~a---sfSS--rGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~--~p~lTp~~I 567 (1377)
.+ .||+ ++|..+++.+|||+|||.+|.+ ..+.|..++|||||||+|||++|||++.++.. ++..+--++
T Consensus 164 ~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s----~~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~ 239 (247)
T cd07488 164 RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL----PDGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIAL 239 (247)
T ss_pred cceecccccccCCCCCCCCceeEEEEeeeeEEC----CCCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHH
Confidence 33 4455 4566778899999999999965 45678899999999999999999999997753 455666677
Q ss_pred HHHHHhc
Q 000645 568 RKAVENT 574 (1377)
Q Consensus 568 k~~L~~T 574 (1377)
+.++..+
T Consensus 240 ~~~~~~~ 246 (247)
T cd07488 240 RALVSSS 246 (247)
T ss_pred HHHHhcc
Confidence 7777665
No 41
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.96 E-value=2.9e-28 Score=265.12 Aligned_cols=198 Identities=34% Similarity=0.435 Sum_probs=158.7
Q ss_pred CCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHH-hCCCcEEEeCcCCCCCCC
Q 000645 346 VTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV-EHKCDLINMSYGEPTLLP 424 (1377)
Q Consensus 346 ~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai-~~gadVINmS~G~~~~~~ 424 (1377)
..+..+|||||||+|++...+. ...|+||+|+|+.+++...... .....+++++++++ .++++|||||||.....
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~-~~~g~a~~a~i~~~~~~~~~~~--~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~- 115 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNG-GGVGVAPGAKLIPVKVLDGDGS--GSSSDIAAAIDYAAADQGADVINLSLGGPGSP- 115 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCC-CCEEeCCCCEEEEEEEecCCCC--cCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-
Confidence 3577899999999999987655 3389999999999999887542 25678999999999 89999999999987553
Q ss_pred ChHHHHHHHHHHHhcC-CcEEEEecCCCCCCCCC-CCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcc-cccCC
Q 000645 425 DYGRFIDLVNEAVNKH-RLVFVSSAGNSGPALNT-VGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY-TWSSR 501 (1377)
Q Consensus 425 ~~~~~~~~a~~~a~~~-GVivV~AAGN~G~~~~t-vg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~a-sfSSr 501 (1377)
.......+++.+..+ |+++|+||||++..... ...|+ ..+++|+||+++ ..+... .++++
T Consensus 116 -~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~-~~~~vi~Vga~~---------------~~~~~~~~~~~~ 178 (241)
T cd00306 116 -PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPA-ASPNVIAVGAVD---------------RDGTPASPSSNG 178 (241)
T ss_pred -CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCc-cCCceEEEEecC---------------cCCCccCCcCCC
Confidence 122344444444455 99999999999976432 35676 678999999997 345555 67777
Q ss_pred CCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 000645 502 GPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574 (1377)
Q Consensus 502 GP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~T 574 (1377)
|+. +++.|||..+..........+..++|||||||+|||++||+++. +|.+++.+++.+|+.+
T Consensus 179 ~~~------~~~~apg~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~----~~~~~~~~~~~~l~~t 241 (241)
T cd00306 179 GAG------VDIAAPGGDILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSA----NPDLTPAQVKAALLST 241 (241)
T ss_pred CCC------ceEEeCcCCccCcccCCCCCeEeeccHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHhhC
Confidence 765 99999999985432445667899999999999999999999999 7789999999999865
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-23 Score=229.91 Aligned_cols=318 Identities=21% Similarity=0.212 Sum_probs=213.1
Q ss_pred hhhhhhHHHhhhcccccCCCCcccceE-EecCC----CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCc
Q 000645 254 EDLQNRVDILRKQAESYDDKGPVVDAV-VWHDG----EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLD 328 (1377)
Q Consensus 254 edl~~~v~~l~~~~~~y~d~gp~id~~-vw~~G----gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d 328 (1377)
+.+...+|+|.+.++.-..++..+++. +|..| +|++||+|.| +|+.||||.. +|..+..|. |+..|
T Consensus 125 dplf~~qwylkntgqaggk~rldlnv~~awa~g~tgknvttaimddg---vdymhpdlk~-----nynaeasyd-fssnd 195 (629)
T KOG3526|consen 125 DPLFTKQWYLKNTGQAGGKPRLDLNVAEAWALGYTGKNVTTAIMDDG---VDYMHPDLKS-----NYNAEASYD-FSSND 195 (629)
T ss_pred CcccceeeeeecccccCCcccccccHHHHHhhcccCCCceEEeecCC---chhcCcchhc-----ccCceeecc-cccCC
Confidence 556677888888777666666556654 88876 9999999999 7889999985 677666653 22222
Q ss_pred ccccccccccCCCccccCCCCCCcHHHHHHHHhccCCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHh-
Q 000645 329 ACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE- 407 (1377)
Q Consensus 329 ~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~- 407 (1377)
.+.|-- +.| .--++|||.|||-+++..+|+.+..|||++.++..+|+++.. ...++++|-...-+
T Consensus 196 pfpypr-ytd--------dwfnshgtrcagev~aardngicgvgvaydskvagirmldqp-----ymtdlieansmghep 261 (629)
T KOG3526|consen 196 PFPYPR-YTD--------DWFNSHGTRCAGEVVAARDNGICGVGVAYDSKVAGIRMLDQP-----YMTDLIEANSMGHEP 261 (629)
T ss_pred CCCCCc-ccc--------hhhhccCccccceeeeeccCCceeeeeeeccccceeeecCCc-----hhhhhhhhcccCCCC
Confidence 222210 001 123789999999998888888899999999999999999862 33455554332222
Q ss_pred CCCcEEEeCcCCCCCCCCh----HHHHHHHHHHH----hcCCcEEEEecCCCCCCCCCCCCCCC-CCCCeEEEeeeeCcc
Q 000645 408 HKCDLINMSYGEPTLLPDY----GRFIDLVNEAV----NKHRLVFVSSAGNSGPALNTVGAPGG-TSSSIIAVGAYVSPA 478 (1377)
Q Consensus 408 ~gadVINmS~G~~~~~~~~----~~~~~~a~~~a----~~~GVivV~AAGN~G~~~~tvg~Pa~-~s~~VIsVGA~~sp~ 478 (1377)
..++|.+.|||........ +..++.+.+-+ ...|.|+|+|+|..|... .+.|.|. .+...|++.+..+.
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~d-dcncdgyaasmwtisinsaind- 339 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDD-DCNCDGYAASMWTISINSAIND- 339 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCcc-ccCCccchhheEEEEeehhhcC-
Confidence 4689999999986543221 22334444433 346899999999999652 3444442 34567777654321
Q ss_pred cccCccccc-cCCCCCCcccccCCCCCCCCCCceEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhh
Q 000645 479 MAAGAHCVV-EPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKA 557 (1377)
Q Consensus 479 ~~~~~~~v~-~~~~~g~~asfSSrGP~~dG~~KpDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~ 557 (1377)
+..... +....-..++|||-|-. | -..+++ ....+.++...+|||.|||-+||+.||.+++
T Consensus 340 ---g~nahydescsstlastfsng~rn------p-----etgvat-tdlyg~ct~~hsgtsaaapeaagvfalalea--- 401 (629)
T KOG3526|consen 340 ---GENAHYDESCSSTLASTFSNGGRN------P-----ETGVAT-TDLYGRCTRSHSGTSAAAPEAAGVFALALEA--- 401 (629)
T ss_pred ---CccccccchhhHHHHHHhhcCCcC------C-----Ccceee-eccccceecccCCccccCccccceeeeeecc---
Confidence 111111 11122234567775543 2 223322 2334456788999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhcCccCC-------------CCC-CCCCcccccccCHHHHHHHHHhcCCCCceeEEEE
Q 000645 558 NAIPVSPYTVRKAVENTSVPIG-------------ALA-EDKLSTGHGLLQVDKAYEYVQQYGNVPCVSYQIK 616 (1377)
Q Consensus 558 ~~p~lTp~~Ik~~L~~TA~~l~-------------~~~-~~~~~~G~GlIna~kAv~~l~~~~~~p~~~~~vs 616 (1377)
||.+++.+++.+-.-|+.... +.+ ..+.-+|||.+|+.+.+.++..+..+|. .|.+.
T Consensus 402 -np~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvpp-ryhc~ 472 (629)
T KOG3526|consen 402 -NPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPP-RYHCT 472 (629)
T ss_pred -CCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCC-ceeec
Confidence 999999999998777765432 111 3467799999999999999999999884 44444
No 43
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-20 Score=226.24 Aligned_cols=266 Identities=29% Similarity=0.349 Sum_probs=194.1
Q ss_pred CCeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhcc-
Q 000645 285 GEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAF- 363 (1377)
Q Consensus 285 GgV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~- 363 (1377)
.+|.++|||+| ++..|+++.+..... .++.+..+. ....|..+|||||+|++++.
T Consensus 142 ~gv~~~vid~g---v~~~~~~~~~~~~~~--------------------~~~~~~~~~-~~~~d~~~hGt~vag~ia~~~ 197 (508)
T COG1404 142 KGVTVAVIDTG---VDASHPDLAGSAVAG--------------------GDFVDGDPE-PPFLDDNGHGTHVAGTIAAVI 197 (508)
T ss_pred CCeEEEEeccC---CCCCChhhhcccccc--------------------cccccCCCC-CCCCCCCCCcceeeeeeeeec
Confidence 39999999999 555777887644211 111111110 02357889999999999995
Q ss_pred CCCCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCC--CcEEEeCcCCCCCCCChHHHHHHHHHHHhcCC
Q 000645 364 NPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHK--CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHR 441 (1377)
Q Consensus 364 ~~n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~g--adVINmS~G~~~~~~~~~~~~~~a~~~a~~~G 441 (1377)
..+.....|++|+++++.+++++...+. ....++++++.++++.+ +++||||+|.. ...........+...+...|
T Consensus 198 ~~~~~~~~g~a~~~~~~~~~~~~~~~g~-~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g 275 (508)
T COG1404 198 FDNGAGVAGVAPGAKLLLVKVLGSGGGS-GELSDVAEGIEGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAG 275 (508)
T ss_pred ccCCCccccccCCCcEEEEEeccCCCCc-ccHHHHHHHHHHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcC
Confidence 2444578999999999999998865332 35567799999999998 99999999986 22223344556666665556
Q ss_pred -cEEEEecCCCCCCCC--CCCCCCCCC-CCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEecC
Q 000645 442 -LVFVSSAGNSGPALN--TVGAPGGTS-SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG 517 (1377)
Q Consensus 442 -VivV~AAGN~G~~~~--tvg~Pa~~s-~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~APG 517 (1377)
+++|+++||.|.+.. ...+|+... ..+++||+++ .......||++|+. ..++++|||
T Consensus 276 ~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~---------------~~~~~~~~s~~g~~----~~~~~~apg 336 (508)
T COG1404 276 GVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD---------------LSDTVASFSNDGSP----TGVDIAAPG 336 (508)
T ss_pred CEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------------CCCccccccccCCC----CCcceeCCC
Confidence 999999999997753 456777422 3899999987 34678899999974 238999999
Q ss_pred Cceee---ccccCCcc--ccccCCCchhhHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHhcCccCCCCCCCCCccccc
Q 000645 518 GAVAP---VSTWTLQR--RMLMNGTSMASPSACGGIALLISAMKANAI-PVSPYTVRKAVENTSVPIGALAEDKLSTGHG 591 (1377)
Q Consensus 518 ~~I~s---~~~~~~~~--y~~~sGTSmAAP~VAG~aALLls~~~~~~p-~lTp~~Ik~~L~~TA~~l~~~~~~~~~~G~G 591 (1377)
.++.. ...+.+.. +..++||||++|+++|++||+++. ++ .+++.+++..+..++.. .........++.|
T Consensus 337 ~~i~~~~~~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 411 (508)
T COG1404 337 VNILSLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSA----NPNELTPAQVRNLIVTTAGL-TPLSGVDNLVGGG 411 (508)
T ss_pred ccccccccceeeeCCccceEeeccccccccHHHHHHHHHHcc----CcccCCHHHHHHHHhhcccc-ccCCccccccccC
Confidence 99854 12444444 899999999999999999999998 77 79999999998888874 1111234567777
Q ss_pred ccCHHHHHH
Q 000645 592 LLQVDKAYE 600 (1377)
Q Consensus 592 lIna~kAv~ 600 (1377)
..+...+..
T Consensus 412 ~~~~~~~~~ 420 (508)
T COG1404 412 LANLDAAAT 420 (508)
T ss_pred ccccccccc
Confidence 666555443
No 44
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.68 E-value=7.6e-16 Score=182.14 Aligned_cols=179 Identities=26% Similarity=0.242 Sum_probs=127.7
Q ss_pred CcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhC---CCcEEEeCcCCCCCCC--ChHHHHHHHHHHHhcCCcE
Q 000645 369 LLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH---KCDLINMSYGEPTLLP--DYGRFIDLVNEAVNKHRLV 443 (1377)
Q Consensus 369 g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~---gadVINmS~G~~~~~~--~~~~~~~~a~~~a~~~GVi 443 (1377)
...||||+|+|+.+++.+.. ...++.++.+++++ +++|||||||...... .+...++.+.+.+..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCcC------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 35899999999999998753 34678889999887 9999999999875532 2445677788888889999
Q ss_pred EEEecCCCCCCCC---------CCCCCCCCCCCeEEEeeeeCcccccCcccc-----ccCCCCCCcccccC---------
Q 000645 444 FVSSAGNSGPALN---------TVGAPGGTSSSIIAVGAYVSPAMAAGAHCV-----VEPPSEGLEYTWSS--------- 500 (1377)
Q Consensus 444 vV~AAGN~G~~~~---------tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v-----~~~~~~g~~asfSS--------- 500 (1377)
||+||||+|.... ++.+|+ .+++|++||++.........+.. ......+.--.||+
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pa-s~P~V~sVGgt~~~~~~~~~~~~~~~~~~~~~~~~SGGG~S~~f~~P~yQ~ 234 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPA-SSPYVTAVGGTTLYTGGTGSSAESTVWSSEGGWGGSGGGFSNYFPRPSYQS 234 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCC-CCCceeeeecccccCCCcccccccccccccCCcccccCCcCCCCCCChhhh
Confidence 9999999997753 456899 78899999998754332221110 00000000011222
Q ss_pred ---------CCCCCCCCCceEEEecC---CceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHhh
Q 000645 501 ---------RGPTADGDLGVCISAPG---GAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKA 557 (1377)
Q Consensus 501 ---------rGP~~dG~~KpDI~APG---~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~~ 557 (1377)
......+|..|||+|.+ ..... ...+.+..+.|||+|||++||++|||.|....
T Consensus 235 ~~~~~~~~~~~~~~~gR~~PDVaa~a~~~~g~~i---~~~g~~~~~gGTS~aaP~~Ag~~Al~n~~~~~ 300 (361)
T cd04056 235 GAVLGLPPSGLYNGSGRGVPDVAANADPGTGYLV---VVNGQWYLVGGTSAAAPLFAGLIALINQARLA 300 (361)
T ss_pred hcccCCCCCCCCCCCCCcCCeeecccCCCCCEEE---EECCeEEeeCCccHHHHHHHHHHHHHHHHhhh
Confidence 23344689999999984 44321 22367788999999999999999999999663
No 45
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=99.36 E-value=5e-13 Score=132.84 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhccCcCChhhhhhHHHHHHHHHHhCCCChHHHHHHHHhhhccC
Q 000645 1123 GTKTVSERLEEEVRDAKMKVLGSLKQETDEECSDWKKLAASLKSEYPKYTPLLAKILEGLLSRS 1186 (1377)
Q Consensus 1123 ~~k~~~~~~~e~~rd~~i~~l~kl~~~~~~~~~~~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~ 1186 (1377)
++|++.|||.|+|||+||+||.||+.| ..+.||++|++.||+|||+|+++|+.||+.+
T Consensus 67 k~ktk~DeY~EaLRDfq~~~iaKle~e------~Ae~vY~el~~~~P~HLpaHla~i~~lDS~~ 124 (139)
T PF12583_consen 67 KDKTKWDEYSEALRDFQCSWIAKLEPE------NAEQVYEELLEAHPDHLPAHLAMIQNLDSPE 124 (139)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS-HH------HHHHHHHHHHHH-TT-THHHHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCHH------HHHHHHHHHHHHCcchHHHHHHHHHccCcHH
Confidence 788999999999999999999999864 3579999999999999999999999999964
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8.5e-08 Score=115.92 Aligned_cols=280 Identities=22% Similarity=0.168 Sum_probs=170.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCcCCCCCCCCccccccccccccCcccccccccccCCCccccCCCCCCcHHHHHHHHhccCC
Q 000645 286 EVWRVALDTQSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNP 365 (1377)
Q Consensus 286 gV~VAVIDTGI~~~d~~h~dL~~~~~~~~y~~~~~~g~~~~~d~~~~~~n~~d~g~~~~~~~D~~gHGThVAGIIAg~~~ 365 (1377)
++.|+|+|+|+ +..|+++.+. |.....|..+. +..+ ...-.+......|||-||+-+++..+
T Consensus 34 ~~~~~i~ddgl---~~~h~~~~~~-----~~~~~s~d~~~---------~~~~-p~~~~~~~~~~~~g~~Ca~~~a~~~~ 95 (431)
T KOG3525|consen 34 RVSVTILDDGL---ECSHPDLRNN-----YDPLGSYDVNR---------HDND-PEPRCDGTNENKHGTRCAGCVAARAN 95 (431)
T ss_pred ceEEEEeeccc---cccCcccccc-----cCcceeEeeec---------CCCC-cccccCCCCccccCCCCCcccccccC
Confidence 89999999994 4467777653 33333322211 1100 01111223458999999999999987
Q ss_pred CCCCcccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHH-hCCCcEEEeCcCCCCCCC---ChHHHHHH-----HHHH
Q 000645 366 EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV-EHKCDLINMSYGEPTLLP---DYGRFIDL-----VNEA 436 (1377)
Q Consensus 366 n~~g~~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai-~~gadVINmS~G~~~~~~---~~~~~~~~-----a~~~ 436 (1377)
+.....|+++++++..+++++.... +...+..... ..-++|...|||...... ........ ...-
T Consensus 96 ~~~C~vg~~~~~~~~g~~~l~~~v~------~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g 169 (431)
T KOG3525|consen 96 NLTCGVGVAYNATIGGIRMLAGCVS------DAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCG 169 (431)
T ss_pred CCcCCCCcccCccccceeeeeeecc------cceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhcccccc
Confidence 7778999999999999999876322 1112222112 245789999999754321 11122222 2222
Q ss_pred HhcCCcEEEEecCCCCCCCCCCCCCCCCCCCeEEEeeeeCcccccCccccccCCCCCCcccccCCCCCCCCCCceEEEec
Q 000645 437 VNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516 (1377)
Q Consensus 437 a~~~GVivV~AAGN~G~~~~tvg~Pa~~s~~VIsVGA~~sp~~~~~~~~v~~~~~~g~~asfSSrGP~~dG~~KpDI~AP 516 (1377)
...+|.++|++.||.|...+...+-+ +.+++.++.-.--..-.. .+...+.-.....+.+|+.+| .. -
T Consensus 170 ~~~~gs~~v~as~ngg~~~d~c~c~~-y~~~i~t~~~~~~~~~~~-~p~y~~~C~~~~~s~~s~~~~-~~----~----- 237 (431)
T KOG3525|consen 170 RHGKGSIFVWASGNGGTCGDSCHCDG-YTNSIYTLSISCATQCGK-KPQYRERCASCLASTYSSGGP-TE----E----- 237 (431)
T ss_pred ccCCCCeeEEEecCcccccccccccc-ccCcceecccccccccCC-CccccccccccccccccCCCC-cc----e-----
Confidence 35679999999999997766655555 334444443221100000 111111122334455666665 11 0
Q ss_pred CCceeeccccC-CccccccCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcCccCCCC----------CCCC
Q 000645 517 GGAVAPVSTWT-LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGAL----------AEDK 585 (1377)
Q Consensus 517 G~~I~s~~~~~-~~~y~~~sGTSmAAP~VAG~aALLls~~~~~~p~lTp~~Ik~~L~~TA~~l~~~----------~~~~ 585 (1377)
.| ..+.. ........|||.++|++||.+++.+.+ +|.++..++..++..++...... ....
T Consensus 238 --~~--~~~~~~~~c~e~h~g~s~~~~~~a~~~~~~~~~----~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~ 309 (431)
T KOG3525|consen 238 --CI--VCTDPRHSCTEGHTGTSASAPLAAGIIALALEA----NPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVS 309 (431)
T ss_pred --ee--eecCCCccccccCCCCcCccchhcchhhhhhcc----CccccccchhhhhhhhcchhhccCCCceEecCCceee
Confidence 11 11111 234456789999999999999999999 88999999999998888653211 1235
Q ss_pred CcccccccCHHHHHHHHHhcCCCC
Q 000645 586 LSTGHGLLQVDKAYEYVQQYGNVP 609 (1377)
Q Consensus 586 ~~~G~GlIna~kAv~~l~~~~~~p 609 (1377)
..+|+|++++...+..+..+..+|
T Consensus 310 h~~g~~~~~~~~~~~~~~~~~~~~ 333 (431)
T KOG3525|consen 310 HLYGFGLLDAKALVSCAKTWTTVP 333 (431)
T ss_pred eeecccccCcchhhhhhccCccCC
Confidence 679999999998888777555443
No 47
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.6e-05 Score=103.42 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=96.5
Q ss_pred ccccCCCeEEEEEEccCCCCCccChhhHHHHHHHHHhCCC-cEEEeCcCCCC----CCCChHHHHHHHHHHHhcCCcEEE
Q 000645 371 NGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEHKC-DLINMSYGEPT----LLPDYGRFIDLVNEAVNKHRLVFV 445 (1377)
Q Consensus 371 ~GVAP~AkIi~vkV~d~~~g~~~t~s~ii~Ai~~Ai~~ga-dVINmS~G~~~----~~~~~~~~~~~a~~~a~~~GVivV 445 (1377)
.-+||.|+|..+-.... ....+..|+.+....-. -++-.||+... ..+.+-...+.+.+.+...|+.++
T Consensus 289 ~A~AP~A~I~lvvap~~------~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 289 HAMAPKANIDLVVAPNP------LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hccCccCceEEEEcCCC------ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 45899999998877322 12334444444333211 22334555421 112245667788888899999999
Q ss_pred EecCCCCCCCC------CCCCCCCCCCCeEEEee--eeCccc-ccCccc--------cc--cCCCCC-----CcccccCC
Q 000645 446 SSAGNSGPALN------TVGAPGGTSSSIIAVGA--YVSPAM-AAGAHC--------VV--EPPSEG-----LEYTWSSR 501 (1377)
Q Consensus 446 ~AAGN~G~~~~------tvg~Pa~~s~~VIsVGA--~~sp~~-~~~~~~--------v~--~~~~~g-----~~asfSSr 501 (1377)
+|+|..|...+ ++.+|+ +++.|.+||. +..... ..+.+. .. .-...| ....|-.+
T Consensus 363 AASGD~Gay~~~~~~~~sv~~Pa-sSPYVtsVGG~~~~~~~~~~~g~f~~~aW~~~~~g~g~vgsggGyS~~f~~PwyQ~ 441 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPA-SSPYVTSVGGYPISNAKFTSNGSFTETAWGYSSYGPGSVGSGGGYSIFFPRPWYQD 441 (1174)
T ss_pred EecccccccCCCcccceeecccC-CCccEEeecCeeEEEEEEecCceeEEEccCcccccCccccCCCceeeeeccceeec
Confidence 99999986543 466898 7899999999 321000 000000 00 000000 01111122
Q ss_pred CCC--CCCCCc---eEEEecCCceeeccccCCccccccCCCchhhHHHHHHHHHHHHHHh
Q 000645 502 GPT--ADGDLG---VCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMK 556 (1377)
Q Consensus 502 GP~--~dG~~K---pDI~APG~~I~s~~~~~~~~y~~~sGTSmAAP~VAG~aALLls~~~ 556 (1377)
|+. ..++.- +++.+|...+. -..++......|||.|||+.||++|++-|.+.
T Consensus 442 ~~~~~~~~r~i~dv~~~anp~~g~~---~~~g~~~~~~GGTS~AtPltAGiiAdi~q~~~ 498 (1174)
T COG4934 442 GPSVPSTGRLIPDVVAIANPYTGVV---IVFGNQTYVAGGTSLATPLTAGIIADIEQYIG 498 (1174)
T ss_pred ccccCCcceecCCccccccccCceE---EEECcEEEEecccccccchHHHHHHHHHHHhc
Confidence 211 012222 23333333221 11123456789999999999999999999864
No 48
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.50 E-value=0.0018 Score=75.54 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=29.4
Q ss_pred ccHHHHHHh---CCCCCCcccEEEEEecccCCCCCCCcc
Q 000645 102 IGADRFVEA---NPQFDGRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 102 tga~~f~~~---~p~~dGrgv~IaIlDTGVDp~~pgLq~ 137 (1377)
+|+..+.+. +..+.|+||+|||||||||+.||.|+-
T Consensus 12 ~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~ 50 (307)
T cd04852 12 LGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFAD 50 (307)
T ss_pred cCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCccc
Confidence 344455554 668999999999999999999999973
No 49
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=96.03 E-value=0.0075 Score=69.42 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCCCCcccEEEEEecccCCCCCCCcc-----cCCCCceEEEEEcCCCCC
Q 000645 112 PQFDGRGVVIAIFDSGVDPAAAGLQV-----TSDGKPKILDVIDCTGSG 155 (1377)
Q Consensus 112 p~~dGrgv~IaIlDTGVDp~~pgLq~-----t~dG~~KIid~~D~Tg~G 155 (1377)
..|+|+||+|||||||||..||.|+- ......++....++....
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLFHRKIVRYDSLSDTK 50 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCcCccCcccEEEeeccCCCC
Confidence 47999999999999999999999953 223567788777776553
No 50
>PTZ00262 subtilisin-like protease; Provisional
Probab=95.67 E-value=0.0071 Score=76.23 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=29.1
Q ss_pred cccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCc
Q 000645 101 EIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 101 etga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
.+++.+..+.-..+.|+||+|||||||||+.||+|+
T Consensus 300 ~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~ 335 (639)
T PTZ00262 300 LTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLH 335 (639)
T ss_pred hhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhh
Confidence 455555555444688999999999999999999996
No 51
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.45 E-value=0.008 Score=69.88 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=29.8
Q ss_pred CCCCCcccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCCCCc
Q 000645 112 PQFDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGSGD 156 (1377)
Q Consensus 112 p~~dGrgv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg~Gd 156 (1377)
++|+|+||+|||||||||+.||.|+- +++...|.++.++
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~------~~~~~~~~~~~~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAG------RDITTKSFVGGED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcC------CcccCcccCCCCC
Confidence 57999999999999999999999952 3444455554443
No 52
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=95.29 E-value=0.01 Score=67.68 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=22.9
Q ss_pred CCCCcccEEEEEecccCCCCCCCc
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
.|+|+||+|||||||||+.||.|+
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~ 27 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFR 27 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchh
Confidence 589999999999999999999996
No 53
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.24 E-value=0.016 Score=67.69 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCCCcccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCCC
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGS 154 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg~ 154 (1377)
+|+|+||+|||||||||+.||.|+-.-.-..++.--+|..+.
T Consensus 9 g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~ 50 (312)
T cd07489 9 GITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGD 50 (312)
T ss_pred CCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCc
Confidence 499999999999999999999996321112455444565544
No 54
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=95.13 E-value=0.016 Score=65.71 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCCCCCcccEEEEEecccCCCCCCCc
Q 000645 111 NPQFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 111 ~p~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
+..|+|+||+|||||||||+.||.|+
T Consensus 19 ~~~~~G~gv~VaViDsGi~~~h~~~~ 44 (255)
T cd04077 19 YDSSTGSGVDVYVLDTGIRTTHVEFG 44 (255)
T ss_pred ecCCCCCCcEEEEEcCCCCCCChhhh
Confidence 45699999999999999999999995
No 55
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=94.79 E-value=0.015 Score=68.92 Aligned_cols=25 Identities=40% Similarity=0.897 Sum_probs=23.0
Q ss_pred CCCCcccEEEEEecccCCCCCCCcc
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq~ 137 (1377)
.|.|+||+|||||||||+.||.|.-
T Consensus 7 ~~~G~gv~VaViDtGv~~~hp~~~~ 31 (346)
T cd07475 7 GYKGEGMVVAVIDSGVDPTHDAFRL 31 (346)
T ss_pred CCCCCCcEEEEEeCCCCCCChhHcc
Confidence 3799999999999999999999964
No 56
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=94.66 E-value=0.019 Score=65.96 Aligned_cols=26 Identities=35% Similarity=0.610 Sum_probs=23.3
Q ss_pred CCCCcccEEEEEecccCCCCCCCccc
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQVT 138 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq~t 138 (1377)
.+.|+||+|||||||||+.||+|+-.
T Consensus 6 g~~G~gv~IaviDtGid~~Hp~~~~~ 31 (273)
T cd07485 6 GTGGPGIIVAVVDTGVDGTHPDLQGN 31 (273)
T ss_pred ccCCCCcEEEEEeCCCCCCChhhccC
Confidence 46799999999999999999999654
No 57
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=94.53 E-value=0.022 Score=65.90 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=31.0
Q ss_pred CcccccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCcc
Q 000645 98 PKKEIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 98 Pk~etga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq~ 137 (1377)
+-..+++....++. ++|+||+|||||||||+.||.|.-
T Consensus 22 ~~~~~~~~~~w~~g--~~G~gv~VaViDtGv~~~h~~l~~ 59 (297)
T cd04059 22 PGLDLNVTPAWEQG--ITGKGVTVAVVDDGLEITHPDLKD 59 (297)
T ss_pred CCCCcccHHHHhCC--CCCcceEEEEEeCCcccCCHhHhh
Confidence 33456677766654 999999999999999999999953
No 58
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=94.46 E-value=0.018 Score=67.88 Aligned_cols=21 Identities=57% Similarity=0.862 Sum_probs=20.1
Q ss_pred CcccEEEEEecccCCCCCCCc
Q 000645 116 GRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 116 Grgv~IaIlDTGVDp~~pgLq 136 (1377)
|+||+|||||||||+.||.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~ 21 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLD 21 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHh
Confidence 899999999999999999994
No 59
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=94.14 E-value=0.047 Score=63.02 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=30.1
Q ss_pred CcccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCCC
Q 000645 116 GRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGS 154 (1377)
Q Consensus 116 Grgv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg~ 154 (1377)
|+||+|||||||||+.||.|+-..+...+++.-+|....
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~ 39 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDD 39 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccC
Confidence 899999999999999999997433344566666666543
No 60
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=94.03 E-value=0.025 Score=64.54 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.7
Q ss_pred CcccEEEEEecccCCCCCCCcc
Q 000645 116 GRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 116 Grgv~IaIlDTGVDp~~pgLq~ 137 (1377)
|+||+|||||||||+.||.|+-
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~ 22 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKN 22 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhh
Confidence 8999999999999999999964
No 61
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=93.92 E-value=0.027 Score=65.45 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=19.2
Q ss_pred cccEEEEEecccCCCCCCCc
Q 000645 117 RGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 117 rgv~IaIlDTGVDp~~pgLq 136 (1377)
|+|+|||||||||+.||+|+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~ 20 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLK 20 (291)
T ss_pred CceEEEEEeCCCCCCChhhh
Confidence 68999999999999999996
No 62
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=93.75 E-value=0.032 Score=63.58 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCCeEEEEEEccCCCCC-ccChhhHHHHHHHHHhCCCcEEEeCcCCCCCCC--ChHHHHHHHHHHHhcCCcEEEEecCCC
Q 000645 375 PGAQLISCKIGDTRLGS-METGTGLTRAFIAAVEHKCDLINMSYGEPTLLP--DYGRFIDLVNEAVNKHRLVFVSSAGNS 451 (1377)
Q Consensus 375 P~AkIi~vkV~d~~~g~-~~t~s~ii~Ai~~Ai~~gadVINmS~G~~~~~~--~~~~~~~~a~~~a~~~GVivV~AAGN~ 451 (1377)
-+++|+.+.++...... ......+.+++.+|.+.|+-||.-+ |...... .+.. -+...+++-|.|...+
T Consensus 101 ~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaA-GN~g~~~~~~~~~-------pa~~~~Vi~VgA~~~~ 172 (247)
T cd07491 101 KKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSA-SDQGAFTGDTYPP-------PAARDRIFRIGAADED 172 (247)
T ss_pred CCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEec-CCCCCcCCCcccC-------cccCCCeEEEEeeCCC
Confidence 35789888875432110 0014578889999999997776443 4332211 1110 1234689999888777
Q ss_pred CC
Q 000645 452 GP 453 (1377)
Q Consensus 452 G~ 453 (1377)
|.
T Consensus 173 g~ 174 (247)
T cd07491 173 GG 174 (247)
T ss_pred CC
Confidence 64
No 63
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=93.72 E-value=0.052 Score=61.60 Aligned_cols=33 Identities=39% Similarity=0.733 Sum_probs=28.8
Q ss_pred ccccHHHHHHhCCCCCCcccEEEEEecccCCCCCCC
Q 000645 100 KEIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGL 135 (1377)
Q Consensus 100 ~etga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgL 135 (1377)
+.+++..+.++. +|+||+|||||||||+.||.|
T Consensus 14 ~~~~~~~~~~~~---~G~gv~I~viDsGi~~~h~~l 46 (260)
T cd07484 14 DQIGAPKAWDIT---GGSGVTVAVVDTGVDPTHPDL 46 (260)
T ss_pred cccChHHHHhhc---CCCCCEEEEEeCCCCCCCccc
Confidence 456777777766 999999999999999999998
No 64
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=93.38 E-value=0.043 Score=63.17 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCCCcccEEEEEecccCCCCCCCc
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
.+.|+||+|||||+|||+.||.|+
T Consensus 6 g~~g~gV~VaViDsGid~~hp~l~ 29 (267)
T cd07476 6 GGGDPRITIAILDGPVDRTHPCFR 29 (267)
T ss_pred cCCCCCeEEEEeCCCcCCCChhhC
Confidence 588999999999999999999995
No 65
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=93.26 E-value=0.063 Score=62.21 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.0
Q ss_pred ccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCc
Q 000645 102 IGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 102 tga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
++|.+-++.. ...|+||+|||+|||||+.||+|+
T Consensus 2 i~~~~aw~~~-~g~G~gV~VaviDtGid~~Hpdl~ 35 (277)
T cd04843 2 INARYAWTKP-GGSGQGVTFVDIEQGWNLNHEDLV 35 (277)
T ss_pred CChHHHHHhc-CCCCCcEEEEEecCCCCCCChhhc
Confidence 3555556655 477999999999999999999996
No 66
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=92.96 E-value=0.06 Score=60.58 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.5
Q ss_pred CCcccEEEEEecccCCCCCCCcc
Q 000645 115 DGRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 115 dGrgv~IaIlDTGVDp~~pgLq~ 137 (1377)
+|+||+|||||+|||+.||.|.-
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~ 23 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAG 23 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccC
Confidence 69999999999999999999964
No 67
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=92.69 E-value=0.08 Score=62.00 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=26.0
Q ss_pred ccHHHHHHhCCCCCCcccEEEEEecccCCCCCCCc
Q 000645 102 IGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 102 tga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
+++...+++ .++|+||+|||||||||..|| |+
T Consensus 8 l~~~~~~~~--G~~G~Gv~VaViDTGv~~~h~-~~ 39 (298)
T cd07494 8 LNATRVHQR--GITGRGVRVAMVDTGFYAHPF-FE 39 (298)
T ss_pred cChhHHHhc--CCCCCCcEEEEEeCCCcCCch-hh
Confidence 455565655 489999999999999999999 53
No 68
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=92.36 E-value=0.077 Score=60.02 Aligned_cols=22 Identities=27% Similarity=0.758 Sum_probs=20.6
Q ss_pred CcccEEEEEecccCCCCCCCcc
Q 000645 116 GRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 116 Grgv~IaIlDTGVDp~~pgLq~ 137 (1377)
|+||+|||||||||+.||.|.-
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~ 22 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDG 22 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccc
Confidence 8999999999999999999953
No 69
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=92.14 E-value=0.078 Score=60.02 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=19.2
Q ss_pred cccEEEEEecccCCCCCCCc
Q 000645 117 RGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 117 rgv~IaIlDTGVDp~~pgLq 136 (1377)
|||+|||||||||+.||.|+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~ 21 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLK 21 (259)
T ss_pred CCCEEEEEeCCCCCCChhhc
Confidence 79999999999999999995
No 70
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=91.95 E-value=0.1 Score=60.42 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.9
Q ss_pred CCCCcccEEEEEecccCCCCCC
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAG 134 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pg 134 (1377)
.|+|+||+|||||||||..||.
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~ 22 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDA 22 (275)
T ss_pred CCCCCceEEEEEeCCccccccc
Confidence 4899999999999999998773
No 71
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=91.81 E-value=0.1 Score=58.83 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=23.7
Q ss_pred ccEEEEEecccCCCCCCCcccCCCCceEEEEEcCCC
Q 000645 118 GVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTG 153 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq~t~dG~~KIid~~D~Tg 153 (1377)
||+|||||||||+.||.|. .+++++.+.+.
T Consensus 1 GV~VaviDsGv~~~hp~l~------~~~~~~~~~~~ 30 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLA------GRVAQWADFDE 30 (254)
T ss_pred CCEEEEEeCCCCCCCcchh------cccCCceeccC
Confidence 8999999999999999994 24555555543
No 72
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=90.20 E-value=0.2 Score=55.65 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.1
Q ss_pred ccEEEEEecccCCCCCCCccc
Q 000645 118 GVVIAIFDSGVDPAAAGLQVT 138 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq~t 138 (1377)
||+|||||||||+.||.|.--
T Consensus 1 gV~VaViDsGi~~~h~~l~~~ 21 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNL 21 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcc
Confidence 799999999999999999643
No 73
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=89.88 E-value=0.17 Score=58.55 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=18.6
Q ss_pred ccEEEEEecccCCCCCCCcc
Q 000645 118 GVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq~ 137 (1377)
||+|||||||||+.||.|.-
T Consensus 1 gV~VaviDtGi~~~Hp~l~~ 20 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAG 20 (285)
T ss_pred CCEEEEecCCCCCCCcchhh
Confidence 79999999999999999954
No 74
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=87.65 E-value=0.48 Score=54.04 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=26.3
Q ss_pred ccEEEEEecccCCCCCCCcccC-CCCceEEEEEcCCCC
Q 000645 118 GVVIAIFDSGVDPAAAGLQVTS-DGKPKILDVIDCTGS 154 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq~t~-dG~~KIid~~D~Tg~ 154 (1377)
||+|||||||||+.||.|..-. ....+|+.-+|....
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~ 38 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDN 38 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccC
Confidence 8999999999999999994110 123467666666543
No 75
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=85.16 E-value=0.5 Score=53.49 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=16.9
Q ss_pred cEEEEEecccCCCCCCCc
Q 000645 119 VVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 119 v~IaIlDTGVDp~~pgLq 136 (1377)
|+|||||||||+.||.|+
T Consensus 1 V~VavIDsGvd~~hp~l~ 18 (239)
T cd05561 1 VRVGMIDTGIDTAHPALS 18 (239)
T ss_pred CEEEEEeCCCCCCCcccc
Confidence 789999999999999994
No 76
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=83.67 E-value=0.56 Score=52.00 Aligned_cols=19 Identities=37% Similarity=0.791 Sum_probs=18.1
Q ss_pred ccEEEEEecccCCCCCCCc
Q 000645 118 GVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq 136 (1377)
||+|||||||||+.||.|+
T Consensus 1 gv~V~iiDsGv~~~h~~l~ 19 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLK 19 (229)
T ss_pred CCEEEEEcCCCCCCChhHh
Confidence 7999999999999999995
No 77
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=83.63 E-value=0.56 Score=54.03 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=17.7
Q ss_pred ccEEEEEecccCCCCCCCc
Q 000645 118 GVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 118 gv~IaIlDTGVDp~~pgLq 136 (1377)
.|+|||||||||+.||.|+
T Consensus 1 ~V~VaviDtGi~~~hp~l~ 19 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLK 19 (294)
T ss_pred CcEEEEEeCCCCCCChhHh
Confidence 3899999999999999997
No 78
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=0.61 Score=54.72 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=23.4
Q ss_pred CCCCcccEEEEEecccCCCCCCCcc
Q 000645 113 QFDGRGVVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 113 ~~dGrgv~IaIlDTGVDp~~pgLq~ 137 (1377)
.|.|+||++||+|-|||+-||+|.-
T Consensus 157 g~tgknvttaimddgvdymhpdlk~ 181 (629)
T KOG3526|consen 157 GYTGKNVTTAIMDDGVDYMHPDLKS 181 (629)
T ss_pred cccCCCceEEeecCCchhcCcchhc
Confidence 5999999999999999999999954
No 79
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=83.36 E-value=5.7 Score=39.76 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=48.8
Q ss_pred ceeeEEEecCCCCCceEEEEEEeeeeccCCCCCcccccCceEEEE----EeeCCCceEEcCcceeecCCceEEEEEEcC-
Q 000645 626 TYRGIYLRDAGASQQSTEWTVQVEPKFHEDASNLEELVPFEECIE----LHSTDKAVLRAPEYLLLTHNGRSFNVVVDP- 700 (1377)
Q Consensus 626 ~~rGIylr~~~~~~~~~~~tv~v~p~~~~~~~~~~~~~~~~~~v~----l~~~~~~wv~vP~~~~l~~~~~~~~V~VDp- 700 (1377)
....|.++|. ..++.+|+++..+............ ....... .....+..|++|+ ++..+++|++++
T Consensus 10 ~~~~itl~N~--~~~~~ty~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vTV~a-----g~s~~v~vti~~p 81 (112)
T PF06280_consen 10 FSFTITLHNY--GDKPVTYTLSHVPVLTDKTDTEEGY-SILVPPVPSISTVSFSPDTVTVPA-----GQSKTVTVTITPP 81 (112)
T ss_dssp EEEEEEEEE---SSS-EEEEEEEE-EEEEEE--ETTE-EEEEEEE----EEE---EEEEE-T-----TEEEEEEEEEE--
T ss_pred eEEEEEEEEC--CCCCEEEEEeeEEEEeeEeeccCCc-ccccccccceeeEEeCCCeEEECC-----CCEEEEEEEEEeh
Confidence 4566777777 4477888888775443221100111 1111111 1123334555554 566799999998
Q ss_pred CCCCC---CeeEEEEEEEecCCCCCC-CeEEEEEE
Q 000645 701 TNLED---GLHYYEIYGIDCKAPGRG-PLFRIPVT 731 (1377)
Q Consensus 701 ~~L~~---G~h~~~v~~~D~~~~~~g-~~~~IPvT 731 (1377)
.++.+ ..|.|.|.+-+. .+ +.++||+.
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~----~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSS----DGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESS----TTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcC----CCCEEEEeeeC
Confidence 45654 577788887654 33 69999983
No 80
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=82.84 E-value=0.73 Score=51.71 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=17.5
Q ss_pred cEEEEEecccCCCCCCCcc
Q 000645 119 VVIAIFDSGVDPAAAGLQV 137 (1377)
Q Consensus 119 v~IaIlDTGVDp~~pgLq~ 137 (1377)
|+|||||||||+.||.|+-
T Consensus 1 V~VaviDsGi~~~hp~l~~ 19 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSG 19 (242)
T ss_pred CEEEEecCCCCCCChhhcc
Confidence 7899999999999999954
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=82.79 E-value=26 Score=44.57 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhccCcCChhhhhhHHHHHHHHHHhCCCChHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHcCCHHH
Q 000645 1134 EVRDAKMKVLGSLKQETDEECSDWKKLAASLKSEYPKYTPLLAKILEGLLSRSNVGDKIHHYEEVIDAANEVVDSIDQDE 1213 (1377)
Q Consensus 1134 ~~rd~~i~~l~kl~~~~~~~~~~~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~id~~~ 1213 (1377)
++...+-+.+-+|.. ..+...+|.+|+..+|++.-.+......+.-... -.....++..++-|++-+..-...
T Consensus 39 ~~~E~rA~ll~kLg~-----~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~--~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 39 AVLEKRAELLLKLGR-----KEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ--LSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc--cccccHHHHHHHHHHHHHhCcccc
Confidence 455566677778863 2357899999999999999988887777632210 011234555555566555554444
Q ss_pred HHhHhcccCCCCcHHHHHHHhhHHHhHHHHHHHHHHHHH--HhhhhhhhccccCccccccCCCccCCCCCCCchhHHHHH
Q 000645 1214 LAKFFSQKSDPEDEETEKIKKKMETTRDQLAEALYQKAL--AMLEIESLKGEKSGAEAATEGTTDVDKTSDSQPDLFEEN 1291 (1377)
Q Consensus 1214 l~~~~~~k~d~~~~~a~~~k~~m~~~k~~l~~AL~~k~~--al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1291 (1377)
..+.+-+.--+. .++++.=+..+.-..+||. ...++..+-.+. .-.+.+.+.
T Consensus 112 ~~~rl~L~~~~g--------~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~------------------~K~~~i~~l 165 (517)
T PF12569_consen 112 APRRLPLDFLEG--------DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP------------------EKAAIIESL 165 (517)
T ss_pred chhHhhcccCCH--------HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh------------------hHHHHHHHH
Confidence 444444443322 2344444444444455552 333332221100 011222333
Q ss_pred HHHHhhccc------C-----CCCc-----eeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCC
Q 000645 1292 FKELKKWAD------V-----KSPK-----YGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGW 1355 (1377)
Q Consensus 1292 ~~~l~kw~d------~-----~d~k-----~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw 1355 (1377)
+.++..=.+ . ..+. .+.|...|.-..|+|-.||+++++.|+. .|..-+++-.+..|+++.|=
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 322221110 0 0111 2236677888899999999999999985 45667999999999999985
Q ss_pred h
Q 000645 1356 S 1356 (1377)
Q Consensus 1356 ~ 1356 (1377)
-
T Consensus 244 ~ 244 (517)
T PF12569_consen 244 L 244 (517)
T ss_pred H
Confidence 4
No 82
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=81.84 E-value=0.72 Score=53.52 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=16.8
Q ss_pred cEEEEEecccCCCCCCCc
Q 000645 119 VVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 119 v~IaIlDTGVDp~~pgLq 136 (1377)
++|||||||||..||.|+
T Consensus 1 p~VaviDtGi~~~hp~l~ 18 (291)
T cd04847 1 PIVCVLDSGINRGHPLLA 18 (291)
T ss_pred CEEEEecCCCCCCChhhh
Confidence 589999999999999995
No 83
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=81.35 E-value=0.97 Score=51.54 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=22.8
Q ss_pred EEEEEecccCCCCCCCc-ccCCCCceEEEEEcCCCC
Q 000645 120 VIAIFDSGVDPAAAGLQ-VTSDGKPKILDVIDCTGS 154 (1377)
Q Consensus 120 ~IaIlDTGVDp~~pgLq-~t~dG~~KIid~~D~Tg~ 154 (1377)
+|||||||||+.||.|+ -... ..++..-+++.+.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-~~~~~~~~~~~~~ 35 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-WSKVPGGYNFVDG 35 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-EEEEEEEEETTTT
T ss_pred CEEEEcCCcCCCChhHccCCcc-cccccceeeccCC
Confidence 69999999999999997 1100 2244445556554
No 84
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=75.13 E-value=7.1 Score=35.68 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=43.0
Q ss_pred EEEeeeccceeeeecccccccccccccccceEEEEEeCCCceeeeccCCCC--------C-CCCCCccEEEEEE
Q 000645 930 TYKFKLEDGAEVKPQIPLLNNRIYDTKFESQFYMISDTNKRVYAQGDVYPD--------Y-SKLPKGDYNLQLY 994 (1377)
Q Consensus 930 tY~~~~~~~~~v~p~~p~l~~~lYes~~~~q~~~i~d~nk~~~~~gd~yp~--------~-~kl~KG~Y~~~~q 994 (1377)
.|+|.+++++.|+..+..... +..| .|||+++..+..-|.++. . ..++.|.|-|+++
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~-------d~dl-~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG-------DADL-YLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS-------SEEE-EEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC-------CeEE-EEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEEE
Confidence 599999999999988765543 3334 499999888887777763 1 2468999999985
No 85
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=67.18 E-value=25 Score=42.84 Aligned_cols=71 Identities=17% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhccc--CCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCChhHHH
Q 000645 1287 LFEENFKELKKWAD--VKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGWSHLTT 1360 (1377)
Q Consensus 1287 ~~~~~~~~l~kw~d--~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw~h~~~ 1360 (1377)
...+..+.+.+|.. +.|.-......+-+.+.++||.|.+++.+.++.. |..+.+-...++++++|=..-+.
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~---P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR---PDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHH
Confidence 45667778888874 4555455567778999999999999999999842 45566678899999999875443
No 86
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=58.97 E-value=5.9 Score=43.17 Aligned_cols=17 Identities=47% Similarity=0.878 Sum_probs=16.1
Q ss_pred cEEEEEecccCCCCCCC
Q 000645 119 VVIAIFDSGVDPAAAGL 135 (1377)
Q Consensus 119 v~IaIlDTGVDp~~pgL 135 (1377)
|+|||||+|||+.||.|
T Consensus 1 v~VaiiD~G~~~~~~~~ 17 (241)
T cd00306 1 VTVAVIDTGVDPDHPDL 17 (241)
T ss_pred CEEEEEeCCCCCCCcch
Confidence 68999999999999987
No 87
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=55.90 E-value=75 Score=38.92 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHhhccc--CCCC--ceeehhhhHHHHhCcHhHHHHHHHh--hhhcCCCCcHHHHHHHHHHHHHHhCCh
Q 000645 1289 EENFKELKKWAD--VKSP--KYGSLLVLREKRCGRLGTALKVLGD--IIQDDSEPPKKKLYELKISLLEELGWS 1356 (1377)
Q Consensus 1289 ~~~~~~l~kw~d--~~d~--k~~~~~~~~~~~~~~~g~alk~l~k--~~~~~~~~~~k~~~~~~~~l~~~lgw~ 1356 (1377)
.+..+.+.+|.. +.|. -++....|-..+.|+|+.|.+++++ .++. . |..+.+....+++.++|=.
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~-p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE--Q-LDANDLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--C-CCHHHHHHHHHHHHHcCCH
Confidence 455667778874 4555 4444566778999999999999995 5442 2 3445566888999988864
No 88
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=54.63 E-value=2.8e+02 Score=29.18 Aligned_cols=71 Identities=15% Similarity=-0.016 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcccCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCChhHHHH
Q 000645 1288 FEENFKELKKWADVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGWSHLTTY 1361 (1377)
Q Consensus 1288 ~~~~~~~l~kw~d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw~h~~~~ 1361 (1377)
-.+.|.+..+.. ..+.........-....|+|-+|++++.+.++. .+...+.+.....+....|-..-+..
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444432 223333333344456789999999999999875 23334555566777777776544433
No 89
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=54.36 E-value=81 Score=34.83 Aligned_cols=76 Identities=20% Similarity=0.143 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhccCcCChhhhhhHHHHHHHHHHhCCCChHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHcC
Q 000645 1130 RLEEEVRDAKMKVLGSLKQETDEECSDWKKLAASLKSEYPKYTPLLAKILEGLLSRSNVGDKIHHYEEVIDAANEVVDSI 1209 (1377)
Q Consensus 1130 ~~~e~~rd~~i~~l~kl~~~~~~~~~~~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~i 1209 (1377)
.|.|.+|-++.+-+.|+. .-.+-.++..++||.-|--+.+.|-.-+.. +.|+.+-..=
T Consensus 114 km~EslRi~~~~e~~k~~--------~Re~~iak~m~K~pq~~a~~~a~~~k~e~~--------------a~a~~~r~er 171 (225)
T KOG4848|consen 114 KMRESLRILYTKEPEKFT--------FREAEIAKNMKKYPQTLAKYEASLVKQEQE--------------ADAKEVRLER 171 (225)
T ss_pred HHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHHHHhHHH--------------hhHHHHHHHH
Confidence 577777777666666664 123444556667777666555555443322 2222232233
Q ss_pred CHHHHHhHhcccCCCCcH
Q 000645 1210 DQDELAKFFSQKSDPEDE 1227 (1377)
Q Consensus 1210 d~~~l~~~~~~k~d~~~~ 1227 (1377)
-+.++-.|||-+.||+|+
T Consensus 172 li~eiqe~fGy~vDprd~ 189 (225)
T KOG4848|consen 172 LIREIQEYFGYWVDPRDP 189 (225)
T ss_pred HHHHHHHHhCccCCCCCH
Confidence 346788999999999985
No 90
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=52.86 E-value=8.1 Score=46.93 Aligned_cols=27 Identities=33% Similarity=0.668 Sum_probs=24.5
Q ss_pred CCCCCcccEEEEEecccCCCCCCCccc
Q 000645 112 PQFDGRGVVIAIFDSGVDPAAAGLQVT 138 (1377)
Q Consensus 112 p~~dGrgv~IaIlDTGVDp~~pgLq~t 138 (1377)
-.+.|+||+|+|+|||||..||.|+..
T Consensus 137 ~~~~g~gv~~~vid~gv~~~~~~~~~~ 163 (508)
T COG1404 137 AGLTGKGVTVAVIDTGVDASHPDLAGS 163 (508)
T ss_pred cCCCCCCeEEEEeccCCCCCChhhhcc
Confidence 479999999999999999999999643
No 91
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=50.46 E-value=12 Score=46.93 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=27.2
Q ss_pred cHHHHHHhCCCCCCcccEEEEEecccCCCCCCCc
Q 000645 103 GADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQ 136 (1377)
Q Consensus 103 ga~~f~~~~p~~dGrgv~IaIlDTGVDp~~pgLq 136 (1377)
||+-..++ +|.|.+|.|||||||+--.||-|.
T Consensus 189 ~Ad~LWk~--GyTGa~VkvAiFDTGl~~~HPHFr 220 (1033)
T KOG4266|consen 189 GADHLWKK--GYTGAKVKVAIFDTGLRADHPHFR 220 (1033)
T ss_pred chhhHHhc--cccCCceEEEEeecccccCCcccc
Confidence 55555555 499999999999999999999994
No 92
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=48.49 E-value=2.6e+02 Score=33.21 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhcccCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhC-ChhHHHHHHh
Q 000645 1286 DLFEENFKELKKWADVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELG-WSHLTTYEKL 1364 (1377)
Q Consensus 1286 ~~~~~~~~~l~kw~d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lg-w~h~~~~~~~ 1364 (1377)
+...+.|.+..+- +..+.........-....|++..|++++.++++... ......+..++.++..+| ++....+.++
T Consensus 197 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 197 DAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444444442 222332333333445678999999999999987421 112345566667776665 4455555555
Q ss_pred hcc
Q 000645 1365 WMH 1367 (1377)
Q Consensus 1365 ~~~ 1367 (1377)
...
T Consensus 275 ~~~ 277 (389)
T PRK11788 275 ALE 277 (389)
T ss_pred HHH
Confidence 433
No 93
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=37.49 E-value=27 Score=31.11 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCceeeeccCCCC--CCCCCCccEEEEEEEecCChHHHHhccCCc
Q 000645 967 TNKRVYAQGDVYPD--YSKLPKGDYNLQLYLRHDNVQYLEKMKQLV 1010 (1377)
Q Consensus 967 ~nk~~~~~gd~yp~--~~kl~KG~Y~~~~qirh~~~~~Le~lk~~~ 1010 (1377)
-+++-+..++.-+. ...|+.|+|+++++.+..+...-+.-+.+.
T Consensus 17 ~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~ 62 (66)
T PF07495_consen 17 FDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLT 62 (66)
T ss_dssp TESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS-B-SS-EEEE
T ss_pred CCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCCCcCcccEEEE
Confidence 34455555544322 468999999999999987765544333333
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=37.12 E-value=3.3e+02 Score=38.30 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.1
Q ss_pred cCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcC
Q 000645 1300 DVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDD 1334 (1377)
Q Consensus 1300 d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~ 1334 (1377)
++.+...+........+.|+|..|++++.+.++..
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45555555455566778999999999999999743
No 95
>PLN03218 maturation of RBCL 1; Provisional
Probab=36.98 E-value=3.1e+02 Score=38.25 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=18.2
Q ss_pred HHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHH
Q 000645 1314 EKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLL 1350 (1377)
Q Consensus 1314 ~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~ 1350 (1377)
....|++..|++++.++++.. ..+....+..++.+|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc 799 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 444566666666666665532 223334444444443
No 96
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=36.68 E-value=18 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=18.8
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCcCCC
Q 000645 284 DGEVWRVALDTQSLEDEPDHGKLADF 309 (1377)
Q Consensus 284 ~GgV~VAVIDTGI~~~d~~h~dL~~~ 309 (1377)
..||.||||||| +|+.|++|.+.
T Consensus 3 G~GV~VaVIDtG---Id~~hp~F~~~ 25 (455)
T cd07478 3 GKGVLVGIIDTG---IDYLHPEFRNE 25 (455)
T ss_pred CCceEEEEEECC---CCCCCHHHccC
Confidence 348999999999 67788888753
No 97
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=35.42 E-value=6.7e+02 Score=33.03 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhccCcCChhhhhhHHHHHHHHHHhCCCChHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHc
Q 000645 1132 EEEVRDAKMKVLGSLKQETDEECSDWKKLAASLKSEYPKYTPLLAKILEGLLSRSNVGDKIHHYEEVIDAANEVVDS 1208 (1377)
Q Consensus 1132 ~e~~rd~~i~~l~kl~~~~~~~~~~~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~ 1208 (1377)
...+||+-++.+.+=+.+ +...+++.+++.+|+|..++...+-.... ..+.++-+++.++++..
T Consensus 42 ~~~~~~~~~~~~~~g~~~------~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-------~g~~~~A~~~l~~~l~~ 105 (656)
T PRK15174 42 EQNIILFAIACLRKDETD------VGLTLLSDRVLTAKNGRDLLRRWVISPLA-------SSQPDAVLQVVNKLLAV 105 (656)
T ss_pred ccCHHHHHHHHHhcCCcc------hhHHHhHHHHHhCCCchhHHHHHhhhHhh-------cCCHHHHHHHHHHHHHh
Confidence 356888888887665532 45799999999999999887776644332 23344555666666554
No 98
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=34.57 E-value=7.5e+02 Score=32.22 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHHhhhc
Q 000645 1156 DWKKLAASLKSEYPKYTPLLAKILEGLLS 1184 (1377)
Q Consensus 1156 ~~~~~~~~l~~~~p~~lpl~~~~l~~l~~ 1184 (1377)
+..++|+++.+.+|++...+......+..
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 45688888888899988877666554433
No 99
>PRK12370 invasion protein regulator; Provisional
Probab=34.14 E-value=7.1e+02 Score=31.91 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHHHhCCCChHHHHHH--HHhhhccCCCCCccchHHHHHHHHHHHHHc
Q 000645 1152 EECSDWKKLAASLKSEYPKYTPLLAKI--LEGLLSRSNVGDKIHHYEEVIDAANEVVDS 1208 (1377)
Q Consensus 1152 ~~~~~~~~~~~~l~~~~p~~lpl~~~~--l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~ 1208 (1377)
+...+..++|++..+..|++-..+... ++........-+.....++-+.++++.+++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 334466789999999999998766432 111111000001234456777778887765
No 100
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=33.89 E-value=28 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.2
Q ss_pred ecCCCeEEEEEcCCCCCCCCCCCCcC
Q 000645 282 WHDGEVWRVALDTQSLEDEPDHGKLA 307 (1377)
Q Consensus 282 w~~GgV~VAVIDTGI~~~d~~h~dL~ 307 (1377)
|+..||+|||+||| +|+.|+.|.
T Consensus 20 ~dgr~v~iai~dtg---vd~~~~~lq 42 (412)
T cd04857 20 YDGRGVLIAILDTG---VDPGAPGLQ 42 (412)
T ss_pred CCCCCcEEEEecCC---CCCCCCccc
Confidence 34559999999999 566777775
No 101
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.79 E-value=1.5e+02 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=32.7
Q ss_pred EEEEEeeCCCceEEcCcceeecCCceEEEEEEcCCCCCCCeeEEEEEEEecCCCCCCCeEEEEEEE
Q 000645 667 ECIELHSTDKAVLRAPEYLLLTHNGRSFNVVVDPTNLEDGLHYYEIYGIDCKAPGRGPLFRIPVTI 732 (1377)
Q Consensus 667 ~~v~l~~~~~~wv~vP~~~~l~~~~~~~~V~VDp~~L~~G~h~~~v~~~D~~~~~~g~~~~IPvTv 732 (1377)
.+..|..-+..|+..+... . .+.=+.|+||.|.-+|.+.|....+.....+|.++|
T Consensus 10 Y~Y~l~g~d~~W~~~~~~~------~----~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 10 YRYRLEGFDDEWITLGSYS------N----SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp EEEEEETTESSEEEESSTS-----------EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred EEEEEECCCCeEEECCCCc------E----EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 3455555556698865531 1 333445799999999999997655444335666655
No 102
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=4e+02 Score=36.46 Aligned_cols=76 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHhhHHHhH----HHHHHHHHHHHHHhhhhhhhccccCccccccCCCccCCCCCCCchhHHHHHHHHHhhcccCCCCc
Q 000645 1230 EKIKKKMETTR----DQLAEALYQKALAMLEIESLKGEKSGAEAATEGTTDVDKTSDSQPDLFEENFKELKKWADVKSPK 1305 (1377)
Q Consensus 1230 ~~~k~~m~~~k----~~l~~AL~~k~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kw~d~~d~k 1305 (1377)
.+-+...++.+ ..|.+-|.+++.+.-=++.-. .+-+.|.+.|++ .+
T Consensus 818 q~y~~~~~e~~~eFs~~lf~y~ve~~k~~eLl~~f~---------------------~~~s~L~qFf~~---------~d 867 (1128)
T KOG4121|consen 818 QDYETFFNEYPKEFSFFLFEYLVEHGKLGELLFRFP---------------------QQHSVLIQFFQE---------RD 867 (1128)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhchHHHHHhcch---------------------hhHHHHHHHHhh---------cc
Confidence 34445555555 567777887776543222111 123455666654 66
Q ss_pred eeehhhhHHHHhCcHhHHHHHHHhhhhcCC
Q 000645 1306 YGSLLVLREKRCGRLGTALKVLGDIIQDDS 1335 (1377)
Q Consensus 1306 ~~~~~~~~~~~~~~~g~alk~l~k~~~~~~ 1335 (1377)
+..++--|+..+|.|+||.+.|-.+.++++
T Consensus 868 ~~~lsWi~ei~nGdy~rAs~~L~~la~~e~ 897 (1128)
T KOG4121|consen 868 YGHLSWIQEILNGDYERASNTLLNLAVDEE 897 (1128)
T ss_pred ccccHHHHHHhcCcHHHHHHHHHHhcchHH
Confidence 888999999999999999999999987654
No 103
>PLN03188 kinesin-12 family protein; Provisional
Probab=30.01 E-value=1.2e+02 Score=42.14 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHhhhccCC-----------------------------CCCc------cc-------h
Q 000645 1157 WKKLAASLKSEYPKYTPLLAKILEGLLSRSN-----------------------------VGDK------IH-------H 1194 (1377)
Q Consensus 1157 ~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~~-----------------------------~~~~------~~-------~ 1194 (1377)
.-+-|.+|.|+|=+-|.-|-.+++.++..|. .++| ++ .
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3678999999999888888888888776541 0000 11 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhHhcccCCCC-cHHHHHHHhhHHHhHHHH
Q 000645 1195 YEEVIDAANEVVDSIDQDELAKFFSQKSDPE-DEETEKIKKKMETTRDQL 1243 (1377)
Q Consensus 1195 ~~~ii~~ad~vi~~id~~~l~~~~~~k~d~~-~~~a~~~k~~m~~~k~~l 1243 (1377)
..|-|.||.+++=.+...|=|.-++-|.-.. +.+++|.+|+|||-|.--
T Consensus 1192 taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1192 TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999988888888777777663331 247788999888766543
No 104
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=28.91 E-value=7.5e+02 Score=32.21 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHHHhhccc--CCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCChhHHHHHHhh
Q 000645 1289 EENFKELKKWAD--VKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGWSHLTTYEKLW 1365 (1377)
Q Consensus 1289 ~~~~~~l~kw~d--~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw~h~~~~~~~~ 1365 (1377)
.++...+.++.. +++..+......-....|++..|++.+.++++.. |.....+..+..++.++|=..--.+.++.
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKDPRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344445555543 3333344444445566788888888888888742 33334455555555555443333333333
No 105
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.64 E-value=5.8e+02 Score=30.25 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=19.9
Q ss_pred ehhhhHHHHhCcHhHHHHHHHhhhhc
Q 000645 1308 SLLVLREKRCGRLGTALKVLGDIIQD 1333 (1377)
Q Consensus 1308 ~~~~~~~~~~~~~g~alk~l~k~~~~ 1333 (1377)
.....-....|++..|++++.+.++.
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 33444566789999999999999874
No 106
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=27.23 E-value=1.1e+02 Score=26.86 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcc--cCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHH
Q 000645 1287 LFEENFKELKKWA--DVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKIS 1348 (1377)
Q Consensus 1287 ~~~~~~~~l~kw~--d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~ 1348 (1377)
.+.++..-+.+.+ ++.+..+......-....|+|-.|.+.|.++++.. |...+.+..+.+
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~a~ 67 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHHhc
Confidence 3556666666665 34556566667777888999999999999999853 233445554444
No 107
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=26.65 E-value=97 Score=31.08 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHhhcc------c-CCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHH----HHHHHHHHHHHhCChh
Q 000645 1293 KELKKWA------D-VKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKK----LYELKISLLEELGWSH 1357 (1377)
Q Consensus 1293 ~~l~kw~------d-~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~----~~~~~~~l~~~lgw~h 1357 (1377)
||++||+ | +-++|++.-+++-++|.+.|+.|.++|.-+-..-+ ..++ ..+.+.-++++||=+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqeikp~l~ELGI~t 97 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQEIKPTLKELGIST 97 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHHHhHHHHHHCCCC
Confidence 6677775 2 46789998899999999999999999986543211 1233 3455556778888543
No 108
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=26.12 E-value=1e+02 Score=31.28 Aligned_cols=62 Identities=27% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHHhhcc------c-CCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHH----HHHHHHHHHHhCCh
Q 000645 1293 KELKKWA------D-VKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKL----YELKISLLEELGWS 1356 (1377)
Q Consensus 1293 ~~l~kw~------d-~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~----~~~~~~l~~~lgw~ 1356 (1377)
||++||. | +-++|++.-+++-++|.+.|+.|.++|.-+-..-+ ..++. .+.+.-++++||=+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqElkPtl~ELGI~ 99 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQELKPTLEELGIP 99 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHhhHHHHhCCC
Confidence 4888886 2 35688888889999999999999999987754322 12224 34444566777754
No 109
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=25.48 E-value=60 Score=40.30 Aligned_cols=77 Identities=27% Similarity=0.495 Sum_probs=37.2
Q ss_pred cEEEEEecccCCCCCCCcccCCCCceEEE--------------EEcCCCCCcccCcceeeeCCC--CcEeecccceEEeC
Q 000645 119 VVIAIFDSGVDPAAAGLQVTSDGKPKILD--------------VIDCTGSGDIDTSTVIKADSD--GCIRGASGATLVVN 182 (1377)
Q Consensus 119 v~IaIlDTGVDp~~pgLq~t~dG~~KIid--------------~~D~Tg~Gdvd~~~~v~~~~d--g~i~~~sGr~l~i~ 182 (1377)
-.|=||||+-||.+|-| .|||+ -+=|-.+|++=.|..=.++.+ |-+..+++.++.|-
T Consensus 98 srIyviD~~~dPr~P~l-------~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~ 170 (461)
T PF05694_consen 98 SRIYVIDTKTDPRKPRL-------HKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVK 170 (461)
T ss_dssp --EEEEE--S-TTS-EE-------EEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EE
T ss_pred CcEEEEECCCCCCCCce-------EeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccc
Confidence 35789999999999988 36665 244666677766655444334 33788899999999
Q ss_pred CcccCCCcceEEeeeeeecc
Q 000645 183 SSWKNPSGEWHVGYKLVYEL 202 (1377)
Q Consensus 183 ~~w~~psg~~~vG~k~~~~l 202 (1377)
+.|..+.+.=.+|+..-|..
T Consensus 171 g~We~~~~~~~~gYDfw~qp 190 (461)
T PF05694_consen 171 GRWEKDRGPQPFGYDFWYQP 190 (461)
T ss_dssp EE--SB-TT------EEEET
T ss_pred ceeccCCCCCCCCCCeEEcC
Confidence 99999888766775554443
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.32 E-value=9e+02 Score=32.30 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhCCCChHHHHHHHHhhhccCCCCCccchHHHHHHHHHHHHHcCCHHHHHhHhcccCCCCcHHHHHHHhh
Q 000645 1156 DWKKLAASLKSEYPKYTPLLAKILEGLLSRSNVGDKIHHYEEVIDAANEVVDSIDQDELAKFFSQKSDPEDEETEKIKKK 1235 (1377)
Q Consensus 1156 ~~~~~~~~l~~~~p~~lpl~~~~l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~id~~~l~~~~~~k~d~~~~~a~~~k~~ 1235 (1377)
+...+++.+.+..|+|...+..+...|-.. .+.+|=+..|+..++ .+|+.
T Consensus 104 ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-------~~~eeA~~~~~~~l~--------------~~p~~--------- 153 (694)
T PRK15179 104 EGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-------QGIEAGRAEIELYFS--------------GGSSS--------- 153 (694)
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-------ccHHHHHHHHHHHhh--------------cCCCC---------
Confidence 457888888888888888888887777653 445555555555544 34442
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhccccCccccccCCCccCCCCCCCchhHHHHHHHHHhhcccCCCCceeehhhhHHH
Q 000645 1236 METTRDQLAEALYQKALAMLEIESLKGEKSGAEAATEGTTDVDKTSDSQPDLFEENFKELKKWADVKSPKYGSLLVLREK 1315 (1377)
Q Consensus 1236 m~~~k~~l~~AL~~k~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kw~d~~d~k~~~~~~~~~~ 1315 (1377)
.++++.+|.+|.++.. -+.-.+.|.++.. -.+.+.+.+.=.....+
T Consensus 154 --------~~~~~~~a~~l~~~g~-------------------------~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 154 --------AREILLEAKSWDEIGQ-------------------------SEQADACFERLSR-QHPEFENGYVGWAQSLT 199 (694)
T ss_pred --------HHHHHHHHHHHHHhcc-------------------------hHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Confidence 2456777777766542 2234556666666 33333443332233355
Q ss_pred HhCcHhHHHHHHHhhhhcC
Q 000645 1316 RCGRLGTALKVLGDIIQDD 1334 (1377)
Q Consensus 1316 ~~~~~g~alk~l~k~~~~~ 1334 (1377)
..|+...|.-.+.+.++-.
T Consensus 200 ~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HcCCHHHHHHHHHHHHHhh
Confidence 6788888888888887754
No 111
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=24.33 E-value=45 Score=32.52 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEeCCCceeeeccCCCCCCCCCCccEEEEEEEe
Q 000645 963 MISDTNKRVYAQGDVYPDYSKLPKGDYNLQLYLR 996 (1377)
Q Consensus 963 ~i~d~nk~~~~~gd~yp~~~kl~KG~Y~~~~qir 996 (1377)
+-||.|...++-|-+.- .++|++|+|||+||+.
T Consensus 39 I~~~~n~vhy~~Gqte~-~I~L~PG~htLtl~~~ 71 (87)
T PF14347_consen 39 IPFNINGVHYGKGQTEL-NIELPPGKHTLTLQLG 71 (87)
T ss_pred eeecCCeEEeCCCEEEE-EEEeCCCCEEEEEEeC
Confidence 34555555553332222 4789999999999984
No 112
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=23.68 E-value=7.6e+02 Score=33.10 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhC---CCChHHHHHH
Q 000645 1156 DWKKLAASLKSEY---PKYTPLLAKI 1178 (1377)
Q Consensus 1156 ~~~~~~~~l~~~~---p~~lpl~~~~ 1178 (1377)
+..+.|++|++.. |++..++++.
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~ 280 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVAS 280 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 4567788888875 6665555444
No 113
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=22.96 E-value=1e+03 Score=31.80 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhC---CCChHH-HHHH---HHhhhccCCCCCccchHHHHHHHHHHHHHc
Q 000645 1157 WKKLAASLKSEY---PKYTPL-LAKI---LEGLLSRSNVGDKIHHYEEVIDAANEVVDS 1208 (1377)
Q Consensus 1157 ~~~~~~~l~~~~---p~~lpl-~~~~---l~~l~~~~~~~~~~~~~~~ii~~ad~vi~~ 1208 (1377)
..+.|+.|.+.+ |+..|. ..++ |-.|.. ..+.++.++.-.++++.
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~-------~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLA-------RDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhhcc
Confidence 456777887654 443442 2222 223322 23456677777776665
No 114
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.45 E-value=1.8e+03 Score=31.10 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=39.4
Q ss_pred HHHHHHHhhcc--cCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCCh
Q 000645 1289 EENFKELKKWA--DVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGWS 1356 (1377)
Q Consensus 1289 ~~~~~~l~kw~--d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw~ 1356 (1377)
.++...+++.+ ++.+.....-...-....|++..|++.+.++++. .+........+..++..+|-.
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCH
Confidence 44444455554 3444443333344455779999999999998863 223334555566677777765
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=9.8e+02 Score=28.74 Aligned_cols=101 Identities=20% Similarity=0.173 Sum_probs=58.0
Q ss_pred e-EEcCcceeecCCceEEEEEEcCCCC--CCCeeEEEEEEEecCCCCCCCeEEEEEEEEecccccCCCCceeeeecccCC
Q 000645 678 V-LRAPEYLLLTHNGRSFNVVVDPTNL--EDGLHYYEIYGIDCKAPGRGPLFRIPVTIIKPTAVVKRPPLVSFSRMSFLP 754 (1377)
Q Consensus 678 w-v~vP~~~~l~~~~~~~~V~VDp~~L--~~G~h~~~v~~~D~~~~~~g~~~~IPvTvv~P~~~~~~~~~~~~~~~~~~~ 754 (1377)
| +.++...-+++..+.--+..||++| +.|...-.|..||.++-..||--.++++. +.....+++.|.|
T Consensus 127 WDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 127 WDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSP 197 (311)
T ss_pred eEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcC
Confidence 5 3445555555555666678899866 34444458999999988888765555543 1124456667776
Q ss_pred -CeeEEEEeecCCCCcEEEEEEeecCCCCcceEEEEeeccccCC
Q 000645 755 -GQIERRFIEVPLGATWVEATMRTSGFDTTRRFFVDTVQVCPLQ 797 (1377)
Q Consensus 755 -G~i~R~Fv~VP~Gat~~~v~l~~~~~~~~~~f~~h~~ql~p~~ 797 (1377)
|. ++-+-....|+-+--. ++. -++|+.+..|..
T Consensus 198 dGK----~iLlsT~~s~~~~lDA---f~G---~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 198 DGK----SILLSTNASFIYLLDA---FDG---TVKSTFSGYPNA 231 (311)
T ss_pred CCC----EEEEEeCCCcEEEEEc---cCC---cEeeeEeeccCC
Confidence 53 3334444444433211 111 166677766666
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=2.2e+02 Score=33.36 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcccCCCCceeehhhhHHHHhCcHhHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHhCCh
Q 000645 1288 FEENFKELKKWADVKSPKYGSLLVLREKRCGRLGTALKVLGDIIQDDSEPPKKKLYELKISLLEELGWS 1356 (1377)
Q Consensus 1288 ~~~~~~~l~kw~d~~d~k~~~~~~~~~~~~~~~g~alk~l~k~~~~~~~~~~k~~~~~~~~l~~~lgw~ 1356 (1377)
-...+++|..=. +.+.++..|..-.-.+.|+|+.|+++++.+++|+ |.....++.++.+++..|=+
T Consensus 71 Aq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 71 AQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCc
Confidence 345677766555 8888899999999999999999999999999975 44455677778888877765
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=20.41 E-value=6e+02 Score=24.11 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=31.4
Q ss_pred hhhHHHHhCcHhHHHHHHHhhhhcCCCC-cHHHHHHHHHHHHHHhCC-hhHHHHH
Q 000645 1310 LVLREKRCGRLGTALKVLGDIIQDDSEP-PKKKLYELKISLLEELGW-SHLTTYE 1362 (1377)
Q Consensus 1310 ~~~~~~~~~~~g~alk~l~k~~~~~~~~-~~k~~~~~~~~l~~~lgw-~h~~~~~ 1362 (1377)
...-....|+|..|++++.++++..... ..-..+.....++..+|= .-...+.
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 4444667889999999999998743111 123445555666666643 3333333
No 118
>smart00150 SPEC Spectrin repeats.
Probab=20.32 E-value=4.2e+02 Score=24.53 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=37.1
Q ss_pred hCCCChHHHHHHHHhhhccC-CCCCccchHHHHHHHHHHHHHcCCHHHHHhHhcccCCCCcHHHHHHHhhHHHhHHHHHH
Q 000645 1167 EYPKYTPLLAKILEGLLSRS-NVGDKIHHYEEVIDAANEVVDSIDQDELAKFFSQKSDPEDEETEKIKKKMETTRDQLAE 1245 (1377)
Q Consensus 1167 ~~p~~lpl~~~~l~~l~~~~-~~~~~~~~~~~ii~~ad~vi~~id~~~l~~~~~~k~d~~~~~a~~~k~~m~~~k~~l~~ 1245 (1377)
.+|+.+.-....++.+..-. +...+...++.|...++.+++. ..+..+.-...-.++..+-+.|..
T Consensus 25 ~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-------------~~~~~~~i~~~~~~l~~~w~~l~~ 91 (101)
T smart00150 25 DLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE-------------GHPDAEEIEERLEELNERWEELKE 91 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-------------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45566655555544443211 1123456677888888888775 112211223333555666666655
Q ss_pred HHHHHHH
Q 000645 1246 ALYQKAL 1252 (1377)
Q Consensus 1246 AL~~k~~ 1252 (1377)
.+..+..
T Consensus 92 ~~~~r~~ 98 (101)
T smart00150 92 LAEERRQ 98 (101)
T ss_pred HHHHHHH
Confidence 5555443
No 119
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=20.25 E-value=2.1e+02 Score=28.78 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=35.5
Q ss_pred EEEee-CCCceEEcCcceeecCCceEEEEEEcCCCCCCCeeEEEEEEE
Q 000645 669 IELHS-TDKAVLRAPEYLLLTHNGRSFNVVVDPTNLEDGLHYYEIYGI 715 (1377)
Q Consensus 669 v~l~~-~~~~wv~vP~~~~l~~~~~~~~V~VDp~~L~~G~h~~~v~~~ 715 (1377)
+-+.+ ..+.|+.++......|.+..+.+.+ |..|++|.|+.+|+-.
T Consensus 40 v~l~~~~~g~~~~v~~~~i~~N~ps~l~~~l-Pa~L~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 40 VFLVSDDEGTETKVPCSSIVRNKPSRLIFIL-PADLAAGEYTLEVRTQ 86 (102)
T ss_pred EEEEcCCCCceEEecHHHeEeCCCcEEEEEC-cCccCceEEEEEEEEE
Confidence 33434 4556888888777778888888887 7779999999999874
Done!