Query 000646
Match_columns 1376
No_of_seqs 321 out of 382
Neff 5.6
Searched_HMMs 46136
Date Mon Apr 1 21:21:16 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 2.3E-72 4.9E-77 733.9 118.3 927 115-1165 835-1916(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 2.6E-63 5.6E-68 633.3 1.5 734 343-1164 2-857 (859)
3 TIGR00606 rad50 rad50. This fa 100.0 1.1E-26 2.4E-31 311.3 99.7 844 252-1295 109-1015(1311)
4 KOG0161 Myosin class II heavy 100.0 3.4E-18 7.3E-23 227.2 131.5 1003 140-1290 839-1918(1930)
5 KOG4674 Uncharacterized conser 99.9 1.3E-12 2.9E-17 171.9 129.8 284 823-1139 910-1197(1822)
6 KOG0962 DNA repair protein RAD 99.9 1E-15 2.2E-20 195.7 94.8 241 1022-1291 762-1035(1294)
7 TIGR00606 rad50 rad50. This fa 99.9 2.8E-13 6E-18 183.1 110.7 482 663-1188 573-1091(1311)
8 KOG4674 Uncharacterized conser 99.9 5.6E-11 1.2E-15 157.0 136.6 190 803-997 989-1199(1822)
9 TIGR02168 SMC_prok_B chromosom 99.8 5.9E-10 1.3E-14 149.2 94.3 102 834-935 672-773 (1179)
10 TIGR02168 SMC_prok_B chromosom 99.8 2.9E-10 6.2E-15 152.2 91.1 63 979-1048 965-1027(1179)
11 PF01576 Myosin_tail_1: Myosin 99.8 1E-19 2.2E-24 234.2 0.7 555 332-946 188-787 (859)
12 TIGR02169 SMC_prok_A chromosom 99.7 3E-09 6.6E-14 142.7 99.1 56 833-888 675-730 (1164)
13 COG1196 Smc Chromosome segrega 99.7 1.5E-09 3.2E-14 145.9 90.4 318 281-601 147-492 (1163)
14 TIGR02169 SMC_prok_A chromosom 99.7 1.4E-09 3E-14 146.0 88.9 35 965-999 979-1013(1164)
15 COG1196 Smc Chromosome segrega 99.7 6.1E-08 1.3E-12 130.5 95.8 114 833-946 668-781 (1163)
16 PF10174 Cast: RIM-binding pro 99.7 3.4E-08 7.3E-13 125.5 84.0 121 312-434 41-161 (775)
17 PRK02224 chromosome segregatio 99.6 3E-09 6.4E-14 139.6 73.0 52 382-433 253-304 (880)
18 PRK02224 chromosome segregatio 99.6 1.3E-08 2.9E-13 133.5 73.2 99 832-931 516-614 (880)
19 PRK03918 chromosome segregatio 99.5 4E-07 8.7E-12 119.6 74.4 56 242-297 160-215 (880)
20 PF10174 Cast: RIM-binding pro 99.5 3.6E-06 7.8E-11 107.5 84.1 225 532-763 181-411 (775)
21 PRK03918 chromosome segregatio 99.4 6.6E-06 1.4E-10 108.3 73.1 11 76-86 81-91 (880)
22 KOG0996 Structural maintenance 99.2 0.00013 2.7E-09 94.0 75.9 265 179-459 332-607 (1293)
23 KOG0996 Structural maintenance 99.2 0.00013 2.8E-09 93.9 80.2 127 978-1121 884-1010(1293)
24 PF12128 DUF3584: Protein of u 99.1 0.00055 1.2E-08 93.3 91.8 72 345-419 281-353 (1201)
25 PRK01156 chromosome segregatio 99.0 0.00051 1.1E-08 91.1 70.9 8 78-85 79-86 (895)
26 PRK01156 chromosome segregatio 99.0 0.00072 1.5E-08 89.8 73.4 23 771-793 586-608 (895)
27 KOG0933 Structural maintenance 98.8 0.0025 5.4E-08 81.4 78.4 199 714-928 682-883 (1174)
28 PF12128 DUF3584: Protein of u 98.7 0.0066 1.4E-07 83.1 85.0 218 711-940 623-861 (1201)
29 KOG0250 DNA repair protein RAD 98.5 0.014 2.9E-07 76.2 67.1 127 454-591 338-465 (1074)
30 KOG0933 Structural maintenance 98.5 0.012 2.7E-07 75.5 68.3 210 360-579 678-895 (1174)
31 PF05701 WEMBL: Weak chloropla 98.5 0.012 2.6E-07 73.8 61.8 83 706-791 362-444 (522)
32 KOG4673 Transcription factor T 98.5 0.012 2.6E-07 72.6 60.0 292 453-792 346-657 (961)
33 KOG0976 Rho/Rac1-interacting s 98.4 0.016 3.5E-07 72.4 53.2 219 322-557 83-307 (1265)
34 KOG0964 Structural maintenance 98.4 0.022 4.9E-07 72.9 76.1 106 824-946 666-771 (1200)
35 PF00261 Tropomyosin: Tropomyo 98.4 0.00044 9.5E-09 78.1 30.2 215 542-763 2-216 (237)
36 KOG4673 Transcription factor T 98.4 0.022 4.7E-07 70.4 57.4 72 475-549 577-659 (961)
37 PF00261 Tropomyosin: Tropomyo 98.3 0.00047 1E-08 77.8 29.1 213 377-610 5-217 (237)
38 PRK04863 mukB cell division pr 98.2 0.11 2.3E-06 72.2 99.6 107 838-946 991-1097(1486)
39 PRK04778 septation ring format 98.2 0.056 1.2E-06 68.7 50.5 113 388-517 99-216 (569)
40 KOG0977 Nuclear envelope prote 98.2 0.0052 1.1E-07 75.9 35.9 232 335-579 96-334 (546)
41 PF05701 WEMBL: Weak chloropla 98.2 0.062 1.3E-06 67.5 60.0 155 382-546 29-191 (522)
42 PRK04863 mukB cell division pr 98.1 0.14 2.9E-06 71.2 103.1 130 706-855 989-1118(1486)
43 KOG0977 Nuclear envelope prote 98.1 0.0078 1.7E-07 74.4 36.0 129 454-593 93-221 (546)
44 PRK04778 septation ring format 98.1 0.071 1.5E-06 67.8 51.1 119 303-431 105-228 (569)
45 PF05483 SCP-1: Synaptonemal c 98.1 0.063 1.4E-06 67.0 89.8 136 772-921 464-599 (786)
46 PF07888 CALCOCO1: Calcium bin 98.1 0.066 1.4E-06 66.5 44.7 54 539-592 190-243 (546)
47 PF00038 Filament: Intermediat 98.1 0.018 4E-07 67.2 37.3 77 516-592 64-140 (312)
48 PF07888 CALCOCO1: Calcium bin 98.1 0.073 1.6E-06 66.2 43.2 29 808-836 375-403 (546)
49 PF00038 Filament: Intermediat 98.0 0.029 6.3E-07 65.6 35.9 104 498-601 3-114 (312)
50 KOG4643 Uncharacterized coiled 98.0 0.16 3.5E-06 65.7 47.8 170 772-943 408-591 (1195)
51 PF07111 HCR: Alpha helical co 98.0 0.13 2.9E-06 64.6 68.5 149 816-997 430-589 (739)
52 KOG0962 DNA repair protein RAD 97.9 0.27 5.9E-06 66.1 100.8 174 248-438 104-313 (1294)
53 PF05483 SCP-1: Synaptonemal c 97.9 0.18 3.9E-06 63.2 85.7 178 741-946 496-673 (786)
54 PF05557 MAD: Mitotic checkpoi 97.8 0.0001 2.3E-09 95.3 12.6 39 1099-1137 603-641 (722)
55 KOG0250 DNA repair protein RAD 97.8 0.34 7.3E-06 63.9 64.0 35 769-803 440-474 (1074)
56 KOG0612 Rho-associated, coiled 97.7 0.41 8.8E-06 63.5 42.9 155 385-560 492-649 (1317)
57 KOG0994 Extracellular matrix g 97.7 0.38 8.3E-06 62.9 55.3 66 850-915 1419-1484(1758)
58 PF05557 MAD: Mitotic checkpoi 97.7 6.9E-05 1.5E-09 97.0 8.1 54 508-561 159-212 (722)
59 KOG0994 Extracellular matrix g 97.7 0.49 1.1E-05 62.0 54.0 59 404-462 1507-1565(1758)
60 PF15070 GOLGA2L5: Putative go 97.6 0.44 9.6E-06 60.9 46.4 178 812-996 238-445 (617)
61 KOG4643 Uncharacterized coiled 97.5 0.66 1.4E-05 60.4 51.7 157 460-616 274-448 (1195)
62 KOG1029 Endocytic adaptor prot 97.5 0.32 7E-06 61.4 35.3 138 470-607 360-503 (1118)
63 KOG0964 Structural maintenance 97.4 0.91 2E-05 59.1 84.2 186 660-859 678-874 (1200)
64 PHA02562 46 endonuclease subun 97.4 0.054 1.2E-06 68.2 28.0 56 388-443 214-269 (562)
65 COG0419 SbcC ATPase involved i 97.4 1.3 2.8E-05 59.7 81.6 140 454-594 299-442 (908)
66 KOG0976 Rho/Rac1-interacting s 97.3 0.95 2.1E-05 57.5 66.1 389 502-939 162-584 (1265)
67 PF05622 HOOK: HOOK protein; 97.3 5.2E-05 1.1E-09 97.9 0.0 60 832-891 363-422 (713)
68 PRK11637 AmiB activator; Provi 97.3 0.13 2.8E-06 63.1 28.7 84 342-432 44-127 (428)
69 KOG0978 E3 ubiquitin ligase in 97.3 1.2 2.6E-05 57.1 62.1 90 1031-1131 534-623 (698)
70 TIGR03185 DNA_S_dndD DNA sulfu 97.2 0.88 1.9E-05 59.0 36.4 73 1047-1121 389-461 (650)
71 PF09728 Taxilin: Myosin-like 97.1 0.95 2.1E-05 53.5 38.6 261 655-924 45-308 (309)
72 PRK11637 AmiB activator; Provi 97.1 0.38 8.2E-06 59.2 29.6 12 386-397 102-113 (428)
73 PF05622 HOOK: HOOK protein; 97.1 0.00035 7.6E-09 90.4 3.6 185 715-921 458-648 (713)
74 PF06160 EzrA: Septation ring 97.0 1.8 3.9E-05 55.2 56.6 149 832-997 379-528 (560)
75 PF09728 Taxilin: Myosin-like 96.9 1.6 3.4E-05 51.7 38.2 95 650-744 213-307 (309)
76 COG0419 SbcC ATPase involved i 96.9 3.5 7.6E-05 55.6 75.3 17 857-873 723-739 (908)
77 PF13514 AAA_27: AAA domain 96.8 4.2 9.2E-05 56.0 87.7 41 968-1008 732-772 (1111)
78 COG1340 Uncharacterized archae 96.8 1.6 3.4E-05 50.9 36.2 66 348-413 30-95 (294)
79 PF09726 Macoilin: Transmembra 96.8 0.99 2.1E-05 58.7 30.8 112 644-755 543-654 (697)
80 PF06160 EzrA: Septation ring 96.6 3.6 7.8E-05 52.6 59.2 168 303-506 101-273 (560)
81 PF13514 AAA_27: AAA domain 96.6 5.9 0.00013 54.7 88.9 37 853-889 550-586 (1111)
82 PF15070 GOLGA2L5: Putative go 96.5 4.3 9.3E-05 52.3 50.2 64 496-559 164-227 (617)
83 PF12718 Tropomyosin_1: Tropom 96.5 0.25 5.3E-06 52.1 18.9 101 491-595 6-106 (143)
84 PF09726 Macoilin: Transmembra 96.4 0.89 1.9E-05 59.1 27.2 60 472-531 461-520 (697)
85 PF15619 Lebercilin: Ciliary p 96.4 0.71 1.5E-05 51.0 22.8 66 373-438 12-77 (194)
86 KOG0612 Rho-associated, coiled 96.4 6.4 0.00014 53.0 63.7 139 778-922 699-838 (1317)
87 KOG0946 ER-Golgi vesicle-tethe 96.3 2 4.4E-05 55.2 28.3 96 315-414 662-757 (970)
88 KOG1029 Endocytic adaptor prot 96.3 5.6 0.00012 51.0 34.5 31 503-533 321-351 (1118)
89 KOG0963 Transcription factor/C 96.3 5.3 0.00012 50.4 39.9 79 912-998 62-140 (629)
90 KOG0978 E3 ubiquitin ligase in 96.2 6.5 0.00014 50.8 68.7 94 814-911 551-644 (698)
91 KOG0999 Microtubule-associated 96.2 5.3 0.00012 49.5 73.4 54 927-995 405-458 (772)
92 PF12718 Tropomyosin_1: Tropom 96.2 0.42 9.2E-06 50.3 18.4 96 502-601 3-98 (143)
93 PF05667 DUF812: Protein of un 95.9 4.9 0.00011 51.5 29.8 47 896-942 343-389 (594)
94 COG1579 Zn-ribbon protein, pos 95.9 0.8 1.7E-05 52.0 20.4 123 311-438 18-140 (239)
95 KOG0995 Centromere-associated 95.9 7.7 0.00017 48.7 40.4 108 311-422 260-367 (581)
96 COG1340 Uncharacterized archae 95.8 5.2 0.00011 46.7 36.9 67 527-593 13-79 (294)
97 PF05667 DUF812: Protein of un 95.7 9.7 0.00021 49.0 33.2 56 382-437 323-378 (594)
98 PF09730 BicD: Microtubule-ass 95.7 11 0.00023 49.4 61.7 101 770-873 357-460 (717)
99 PF15619 Lebercilin: Ciliary p 95.6 4.8 0.0001 44.7 25.2 82 512-593 11-92 (194)
100 COG1579 Zn-ribbon protein, pos 95.3 2 4.2E-05 49.0 20.7 102 1022-1136 32-133 (239)
101 KOG1003 Actin filament-coating 94.9 7.5 0.00016 42.8 26.8 69 533-601 3-71 (205)
102 KOG0018 Structural maintenance 94.3 28 0.0006 46.8 67.5 174 510-695 656-835 (1141)
103 PF08317 Spc7: Spc7 kinetochor 94.3 9.1 0.0002 45.6 23.9 149 313-470 145-293 (325)
104 TIGR03185 DNA_S_dndD DNA sulfu 94.2 25 0.00055 45.8 34.9 73 506-578 391-465 (650)
105 PF13851 GAS: Growth-arrest sp 94.2 8.6 0.00019 42.9 21.9 150 1022-1203 28-177 (201)
106 KOG0018 Structural maintenance 94.2 30 0.00065 46.5 75.1 90 832-922 807-897 (1141)
107 KOG1003 Actin filament-coating 94.1 11 0.00025 41.5 26.2 198 654-869 5-202 (205)
108 PF04849 HAP1_N: HAP1 N-termin 94.0 17 0.00036 43.0 25.5 203 516-749 86-302 (306)
109 KOG4593 Mitotic checkpoint pro 93.9 27 0.00058 45.0 63.8 59 705-763 457-515 (716)
110 PF09730 BicD: Microtubule-ass 93.9 29 0.00064 45.5 62.7 28 1217-1244 632-659 (717)
111 KOG0946 ER-Golgi vesicle-tethe 93.8 30 0.00064 45.3 30.9 89 442-530 628-716 (970)
112 KOG0995 Centromere-associated 93.4 29 0.00064 43.8 44.3 124 704-844 427-554 (581)
113 COG4942 Membrane-bound metallo 93.3 26 0.00057 43.0 29.6 60 377-436 49-108 (420)
114 PRK09039 hypothetical protein; 93.2 6.1 0.00013 47.5 20.0 113 483-595 65-177 (343)
115 KOG1937 Uncharacterized conser 93.2 27 0.00058 42.9 30.8 171 427-601 246-428 (521)
116 KOG0963 Transcription factor/C 93.2 33 0.00071 43.8 46.9 239 339-601 16-267 (629)
117 PRK09039 hypothetical protein; 93.0 4.8 0.0001 48.4 18.6 62 483-544 44-105 (343)
118 PF09789 DUF2353: Uncharacteri 92.8 21 0.00046 42.5 23.0 150 450-601 65-221 (319)
119 PF14662 CCDC155: Coiled-coil 92.7 19 0.00041 39.8 26.2 20 676-695 125-144 (193)
120 COG4942 Membrane-bound metallo 92.6 33 0.00071 42.3 30.4 45 701-745 195-239 (420)
121 PRK11281 hypothetical protein; 92.4 60 0.0013 44.9 43.7 125 905-1036 124-249 (1113)
122 COG4372 Uncharacterized protei 92.4 31 0.00068 41.5 28.0 81 390-470 84-164 (499)
123 COG3883 Uncharacterized protei 92.2 27 0.00059 40.5 28.6 54 539-592 43-96 (265)
124 PF15450 DUF4631: Domain of un 92.2 40 0.00086 42.3 54.8 121 816-946 150-281 (531)
125 PF10473 CENP-F_leu_zip: Leuci 92.1 18 0.0004 38.2 20.4 95 650-744 14-108 (140)
126 PF15450 DUF4631: Domain of un 91.5 46 0.001 41.8 57.1 105 407-517 91-211 (531)
127 PF06008 Laminin_I: Laminin Do 91.5 31 0.00068 39.8 29.4 170 968-1146 34-211 (264)
128 KOG4593 Mitotic checkpoint pro 91.4 55 0.0012 42.4 63.6 82 805-886 361-445 (716)
129 PF14662 CCDC155: Coiled-coil 91.2 28 0.0006 38.6 24.6 55 528-582 131-185 (193)
130 PF14915 CCDC144C: CCDC144C pr 90.8 40 0.00087 39.6 39.0 62 544-605 182-243 (305)
131 PF15066 CAGE1: Cancer-associa 90.5 53 0.0012 40.6 23.8 150 1089-1284 356-505 (527)
132 PF05911 DUF869: Plant protein 90.1 80 0.0017 42.1 59.0 123 452-578 168-309 (769)
133 PF08614 ATG16: Autophagy prot 90.0 2.7 5.9E-05 46.3 11.4 112 490-601 72-183 (194)
134 PF06008 Laminin_I: Laminin Do 90.0 43 0.00093 38.7 30.7 68 666-740 184-251 (264)
135 TIGR03007 pepcterm_ChnLen poly 89.9 59 0.0013 40.8 24.6 27 1047-1073 159-185 (498)
136 PF09755 DUF2046: Uncharacteri 89.5 52 0.0011 39.0 34.7 264 830-1160 25-294 (310)
137 PF10473 CENP-F_leu_zip: Leuci 89.5 32 0.00069 36.5 20.2 50 688-737 66-115 (140)
138 PF09787 Golgin_A5: Golgin sub 88.9 79 0.0017 40.2 31.6 214 897-1145 150-380 (511)
139 PF13870 DUF4201: Domain of un 88.6 40 0.00087 36.6 20.9 126 338-473 42-172 (177)
140 COG4477 EzrA Negative regulato 88.4 81 0.0018 39.9 44.9 154 771-928 353-528 (570)
141 PRK11281 hypothetical protein; 88.1 1.3E+02 0.0028 41.9 38.3 89 832-920 156-252 (1113)
142 PF13851 GAS: Growth-arrest sp 88.0 50 0.0011 36.9 23.3 139 650-795 31-173 (201)
143 PF14915 CCDC144C: CCDC144C pr 87.9 64 0.0014 38.0 39.8 35 380-414 56-90 (305)
144 PLN02939 transferase, transfer 87.6 58 0.0013 44.2 22.7 221 835-1140 166-396 (977)
145 TIGR01005 eps_transp_fam exopo 87.2 1E+02 0.0022 40.9 25.2 43 1148-1190 352-394 (754)
146 KOG0999 Microtubule-associated 87.2 94 0.002 39.2 57.8 126 476-601 48-174 (772)
147 PF08317 Spc7: Spc7 kinetochor 87.2 74 0.0016 38.0 29.2 25 555-579 75-99 (325)
148 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.1 41 0.00089 35.0 18.8 33 767-799 93-125 (132)
149 PF05010 TACC: Transforming ac 86.9 59 0.0013 36.6 27.5 13 585-597 71-83 (207)
150 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.9 42 0.00091 34.9 18.6 123 1086-1243 8-130 (132)
151 PF05010 TACC: Transforming ac 86.6 61 0.0013 36.5 28.1 41 723-763 147-187 (207)
152 PF00769 ERM: Ezrin/radixin/mo 86.0 22 0.00047 41.0 15.8 104 830-933 10-113 (246)
153 PF15066 CAGE1: Cancer-associa 86.0 1E+02 0.0022 38.4 24.2 60 1077-1136 386-445 (527)
154 PF05911 DUF869: Plant protein 85.6 1.4E+02 0.0031 39.8 58.7 49 712-760 261-309 (769)
155 PF06705 SF-assemblin: SF-asse 85.6 74 0.0016 36.5 25.6 175 767-946 29-213 (247)
156 PF12325 TMF_TATA_bd: TATA ele 84.6 25 0.00055 36.2 13.8 45 1077-1121 12-56 (120)
157 PF04849 HAP1_N: HAP1 N-termin 84.2 99 0.0022 36.8 27.2 67 696-762 228-294 (306)
158 KOG1850 Myosin-like coiled-coi 83.2 1.1E+02 0.0023 36.4 35.9 113 650-762 219-331 (391)
159 TIGR01005 eps_transp_fam exopo 82.9 1.8E+02 0.0039 38.8 24.6 27 513-539 194-220 (754)
160 PF08614 ATG16: Autophagy prot 82.7 8.6 0.00019 42.5 10.4 100 511-610 72-171 (194)
161 TIGR01843 type_I_hlyD type I s 82.4 1.2E+02 0.0027 36.6 22.8 28 566-593 141-168 (423)
162 PF09787 Golgin_A5: Golgin sub 82.4 1.5E+02 0.0033 37.7 37.1 30 899-928 106-135 (511)
163 TIGR03017 EpsF chain length de 81.9 1.4E+02 0.003 36.8 23.6 14 1357-1370 399-412 (444)
164 KOG0804 Cytoplasmic Zn-finger 81.7 42 0.0009 41.4 16.0 114 478-601 339-453 (493)
165 PF06705 SF-assemblin: SF-asse 81.6 1.1E+02 0.0023 35.2 30.2 148 772-935 5-154 (247)
166 COG1842 PspA Phage shock prote 81.3 1.1E+02 0.0023 35.1 23.6 186 309-501 23-220 (225)
167 smart00787 Spc7 Spc7 kinetocho 81.0 1.3E+02 0.0029 36.0 22.4 121 313-436 140-260 (312)
168 PF09304 Cortex-I_coil: Cortex 80.8 16 0.00035 36.8 10.2 71 863-935 12-82 (107)
169 PF14073 Cep57_CLD: Centrosome 80.5 98 0.0021 34.1 18.5 104 829-932 61-164 (178)
170 TIGR02977 phageshock_pspA phag 80.3 1.1E+02 0.0024 34.6 23.2 122 313-436 27-148 (219)
171 PF04912 Dynamitin: Dynamitin 79.7 1.6E+02 0.0035 36.1 23.2 18 980-997 210-227 (388)
172 PRK11519 tyrosine kinase; Prov 79.6 1.3E+02 0.0028 39.9 21.4 91 1167-1275 269-364 (719)
173 PRK09841 cryptic autophosphory 79.0 1E+02 0.0022 41.0 20.0 90 1167-1275 269-364 (726)
174 PRK10929 putative mechanosensi 78.7 2.9E+02 0.0063 38.6 42.2 15 474-488 147-161 (1109)
175 KOG4809 Rab6 GTPase-interactin 78.7 2E+02 0.0043 36.6 38.2 76 506-581 331-406 (654)
176 PF06818 Fez1: Fez1; InterPro 78.1 1.2E+02 0.0027 34.0 20.1 182 324-523 10-201 (202)
177 KOG0249 LAR-interacting protei 77.5 2.4E+02 0.0053 37.0 24.3 130 770-915 110-257 (916)
178 PF10168 Nup88: Nuclear pore c 77.5 64 0.0014 42.7 17.3 100 106-212 567-670 (717)
179 PF12325 TMF_TATA_bd: TATA ele 77.1 56 0.0012 33.8 13.3 27 454-480 69-95 (120)
180 PF00769 ERM: Ezrin/radixin/mo 77.1 57 0.0012 37.6 14.9 90 837-933 38-127 (246)
181 COG5185 HEC1 Protein involved 77.0 2E+02 0.0044 35.9 38.1 147 665-815 262-418 (622)
182 PF15035 Rootletin: Ciliary ro 76.4 1.3E+02 0.0028 33.3 17.1 157 1086-1267 7-176 (182)
183 PF10481 CENP-F_N: Cenp-F N-te 75.5 68 0.0015 37.3 14.5 94 476-569 16-109 (307)
184 PF12795 MscS_porin: Mechanose 75.5 1.5E+02 0.0034 33.7 21.4 57 509-565 81-137 (240)
185 COG4026 Uncharacterized protei 75.4 21 0.00046 40.0 10.2 78 358-435 134-211 (290)
186 PF10168 Nup88: Nuclear pore c 75.3 2.4E+02 0.0051 37.7 21.5 33 1255-1287 683-715 (717)
187 PRK10929 putative mechanosensi 75.1 3.6E+02 0.0078 37.8 41.0 24 874-897 493-516 (1109)
188 PF09789 DUF2353: Uncharacteri 74.0 2.1E+02 0.0045 34.5 26.2 76 1205-1288 148-227 (319)
189 PF04912 Dynamitin: Dynamitin 73.5 2.3E+02 0.005 34.8 21.6 34 895-928 87-120 (388)
190 smart00787 Spc7 Spc7 kinetocho 73.3 2.1E+02 0.0046 34.3 28.6 57 683-739 206-262 (312)
191 TIGR03017 EpsF chain length de 72.3 2.5E+02 0.0054 34.7 25.7 29 974-1002 173-201 (444)
192 PF15294 Leu_zip: Leucine zipp 72.2 1.1E+02 0.0024 35.9 15.6 120 1084-1212 128-251 (278)
193 TIGR00634 recN DNA repair prot 71.9 3E+02 0.0065 35.5 23.3 48 387-434 168-221 (563)
194 PF04111 APG6: Autophagy prote 71.4 32 0.0007 41.0 11.5 91 846-936 43-133 (314)
195 TIGR01010 BexC_CtrB_KpsE polys 71.1 2.4E+02 0.0052 34.0 21.3 88 1167-1273 172-265 (362)
196 PF04012 PspA_IM30: PspA/IM30 70.6 1.8E+02 0.004 32.5 23.1 118 313-432 26-143 (221)
197 COG1842 PspA Phage shock prote 70.0 2.1E+02 0.0045 32.8 20.5 146 770-920 22-184 (225)
198 PF04012 PspA_IM30: PspA/IM30 70.0 1.9E+02 0.0041 32.4 20.3 55 422-476 23-77 (221)
199 PF06005 DUF904: Protein of un 69.1 26 0.00056 33.1 7.9 64 862-925 6-69 (72)
200 PRK10698 phage shock protein P 67.3 2.3E+02 0.005 32.3 23.3 122 313-436 27-148 (222)
201 COG5185 HEC1 Protein involved 66.7 3.4E+02 0.0074 34.1 36.3 28 567-594 485-512 (622)
202 PF11559 ADIP: Afadin- and alp 66.0 1.1E+02 0.0024 32.3 13.2 93 1040-1143 57-149 (151)
203 KOG0971 Microtubule-associated 65.2 4.9E+02 0.011 35.3 73.1 114 480-597 433-546 (1243)
204 PF14988 DUF4515: Domain of un 64.1 2.5E+02 0.0055 31.7 24.9 54 1137-1190 50-103 (206)
205 COG3074 Uncharacterized protei 63.7 43 0.00094 31.2 7.9 62 807-889 7-68 (79)
206 PRK10246 exonuclease subunit S 63.5 5.8E+02 0.013 35.6 81.6 50 756-805 754-803 (1047)
207 PF10212 TTKRSYEDQ: Predicted 63.4 1.4E+02 0.003 37.9 14.8 98 334-434 416-513 (518)
208 PF10212 TTKRSYEDQ: Predicted 62.9 4E+02 0.0087 34.0 18.6 108 823-943 405-514 (518)
209 PF10146 zf-C4H2: Zinc finger- 62.2 1.7E+02 0.0037 33.6 14.3 54 376-429 49-102 (230)
210 KOG1899 LAR transmembrane tyro 61.7 4.7E+02 0.01 34.0 19.3 142 329-480 123-265 (861)
211 PF10146 zf-C4H2: Zinc finger- 61.4 2.5E+02 0.0055 32.2 15.6 25 676-700 48-72 (230)
212 KOG4360 Uncharacterized coiled 60.9 3.7E+02 0.0079 34.2 17.4 88 676-763 207-294 (596)
213 PF07106 TBPIP: Tat binding pr 60.6 86 0.0019 33.8 11.3 64 1044-1109 74-137 (169)
214 PF04582 Reo_sigmaC: Reovirus 60.4 13 0.00028 44.2 5.3 96 512-607 55-150 (326)
215 KOG4787 Uncharacterized conser 60.0 3.5E+02 0.0075 34.8 17.1 53 1054-1109 435-487 (852)
216 PF10498 IFT57: Intra-flagella 59.9 3.5E+02 0.0076 33.1 17.2 46 1232-1278 308-356 (359)
217 PF04582 Reo_sigmaC: Reovirus 59.3 17 0.00038 43.2 6.1 70 520-589 84-153 (326)
218 KOG0249 LAR-interacting protei 57.9 5.8E+02 0.013 33.8 19.6 100 473-579 23-129 (916)
219 PRK10246 exonuclease subunit S 55.9 7.6E+02 0.016 34.5 82.9 25 387-411 257-281 (1047)
220 PRK10884 SH3 domain-containing 55.4 1.4E+02 0.0031 33.6 12.1 37 1170-1210 91-127 (206)
221 PF12795 MscS_porin: Mechanose 55.1 3.7E+02 0.008 30.7 21.9 24 502-525 41-64 (240)
222 PF07111 HCR: Alpha helical co 54.9 6.4E+02 0.014 33.4 73.3 103 1084-1190 510-614 (739)
223 PF04111 APG6: Autophagy prote 54.2 2.2E+02 0.0047 34.2 14.1 70 670-739 60-129 (314)
224 TIGR00634 recN DNA repair prot 54.0 6E+02 0.013 32.8 24.9 11 809-819 380-390 (563)
225 KOG1853 LIS1-interacting prote 53.2 4.2E+02 0.0091 30.8 21.2 29 573-601 49-77 (333)
226 COG4477 EzrA Negative regulato 52.5 6.2E+02 0.013 32.5 53.0 90 707-799 102-194 (570)
227 KOG1853 LIS1-interacting prote 52.0 4.4E+02 0.0095 30.6 20.9 38 841-878 135-172 (333)
228 PF05266 DUF724: Protein of un 51.6 3.8E+02 0.0081 30.0 14.5 108 490-601 67-177 (190)
229 PF05266 DUF724: Protein of un 51.6 3.9E+02 0.0084 29.9 17.0 80 355-434 106-185 (190)
230 PF10498 IFT57: Intra-flagella 50.8 3.1E+02 0.0067 33.6 14.8 98 322-422 211-308 (359)
231 KOG4809 Rab6 GTPase-interactin 50.8 6.6E+02 0.014 32.3 30.4 77 534-610 331-407 (654)
232 PF10481 CENP-F_N: Cenp-F N-te 50.7 4.8E+02 0.01 30.7 16.2 35 715-749 94-128 (307)
233 PF06818 Fez1: Fez1; InterPro 50.5 4.2E+02 0.0091 30.0 19.7 18 659-676 155-172 (202)
234 PRK10884 SH3 domain-containing 49.9 2.1E+02 0.0046 32.2 12.4 17 342-358 97-113 (206)
235 PF08826 DMPK_coil: DMPK coile 49.3 1.9E+02 0.0041 26.6 9.6 58 364-421 2-59 (61)
236 PF15397 DUF4618: Domain of un 48.5 5.1E+02 0.011 30.4 27.2 33 1257-1289 186-218 (258)
237 COG4026 Uncharacterized protei 48.3 1.7E+02 0.0037 33.2 11.0 76 846-928 135-210 (290)
238 PF14197 Cep57_CLD_2: Centroso 48.3 94 0.002 29.1 7.8 40 874-920 26-65 (69)
239 PF12329 TMF_DNA_bd: TATA elem 47.4 2.3E+02 0.005 26.8 10.3 43 519-561 11-53 (74)
240 PF07889 DUF1664: Protein of u 46.9 1.6E+02 0.0034 30.9 9.9 78 280-357 41-122 (126)
241 PF11932 DUF3450: Protein of u 46.8 4.8E+02 0.011 30.0 15.1 72 657-728 39-110 (251)
242 KOG0244 Kinesin-like protein [ 46.8 9.3E+02 0.02 32.9 28.8 88 833-922 331-418 (913)
243 PF04728 LPP: Lipoprotein leuc 46.5 1.2E+02 0.0026 27.5 7.7 42 1083-1124 5-46 (56)
244 PF15397 DUF4618: Domain of un 46.0 5.6E+02 0.012 30.1 26.7 156 707-888 65-221 (258)
245 KOG0971 Microtubule-associated 45.8 9.6E+02 0.021 32.8 77.2 96 1167-1290 957-1052(1243)
246 TIGR01000 bacteriocin_acc bact 45.4 7.1E+02 0.015 31.2 23.1 16 481-496 175-190 (457)
247 PF09755 DUF2046: Uncharacteri 45.3 6.2E+02 0.013 30.4 36.5 115 678-795 153-284 (310)
248 PF00901 Orbi_VP5: Orbivirus o 45.0 7.1E+02 0.015 31.7 16.5 139 46-206 58-208 (508)
249 COG2433 Uncharacterized conser 44.4 3.1E+02 0.0066 35.6 13.6 29 566-594 478-506 (652)
250 PF07889 DUF1664: Protein of u 44.1 3.2E+02 0.007 28.6 11.7 60 1126-1185 60-123 (126)
251 TIGR02977 phageshock_pspA phag 42.8 5.4E+02 0.012 29.0 20.1 61 462-522 15-75 (219)
252 PF07106 TBPIP: Tat binding pr 42.5 1.5E+02 0.0033 32.0 9.6 29 340-368 81-109 (169)
253 PF14197 Cep57_CLD_2: Centroso 42.4 2.4E+02 0.0052 26.5 9.5 60 518-577 3-62 (69)
254 PF14282 FlxA: FlxA-like prote 42.0 1.3E+02 0.0028 30.4 8.3 60 1056-1115 19-78 (106)
255 KOG1899 LAR transmembrane tyro 41.1 9.6E+02 0.021 31.4 20.7 35 650-684 221-255 (861)
256 KOG0982 Centrosomal protein Nu 40.8 8.3E+02 0.018 30.6 23.1 213 517-732 219-433 (502)
257 KOG4438 Centromere-associated 40.6 8.3E+02 0.018 30.6 36.0 57 705-763 336-392 (446)
258 COG2433 Uncharacterized conser 40.6 4E+02 0.0087 34.6 13.7 78 332-413 430-507 (652)
259 PF03962 Mnd1: Mnd1 family; I 39.2 5.8E+02 0.013 28.4 14.0 62 1219-1281 104-166 (188)
260 KOG0288 WD40 repeat protein Ti 39.1 2.6E+02 0.0056 34.6 11.3 75 872-946 11-85 (459)
261 COG5336 Uncharacterized protei 39.1 20 0.00043 36.2 2.0 20 1353-1373 48-67 (116)
262 PF11932 DUF3450: Protein of u 38.9 6.1E+02 0.013 29.1 14.4 12 571-582 79-90 (251)
263 PF05278 PEARLI-4: Arabidopsis 38.9 1.9E+02 0.0041 33.9 10.0 81 835-915 182-262 (269)
264 PRK09343 prefoldin subunit bet 38.3 3.8E+02 0.0082 27.7 11.2 34 1257-1290 71-104 (121)
265 PRK04406 hypothetical protein; 38.2 1.9E+02 0.0041 27.6 8.3 34 518-551 9-42 (75)
266 PF15254 CCDC14: Coiled-coil d 37.8 1.2E+03 0.025 31.5 18.7 62 1012-1073 499-560 (861)
267 PF02403 Seryl_tRNA_N: Seryl-t 37.5 4E+02 0.0086 26.4 11.1 68 1214-1283 32-100 (108)
268 PRK15396 murein lipoprotein; P 37.1 1.5E+02 0.0033 28.6 7.4 46 1082-1127 26-71 (78)
269 KOG1937 Uncharacterized conser 36.9 9.6E+02 0.021 30.2 33.7 82 517-599 290-375 (521)
270 PF13805 Pil1: Eisosome compon 36.7 7.3E+02 0.016 29.3 14.3 87 1100-1190 101-190 (271)
271 COG3206 GumC Uncharacterized p 36.7 9.4E+02 0.02 30.1 26.9 34 1157-1190 287-324 (458)
272 PRK11519 tyrosine kinase; Prov 36.5 1E+03 0.022 31.8 17.7 32 970-1001 265-296 (719)
273 TIGR02338 gimC_beta prefoldin, 36.5 4.6E+02 0.01 26.4 12.2 27 711-737 76-102 (110)
274 PF10205 KLRAQ: Predicted coil 36.4 3.3E+02 0.0072 27.6 9.9 66 545-610 2-67 (102)
275 TIGR01069 mutS2 MutS2 family p 36.3 8.5E+02 0.018 32.9 16.9 22 294-315 488-509 (771)
276 PRK10361 DNA recombination pro 36.2 1E+03 0.022 30.4 22.3 36 454-489 82-117 (475)
277 PF14992 TMCO5: TMCO5 family 36.1 8.1E+02 0.018 29.1 15.5 166 976-1185 15-180 (280)
278 PF08826 DMPK_coil: DMPK coile 35.8 3.6E+02 0.0077 24.9 9.7 41 561-601 17-57 (61)
279 PF02050 FliJ: Flagellar FliJ 35.1 4.3E+02 0.0093 25.6 13.7 55 896-950 46-100 (123)
280 PRK09343 prefoldin subunit bet 34.9 5.3E+02 0.011 26.6 14.3 45 1086-1134 5-49 (121)
281 PF04102 SlyX: SlyX; InterPro 34.7 1.7E+02 0.0037 27.2 7.3 31 557-587 20-50 (69)
282 COG3074 Uncharacterized protei 34.5 4.1E+02 0.0088 25.2 9.9 42 554-595 24-65 (79)
283 TIGR02338 gimC_beta prefoldin, 34.2 4.6E+02 0.01 26.4 10.9 33 1257-1289 67-99 (110)
284 PF04645 DUF603: Protein of un 34.1 6.8E+02 0.015 27.6 13.0 53 490-551 73-129 (181)
285 PF04102 SlyX: SlyX; InterPro 34.0 1.7E+02 0.0036 27.3 7.1 49 519-567 3-51 (69)
286 PF08647 BRE1: BRE1 E3 ubiquit 33.6 4.8E+02 0.01 25.8 12.5 75 341-415 6-80 (96)
287 PRK04406 hypothetical protein; 32.7 2.8E+02 0.0061 26.4 8.5 47 539-585 9-55 (75)
288 KOG0239 Kinesin (KAR3 subfamil 32.6 1.2E+03 0.027 31.0 17.0 76 1089-1165 242-317 (670)
289 PF10267 Tmemb_cc2: Predicted 32.5 7.7E+02 0.017 30.7 14.3 24 502-525 247-270 (395)
290 PRK00409 recombination and DNA 32.4 1.4E+03 0.031 30.9 18.1 103 294-398 493-595 (782)
291 KOG2629 Peroxisomal membrane a 32.3 2.6E+02 0.0055 33.2 9.6 75 1219-1294 123-198 (300)
292 PF04899 MbeD_MobD: MbeD/MobD 32.1 4E+02 0.0086 25.2 9.2 34 511-544 19-52 (70)
293 PF02403 Seryl_tRNA_N: Seryl-t 31.1 5.3E+02 0.012 25.5 11.0 47 752-799 10-56 (108)
294 PF03962 Mnd1: Mnd1 family; I 31.0 4.1E+02 0.0089 29.5 10.8 96 1012-1115 67-162 (188)
295 PF15035 Rootletin: Ciliary ro 30.9 7.8E+02 0.017 27.3 16.8 108 336-443 7-130 (182)
296 PF02994 Transposase_22: L1 tr 30.5 1.3E+02 0.0028 36.9 7.4 52 384-435 141-192 (370)
297 COG1382 GimC Prefoldin, chaper 30.3 6.5E+02 0.014 26.3 13.2 42 382-423 8-49 (119)
298 COG1382 GimC Prefoldin, chaper 30.2 5.8E+02 0.012 26.6 10.7 30 1092-1121 74-103 (119)
299 PF10267 Tmemb_cc2: Predicted 30.1 1.1E+03 0.024 29.3 15.1 21 573-593 248-268 (395)
300 COG0497 RecN ATPase involved i 30.0 1.4E+03 0.03 29.9 22.4 117 1155-1290 245-361 (557)
301 PLN02939 transferase, transfer 29.7 1.7E+03 0.037 31.0 29.3 64 725-791 326-395 (977)
302 PF13870 DUF4201: Domain of un 29.5 7.6E+02 0.016 26.8 22.0 13 650-662 156-168 (177)
303 KOG1962 B-cell receptor-associ 29.5 2.9E+02 0.0063 31.5 9.3 41 114-154 147-187 (216)
304 PF08172 CASP_C: CASP C termin 29.5 6.7E+02 0.015 29.2 12.6 59 534-592 79-137 (248)
305 PRK09841 cryptic autophosphory 29.0 1.3E+03 0.028 30.9 16.8 34 968-1001 263-296 (726)
306 PF13908 Shisa: Wnt and FGF in 29.0 38 0.00082 36.9 2.4 22 1352-1373 79-100 (179)
307 PRK10698 phage shock protein P 28.9 9.1E+02 0.02 27.5 23.3 47 1140-1190 88-138 (222)
308 PF04949 Transcrip_act: Transc 28.6 7.8E+02 0.017 26.6 14.8 91 714-804 54-144 (159)
309 PF15372 DUF4600: Domain of un 28.6 3.6E+02 0.0078 28.4 9.1 77 837-915 20-106 (129)
310 PF14073 Cep57_CLD: Centrosome 28.3 8.7E+02 0.019 27.1 20.9 40 503-542 61-100 (178)
311 PRK00295 hypothetical protein; 28.1 3.1E+02 0.0067 25.6 7.8 29 522-550 7-35 (68)
312 KOG3653 Transforming growth fa 28.0 42 0.0009 41.9 2.7 42 1334-1375 137-179 (534)
313 PRK01844 hypothetical protein; 28.0 46 0.00099 31.4 2.3 14 1363-1376 15-28 (72)
314 PF05377 FlaC_arch: Flagella a 27.9 1.9E+02 0.004 26.2 5.9 39 98-136 1-39 (55)
315 PRK10132 hypothetical protein; 27.7 49 0.0011 33.6 2.7 16 1360-1375 92-107 (108)
316 PF10805 DUF2730: Protein of u 27.1 4.7E+02 0.01 26.4 9.5 56 539-594 40-97 (106)
317 PRK02119 hypothetical protein; 27.1 3.5E+02 0.0075 25.7 8.0 31 520-550 9-39 (73)
318 KOG4677 Golgi integral membran 27.1 1.4E+03 0.03 29.0 23.8 252 815-1133 200-469 (554)
319 TIGR03752 conj_TIGR03752 integ 27.1 4.7E+02 0.01 33.1 11.3 82 831-919 58-140 (472)
320 PF15294 Leu_zip: Leucine zipp 26.9 1.1E+03 0.024 27.9 16.2 17 1089-1105 261-277 (278)
321 PRK02119 hypothetical protein; 26.8 3.7E+02 0.0081 25.5 8.2 47 539-585 7-53 (73)
322 PF06120 Phage_HK97_TLTM: Tail 26.6 1.2E+03 0.026 28.1 15.3 19 476-494 46-64 (301)
323 PRK10869 recombination and rep 26.6 1.5E+03 0.033 29.3 25.3 202 1053-1293 154-363 (553)
324 PRK09973 putative outer membra 26.5 2.3E+02 0.0051 27.7 6.8 43 1082-1124 25-67 (85)
325 PF10046 BLOC1_2: Biogenesis o 26.2 6.6E+02 0.014 25.0 12.4 82 508-593 16-97 (99)
326 KOG0979 Structural maintenance 26.1 1.9E+03 0.042 30.4 59.5 107 634-740 250-356 (1072)
327 PF15102 TMEM154: TMEM154 prot 26.0 37 0.0008 36.1 1.6 19 1357-1375 66-84 (146)
328 PF12777 MT: Microtubule-bindi 25.8 1.2E+03 0.027 28.0 23.9 35 334-368 11-45 (344)
329 PRK10404 hypothetical protein; 25.4 59 0.0013 32.6 2.8 16 1360-1375 86-101 (101)
330 PRK04325 hypothetical protein; 25.4 3.6E+02 0.0077 25.6 7.8 47 541-587 9-55 (74)
331 PRK15178 Vi polysaccharide exp 25.3 1.5E+03 0.032 28.7 18.9 24 1167-1190 244-267 (434)
332 PRK00295 hypothetical protein; 25.2 4.4E+02 0.0095 24.6 8.2 45 543-587 7-51 (68)
333 cd00632 Prefoldin_beta Prefold 25.1 6.9E+02 0.015 24.8 12.3 25 718-742 72-96 (105)
334 PRK00736 hypothetical protein; 25.0 3.6E+02 0.0078 25.2 7.6 28 522-549 7-34 (68)
335 PF09738 DUF2051: Double stran 24.8 1.3E+03 0.028 27.8 14.0 20 772-791 226-245 (302)
336 PF04728 LPP: Lipoprotein leuc 24.7 4.8E+02 0.01 23.8 7.9 43 559-601 7-49 (56)
337 cd07588 BAR_Amphiphysin The Bi 24.6 1.1E+03 0.023 26.9 12.9 49 243-291 11-59 (211)
338 PRK02793 phi X174 lysis protei 24.4 3.9E+02 0.0085 25.2 7.8 24 521-544 9-32 (72)
339 TIGR02894 DNA_bind_RsfA transc 24.2 5.6E+02 0.012 28.0 9.8 123 784-924 16-147 (161)
340 PF01920 Prefoldin_2: Prefoldi 24.2 3.5E+02 0.0077 26.3 8.1 103 1168-1300 1-105 (106)
341 KOG0288 WD40 repeat protein Ti 24.2 1.4E+03 0.03 28.7 14.0 95 340-434 8-102 (459)
342 PF10234 Cluap1: Clusterin-ass 24.0 1.2E+03 0.027 27.4 15.0 88 327-414 172-259 (267)
343 PRK15048 methyl-accepting chem 24.0 1.6E+03 0.034 28.6 34.0 19 1142-1161 368-386 (553)
344 PLN03229 acetyl-coenzyme A car 23.8 1.9E+03 0.041 29.6 18.1 25 1220-1244 560-590 (762)
345 PF05957 DUF883: Bacterial pro 23.7 68 0.0015 31.3 2.8 21 1355-1375 74-94 (94)
346 PRK02793 phi X174 lysis protei 23.5 4.3E+02 0.0094 24.9 7.9 45 541-585 8-52 (72)
347 TIGR02231 conserved hypothetic 23.4 5.1E+02 0.011 33.1 11.3 48 388-435 125-172 (525)
348 KOG2991 Splicing regulator [RN 23.3 1.2E+03 0.027 27.2 24.4 66 468-533 90-163 (330)
349 PF15456 Uds1: Up-regulated Du 23.2 8.7E+02 0.019 25.4 12.0 97 846-943 22-122 (124)
350 PF10046 BLOC1_2: Biogenesis o 23.2 7.5E+02 0.016 24.6 11.5 37 1194-1244 28-64 (99)
351 PF11180 DUF2968: Protein of u 23.0 9.3E+02 0.02 27.1 11.4 76 504-579 110-185 (192)
352 KOG1962 B-cell receptor-associ 22.9 5E+02 0.011 29.7 9.6 54 893-946 149-202 (216)
353 PRK00736 hypothetical protein; 22.8 4.7E+02 0.01 24.4 7.9 44 543-586 7-50 (68)
354 KOG2991 Splicing regulator [RN 22.8 1.3E+03 0.028 27.1 22.8 144 437-593 137-302 (330)
355 PF05335 DUF745: Protein of un 22.6 1.1E+03 0.024 26.4 15.0 105 529-633 69-173 (188)
356 PF08647 BRE1: BRE1 E3 ubiquit 22.6 7.6E+02 0.016 24.4 12.1 59 532-590 22-80 (96)
357 KOG4460 Nuclear pore complex, 22.4 1.8E+03 0.039 28.7 15.8 60 630-689 667-731 (741)
358 PF13863 DUF4200: Domain of un 22.3 8.2E+02 0.018 24.7 14.5 94 503-596 15-108 (126)
359 PF04650 YSIRK_signal: YSIRK t 22.3 38 0.00081 26.2 0.6 11 1361-1371 14-24 (27)
360 TIGR03752 conj_TIGR03752 integ 22.2 4.2E+02 0.009 33.6 9.6 80 1022-1111 60-139 (472)
361 PF10205 KLRAQ: Predicted coil 22.1 8.5E+02 0.018 24.8 11.2 66 353-418 6-71 (102)
362 PF10458 Val_tRNA-synt_C: Valy 22.1 3.6E+02 0.0079 24.7 7.1 56 1221-1276 7-65 (66)
363 PF07271 Cytadhesin_P30: Cytad 21.7 51 0.0011 38.2 1.7 28 1346-1373 64-91 (279)
364 PF14712 Snapin_Pallidin: Snap 21.6 7.3E+02 0.016 23.9 11.1 74 521-595 15-90 (92)
365 PRK00846 hypothetical protein; 21.5 5.6E+02 0.012 24.8 8.2 32 519-550 12-43 (77)
366 PRK13734 conjugal transfer pil 21.5 53 0.0011 33.2 1.6 17 1354-1370 97-113 (120)
367 PRK00846 hypothetical protein; 21.4 4.7E+02 0.01 25.3 7.7 49 540-588 12-60 (77)
368 PF06810 Phage_GP20: Phage min 21.4 6.9E+02 0.015 26.9 10.1 28 514-541 21-48 (155)
369 PF02841 GBP_C: Guanylate-bind 21.3 9.8E+02 0.021 28.2 12.3 106 107-212 186-297 (297)
370 TIGR01010 BexC_CtrB_KpsE polys 21.0 1.5E+03 0.032 27.3 17.6 25 976-1000 174-198 (362)
371 PF02404 SCF: Stem cell factor 20.9 33 0.00071 39.6 0.0 17 1358-1374 218-234 (273)
372 PF05384 DegS: Sensor protein 20.8 1.1E+03 0.024 25.7 20.5 50 510-559 24-73 (159)
373 PRK01844 hypothetical protein; 20.6 49 0.0011 31.2 1.1 21 1353-1373 1-21 (72)
374 PHA01750 hypothetical protein 20.5 3E+02 0.0065 25.7 5.9 34 1255-1288 40-73 (75)
375 PF09738 DUF2051: Double stran 20.5 1.5E+03 0.033 27.2 13.6 28 659-686 218-245 (302)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.3e-72 Score=733.91 Aligned_cols=927 Identities=26% Similarity=0.347 Sum_probs=843.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000646 115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-------AKRKELAEVK 187 (1376)
Q Consensus 115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~-------~~~~~L~~~k 187 (1376)
+.+++|.++++++..+++++.+.+...++|+..+.++.. +++.|+.+|+++. +++.++...+
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k 903 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK 903 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999 9999999999998 5566666655
Q ss_pred H--------------HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhH
Q 000646 188 E--------------AFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA 253 (1376)
Q Consensus 188 e--------------~~e~~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~ 253 (1376)
. ..++.+..++..++++++.|++|+..+++ .+++ ++| +++|+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~-------- 960 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN-------- 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence 2 22888999999999999999999999999 8888 999 999999
Q ss_pred HhHHHHHHhHHHHHhhhhhhhhhhhh----HHHHHHhhhhhhhHHHHH-hCCCH------HHHHHHHHhhhhHHHhhhhh
Q 000646 254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL 322 (1376)
Q Consensus 254 KtlE~ql~~l~~e~~~~~~~~~~~~k----~ee~ls~~~~eL~~~~e~-lglsK------aiL~~vekkf~~~k~l~k~~ 322 (1376)
++++++..++++|.+++|.++++++ +++++..+.++|+..+++ .+++| ++|++++..|.+.+. .
T Consensus 961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen 961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 9999999999999999999999988 789999999999998888 99988 899999999999999 7
Q ss_pred HHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1376)
Q Consensus 323 ~~el~~~K~----~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~ 398 (1376)
+.++++.++ .+..+++.+..+.....+|..++.+++.++..++.+++++...+..+...|.++.+++.++.++|+.
T Consensus 1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhcc
Q 000646 399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478 (1376)
Q Consensus 399 l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~q 478 (1376)
.+..+.++++.+.||...+..+...+++............+|++. |+..+++++++.+..|++.++++|+
T Consensus 1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999966655555544444444444447789999 9999999999999999999999999
Q ss_pred ch----HHHHHHHHH---hHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000646 479 RN----LELEDIIRA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540 (1376)
Q Consensus 479 k~----~EL~~qi~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLe 540 (1376)
+| .+|.+|+++ .|+.+++.|+.+ ..+...+.+.++.++.++.++.+++.+++++.+.+.++.
T Consensus 1186 ~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~ 1265 (1930)
T KOG0161|consen 1186 KHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLT 1265 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 899999999 899999999988 667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHhhh-HHHH
Q 000646 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDR 605 (1376)
Q Consensus 541 eklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r 605 (1376)
.+..++..++..+.+.+++....+..+......+++++. .+...++.+..+++.+++++++ .+++
T Consensus 1266 ~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~ 1345 (1930)
T KOG0161|consen 1266 AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAK 1345 (1930)
T ss_pred HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888 6778999999999999999999 7888
Q ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH-------
Q 000646 606 ANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE------- 652 (1376)
Q Consensus 606 ak~~rqrs~eLeell~~~kskLEe~~~~-leeLEe~------------------------LE~~K~Rlq-ELE------- 652 (1376)
.+..++.+....+ +..|+.++++.... ++++++. ++..+.+++ +++
T Consensus 1346 ~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1346 NELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877777 77888887765543 4455542 555555543 222
Q ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Q 000646 653 ---EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELT 708 (1376)
Q Consensus 653 ---eqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek---------------------~reL~ 708 (1376)
..++.++++++.|+..+++|.....++..+++......+..++.+...... +.++.
T Consensus 1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999998887777766633333322 22444
Q ss_pred HHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 000646 709 ESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKS 776 (1376)
Q Consensus 709 eqleel-------ek~k~~LE~EieElkeqLeElE~~Le-----~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~ 776 (1376)
.+++++ +..++.++.++.+++.+|.|++..++ .+|.++++.+.+.+ ++++|+.+ ++++++++++
T Consensus 1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEELRKN 1580 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHHHHH
Confidence 444444 67789999999999999999999876 88999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000646 777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA- 852 (1376)
Q Consensus 777 ~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~- 852 (1376)
|+++|++++++|+++++.++++. +.+||||+||++ +++++|+..++++ |+|++++.||++||.++++++
T Consensus 1581 ~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~~~~ 1653 (1930)
T KOG0161|consen 1581 LQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELEDAQR 1653 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999 9999999999999 999999999999999999877
Q ss_pred -------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHH
Q 000646 853 -------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLD 919 (1376)
Q Consensus 853 -------------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~ 919 (1376)
+|+..+.+|++++...+.+++|++++++.+++|+.+.++.++++|+.++..|++|+++|..|+++|+
T Consensus 1654 ~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1654 AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 000646 920 SAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE 999 (1376)
Q Consensus 920 ~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~ 999 (1376)
+++++++.+.+|.+++..+++++++++ +.++.++++.+++++ .|+++||||+.||+++|+.+..
T Consensus 1734 e~~~~~~~~~Er~kka~~~a~~~~~el------------~~Eq~~~~~le~~k~--~LE~~~kdLq~rL~e~E~~a~~-- 1797 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEEL------------RKEQETSQKLERLKK--SLERQVKDLQLRLDEAEQAALK-- 1797 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhh--
Confidence 999999999999999999999999999 999999999999999 9999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccc
Q 000646 1000 EQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEK 1079 (1376)
Q Consensus 1000 ~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~ 1079 (1376)
+|++ .+..++++|..|+.. ++.|-+++..++ +.++.+++.|++++.| ++.
T Consensus 1798 ----------~~k~--------~i~~Learir~LE~~---l~~E~~~~~e~~----k~~rk~er~vkEl~~q-----~ee 1847 (1930)
T KOG0161|consen 1798 ----------GGKK--------QIAKLEARIRELESE---LEGEQRRKAEAI----KGLRKKERRVKELQFQ-----VEE 1847 (1930)
T ss_pred ----------ccHH--------HHHHHHHHHHHHHHH---HhHhhhhhHHHh----HHHHHHHHHHHHHHHH-----hhh
Confidence 9999 999999999999999 999999999999 9999999999999999 445
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000646 1080 DETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIES 1159 (1376)
Q Consensus 1080 ~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~ 1159 (1376)
++ + +...+++.+.+++.++..|++|+++++...++.+.+|++.+++++++. +..|+|+++|..
T Consensus 1848 d~--k----~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~-----------erad~~e~~~~~ 1910 (1930)
T KOG0161|consen 1848 DK--K----NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAE-----------ERADTAESELNK 1910 (1930)
T ss_pred hh--h----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 55 4 788999999999999999999999999999999999999999999999 889999999999
Q ss_pred HHHHHH
Q 000646 1160 LKAQAA 1165 (1376)
Q Consensus 1160 lk~~~~ 1165 (1376)
+|....
T Consensus 1911 lr~k~r 1916 (1930)
T KOG0161|consen 1911 LRSKLR 1916 (1930)
T ss_pred HHHHHH
Confidence 998764
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=2.6e-63 Score=633.35 Aligned_cols=734 Identities=26% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHh
Q 000646 343 LDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKE 422 (1376)
Q Consensus 343 le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e 422 (1376)
+.+...+|...|.+++++|..+..++++++..+..+.+.|.++.++|.+|..+|+..+..+.++++.+.||. .+|.+
T Consensus 2 ~~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~---~ELe~ 78 (859)
T PF01576_consen 2 LERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLS---EELEE 78 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999999 67777
Q ss_pred hhHHHHHHHhhhHh---hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch----HHHHHHHHH---hHH
Q 000646 423 LCSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDIIRA---SNE 492 (1376)
Q Consensus 423 ~~eeLEeeL~~~~~---e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~----~EL~~qi~~---~~~ 492 (1376)
....|++..+.+.+ ..+|||+ ||..++|.|++.+..|+++++.+|+|| .+|.+||++ .++
T Consensus 79 l~~~Lee~~~~t~aq~E~~kkrE~----------El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~ 148 (859)
T PF01576_consen 79 LKERLEEAGGATQAQIELNKKREA----------ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKA 148 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhCcHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888776 6699999 999999999999999999999999999 999999999 899
Q ss_pred HHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 493 AAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1376)
Q Consensus 493 ~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele 561 (1376)
++|+.|+.| +.+...+.++++.++.++.++.+++.++.+..+.++++.....++..++..+...+....
T Consensus 149 ~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e 228 (859)
T PF01576_consen 149 KLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAE 228 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHhhh-HHHHhhhhhhhhHHHHHhHHhhhhh
Q 000646 562 DQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDRANMSHQRSIELEDLFQTSHSK 626 (1376)
Q Consensus 562 ~klee~q~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~rak~~rqrs~eLeell~~~ksk 626 (1376)
..+..+......|..++. .+...++.++.+++.+++++++ .+++....++......+ +..|+.+
T Consensus 229 ~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E-l~~~k~K 307 (859)
T PF01576_consen 229 SQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE-LEQWKKK 307 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH-HHHHHHH
Confidence 999999999988888887 6778999999999999999998 67777777777766555 8889988
Q ss_pred hhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH----------HHHHHHHHHHHHHHHhhH
Q 000646 627 LEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE----------EQISKLEKKCEEAEAGSK 670 (1376)
Q Consensus 627 LEe~~~~-leeLEe~------------------------LE~~K~Rlq-ELE----------eqis~LEKK~k~~eqel~ 670 (1376)
|+..... ++.+++. +++.+.++. +++ ..+..+++++..|++.+.
T Consensus 308 ~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~ 387 (859)
T PF01576_consen 308 YEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLA 387 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8865533 5555552 444444443 222 667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH-------HHHHHHHHH
Q 000646 671 QYSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELTESLNA-------AADEKRKLQ 722 (1376)
Q Consensus 671 el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek---------------------~reL~eqlee-------lek~k~~LE 722 (1376)
.|...+..+..+++.+..+++.+.+.+..+... +.+|+.++++ +.+.++.|+
T Consensus 388 e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 388 EWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence 999999999999999998888888844444333 2255555554 377899999
Q ss_pred HHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000646 723 DTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSE 797 (1376)
Q Consensus 723 ~EieElkeqLeElE~~Le-----~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e 797 (1376)
.++.+++.+|.++++.+. .+|+++++.+.+.+ |+++|+.+ +++|++.|++++++|++|+++|+.+++.|+.
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~l~eK---eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~ 543 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERELQEK---EEEFEETRRNHQRQLESLEAELEEERKERAE 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---hhHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999987 89999999999999 99999999 9999999999999999999999999999999
Q ss_pred hhhhHHHhhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Q 000646 798 LESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA--------------GKYALLKE 860 (1376)
Q Consensus 798 ~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~--------------~k~~~l~~ 860 (1376)
++ +.+||||++|++ +++++|+...++. +.+++++.||++||..+++++ +++..|.+
T Consensus 544 ~~----r~kkKLE~~l~eLe~~ld~~n~~~~e~~---k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ 616 (859)
T PF01576_consen 544 AL----REKKKLESDLNELEIQLDHANRANEEAQ---KQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQA 616 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999 9999999999999 999999999999999999977 77889999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHH
Q 000646 861 ELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVT 940 (1376)
Q Consensus 861 Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~ 940 (1376)
|++++...+.+++++++.++++++++.++++.+++.|+.|...+++|+++|.+|+.+|++++++++.+.+|++++..+++
T Consensus 617 elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~ 696 (859)
T PF01576_consen 617 ELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAA 696 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 000646 941 ELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETL 1020 (1376)
Q Consensus 941 ~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 1020 (1376)
+|+++| +.++.++++.+.+++ .|+.+||+|+.||+++|+.+.. +|++
T Consensus 697 ~l~~eL------------~~Eq~~~~~le~~k~--~LE~q~keLq~rl~e~E~~~~~------------~~k~------- 743 (859)
T PF01576_consen 697 QLAEEL------------RQEQDHNQHLEKEKK--ALERQVKELQARLEEAEQSALK------------GGKK------- 743 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc------------cccc-------
Confidence 999999 999999999999999 9999999999999999999888 9999
Q ss_pred HHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH
Q 000646 1021 LKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL 1100 (1376)
Q Consensus 1021 ~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkL 1100 (1376)
.|..++++|.+|+.. ++.|.+.+..+. +.++.++++|+++.++ ++.++ . +..++.|+++++
T Consensus 744 -~i~kLE~ri~eLE~~---Le~E~r~~~~~~----k~~rk~er~~kEl~~q-----~ee~~--k----~~~~~~d~~~kl 804 (859)
T PF01576_consen 744 -QIAKLEARIRELEEE---LESEQRRRAEAQ----KQLRKLERRVKELQFQ-----VEEER--K----NAERLQDLVDKL 804 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHhHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHhhHHHHHHH-----HHhHH--H----HHHHHHHHHHHH
Confidence 999999999999999 999999999999 9999999999999999 33443 3 677999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000646 1101 TSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQA 1164 (1376)
Q Consensus 1101 r~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~ 1164 (1376)
+.+|+.|++|++++++++++.+++|+..+++++++. +..+++.+++..+|+..
T Consensus 805 ~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~-----------e~~~~~e~~l~~lr~~~ 857 (859)
T PF01576_consen 805 QLKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAE-----------ERAEAAERELNKLRAKS 857 (859)
T ss_dssp --------------------------SSSSHHHHHT-----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998 89999999999999764
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-26 Score=311.27 Aligned_cols=844 Identities=15% Similarity=0.189 Sum_probs=482.3
Q ss_pred hHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhH-HHHHhCCCHHHHHHH------------------HHhh
Q 000646 252 SAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISA-IQEELGLSKLQLLDL------------------EQRF 312 (1376)
Q Consensus 252 ~~KtlE~ql~~l~~e~~~~~~~~~~~~k~ee~ls~~~~eL~~-~~e~lglsKaiL~~v------------------ekkf 312 (1376)
+|+++++.+..+ .+|...++++++++++. +|..+||+++++.+| ++.|
T Consensus 109 ~~~~~~~~~~~~-------------~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~Qge~~~~~~~~~~rk~~~ 175 (1311)
T TIGR00606 109 EFKTLEGVITRY-------------KHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKF 175 (1311)
T ss_pred cchhhhhhheec-------------CCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeCCcccccccCChHHHHHHH
Confidence 456777665555 34666788999999998 999999999999987 4555
Q ss_pred -------------hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000646 313 -------------SSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEVNARE 376 (1376)
Q Consensus 313 -------------~~~k~l~k~~~~el~~~K~~~~~lked~~~le---~~~~eL~~~l~~k~~El~~l~~kleee~~~~~ 376 (1376)
++++.+++++..+++.++.++.+++.+++++. ..+..+...+..+..++..+..++ ....
T Consensus 176 d~if~~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei----~~l~ 251 (1311)
T TIGR00606 176 DEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENEL----DPLK 251 (1311)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 89999999999999999999999999999886 888899999999999999998888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHH
Q 000646 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNI-ARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAEL 455 (1376)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i-~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El 455 (1376)
.....++.....|..+...+..++..+......+.+|...+ ..++.++++|...+......+...+. ++
T Consensus 252 ~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~----------~~ 321 (1311)
T TIGR00606 252 NRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKER----------EL 321 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHH----------HH
Confidence 88999999999999999999999999999999999999766 45777777766655554433322211 00
Q ss_pred HHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000646 456 ELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSERE 535 (1376)
Q Consensus 456 ~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~ere 535 (1376)
......+..+...+..+...+..+...+..++.+.....+.
T Consensus 322 ---------------------------------------~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~ 362 (1311)
T TIGR00606 322 ---------------------------------------VDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362 (1311)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111111122222222223333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhhhHHHHh
Q 000646 536 VREFSEKLSQLSTALKEVEEEK-----KQLHDQMNDYKDKITQLELIL----NQSNTRSSELEEELRITKERSAEDEDRA 606 (1376)
Q Consensus 536 i~eLeeklskLq~EL~elE~EL-----eele~klee~q~kIs~LEsqL----k~LqsrireLEEele~L~EeLeE~e~ra 606 (1376)
+..+..-+..+...+.--.... ..+..-++.+...+......+ ..+...+..++..++.+...+...+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~ 442 (1311)
T TIGR00606 363 IRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI 442 (1311)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333221000000 000111111111111111111 1222222233333332222222211111
Q ss_pred hhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHH
Q 000646 607 NMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYS--DKVCELASELE 684 (1376)
Q Consensus 607 k~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~--~~l~~Lk~ELE 684 (1376)
......+.... ..+......+..+. ..+..+..++.++..+...+..+. .....+...|.
T Consensus 443 ~~~~e~~~~~~-------~~i~~~~~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 504 (1311)
T TIGR00606 443 ELKKEILEKKQ-------EELKFVIKELQQLE-----------GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504 (1311)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHhhcc-----------cChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 11111000000 00000000000000 000111111122222221111111 11111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000646 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAG 764 (1376)
Q Consensus 685 ~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~ 764 (1376)
..+..+..++..+..++..+..+...-+ ....+.-++..+......+..+...+. ..+...
T Consensus 505 ~~~~~~~~le~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~k~~~~~~~~~~~~----------~~~~~~- 565 (1311)
T TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTT--------TRTQMEMLTKDKMDKDEQIRKIKSRHS----------DELTSL- 565 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHh-
Confidence 2222222222222222222111111110 000000001111111111111111000 000000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHH
Q 000646 765 LRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMY 844 (1376)
Q Consensus 765 ~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~ 844 (1376)
+. .+..+ ..++..+..+...+.........+. .-...+|..++.....+++...+...+.+++.. ...+.+|
T Consensus 566 ~~--~~~~~-~~l~~~~~~~~~el~~~~~~~~~~~----~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~~~~~ 637 (1311)
T TIGR00606 566 LG--YFPNK-KQLEDWLHSKSKEINQTRDRLAKLN----KELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCGSQDE 637 (1311)
T ss_pred cC--CCCCc-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhH
Confidence 00 01111 3344455555555555555555444 444455555555444444444443333333330 0022222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhcc---c----cchhhhhHHHHHHhHHHHHHH---
Q 000646 845 EEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANN---S----SSENELLVETNNQLKSKVAEL--- 914 (1376)
Q Consensus 845 q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~---~----~~~~~~L~~~k~~Le~~i~~L--- 914 (1376)
.. .+..++.++......+..+.....-...=+..++++..+ + +..-.....-...|+..+..+
T Consensus 638 ~~-------~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~ 710 (1311)
T TIGR00606 638 ES-------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDK 710 (1311)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhh
Confidence 22 334444444444444444444444444444444221000 0 000000112222333333322
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHH
Q 000646 915 QELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQ 994 (1376)
Q Consensus 915 qe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~ 994 (1376)
...+.......+...+.+......+ +.++. .+..+..+|+..+.+++..
T Consensus 711 ~~~~~~~~~~~~~~~e~l~~l~~~~-----------------------------~~~~~--l~~~eip~l~~~l~~le~~ 759 (1311)
T TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPGR-----------------------------QSIID--LKEKEIPELRNKLQKVNRD 759 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH-----------------------------HHHHH--HHHhhchhHHHHHHHHHHH
Confidence 2222222222222222222211111 12222 2234456666666666655
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhh
Q 000646 995 IKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSA 1074 (1376)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~ 1074 (1376)
+.. ....++.++..+..+...++.+++ +.+++..|.++..++.+++++|.+|..++.
T Consensus 760 l~~---------------------~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~- 816 (1311)
T TIGR00606 760 IQR---------------------LKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQ- 816 (1311)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444 223678899999999999999999 999999999999999999999999999996
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHH
Q 000646 1075 TIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFK 1154 (1376)
Q Consensus 1075 ~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~ 1154 (1376)
..+.++|+++|+..+..++..++.++..+..++.+++....+++.| ...+.++...-..+..++..+..+.
T Consensus 817 -~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L----q~ki~el~~~klkl~~~l~~r~~le---- 887 (1311)
T TIGR00606 817 -GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL----KSKTNELKSEKLQIGTNLQRRQQFE---- 887 (1311)
T ss_pred -cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4556789999999999999999999999999999999999999999 5555555555566666888887777
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Q 000646 1155 SEIESLKAQAAE----KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQL 1230 (1376)
Q Consensus 1155 ~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~ 1230 (1376)
.+|..+...+.+ +..++..|..|.+.+..+...+.+ ++..+...+..++..+ +.+...+
T Consensus 888 ~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~~--- 950 (1311)
T TIGR00606 888 EQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE----LISSKETSNKKAQDKV----------NDIKEKV--- 950 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------HHHHHHH---
Confidence 888888888877 899999999999999999999999 9999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHh--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000646 1231 QRELQIAQTAIAEQ--RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLK 1295 (1376)
Q Consensus 1231 ~~el~~l~~~I~~y--~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~k~ 1295 (1376)
++|..++..|.+| .|+|.++ ..|..++..+...|..+..++..++.+|+.+.+++.++++.+.
T Consensus 951 -~~~~~~~~~i~~y~~~~~~~qL-~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606 951 -KNIHGYMKDIENKIQDGKDDYL-KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred -HHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 8889999 9999999999999999999999999999999999999988876
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.97 E-value=3.4e-18 Score=227.16 Aligned_cols=1003 Identities=21% Similarity=0.273 Sum_probs=515.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhhH
Q 000646 140 KCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-AKRKELAEVKEAF---DGLSLEIEQSRSRLQELEHKLQCSV 215 (1376)
Q Consensus 140 ~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~-~~~~~L~~~ke~~---e~~~~~l~~~kkk~q~~~~~L~~~~ 215 (1376)
.+...+....+|-..+..+|.+.+ ++...-..+..+. ....+|..-++.+ +++...+...+-.++....++..++
T Consensus 839 ~~~~~~~e~~~l~~~l~~~e~~~~-ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~ 917 (1930)
T KOG0161|consen 839 EMRAKEEEIQKLKEELQKSESKRK-ELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERL 917 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444454444444443 3333333333333 3333344444333 5555555555555555666665555
Q ss_pred HHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhh----HHHHHHhhhhhh
Q 000646 216 DEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEI 291 (1376)
Q Consensus 216 ~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~KtlE~ql~~l~~e~~~~~~~~~~~~k----~ee~ls~~~~eL 291 (1376)
++ .+... +..+.++ -..+.-+..-+.....+|+.+..++-|.....-++.++.+ +++.++...-+=
T Consensus 918 e~------~ee~~---~~le~~~-~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 918 EE------EEEKN---AELERKK-RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HH------HHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 22211 1122222 2222333333334457777777777777777777777655 455555555554
Q ss_pred hHHHHHhCCCHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 292 SAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEE 371 (1376)
Q Consensus 292 ~~~~e~lglsKaiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee 371 (1376)
..+++.++=..+.|...+++..++.+++..+.+++..+...+..-+....++++....+.+.+ ..+...+.+.
T Consensus 988 k~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el-------~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 988 KELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL-------KDLQESIEEL 1060 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHH
Confidence 444444444445555667777888777777777777776666665555555555555555544 4444445455
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhc
Q 000646 372 VNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALAN 451 (1376)
Q Consensus 372 ~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~ 451 (1376)
...+..+...+.....++..+...++........+.+.|.+|.+.|.++.+.++.-.....+....++.-..
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~-------- 1132 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE-------- 1132 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 556666777777777777778888888888888888888888877777777777766666666666665555
Q ss_pred hHHHHHHHhcHHHHhhhhHHHHHHhccch--------------HHHHHHHHHhHHHHHH----HHHHHhhhhhhHHHHHH
Q 000646 452 NAELELKLKSLEEQHNETGAAAATASQRN--------------LELEDIIRASNEAAEE----AKSQLRELEPRFIAAEQ 513 (1376)
Q Consensus 452 ~~El~~~~k~lee~~~~he~~~~~~~qk~--------------~EL~~qi~~~~~~~Ek----~k~~l~~l~~~~~~~Ek 513 (1376)
+|+.+...|++.....-+++....++- ...+.++..++....+ .-.++..+...+..+++
T Consensus 1133 --ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lek 1210 (1930)
T KOG0161|consen 1133 --ELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEK 1210 (1930)
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888877555555444333333 2223333332222222 22222344444444444
Q ss_pred HHHHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000646 514 RSVELEQQLNLVELKSSDSE-------REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSS 586 (1376)
Q Consensus 514 k~keLE~Ql~elq~K~~e~e-------rei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsrir 586 (1376)
....++..+..+...+.... +-...++.++..++..+......+..+..+.......+..+.+.+......+.
T Consensus 1211 ek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~ 1290 (1930)
T KOG0161|consen 1211 EKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLS 1290 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHH
Confidence 44433333333333333222 22222233333333333333333333222222233333333333322222222
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 587 ELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAE 666 (1376)
Q Consensus 587 eLEEele~L~EeLeE~e~rak~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~e 666 (1376)
.+......+..++++..............+. .++..++......+.++.+-.+....+.+++....
T Consensus 1291 ~~~r~~~~~~~qle~~k~qle~e~r~k~~l~--------------~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~ 1356 (1930)
T KOG0161|consen 1291 ALSRDKQALESQLEELKRQLEEETREKSALE--------------NALRQLEHELDLLREQLEEEQEAKNELERKLSKAN 1356 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222221111111111110110 11111111122222222222223333333333333
Q ss_pred HhhHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 667 AGSKQY----------------------SDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDT 724 (1376)
Q Consensus 667 qel~el----------------------~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~E 724 (1376)
.....| ...+..+...++.++..+..++.....++..+.++...++........|+..
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k 1436 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKK 1436 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3333333444444444444444444444444444444444333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 000646 725 SNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHES 804 (1376)
Q Consensus 725 ieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~ 804 (1376)
...+...|.+.....+.+-.+++-.+.-.. . ..+.+..+..+++.+...++.. . +
T Consensus 1437 ~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r-------~-------~~tel~kl~~~lee~~e~~e~l-------~----r 1491 (1930)
T KOG0161|consen 1437 QKRFEKLLAEWKKKLEKLQAELDAAQRELR-------Q-------LSTELQKLKNALEELLEQLEEL-------R----R 1491 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------hHHHHHHHHHHHHHHHHHHHHH-------H----H
Confidence 333333333333333333333222111111 1 1233333344444443333333 3 5
Q ss_pred hhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HHHHHHHHHH-H
Q 000646 805 LMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAG--------KY------ALLKEELDSY-F 866 (1376)
Q Consensus 805 ~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~--------k~------~~l~~Ele~~-~ 866 (1376)
..+.+...+.+ +++-+++.-.|.. +-+|.++.++-++|..++|+.. ++ ..+..|+++. .
T Consensus 1492 enk~l~~ei~dl~~~~~e~~k~v~ele---k~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ 1568 (1930)
T KOG0161|consen 1492 ENKNLSQEIEDLEEQKDEGGKRVHELE---KEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQ 1568 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655555 5555566655555 9999999999999988888762 22 2333343322 2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 867 IKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 867 ~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
.+-.-.|..++.+...+..+...+..=....+..+..+++|+++|++|+..|+.+-.....+-..+++...++.+|.-++
T Consensus 1569 ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~ 1648 (1930)
T KOG0161|consen 1569 EKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQREL 1648 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHH
Confidence 24455677777777777777776666666777888889999999999999999999999999999999999999888877
Q ss_pred HHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhh
Q 000646 947 SRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNL 1026 (1376)
Q Consensus 947 ~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~l 1026 (1376)
.. +-...+.+.+|...+-+++..+..+.-+|...++.++.+-+- +
T Consensus 1649 e~-------~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~----------------------------a 1693 (1930)
T KOG0161|consen 1649 ED-------AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQ----------------------------A 1693 (1930)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 22 223566777788888888888888888888888777766444 2
Q ss_pred HhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 1027 ESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQG 1106 (1376)
Q Consensus 1027 ea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~ 1106 (1376)
+....++.+.+..+.+-.........+|..+|..++..+.+....+ ....|..+++...+..
T Consensus 1694 E~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~------------------~~~~Er~kka~~~a~~ 1755 (1930)
T KOG0161|consen 1694 ELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL------------------RAAEERAKKAQADAAK 1755 (1930)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHH
Confidence 2222233222222222123333344444445555555544444443 3444555555555555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1107 LQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVET 1186 (1376)
Q Consensus 1107 L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~ 1186 (1376)
+..++..-+.-+..+ .+..+-|+..+-.+..+|..-.... +..--..|..++..|..|+.++....-
T Consensus 1756 ~~~el~~Eq~~~~~l----e~~k~~LE~~~kdLq~rL~e~E~~a---------~~~~k~~i~~Learir~LE~~l~~E~~ 1822 (1930)
T KOG0161|consen 1756 LAEELRKEQETSQKL----ERLKKSLERQVKDLQLRLDEAEQAA---------LKGGKKQIAKLEARIRELESELEGEQR 1822 (1930)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh---------hhccHHHHHHHHHHHHHHHHHHhHhhh
Confidence 555555555444444 3333333333322222222211111 000001256666666666666654443
Q ss_pred HhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----hcCccchHHHHHHHHHHH
Q 000646 1187 QFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ----RGADSQKDSEREAALKSS 1262 (1376)
Q Consensus 1187 ~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y----~~~~sqL~~e~e~~lk~~ 1262 (1376)
.--+- ...-...+.+..+++-.+ +.-...+..+++.+.-++..|..| ...+... ..+....+.+
T Consensus 1823 ~~~e~-~k~~rk~er~vkEl~~q~----------eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~-~~~~~k~R~~ 1890 (1930)
T KOG0161|consen 1823 RKAEA-IKGLRKKERRVKELQFQV----------EEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEA-NQNLSKYRKL 1890 (1930)
T ss_pred hhHHH-hHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 33331 112234455566666666 223333333447777777777777 3334444 4566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1263 LEELGAKNKEAALLQNKVAELEQKLQQA 1290 (1376)
Q Consensus 1263 ~~ei~~l~~ei~~l~~eIn~leqkL~dS 1290 (1376)
+.+++.........++.|+.+..+.-.+
T Consensus 1891 q~ele~a~erad~~e~~~~~lr~k~r~~ 1918 (1930)
T KOG0161|consen 1891 QRELEEAEERADTAESELNKLRSKLRST 1918 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888888888776543
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.92 E-value=1.3e-12 Score=171.95 Aligned_cols=284 Identities=17% Similarity=0.205 Sum_probs=189.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHH
Q 000646 823 RDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVE 902 (1376)
Q Consensus 823 ~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~ 902 (1376)
.-++.-+|-++|+.-..+|..|+...--...-+..++.++++++.. ++..++....++..++.+++.+...+.-|.+
T Consensus 910 ~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~---~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~ 986 (1822)
T KOG4674|consen 910 ELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLE---LEAKIESLHKKITSLEEELSELEKEIENLRE 986 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555668888888888888888777777778888888888853 4445555555555555555555555555554
Q ss_pred HH----HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhh
Q 000646 903 TN----NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRD 978 (1376)
Q Consensus 903 ~k----~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e 978 (1376)
.. ...++++..+..++..++++........-.+-..+.++..++..-.+.-..+.+.-++..-+|.+....++-+.
T Consensus 987 e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ 1066 (1822)
T KOG4674|consen 987 ELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLR 1066 (1822)
T ss_pred HHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34577788888888888888888888888888888888888866666666777777777777777777766666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHH
Q 000646 979 IEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDL 1058 (1376)
Q Consensus 979 ~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi 1058 (1376)
.++-..+..+..|...... ....+..+...+.+-+. .++.++-.....|.-|...-
T Consensus 1067 ee~~~~~~e~~~Lk~~~~~---------------------~~~~l~e~~~~w~E~~~---~Leqe~~~~~~~~~~L~~qN 1122 (1822)
T KOG4674|consen 1067 EEFAKCNDELLKLKKSRES---------------------RHALLSEQERDWSEKED---ALEQEVNELKKRIESLEKQN 1122 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHH---------------------HHhHHhhcccchHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555544433 11233344444444443 37777777778888888888
Q ss_pred HHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHH
Q 000646 1059 ALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQ 1138 (1376)
Q Consensus 1059 ~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~ 1138 (1376)
+-+..+|..+.....+ .+.+- .... ..++..-+..+|++..-+-..++-+..++.+|..+|....+.+++.-..
T Consensus 1123 slLh~qie~~s~~~~~--~n~S~--~~~g--~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~s 1196 (1822)
T KOG4674|consen 1123 SLLHDQFEELSQQSAV--SNLSA--MLLG--LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRS 1196 (1822)
T ss_pred HHHHHHHHHHhhhhhh--ccccc--cccc--hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889888888431 01111 1111 4456667777777777777777777777777766666555554444433
Q ss_pred H
Q 000646 1139 L 1139 (1376)
Q Consensus 1139 l 1139 (1376)
+
T Consensus 1197 L 1197 (1822)
T KOG4674|consen 1197 L 1197 (1822)
T ss_pred H
Confidence 3
No 6
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.91 E-value=1e-15 Score=195.70 Aligned_cols=241 Identities=23% Similarity=0.246 Sum_probs=182.9
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000646 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1376)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1376)
..+.....+..+......++. +--.+..+.++..++...++++..+..+|. .+.++.+|++|++.+...+.+..++++
T Consensus 762 ~~e~~~~~l~~~~~~~~~~~~-l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~-~~~d~i~t~~E~~~Ek~~~~~~~~~~r 839 (1294)
T KOG0962|consen 762 EEEDDEKLLDTIDAAEESAET-LQTDVTVLERFLKDLKLREKEIEELVSELD-SSVDGIRTVDELRKEKSKKQESLDKLR 839 (1294)
T ss_pred hhhHHHHHhcccchhHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555666 667788888899999999999999999984 136889999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000646 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKEL 1177 (1376)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L 1177 (1376)
..+..++.......++++.+ .+...++.+.-.++..+|+...++. .+|.++...+.. +..+...+-.+
T Consensus 840 ke~E~~~k~~~~~~~~i~~l----~~~~~e~k~~~~~~~~~l~~~~qle----~~~~~l~e~~~~~~s~~~e~~~~~~~~ 911 (1294)
T KOG0962|consen 840 KEIECLQKEVIEQEREISRL----INLRNELKEEKQKIERSLARLQQLE----EDIEELSEEITRLDSKVKELLERIQPL 911 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHhhHhhhcch
Confidence 99999999999999999999 9999999999999999999999888 777777766544 66666777777
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh------hcCccch
Q 000646 1178 EELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ------RGADSQK 1251 (1376)
Q Consensus 1178 ~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y------~~~~sqL 1251 (1376)
.+.+..+...+.+ +....+..+...+..+ ..++.++ +.|+.++.....| .-+.++|
T Consensus 912 ~~~l~e~~s~~e~----~k~~~~~~~~~aqk~~----------~~ine~~----s~l~~~~~~~~~~~~~~~~~~~~~~l 973 (1294)
T KOG0962|consen 912 KVELEEAQSEKEE----LKNERNTSEKLAQKKR----------NDINEKV----SLLHQIYKLNECFEQYGFDDLRIAQL 973 (1294)
T ss_pred hhhHHHHHHHHHH----HHHHhhHHHHHHHHHH----------HHHHHHH----HHHHHHHHhHHHHHHHhhhhhchHHH
Confidence 7777777777777 5555555555555555 8889999 8899988888887 2334555
Q ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1252 DSEREAALKSSLEE-----------------------LGAKNKEAALLQNKVAELEQKLQQAQ 1291 (1376)
Q Consensus 1252 ~~e~e~~lk~~~~e-----------------------i~~l~~ei~~l~~eIn~leqkL~dSd 1291 (1376)
..|+..+...... +-.++.++.++..+++.+..++..++
T Consensus 974 -~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 974 -SESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5566444443333 33455556666666666666666665
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.8e-13 Score=183.12 Aligned_cols=482 Identities=16% Similarity=0.180 Sum_probs=277.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000646 663 EEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELL 742 (1376)
Q Consensus 663 k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~L 742 (1376)
..|...+......+..+......++..+..++..+...+..+..+..++......+.. .-.+.+|...|..++..+...
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~~~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCGSQDEESDLERLKEEIEKS 651 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666666666666666666655555551 125567777888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------------ccchh----hHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhhh
Q 000646 743 RNDLNMTQERLESIEKDLKAA-------------GLRET----DVMEKLKSAEEQ----LEQQTRVLEQATSRNSELESL 801 (1376)
Q Consensus 743 R~El~l~q~k~eslE~~l~~~-------------~~~ee----e~~~k~k~~~~~----l~~~~~~Le~e~~~~~e~~~~ 801 (1376)
+..+...+.....+..-+... ++..+ .|..++...... .......+.........+.
T Consensus 652 ~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~-- 729 (1311)
T TIGR00606 652 SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML-- 729 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH--
Confidence 888888888888777766655 12222 222222222222 1111222222211111111
Q ss_pred HHHhhHhhhHHHHHHHHhhcccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhh
Q 000646 802 HESLMRESEMKLQDALANITSRD-SEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFI------KVTSLES 874 (1376)
Q Consensus 802 ~e~~~kk~E~~L~eal~~~~~~~-~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~------~l~~~E~ 874 (1376)
.|.-.++..++.. .+...|.+++..+..++......+++....+..+..++..+.. .+..+..
T Consensus 730 ----------~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ 799 (1311)
T TIGR00606 730 ----------GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQM 799 (1311)
T ss_pred ----------HhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0111234444442 4555555666666666666666666666666555555544422 1222245
Q ss_pred hHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhh
Q 000646 875 TNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHS 954 (1376)
Q Consensus 875 ~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~ 954 (1376)
....++.++..+..++....+. .....+++.|..++.+++....+.+............|..|......
T Consensus 800 ei~~l~~qie~l~~~l~~~~~~-----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e------ 868 (1311)
T TIGR00606 800 ELKDVERKIAQQAAKLQGSDLD-----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE------ 868 (1311)
T ss_pred HHHHHHHHHHHHHHHhcccccc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 5555566666666655544331 14455666666666666666666666666666666666666444311
Q ss_pred hhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHh
Q 000646 955 ATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQ 1034 (1376)
Q Consensus 955 ~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLe 1034 (1376)
......++.+++....+++.+..+|...+..+...+...+.........-.....+++. -....+.....+.
T Consensus 869 -----l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 940 (1311)
T TIGR00606 869 -----LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE---LISSKETSNKKAQ 940 (1311)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 11111222224444446666777777777666666666444333322211111112222 1222333334444
Q ss_pred hhhhhhHhhhhhhHHHHhhHHHHHHHHH-----hhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 1035 TRSGHFERESGGLVETNLKLTEDLALYE-----TKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1376)
Q Consensus 1035 e~~~~lEsElr~~v~~i~rL~kEi~~lE-----~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1376)
.. +.. ++..+..+..++..|..|. .+|.++...+. +...++++|+..+..++..++.++..++.++.
T Consensus 941 ~~---~~~-~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~----~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~ 1012 (1311)
T TIGR00606 941 DK---VND-IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELN----TVNAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012 (1311)
T ss_pred HH---HHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 444 6778888889999998887 45888888865 22678899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000646 1110 QISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVE 1185 (1376)
Q Consensus 1110 qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae 1185 (1376)
.+....+.++.+. ..+.++++...|..+..++....- +.+..+...+...++. ...+...+..|+.+|...+
T Consensus 1013 ~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~~~--~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~ 1088 (1311)
T TIGR00606 1013 QERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088 (1311)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888873 577778888888888887775411 2233444444444433 3333444445555555554
Q ss_pred HHh
Q 000646 1186 TQF 1188 (1376)
Q Consensus 1186 ~~l 1188 (1376)
..|
T Consensus 1089 ~eL 1091 (1311)
T TIGR00606 1089 KEL 1091 (1311)
T ss_pred HHH
Confidence 444
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.87 E-value=5.6e-11 Score=156.98 Aligned_cols=190 Identities=20% Similarity=0.181 Sum_probs=100.8
Q ss_pred HHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 000646 803 ESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA---------------------AGKYALLKEE 861 (1376)
Q Consensus 803 e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea---------------------~~k~~~l~~E 861 (1376)
....+.+|+++-++........+|..++-.....+..+|-+|+.++.-. ...+.-+..+
T Consensus 989 ~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 989 ELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREE 1068 (1822)
T ss_pred hccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666555555555555555455544545555544443332 2455566666
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHH
Q 000646 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTE 941 (1376)
Q Consensus 862 le~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~ 941 (1376)
+-.+...+.++...+..++.-++++.. .......+|-++...++.+|..|..+..-.|...+.........-..+..
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~---~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~ 1145 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQER---DWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAML 1145 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 666666777777666666666666554 34455566666677777777777777777777776666665432222222
Q ss_pred HHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 000646 942 LTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKS 997 (1376)
Q Consensus 942 L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~ 997 (1376)
++ ++.-+.+-+.--.-.+...+++.=..+-..-+-+++.-++..++.|.+.+..
T Consensus 1146 ~g--~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~ 1199 (1822)
T KOG4674|consen 1146 LG--LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTA 1199 (1822)
T ss_pred cc--hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222333333333333333333222222223344555566666666655543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=5.9e-10 Score=149.20 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHH
Q 000646 834 LKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAE 913 (1376)
Q Consensus 834 L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~ 913 (1376)
+..+...+..++..+.++...+..+..++..+...+..+...+..++..+..+...+..+......+......++.++..
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 751 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554455555555555555555555555555554444444333333334444444444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHHhh
Q 000646 914 LQELLDSAISEKEATGQQLASH 935 (1376)
Q Consensus 914 Lqe~l~~~~~e~e~~~e~l~~~ 935 (1376)
++..+.....+......++...
T Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~ 773 (1179)
T TIGR02168 752 LSKELTELEAEIEELEERLEEA 773 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=2.9e-10 Score=152.15 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhH
Q 000646 979 IEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLV 1048 (1376)
Q Consensus 979 ~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v 1048 (1376)
...++|..++..|..++..|++.-..|. . .++....++.++...+..|..-+..++.+++..-
T Consensus 965 ~~~~~l~~~i~~lg~aiee~~~~~~~a~--e-----r~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 965 DDEEEARRRLKRLENKIKELGPVNLAAI--E-----EYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777763221111 1 2233334666666666666665555555554433
No 11
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.76 E-value=1e-19 Score=234.19 Aligned_cols=555 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1376)
Q Consensus 332 ~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~ 411 (1376)
.+..++...++....+.++.....++..++.++...+++.-.....+......+.+.+.++...|+.....+..+...+.
T Consensus 188 qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~ 267 (859)
T PF01576_consen 188 QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLR 267 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHH
Confidence 44444455555556666666666666666666666666666666666666666666777777777777777766666666
Q ss_pred HhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch----HHHHHHH
Q 000646 412 DLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDII 487 (1376)
Q Consensus 412 dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~----~EL~~qi 487 (1376)
.+...+..+.+.+++-......+...+++... ||..+++-++..+..+-..+..++++. .++.+++
T Consensus 268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~----------El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~l 337 (859)
T PF01576_consen 268 QLEHELEQLREQLEEEEEAKSELERQLSKLNA----------ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQL 337 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555554444444444444444444 666666666666655554555555544 5555555
Q ss_pred HH---hHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000646 488 RA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEV 553 (1376)
Q Consensus 488 ~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~el 553 (1376)
+. ..+.+++.+..| .........++++.+.+..++.++..++......+..+......+..++..+
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~L 417 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKL 417 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55 333344444443 4455555566666777777777777666665555444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhh
Q 000646 554 EEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKR 633 (1376)
Q Consensus 554 E~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~~rqrs~eLeell~~~kskLEe~~~~ 633 (1376)
...+..+...+..+......|. ..+..|...+......+.+ .....+.|+..+...+..|++..+.
T Consensus 418 k~~lee~~e~~e~lere~k~L~-------~El~dl~~q~~~~~k~v~e-------Lek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 418 KNELEELQEQLEELERENKQLQ-------DELEDLTSQLDDAGKSVHE-------LEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHH-------HhhccchhhhhhhccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332222222222 2222222222111111111 1111122222222222333333333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 000646 634 VNELELLLEAEKYRIQ-ELEEQISKLEKKCE----EAEAGSKQYSDKVCELASELEAFQ-------ARTSSLEVALQMAN 701 (1376)
Q Consensus 634 leeLEe~LE~~K~Rlq-ELEeqis~LEKK~k----~~eqel~el~~~l~~Lk~ELE~~e-------ke~relEt~L~e~~ 701 (1376)
+...+ ..+.|++ ++...-..+++.+. .|+.....+...+..+...|+.-. ..-..++..+..+.
T Consensus 484 l~~~E----~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 484 LEAEE----QKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2234444 44444444444442 233333333334444444443111 11112222233332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 000646 702 DKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQL 781 (1376)
Q Consensus 702 ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l 781 (1376)
..+...+....++.+.++++...+.+++..+++.....+. +......+++.+
T Consensus 560 ~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~----------------------------~~~~~~~~e~r~ 611 (859)
T PF01576_consen 560 IQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREE----------------------------LREQLAVSERRL 611 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 2233333333333444444444444444444444443333 344444555555
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 000646 782 EQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-------GK 854 (1376)
Q Consensus 782 ~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~-------~k 854 (1376)
..+..+|++.+.....+. +.++.+|.++.++-+.++....-...|....++|++.|-.++.+++++. .|
T Consensus 612 ~~l~~elee~~~~~~~a~----r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek 687 (859)
T PF01576_consen 612 RALQAELEELREALEQAE----RARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEK 687 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666 6666667666664333333332233334666667777777766666655 22
Q ss_pred H-------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhh-hhHHHHHHhHHHHHHHHHHHHHHhhhHH
Q 000646 855 Y-------ALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE-LLVETNNQLKSKVAELQELLDSAISEKE 926 (1376)
Q Consensus 855 ~-------~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~-~L~~~k~~Le~~i~~Lqe~l~~~~~e~e 926 (1376)
+ ..|-.||-.-+....++++.+..++..+.++..++..+.+... +--....+|+++|.+|+.+|+......-
T Consensus 688 ~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~ 767 (859)
T PF01576_consen 688 AKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRA 767 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2 3344444444444444555555555555555554444332211 1135788999999999999999999999
Q ss_pred HHHHHHHhhhccHHHHHHHH
Q 000646 927 ATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 927 ~~~e~l~~~~~~~~~L~~~l 946 (1376)
.+.--++++...|-.|+-+.
T Consensus 768 ~~~k~~rk~er~~kEl~~q~ 787 (859)
T PF01576_consen 768 EAQKQLRKLERRVKELQFQV 787 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99999999988888887766
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.75 E-value=3e-09 Score=142.67 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 000646 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANN 888 (1376)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~ 888 (1376)
.+..+..++..++.++.+....+..+..++..+...+..+.+....+..++..+..
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~ 730 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444455544444444444444444444444443
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.73 E-value=1.5e-09 Score=145.86 Aligned_cols=318 Identities=26% Similarity=0.357 Sum_probs=153.5
Q ss_pred HHHHHhhhhhhhH-HHHHhCCCH---------HHHHHHHHhhhhHHHhhhhhHHHHHHHHH------hhHhHHHHHHHHH
Q 000646 281 EEELKRSNTEISA-IQEELGLSK---------LQLLDLEQRFSSKEALITNLTQELDLIKA------SESQAKEEISALD 344 (1376)
Q Consensus 281 ee~ls~~~~eL~~-~~e~lglsK---------aiL~~vekkf~~~k~l~k~~~~el~~~K~------~~~~lked~~~le 344 (1376)
..-++.+-.++-. +++--|+++ ..|+.+..+++.+..++.++...++.+++ ....++.++..++
T Consensus 147 ~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~ 226 (1163)
T COG1196 147 EEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226 (1163)
T ss_pred HHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444 444455554 44555555555566666666666666555 2222223333332
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 345 ------------NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD 412 (1376)
Q Consensus 345 ------------~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~d 412 (1376)
..+..+...+.....++..+..++++-...+..+...+.+....+..+..++-.+......++..+..
T Consensus 227 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~ 306 (1163)
T COG1196 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555544444445455555555555
Q ss_pred hHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHH
Q 000646 413 LTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNE 492 (1376)
Q Consensus 413 L~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~ 492 (1376)
+...+..+......+...+.........+...+.-...-..++......+.....+++.... ....++...++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~ 383 (1163)
T COG1196 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS---ALLEELEELFEALRE 383 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Confidence 55444444444444444444444433333332222222233455555555555555544333 111233334444444
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 493 AAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKIT 572 (1376)
Q Consensus 493 ~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs 572 (1376)
.+.....++......+...+..+..++..++.+..+...+.+++..+...+..+...+.....++..+...++.+...+.
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 573 QLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 573 ~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.++..+..+...+..+...+..+...+..
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 464 ELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544444
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.72 E-value=1.4e-09 Score=145.97 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHH
Q 000646 965 IQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE 999 (1376)
Q Consensus 965 ~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~ 999 (1376)
....+....+..+..+..+|......+...|..+.
T Consensus 979 ~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555566666655555555544
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.68 E-value=6.1e-08 Score=130.53 Aligned_cols=114 Identities=28% Similarity=0.302 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHH
Q 000646 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVA 912 (1376)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~ 912 (1376)
+|..++.++..+...+..+...+..++.++..+...+..+.+....+......+...+..+......+......++.++.
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888887777777777777777777777777777777777777777766555444444444444444444444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 913 ELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 913 ~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
.|.+.++..........+.+......+..|...+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 781 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEI 781 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443333333
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.65 E-value=3.4e-08 Score=125.47 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=80.8
Q ss_pred hhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000646 312 FSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391 (1376)
Q Consensus 312 f~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~e 391 (1376)
++..+.++++-+..+..|+..+..++.+..++...+..|.+.| +...++..+..+++........+.. +......|..
T Consensus 41 lkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~r 118 (775)
T PF10174_consen 41 LKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFER 118 (775)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHH
Confidence 3788899999999999999999999999999999999999999 8888988888887655555554444 4445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhh
Q 000646 392 VNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNS 434 (1376)
Q Consensus 392 L~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~ 434 (1376)
++.+.+.+......+.+.+..+...+..+...++...+.+.++
T Consensus 119 l~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL 161 (775)
T PF10174_consen 119 LQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKL 161 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444444444444433333333333333333
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.62 E-value=3e-09 Score=139.57 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhh
Q 000646 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRN 433 (1376)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~ 433 (1376)
+......+..+...+..+......+...+..+...+..+....+.|...+..
T Consensus 253 l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~ 304 (880)
T PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL 304 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333334444444444444444444444444444444444333333333333
No 18
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=1.3e-08 Score=133.45 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHH
Q 000646 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1376)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i 911 (1376)
.++..++..+......++++..++..+..++..+...+...++..+.++.++.++.+++..+......+...+.+|+ .+
T Consensus 516 ~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~ 594 (880)
T PRK02224 516 ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RI 594 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44555555566666777888889999999999999999999999999999999999998888888888888888888 67
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 000646 912 AELQELLDSAISEKEATGQQ 931 (1376)
Q Consensus 912 ~~Lqe~l~~~~~e~e~~~e~ 931 (1376)
.+++.++.+..+........
T Consensus 595 ~~~~~~i~~~~~~~~~~~~~ 614 (880)
T PRK02224 595 RTLLAAIADAEDEIERLREK 614 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777444444433333
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.48 E-value=4e-07 Score=119.64 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=34.5
Q ss_pred HHhhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHH
Q 000646 242 FERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEE 297 (1376)
Q Consensus 242 lEk~~~~~~~~~KtlE~ql~~l~~e~~~~~~~~~~~~k~ee~ls~~~~eL~~~~e~ 297 (1376)
+++....++...+.+++++..+...+..+.+....+.+.+..++....++......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e 215 (880)
T PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE 215 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455567777777777777666666666655666666666666554443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=3.6e-06 Score=107.46 Aligned_cols=225 Identities=16% Similarity=0.273 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q 000646 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND------YKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDR 605 (1376)
Q Consensus 532 ~erei~eLeeklskLq~EL~elE~ELeele~klee------~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r 605 (1376)
..+.+.++...+..+..-+..++.....+...+.. .......+++-|..-.+++..++..+..+..++.....+
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~ 260 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSR 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777777888888887777777544222111 111122445555555555555555554444444443333
Q ss_pred hhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000646 606 ANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEA 685 (1376)
Q Consensus 606 ak~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~ 685 (1376)
.........++...+ +........+...++.++..+..-...+..+..++.........+...+.-++..+.+
T Consensus 261 ~~~~~~~r~~~~k~l-------e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 261 GELSEADRDRLDKQL-------EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred ccccccchHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 322222111111111 1111111112222333333333333444444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 686 FQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1376)
Q Consensus 686 ~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1376)
....+.-+.+.+..++..+..-..+++..+..+..++.++.-+...|..+.+.++....+++.++.++++++..|..+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556666666666666666666777777777777777777778888888888888999888877766
No 21
>PRK03918 chromosome segregation protein; Provisional
Probab=99.36 E-value=6.6e-06 Score=108.32 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=6.3
Q ss_pred CCccccccCCC
Q 000646 76 DKPSVVDRSSS 86 (1376)
Q Consensus 76 ~~~~~~~~~~~ 86 (1376)
+.+.+|.|+..
T Consensus 81 ~~~~~i~R~~~ 91 (880)
T PRK03918 81 GRKYRIVRSFN 91 (880)
T ss_pred CeEEEEEEEEc
Confidence 34556677653
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=0.00013 Score=94.02 Aligned_cols=265 Identities=21% Similarity=0.310 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhhhHHhHHH
Q 000646 179 KRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEG 258 (1376)
Q Consensus 179 ~~~~L~~~ke~~e~~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelEk~~~~~~~~~KtlE~ 258 (1376)
.+.+++...+.++.+...|.....++..+-. +.+.+++..+..- .-++..+.--+...+..+.++|+
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~------~~~~k~e~~~~~~-------~e~~~~~kn~~~~~k~~~~~~e~ 398 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESN------EEVEKNEAVKKEI-------KERAKELKNKFESLKKKFQDLER 398 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554445555555555555555543322 3345566665543 34434444455677778889999
Q ss_pred HHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhHHHHHhCCCH----HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhH
Q 000646 259 QMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSK----LQLLDLEQRFSSKEALITNLTQELDLIKASES 334 (1376)
Q Consensus 259 ql~~l~~e~~~~~~~~~~~~k~ee~ls~~~~eL~~~~e~lglsK----aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~ 334 (1376)
+-..+++.++.+.-++.++.+..+..+...+++-..|+...-.. .=++++++ .+.+.+..+...+..++....
T Consensus 399 ~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~---~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 399 EDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE---LLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999988888899999988888733332 22223322 222333344444555555555
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 335 QAKEEISALDNLLA-------DAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALE 407 (1376)
Q Consensus 335 ~lked~~~le~~~~-------eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE 407 (1376)
-++..+.+.+..+. ...+++.-.+.++..|..+.+..+.....+..++........+....+..++.......
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55666666654444 44444445555555555555555555555555544444444444444444444444333
Q ss_pred HHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHH
Q 000646 408 AAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKL 459 (1376)
Q Consensus 408 ~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~ 459 (1376)
..+.+....+..+......+-..+.++.+..--.-+.++-+.|++.=|.-+.
T Consensus 556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 556 QELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3333333333333333332333333333333333344444555554444433
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=0.00013 Score=93.89 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=93.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHH
Q 000646 978 DIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTED 1057 (1376)
Q Consensus 978 e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kE 1057 (1376)
..+++.|+.+++.+=+.- . ...+.+++....+++.+.+.|..+...+..-..-+.+..-.++++.++
T Consensus 884 k~~i~~lq~~i~~i~~e~-~------------q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 884 KARIKELQNKIDEIGGEK-V------------QAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred HHHHHHHHHHHHHhhchh-h------------HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 456788888887775543 2 345567788888888888888888877665555556666677788888
Q ss_pred HHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000646 1058 LALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1376)
Q Consensus 1058 i~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1376)
+.+.+..++.|...+. +...-+.++......+...++.+...+..+...++......+.|
T Consensus 951 ~~~~e~e~~~L~e~~~----~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 951 IEDTEKELDDLTEELK----GLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888854 22333467888888888888888888888888887777776666
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.07 E-value=0.00055 Score=93.30 Aligned_cols=72 Identities=21% Similarity=0.382 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHhhHHH
Q 000646 345 NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEA-AMADLTGNIAR 419 (1376)
Q Consensus 345 ~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~-~i~dL~s~i~e 419 (1376)
..+..+...+.....++..+...+ ..........+....+.+..+...|..+...+...++ .|..+...+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~---~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~ 353 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEI---KELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQ 353 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 334444444444444444444444 2223334555556666677777777777666666654 34444443333
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=99.04 E-value=0.00051 Score=91.12 Aligned_cols=8 Identities=25% Similarity=0.115 Sum_probs=4.2
Q ss_pred ccccccCC
Q 000646 78 PSVVDRSS 85 (1376)
Q Consensus 78 ~~~~~~~~ 85 (1376)
.-+|.|+.
T Consensus 79 ~y~i~R~~ 86 (895)
T PRK01156 79 VYQIRRSI 86 (895)
T ss_pred EEEEEEEE
Confidence 34556653
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00072 Score=89.76 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000646 771 MEKLKSAEEQLEQQTRVLEQATS 793 (1376)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~ 793 (1376)
..++..+..++..++..+.....
T Consensus 586 ~~~l~e~~~~l~~l~~~l~~le~ 608 (895)
T PRK01156 586 RSRSNEIKKQLNDLESRLQEIEI 608 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444455555554444443
No 27
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=0.0025 Score=81.43 Aligned_cols=199 Identities=20% Similarity=0.274 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000646 714 AADEKRKLQDTSNGYNEKLAEAENLL---ELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1376)
Q Consensus 714 lek~k~~LE~EieElkeqLeElE~~L---e~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~ 790 (1376)
++..++.-+.++..+..+|..++..- ..++.++++..-.+..++.++..- ..-.+-.-++.+.+.|..++..|.+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN--EFHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666555443 378888888887777777766554 2223456677777788887777766
Q ss_pred HhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 791 ATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVT 870 (1376)
Q Consensus 791 e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~ 870 (1376)
....--... .-.+.+|.+++++ .+.+. ..|+.++..|+.+...+++..+.++...-|.+.+.....
T Consensus 760 ~~~~~k~~~----~~i~~lE~~~~d~---~~~re-------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e 825 (1174)
T KOG0933|consen 760 KERALKKCE----DKISTLEKKMKDA---KANRE-------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHE 825 (1174)
T ss_pred HHHHHHHHH----HHHHHHHHHHhHh---hhhhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322222 3445677777653 12222 456666777899999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 000646 871 SLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1376)
Q Consensus 871 ~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~ 928 (1376)
+++..+.-.++.+..+...+..+.++.+.|-......+.++..++++|..........
T Consensus 826 ~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~ 883 (1174)
T KOG0933|consen 826 ELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDI 883 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888876666666666555555555555555555555554444333
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.73 E-value=0.0066 Score=83.06 Aligned_cols=218 Identities=17% Similarity=0.257 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000646 711 LNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1376)
Q Consensus 711 leelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~ 790 (1376)
..++++.+......+......+..+...+...+..+.-++.....+..++... ..+.+..+..++..+...+..
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~l~~ 696 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA------KEERKEQIEEQLNELEEELKQ 696 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433333333333333332 444455556666666666655
Q ss_pred HhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHH-----------HHHHHHHHHHHHHH-------
Q 000646 791 ATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLE-----------GQVKMYEEQLAEAA------- 852 (1376)
Q Consensus 791 e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq-----------~qik~~q~~~~ea~------- 852 (1376)
.......+...+......+.++++...... ..++..++..+. .+++.|+.+....=
T Consensus 697 ~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~------~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 697 LKQELEELLEELKEQLKELRNELKAQWQEL------EAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 555555554444444444444333321111 111222233333 33333333222211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh---hhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 000646 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANN---KANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATG 929 (1376)
Q Consensus 853 ~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~---~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~ 929 (1376)
.++..++.++..+...|...+..+..+-.=..-+.. ....+......|..+.+.++.++..+..++...........
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 850 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRR 850 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555554444332222222 23345556777777777777777777777777666665555
Q ss_pred HHHHhhhccHH
Q 000646 930 QQLASHMNTVT 940 (1376)
Q Consensus 930 e~l~~~~~~~~ 940 (1376)
.++......+.
T Consensus 851 ~~le~~~~~~~ 861 (1201)
T PF12128_consen 851 KELEEELKALE 861 (1201)
T ss_pred HHHHHHHHHHH
Confidence 55444444433
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.53 E-value=0.014 Score=76.17 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=95.3
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHhhhhhh
Q 000646 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRS-VELEQQLNLVELKSSDS 532 (1376)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~-keLE~Ql~elq~K~~e~ 532 (1376)
|+...++++.+..++ ..++...+-..-....+.|...+.+.....++++.. ..+..++.+...++..+
T Consensus 338 Ei~~~r~~~~~~~re-----------~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRRE-----------VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 555555555443332 346667777777788888888888888888888887 88888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000646 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEE 591 (1376)
Q Consensus 533 erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEe 591 (1376)
..++..++..+..|..++..+...+...+.........+.++...+...+..++.|..-
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888888888888877777777777777777777777666666655543
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=0.012 Score=75.47 Aligned_cols=210 Identities=16% Similarity=0.222 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhHHHhHhhhHHHHHHH
Q 000646 360 ELEDIKLKLQEEV---NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD-----LTGNIARMKELCSELEEKL 431 (1376)
Q Consensus 360 El~~l~~kleee~---~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~d-----L~s~i~eL~e~~eeLEeeL 431 (1376)
.|.++..+++.-+ ...+.....+..+...|..+..+|+..-....-....++- +-..+..+.+...+++..+
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 4444555555667777888888888777777766666554 3444455555555566666
Q ss_pred hhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHH
Q 000646 432 RNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAA 511 (1376)
Q Consensus 432 ~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~ 511 (1376)
..+..-+.+-+. ++..+-+++.+.-...|.+...+...+..+...++.+...+++.-....-|+.-....
T Consensus 758 ke~~~~~k~~~~----------~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l 827 (1174)
T KOG0933|consen 758 KEKERALKKCED----------KISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL 827 (1174)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555555555 5555556666666666655555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1376)
Q Consensus 512 Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk 579 (1376)
++.+..++.++..+...++.+..++..+...+............++.....++-.....++.+-....
T Consensus 828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 828 EKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 55555555555555555555555555555555555555555554444444444444444433333333
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.49 E-value=0.012 Score=73.81 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000646 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1376)
Q Consensus 706 eL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~ 785 (1376)
+......++...+..+..+.+..+.........+..++.++..+...+...+.+|... -.+++.-+-+....+.++.
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa---~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA---LKEAEAAKASEALALAEIK 438 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334455566677777777777777777777788888888888888888888888888 6666666666666666666
Q ss_pred HHHHHH
Q 000646 786 RVLEQA 791 (1376)
Q Consensus 786 ~~Le~e 791 (1376)
+--+..
T Consensus 439 ~l~e~~ 444 (522)
T PF05701_consen 439 ALSESE 444 (522)
T ss_pred Hhhccc
Confidence 533333
No 32
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.47 E-value=0.012 Score=72.60 Aligned_cols=292 Identities=19% Similarity=0.166 Sum_probs=158.5
Q ss_pred HHHHHHHhcHHHHhhhhHHHHHHhcc---chHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 000646 453 AELELKLKSLEEQHNETGAAAATASQ---RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529 (1376)
Q Consensus 453 ~El~~~~k~lee~~~~he~~~~~~~q---k~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~ 529 (1376)
.+|.+..+.+...+..-+++-+-+.+ -.+.|++-..++.-..=+-|..-.+....+.++..++..||..++.+....
T Consensus 346 ~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kER 425 (961)
T KOG4673|consen 346 LELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKER 425 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 35555544444444433333332222 224555544443333333334446777788899999999999999998888
Q ss_pred hhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhh
Q 000646 530 SDSEREVREFSEKLSQ--LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1376)
Q Consensus 530 ~e~erei~eLeeklsk--Lq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak 607 (1376)
+.+.+++..+...+.. ++.+|.+....|..+...-+.+.+++-.-...|+.|..+++..+--+....+.+..++.-.+
T Consensus 426 Dalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~ 505 (961)
T KOG4673|consen 426 DALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEEN 505 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence 8888888866555432 23567778888888888888888888888888888888877766555444444444221111
Q ss_pred hhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000646 608 MSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQ 687 (1376)
Q Consensus 608 ~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~e 687 (1376)
.+....+.- .+.+. .+..-|..+..++......+.+.+..++.+.
T Consensus 506 ~lk~il~~K------------------ee~Ek-----------------~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le 550 (961)
T KOG4673|consen 506 KLKSILRDK------------------EETEK-----------------LLQETIEKHQAELTRQKDYYSNSRALAAALE 550 (961)
T ss_pred HHHHHhhhH------------------HHHHH-----------------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111111000 00000 0001111112222222222222222233333
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 688 ARTSSLEVALQ---------------MANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQER 752 (1376)
Q Consensus 688 ke~relEt~L~---------------e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k 752 (1376)
.....+...+. .+++....|..++.++...+.+.++. +-++-+-+|-++.-++.+
T Consensus 551 ~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~----------aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 551 AQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQ----------AARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 33333322222 23333334444444444443333332 123334677777777777
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 753 LESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQAT 792 (1376)
Q Consensus 753 ~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~ 792 (1376)
++..|++-+.. -.++-++-+=+.|||+.|+++|...+
T Consensus 621 lqaaE~R~eel---~q~v~~TTrPLlRQIE~lQ~tl~~~~ 657 (961)
T KOG4673|consen 621 LQAAERRCEEL---IQQVPETTRPLLRQIEALQETLSKAA 657 (961)
T ss_pred HHHHHHHHHHH---HhhccccccHHHHHHHHHHHHHhhhh
Confidence 77777776666 55666777889999999999987653
No 33
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.43 E-value=0.016 Score=72.38 Aligned_cols=219 Identities=15% Similarity=0.199 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1376)
Q Consensus 322 ~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~ 401 (1376)
.+++-..+++.+..+.+|+...+.++..|+..+...+.+.+.|+.-+ ..+++.+++...++..+.+.+..+..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti-------~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI-------QGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55566677778888888888888888888888888888887776555 55556666666666666666666666
Q ss_pred HHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHH------HH
Q 000646 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAA------AT 475 (1376)
Q Consensus 402 ~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~------~~ 475 (1376)
...+....|-.....+......+.+++..+.. .|+.+...|.-++.+.+-+.+...+..... ..
T Consensus 156 eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~t----------kl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~ 225 (1265)
T KOG0976|consen 156 ELSAKAHDIFMIGEDLHDKNEELNEFNMEFQT----------KLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQE 225 (1265)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 55555555554442222222222223333322 233344444455555555555444433222 22
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE 555 (1376)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ 555 (1376)
++|+..+-.-|+-.-+.-++..+.-..-+.-.-..++--.+.++.....+..+..-+..+...++..+..++.++..+..
T Consensus 226 ~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 226 NTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333222222222233333333333333333333344444444455555555555555555555555555555444444
Q ss_pred HH
Q 000646 556 EK 557 (1376)
Q Consensus 556 EL 557 (1376)
-.
T Consensus 306 t~ 307 (1265)
T KOG0976|consen 306 TR 307 (1265)
T ss_pred HH
Confidence 33
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=0.022 Score=72.90 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=80.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHH
Q 000646 824 DSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVET 903 (1376)
Q Consensus 824 ~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~ 903 (1376)
+-|+. +++++.+.+.+++|..+++++.-+...-.++.++...+..++..+.....+...+.. +
T Consensus 666 rLe~~---k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~--------------e 728 (1200)
T KOG0964|consen 666 RLELL---KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKR--------------E 728 (1200)
T ss_pred HHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------H
Confidence 34555 999999999999999999999999999999999999999998888888887666654 4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 904 NNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 904 k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
.+...++...+++.+.--.-..+.+.-.+.+...+...+-.++
T Consensus 729 ~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el 771 (1200)
T KOG0964|consen 729 LNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESEL 771 (1200)
T ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455555566666666666566666666666666666655555
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.36 E-value=0.00044 Score=78.05 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHH
Q 000646 542 KLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQ 621 (1376)
Q Consensus 542 klskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~~rqrs~eLeell~ 621 (1376)
++..++.++......+..+...+..........+..+..++.++..+++.+....+.+.....++.............+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666655555544444443333232
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 622 TSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMAN 701 (1376)
Q Consensus 622 ~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ 701 (1376)
.+..+......++..++..+..++. .+...+.++......+..+...+.+....++.+...+..++..|....
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~-------~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKR-------RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 2223332233333333333322222 223333333333333444444444444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 702 DKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1376)
Q Consensus 702 ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1376)
..+..|..+...+......++..+..+..+|.+++...+..-..+..+...++.++.+|...
T Consensus 155 ~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666667777777777777777777766666666666666666655544
No 36
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.35 E-value=0.022 Score=70.44 Aligned_cols=72 Identities=28% Similarity=0.321 Sum_probs=50.9
Q ss_pred HhccchHHHHHHHHHhHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 000646 475 TASQRNLELEDIIRASNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKL 543 (1376)
Q Consensus 475 ~~~qk~~EL~~qi~~~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekl 543 (1376)
++|++|..|--|+..++.++-+...++ ..|+.++.+++.++..+-+++..-. .=+-|+|..+...+
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TT---rPLlRQIE~lQ~tl 653 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETT---RPLLRQIEALQETL 653 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cHHHHHHHHHHHHH
Confidence 788888888888888888888877776 8899999999999988877765321 22234555554444
Q ss_pred HHHHHH
Q 000646 544 SQLSTA 549 (1376)
Q Consensus 544 skLq~E 549 (1376)
.+....
T Consensus 654 ~~~~ta 659 (961)
T KOG4673|consen 654 SKAATA 659 (961)
T ss_pred hhhhhH
Confidence 444333
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.32 E-value=0.00047 Score=77.83 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHH
Q 000646 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELE 456 (1376)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~ 456 (1376)
.+...+.....++..+...|.........++..+..|...+..+.+.++..+..|..+ ..-|..+...-.+.+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~-------~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEA-------TEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH-------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555544444443333333 333333334444555
Q ss_pred HHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 000646 457 LKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREV 536 (1376)
Q Consensus 457 ~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei 536 (1376)
.-++.|+.....++ +.|+.+-..+..++..+............++..++..+.....++..++..+
T Consensus 78 r~~k~lE~r~~~~e--------------eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 78 RARKVLENREQSDE--------------ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 55666665555555 5566666666666666666667777777778888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000646 537 REFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1376)
Q Consensus 537 ~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~~r 610 (1376)
..+...+..+.+.+..++..-..+..+...|...|..|...++....|...++..+..|...+...+..+...+
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888877777777444444333
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.20 E-value=0.11 Score=72.19 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHH
Q 000646 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL 917 (1376)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~ 917 (1376)
+..|+.++..-..++..+.-.+.++.++...++.+......+...+.++..++..+.-....=.+. ++-++-++|+..
T Consensus 991 e~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~--~~~~~~~~l~~~ 1068 (1486)
T PRK04863 991 RQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEE--RARARRDELHAR 1068 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHH--HHHHhHHHHHHH
Confidence 344555555555555666666666666666666666666666666666666665554433332222 222233566666
Q ss_pred HHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 918 LDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 918 l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
|....+-+..+...+-.-...|+.|+..+
T Consensus 1069 l~~~~~~~~~~~~~~~~re~EIe~L~kkL 1097 (1486)
T PRK04863 1069 LSANRSRRNQLEKQLTFCEAEMDNLTKKL 1097 (1486)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555555555555555444
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.19 E-value=0.056 Score=68.67 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000646 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1376)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1376)
+|......+..+......++..+..+...+..|....+.-..........| ..++|.|-+...
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y-----------------~~~rk~ll~~~~ 161 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLY-----------------RELRKSLLANRF 161 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhcCc
Confidence 455555555555555555555666665555555555444444444443333 345788888888
Q ss_pred hhHHHHHHhccchHHHHHHHHH-----hHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 000646 468 ETGAAAATASQRNLELEDIIRA-----SNEAAEEAKSQLRELEPRFIAAEQRSVE 517 (1376)
Q Consensus 468 ~he~~~~~~~qk~~EL~~qi~~-----~~~~~Ek~k~~l~~l~~~~~~~Ekk~ke 517 (1376)
..|.++..+-++...++..+.+ ..+...+|+..+..+......++.....
T Consensus 162 ~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 162 SFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877 4444555555555555444444444433
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.19 E-value=0.0052 Score=75.91 Aligned_cols=232 Identities=13% Similarity=0.193 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000646 335 QAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1376)
Q Consensus 335 ~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~ 414 (1376)
.+..-+++..+..+.+...|.+...++.++..++++-...+...+..+......+..++.++..++..+..+++.+.+|.
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666667777777777777887777888888899999999999999999999999999999999999
Q ss_pred hhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch-----HHHHHHHHH
Q 000646 415 GNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN-----LELEDIIRA 489 (1376)
Q Consensus 415 s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~-----~EL~~qi~~ 489 (1376)
.+...|...+..+...++.--..+...+. .+..|+..|+=.-..|+..+.+.+-++ ....+.+..
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n----------~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLLRVDLQN----------RVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 99999988888888777765444444444 566677777777777887777777666 223333333
Q ss_pred -hHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 490 -SNEAAEEAKSQL-RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY 567 (1376)
Q Consensus 490 -~~~~~Ek~k~~l-~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~ 567 (1376)
++.++...+.+- ......+.+.+.. +...++.++....-..-..+...+.+..++..+..+...+..++.....+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L 322 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSAL 322 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhH
Confidence 333333333333 1122222322222 23344444444444444444444555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 000646 568 KDKITQLELILN 579 (1376)
Q Consensus 568 q~kIs~LEsqLk 579 (1376)
.+.|..|..++.
T Consensus 323 ~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 323 EKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHhhhh
Confidence 555544444433
No 41
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.15 E-value=0.062 Score=67.55 Aligned_cols=155 Identities=23% Similarity=0.218 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhh--hhhhhhhhhhhhhchHHHHHHH
Q 000646 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDEN--FCKTDSLLSQALANNAELELKL 459 (1376)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e--~~K~e~~lsq~~~~~~El~~~~ 459 (1376)
......++..++.++..++......+....+.-..+..-....++|...|...... .+..++ |+..++
T Consensus 29 ~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~----------e~~k~r 98 (522)
T PF05701_consen 29 VKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDS----------ELAKFR 98 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHhHHH
Confidence 34445566666667777777777777666666666666666666666666665543 222233 444433
Q ss_pred -hcHHHHhhh-----hHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000646 460 -KSLEEQHNE-----TGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1376)
Q Consensus 460 -k~lee~~~~-----he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1376)
+.++..... ....+..++.+|..--.-|+.++.-+++.+..+..+-..+..+..+......-......++.++.
T Consensus 99 ~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~ 178 (522)
T PF05701_consen 99 AKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELS 178 (522)
T ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223222111 12234455666655555556666666666666655555555555555555444555555555555
Q ss_pred HHHHHHHHHHHHH
Q 000646 534 REVREFSEKLSQL 546 (1376)
Q Consensus 534 rei~eLeeklskL 546 (1376)
.+|..+.+.+...
T Consensus 179 ~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 179 KEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444433
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.15 E-value=0.14 Score=71.23 Aligned_cols=130 Identities=21% Similarity=0.355 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000646 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1376)
Q Consensus 706 eL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~ 785 (1376)
.+...+..++.....+..++...+.++...+..+..+...+.....+....+..|+..|++-....+.+-...+ ..+.
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~--~~l~ 1066 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--DELH 1066 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH--HHHH
Confidence 45555555555555555666666666666666666666666666666666777777778777777766655544 5555
Q ss_pred HHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 786 RVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKY 855 (1376)
Q Consensus 786 ~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~ 855 (1376)
..|-.-+++++.+. -..+....|...|.++|++++..++.+...+..+..+|
T Consensus 1067 ~~l~~~~~~~~~~~------------------~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W 1118 (1486)
T PRK04863 1067 ARLSANRSRRNQLE------------------KQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGW 1118 (1486)
T ss_pred HHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665 11233334444555666666666655555555555433
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.14 E-value=0.0078 Score=74.41 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=104.8
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000646 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1376)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1376)
|+...++.|++.+..+. .++-.|..+..-+..++..+...+........+...+..-++.++.+..-+.
T Consensus 93 El~~ar~~l~e~~~~ra-----------~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k 161 (546)
T KOG0977|consen 93 ELATARKLLDETARERA-----------KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK 161 (546)
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Confidence 88888888888766655 4555555566666666777767777777788888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000646 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1376)
Q Consensus 534 rei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele 593 (1376)
+.+..+.+.+..++.++..+...|..+...+.+.......+++..+.|-.++.++.....
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999999999999888888888888888888887775554
No 44
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.14 E-value=0.071 Score=67.75 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000646 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1376)
Q Consensus 303 aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL 382 (1376)
..+.++...++..+.-...+...|..+..+...-+..+..+......++-.+-.....+...-..|+.. |
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~----------l 174 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQ----------L 174 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHH----------H
Confidence 667777777777777777777777777777777777777777777777776666666655555555333 3
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHH
Q 000646 383 KTQEAQVSNVN-----EELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKL 431 (1376)
Q Consensus 383 ~e~eae~~eL~-----eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL 431 (1376)
......|.... .+...++.-...+...+.+|..-|..+|....++...+
T Consensus 175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~ 228 (569)
T PRK04778 175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL 228 (569)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332 34556677777888888888888888888887777766
No 45
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.13 E-value=0.063 Score=66.96 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000646 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA 851 (1376)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea 851 (1376)
+.-..-..||..+-++|+.+.=+-.++. +--.++-.+ +.+|. -++.+.-=.|+++|..|+.-..+.+-.
T Consensus 464 ~~eq~yskQVeeLKtELE~EkLKN~ELt----~~~nkLslE-kk~la------QE~~~~~~elKk~qedi~~~k~qee~~ 532 (786)
T PF05483_consen 464 ESEQHYSKQVEELKTELEQEKLKNTELT----VNCNKLSLE-KKQLA------QETSDMALELKKQQEDINNSKKQEEKM 532 (786)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655555554 111122111 11110 112222234566777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000646 852 AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSA 921 (1376)
Q Consensus 852 ~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~ 921 (1376)
-+....|...--+++.. +++.++++....+++..++.-+....-...-+..+.+..|.-|...++..
T Consensus 533 ~kqie~Lee~~~~Lrne---les~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~L 599 (786)
T PF05483_consen 533 LKQIENLEETNTQLRNE---LESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNL 599 (786)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666666665443 45777777777777766554444333334444444444455555554443
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.12 E-value=0.066 Score=66.54 Aligned_cols=54 Identities=24% Similarity=0.459 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1376)
Q Consensus 539 LeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1376)
+......+......+..++..+.....+....|..|+..+..+..+..+.+..+
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~ 243 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKEL 243 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444444443333333
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.11 E-value=0.018 Score=67.23 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1376)
Q Consensus 516 keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1376)
..+-.....+...++.+...+.++..++.........++.++..+...+.........|+..+..+...+.++....
T Consensus 64 d~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 64 DDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 33333344444444444445555555555555555555555555555555555555555555555555555554443
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.09 E-value=0.073 Score=66.16 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHhhcccchhhhhHHHHHHH
Q 000646 808 ESEMKLQDALANITSRDSEAKSFSEKLKN 836 (1376)
Q Consensus 808 k~E~~L~eal~~~~~~~~Ea~~l~k~L~~ 836 (1376)
+|-..++.+=++.-..+.|++-|-.+|.+
T Consensus 375 ~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 375 KLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555443
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.99 E-value=0.029 Score=65.58 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=58.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 498 KSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSER--------EVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1376)
Q Consensus 498 k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~er--------ei~eLeeklskLq~EL~elE~ELeele~klee~q~ 569 (1376)
|..|..|...|+.+=.+-..|+.+...|..++..... ....|...+..++..|.....+...+...+..+..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4556666666666655555555555555555544442 33445555666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.+..+.............++.++..++..+..
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 66666666555555555555555555544444
No 50
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.97 E-value=0.16 Score=65.71 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchh--------------hhhHHHHHHHH
Q 000646 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSE--------------AKSFSEKLKNL 837 (1376)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~E--------------a~~l~k~L~~l 837 (1376)
.-.+++..-++.|+..+.....+..++..+.--+....+. |++..++..+.-++ +..+......+
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek-l~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el 486 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK-LLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEEL 486 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777788878888877777777333333222221 22222222222111 22222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHH
Q 000646 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL 917 (1376)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~ 917 (1376)
..+||.+-.-+....--...+.+....+.+.+....+..+...+++-++...++++..+|..|....-.|..- .+=...
T Consensus 487 ~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~ 565 (1195)
T KOG4643|consen 487 LNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGAL 565 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 4455555555555555556677777777777778888888888888889988899999999998888888764 444555
Q ss_pred HHHHhhhHHHHHHHHHhhhccHHHHH
Q 000646 918 LDSAISEKEATGQQLASHMNTVTELT 943 (1376)
Q Consensus 918 l~~~~~e~e~~~e~l~~~~~~~~~L~ 943 (1376)
|+-..++++.-...+++-+....-|+
T Consensus 566 LEq~~n~lE~~~~elkk~idaL~alr 591 (1195)
T KOG4643|consen 566 LEQNNNDLELIHNELKKYIDALNALR 591 (1195)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555556665555555555444333
No 51
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.96 E-value=0.13 Score=64.61 Aligned_cols=149 Identities=22% Similarity=0.263 Sum_probs=105.6
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH----HhhhhhhHHHHHHHHH
Q 000646 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGK-------YALLKEELDSYFIK----VTSLESTNEELQRQVV 884 (1376)
Q Consensus 816 al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k-------~~~l~~Ele~~~~~----l~~~E~~~~~~e~e~~ 884 (1376)
.|-.++.+=+=|. +++.+++|.|----.-+.-.... ...+.+||.++++. .+.+...-.-+++++.
T Consensus 430 RL~sL~~RlSyAv---rrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~ 506 (739)
T PF07111_consen 430 RLPSLSNRLSYAV---RRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVG 506 (739)
T ss_pred HHHHHhHHHHHHh---cccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566666777777 89999999885433222222211 23677888887773 3444566778889999
Q ss_pred HHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHH
Q 000646 885 EANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAE 964 (1376)
Q Consensus 885 e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~ 964 (1376)
++.+ .+.++--.|......|+..+.+-++.+.+.......+...+..+......|..+|++
T Consensus 507 ~ArE---qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~---------------- 567 (739)
T PF07111_consen 507 RARE---QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ---------------- 567 (739)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------
Confidence 9888 455666678888899999999888888888888888888888887777777777711
Q ss_pred HHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHHH
Q 000646 965 IQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKS 997 (1376)
Q Consensus 965 ~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~~ 997 (1376)
+-+.-.+.|+.|+.++|+....
T Consensus 568 -----------QQ~~y~~alqekvsevEsrl~E 589 (739)
T PF07111_consen 568 -----------QQEVYERALQEKVSEVESRLRE 589 (739)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456788888887776555
No 52
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.90 E-value=0.27 Score=66.06 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=152.7
Q ss_pred hhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhhhH-HHHHhCCCHHHHHHH------------------
Q 000646 248 TANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISA-IQEELGLSKLQLLDL------------------ 308 (1376)
Q Consensus 248 ~~~~~~KtlE~ql~~l~~e~~~~~~~~~~~~k~ee~ls~~~~eL~~-~~e~lglsKaiL~~v------------------ 308 (1376)
.++..|||+||.+..+ ..|.+.++|.+|+++|. +|.++|||||||.||
T Consensus 104 ~~~~~~ktles~~~~~-------------~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcHQEdS~WPLsEp~~L 170 (1294)
T KOG0962|consen 104 RTKMEFKTLESVIWAI-------------NDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCHQEDSTWPLSEPKNL 170 (1294)
T ss_pred HHHHHHHHHhhhheee-------------ecCccccccchhhhhhHHHHHhcCCcHHHHhhhheecccCCCCCCCChHHH
Confidence 4677889999999999 48999999999999999 999999999999999
Q ss_pred HHhh-------------hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 309 EQRF-------------SSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEV 372 (1376)
Q Consensus 309 ekkf-------------~~~k~l~k~~~~el~~~K~~~~~lked~~~le---~~~~eL~~~l~~k~~El~~l~~kleee~ 372 (1376)
++|| ++++++++++..+++..+..+.|++-.+.+.. ..+......+.....++..+..++
T Consensus 171 KkkfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~---- 246 (1294)
T KOG0962|consen 171 KKKFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENEL---- 246 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 8888 99999999999999999999999998888886 677777788888888887777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH-HhHhhhHHHHHHHhhhHhhh
Q 000646 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA-RMKELCSELEEKLRNSDENF 438 (1376)
Q Consensus 373 ~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~-eL~e~~eeLEeeL~~~~~e~ 438 (1376)
.........|+..-..+..+......+...+..+.+++..+...|. ..+.++..|...+...+..+
T Consensus 247 ~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~ 313 (1294)
T KOG0962|consen 247 GPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERL 313 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHH
Confidence 8888888999999999999999999999999999999999998887 56666777777666666533
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.87 E-value=0.18 Score=63.15 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhh
Q 000646 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANI 820 (1376)
Q Consensus 741 ~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~ 820 (1376)
.+..+-...+.....+--++... -+.+....+...+.+...+.-=+..+--|.++.++.+.+..+-+
T Consensus 496 kLslEkk~laQE~~~~~~elKk~---qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~---------- 562 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQ---QEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE---------- 562 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 44444334444443333344433 44455555555555444444333334446777744443333221
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhh
Q 000646 821 TSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1376)
Q Consensus 821 ~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L 900 (1376)
|+. -+|.+-+.-....+-++....+.+..++..+.-+.-.++.-...+++++++-.-+-. ..++-
T Consensus 563 -----Ev~---~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKK-------k~~aE 627 (786)
T PF05483_consen 563 -----EVK---CKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKK-------KITAE 627 (786)
T ss_pred -----HHH---HHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHH
Confidence 222 223333332333333333333444444444444444444555556666555444443 33444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 901 VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 901 ~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
......|+.+|+.|+.+++.+..-.++..+++.+-.-+=...+..|
T Consensus 628 ~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L 673 (786)
T PF05483_consen 628 SKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEEL 673 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5556678899999999998888777777777766544444444444
No 54
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.81 E-value=0.0001 Score=95.35 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHH
Q 000646 1099 KLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVIS 1137 (1376)
Q Consensus 1099 kLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~ 1137 (1376)
....++..|+.++..+..-+.+|..-|-....+-..+|.
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778888888888888887777777766666663
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.79 E-value=0.34 Score=63.89 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 000646 769 DVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHE 803 (1376)
Q Consensus 769 e~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e 803 (1376)
.+...+..|.+.++.....|.+..+.+..-++...
T Consensus 440 ~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 440 HIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 35667788888888888888888766666554443
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.75 E-value=0.41 Score=63.52 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHH
Q 000646 385 QEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEE 464 (1376)
Q Consensus 385 ~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee 464 (1376)
....+......+...+..+..++..+.++...+..+...... +.-.+..+..+++.|++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~---------------------~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN---------------------AADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhHHHHHHHHHH
Confidence 445566666666666666666666666666443333222111 22223355566677766
Q ss_pred HhhhhHHHHHHh---ccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 000646 465 QHNETGAAAATA---SQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSE 541 (1376)
Q Consensus 465 ~~~~he~~~~~~---~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLee 541 (1376)
.+..--+.++.. +..+.++..+|++........-..+..|+..+....+..+.+-.-......+.......+.++.+
T Consensus 551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544444433 33337777777775444444444444455444444444444444444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000646 542 KLSQLSTALKEVEEEKKQL 560 (1376)
Q Consensus 542 klskLq~EL~elE~ELeel 560 (1376)
.++.+++.+.....++...
T Consensus 631 ~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 631 EISSLEETLKAGKKELLKV 649 (1317)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 5555555554444444333
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.74 E-value=0.38 Score=62.91 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHH
Q 000646 850 EAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQ 915 (1376)
Q Consensus 850 ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lq 915 (1376)
++...+.+..+|.++++..+..+.+.--++++....+.+..+...++-..-..+.+.|=-.|.+..
T Consensus 1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677777777777777777777777776666666555544444444444444444443333
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.68 E-value=6.9e-05 Score=96.96 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1376)
Q Consensus 508 ~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele 561 (1376)
...+......+..++..++.++..+..++..+...+..++..+......+.+..
T Consensus 159 ~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e 212 (722)
T PF05557_consen 159 LEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAE 212 (722)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444333333333
No 59
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.66 E-value=0.49 Score=62.01 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcH
Q 000646 404 EALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSL 462 (1376)
Q Consensus 404 e~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~l 462 (1376)
..--.+|.+|...|.+.-.++..++.-|..+..+.+..+.+++.|--.++.-+..+...
T Consensus 1507 p~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~a 1565 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQA 1565 (1758)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34456677777777777777777777777777777777766666655555554444433
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.64 E-value=0.44 Score=60.95 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=111.4
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 000646 812 KLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1376)
Q Consensus 812 ~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~ 891 (1376)
.|+....+.-.-.+|-..|.+++---...|-.+|.+=...+--+...--||.+.++.|.++-..+.+++..+.-+.--..
T Consensus 238 ~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~e 317 (617)
T PF15070_consen 238 HLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGE 317 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCC
Confidence 44443333334445555566665543333555553322222333566789999999999999999999999986544321
Q ss_pred cc----cch---------------------hhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 892 NS----SSE---------------------NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 892 ~~----~~~---------------------~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
+. .+. .+.+......++.+-+.|...|.+-...+..+...+..+.......+..+
T Consensus 318 g~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~ 397 (617)
T PF15070_consen 318 GDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAP 397 (617)
T ss_pred CcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCc
Confidence 11 100 02234556666777777778887777777666666665555544443332
Q ss_pred -----HHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHHH
Q 000646 947 -----SRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIK 996 (1376)
Q Consensus 947 -----~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~~ 996 (1376)
|-+.|.|.|.-..++...+-+.+.|+. +-||.++...||-.+.
T Consensus 398 ~~~~dsV~~E~h~aLq~amekLq~~f~~~~~e-------~adl~e~~e~le~~~~ 445 (617)
T PF15070_consen 398 GTGGDSVPGETHQALQEAMEKLQSRFMDLMEE-------KADLKERVEKLEHRFI 445 (617)
T ss_pred ccCCCCCCccchHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHH
Confidence 235688888877888888888887777 7788888887776553
No 61
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.54 E-value=0.66 Score=60.43 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=81.1
Q ss_pred hcHHHHhhhhHHHHHHhccch--HHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH----
Q 000646 460 KSLEEQHNETGAAAATASQRN--LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE---- 533 (1376)
Q Consensus 460 k~lee~~~~he~~~~~~~qk~--~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e---- 533 (1376)
+.|-+.-.=-++++.-+|.++ ..|+.+|=+.++++-....+.+..+...+.+...+..|.-+-..+.....-..
T Consensus 274 ~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se 353 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSE 353 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhc
Confidence 334444444455666666666 66777777766666666666655555555555555554444433322222111
Q ss_pred ----------HHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 534 ----------REVREFSE-KLSQLSTALKEVEEEKKQL-HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 534 ----------rei~eLee-klskLq~EL~elE~ELeel-e~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.+...|+. +.=++--+...+-..+.++ .+.++....+...+++.-+.++-.+..|++.++.+..++.+
T Consensus 354 ~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~e 433 (1195)
T KOG4643|consen 354 NEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAE 433 (1195)
T ss_pred chhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHH
Confidence 11111111 0000111111222223332 22445555566666676677788888888888888887777
Q ss_pred HHHHhhhhhhhhHHH
Q 000646 602 DEDRANMSHQRSIEL 616 (1376)
Q Consensus 602 ~e~rak~~rqrs~eL 616 (1376)
.++..+.+......+
T Consensus 434 led~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 434 LEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666555444333
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.32 Score=61.41 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=81.2
Q ss_pred HHHHHHhccchHHHHHHHHH----hHHHHHHHHHHHhhhhhhHHHHHHHHHH-HH-HHHHHHHhhhhhhHHHHHHHHHHH
Q 000646 470 GAAAATASQRNLELEDIIRA----SNEAAEEAKSQLRELEPRFIAAEQRSVE-LE-QQLNLVELKSSDSEREVREFSEKL 543 (1376)
Q Consensus 470 e~~~~~~~qk~~EL~~qi~~----~~~~~Ek~k~~l~~l~~~~~~~Ekk~ke-LE-~Ql~elq~K~~e~erei~eLeekl 543 (1376)
..+-..-|++..||+-+++- =.++.|.-|..+..-+.++.++++.++. .| ....++..+...-...+-.+..+.
T Consensus 360 rerqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~ 439 (1118)
T KOG1029|consen 360 RERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKK 439 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444456666777777766 4566667777776666666665554432 11 122344444444444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhh
Q 000646 544 SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1376)
Q Consensus 544 skLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak 607 (1376)
..+..++..+...+.++..++.+....+......+..+...+.-.-.++..+..+|.+.+.+.-
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666666666666665555555555555555555444333
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.91 Score=59.09 Aligned_cols=186 Identities=13% Similarity=0.221 Sum_probs=89.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000646 660 KKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1376)
Q Consensus 660 KK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~L 739 (1376)
.++..+...+..+...+.+...+|+.+....+..++.........+.|...+..+...+..++..+.- ....|
T Consensus 678 ~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~-------k~~~L 750 (1200)
T KOG0964|consen 678 SELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP-------KGKEL 750 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-------HHHHH
Confidence 33333333444444444444444444444444444433333333334444444444444444444444 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH--
Q 000646 740 ELLRNDLNMTQERLESIEKDLKAAGLR--ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-- 815 (1376)
Q Consensus 740 e~LR~El~l~q~k~eslE~~l~~~~~~--eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e-- 815 (1376)
..++..+.-..+...+++.++-.-=+. .-+-.+.++.+...|+.+...|...++.|.++. ..+--+|+-|+.
T Consensus 751 e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~----~rk~~le~~l~~kL 826 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE----TRKTALEANLNTKL 826 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444444444444444444433221000 122356688888999999999988888888877 555555544443
Q ss_pred ------HHHhhcccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 816 ------ALANITSRD-SEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLK 859 (1376)
Q Consensus 816 ------al~~~~~~~-~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~ 859 (1376)
.....+.-+ ++-. -.|...+.++-.+.-.++.+...+.++.
T Consensus 827 ~~r~~~l~~ei~~~~d~~~~---~el~~~~~el~~~~~~~e~~~~el~~l~ 874 (1200)
T KOG0964|consen 827 YKRVNELEQEIGDLNDSSRR---SELELEKSELESEEKRVEAAILELKTLQ 874 (1200)
T ss_pred HhhhhHHHHHhhhcccccch---hhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 211111111 1111 2344555555555555555555555333
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.39 E-value=0.054 Score=68.24 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhh
Q 000646 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1376)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1376)
.+..+..+++.+......+...+..+...+..+......++..|..+...+.+.+.
T Consensus 214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~ 269 (562)
T PHA02562 214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666655666666666555555554
No 65
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.37 E-value=1.3 Score=59.65 Aligned_cols=140 Identities=21% Similarity=0.291 Sum_probs=61.9
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHHhhh
Q 000646 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRF----IAAEQRSVELEQQLNLVELKS 529 (1376)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~----~~~Ekk~keLE~Ql~elq~K~ 529 (1376)
++..+...+.. .......+....+....+...+......++.+...+..+...+ ...+.+...+...+..++.++
T Consensus 299 e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 377 (908)
T COG0419 299 EIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377 (908)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 3333334444444444444455555555555555554442222 222222333333334444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000646 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRI 594 (1376)
Q Consensus 530 ~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~ 594 (1376)
.........+...+..+...+......+......+.........+...+..+...+..++.....
T Consensus 378 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333444444444455444444444444444444444444444444444444444444443
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.33 E-value=0.95 Score=57.50 Aligned_cols=389 Identities=15% Similarity=0.171 Sum_probs=185.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 000646 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE---KKQLHDQMNDYKDKITQLELIL 578 (1376)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~E---Leele~klee~q~kIs~LEsqL 578 (1376)
.+......++..++..+.+-..+++.+..+..+.-..+...+.++...+...... ++.-+.........+.+|.+++
T Consensus 162 ~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~ 241 (1265)
T KOG0976|consen 162 HDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQK 241 (1265)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555566666666666666666677777776666777777776666544332 3333333334444455555555
Q ss_pred HHHh------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 579 NQSN------TRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELE 652 (1376)
Q Consensus 579 k~Lq------srireLEEele~L~EeLeE~e~rak~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELE 652 (1376)
..+. +.+++.-..+..+...|.+ -...|+.+-.-.+..+.+.++...-.+..++.+.
T Consensus 242 q~ltp~rk~~s~i~E~d~~lq~sak~ieE-----------------~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 242 QTLTPLRKTCSMIEEQDMDLQASAKEIEE-----------------KMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred hhhhhHhhhhHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 4332 2233333333322222222 1112221111222233333332222222222222
Q ss_pred HHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 653 EQISKL-----------EKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKL 721 (1376)
Q Consensus 653 eqis~L-----------EKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~L 721 (1376)
+..... .-....+......++-.+-..+...+.|......+++.-..+-...+.++..+..++..+..|
T Consensus 305 qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL 384 (1265)
T KOG0976|consen 305 QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSL 384 (1265)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 222221 222222233333333333333333444444444555544444444445554444444444444
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000646 722 QDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESL 801 (1376)
Q Consensus 722 E~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~ 801 (1376)
-..-.+.++|+.++-..+= .+.+.+-+ +| ...+.+..++..+.-|++.|-.+-.+-+-...|
T Consensus 385 ~~l~aerqeQidelKn~if------~~e~~~~d-he-----------~~kneL~~a~ekld~mgthl~mad~Q~s~fk~L 446 (1265)
T KOG0976|consen 385 LELQAERQEQIDELKNHIF------RLEQGKKD-HE-----------AAKNELQEALEKLDLMGTHLSMADYQLSNFKVL 446 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhh------hhhhccch-hH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH
Confidence 4444444444443333221 11222222 22 134455556666778888888888888888866
Q ss_pred HHHhhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000646 802 HESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE 878 (1376)
Q Consensus 802 ~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~ 878 (1376)
++...-++++-+.. -++.+- +--..- ++-|+...|...+.....--.+|+.-|+.|+-..+..
T Consensus 447 ke~aegsrrraIeQcnemv~rir-~l~~sl---e~qrKVeqe~emlKaen~rqakkiefmkEeiQethld---------- 512 (1265)
T KOG0976|consen 447 KEHAEGSRRRAIEQCNEMVDRIR-ALMDSL---EKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLD---------- 512 (1265)
T ss_pred HHhhhhhHhhHHHHHHHHHHHHH-HHhhCh---hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 66666666654443 222221 111111 3446777777777777777778999999998877665
Q ss_pred HHHHHHHHHhhhccccchh-hhhHHHHHHhHHHH----------HHHHHHHHHHhhhHHHHHHHHHhhhccH
Q 000646 879 LQRQVVEANNKANNSSSEN-ELLVETNNQLKSKV----------AELQELLDSAISEKEATGQQLASHMNTV 939 (1376)
Q Consensus 879 ~e~e~~e~~~~~~~~~~~~-~~L~~~k~~Le~~i----------~~Lqe~l~~~~~e~e~~~e~l~~~~~~~ 939 (1376)
..+++.+++.+-++.+.-. +--..+.+.-.+-| ..|=.....-+.+.-.-+.++++.+..+
T Consensus 513 yR~els~lA~r~ag~h~adssqrdselrsAkktIqevkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a 584 (1265)
T KOG0976|consen 513 YRSELSELAHRKAGDHPADSSQRDSELRSAKKTIQEVKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARA 584 (1265)
T ss_pred HHHHHHHHhhccCCCCCCCCCcccHHHHHHHHHHHhccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHH
Confidence 4556666666554433322 22222223223333 2222333333444444456667666654
No 67
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.31 E-value=5.2e-05 Score=97.94 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 000646 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1376)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~ 891 (1376)
.+|-.|..||-+++..+++...+...+.-|+.++.+++.++++.++.+..+++.+.+...
T Consensus 363 ~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~e 422 (713)
T PF05622_consen 363 SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNE 422 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888899999999999999999999999888887776443
No 68
>PRK11637 AmiB activator; Provisional
Probab=97.28 E-value=0.13 Score=63.13 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhH
Q 000646 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1376)
Q Consensus 342 ~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~ 421 (1376)
.++..+.++..++.....++..+..++.+-... +.....++..+...+.........++..|..+...|..+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~-------l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ-------LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665555555555555555333333 3333333333333333333333333333333333333333
Q ss_pred hhhHHHHHHHh
Q 000646 422 ELCSELEEKLR 432 (1376)
Q Consensus 422 e~~eeLEeeL~ 432 (1376)
.........+.
T Consensus 117 ~~l~~~~~~l~ 127 (428)
T PRK11637 117 QQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 69
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=1.2 Score=57.13 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=51.8
Q ss_pred HHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000646 1031 EELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQ 1110 (1376)
Q Consensus 1031 ~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~q 1110 (1376)
.-+......+..++......+.-+.+.+.++...+.+|..++. ..+....++...+..+...+..+.-.
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e-----------k~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE-----------KSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555565666666666777777766632 12224445555566666666666666
Q ss_pred HHHHHHHHhhhhHHHHHHHhH
Q 000646 1111 ISAIMEENNSLNETYQNAKNE 1131 (1376)
Q Consensus 1111 ke~aeeE~~~L~~~~e~~~kE 1131 (1376)
...+++++.+|+-+++...+.
T Consensus 603 ~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 677777777776555555544
No 70
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.21 E-value=0.88 Score=58.96 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=46.4
Q ss_pred hHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000646 1047 LVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1376)
Q Consensus 1047 ~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1376)
....+..+..++..++.++.+|..++..+ .+...+..+......++..+.+++..+..+..++......+..+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~--~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTI--PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889999999999999998622 22233455555555555555555555555555555555555554
No 71
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.13 E-value=0.95 Score=53.49 Aligned_cols=261 Identities=18% Similarity=0.256 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHH
Q 000646 655 ISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLN-AAADEKRKLQDTSNGYNEKLA 733 (1376)
Q Consensus 655 is~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqle-elek~k~~LE~EieElkeqLe 733 (1376)
+..+.++...+.+........+.+...-.+.++.-|+.+...-.........+..... ........+...+.+++..++
T Consensus 45 ~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~e 124 (309)
T PF09728_consen 45 LKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQME 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444556666677666644444443222222221 224445667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHH
Q 000646 734 EAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKL 813 (1376)
Q Consensus 734 ElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L 813 (1376)
+-......+..+-..+..++..+=..-..+ +.-|....+...-++.-+.+-|+..+....... +.....-+.=|
T Consensus 125 e~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~---~k~~~~~~~~l 198 (309)
T PF09728_consen 125 EQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK---EKAKQEKEILL 198 (309)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHH
Confidence 777776677777777777777665555544 777777777666666555666655543322222 12222222223
Q ss_pred HH--HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q 000646 814 QD--ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1376)
Q Consensus 814 ~e--al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~ 891 (1376)
.+ ++..+.....+.. .||.-+-+...++|.-+.-.-..+.+.+.|++.+.-.+..+|..+..+.........-+.
T Consensus 199 ~~~~~~~~~~~~E~~Lr---~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 199 EEAAQVQTLKETEKELR---EQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33 3333333333333 444444444444444444455777899999999999999999999999999888888788
Q ss_pred cccchhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 000646 892 NSSSENELLVETNNQLKSKVAELQELLDSAISE 924 (1376)
Q Consensus 892 ~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e 924 (1376)
....+...+......+..++..|+.-+-..+++
T Consensus 276 ~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 276 EMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888888888888888888888877766653
No 72
>PRK11637 AmiB activator; Provisional
Probab=97.06 E-value=0.38 Score=59.15 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000646 386 EAQVSNVNEELD 397 (1376)
Q Consensus 386 eae~~eL~eELe 397 (1376)
+.++..+..++.
T Consensus 102 ~~ei~~l~~eI~ 113 (428)
T PRK11637 102 NKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 73
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.05 E-value=0.00035 Score=90.41 Aligned_cols=185 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000646 715 ADEKRKLQDTSNGYNEKLAEA-ENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATS 793 (1376)
Q Consensus 715 ek~k~~LE~EieElkeqLeEl-E~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~ 793 (1376)
...+.+|+.++..++...+.. ...+..+...+.........++..... ...+...++.+|+.+...|-...+
T Consensus 458 ~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~-------~~~~~~~lq~qle~lq~~l~~~~~ 530 (713)
T PF05622_consen 458 RERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENRE-------ANEKILELQSQLEELQKSLQEQGS 530 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556666666665544433 223334444444433333333332221 123344444445444444433333
Q ss_pred hhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 000646 794 RNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA-AGKYALLKEELDSYFIKVTSL 872 (1376)
Q Consensus 794 ~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea-~~k~~~l~~Ele~~~~~l~~~ 872 (1376)
+..... .++.+ |.+.++.+.....+-. +...+|.+++..+... ..++..|...|..--..+.+.
T Consensus 531 ~~~d~~----~lk~~----le~~~~~l~e~~~e~~-------~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~ 595 (713)
T PF05622_consen 531 KSEDSS----ELKQK----LEEHLEKLRELKDELQ-------KKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAM 595 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccHH----HHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhH
Confidence 332223 23333 3334443333333333 3334455544444333 344444444444333333333
Q ss_pred hh----hHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000646 873 ES----TNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSA 921 (1376)
Q Consensus 873 E~----~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~ 921 (1376)
+. ..+.+..-+..+..+.+....+...|-....-.+..|..|+..++..
T Consensus 596 eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~ 648 (713)
T PF05622_consen 596 EERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKS 648 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 31 23333444445555555544555555555555566667777666444
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.05 E-value=1.8 Score=55.20 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHH
Q 000646 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1376)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i 911 (1376)
..+..+..++...+.+..+....+..|..+-...+..|.........++..+.- .++-.-......-.......|
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek-----~nLPGlp~~y~~~~~~~~~~i 453 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK-----SNLPGLPEDYLDYFFDVSDEI 453 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444432211 244444455555666667888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhh-HHHhhHHHHHHH
Q 000646 912 AELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRD-IEANNLNEKVSV 990 (1376)
Q Consensus 912 ~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e-~~~keL~~kl~~ 990 (1376)
..|...|+..--+++.....+..+..+|++|.+.- ..--..+.+.|.+=+.++.= +.+-++...|..
T Consensus 454 ~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t------------~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~ 521 (560)
T PF06160_consen 454 EELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT------------EELIDNATLAEQLIQYANRYRSDNPEVDEALTE 521 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 99999999999999999999999999999998877 44455566666555544443 467778888877
Q ss_pred HHHHHHH
Q 000646 991 LEGQIKS 997 (1376)
Q Consensus 991 ~e~~~~~ 997 (1376)
++..-..
T Consensus 522 Ae~~F~~ 528 (560)
T PF06160_consen 522 AEDLFRN 528 (560)
T ss_pred HHHHHHh
Confidence 7765433
No 75
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.87 E-value=1.6 Score=51.69 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000646 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1376)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElk 729 (1376)
++..++...-.+...|...+..-......++.+++...+.+..++..-.....+...-...+-++......+..++..+.
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666777777777777777776666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 000646 730 EKLAEAENLLELLRN 744 (1376)
Q Consensus 730 eqLeElE~~Le~LR~ 744 (1376)
.++.-+++....|+.
T Consensus 293 ~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 293 KKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666665555543
No 76
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.86 E-value=3.5 Score=55.61 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 000646 857 LLKEELDSYFIKVTSLE 873 (1376)
Q Consensus 857 ~l~~Ele~~~~~l~~~E 873 (1376)
....++..+...+..+.
T Consensus 723 ~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 723 SRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 77
>PF13514 AAA_27: AAA domain
Probab=96.83 E-value=4.2 Score=56.02 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000646 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTV 1008 (1376)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~ 1008 (1376)
.+.++.+.....+...+..++..++..+..|+.++..-...
T Consensus 732 l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 732 LELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566678888888888888888888877665443
No 78
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.81 E-value=1.6 Score=50.86 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 348 ADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1376)
Q Consensus 348 ~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL 413 (1376)
..+...+..+.+...+++.++-+-......+.....+.+.+|.++......+......+-..+..+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444444444444444444444444444444444333333333333
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.77 E-value=0.99 Score=58.69 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 644 EKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQD 723 (1376)
Q Consensus 644 ~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~ 723 (1376)
.+.|..+++..+..|+.+++.-+..+..+..+...+..--..-..++..|-..|...+.+-..|...+..=+.-+-.|=.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566666666666666666666555555555544433201123345555555666666655666666666666777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 724 TSNGYNEKLAEAENLLELLRNDLNMTQERLES 755 (1376)
Q Consensus 724 EieElkeqLeElE~~Le~LR~El~l~q~k~es 755 (1376)
.+++-+.+|+.++..+-....|+..++.++..
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777766653
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.63 E-value=3.6 Score=52.56 Aligned_cols=168 Identities=23% Similarity=0.298 Sum_probs=97.5
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000646 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1376)
Q Consensus 303 aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL 382 (1376)
..+..++..++..+.-.+.+..+|..+..+...-+..+..+......++..+-.........-..+ ...+
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~L----------e~~L 170 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEEL----------EKQL 170 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHH----------HHHH
Confidence 566666666666666666666666666666666666666666656666555555555544444444 3334
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHH
Q 000646 383 KTQEAQVSNVNE-----ELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELEL 457 (1376)
Q Consensus 383 ~e~eae~~eL~e-----ELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~ 457 (1376)
......|..... +...++.-...+...+..|..-|..+|.....+...+-. .|..
T Consensus 171 ~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~--------------------ql~e 230 (560)
T PF06160_consen 171 ENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPD--------------------QLEE 230 (560)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHH--------------------HHHH
Confidence 444444444332 455567777777777888888888888877777665544 2222
Q ss_pred HHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 000646 458 KLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEP 506 (1376)
Q Consensus 458 ~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~ 506 (1376)
+.....+... ..-+=.|..+...|+.++..+..+...|..|..
T Consensus 231 L~~gy~~m~~------~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l 273 (560)
T PF06160_consen 231 LKEGYREMEE------EGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL 273 (560)
T ss_pred HHHHHHHHHH------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 2211111111 011222367777888888888777777766644
No 81
>PF13514 AAA_27: AAA domain
Probab=96.60 E-value=5.9 Score=54.68 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 000646 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNK 889 (1376)
Q Consensus 853 ~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~ 889 (1376)
.++..+...+..+...+..+......+...+..+...
T Consensus 550 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1111)
T PF13514_consen 550 ARLAQLRARLEEARARLARAQARLAAAEAALAALEAA 586 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666665555543
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.54 E-value=4.3 Score=52.29 Aligned_cols=64 Identities=27% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 496 EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ 559 (1376)
Q Consensus 496 k~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELee 559 (1376)
..|.+|.+|+-+|........++.+.+...+--..++...+..+...+..++..+..+..++..
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555555555544444444333333344444444444444444444333333333
No 83
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.49 E-value=0.25 Score=52.06 Aligned_cols=101 Identities=26% Similarity=0.363 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 491 NEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDK 570 (1376)
Q Consensus 491 ~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~k 570 (1376)
+.-.+.+-.....++...-.++.+...++.++..|+.|...++.++..+...+......+...+..... .+.+...
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhh
Confidence 333344444444555555555555566666666666666666666666666666665555544333222 2245555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 000646 571 ITQLELILNQSNTRSSELEEELRIT 595 (1376)
Q Consensus 571 Is~LEsqLk~LqsrireLEEele~L 595 (1376)
|..|+..+.....++....+.+..+
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444433
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.43 E-value=0.89 Score=59.10 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred HHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 000646 472 AAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSD 531 (1376)
Q Consensus 472 ~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e 531 (1376)
.+..+++.+..|+.-+..+...-+..|+.|..|+..+.+....+..+|.||.+.......
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455566777788888999999999999999999999999999999999999988765444
No 85
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.43 E-value=0.71 Score=51.03 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhh
Q 000646 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1376)
Q Consensus 373 ~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~ 438 (1376)
-.+..+...|.++...+.++..+...++.--..-++.+..+...-..||.......++++.+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555555555555555555555554433
No 86
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.42 E-value=6.4 Score=53.00 Aligned_cols=139 Identities=21% Similarity=0.213 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 778 EEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYA 856 (1376)
Q Consensus 778 ~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~-~l~k~L~~lq~qik~~q~~~~ea~~k~~ 856 (1376)
+.++-.++..|.+++.-|.-+. .+.-+++..+.- |.+-...--+.- .|-...+.+...+..+|.+++..-.+..
T Consensus 699 e~~~~e~~~~lseek~ar~k~e----~~~~~i~~e~e~-L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~ 773 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAE----NLLLEIEAELEY-LSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRL 773 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHH----HHHHHHHHHHHH-HhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677788888888887777777 444455554432 222111111111 1112223334445566777777777777
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHh
Q 000646 857 LLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAI 922 (1376)
Q Consensus 857 ~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~ 922 (1376)
++..||- ++...-...-.-++.....+++..=--.+..+|..+.+.++....-...++..|+..+
T Consensus 774 ~~~~eLs-sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~~leae~ 838 (1317)
T KOG0612|consen 774 SLQRELK-SQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQDQLEAEQ 838 (1317)
T ss_pred hhHHHhh-hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHH
Confidence 7888887 6666555544444555555554421112333455555555555455556677776666
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=2 Score=55.16 Aligned_cols=96 Identities=23% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000646 315 KEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNE 394 (1376)
Q Consensus 315 ~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~e 394 (1376)
.|.++..+-.++.-+++.+..++.....++..+.+......+...++..|..++ ..+..-...+-.....+...-+
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL----g~~~~~~~~~~q~~e~~~t~~e 737 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL----GIISSKQRDLLQGAEASKTQNE 737 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccchhhHHhHHHhccCChH
Confidence 445555566666666666666666666666666666666666666666666666 3222222222222223333334
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 000646 395 ELDKVSKEKEALEAAMADLT 414 (1376)
Q Consensus 395 ELe~l~~~ke~lE~~i~dL~ 414 (1376)
++..++.+...+...-.++.
T Consensus 738 el~a~~~e~k~l~~~q~~l~ 757 (970)
T KOG0946|consen 738 ELNAALSENKKLENDQELLT 757 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 88
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=5.6 Score=51.00 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000646 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1376)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1376)
.++.+-++++++++-|+.|-..-..++...+
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqkE 351 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQKE 351 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777776666555444443333
No 89
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.26 E-value=5.3 Score=50.44 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHH
Q 000646 912 AELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVL 991 (1376)
Q Consensus 912 ~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~ 991 (1376)
...--.|-..|+|.+.+-.|.+.+....=..-..|...---..+-.+..+ ...+.-.-..++++|...|.++
T Consensus 62 k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~--------~l~k~~~~~~e~~~lk~~lee~ 133 (629)
T KOG0963|consen 62 KMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAE--------LLNKQQKASEENEELKEELEEV 133 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHH--------HhhhhhhhhhhHHHHHHHHHHH
Confidence 44445566778888888888888777765555555221111111111111 1112112345677888888777
Q ss_pred HHHHHHH
Q 000646 992 EGQIKSY 998 (1376)
Q Consensus 992 e~~~~~~ 998 (1376)
++.+..|
T Consensus 134 ~~el~~~ 140 (629)
T KOG0963|consen 134 NNELADL 140 (629)
T ss_pred HHHHhhh
Confidence 7776553
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=6.5 Score=50.82 Aligned_cols=94 Identities=26% Similarity=0.356 Sum_probs=71.4
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccc
Q 000646 814 QDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNS 893 (1376)
Q Consensus 814 ~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~ 893 (1376)
..+++..++...++. ..+..|+.++-.++..+++.+..+.....|++.+.-++.+++--...+..++........ .
T Consensus 551 ~~~le~~kk~~~e~~---~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-~ 626 (698)
T KOG0978|consen 551 TQSLEMLKKKAQEAK---QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES-G 626 (698)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c
Confidence 336777777777777 778888888888888888888888888888888888888888877777777766655433 4
Q ss_pred cchhhhhHHHHHHhHHHH
Q 000646 894 SSENELLVETNNQLKSKV 911 (1376)
Q Consensus 894 ~~~~~~L~~~k~~Le~~i 911 (1376)
.++-..|.++.+.+++-+
T Consensus 627 ~s~d~~L~EElk~yK~~L 644 (698)
T KOG0978|consen 627 ASADEVLAEELKEYKELL 644 (698)
T ss_pred ccccHHHHHHHHHHHhce
Confidence 566778888888887644
No 91
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=5.3 Score=49.46 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHHHHHHHH
Q 000646 927 ATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQI 995 (1376)
Q Consensus 927 ~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~~~e~~~ 995 (1376)
..+-+++.+...|-+|.+++ ..-+...+.. ...++.+..+-.|..||-.+|..-
T Consensus 405 ~~a~k~~~a~~e~i~lk~ql------------~~l~~~~n~t---de~~~~e~evq~l~~kl~llekas 458 (772)
T KOG0999|consen 405 ILACKYAVAVDEMIQLKDQL------------KALYHQLNYT---DEKVQYEKEVQELVEKLRLLEKAS 458 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHhhccc---chhhhHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777 2222221111 122467777888888877666554
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.15 E-value=0.42 Score=50.31 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=66.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1376)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~L 581 (1376)
..|..-..++..+...++.++..+.......+.+|..|..+++.+..++..++..+..+...+..-....+..+ .+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HH
Confidence 34455566677777777777777877888888888888888888877777777777777777766665555444 56
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 000646 582 NTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 582 qsrireLEEele~L~EeLeE 601 (1376)
+-+|..|++++......+.+
T Consensus 79 ~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 66666666666644444443
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.95 E-value=4.9 Score=51.54 Aligned_cols=47 Identities=30% Similarity=0.289 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHH
Q 000646 896 ENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTEL 942 (1376)
Q Consensus 896 ~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L 942 (1376)
.-..+..+...|.+.+.++.+++++...+.......++....+++.|
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444445555555555555555555555544444444433
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.94 E-value=0.8 Score=52.01 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=91.6
Q ss_pred hhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000646 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1376)
Q Consensus 311 kf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~ 390 (1376)
..+++...++.....+++++...+.+..++..++..+.+++.++.+.+.+|..+..++ +........+ .....+.
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~----~~~e~kl~~v-~~~~e~~ 92 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI----KRAEEKLSAV-KDERELR 92 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc-ccHHHHH
Confidence 3456666666788888888888888888888888888888888888888888888888 4433333222 3455788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhh
Q 000646 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1376)
Q Consensus 391 eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~ 438 (1376)
.|..++..++.+..+++..+.+|...+..+....+.+...+..+...+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777777777777777666664444
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=7.7 Score=48.71 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=73.0
Q ss_pred hhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000646 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1376)
Q Consensus 311 kf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~ 390 (1376)
+...++..+..++-|+.+.+.-+.+++--+......+..+...+..+++|++.|....++=.+.+... .=+-++|.
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve 335 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVE 335 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHH
Confidence 44666677777888999999999999998889999999999999999999999988873322222111 11334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHh
Q 000646 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKE 422 (1376)
Q Consensus 391 eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e 422 (1376)
....+...+......+...++.|...+-.+..
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555555555555555555555544444433
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.85 E-value=5.2 Score=46.74 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000646 527 LKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1376)
Q Consensus 527 ~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele 593 (1376)
.|...+...+.++......+...+..+-.....+..++-++...+.++......+..++..+....+
T Consensus 13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444444444444444444444433
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.73 E-value=9.7 Score=48.98 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhh
Q 000646 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDEN 437 (1376)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e 437 (1376)
.......+.+|...|+.+......+...+..+...+..+..............+.+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666655555555555544444444443
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.73 E-value=11 Score=49.39 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHH
Q 000646 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEE 846 (1376)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~ 846 (1376)
++.|.+....++..+..+|...+..-..+..-+.-.+..++..++. .+....+.-.+.+ +++..|+..++.+..
T Consensus 357 Le~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~q---eri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 357 LECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQ---ERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHH
Confidence 4678888899999999999999888888776555555556655555 5555555444445 788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000646 847 QLAEAAGKYALLKEELDSYFIKVTSLE 873 (1376)
Q Consensus 847 ~~~ea~~k~~~l~~Ele~~~~~l~~~E 873 (1376)
-+.++.+.+.+...||--|-+.|+++-
T Consensus 434 ~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 434 LAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999998874
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.62 E-value=4.8 Score=44.66 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000646 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEE 591 (1376)
Q Consensus 512 Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEe 591 (1376)
-.++..|..++.+++.++.++..+-.-|..-.-+-...|..++..-+.+-.-|..+...|..|...+.....+.+.++..
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555554444444444444444444444444444455555555555555444444444444
Q ss_pred HH
Q 000646 592 LR 593 (1376)
Q Consensus 592 le 593 (1376)
+.
T Consensus 91 lk 92 (194)
T PF15619_consen 91 LK 92 (194)
T ss_pred HH
Confidence 44
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.34 E-value=2 Score=48.99 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=52.5
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000646 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1376)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1376)
.|++..+.+..+......++.++...-..++++..+|+....++++...+|+ ...|.+ .+.+++-.+..++
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~~~~----e~~aL~~E~~~ak 102 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVKDER----ELRALNIEIQIAK 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHH----HHHHHHHHHHHHH
Confidence 3444444444444444444444455555666777777777777777777764 223224 3344444444444
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHH
Q 000646 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVI 1136 (1376)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i 1136 (1376)
.++..|..++..++.++..+ ...+..+...+
T Consensus 103 ~r~~~le~el~~l~~~~~~l----~~~i~~l~~~~ 133 (239)
T COG1579 103 ERINSLEDELAELMEEIEKL----EKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44444444444444444444 44444444444
No 101
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.91 E-value=7.5 Score=42.81 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 533 erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
+..+..+..+++-+..++..++..+..+..++.+.......-+..++.+.++...+++..+.+.-++.+
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777777777777777777788888887777777777788888888888888888877776666
No 102
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.34 E-value=28 Score=46.82 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000646 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1376)
Q Consensus 510 ~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLE 589 (1376)
.+..+...|..|+.+++.+.. .+...+.+++.+...|..+...+..+...+..+...+..+++.+....-++..+.
T Consensus 656 ~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~ 731 (1141)
T KOG0018|consen 656 QLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIK 731 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 344555566666666666322 6666677777777777777777777777777777777777777776666666666
Q ss_pred HHHHHHHHHhhhHHHHhhhhhhhh-HHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 000646 590 EELRITKERSAEDEDRANMSHQRS-IELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKC-----E 663 (1376)
Q Consensus 590 Eele~L~EeLeE~e~rak~~rqrs-~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~-----k 663 (1376)
..+......+.+++.+.+....++ ...-..+...-..|++... .+..-.++.+++.++..++.++ .
T Consensus 732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~--------~~~~a~k~~ef~~q~~~l~~~l~fe~~~ 803 (1141)
T KOG0018|consen 732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL--------QQEFAKKRLEFENQKAKLENQLDFEKQK 803 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence 666555555555444443333322 1110000000011111111 1111233446667777776665 4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 664 EAEAGSKQYSDKVCELASELEAFQARTSSLEV 695 (1376)
Q Consensus 664 ~~eqel~el~~~l~~Lk~ELE~~eke~relEt 695 (1376)
+....+..|...+.++..+++.+...-..+..
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k 835 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEK 835 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 55555666666666666666655544444333
No 103
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.30 E-value=9.1 Score=45.63 Aligned_cols=149 Identities=19% Similarity=0.277 Sum_probs=81.0
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000646 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1376)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1376)
.-++.++..+...+..++.+...+......+...+..+.........++..+.....+ .-.--...+.....++...
T Consensus 145 ~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 145 QLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHH
Confidence 5555555566666666666666666666666665666666666666666655555422 1112234455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhH
Q 000646 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETG 470 (1376)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he 470 (1376)
..++...+.....+...+..+...+..+.....++...+..++....+.. +--..|+..++..+.....-|+
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r------~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR------GWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHC
Confidence 55555555555555555555555555555555555555555543221110 1123377777777776666555
No 104
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.20 E-value=25 Score=45.83 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 506 PRFIAAEQRSVELEQQLNLVELKSSDS--EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1376)
Q Consensus 506 ~~~~~~Ekk~keLE~Ql~elq~K~~e~--erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqL 578 (1376)
..+..+..++..++.++..+..++..+ ...+..+...+..+...+......+..+..++..+...+..++.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555442 2345555555555555555555555555544444444444444444
No 105
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.19 E-value=8.6 Score=42.88 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=94.4
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000646 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1376)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1376)
-|..+...|.+++..-.+.+..+......+.+|..-+..++..+..|..+|..+ .-+..+...+......+...++.++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888877777777777888888888888888888888888887422 1122333444445555555666666
Q ss_pred HHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELL 1181 (1376)
Q Consensus 1102 ~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i 1181 (1376)
-+...|......+..+...|-.+|...+.++.... ... .--++..|..|...+
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~-----------~~k----------------n~lLEkKl~~l~~~l 159 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT-----------GLK----------------NLLLEKKLQALSEQL 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH----------------HHHHHHHHHHHHHHH
Confidence 66666666666666666666555555555554444 222 344566666666666
Q ss_pred HHHHHHhhhhHHHHHHhhhhHH
Q 000646 1182 VNVETQFKEEVENVKVSAAGKE 1203 (1376)
Q Consensus 1182 ~~ae~~l~e~~~~v~~~~~~~e 1203 (1376)
....+.+.+ +-.++.-.-
T Consensus 160 E~keaqL~e----vl~~~nldp 177 (201)
T PF13851_consen 160 EKKEAQLNE----VLAAANLDP 177 (201)
T ss_pred HHHHHHHHH----HHHHcCCCH
Confidence 667777777 554444333
No 106
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=30 Score=46.55 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHH
Q 000646 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTS-LESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSK 910 (1376)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~-~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~ 910 (1376)
.++.+.+.-|.+++.+++...+.-.++..++... +++.. --......+.+..+..+.+..+.++-..|..+.-.++++
T Consensus 807 ~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ 885 (1141)
T KOG0018|consen 807 RRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESK 885 (1141)
T ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 6677766666666666666554444444443333 22222 022233344444444444444444444444444444444
Q ss_pred HHHHHHHHHHHh
Q 000646 911 VAELQELLDSAI 922 (1376)
Q Consensus 911 i~~Lqe~l~~~~ 922 (1376)
|..+..+--...
T Consensus 886 ie~~~~er~~lL 897 (1141)
T KOG0018|consen 886 IERKESERHNLL 897 (1141)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 107
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.11 E-value=11 Score=41.49 Aligned_cols=198 Identities=17% Similarity=0.242 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000646 654 QISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLA 733 (1376)
Q Consensus 654 qis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLe 733 (1376)
.+..+..++..++..+..|...+.-+...+..+....-..+.....+..... ........++.++.+.++--+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~-------kdEE~~e~~e~qLkEAk~iaE 77 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQ-------KLEEKMEAQEAQLKEAKHIAE 77 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666555444444433222222111 112223334444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHH
Q 000646 734 EAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKL 813 (1376)
Q Consensus 734 ElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L 813 (1376)
++.+.. .....++--++|+|.....+-+-.+.+...+...++.++..|......--.+. -..-+.+..|
T Consensus 78 ~adrK~-------eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~----q~~d~~e~~i 146 (205)
T KOG1003|consen 78 KADRKY-------EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE----QKEEKYEEEL 146 (205)
T ss_pred HHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh----hhHHHHHHHH
Confidence 333332 23333344467777666555566778888888888888777766543333332 2333344444
Q ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 814 QDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKV 869 (1376)
Q Consensus 814 ~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l 869 (1376)
+.--+.+-..+.-|...-....+|+-++-+++..+.....+...+..+|.+....|
T Consensus 147 k~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 147 KELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444455566666666666666666666666666666555443
No 108
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.01 E-value=17 Score=43.03 Aligned_cols=203 Identities=16% Similarity=0.194 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 000646 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI--------------TQLELILNQS 581 (1376)
Q Consensus 516 keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kI--------------s~LEsqLk~L 581 (1376)
+.|-.+...+..+...++.++....+.+..++-++.-....+.-+.....+-...- ..--..+..+
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 44444555555555555555566666666666666555554444432221111000 1112345677
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 582 NTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKK 661 (1376)
Q Consensus 582 qsrireLEEele~L~EeLeE~e~rak~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK 661 (1376)
+.+++.|+++-..|+.+... +......+++.. ..=+.+.=.++.....+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~------------------L~~et~~~EekE-------------qqLv~dcv~QL~~An~q 214 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQ------------------LKTETDTYEEKE-------------QQLVLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hhHHHhhccHHH-------------HHHHHHHHHHhhhcchh
Confidence 77888888777766665444 100001111100 00011333555666677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000646 662 CEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1376)
Q Consensus 662 ~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~ 741 (1376)
+..+...++.-..+..+...+|..+.+.+-.+...+......-.+|...+......=..|..++.+++.+..|.-+.|..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888888777777777777777777788888877777788888888888888887777776
Q ss_pred HHHHHHHH
Q 000646 742 LRNDLNMT 749 (1376)
Q Consensus 742 LR~El~l~ 749 (1376)
-+-++..+
T Consensus 295 aQEElk~l 302 (306)
T PF04849_consen 295 AQEELKTL 302 (306)
T ss_pred HHHHHHHh
Confidence 66555443
No 109
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=27 Score=45.03 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1376)
Q Consensus 705 reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1376)
.++...+.-.......++.++..|..+|...+..+.--|.+...+-.++.++.+++...
T Consensus 457 ~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~L 515 (716)
T KOG4593|consen 457 EELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELL 515 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555555666677778888888887777777766766666666666666655444
No 110
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.89 E-value=29 Score=45.48 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000646 1217 VKDRNALYEQVIQLQRELQIAQTAIAEQ 1244 (1376)
Q Consensus 1217 ~~~~d~l~~~v~~~~~el~~l~~~I~~y 1244 (1376)
-++|-.++.++..||++|.++...-+.|
T Consensus 632 E~EK~~v~etm~kLRnELK~LKEDAATF 659 (717)
T PF09730_consen 632 ENEKAMVSETMMKLRNELKALKEDAATF 659 (717)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888887777
No 111
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=30 Score=45.26 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=49.4
Q ss_pred hhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 000646 442 DSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQ 521 (1376)
Q Consensus 442 e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Q 521 (1376)
|..+--+.+++.+++.--+..+.-|.+|-.......-=+.+|-.++++.|+.........+.|......+-.....+..|
T Consensus 628 e~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q 707 (970)
T KOG0946|consen 628 EGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQ 707 (970)
T ss_pred HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666666666666666666666555554444456666666666655555555555555555555555555555
Q ss_pred HHHHHhhhh
Q 000646 522 LNLVELKSS 530 (1376)
Q Consensus 522 l~elq~K~~ 530 (1376)
++.+..++.
T Consensus 708 ~~~Lk~qLg 716 (970)
T KOG0946|consen 708 LDLLKNQLG 716 (970)
T ss_pred HHHHHHHhc
Confidence 555555444
No 112
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=29 Score=43.82 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 000646 704 ERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQ 783 (1376)
Q Consensus 704 ~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~ 783 (1376)
++.....+......+-.|+.-+..+...++|..+.+..+..++..+-++.... +.. .++.-.+-+.+ ++.
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~-k~e------~eee~~k~~~E---~e~ 496 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELK-KEE------AEEEWKKCRKE---IEK 496 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHH---HHH
Confidence 44555666666777777888888888888888888887777777666665522 100 11111222222 222
Q ss_pred HHHHHHHH----hhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHH
Q 000646 784 QTRVLEQA----TSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMY 844 (1376)
Q Consensus 784 ~~~~Le~e----~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~ 844 (1376)
++.+|-.+ ..+-.++. .+.+..|..+++.+...+..+-.+- ++|-.+=++|-++
T Consensus 497 le~~l~~l~l~~~~~m~~a~----~~v~s~e~el~~~~~~~~eer~ki~---~ql~~~i~~i~~~ 554 (581)
T KOG0995|consen 497 LEEELLNLKLVLNTSMKEAE----ELVKSIELELDRMVATGEEERQKIA---KQLFAVIDQISDF 554 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 22222222 23333333 5566667777776666665554443 6666666655554
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.28 E-value=26 Score=43.04 Aligned_cols=60 Identities=17% Similarity=0.394 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000646 377 SVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1376)
Q Consensus 377 ~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~ 436 (1376)
.....|......+..|+..|..++.....++.++.+....+..++....+++..+.++..
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555555555544444
No 114
>PRK09039 hypothetical protein; Validated
Probab=93.24 E-value=6.1 Score=47.53 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=44.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD 562 (1376)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~ 562 (1376)
|.+.+.--++....+...+..+...+..++..+..|+.+...........+.....+...+...+..+.+....+.-++.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~ 144 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQ 144 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333334444444444444444444444332222333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000646 563 QMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1376)
Q Consensus 563 klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1376)
.|..++..+..++..|.....+.......+..+
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 115
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=27 Score=42.88 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=101.6
Q ss_pred HHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcH----------HHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHH
Q 000646 427 LEEKLRNSDENFCKTDSLLSQALANNAELELKLKSL----------EEQHNETGAAAATASQRNLELEDIIRASNEAAEE 496 (1376)
Q Consensus 427 LEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~l----------ee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek 496 (1376)
+....++....|.-.++.-||+-+.++|++.++|-- ++--..-...+...+++..+|..|.+..+..+..
T Consensus 246 l~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~ 325 (521)
T KOG1937|consen 246 LQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQ 325 (521)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333444444455555555556666666666555332 2223334456677777788899999998888887
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000646 497 AKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE--EKKQLHDQMNDYKDKITQL 574 (1376)
Q Consensus 497 ~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~--ELeele~klee~q~kIs~L 574 (1376)
-+-+|+.........-.++.. +.+++..+.....++....+-..+|.+++..+-. ....+...|-++.+-|...
T Consensus 326 kkl~Lr~~l~~~e~e~~e~~~----IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq 401 (521)
T KOG1937|consen 326 KKLQLREELKNLETEDEEIRR----IQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQ 401 (521)
T ss_pred HHHHHHHHHhcccchHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 777775544433222222333 2222222333333333333444445555444333 2455677788888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 575 ELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 575 EsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
...+......-++|.-+.+++.+.+..
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888877766
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.18 E-value=33 Score=43.81 Aligned_cols=239 Identities=20% Similarity=0.270 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000646 339 EISALDNLLADAKENLHAKVSELEDIKLKLQEEVNA--RESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416 (1376)
Q Consensus 339 d~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~--~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~ 416 (1376)
|..++++.+..--..|.........-..++-++... +..-..++..-+.-+.-.+.+++.+-..-...+...=+.-..
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~ 95 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEK 95 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444444444444222222 222344555666777788899999999999999999999999
Q ss_pred HHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhH------HHHHHhccchHHHHHHHHH-
Q 000646 417 IARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETG------AAAATASQRNLELEDIIRA- 489 (1376)
Q Consensus 417 i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he------~~~~~~~qk~~EL~~qi~~- 489 (1376)
+.+.++|.--|..-......-. . -..|...+++.+++...+-. ..+..+.++..+++.++..
T Consensus 96 L~eaPDP~pll~sa~~~l~k~~--------~---~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ 164 (629)
T KOG0963|consen 96 LIEAPDPVPLLASAAELLNKQQ--------K---ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIF 164 (629)
T ss_pred HhhCCCCchHHHHHHHHhhhhh--------h---hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 9999998776654332211100 0 12355555555555443322 2444555555555554444
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 000646 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQ----MN 565 (1376)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~k----le 565 (1376)
.+..+.-....+ +. ..-.....+...-.....++..+..++..++..+.....++..+.++ +.
T Consensus 165 ie~~a~~~e~~~---~q----------~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~ 231 (629)
T KOG0963|consen 165 IENAANETEEKL---EQ----------EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVA 231 (629)
T ss_pred HHHHHHHHHHHH---HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhH
Confidence 111110011000 00 00111111222222222333334444444444444444444444443 34
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 566 DYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 566 e~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
-....++-+-..+...+.++.+|+.++..+..++..
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555566667777777777777777777666
No 117
>PRK09039 hypothetical protein; Validated
Probab=93.02 E-value=4.8 Score=48.41 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000646 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLS 544 (1376)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeekls 544 (1376)
|+.+|......+.....++..|--.+.-...+...++..+..++..+..+......+.....
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555444445555555555555555555555555554444433
No 118
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.85 E-value=21 Score=42.47 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=86.9
Q ss_pred hchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 000646 450 ANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKS 529 (1376)
Q Consensus 450 ~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~ 529 (1376)
+++..|..++...-+.+.....-+.+++||+.|+.+.|.-++.++-+.+.........-.. .....|=.|+..++.++
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999888887766666333322111 44444445555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD-------KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 530 ~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~-------kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
..+++++..+.+..+++..+-..+......++..++-.-. .|..|=-.-..+..|+.+++++.+.+...+..
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444433333332222222222111 12333333335555555555555544444333
No 119
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.68 E-value=19 Score=39.80 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000646 676 VCELASELEAFQARTSSLEV 695 (1376)
Q Consensus 676 l~~Lk~ELE~~eke~relEt 695 (1376)
...+..+...+...+-.++.
T Consensus 125 ~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 125 SKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.57 E-value=33 Score=42.26 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000646 701 NDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRND 745 (1376)
Q Consensus 701 ~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~E 745 (1376)
.+....|..-+.+-++....|+..+..-+..++++-..-..|+.+
T Consensus 195 ~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~ 239 (420)
T COG4942 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNE 239 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333444444444455555555555555555444444444443
No 121
>PRK11281 hypothetical protein; Provisional
Probab=92.42 E-value=60 Score=44.94 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhh-hhhHHHhh
Q 000646 905 NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFT-QRDIEANN 983 (1376)
Q Consensus 905 ~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~-~~e~~~ke 983 (1376)
..|++++.+++..|.+.+...-..+.++....+.-++-.+.++ .+-.|..++..++.-..-..+ --+.+..-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls-------ea~~RlqeI~~~L~~~~~~~~~l~~~~~~~ 196 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY-------ANSQRLQQIRNLLKGGKVGGKALRPSQRVL 196 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCCcCCHHHHHH
Confidence 4588888888888888888888888888877777777666662 333355555554432110000 11233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhh
Q 000646 984 LNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTR 1036 (1376)
Q Consensus 984 L~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~ 1036 (1376)
|++.+..++.++..+.-....+..--+--....+....++..++..+..|++.
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~ 249 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA 249 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655443333333222222223333333444444444444433
No 122
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.37 E-value=31 Score=41.55 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhh
Q 000646 390 SNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNET 469 (1376)
Q Consensus 390 ~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~h 469 (1376)
..+..+|......+..++..++...+++.......+-++..+.....+|.|.-+.|-+-+-....|.--++.|-+....-
T Consensus 84 r~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql 163 (499)
T COG4372 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQL 163 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555566666666666666666644333333333333344444444443
Q ss_pred H
Q 000646 470 G 470 (1376)
Q Consensus 470 e 470 (1376)
+
T Consensus 164 ~ 164 (499)
T COG4372 164 E 164 (499)
T ss_pred H
Confidence 3
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.25 E-value=27 Score=40.55 Aligned_cols=54 Identities=9% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1376)
Q Consensus 539 LeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1376)
+......++.+|..+...+..+..++.+.+..+..+...++.++..|..+++.+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333
No 124
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.19 E-value=40 Score=42.33 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHhhcccchhh-hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 000646 816 ALANITSRDSEA-KSFSEKLKNLEGQVKMYEEQLAEAA-GKYALLKEE----LDSYFIKVTSLESTNEELQRQVVEANNK 889 (1376)
Q Consensus 816 al~~~~~~~~Ea-~~l~k~L~~lq~qik~~q~~~~ea~-~k~~~l~~E----le~~~~~l~~~E~~~~~~e~e~~e~~~~ 889 (1376)
++-++-+.-++. .-++.-.+++++||-.+-.++--.- ++-.-+.++ +..+.-.+.+.|.+|-.++.-+
T Consensus 150 a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~l------ 223 (531)
T PF15450_consen 150 ACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSL------ 223 (531)
T ss_pred HHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 555554444443 3344556777777776655543211 222223333 3333334555555555444432
Q ss_pred hccccchhhhhHHHHH-HhHHHHHHHHHHHH----HHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 890 ANNSSSENELLVETNN-QLKSKVAELQELLD----SAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 890 ~~~~~~~~~~L~~~k~-~Le~~i~~Lqe~l~----~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
-.++.+=+.... .++.++..|....+ ..+++.--..+++++.-..|..|+.-+
T Consensus 224 ----reElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v 281 (531)
T PF15450_consen 224 ----REELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFV 281 (531)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 123333333322 34677777777776 335566667788888888888777666
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.05 E-value=18 Score=38.19 Aligned_cols=95 Identities=25% Similarity=0.245 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000646 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1376)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElk 729 (1376)
........++.++.++++.+.....+...+..+.+...+.+..+...+.......++|...+..+...+..|......++
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666777777777777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 000646 730 EKLAEAENLLELLRN 744 (1376)
Q Consensus 730 eqLeElE~~Le~LR~ 744 (1376)
.++.+++.......+
T Consensus 94 ~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 94 EKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHhHHHHH
Confidence 888888877765544
No 126
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.54 E-value=46 Score=41.77 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=59.1
Q ss_pred HHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHH
Q 000646 407 EAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDI 486 (1376)
Q Consensus 407 E~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~q 486 (1376)
..++.-|...+.++.+.+..|...+..-+.++..-+. .++.+=+-|..+ |-..-...++++.++.++..+=+.-
T Consensus 91 ~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~q---e~~~rl~~L~~~---Lrqee~~re~a~~aL~k~qe~~~~k 164 (531)
T PF15450_consen 91 QNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQ---EAGLRLSKLQDM---LRQEEQGREDACSALQKSQEEDSQK 164 (531)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHH---HHHHHHhHHHHHHHHHhcchhhHHh
Confidence 4445555666666666666666666666666655554 223333333333 3344445677888888887665555
Q ss_pred HHH----hHHHHHHHHHHH------------hhhhhhHHHHHHHHHH
Q 000646 487 IRA----SNEAAEEAKSQL------------RELEPRFIAAEQRSVE 517 (1376)
Q Consensus 487 i~~----~~~~~Ek~k~~l------------~~l~~~~~~~Ekk~ke 517 (1376)
++. +.+.+-+....+ ..|++.|.+.++..+.
T Consensus 165 ~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka 211 (531)
T PF15450_consen 165 VDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKA 211 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 455554444444 4555556555555554
No 127
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.54 E-value=31 Score=39.81 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=91.2
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhh-
Q 000646 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGG- 1046 (1376)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~- 1046 (1376)
......+......+..+...+..++..+..+.++++.+++.++......+.+......+...|..+...+..+-..+..
T Consensus 34 ~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l 113 (264)
T PF06008_consen 34 RSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESL 113 (264)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455556777777888888888888889998888888888777887777777777777776654433332211
Q ss_pred -------hHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 000646 1047 -------LVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENN 1119 (1376)
Q Consensus 1047 -------~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~ 1119 (1376)
+...+.+...++..+=..|+. - ..+.-+ .....+.....+.+...+..+...+.+-......+.
T Consensus 114 ~~~~~~~~~~~l~~~l~ea~~mL~emr~---r----~f~~~~--~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~ 184 (264)
T PF06008_consen 114 NENGDQLPSEDLQRALAEAQRMLEEMRK---R----DFTPQR--QNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIR 184 (264)
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHh---c----cchhHH--HHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHH
Confidence 111221111222111111111 1 001111 111123344444444545555555555555545555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 000646 1120 SLNETYQNAKNELQSVISQLEAQLNEK 1146 (1376)
Q Consensus 1120 ~L~~~~e~~~kEl~~~i~~le~qL~~k 1146 (1376)
.....|...+.|++..+.+.......-
T Consensus 185 ~~L~~~~~kL~Dl~~~l~eA~~~~~ea 211 (264)
T PF06008_consen 185 DDLNDYNAKLQDLRDLLNEAQNKTREA 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666665554444443
No 128
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=55 Score=42.37 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=65.7
Q ss_pred hhHhhhHHHHH---HHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 000646 805 LMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQR 881 (1376)
Q Consensus 805 ~~kk~E~~L~e---al~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~ 881 (1376)
.......++++ ..-+.+-..+-.+.|++.|+.++.-+..|--+..++-+.+...+.-..++...+.+.-+.+++++.
T Consensus 361 ~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~ 440 (716)
T KOG4593|consen 361 GLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKG 440 (716)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHH
Confidence 34566677777 666777788888999999999999999999999999988888888888888888887777777765
Q ss_pred HHHHH
Q 000646 882 QVVEA 886 (1376)
Q Consensus 882 e~~e~ 886 (1376)
=+..+
T Consensus 441 lV~~~ 445 (716)
T KOG4593|consen 441 LVQKV 445 (716)
T ss_pred HHHHH
Confidence 44333
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.20 E-value=28 Score=38.56 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 528 KSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN 582 (1376)
Q Consensus 528 K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lq 582 (1376)
+...+.+++-.++.-+......+.+..+.+.++..-+.+|......|...+..+.
T Consensus 131 ~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 131 EKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444433333
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.75 E-value=40 Score=39.63 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q 000646 544 SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDR 605 (1376)
Q Consensus 544 skLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~r 605 (1376)
...+..+......+.++..-....+.+++..-..-..+..|+.+++.+---|+.+++....+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444455555555555666667777777766666666663333
No 131
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.49 E-value=53 Score=40.62 Aligned_cols=150 Identities=17% Similarity=0.309 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000646 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKF 1168 (1376)
Q Consensus 1089 ~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~ 1168 (1376)
.++.+=|-|.+|+..|..|-.+++...=+.|-+ .+..+.|...+.+..+.|.+..+- +.
T Consensus 356 kQqvfvDiinkLk~niEeLIedKY~viLEKnd~----~k~lqnLqe~la~tqk~LqEsr~e-----------------Ke 414 (527)
T PF15066_consen 356 KQQVFVDIINKLKENIEELIEDKYRVILEKNDI----EKTLQNLQEALANTQKHLQESRNE-----------------KE 414 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHhh-----------------HH
Confidence 455677889999999999999999999999999 888888888888888888775333 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 000646 1169 ALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGAD 1248 (1376)
Q Consensus 1169 ~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y~~~~ 1248 (1376)
.++.++..+.......+.+|..+++ .|+..-.+-+++.+-|..-...|.....--
T Consensus 415 tLqlelkK~k~nyv~LQEry~~eiQ-------------------------qKnksvsqclEmdk~LskKeeeverLQ~lk 469 (527)
T PF15066_consen 415 TLQLELKKIKANYVHLQERYMTEIQ-------------------------QKNKSVSQCLEMDKTLSKKEEEVERLQQLK 469 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH-------------------------HhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666666665555555555555321 123333333344444444444443331111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1249 SQKDSEREAALKSSLEELGAKNKEAALLQNKVAELE 1284 (1376)
Q Consensus 1249 sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~le 1284 (1376)
..|+.....+|.-+..+-+.-+++.-.|+.++-.-+
T Consensus 470 gelEkat~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 470 GELEKATTSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222445556566666666666666665555443
No 132
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.14 E-value=80 Score=42.09 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=74.5
Q ss_pred hHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhH----------HHHHHHHHHHhhhhhhHHHHHHHHHHHH--
Q 000646 452 NAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASN----------EAAEEAKSQLRELEPRFIAAEQRSVELE-- 519 (1376)
Q Consensus 452 ~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~----------~~~Ek~k~~l~~l~~~~~~~Ekk~keLE-- 519 (1376)
+.|....+|+.+..+..|= +--+|+.-|+.-++-++ +++-+.|..+..+.........++--.-
T Consensus 168 ~~E~~~~~~~ae~a~kqhl----e~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~ 243 (769)
T PF05911_consen 168 NEEREYSRRAAEAASKQHL----ESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPS 243 (769)
T ss_pred HHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCccc
Confidence 3455556667776666664 34466777888777733 6666777777665333222222111100
Q ss_pred -------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 520 -------QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1376)
Q Consensus 520 -------~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqL 578 (1376)
............+..++-.+++...-|+.-|.....+|............+++.++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 244 SPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233344555666667777777777777777777777777777778888888888
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.98 E-value=2.7 Score=46.34 Aligned_cols=112 Identities=29% Similarity=0.343 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1376)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~ 569 (1376)
+...+-+....|.++...+..+-++...+...+..+..++....+.+..+...+..+...+..+...+......+..++.
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666666777777777777777777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 570 kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.+..|..+.+.+..+++.|+.+-..|-++.-.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777766554433
No 134
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.96 E-value=43 Score=38.72 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000646 666 EAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1376)
Q Consensus 666 eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le 740 (1376)
...+..+..++.+++.-+..+...++..+......+..+. ++...+..+..........|.+.++.|.
T Consensus 184 ~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~-------~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 184 RDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLE-------DLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555444444444443333333333 3333344444444444444444444443
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.92 E-value=59 Score=40.81 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=17.6
Q ss_pred hHHHHhhHHHHHHHHHhhHHHHHHHhh
Q 000646 1047 LVETNLKLTEDLALYETKLSDLQAKLS 1073 (1376)
Q Consensus 1047 ~v~~i~rL~kEi~~lE~qlkeL~~qLs 1073 (1376)
......-|..++..++.++.+...++.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~ 185 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLK 185 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677777777777666655
No 136
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.46 E-value=52 Score=39.02 Aligned_cols=264 Identities=17% Similarity=0.289 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHH
Q 000646 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1376)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~ 909 (1376)
|...+..|+.+.+.+..+++-.+.++.+|..|+..+...--.+-..- |.+++ .++ ..|=-
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~a--------EqEEE---------~is---N~LlK 84 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKA--------EQEEE---------FIS---NTLLK 84 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---------HHH---HHHHH
Confidence 44777778888888888888888888888888777766422222111 12221 011 11222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhHHHHHH
Q 000646 910 KVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVS 989 (1376)
Q Consensus 910 ~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL~~kl~ 989 (1376)
+|+.|.-+-+......+.=.+ -||..|+|-+ .+.-...+.+...+.. .-+..|.-|..++.
T Consensus 85 kl~~l~keKe~L~~~~e~EEE----------~ltn~L~rkl-------~qLr~EK~~lE~~Le~--EqE~~V~kL~k~i~ 145 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEE----------FLTNDLSRKL-------NQLRQEKVELENQLEQ--EQEYLVNKLQKKIE 145 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH-------HHHHHHHHHHHHHHHH--hHHHHHHHHHHHHH
Confidence 344444333333323322222 2333332222 0111111222333333 33445667777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHH
Q 000646 990 VLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQ 1069 (1376)
Q Consensus 990 ~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~ 1069 (1376)
.|+.....|.. .+..+...--.+++. ++.|..- -+.+|.+.+..+...=.-|+
T Consensus 146 ~Le~e~~~~q~---------------------~le~Lr~EKVdlEn~---LE~EQE~---lvN~L~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 146 RLEKEKSAKQE---------------------ELERLRREKVDLENT---LEQEQEA---LVNRLWKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHhHH---------------------HHHHHHHHHHhHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 77665544211 111111111112222 2222111 23455666666666666666
Q ss_pred HHhhhccccccccHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHH
Q 000646 1070 AKLSATIVEKDETVEQLH------ASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQL 1143 (1376)
Q Consensus 1070 ~qLs~~~~e~~rTveELq------~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL 1143 (1376)
.+|..+.+ ...|+.++- +.-..+.-.++.|+.++..|..++-....+...-.+.|...-+.+...--.+...|
T Consensus 199 ~~l~~~~s-~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L 277 (310)
T PF09755_consen 199 EKLEQPVS-APPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKL 277 (310)
T ss_pred HHHccccC-CCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66632111 223444442 13356777788899999999999988888888887888777777766666666666
Q ss_pred HHHHhhhHHHHHHHHHH
Q 000646 1144 NEKKATEETFKSEIESL 1160 (1376)
Q Consensus 1144 ~~k~~i~~~~~~eI~~l 1160 (1376)
..-.+...++.+.+...
T Consensus 278 ~~E~erreal~R~lses 294 (310)
T PF09755_consen 278 QREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555554444444433
No 137
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.46 E-value=32 Score=36.48 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000646 688 ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAEN 737 (1376)
Q Consensus 688 ke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~ 737 (1376)
...+.++..|...+....+|...+......+..|+.-..++...|.+++.
T Consensus 66 ~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 66 SELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444444444444443
No 138
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.86 E-value=79 Score=40.25 Aligned_cols=214 Identities=18% Similarity=0.185 Sum_probs=108.7
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhh
Q 000646 897 NELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQ 976 (1376)
Q Consensus 897 ~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~ 976 (1376)
..+..+..+.|..++..|...+.....+...+.-.+.+...-.+-....|.. +.. .......-.+....
T Consensus 150 ~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~----------~~~-A~~~~~~~l~~~~e 218 (511)
T PF09787_consen 150 SRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEE----------RPK-ALRHYIEYLRESGE 218 (511)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHHHH
Confidence 3445666699999999999999988888888877776666665544444411 111 22334444444334
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhh--------------hhhHh
Q 000646 977 RDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRS--------------GHFER 1042 (1376)
Q Consensus 977 ~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~--------------~~lEs 1042 (1376)
+...+.=++.-+...+.....|..-|+- -+..-+..|..|+... ..+-.
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~-----------------iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~ 281 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQR-----------------ILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQ 281 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------HhcCHHHHHHHHHhcccccccccccchhcchhhHH
Confidence 4444444555555556666666544333 4445555566665511 11222
Q ss_pred hhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHh
Q 000646 1043 ESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL---TSEVQGLQTQISAIMEENN 1119 (1376)
Q Consensus 1043 Elr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkL---r~~i~~L~~qke~aeeE~~ 1119 (1376)
|..-.-+.+..|...|..+..++.+...++. .. ++-.+.....+...+.-. ..++..+...++...++..
T Consensus 282 E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 282 ERDHLQEEIQLLERQIEQLRAELQDLEAQLE-----GE--QESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 2233334555555556666666666666643 11 122222222222222222 3445555555555555555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHH
Q 000646 1120 SLNETYQNAKNELQSVISQLEAQLNE 1145 (1376)
Q Consensus 1120 ~L~~~~e~~~kEl~~~i~~le~qL~~ 1145 (1376)
+........+.+....|..+..+|..
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 55333344444444444333333333
No 139
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.62 E-value=40 Score=36.60 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 000646 338 EEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNI 417 (1376)
Q Consensus 338 ed~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i 417 (1376)
.|+.-++..-..|...|+.+..+|..+...+---.-..+-...++......+..+..+|.........+.+.+..+....
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777888888888888888888886667777777888888888888888888888888888888888888777
Q ss_pred HHhHhhhHHHHHHHhhhHh-----hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHH
Q 000646 418 ARMKELCSELEEKLRNSDE-----NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAA 473 (1376)
Q Consensus 418 ~eL~e~~eeLEeeL~~~~~-----e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~ 473 (1376)
..+.....+|....+-... +|-++-. ++..+++++..+...|+..-
T Consensus 122 ~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~----------~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 122 DKLRKQNKKLRQQGGLLGVPALLRDYDKTKE----------EVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666665543 4666655 78888888887777776443
No 140
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=88.42 E-value=81 Score=39.86 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhh------HHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHH
Q 000646 771 MEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESE------MKLQDALANITSRDSEAKSFSEKLKNLEGQVKMY 844 (1376)
Q Consensus 771 ~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E------~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~ 844 (1376)
...++++...+.+.-..++.-+-.=+.++.-.+++.+-++ .++++.|-.+-+-+.+|. ..|..+...+-..
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Ar---e~l~~~~~~l~ei 429 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAR---ENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334444444444333334334444444433333333222 234445555555566666 6666666666555
Q ss_pred HHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhH
Q 000646 845 EEQLAE----------------AAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLK 908 (1376)
Q Consensus 845 q~~~~e----------------a~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le 908 (1376)
-|-+.- +.-....+-.+|.+...-+.+.-+-.+.+......+.+++.+. -+|.-|++...+|.
T Consensus 430 kR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~-ve~a~LaE~lIQY~ 508 (570)
T COG4477 430 KRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEV-VENAVLAEQLIQYG 508 (570)
T ss_pred HHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 444433 3355566777777777777777777777777777777665444 47888888888887
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 000646 909 SKVAELQELLDSAISEKEAT 928 (1376)
Q Consensus 909 ~~i~~Lqe~l~~~~~e~e~~ 928 (1376)
.+-.--...+....++.+..
T Consensus 509 NRYRs~~~~v~~~l~eAe~l 528 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAERL 528 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 77755555555555444443
No 141
>PRK11281 hypothetical protein; Provisional
Probab=88.08 E-value=1.3e+02 Score=41.85 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHH
Q 000646 832 EKLKNLEGQVKMYEEQLAEAAGKYALL--------KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVET 903 (1376)
Q Consensus 832 k~L~~lq~qik~~q~~~~ea~~k~~~l--------~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~ 903 (1376)
-+..+.|..|...+..+.+.+..+++. .+-...+..++..++..+...++++........-....-..+...
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~ 235 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTAR 235 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333221 122334445555555555555555554444333344444445566
Q ss_pred HHHhHHHHHHHHHHHHH
Q 000646 904 NNQLKSKVAELQELLDS 920 (1376)
Q Consensus 904 k~~Le~~i~~Lqe~l~~ 920 (1376)
..+++..|..||+.++.
T Consensus 236 ~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 236 IQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777788877777
No 142
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.96 E-value=50 Score=36.93 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000646 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---ERELTESLNAAADEKRKLQDTSN 726 (1376)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek---~reL~eqleelek~k~~LE~Eie 726 (1376)
.+...+..+.++....++.+......-.++...|..+..++..+...+...... +..+...+..+++.+..|.-+.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555544433332222 22333444444555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000646 727 GYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA-AGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1376)
Q Consensus 727 ElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~-~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~ 795 (1376)
-+...+..++..-+.|...+ ...=.+++- .|++.--++.|+..+..+++..++.|...-+..
T Consensus 111 vL~qr~~kle~ErdeL~~kf-------~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKF-------ESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555554444444444433 332222222 234455566777777777777777776664443
No 143
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.85 E-value=64 Score=38.03 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000646 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1376)
Q Consensus 380 ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~ 414 (1376)
..++....++..|..+..-+..+...-.....+|+
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLE 90 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLE 90 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHH
Confidence 34444444444444443333333333333333333
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=87.56 E-value=58 Score=44.19 Aligned_cols=221 Identities=22% Similarity=0.240 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHH
Q 000646 835 KNLEGQVKMYEEQLAEAAGKYAL----------LKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETN 904 (1376)
Q Consensus 835 ~~lq~qik~~q~~~~ea~~k~~~----------l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k 904 (1376)
-.||++|..++-.+.++-.+.+. +...++-++..|.+-.-.-. .=...++-+-..|-++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 235 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEG----------LCVHSLSKELDVLKEEN 235 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccc----------cccccHHHHHHHHHHHh
Confidence 36778888888888776544432 23333333222221100000 00112344556677888
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHhhhhhhhhHHHhhH
Q 000646 905 NQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNL 984 (1376)
Q Consensus 905 ~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~~~~q~~e~~~~~~~~e~~~keL 984 (1376)
.-|+.+|.-|-.+|.+.. .+.+++. ..+.-+. -++..+++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~----~~~~~~~---------------------------------~~~~~~~--~~~~~~~~~ 276 (977)
T PLN02939 236 MLLKDDIQFLKAELIEVA----ETEERVF---------------------------------KLEKERS--LLDASLREL 276 (977)
T ss_pred HHHHHHHHHHHHHHHHHH----hhhHHHH---------------------------------HHHHHHH--HHHHHHHHH
Confidence 888888888777776532 2222221 2334444 566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhh
Q 000646 985 NEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETK 1064 (1376)
Q Consensus 985 ~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~q 1064 (1376)
-.|+......+.+ -... +++.+=.+|+.|+.- ++. ....++..+-.-..-.++..+
T Consensus 277 ~~~~~~~~~~~~~-----------~~~~---------~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (977)
T PLN02939 277 ESKFIVAQEDVSK-----------LSPL---------QYDCWWEKVENLQDL---LDR-ATNQVEKAALVLDQNQDLRDK 332 (977)
T ss_pred HHHHHhhhhhhhh-----------ccch---------hHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhccchHHHHH
Confidence 7777555444433 0111 233344455555554 333 344444444444555677778
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHH
Q 000646 1065 LSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLE 1140 (1376)
Q Consensus 1065 lkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le 1140 (1376)
|+.|..-|..|.+..-+ ...++.++.+++.+..-....-.+++.--.-|...+.+.++.++++.
T Consensus 333 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 333 VDKLEASLKEANVSKFS------------SYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHHHHHhhHhhhh------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777422222222 12345555666666666666666666665666777777766665443
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.23 E-value=1e+02 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1148 ATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1148 ~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
....++..++..++..+........++..|++....++.-|..
T Consensus 352 ~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 352 ARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555888888888888888888999999999999999998
No 146
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=94 Score=39.25 Aligned_cols=126 Identities=19% Similarity=0.146 Sum_probs=97.8
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000646 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEP-RFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVE 554 (1376)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~-~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE 554 (1376)
+.|+..||+...|..+.-++..+..+-...+ -+.........=+.-+++--.|-....+.|.++...+.+++.++..+.
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455588888999999999988888844333 344445555555667777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 555 EEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 555 ~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.++..+.....++...-..++.+.-.+...++...-.-..+.....+
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE 174 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE 174 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888877777777777666666665555
No 147
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.18 E-value=74 Score=38.05 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 555 EEKKQLHDQMNDYKDKITQLELILN 579 (1376)
Q Consensus 555 ~ELeele~klee~q~kIs~LEsqLk 579 (1376)
.-+.++...|.+.+..+.+++...-
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555544444
No 148
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.12 E-value=41 Score=34.98 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000646 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1376)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1376)
+....+.+..+.+.+..+..-+++...+..-|+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777766666555
No 149
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.93 E-value=59 Score=36.64 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000646 585 SSELEEELRITKE 597 (1376)
Q Consensus 585 ireLEEele~L~E 597 (1376)
+..+..+.+.+..
T Consensus 71 i~~~~~erdq~~~ 83 (207)
T PF05010_consen 71 IQKLLKERDQAYA 83 (207)
T ss_pred HHHHHhhHHHHHH
Confidence 3333333333333
No 150
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.89 E-value=42 Score=34.89 Aligned_cols=123 Identities=14% Similarity=0.286 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000646 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAA 1165 (1376)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~ 1165 (1376)
++..+..+...+......+..++.++..-....+....+|+ +.|....... ..|..+|..
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE--------------~El~~Ha~~~----~~L~~lr~e-- 67 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE--------------RELVKHAEDI----KELQQLREE-- 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHH----HHHHHHHHH--
Confidence 34444444444444444455555544444444444444444 3333333333 455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000646 1166 EKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAE 1243 (1376)
Q Consensus 1166 e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~ 1243 (1376)
...+...|..|......+...|.. ....+......+...+ +.+...+..|..+=..+++.|..
T Consensus 68 -~~~~~~~~~~l~~~~~~a~~~l~~----~e~sw~~qk~~le~e~----------~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 68 -LQELQQEINELKAEAESAKAELEE----SEASWEEQKEQLEKEL----------SELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566777777777778888877 7777777777777777 66777775555555555555543
No 151
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=86.62 E-value=61 Score=36.52 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 723 DTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1376)
Q Consensus 723 ~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1376)
..+.++..--......+.+|++.+...++++.+++..|..+
T Consensus 147 ~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 147 KANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444555567776666666666665544444
No 152
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.04 E-value=22 Score=40.96 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHH
Q 000646 830 FSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1376)
Q Consensus 830 l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~ 909 (1376)
|-.+|..++.+++..+..+.+...++..|..++-.....-.-++..+.+++.....+.........++..|....+.+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33888888888888888888888888777777777666666666666666666666655544444445555555555555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 000646 910 KVAELQELLDSAISEKEATGQQLA 933 (1376)
Q Consensus 910 ~i~~Lqe~l~~~~~e~e~~~e~l~ 933 (1376)
.|..|.+....--.+...+-.++.
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444444444444433333
No 153
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.99 E-value=1e+02 Score=38.38 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHH
Q 000646 1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVI 1136 (1376)
Q Consensus 1077 ~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i 1136 (1376)
.+-.+|+.-||.........+...+.+-..|+-+.....-.+-.|...|...+.+.+--+
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv 445 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV 445 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Confidence 344556666666666777777788888888888888888888888888888887776655
No 154
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.65 E-value=1.4e+02 Score=39.83 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 712 NAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDL 760 (1376)
Q Consensus 712 eelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l 760 (1376)
+-+...+..++.++.-|++.|.-..+.|+..|+-|--+.+++..+|+.+
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777889999999999999999999999999999999999999988
No 155
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=85.56 E-value=74 Score=36.48 Aligned_cols=175 Identities=16% Similarity=0.278 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhccc-chhhhhHHHHHHHHHHHHHHHH
Q 000646 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSR-DSEAKSFSEKLKNLEGQVKMYE 845 (1376)
Q Consensus 767 eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~-~~Ea~~l~k~L~~lq~qik~~q 845 (1376)
-..-+.+......+|..++..|+.+.++|.+.. ..+....|.+++.-.+.+... ..=...+...+..|..-+..+.
T Consensus 29 r~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788889999999999999999999988 344556666665522222111 1112233466666666666666
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHH
Q 000646 846 EQLAEAA--------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQEL 917 (1376)
Q Consensus 846 ~~~~ea~--------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~ 917 (1376)
..+.+.+ ....++..++..|...+..=-..|.+-+..+..--.+.. ..-+..+-.++..-++.+..|-..
T Consensus 106 ~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~--~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 106 EEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEE--NRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554 444567777777777766655555555555544443322 223455667777788888888888
Q ss_pred HHHHhhhHHHHHHHHHh-hhccHHHHHHHH
Q 000646 918 LDSAISEKEATGQQLAS-HMNTVTELTEQH 946 (1376)
Q Consensus 918 l~~~~~e~e~~~e~l~~-~~~~~~~L~~~l 946 (1376)
++.........++.|+. ...-+..|...|
T Consensus 184 le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 184 LEEVKRRREKGDEQFQNFVLEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888777788888877 334466666666
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.62 E-value=25 Score=36.24 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000646 1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1376)
Q Consensus 1077 ~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1376)
+.+...|+-+++.+.++...+-.++.++..|..+++.+..++-.|
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888888888888887
No 157
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.19 E-value=99 Score=36.80 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 696 ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1376)
Q Consensus 696 ~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~ 762 (1376)
.....+..+..|..++-+++...+.+-.+.+++...|...-..-..|..++.-++.+-...-+=|++
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666666667777777777777777777766665556666666665555544333333
No 158
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=83.20 E-value=1.1e+02 Score=36.42 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 000646 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1376)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElk 729 (1376)
.+.++.+-.-.+...|...+..-..-...++.+++..++.|..++..--.-+.+..+-+..+-++...+.-....+.-++
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq 298 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQ 298 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666677888888888888888889999999999999888885445555666666666666667777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 730 EKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1376)
Q Consensus 730 eqLeElE~~Le~LR~El~l~q~k~eslE~~l~~ 762 (1376)
.+|..++....+|+.+-+.+--++..++..+.+
T Consensus 299 ~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 299 KKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 888888888888888877777777766665544
No 159
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.94 E-value=1.8e+02 Score=38.76 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 000646 513 QRSVELEQQLNLVELKSSDSEREVREF 539 (1376)
Q Consensus 513 kk~keLE~Ql~elq~K~~e~erei~eL 539 (1376)
....-|..|+..+..++..++..+..|
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.69 E-value=8.6 Score=42.46 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000646 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1376)
Q Consensus 511 ~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEE 590 (1376)
....+..+...+.++...+++....+..+...+..+...+......+..+...+..+...+..+...+.....-+..+.+
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhhHHHHhhhhh
Q 000646 591 ELRITKERSAEDEDRANMSH 610 (1376)
Q Consensus 591 ele~L~EeLeE~e~rak~~r 610 (1376)
++..+.-++.-.+.+.....
T Consensus 152 E~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666655555444444444
No 161
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.43 E-value=1.2e+02 Score=36.62 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000646 566 DYKDKITQLELILNQSNTRSSELEEELR 593 (1376)
Q Consensus 566 e~q~kIs~LEsqLk~LqsrireLEEele 593 (1376)
.|...+..++.++..+..++..++..+.
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 162
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.42 E-value=1.5e+02 Score=37.68 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=15.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 000646 899 LLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1376)
Q Consensus 899 ~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~ 928 (1376)
.|..+...+..+++++..++.......+.+
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555555555555444444333
No 163
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.87 E-value=1.4e+02 Score=36.85 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 000646 1357 FIIGVALVSVIIGI 1370 (1376)
Q Consensus 1357 ~~~~va~~s~~~~~ 1370 (1376)
++++.+++++++||
T Consensus 399 ~l~~~~~~Gl~lg~ 412 (444)
T TIGR03017 399 NLVLSIFLGMLLGI 412 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444555555555
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.67 E-value=42 Score=41.38 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=73.6
Q ss_pred cchHHHHH-HHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 478 QRNLELED-IIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE 556 (1376)
Q Consensus 478 qk~~EL~~-qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~E 556 (1376)
+.+.+++. |+++.++..+......++|.....+.+...+-++..+..++.|+.....+.....+--..+.....-+...
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k 418 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK 418 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44455666 88889999999988888888888888888888888888888888877777766665444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 557 KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 557 Leele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
+..+. ..+...+......|..|++.+..|.-.++-
T Consensus 419 l~~~~----------e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 419 LKELE----------EREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 33333 333333344445555555555545444443
No 165
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=81.63 E-value=1.1e+02 Score=35.25 Aligned_cols=148 Identities=25% Similarity=0.313 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHH-HHHHHHHHHHHHHHH
Q 000646 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLK-NLEGQVKMYEEQLAE 850 (1376)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~-~lq~qik~~q~~~~e 850 (1376)
.|+......+......++.+...|-...+--=...+.....|...|..-++.+.|+. ++|. .++.+|..++..+..
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~ 81 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVEN 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777777776666555544445566777788889999999999888 6665 456677777755544
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 000646 851 AA-GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATG 929 (1376)
Q Consensus 851 a~-~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~ 929 (1376)
-- .+...+..=+.-+..++.+++....+-..++...-+ .-...|..+|.+|.+-|+..-.....-.
T Consensus 82 ~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie-------------~~~~~l~~~l~~l~~~~~~Er~~R~erE 148 (247)
T PF06705_consen 82 QISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIE-------------ELNQELVRELNELQEAFENERNEREERE 148 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 566666666666666777766666665555444332 4456778889999999988877776665
Q ss_pred HHHHhh
Q 000646 930 QQLASH 935 (1376)
Q Consensus 930 e~l~~~ 935 (1376)
..+.+-
T Consensus 149 ~~i~kr 154 (247)
T PF06705_consen 149 ENILKR 154 (247)
T ss_pred HHHHHH
Confidence 555443
No 166
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.34 E-value=1.1e+02 Score=35.09 Aligned_cols=186 Identities=18% Similarity=0.177 Sum_probs=116.6
Q ss_pred HHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000646 309 EQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQ 388 (1376)
Q Consensus 309 ekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae 388 (1376)
+..+.-+..-+-++..++..+++.+..+......+++.+.++.....+++..-.......++..+ ..+...+..+...
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~ 100 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDL 100 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHH
Confidence 43445666677789999999999999999999999999999999999999888888877765443 3344555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhhhhhhh--hhchHHHHHHHhcHHHHh
Q 000646 389 VSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQA--LANNAELELKLKSLEEQH 466 (1376)
Q Consensus 389 ~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~~lsq~--~~~~~El~~~~k~lee~~ 466 (1376)
+..+...+.........+...+..|...|.+++....-|.-.......-.+=..+ ++-+ ++.-+.|+. +++..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~-~~~~s~~sa~~~fer----~e~ki 175 (225)
T COG1842 101 AKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRS-LGGGSSSSAMAAFER----MEEKI 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhHHHHHH----HHHHH
Confidence 6666666666666666677777777766666666555554443333331111111 1111 233344444 44444
Q ss_pred hhhHHHHHHhc----cchHHHHHHHHH------hHHHHHHHHHHH
Q 000646 467 NETGAAAATAS----QRNLELEDIIRA------SNEAAEEAKSQL 501 (1376)
Q Consensus 467 ~~he~~~~~~~----qk~~EL~~qi~~------~~~~~Ek~k~~l 501 (1376)
.+-++++..+- -.+..|..++.+ ++..+...|..+
T Consensus 176 ee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~ 220 (225)
T COG1842 176 EEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARM 220 (225)
T ss_pred HHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhh
Confidence 45555554444 344666666666 455555555443
No 167
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.00 E-value=1.3e+02 Score=35.96 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=61.8
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000646 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1376)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1376)
.-++.|+..+...+..++.+...+..+...+...+-.+.........++..+....++ ...+ -...+..+..++..+
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e-~~~~--d~~eL~~lk~~l~~~ 216 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE-LEDC--DPTELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHhC--CHHHHHHHHHHHHHH
Confidence 4455555555555666666555555555555555555555555555555554444322 0000 122333444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000646 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1376)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~ 436 (1376)
..++...+.....+..++..+...|........++...+..++.
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555544
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.77 E-value=16 Score=36.75 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 000646 863 DSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASH 935 (1376)
Q Consensus 863 e~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~ 935 (1376)
.++...|+.+++.++..+.-.+++...--.+.+-+..|.+++.....+|.+|+.+++++..+.+. +++.+.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~ 82 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKL 82 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34555666666666666666666666555566677777888888888888888888888877765 454443
No 169
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=80.46 E-value=98 Score=34.13 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhH
Q 000646 829 SFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLK 908 (1376)
Q Consensus 829 ~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le 908 (1376)
+|.-+|...++.-.-++.+++-.++-+.+.+.|-...++.-..+++.+-.-..++--=.+++.-+..+-..|+.+-.--+
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae 140 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAE 140 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477777777777777777777777777666666666665555555322222222222344455667888888888889
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 000646 909 SKVAELQELLDSAISEKEATGQQL 932 (1376)
Q Consensus 909 ~~i~~Lqe~l~~~~~e~e~~~e~l 932 (1376)
.+|..|+++|-+..-....+-+++
T Consensus 141 ~Ki~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 141 TKIKELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887777777664
No 170
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.34 E-value=1.1e+02 Score=34.58 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=93.4
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000646 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1376)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1376)
.-+..+.-+|+.+|...++.+..+.-....+++.+.++...+..+.........+.+|.++...-. ........+..+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~--~k~~~~~~~~~l 104 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI--EKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 456666777889999999999999999999999999999999999999988888887766554333 555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000646 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1376)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~ 436 (1376)
...+..+......+...+.+|+..+..+......|--....+..
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666655554544443
No 171
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.68 E-value=1.6e+02 Score=36.13 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=13.5
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 000646 980 EANNLNEKVSVLEGQIKS 997 (1376)
Q Consensus 980 ~~keL~~kl~~~e~~~~~ 997 (1376)
.+-+|-.||..||..++.
T Consensus 210 ~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 210 RAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 366777788888888776
No 172
>PRK11519 tyrosine kinase; Provisional
Probab=79.62 E-value=1.3e+02 Score=39.92 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhH-----HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGK-----EAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~-----e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1376)
..=++.++..+..++..++..+.. ++..+..- ....-+.+ ..+...+.+++.++..+..
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~----fr~~~~~vd~~~ea~~~l~~~----------~~l~~ql~~l~~~~~~l~~-- 332 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNA----FRQDKDSVDLPLEAKAVLDSM----------VNIDAQLNELTFKEAEISK-- 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCchHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH--
Confidence 566667777777777777777777 65544321 11111112 2333444333333333322
Q ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1242 AEQRGADSQKDSEREAALKSSLEELGAKNKEAAL 1275 (1376)
Q Consensus 1242 ~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~ 1275 (1376)
.|...++.. ....+.+..+..++..++..+..
T Consensus 333 -~y~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 333 -LYTKEHPAY-RTLLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred -HhcccCcHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777 55666666666666555554444
No 173
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.97 E-value=1e+02 Score=41.03 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhh-----HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAG-----KEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~-----~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1376)
+.=++.++..+..++..++..+.. ++.++.- .....-..+ ..+..++.+++.+. ..+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~----fr~~~~~~d~~~ea~~~l~~~----------~~l~~ql~~l~~~~----~~l 330 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNV----YRQQRDSVDLNLEAKAVLEQI----------VNVDNQLNELTFRE----AEI 330 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCCHHHHHHHHHH----------HHHHHHHHHHHHHH----HHH
Confidence 666777777777777778777777 6665421 111111222 33344443333222 222
Q ss_pred H-HhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1242 A-EQRGADSQKDSEREAALKSSLEELGAKNKEAAL 1275 (1376)
Q Consensus 1242 ~-~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~ 1275 (1376)
. .|..+++.. ..+...+..+..++..++..+..
T Consensus 331 ~~~~~~~hP~v-~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 331 SQLYKKDHPTY-RALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred HHHhcccCchH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 357777777 66666666666665555554443
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=78.73 E-value=2.9e+02 Score=38.60 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=7.2
Q ss_pred HHhccchHHHHHHHH
Q 000646 474 ATASQRNLELEDIIR 488 (1376)
Q Consensus 474 ~~~~qk~~EL~~qi~ 488 (1376)
.+++++..+...++.
T Consensus 147 ~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 147 TEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555544444443
No 175
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.70 E-value=2e+02 Score=36.62 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 506 PRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1376)
Q Consensus 506 ~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~L 581 (1376)
-....+++.++.|-..++.++.-..+......+|.+..+.|.+.+..+...+..+.--++.-...+..++.++...
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888899999999999999888888888888888888888888888743
No 176
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.07 E-value=1.2e+02 Score=33.98 Aligned_cols=182 Identities=20% Similarity=0.308 Sum_probs=83.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 324 QELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEK 403 (1376)
Q Consensus 324 ~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~k 403 (1376)
-+|-++|..+.+.+.++.-=...|-.|+.++......+......+ ..+...+..-...+....++|.......
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~-------~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQI-------QELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 356666666666655555444444444444444433333333333 3333333444444444444444444444
Q ss_pred HHHHHHHHHhHhhHHHhHhhhHHH---HHH---HhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhc
Q 000646 404 EALEAAMADLTGNIARMKELCSEL---EEK---LRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATAS 477 (1376)
Q Consensus 404 e~lE~~i~dL~s~i~eL~e~~eeL---Eee---L~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~ 477 (1376)
..+...+..|...+..|......+ ... +.....-...+.+.-.-..+-..+++.++..|-. .|
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~-----------er 151 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR-----------ER 151 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH-----------HH
Confidence 444444444554444444443333 000 0000000111111000112222344444444433 33
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHH
Q 000646 478 QRNLELEDIIRASNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLN 523 (1376)
Q Consensus 478 qk~~EL~~qi~~~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~Ql~ 523 (1376)
+++.+...-++.=+..+...|..+ +.|+..-..--+++..||..+.
T Consensus 152 ~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 152 QRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555666566666666655 7777777777777777776653
No 177
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=77.46 E-value=2.4e+02 Score=36.98 Aligned_cols=130 Identities=23% Similarity=0.294 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000646 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLA 849 (1376)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ 849 (1376)
+++|..+++++++-.+..|-...+ -.-|. .+|+.|+.-++.++..+..--.--+.++++..++..+-.+++
T Consensus 110 ~eekn~slqerLelaE~~l~qs~r-ae~lp--------eveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLR-AETLP--------EVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHh-hhhhh--------hhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887776665554 22222 678888887777777666655556899999999999988888
Q ss_pred HHHHH------------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHH
Q 000646 850 EAAGK------------------YALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV 911 (1376)
Q Consensus 850 ea~~k------------------~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i 911 (1376)
.|+.+ +.....|..+.+++...++...+.+.+.+.++.- ....|..-+.+|-+.+
T Consensus 181 rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~-------~k~rl~~d~E~Lr~e~ 253 (916)
T KOG0249|consen 181 RARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRH-------DKDKLRTDIEDLRGEL 253 (916)
T ss_pred HHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHH
Confidence 88833 3344555555555555555555555555555543 4555555666666666
Q ss_pred HHHH
Q 000646 912 AELQ 915 (1376)
Q Consensus 912 ~~Lq 915 (1376)
++|.
T Consensus 254 ~qL~ 257 (916)
T KOG0249|consen 254 DQLR 257 (916)
T ss_pred HHHH
Confidence 6665
No 178
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.45 E-value=64 Score=42.72 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHHHHHH
Q 000646 106 LERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEAL----QAEEAKRK 181 (1376)
Q Consensus 106 ~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~l----q~~~~~~~ 181 (1376)
+..+.....+|=.++..+.++...+.+..+++..+++++..+|..|..++...= ..+..++ .+|.++.+
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl-------~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL-------QLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCCHHHHHHHH
Confidence 333444455566677777777777777777777777777777777777322211 1111111 13448888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 182 ELAEVKEAFDGLSLEIEQSRSRLQELEHKLQ 212 (1376)
Q Consensus 182 ~L~~~ke~~e~~~~~l~~~kkk~q~~~~~L~ 212 (1376)
+|...+..+..+...+++-++++.-....+.
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8988888898899999998888877555443
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.13 E-value=56 Score=33.80 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=14.7
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccch
Q 000646 454 ELELKLKSLEEQHNETGAAAATASQRN 480 (1376)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1376)
++..+...+.+....|.+.+.++-.|.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444455555555555555555555554
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=77.08 E-value=57 Score=37.62 Aligned_cols=90 Identities=28% Similarity=0.296 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHH
Q 000646 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1376)
Q Consensus 837 lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe 916 (1376)
|..+.+..+........+..-+..+...+...-......+..+..++.++.. ....|..+..+-+.....|+.
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~-------~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA-------EIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333444444555555555555556666666666666665 344555666666666666666
Q ss_pred HHHHHhhhHHHHHHHHH
Q 000646 917 LLDSAISEKEATGQQLA 933 (1376)
Q Consensus 917 ~l~~~~~e~e~~~e~l~ 933 (1376)
+|..+....+.+..+|.
T Consensus 111 el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 111 ELEEAREDEEEAKEELL 127 (246)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555553
No 181
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.02 E-value=2e+02 Score=35.87 Aligned_cols=147 Identities=15% Similarity=0.241 Sum_probs=111.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000646 665 AEAGSKQYSDKVCELASELEAFQ---ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1376)
Q Consensus 665 ~eqel~el~~~l~~Lk~ELE~~e---ke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~ 741 (1376)
|.+....+-.++..++...+.+- .++..+...++.++.+.+.|++..+.+......+.....++-..++.+...+..
T Consensus 262 f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 262 FEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34444444455555555555444 455566668888889999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHH---HHHHHHHHHHHHHHHHHHHh----hhhhhhhhhHHHhhHhhhHHHH
Q 000646 742 LRNDLNMTQERLESIEKDLKAAGLRETDVME---KLKSAEEQLEQQTRVLEQAT----SRNSELESLHESLMRESEMKLQ 814 (1376)
Q Consensus 742 LR~El~l~q~k~eslE~~l~~~~~~eee~~~---k~k~~~~~l~~~~~~Le~e~----~~~~e~~~~~e~~~kk~E~~L~ 814 (1376)
.--++..++++.+.+...+...|+.-++|+. -|-.+-+.|+-+.-..+..+ ++..+++ ..-+.+|-.++
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq----~~~~slek~~~ 417 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ----GIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Confidence 8899999999999999999999999998863 46667777777777777776 4555566 66666666665
Q ss_pred H
Q 000646 815 D 815 (1376)
Q Consensus 815 e 815 (1376)
.
T Consensus 418 ~ 418 (622)
T COG5185 418 Q 418 (622)
T ss_pred H
Confidence 5
No 182
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=76.41 E-value=1.3e+02 Score=33.31 Aligned_cols=157 Identities=12% Similarity=0.157 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh--hHHH-------HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000646 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSL--NETY-------QNAKNELQSVISQLEAQLNEKKATEETFKSE 1156 (1376)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L--~~~~-------e~~~kEl~~~i~~le~qL~~k~~i~~~~~~e 1156 (1376)
.+..++.....+.+|+.+|.+|+.-....+..++.- ...+ ..--.+++..+..|+..-.+-.++. .-
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~----qv 82 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELA----QV 82 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHH----HH
Confidence 345777888899999999999888777776555210 0000 1113567777777777666655544 44
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000646 1157 IESLKAQAAE----KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQR 1232 (1376)
Q Consensus 1157 I~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~ 1232 (1376)
..-++..+.+ ...|..+|..|...+..+...+.. -...+...+ ..++.++-.=++
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~----ke~~~~~ee-----------------~~~~~y~~~eh~ 141 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ----KEAEWREEE-----------------ENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----------------HHHHhhhccccc
Confidence 4445555544 666666777777776666666665 333333333 333333333335
Q ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHH
Q 000646 1233 ELQIAQTAIAEQRGADSQKDSEREAALKSSLEELG 1267 (1376)
Q Consensus 1233 el~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~ 1267 (1376)
.|-.+|..+..++..++.+....++.|.....++.
T Consensus 142 rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 142 RLLSLWREVVALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56666666666655555554455555555555543
No 183
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.53 E-value=68 Score=37.27 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=40.0
Q ss_pred hccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE 555 (1376)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ 555 (1376)
+-||+.||+.|++-++---.---=+|+.|+..+.-...+...-......+.-....+.-....+.....++.-++.-++.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 45677788887775432111111123555554333333322222222233333333333333444444444445544444
Q ss_pred HHHHHHHHHHHHHH
Q 000646 556 EKKQLHDQMNDYKD 569 (1376)
Q Consensus 556 ELeele~klee~q~ 569 (1376)
.+.-+.++++....
T Consensus 96 qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 96 QVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 184
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=75.46 E-value=1.5e+02 Score=33.73 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 509 IAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMN 565 (1376)
Q Consensus 509 ~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~kle 565 (1376)
..++.++.....++..++..+......+..+......+...+......+.+....+.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444444444444444433
No 185
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.37 E-value=21 Score=40.00 Aligned_cols=78 Identities=27% Similarity=0.395 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000646 358 VSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1376)
Q Consensus 358 ~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~ 435 (1376)
...+.++.-++++.++.++.+.+.+.++++.+.+++..|..++.....++..+..|-.....|..-.++|++.+.-..
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 344556666888888999999999999999999999999999999999999888888888888877777777655443
No 186
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.25 E-value=2.4e+02 Score=37.66 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKL 1287 (1376)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL 1287 (1376)
-...++.+.+-|.....+|..+=++|+.+...+
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666667777777777777777776654
No 187
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.15 E-value=3.6e+02 Score=37.78 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHhhhccccchh
Q 000646 874 STNEELQRQVVEANNKANNSSSEN 897 (1376)
Q Consensus 874 ~~~~~~e~e~~e~~~~~~~~~~~~ 897 (1376)
..++.+..-+.....+++.....+
T Consensus 493 ~~r~~~~~~l~~~~~~vg~v~~D~ 516 (1109)
T PRK10929 493 SSRRHYHAFLERSSSRVGKVTQDH 516 (1109)
T ss_pred HHHHHHHHHHHHHHHhcCCccccc
Confidence 446666666666666665554443
No 188
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.03 E-value=2.1e+02 Score=34.49 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=51.8
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1205 ELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQ---KDSEREAALKSSLEELGAKNKEAALLQNKV 1280 (1376)
Q Consensus 1205 ~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sq---L~~e~e~~lk~~~~ei~~l~~ei~~l~~eI 1280 (1376)
.+++-+.+-...+.|||.+...+ ++| |+.+..- .|.+.. . ..+-.+.+.+.+.|..+..+...+-.-|
T Consensus 148 d~qs~lDEkeEl~~ERD~yk~K~----~RL---N~ELn~~L~g~~~rivDI-DaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 148 DLQSLLDEKEELVTERDAYKCKA----HRL---NHELNYILNGDENRIVDI-DALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHhCCCCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445678889998888 444 6665333 555555 4 5566778888888888888888888888
Q ss_pred HHHHHHHH
Q 000646 1281 AELEQKLQ 1288 (1376)
Q Consensus 1281 n~leqkL~ 1288 (1376)
+....=|.
T Consensus 220 ~KYK~~le 227 (319)
T PF09789_consen 220 NKYKSALE 227 (319)
T ss_pred HHHHHHHH
Confidence 88877554
No 189
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=73.49 E-value=2.3e+02 Score=34.79 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.5
Q ss_pred chhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Q 000646 895 SENELLVETNNQLKSKVAELQELLDSAISEKEAT 928 (1376)
Q Consensus 895 ~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~ 928 (1376)
++...+..-..||.-+|.+|.+++....+.....
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKES 120 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4566777888888888888888887776655443
No 190
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.26 E-value=2.1e+02 Score=34.28 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000646 683 LEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1376)
Q Consensus 683 LE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~L 739 (1376)
+..+...+......+...+....++..++..+...+......+.++..++.++++.+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555555555555555555555555555544
No 191
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.27 E-value=2.5e+02 Score=34.69 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=24.4
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 000646 974 FTQRDIEANNLNEKVSVLEGQIKSYEEQA 1002 (1376)
Q Consensus 974 ~~~~e~~~keL~~kl~~~e~~~~~~~~~~ 1002 (1376)
..-++.++..++.+|.+.|..+..|..+-
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678899999999999999999988653
No 192
>PF15294 Leu_zip: Leucine zipper
Probab=72.23 E-value=1.1e+02 Score=35.93 Aligned_cols=120 Identities=20% Similarity=0.298 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHH
Q 000646 1084 EQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQ---LNEKKATEETFKSEIESL 1160 (1376)
Q Consensus 1084 eELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~q---L~~k~~i~~~~~~eI~~l 1160 (1376)
.=|+..+.+++..-.+|+.++..+..+--.+.++.+.+ ...+++++...++.... ....+.+. .|+..+.-+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl----~~~L~~lq~~~~~~~~k~~~~~~~q~l~-dLE~k~a~l 202 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL----EAQLKELQDEQGDQKGKKDLSFKAQDLS-DLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccccccccccchh-hHHHHHHHH
Confidence 33555666777777777777777777777777777666 66666666644443331 11111221 233555555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhh
Q 000646 1161 KAQAAE-KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLED 1212 (1376)
Q Consensus 1161 k~~~~e-~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~ 1212 (1376)
+..+.. ..........|...+..+...+-. ++...+..+.++..+++.
T Consensus 203 K~e~ek~~~d~~~~~k~L~e~L~~~KhelL~----~QeqL~~aekeLekKfqq 251 (278)
T PF15294_consen 203 KSELEKALQDKESQQKALEETLQSCKHELLR----VQEQLSLAEKELEKKFQQ 251 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhcchhhHHHHhCc
Confidence 555544 555555666666666666666555 666666666666666644
No 193
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.91 E-value=3e+02 Score=35.48 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHh------HhhhHHHHHHHhhh
Q 000646 387 AQVSNVNEELDKVSKEKEALEAAMADLTGNIARM------KELCSELEEKLRNS 434 (1376)
Q Consensus 387 ae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL------~e~~eeLEeeL~~~ 434 (1376)
..+..+...|..+..........++-+.-.+.++ +..+++|+.+.+..
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHH
Confidence 3333333334444443334444444443333333 23334455544443
No 194
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.40 E-value=32 Score=40.98 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhH
Q 000646 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1376)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~ 925 (1376)
...++....+..++.|-..+...|..+|..+.++..++..++.+...+..+-.......+.+.-.+.++++++.+..+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777788888888888888887777776666665666666667777777777777776666666
Q ss_pred HHHHHHHHhhh
Q 000646 926 EATGQQLASHM 936 (1376)
Q Consensus 926 e~~~e~l~~~~ 936 (1376)
.-+.+++.+..
T Consensus 123 ~~~~~~L~~L~ 133 (314)
T PF04111_consen 123 EYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 195
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.13 E-value=2.4e+02 Score=34.03 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhh-----HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAG-----KEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI 1241 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~-----~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I 1241 (1376)
..-++.++..++.++..|+..+.+ ++..+.. ........+ ..|...+.+++.++..+.
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~----fr~~~~~~d~~~~~~~~~~~i----------~~L~~~l~~~~~~l~~l~--- 234 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLK----YQIKNKVFDPKAQSSAQLSLI----------STLEGELIRVQAQLAQLR--- 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCcChHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH---
Confidence 667778888888888888888888 6665422 111222233 344444433444433322
Q ss_pred HHh-hcCccchHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1242 AEQ-RGADSQKDSEREAALKSSLEELGAKNKEA 1273 (1376)
Q Consensus 1242 ~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei 1273 (1376)
.| ...+|.. ..+...+..+...|......+
T Consensus 235 -~~~~~~~P~v-~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 235 -SITPEQNPQV-PSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred -hhCCCCCCch-HHHHHHHHHHHHHHHHHHHHh
Confidence 34 5557888 778888888888777766655
No 196
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.61 E-value=1.8e+02 Score=32.49 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=80.2
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000646 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1376)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1376)
.-++..+-++...+..++..+....-....+++.+.++...+..+............|..+.. +...+......+..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--al~~k~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--ALQRKADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 334555666888888888899998889999999999999999988888888877776655433 334444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHh
Q 000646 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLR 432 (1376)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~ 432 (1376)
...+.........+...+..+...+.++......|--...
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666555555555544444333
No 197
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.04 E-value=2.1e+02 Score=32.82 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH-----------HHHhhcccc-hhhhhHHHHHHHH
Q 000646 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-----------ALANITSRD-SEAKSFSEKLKNL 837 (1376)
Q Consensus 770 ~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~e-----------al~~~~~~~-~Ea~~l~k~L~~l 837 (1376)
.++-.+-+..-|+.++.+|-..+...+.+. ...+.+|.++++ |...+..++ +=|..+-..-..|
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~----a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~l 97 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAI----ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSL 97 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344446666667777777777777666666 444555544444 333444443 3345555777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--Hh---hhccccchhhhhHHHHHHhHHHHH
Q 000646 838 EGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA--NN---KANNSSSENELLVETNNQLKSKVA 912 (1376)
Q Consensus 838 q~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~--~~---~~~~~~~~~~~L~~~k~~Le~~i~ 912 (1376)
+.+++.|+..+..+.....-|+..+..+..++..+......+.....-. .. ++.++.+. +.-.....+.+.+|.
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fer~e~kie 176 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHH
Confidence 8888888888888888878888888877777777777666554432221 22 22222222 344566777778887
Q ss_pred HHHHHHHH
Q 000646 913 ELQELLDS 920 (1376)
Q Consensus 913 ~Lqe~l~~ 920 (1376)
..+...+.
T Consensus 177 e~ea~a~~ 184 (225)
T COG1842 177 EREARAEA 184 (225)
T ss_pred HHHHHHHH
Confidence 77665543
No 198
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.00 E-value=1.9e+02 Score=32.39 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=22.6
Q ss_pred hhhHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHh
Q 000646 422 ELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATA 476 (1376)
Q Consensus 422 e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~ 476 (1376)
+|..-|+-.++.....+.+....+...-++.-.++.....++..+...+.+|..+
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444433333
No 199
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.14 E-value=26 Score=33.05 Aligned_cols=64 Identities=33% Similarity=0.269 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhH
Q 000646 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1376)
Q Consensus 862 le~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~ 925 (1376)
++++..++.++=-++..++.++.++..+...+..+|..|..+|.+|..+-...++.|+...+-.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666667777777777776666667777777777777777777777666665443
No 200
>PRK10698 phage shock protein PspA; Provisional
Probab=67.29 E-value=2.3e+02 Score=32.28 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=91.3
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000646 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1376)
Q Consensus 313 ~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL 392 (1376)
.-++.+.-+|+.++..++..+..+.-+...+++.+.++...+..+...-.....+.+|.++...-..+ ......+..+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K--~~~~~~~~~l 104 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK--QKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999988888888776655533333 3345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHh
Q 000646 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1376)
Q Consensus 393 ~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~ 436 (1376)
...+.........+...+..|...+.+++.....|--.......
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777776666666554444443
No 201
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=66.68 E-value=3.4e+02 Score=34.05 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000646 567 YKDKITQLELILNQSNTRSSELEEELRI 594 (1376)
Q Consensus 567 ~q~kIs~LEsqLk~LqsrireLEEele~ 594 (1376)
+...+..+...+..++.++.-++.++..
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~ 512 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSE 512 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 202
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.98 E-value=1.1e+02 Score=32.26 Aligned_cols=93 Identities=12% Similarity=0.257 Sum_probs=52.2
Q ss_pred hHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 000646 1040 FERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENN 1119 (1376)
Q Consensus 1040 lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~ 1119 (1376)
+...++....++.+|...+..+..++..+..++. -++.....+...++.+...++.++.+......-+.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-----------~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA-----------SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666666666666665532 12223344445555555555555555555555555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHH
Q 000646 1120 SLNETYQNAKNELQSVISQLEAQL 1143 (1376)
Q Consensus 1120 ~L~~~~e~~~kEl~~~i~~le~qL 1143 (1376)
...++|...+|-.+..|..+...|
T Consensus 126 ~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666665555544
No 203
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.19 E-value=4.9e+02 Score=35.30 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 480 NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ 559 (1376)
Q Consensus 480 ~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELee 559 (1376)
+++|.+|||.+-++. .-+..|...+-+.+.+.+.|+..+..++.=-.--+.-+....+..-.|+.+|..+..-..+
T Consensus 433 iadlkEQVDAAlGAE----~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~ke 508 (1243)
T KOG0971|consen 433 IADLKEQVDAALGAE----EMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKE 508 (1243)
T ss_pred HHHHHHHHHHhhcHH----HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355566666533322 2336777778888999999999887765432222222233334455666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000646 560 LHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKE 597 (1376)
Q Consensus 560 le~klee~q~kIs~LEsqLk~LqsrireLEEele~L~E 597 (1376)
++.+++..+..+-.+...|..+...+..|.+.+..+..
T Consensus 509 l~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 509 LQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777666666666666655544
No 204
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.09 E-value=2.5e+02 Score=31.65 Aligned_cols=54 Identities=30% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1137 SQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1137 ~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
+.++.+|-.+..+...|..++..++.-..-....+.+|..|+.++..+.+....
T Consensus 50 ~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 50 SELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555554444444555555555555555555444444
No 205
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.67 E-value=43 Score=31.23 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=40.7
Q ss_pred HhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 000646 807 RESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA 886 (1376)
Q Consensus 807 kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~ 886 (1376)
.++|.+++.|+|+++ -+|-++++...+.++|..|....+....++++.+++++++-..-
T Consensus 7 ekLE~KiqqAvdTI~---------------------LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 7 EKLEAKVQQAIDTIT---------------------LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777644 45666666666667777777766666777777777776655444
Q ss_pred Hhh
Q 000646 887 NNK 889 (1376)
Q Consensus 887 ~~~ 889 (1376)
.++
T Consensus 66 Qer 68 (79)
T COG3074 66 QER 68 (79)
T ss_pred HHH
Confidence 443
No 206
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=63.54 E-value=5.8e+02 Score=35.63 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHh
Q 000646 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESL 805 (1376)
Q Consensus 756 lE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~~~~e~~ 805 (1376)
+...|...|+.+........-....+..+...+.........+......+
T Consensus 754 ~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 754 FDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667776665544444444555566666666666666555333333
No 207
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=63.36 E-value=1.4e+02 Score=37.95 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1376)
Q Consensus 334 ~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL 413 (1376)
.+....+.++-..+.........+..++..|..+++-....+......+......+..++.+|.+-+. ..+.+++.|
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~M 492 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR---NYEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHH
Confidence 45666677777777778888889999999999999988889999999999999999999999887665 478999999
Q ss_pred HhhHHHhHhhhHHHHHHHhhh
Q 000646 414 TGNIARMKELCSELEEKLRNS 434 (1376)
Q Consensus 414 ~s~i~eL~e~~eeLEeeL~~~ 434 (1376)
...+..|++.+..-.++++..
T Consensus 493 SEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 493 SEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888765
No 208
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.92 E-value=4e+02 Score=34.03 Aligned_cols=108 Identities=23% Similarity=0.310 Sum_probs=83.7
Q ss_pred cchhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhh
Q 000646 823 RDSEAKSFSEKL--KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL 900 (1376)
Q Consensus 823 ~~~Ea~~l~k~L--~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L 900 (1376)
.+.+.. ++| .-+...|.++-.++.-+.-|+..+.+|-..+...|..++..++.+..++..+...+..+..+ |
T Consensus 405 ~E~esR---E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L 478 (518)
T PF10212_consen 405 PEEESR---EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---L 478 (518)
T ss_pred CchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 345555 443 45788999999999999999999999999999999999999888888887777755554433 5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHH
Q 000646 901 VETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELT 943 (1376)
Q Consensus 901 ~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~ 943 (1376)
.-+.+.||.-|+-|-|-|-+ ++++|.+-...|+.|-
T Consensus 479 ~TTr~NYE~QLs~MSEHLas-------mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 479 ETTRRNYEEQLSMMSEHLAS-------MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 66888999999888877654 4667777777776664
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.18 E-value=1.7e+02 Score=33.61 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHH
Q 000646 376 ESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEE 429 (1376)
Q Consensus 376 ~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEe 429 (1376)
....+.|....+++..+..-+...+..+......+..+......|.+...++..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555444444444444433
No 210
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.66 E-value=4.7e+02 Score=33.97 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=91.0
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 329 IKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEA 408 (1376)
Q Consensus 329 ~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~ 408 (1376)
+...+.-+.+++..-...|.+|+.=|+.+...|....--++.+.--++.+..+.-.+.+.+++|.=.+..++..+.-.++
T Consensus 123 L~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~ 202 (861)
T KOG1899|consen 123 LQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEK 202 (861)
T ss_pred heehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 33466677777777778888888888888888888888888888888888877777788888777777777777777777
Q ss_pred HHHHhHhhHHHhHhh-hHHHHHHHhhhHhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch
Q 000646 409 AMADLTGNIARMKEL-CSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1376)
Q Consensus 409 ~i~dL~s~i~eL~e~-~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1376)
..++-+.-|.+++.. ..++..+--+..-..+-+ +.|+.-|+-.+.++..+-......+.++.
T Consensus 203 K~R~se~l~qevn~~kv~e~~~erlqye~klkst----------k~e~a~L~Eq~~eK~~e~~rl~~~lv~~~ 265 (861)
T KOG1899|consen 203 KLRLSENLMQEVNQSKVGEVVQERLQYETKLKST----------KGEMAPLREQRSEKNDEEMRLLRTLVQRL 265 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------cchhhhHHHHHhhhhhHHHHHHHHHHHHH
Confidence 776666666555422 122222222222222222 23666666666665555554444444443
No 211
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.42 E-value=2.5e+02 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 676 VCELASELEAFQARTSSLEVALQMA 700 (1376)
Q Consensus 676 l~~Lk~ELE~~eke~relEt~L~e~ 700 (1376)
......+|..++.++..++..+..+
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444333333
No 212
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.91 E-value=3.7e+02 Score=34.16 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 676 VCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLES 755 (1376)
Q Consensus 676 l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~es 755 (1376)
+.+....+-....++..+.+.+...++....|..++-++.+.++-+-.+++++...|...-+.-..+..|+..++.+-..
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555666666666678888888888888888888888888877777777777777666666554
Q ss_pred HHHHHHHh
Q 000646 756 IEKDLKAA 763 (1376)
Q Consensus 756 lE~~l~~~ 763 (1376)
..+.+++.
T Consensus 287 ~m~~~~Ea 294 (596)
T KOG4360|consen 287 CMQMLHEA 294 (596)
T ss_pred HHHHHHHH
Confidence 55545444
No 213
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.64 E-value=86 Score=33.79 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=47.7
Q ss_pred hhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 1044 SGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1376)
Q Consensus 1044 lr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1376)
+...-..|..|..++..+...++.|..+|. ...+.-|.++|...+..+...+..+..++..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~--~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELA--SLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444566677777777777777777775 4556677788888888888888888888888876
No 214
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=60.40 E-value=13 Score=44.21 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000646 512 EQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEE 591 (1376)
Q Consensus 512 Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEe 591 (1376)
..++..|...++.+..-+.+....++.+...+..++..+..+...+..+...+......|..|+..+..+...+.+|...
T Consensus 55 ss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 55 SSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 33333444444444444444444444444444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhHHHHhh
Q 000646 592 LRITKERSAEDEDRAN 607 (1376)
Q Consensus 592 le~L~EeLeE~e~rak 607 (1376)
+....-.+...+.|.+
T Consensus 135 VSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 135 VSTQALNITDLESRVK 150 (326)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhcchHhhHHHHHH
Confidence 5544444444444433
No 215
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.04 E-value=3.5e+02 Score=34.76 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 1054 LTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT 1109 (1376)
Q Consensus 1054 L~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~ 1109 (1376)
..++|+.+..++.++.+-. -.+++.-+-+|+....+.+...|-|+-+++++.+
T Consensus 435 ~~~Ei~~~QA~M~E~~Dt~---~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 435 TTTELRKEQAQMNELKDTV---FKSDVQKVISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 3467777777666666542 2445555666666777777777777777776666
No 216
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.88 E-value=3.5e+02 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHh---hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1232 RELQIAQTAIAEQ---RGADSQKDSEREAALKSSLEELGAKNKEAALLQN 1278 (1376)
Q Consensus 1232 ~el~~l~~~I~~y---~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~ 1278 (1376)
.+|......|..- ..+.+-| -....+|..+..+|..+.-.|..++.
T Consensus 308 eeLe~vK~emeerg~~mtD~sPl-v~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 308 EELEQVKQEMEERGSSMTDGSPL-VKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHHHHHhhhhhheehh
Confidence 5555555666655 2233445 45677777777777776666665543
No 217
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.35 E-value=17 Score=43.17 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000646 520 QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1376)
Q Consensus 520 ~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLE 589 (1376)
..+..++..++.+...+..+...+......|..+...+..+...+..++..++.+.-.+..++.|+..||
T Consensus 84 stV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 84 STVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 3333444444444444444444444444444444444444444444444444444444444444444443
No 218
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=57.87 E-value=5.8e+02 Score=33.79 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=42.2
Q ss_pred HHHhccchHHHHHHHHHh-----HHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 000646 473 AATASQRNLELEDIIRAS-----NEAAEEAKSQL--RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQ 545 (1376)
Q Consensus 473 ~~~~~qk~~EL~~qi~~~-----~~~~Ek~k~~l--~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklsk 545 (1376)
++...-+..+++.++... ++.....+.++ ......+.+.+-++..++.-+-..+.....+.+ -..+
T Consensus 23 ~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d-------~ndk 95 (916)
T KOG0249|consen 23 LAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHD-------LNDK 95 (916)
T ss_pred cCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCccc-------chHH
Confidence 333444446666666553 23333333333 333333444444444444444433333333333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1376)
Q Consensus 546 Lq~EL~elE~ELeele~klee~q~kIs~LEsqLk 579 (1376)
+..+|.+....+.....++..++..+..++.++.
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 4444444444444444444444444444444443
No 219
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=55.90 E-value=7.6e+02 Score=34.54 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 387 AQVSNVNEELDKVSKEKEALEAAMA 411 (1376)
Q Consensus 387 ae~~eL~eELe~l~~~ke~lE~~i~ 411 (1376)
..+......+..+......+.....
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~ 281 (1047)
T PRK10246 257 QEASRRQQALQQALAAEEKAQPQLA 281 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444444444444444444443333
No 220
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.39 E-value=1.4e+02 Score=33.61 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhh
Q 000646 1170 LETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKL 1210 (1376)
Q Consensus 1170 le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~ 1210 (1376)
+...+..|+.++..++++|.+ +...+......++..+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~----~~~~~~~~~~~l~~~~ 127 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN----IDNTWNQRTAEMQQKV 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 344566666667667777776 5555555555555544
No 221
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.09 E-value=3.7e+02 Score=30.68 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=10.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 502 RELEPRFIAAEQRSVELEQQLNLV 525 (1376)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~el 525 (1376)
..+......+=..+..+..++..+
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh
Confidence 344444444444444444444443
No 222
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.93 E-value=6.4e+02 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Q 000646 1084 EQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEE-TFKSEIESLKA 1162 (1376)
Q Consensus 1084 eELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~-~~~~eI~~lk~ 1162 (1376)
++.-.+...+......|...+...+..+.......... ++-..+.......+...|...+.+-+ ++...+.+..+
T Consensus 510 EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~A----r~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEs 585 (739)
T PF07111_consen 510 EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAA----RKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVES 585 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555666666666666666666666665555555 55555555555555555555554442 33334444444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1163 QAAE-KFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1163 ~~~e-~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
...+ ....+.++++-.++..+|=..|..
T Consensus 586 rl~E~L~~~E~rLNeARREHtKaVVsLRQ 614 (739)
T PF07111_consen 586 RLREQLSEMEKRLNEARREHTKAVVSLRQ 614 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 444444444444444444333333
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.20 E-value=2.2e+02 Score=34.16 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000646 670 KQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1376)
Q Consensus 670 ~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqLeElE~~L 739 (1376)
..+...+..+..+.+.+..++..++.....+......+-...+.+.-....+..+...+..++.-....+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444433333333333333333333333333333333333333333333333
No 224
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.02 E-value=6e+02 Score=32.80 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.3
Q ss_pred hhHHHHHHHHh
Q 000646 809 SEMKLQDALAN 819 (1376)
Q Consensus 809 ~E~~L~eal~~ 819 (1376)
++..++..|..
T Consensus 380 l~~~v~~~l~~ 390 (563)
T TIGR00634 380 LAKRVEQELKA 390 (563)
T ss_pred HHHHHHHHHHh
Confidence 33334443333
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.22 E-value=4.2e+02 Score=30.76 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 573 QLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 573 ~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.|++++..+.+|.+.|+.....+.-++.-
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQER 77 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666555555555554444
No 226
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=52.53 E-value=6.2e+02 Score=32.51 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 000646 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTR 786 (1376)
Q Consensus 707 L~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~ 786 (1376)
-...+++++..+.-.+..+..+...+.++-..-..=+.++..+..+.+.+-+++.+. ...+=+....+.++|+..+.
T Consensus 102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n---~~~~Ge~~~~lEk~Le~i~~ 178 (570)
T COG4477 102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLAN---RHQYGEAAPELEKKLENIEE 178 (570)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777888888888888888888887 55555666666666666665
Q ss_pred HH---HHHhhhhhhhh
Q 000646 787 VL---EQATSRNSELE 799 (1376)
Q Consensus 787 ~L---e~e~~~~~e~~ 799 (1376)
.| +..++++.=++
T Consensus 179 ~l~qf~~lt~~Gd~ie 194 (570)
T COG4477 179 ELSQFVELTSSGDYIE 194 (570)
T ss_pred HHHHHHHhccCCChhH
Confidence 55 33444444333
No 227
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.01 E-value=4.4e+02 Score=30.62 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000646 841 VKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE 878 (1376)
Q Consensus 841 ik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~ 878 (1376)
..+|...+.-|-.+..-|+.||.+-...|....|-+.+
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555556666666666666555555444444444
No 228
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.62 E-value=3.8e+02 Score=29.97 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 490 SNEAAEEAKSQLRELEPR---FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMND 566 (1376)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~---~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee 566 (1376)
+.+.++.....+..|+.. ......++.. +-.+.......-.....+..++.........++..+..+..++..
T Consensus 67 ~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 67 SRSSFESLMKTLSELEEHGFNVKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred cHHHHHHHHHHHHHHHHcCCccHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556666666666555543 2223333322 334444455555556666666666666666666666667766666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 567 YKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 567 ~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
++.....+..........+..++...+.+.+.+..
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666655
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.61 E-value=3.9e+02 Score=29.88 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhh
Q 000646 355 HAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNS 434 (1376)
Q Consensus 355 ~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~ 434 (1376)
..+-.+...+..++.+.-.........|.+++..+.+++.....+...+......|..+.+....+.+.+...+-....+
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444455567777888888888888888888888899999889888888888888877777666554
No 230
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.79 E-value=3.1e+02 Score=33.61 Aligned_cols=98 Identities=13% Similarity=0.230 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1376)
Q Consensus 322 ~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~ 401 (1376)
.+.+-+-|+..+.+.+.-.......+.++...|.+...++....-|| ...-.-+...+..+-+.+......|...+.
T Consensus 211 ~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI---~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 211 IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI---ESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455677777788777788888888888888888888887777777 122222233444444444455555555555
Q ss_pred HHHHHHHHHHHhHhhHHHhHh
Q 000646 402 EKEALEAAMADLTGNIARMKE 422 (1376)
Q Consensus 402 ~ke~lE~~i~dL~s~i~eL~e 422 (1376)
....+...+..+...+.++.+
T Consensus 288 ~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555444444444433
No 231
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.78 E-value=6.6e+02 Score=32.30 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000646 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1376)
Q Consensus 534 rei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~~r 610 (1376)
..|..+......|+..+..+...+.+....+..|+.-.++|-+..-....++..++--+++-.++|-..+..+.-.+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666667777777777778888888888888888888888888777777776666554444444
No 232
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=50.74 E-value=4.8e+02 Score=30.73 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000646 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMT 749 (1376)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~ 749 (1376)
+....-|+..+...+.+++-++..+..++.+++-.
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554433
No 233
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=50.54 E-value=4.2e+02 Score=29.97 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 000646 659 EKKCEEAEAGSKQYSDKV 676 (1376)
Q Consensus 659 EKK~k~~eqel~el~~~l 676 (1376)
+.....|+.+...|.+..
T Consensus 155 e~q~~~Fe~ER~~W~eEK 172 (202)
T PF06818_consen 155 EEQRSSFEQERRTWQEEK 172 (202)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333456666666665443
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.93 E-value=2.1e+02 Score=32.25 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000646 342 ALDNLLADAKENLHAKV 358 (1376)
Q Consensus 342 ~le~~~~eL~~~l~~k~ 358 (1376)
.++.++.+++.++....
T Consensus 97 ~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 97 DLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 235
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.26 E-value=1.9e+02 Score=26.62 Aligned_cols=58 Identities=16% Similarity=0.352 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhH
Q 000646 364 IKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1376)
Q Consensus 364 l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~ 421 (1376)
|++-++.|+..+..+...+.........+...|.........+...|..|...+.+++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566667777777777777777777777777777777777777777776555543
No 236
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.53 E-value=5.1e+02 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1257 AALKSSLEELGAKNKEAALLQNKVAELEQKLQQ 1289 (1376)
Q Consensus 1257 ~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~d 1289 (1376)
.....+..+|..-...|..+..+|..|...+..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~ 218 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555543
No 237
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.35 E-value=1.7e+02 Score=33.16 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhH
Q 000646 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1376)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~ 925 (1376)
+...+.+.++.-+..|-+.++..|.-+ +.+..+..+++-.+..+|+.|.+..++|.+++..|...+++.....
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleel-------e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEEL-------EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 334444444554555555555444333 3333334444444445777787888888888888888777776555
Q ss_pred HHH
Q 000646 926 EAT 928 (1376)
Q Consensus 926 e~~ 928 (1376)
+..
T Consensus 208 El~ 210 (290)
T COG4026 208 ELP 210 (290)
T ss_pred cch
Confidence 444
No 238
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=48.33 E-value=94 Score=29.13 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 000646 874 STNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDS 920 (1376)
Q Consensus 874 ~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~ 920 (1376)
..++.+-.+++.+...+... ..++..|.+++..|..+|++
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a-------~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDA-------YEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555444333 34444444444444444443
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.42 E-value=2.3e+02 Score=26.83 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH 561 (1376)
Q Consensus 519 E~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele 561 (1376)
..+|..|...-..+....-.+...|.+|+..+...+..+..+.
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333333333333334444444433333333333
No 240
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.91 E-value=1.6e+02 Score=30.90 Aligned_cols=78 Identities=8% Similarity=0.305 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhhhHHHHHhCCCH----HHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 000646 280 VEEELKRSNTEISAIQEELGLSK----LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLH 355 (1376)
Q Consensus 280 ~ee~ls~~~~eL~~~~e~lglsK----aiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~ 355 (1376)
+..........|+.+.+.+...| +-|+.|-.++|....+.+.+..++..++.++.++..+++.....+..|...|.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666 67788888888888888888888888888888888888888887777777665
Q ss_pred HH
Q 000646 356 AK 357 (1376)
Q Consensus 356 ~k 357 (1376)
..
T Consensus 121 ~i 122 (126)
T PF07889_consen 121 EI 122 (126)
T ss_pred HH
Confidence 43
No 241
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.85 E-value=4.8e+02 Score=29.95 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000646 657 KLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGY 728 (1376)
Q Consensus 657 ~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqleelek~k~~LE~EieEl 728 (1376)
...+++..+..+...+...+..+..+++.+......++..+...+..+.+|..+++.+......+.--...+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666666666666666665555555554444433
No 242
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.81 E-value=9.3e+02 Score=32.93 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHH
Q 000646 833 KLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVA 912 (1376)
Q Consensus 833 ~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~ 912 (1376)
.+..+..||.-++..+-...+ .++-+|+..+..+...++..+..+.++..+....+....-.+......+.++-+.++
T Consensus 331 ~~~~lK~ql~~l~~ell~~~~--~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~ 408 (913)
T KOG0244|consen 331 EMLKLKAQLEPLQVELLSKAG--DELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTD 408 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHH
Confidence 455566666666666554431 226688899999999999999999999999998888888888888899988888887
Q ss_pred HHHHHHHHHh
Q 000646 913 ELQELLDSAI 922 (1376)
Q Consensus 913 ~Lqe~l~~~~ 922 (1376)
...+.+...-
T Consensus 409 ~~~~~~~~~~ 418 (913)
T KOG0244|consen 409 SCMNLLSEDS 418 (913)
T ss_pred HHHHHHHHhH
Confidence 7777666554
No 243
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=46.49 E-value=1.2e+02 Score=27.49 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 000646 1083 VEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNET 1124 (1376)
Q Consensus 1083 veELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~ 1124 (1376)
+++|-...+.++.++..|..+++.++.+...+.+|+.+.|..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888888888888888887543
No 244
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.02 E-value=5.6e+02 Score=30.09 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 000646 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTR 786 (1376)
Q Consensus 707 L~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~ 786 (1376)
+.....+++.-..+.+..+..+..++..+.+.+...+.+|+.+--..+ .|==+.+. .+.+-.++++.-=.+++.
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~v-----qIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAV-----QIANLVRQLQQLKDSQQD 138 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 444445555666666677777777777777777777777766655555 33222221 112222222222233444
Q ss_pred HHHHHh-hhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 787 VLEQAT-SRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSY 865 (1376)
Q Consensus 787 ~Le~e~-~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~ 865 (1376)
+|++.. -.+.++ .+|+.+++..-...+..-++-. +..|+.-+-.-...+..|..|+..+
T Consensus 139 Eldel~e~~~~el--------~~l~~~~q~k~~~il~~~~~k~------------~~~~~~~l~~~~~~N~~m~kei~~~ 198 (258)
T PF15397_consen 139 ELDELNEMRQMEL--------ASLSRKIQEKKEEILSSAAEKT------------QSPMQPALLQRTLENQVMQKEIVQF 198 (258)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH------------HhhchHHHHHHHHHHHHHHHHHHHH
Confidence 454442 222333 3555555543333332222222 2333333333334556666677766
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHh
Q 000646 866 FIKVTSLESTNEELQRQVVEANN 888 (1376)
Q Consensus 866 ~~~l~~~E~~~~~~e~e~~e~~~ 888 (1376)
+..+..++-.+-.++.++..+..
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555543
No 245
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.82 E-value=9.6e+02 Score=32.77 Aligned_cols=96 Identities=23% Similarity=0.186 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000646 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRG 1246 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y~~ 1246 (1376)
+..-+.+|.+|..........|.+ ++.+.+-.+..|..-- ..-...| +-|......
T Consensus 957 le~re~eikeLkk~aKmkqeelSe----~qvRldmaEkkLss~~----------k~~~h~v----~~~~ek~ee------ 1012 (1243)
T KOG0971|consen 957 LEDRETEIKELKKSAKMKQEELSE----AQVRLDLAEKKLSSAA----------KDADHRV----EKVQEKLEE------ 1012 (1243)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHhhhhh----------hhHhHHH----HHHHHHHHH------
Confidence 566666777777777777777777 7777777776666433 1111112 111111111
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1247 ADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQA 1290 (1376)
Q Consensus 1247 ~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dS 1290 (1376)
...-+.+.=+.+.+.|+.+..+|+.++.+-.++.++++.-
T Consensus 1013 ----~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~ 1052 (1243)
T KOG0971|consen 1013 ----TQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQ 1052 (1243)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Confidence 1122344556677779999999999999999999998763
No 246
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.35 E-value=7.1e+02 Score=31.15 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=5.9
Q ss_pred HHHHHHHHHhHHHHHH
Q 000646 481 LELEDIIRASNEAAEE 496 (1376)
Q Consensus 481 ~EL~~qi~~~~~~~Ek 496 (1376)
..+..++......+..
T Consensus 175 ~~~~~~i~~~~~~~~~ 190 (457)
T TIGR01000 175 AQLDQQISKTDQKLQD 190 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 247
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.27 E-value=6.2e+02 Score=30.43 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh-------HHH---------HHHHHHHHHH
Q 000646 678 ELASELEAFQARTSSLEVALQMANDK-ERELTESLNAAADEKRKLQDTSNG-------YNE---------KLAEAENLLE 740 (1376)
Q Consensus 678 ~Lk~ELE~~eke~relEt~L~e~~ek-~reL~eqleelek~k~~LE~EieE-------lke---------qLeElE~~Le 740 (1376)
.+..+++.+..+.-.++..|..-+.. +..|..+.+.+...++.|+..+.. ... -..-..+.+.
T Consensus 153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~ 232 (310)
T PF09755_consen 153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIR 232 (310)
T ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHH
Confidence 34444555555555566655444333 455666666666666666666542 110 1123444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000646 741 LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1376)
Q Consensus 741 ~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~ 795 (1376)
.||.++.-+...+...+.+-.++ ...+...-+....--..++..|..+..++
T Consensus 233 ~Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 233 SLRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666665555544444 33333333333333334444444444433
No 248
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=44.99 E-value=7.1e+02 Score=31.69 Aligned_cols=139 Identities=24% Similarity=0.250 Sum_probs=92.6
Q ss_pred cccchhhhhhhhhccccccccCcccccccCCCccccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhhH
Q 000646 46 LDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQD 125 (1376)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~ 125 (1376)
.=||-||==-=.|++--...-|+|-+++| ...+-|++|||.+-..-.--+++.+.-....-.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPLsPgE------------------~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~ 119 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPLSPGE------------------QGLQRKLKELEDEQKEDEVREKHNKKIIEKFGN 119 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCCCHhH------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44666665444566655666777777776 567899999999988888888888877777777
Q ss_pred HHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhh
Q 000646 126 DVLITKEKLEE-------SGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA-----KRKELAEVKEAFDGL 193 (1376)
Q Consensus 126 el~~~ke~l~~-------~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~~-----~~~~L~~~ke~~e~~ 193 (1376)
+|.++..-... -+..++-|+.....+.. |++.|+ ..+..|..+|+-|.. -++-...++..++.+
T Consensus 120 ~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~-i~~~E~---~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL 195 (508)
T PF00901_consen 120 DLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGK-IVKEEN---KQLDRLARALQKESRERTQDERKMVEEYRQKIDAL 195 (508)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 77776643332 23344445544444443 444444 467889999999983 334444566777777
Q ss_pred hHHHHHHHHHHHH
Q 000646 194 SLEIEQSRSRLQE 206 (1376)
Q Consensus 194 ~~~l~~~kkk~q~ 206 (1376)
...++.++-=|++
T Consensus 196 ~~aIe~Er~~m~E 208 (508)
T PF00901_consen 196 KNAIEVEREGMQE 208 (508)
T ss_pred HHHHHHHHhhHHH
Confidence 7777777777765
No 249
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.39 E-value=3.1e+02 Score=35.58 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000646 566 DYKDKITQLELILNQSNTRSSELEEELRI 594 (1376)
Q Consensus 566 e~q~kIs~LEsqLk~LqsrireLEEele~ 594 (1376)
.....|..|+..|..-..++..|+..++.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.10 E-value=3.2e+02 Score=28.64 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=45.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000646 1126 QNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVE 1185 (1376)
Q Consensus 1126 e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae 1185 (1376)
...++.|...|.++-.+|....++...+.+++..++..++. +..+..-+..|+.+|...+
T Consensus 60 ~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 60 SSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55567777778888888888888888888888888887776 6677777777777776543
No 251
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.79 E-value=5.4e+02 Score=29.05 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=35.9
Q ss_pred HHHHhhhhHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 000646 462 LEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQL 522 (1376)
Q Consensus 462 lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Ql 522 (1376)
+.+..-.-|+-..+++|-..++.+.|..++..+-.....-..++............++.+-
T Consensus 15 ~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 15 LNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666777777777777777666666655555555555555555555544443
No 252
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.45 E-value=1.5e+02 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 340 ISALDNLLADAKENLHAKVSELEDIKLKL 368 (1376)
Q Consensus 340 ~~~le~~~~eL~~~l~~k~~El~~l~~kl 368 (1376)
+..+...+..+...+.....++..+.+.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444444445555555444
No 253
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=42.39 E-value=2.4e+02 Score=26.50 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELI 577 (1376)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsq 577 (1376)
|+..+..|+.+++.+.+.+..+......+..+-......+..+-..+.++...+..|..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666665555555555554444444444444444444444333333
No 254
>PF14282 FlxA: FlxA-like protein
Probab=41.96 E-value=1.3e+02 Score=30.35 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000646 1056 EDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIM 1115 (1376)
Q Consensus 1056 kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~ae 1115 (1376)
..|..|..+|..|..+|.....+..-+.++-+..+..+..+|..|...|..|+.+.-...
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555552111224456777777888888888888888887777665443
No 255
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=41.12 E-value=9.6e+02 Score=31.42 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000646 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELE 684 (1376)
Q Consensus 650 ELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE 684 (1376)
++.+...+.+.+.+.....++.+++.+.....++.
T Consensus 221 e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~ 255 (861)
T KOG1899|consen 221 EVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEM 255 (861)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHH
Confidence 44445555566665555555555555554444433
No 256
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.82 E-value=8.3e+02 Score=30.59 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000646 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITK 596 (1376)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~ 596 (1376)
+++.++.-++.|+.+++..-+.....-++++.++..+..-+..+. +.++..-...+..+..-.-|-+++.-.+..-.
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LE---Eq~reqElraeE~l~Ee~rrhrEil~k~eRea 295 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLE---EQRREQELRAEESLSEEERRHREILIKKEREA 295 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhh-HHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000646 597 ERSAE-DEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDK 675 (1376)
Q Consensus 597 EeLeE-~e~rak~~rqrs~eLeell~~~kskLEe~~~~leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~ 675 (1376)
.---+ .+.+...+.....++...+..++.-.+...+...-....++.++.++...+....-+...+..|.++......-
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000646 676 VCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKL 732 (1376)
Q Consensus 676 l~~Lk~ELE~~eke~relEt-~L~e~~ek~reL~eqleelek~k~~LE~EieElkeqL 732 (1376)
+.++..+++.+......... ..----+.+-.|...+..+...-+.|..+..++..++
T Consensus 376 ieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngti 433 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTI 433 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhh
No 257
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.64 E-value=8.3e+02 Score=30.57 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1376)
Q Consensus 705 reL~eqleelek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~ 763 (1376)
.+++.+++.....+....+....- ..+..-..++..+..+++.+.+....-+.+++.
T Consensus 336 e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~ 392 (446)
T KOG4438|consen 336 ENLTKQLNELKKEKESRRQDLENR--KTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEK 392 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcccchhhccHHHHHHHH
Confidence 356666666554444444443322 235555556666666666666655555555544
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=4e+02 Score=34.60 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=34.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1376)
Q Consensus 332 ~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~ 411 (1376)
-+..++.....|+..+.+++..+..++.+|..+..++ ...-.....+.....++..|..+|.+.......++..++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~----~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREV----RDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444555554444444 222233334444444444444444444444444444443
Q ss_pred Hh
Q 000646 412 DL 413 (1376)
Q Consensus 412 dL 413 (1376)
.+
T Consensus 506 ~l 507 (652)
T COG2433 506 EL 507 (652)
T ss_pred HH
Confidence 33
No 259
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.23 E-value=5.8e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1219 DRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVA 1281 (1376)
Q Consensus 1219 ~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn 1281 (1376)
+|..+-..+.+|+.++..+...+..| ..+|..+ .....++......+..-...|-.+..-+.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i-~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKI-EKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45556666667778888888999999 7777777 66666666665555555555555554443
No 260
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.09 E-value=2.6e+02 Score=34.60 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 872 LESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 872 ~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
.+-....+..++...+.....+.+++..+..+-+.+.+++...+-+|...+-|....+++.-.+..+..++|...
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~ 85 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDV 85 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666777777788999999999999999999999999999999999999888888888888877
No 261
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.07 E-value=20 Score=36.22 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHhcc
Q 000646 1353 MTFKFIIGVALVSVIIGITLG 1373 (1376)
Q Consensus 1353 ~~~k~~~~va~~s~~~~~~~~ 1373 (1376)
.+.-||-|| ||.+.|||||-
T Consensus 48 lssefIsGi-lVGa~iG~llD 67 (116)
T COG5336 48 LSSEFISGI-LVGAGIGWLLD 67 (116)
T ss_pred HHHHHHHHH-HHHHHHHHHHH
Confidence 344477776 68888998774
No 262
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.94 E-value=6.1e+02 Score=29.14 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHh
Q 000646 571 ITQLELILNQSN 582 (1376)
Q Consensus 571 Is~LEsqLk~Lq 582 (1376)
+.+.+..+..+.
T Consensus 79 v~~q~~el~~L~ 90 (251)
T PF11932_consen 79 VASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 263
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.88 E-value=1.9e+02 Score=33.91 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHH
Q 000646 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1376)
Q Consensus 835 ~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~L 914 (1376)
+.+-.+-.....+-+...+++...+.|++.+.++|+..|-...++...+-+...+++.+.-..+.|.....-+.+++..+
T Consensus 182 ~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 182 KEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 000646 915 Q 915 (1376)
Q Consensus 915 q 915 (1376)
+
T Consensus 262 ~ 262 (269)
T PF05278_consen 262 H 262 (269)
T ss_pred c
No 264
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.28 E-value=3.8e+02 Score=27.67 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1257 AALKSSLEELGAKNKEAALLQNKVAELEQKLQQA 1290 (1376)
Q Consensus 1257 ~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dS 1290 (1376)
....++...++.++..|..++++...+.+++.+.
T Consensus 71 e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 71 KVEKELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 265
>PRK04406 hypothetical protein; Provisional
Probab=38.20 E-value=1.9e+02 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1376)
Q Consensus 518 LE~Ql~elq~K~~e~erei~eLeeklskLq~EL~ 551 (1376)
+++.+..|+.++...+.-|..|...+...+..|.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~ 42 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLIT 42 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333333
No 266
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=37.84 E-value=1.2e+03 Score=31.49 Aligned_cols=62 Identities=21% Similarity=0.202 Sum_probs=42.0
Q ss_pred hhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhh
Q 000646 1012 RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLS 1073 (1376)
Q Consensus 1012 ~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs 1073 (1376)
-|+|+++|+..++.+.-++..-+..-.-+.-.++-+=+.|.||+.-.|.+.+-...|...|+
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls 560 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLS 560 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35677777777777777776665555555555666667777777777777777766666664
No 267
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.48 E-value=4e+02 Score=26.43 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=45.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1214 AHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAEL 1283 (1376)
Q Consensus 1214 ~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~l 1283 (1376)
..+.+.+-.+...+-.++.+-+.+...|... ..| ... .......+.+..+|..++..+..++.++..+
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~-~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDA-EELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777778888888888 433 444 4566667777777777777776666666554
No 268
>PRK15396 murein lipoprotein; Provisional
Probab=37.05 E-value=1.5e+02 Score=28.56 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 000646 1082 TVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQN 1127 (1376)
Q Consensus 1082 TveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~ 1127 (1376)
-+++|+.+.+.++.++..+...++.+......+.+|+.|.|...-|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999998654433
No 269
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.92 E-value=9.6e+02 Score=30.25 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD----QMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1376)
Q Consensus 517 eLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~----klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1376)
.-+..+..+..++......+.++..+|.+-+.-+...-..+..... .-.+ -..|..++..+.....+++.=++..
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~ 368 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELA 368 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455555555555555555555555555544433333322211 1111 2344445555555555554333333
Q ss_pred HHHHHHh
Q 000646 593 RITKERS 599 (1376)
Q Consensus 593 e~L~EeL 599 (1376)
..|+-.+
T Consensus 369 ~~Lrsel 375 (521)
T KOG1937|consen 369 EKLRSEL 375 (521)
T ss_pred HHHHHHH
Confidence 3333333
No 270
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=36.74 E-value=7.3e+02 Score=29.35 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=60.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000646 1100 LTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE---KFALETRIKE 1176 (1376)
Q Consensus 1100 Lr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e---~~~le~~ie~ 1176 (1376)
...++..|-.++-+++.....-...||...|.+++....+.-.-..+..+. .+|..++..--+ +..++.+|-.
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~----d~I~kLk~k~P~s~kl~~LeqELvr 176 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQ----DEIAKLKYKDPQSPKLVVLEQELVR 176 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-TTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHH----HHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333455555555555666666678889999986555555555555555555 888888754322 8889999999
Q ss_pred HHHHHHHHHHHhhh
Q 000646 1177 LEELLVNVETQFKE 1190 (1376)
Q Consensus 1177 L~~~i~~ae~~l~e 1190 (1376)
++.....+++.|..
T Consensus 177 aEae~lvaEAqL~n 190 (271)
T PF13805_consen 177 AEAENLVAEAQLSN 190 (271)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 99888888888877
No 271
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=36.71 E-value=9.4e+02 Score=30.07 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1157 IESLKAQAAE----KFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1157 I~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
|..+|...+. +..+-..+-.-.|.+....+.+.+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~ 324 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAE 324 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHH
Confidence 5555555544 445555555556666666666666
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=36.54 E-value=1e+03 Score=31.80 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=24.2
Q ss_pred HhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 000646 970 AIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQ 1001 (1376)
Q Consensus 970 ~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~ 1001 (1376)
+.+...-++.++..++.+|...|..+..|..+
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467788899999999999998887643
No 273
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.51 E-value=4.6e+02 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 000646 711 LNAAADEKRKLQDTSNGYNEKLAEAEN 737 (1376)
Q Consensus 711 leelek~k~~LE~EieElkeqLeElE~ 737 (1376)
++.+...+..|+.....+..++.+++.
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 274
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.45 E-value=3.3e+02 Score=27.58 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhhhh
Q 000646 545 QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSH 610 (1376)
Q Consensus 545 kLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~~r 610 (1376)
++..++..+...+..+..-+.+.+.+...|..+|+.....++-++.++++|...-..+..|.....
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888888888888888888888888888888888877765555444444333
No 275
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.30 E-value=8.5e+02 Score=32.92 Aligned_cols=22 Identities=9% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHhCCCHHHHHHHHHhhhhH
Q 000646 294 IQEELGLSKLQLLDLEQRFSSK 315 (1376)
Q Consensus 294 ~~e~lglsKaiL~~vekkf~~~ 315 (1376)
+-..+|+|+.||+.-+.-+...
T Consensus 488 iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 488 IAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred HHHHhCcCHHHHHHHHHHHHhh
Confidence 4455788888887776555433
No 276
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.23 E-value=1e+03 Score=30.36 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=23.3
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHH
Q 000646 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRA 489 (1376)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~ 489 (1376)
++..+...++.....++.+.+.+.+-...|..++++
T Consensus 82 ~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 82 DLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666666666677777777
No 277
>PF14992 TMCO5: TMCO5 family
Probab=36.07 E-value=8.1e+02 Score=29.11 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHH
Q 000646 976 QRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLT 1055 (1376)
Q Consensus 976 ~~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~ 1055 (1376)
+++-.|..|=-|+++.|++|.+++...+.-...++..- +.+..+.+.+..+.+++. ...+|.
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e-----------~e~~~~~~~e~~l~~le~-------e~~~LE 76 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSE-----------EEDIISEERETDLQELEL-------ETAKLE 76 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh-----------HHhhhhhchHHHHHHHHh-------hhHHHh
Q ss_pred HHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHH
Q 000646 1056 EDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSV 1135 (1376)
Q Consensus 1056 kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~ 1135 (1376)
+.-..+-+.|.+|+.+ .++... + ++-..-+....+......+.++....-..+.++..+-..|.....=..++
T Consensus 77 ~~ne~l~~~~~elq~k----~~e~~~--~-~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq 149 (280)
T PF14992_consen 77 KENEHLSKSVQELQRK----QDEQET--N-VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQ 149 (280)
T ss_pred hhhHhhhhhhhhhhhh----hccccC--C-CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1136 ISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVE 1185 (1376)
Q Consensus 1136 i~~le~qL~~k~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae 1185 (1376)
. ..|..|+..+..+.. +.++--|+.++..+.
T Consensus 150 ~------------------~~i~klkE~L~rmE~-ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 150 A------------------NEIKKLKEKLRRMEE-EKEMLLLEKELSKYQ 180 (280)
T ss_pred H------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
No 278
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.78 E-value=3.6e+02 Score=24.91 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 561 HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 561 e~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
...+...+...-.+++.++....+.+.|..++..+..++++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666677778888888888888888888777776
No 279
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=35.07 E-value=4.3e+02 Score=25.62 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhh
Q 000646 896 ENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRAL 950 (1376)
Q Consensus 896 ~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~ 950 (1376)
.-.....-...|...|..++..+.....+.+..-..+..+......+..-..+-.
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777888888888888888888887777777777655554443333
No 280
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.87 E-value=5.3e+02 Score=26.61 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHH
Q 000646 1086 LHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQS 1134 (1376)
Q Consensus 1086 Lq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~ 1134 (1376)
|+...+..-..+..++..+..+..++.......+.+ .....+++.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~----~~~~~EL~~ 49 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI----NKALEELEK 49 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 444444555556666677777777777777666666 666666543
No 281
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=34.70 E-value=1.7e+02 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000646 557 KKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1376)
Q Consensus 557 Leele~klee~q~kIs~LEsqLk~Lqsrire 587 (1376)
+..++.-+..-+..|..|+..+..+..+++.
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 282
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.46 E-value=4.1e+02 Score=25.16 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000646 554 EEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1376)
Q Consensus 554 E~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1376)
.-++.++..+.+.++.....++-....+..+...|.++...+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333343333333
No 283
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.24 E-value=4.6e+02 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1257 AALKSSLEELGAKNKEAALLQNKVAELEQKLQQ 1289 (1376)
Q Consensus 1257 ~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~d 1289 (1376)
..+..+...++.++..|..++.++..+..++.+
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 284
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=34.09 E-value=6.8e+02 Score=27.65 Aligned_cols=53 Identities=32% Similarity=0.406 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000646 490 SNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALK 551 (1376)
Q Consensus 490 ~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~ 551 (1376)
..+.++++|+++ ..|..++..+.+++..|+ +.....+|..|.-+|..|+.++.
T Consensus 73 ~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~le---------L~s~~~ei~~L~~kI~~L~~~in 129 (181)
T PF04645_consen 73 SNAEARNAKSELEMERSNLELSFIDSFNQYKNLE---------LKSIKKEIEILRLKISSLQKEIN 129 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 777888899888 688888999998887754 23333444444455555554444
No 285
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.98 E-value=1.7e+02 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY 567 (1376)
Q Consensus 519 E~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~ 567 (1376)
+..+..|+.++..++..|..+...+...+..|..+...+..+..++..+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555555555555555554444443
No 286
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.63 E-value=4.8e+02 Score=25.79 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000646 341 SALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1376)
Q Consensus 341 ~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s 415 (1376)
..+.....++...+..+..++..+..++--=...++..-.++|........+..++..++....+-.+.+..|..
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344445555555566666666555555544455566666677777777777777777777777777666666664
No 287
>PRK04406 hypothetical protein; Provisional
Probab=32.68 E-value=2.8e+02 Score=26.42 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1376)
Q Consensus 539 LeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsri 585 (1376)
+..++..|...+.-.+.-+..++.-+..-+..|..|..++..+..++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333
No 288
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.60 E-value=1.2e+03 Score=31.00 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000646 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAA 1165 (1376)
Q Consensus 1089 ~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~i~~~~~~eI~~lk~~~~ 1165 (1376)
.++.+...+..++..+..+..+......+.......+..++.++.....++...+ ......-.+-++|.++|..|-
T Consensus 242 ~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 242 KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCce
Confidence 4567777777777788888888888888888887777777777777666666666 222333334466666665553
No 289
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.47 E-value=7.7e+02 Score=30.72 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 502 RELEPRFIAAEQRSVELEQQLNLV 525 (1376)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~Ql~el 525 (1376)
.-+...+.+..+++..||.|+|++
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555666667777777776664
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.36 E-value=1.4e+03 Score=30.89 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=45.7
Q ss_pred HHHHhCCCHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 294 IQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVN 373 (1376)
Q Consensus 294 ~~e~lglsKaiL~~vekkf~~~k~l~k~~~~el~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~ 373 (1376)
+-..+|+|+.|++.-+..+.....-..++=.+|...++.+...+.....+...+..+...+.....++..-..++- ..
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~--~~ 570 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL--EE 570 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4455899999988887666333322222333333333333333333333333333333333333333332222221 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 374 ARESVEAVLKTQEAQVSNVNEELDK 398 (1376)
Q Consensus 374 ~~~~~~ekL~e~eae~~eL~eELe~ 398 (1376)
....+..-+.+...+...+..++..
T Consensus 571 ~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 571 AEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344455555555555555543
No 291
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.31 E-value=2.6e+02 Score=33.15 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1219 DRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKL 1294 (1376)
Q Consensus 1219 ~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~k 1294 (1376)
++..|.+....+...++.+...+..+ ..-..+. .++-.+|-.+...+-.+...+..+..+|+.+.+.|-.-.++-
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq-~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQ-SELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 33555555555556666666666666 3333344 677788888888888999999999999999998877655554
No 292
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=32.09 E-value=4e+02 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000646 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLS 544 (1376)
Q Consensus 511 ~Ekk~keLE~Ql~elq~K~~e~erei~eLeekls 544 (1376)
+.++.+..+...+.++..+....++-+.|..++.
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~ 52 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVN 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444443333333333333
No 293
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.12 E-value=5.3e+02 Score=25.53 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000646 752 RLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1376)
Q Consensus 752 k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~~~~e~~ 799 (1376)
-.+.+...+..+| .....-+.+-.+-.+.+.+..+++..+..+..+.
T Consensus 10 n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 10 NPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555666666 3444556666677777778888888877777776
No 294
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.02 E-value=4.1e+02 Score=29.53 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=57.0
Q ss_pred hhhhhHHHHHHHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHH
Q 000646 1012 RKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKK 1091 (1376)
Q Consensus 1012 ~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~ 1091 (1376)
+...++.....++.+...+..++..+..... -|+.-..-..+-.++..+..++..|..+|..+...+. + .+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp---~----~i~ 138 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKYSENDP---E----KIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---H----HHH
Confidence 3344555555677777777777777555544 3444455566667777777777777777753322222 3 344
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 000646 1092 AIEDLTQKLTSEVQGLQTQISAIM 1115 (1376)
Q Consensus 1092 ~~~e~irkLr~~i~~L~~qke~ae 1115 (1376)
.+...+..++..++.++.-++...
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 555566666666666666555544
No 295
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=30.85 E-value=7.8e+02 Score=27.34 Aligned_cols=108 Identities=10% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 336 AKEEISALDNLLADAKENLHAKVSELEDIKLKLQEE----------------VNARESVEAVLKTQEAQVSNVNEELDKV 399 (1376)
Q Consensus 336 lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee----------------~~~~~~~~ekL~e~eae~~eL~eELe~l 399 (1376)
.++.--+....+..|...+..|...|.++..++... ......+..++.+-..+-..|..--.-+
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL 86 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444444677778888888888888887777211 1223334444444444444444444445
Q ss_pred HHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhHhhhhhhhh
Q 000646 400 SKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1376)
Q Consensus 400 ~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1376)
+.....+......|...+..+......+.++|...+..+...+.
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555554444
No 296
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.49 E-value=1.3e+02 Score=36.88 Aligned_cols=52 Identities=17% Similarity=0.449 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000646 384 TQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1376)
Q Consensus 384 e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~ 435 (1376)
.+..++.++.+.+..+......+...+.++...+..+.+.+.+|++..+...
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3455666666666666666666666666666666666666777777665543
No 297
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=6.5e+02 Score=26.27 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhh
Q 000646 382 LKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKEL 423 (1376)
Q Consensus 382 L~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~ 423 (1376)
+...-++|+.+++.+..+-..+..++.++.+....+.++...
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556888888888888888888888888887666666443
No 298
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=5.8e+02 Score=26.64 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 000646 1092 AIEDLTQKLTSEVQGLQTQISAIMEENNSL 1121 (1376)
Q Consensus 1092 ~~~e~irkLr~~i~~L~~qke~aeeE~~~L 1121 (1376)
.+++....+..+++.|.+|-+..++.+..|
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444444
No 299
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.06 E-value=1.1e+03 Score=29.31 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=8.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 000646 573 QLELILNQSNTRSSELEEELR 593 (1376)
Q Consensus 573 ~LEsqLk~LqsrireLEEele 593 (1376)
-+...+..-.-|...|++.++
T Consensus 248 ~~~~~LqEEr~R~erLEeqlN 268 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLN 268 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333444444444444444
No 300
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.96 E-value=1.4e+03 Score=29.89 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000646 1155 SEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQREL 1234 (1376)
Q Consensus 1155 ~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el 1234 (1376)
..|......+..+...+..+..+...+..|-..+.+ +..........+.- |-+.|. ++..++
T Consensus 245 ~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~e----a~~el~~~~~~le~----------Dp~~L~----~ve~Rl 306 (557)
T COG0497 245 SLLGRALEALEDLSEYDGKLSELAELLEEALYELEE----ASEELRAYLDELEF----------DPNRLE----EVEERL 306 (557)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCC----------CHHHHH----HHHHHH
Confidence 444444555555666677777777777777777766 33322222211111 112333 444888
Q ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1235 QIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQA 1290 (1376)
Q Consensus 1235 ~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dS 1290 (1376)
..++.-...|...+..+ -+....++.=...|.+.......|..+++.+..++..+
T Consensus 307 ~~L~~l~RKY~~~~~~l-~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~ 361 (557)
T COG0497 307 FALKSLARKYGVTIEDL-LEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEA 361 (557)
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999998778888 77777777666667777777777777777777765543
No 301
>PLN02939 transferase, transferring glycosyl groups
Probab=29.73 E-value=1.7e+03 Score=30.99 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000646 725 SNGYNEKLAEAENLLE-----LLRND-LNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA 791 (1376)
Q Consensus 725 ieElkeqLeElE~~Le-----~LR~E-l~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e 791 (1376)
..+++.++..++..|. .++.+ ++++|.++..++..+++. +.++..-..-.+..+...+..|...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 326 NQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS---DHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred chHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443 33333 356788888888889988 8888888888888888888887664
No 302
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.52 E-value=7.6e+02 Score=26.80 Aligned_cols=13 Identities=46% Similarity=0.762 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000646 650 ELEEQISKLEKKC 662 (1376)
Q Consensus 650 ELEeqis~LEKK~ 662 (1376)
++...+..++.++
T Consensus 156 ~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 156 ELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 303
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.50 E-value=2.9e+02 Score=31.47 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=25.5
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000646 114 KNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQ 154 (1376)
Q Consensus 114 ~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~ 154 (1376)
...+++|..+.+++.++++.+++..++++-.+....-|..|
T Consensus 147 ~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 147 SKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred cchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666666666666666666555555554
No 304
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.49 E-value=6.7e+02 Score=29.18 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1376)
Q Consensus 534 rei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEel 592 (1376)
.-+.-+..+..+.+..+.+++.++......+..++..+..|..+=-.|-.+++.|..=-
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34555667777788888888888888888888888888888888777778888876644
No 305
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.01 E-value=1.3e+03 Score=30.89 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 000646 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQ 1001 (1376)
Q Consensus 968 ~e~~~~~~~~e~~~keL~~kl~~~e~~~~~~~~~ 1001 (1376)
..+.+...-++.+...++.+|...|.++..|..+
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444467778888899999999888887754
No 306
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=28.96 E-value=38 Score=36.87 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=17.5
Q ss_pred cchHHHHHHHHHHHHHHHHhcc
Q 000646 1352 VMTFKFIIGVALVSVIIGITLG 1373 (1376)
Q Consensus 1352 ~~~~k~~~~va~~s~~~~~~~~ 1373 (1376)
.+++=+|+||++|-|+||+|++
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv~~~C 100 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIVCFCC 100 (179)
T ss_pred eeeeehhhHHHHHHHhHhhhee
Confidence 4777788889988888888874
No 307
>PRK10698 phage shock protein PspA; Provisional
Probab=28.92 E-value=9.1e+02 Score=27.52 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1140 EAQLNEKKATEETFKSEIESLKAQAAE----KFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1140 e~qL~~k~~i~~~~~~eI~~lk~~~~e----~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
..-|.++.... ..+..|+..+.. +..+...+..|+.+|..++.+.+.
T Consensus 88 r~AL~~K~~~~----~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 88 RAALIEKQKLT----DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566 777777777766 778888888888888888888888
No 308
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.62 E-value=7.8e+02 Score=26.63 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000646 714 AADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATS 793 (1376)
Q Consensus 714 lek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~eslE~~l~~~~~~eee~~~k~k~~~~~l~~~~~~Le~e~~ 793 (1376)
+...+.+.+.+-..+....++++...+=.|.++.....+++..-++|..+|-.=..-+--.+...++..+...+-.....
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~ 133 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVT 133 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666777777788999999999999888888777432222222334444444444444444444
Q ss_pred hhhhhhhhHHH
Q 000646 794 RNSELESLHES 804 (1376)
Q Consensus 794 ~~~e~~~~~e~ 804 (1376)
+-.+|++=.++
T Consensus 134 ~L~eLv~eSE~ 144 (159)
T PF04949_consen 134 RLMELVSESER 144 (159)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 309
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=28.59 E-value=3.6e+02 Score=28.45 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Q 000646 837 LEGQVKMYEEQLAEAA----------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQ 906 (1376)
Q Consensus 837 lq~qik~~q~~~~ea~----------~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~ 906 (1376)
|+-||..++..+.-++ +....|-. +.+-..|.++|+.++-+++++.+.+.++..=+-.--...++.+.
T Consensus 20 Lekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~--~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ 97 (129)
T PF15372_consen 20 LEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSV--ESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQ 97 (129)
T ss_pred HHHHHHHHHHHHHHHhCCCccccHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6678888888888877 44555544 55566788999999999999999999887766666677888888
Q ss_pred hHHHHHHHH
Q 000646 907 LKSKVAELQ 915 (1376)
Q Consensus 907 Le~~i~~Lq 915 (1376)
|=++|+++.
T Consensus 98 ylaEi~~~s 106 (129)
T PF15372_consen 98 YLAEISQTS 106 (129)
T ss_pred HHHHHHhhh
Confidence 888887765
No 310
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=28.26 E-value=8.7e+02 Score=27.05 Aligned_cols=40 Identities=30% Similarity=0.382 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 000646 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1376)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeek 542 (1376)
.+...+.+++.+|.-||.|++-...=+...+.+......+
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~ 100 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ 100 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444455556666666666665555555555444444433
No 311
>PRK00295 hypothetical protein; Provisional
Probab=28.13 E-value=3.1e+02 Score=25.63 Aligned_cols=29 Identities=7% Similarity=0.224 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 522 LNLVELKSSDSEREVREFSEKLSQLSTAL 550 (1376)
Q Consensus 522 l~elq~K~~e~erei~eLeeklskLq~EL 550 (1376)
+..|+.++...+.-|..|...+.+.+..|
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333333333333
No 312
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=28.02 E-value=42 Score=41.91 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=28.0
Q ss_pred hccCCCCCcccccCCCCCcchHHHHHHHHHHHHHHHH-hcccC
Q 000646 1334 AQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGI-TLGKR 1375 (1376)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~k~~~~va~~s~~~~~-~~~~~ 1375 (1376)
+++++++|.+.....-.-+|+.=..++|+++.+|||. |+|-|
T Consensus 137 ~~~t~~~~~~~~~~~~~~~~al~~~~~v~~l~~lvi~~~~~~r 179 (534)
T KOG3653|consen 137 PEGTPSSPDLATNDGEVLIYALIPLLLVSLLAALVILAFLGYR 179 (534)
T ss_pred CCCCCCCCCcccccCceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655667777777778877776655 77744
No 313
>PRK01844 hypothetical protein; Provisional
Probab=27.96 E-value=46 Score=31.44 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=6.8
Q ss_pred HHHHHHHHhcccCC
Q 000646 1363 LVSVIIGITLGKRY 1376 (1376)
Q Consensus 1363 ~~s~~~~~~~~~~~ 1376 (1376)
++.+++|+|++++|
T Consensus 15 i~G~~~Gff~ark~ 28 (72)
T PRK01844 15 VAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555554
No 314
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.88 E-value=1.9e+02 Score=26.22 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHH
Q 000646 98 KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEE 136 (1376)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~ 136 (1376)
++.+||.++.++...+-....++..+.+.+..+++...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999888888888777777777766643
No 315
>PRK10132 hypothetical protein; Provisional
Probab=27.73 E-value=49 Score=33.57 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcccC
Q 000646 1360 GVALVSVIIGITLGKR 1375 (1376)
Q Consensus 1360 ~va~~s~~~~~~~~~~ 1375 (1376)
..|.|.+|||++||+|
T Consensus 92 iaagvG~llG~Ll~RR 107 (108)
T PRK10132 92 TAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3556788999999987
No 316
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.13 E-value=4.7e+02 Score=26.41 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000646 539 FSEKLSQLSTALKEVEEEKKQL--HDQMNDYKDKITQLELILNQSNTRSSELEEELRI 594 (1376)
Q Consensus 539 LeeklskLq~EL~elE~ELeel--e~klee~q~kIs~LEsqLk~LqsrireLEEele~ 594 (1376)
+...+......+..++..+..+ ...+..+...+..+.-.+..+..+++.+.+..+.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444 4444444444444444444444444444444443
No 317
>PRK02119 hypothetical protein; Provisional
Probab=27.10 E-value=3.5e+02 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 520 QQLNLVELKSSDSEREVREFSEKLSQLSTAL 550 (1376)
Q Consensus 520 ~Ql~elq~K~~e~erei~eLeeklskLq~EL 550 (1376)
..+..|+.++...+..|..|...+.+-+..|
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i 39 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVI 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333333333
No 318
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=27.09 E-value=1.4e+03 Score=28.97 Aligned_cols=252 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 000646 815 DALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA----GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKA 890 (1376)
Q Consensus 815 eal~~~~~~~~Ea~~l~k~L~~lq~qik~~q~~~~ea~----~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~ 890 (1376)
++++.+ +-.++|..+|.-+..-++.-++.+-.++ +|...++-|+--+.+.+.-++|..-+-.-++||..-.+
T Consensus 200 e~le~~----Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~ 275 (554)
T KOG4677|consen 200 ESLERF----SALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLL 275 (554)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cc--ccchhhhhHHHHHHh------HHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHhhhhhhhhHHhhHH
Q 000646 891 NN--SSSENELLVETNNQL------KSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKE 962 (1376)
Q Consensus 891 ~~--~~~~~~~L~~~k~~L------e~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l~~~~~~~~~~~~~~e~ 962 (1376)
-. +.+-+..|+.-+.+- .-+...++.+|+++..+++-+.+-+.+++.++..|.-++
T Consensus 276 ~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~---------------- 339 (554)
T KOG4677|consen 276 DLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQI---------------- 339 (554)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH----------------
Q ss_pred HHHHHHHHhhhhhh-hhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhHhhHHHHhhhhh---
Q 000646 963 AEIQLHEAIQRFTQ-RDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSG--- 1038 (1376)
Q Consensus 963 ~~~q~~e~~~~~~~-~e~~~keL~~kl~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~le~lea~v~eLee~~~--- 1038 (1376)
+ +|++.++|..-+ +.-.. ..+- ..+...+....|.....
T Consensus 340 -------------~d~EAq~r~l~s~~----~~q~~------------~~h~--------~ka~~~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 340 -------------IDIEAQDRHLESAG----QTQIF------------RKHP--------RKASILNMPLVLTLFYECFY 382 (554)
T ss_pred -------------HHHHHHHHhHHHHh----HHHHH------------Hhhh--------HhhhhhhchHHHHHHHHHHH
Q ss_pred -hhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHh-hhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000646 1039 -HFERESGGLVETNLKLTEDLALYETKLSDLQAKL-SATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIME 1116 (1376)
Q Consensus 1039 -~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qL-s~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~qke~aee 1116 (1376)
+.+-+-...--.+.++..-|.+-+..|.-+..+| . .=....++++.+-.-.|.--+.+-+.+++.+.+
T Consensus 383 ~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~----------r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~ 452 (554)
T KOG4677|consen 383 HETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKL----------RAWNDSVDALFTTKNQLTYTLKQKQIGLERVVE 452 (554)
T ss_pred HHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHH----------HhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHhHHH
Q 000646 1117 ENNSLNETYQNAKNELQ 1133 (1376)
Q Consensus 1117 E~~~L~~~~e~~~kEl~ 1133 (1376)
.++.||+..+.++.-.+
T Consensus 453 ~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 453 ILHKLNAPLERLQEYVN 469 (554)
T ss_pred HHhhhhhhHHHHHHHhc
No 319
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.06 E-value=4.7e+02 Score=33.14 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhhccccchhhhhHHHHHHhHH
Q 000646 831 SEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEE-LQRQVVEANNKANNSSSENELLVETNNQLKS 909 (1376)
Q Consensus 831 ~k~L~~lq~qik~~q~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~-~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~ 909 (1376)
+.-||+|=+++|.+..++..+....+.|+.|.++++.........+.. +..+..++.. +-..|..+..++.+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~-------~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTK-------EIEQLKSERQQLQG 130 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999887765544433332 2233333332 33344455555666
Q ss_pred HHHHHHHHHH
Q 000646 910 KVAELQELLD 919 (1376)
Q Consensus 910 ~i~~Lqe~l~ 919 (1376)
.|++|+..|+
T Consensus 131 ~l~~l~~~l~ 140 (472)
T TIGR03752 131 LIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 320
>PF15294 Leu_zip: Leucine zipper
Probab=26.89 E-value=1.1e+03 Score=27.94 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000646 1089 SKKAIEDLTQKLTSEVQ 1105 (1376)
Q Consensus 1089 ~q~~~~e~irkLr~~i~ 1105 (1376)
-.+..|++|..||+++.
T Consensus 261 ~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 261 ILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHhccHHHHHHHHHhc
Confidence 34577888888887764
No 321
>PRK02119 hypothetical protein; Provisional
Probab=26.80 E-value=3.7e+02 Score=25.46 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1376)
Q Consensus 539 LeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsri 585 (1376)
+..++..|...+.-.+.-+..++.-+-.-+..|..|+.++..+..++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433344444444443333333333
No 322
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.62 E-value=1.2e+03 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=8.5
Q ss_pred hccchHHHHHHHHHhHHHH
Q 000646 476 ASQRNLELEDIIRASNEAA 494 (1376)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~ 494 (1376)
+|+.-.++-+-|+.++.++
T Consensus 46 Ar~~A~~fA~~ld~~~~kl 64 (301)
T PF06120_consen 46 ARQEAIEFADSLDELKEKL 64 (301)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444445555444443
No 323
>PRK10869 recombination and repair protein; Provisional
Probab=26.57 E-value=1.5e+03 Score=29.31 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHhhhhHHHH
Q 000646 1053 KLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQT------QISAIMEENNSLNETYQ 1126 (1376)
Q Consensus 1053 rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~i~~L~~------qke~aeeE~~~L~~~~e 1126 (1376)
.+...++.+-.....+..+ +++++.........+.-++-.+..|.. +.+....+..+|
T Consensus 154 ~~~~~~~~~y~~~~~~~~~-----------l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L----- 217 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRD-----------LAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRL----- 217 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-----
Q ss_pred HHHhHHHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHH
Q 000646 1127 NAKNELQSVISQLEAQLNE-K-KATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEA 1204 (1376)
Q Consensus 1127 ~~~kEl~~~i~~le~qL~~-k-~~i~~~~~~eI~~lk~~~~e~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~ 1204 (1376)
.....+...+..+-..|.. . .++- ..|..+...+..+...+..+..+...+..+...+.+ +....+.-..
T Consensus 218 ~n~e~i~~~~~~~~~~L~~~~~~~~~----~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~----~~~~l~~~~~ 289 (553)
T PRK10869 218 ANSGQLLTTSQNALQLLADGEEVNIL----SQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQE----ASDELRHYLD 289 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHH----HHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1205 ELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELE 1284 (1376)
Q Consensus 1205 ~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~le 1284 (1376)
.+.-.- ..|...- .+|..++.-..-|...+..+ ......++.-...+......+..|..++..+.
T Consensus 290 ~~~~dp----------~~l~~ie----~Rl~~l~~L~rKyg~~~~~~-~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~ 354 (553)
T PRK10869 290 RLDLDP----------NRLAELE----QRLSKQISLARKHHVSPEEL-PQHHQQLLEEQQQLDDQEDDLETLALAVEKHH 354 (553)
T ss_pred hcCCCH----------HHHHHHH----HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 000646 1285 QKLQQAQAK 1293 (1376)
Q Consensus 1285 qkL~dSd~~ 1293 (1376)
+++...-..
T Consensus 355 ~~l~~~A~~ 363 (553)
T PRK10869 355 QQALETAQK 363 (553)
T ss_pred HHHHHHHHH
No 324
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.55 E-value=2.3e+02 Score=27.74 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 000646 1082 TVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNET 1124 (1376)
Q Consensus 1082 TveELq~~q~~~~e~irkLr~~i~~L~~qke~aeeE~~~L~~~ 1124 (1376)
.+++|+++.+.++.++..+...++.++...+.+.+++++.|..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999998643
No 325
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.22 E-value=6.6e+02 Score=24.98 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000646 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1376)
Q Consensus 508 ~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsrire 587 (1376)
+......+.-|+.-......++.+...-...+...+..+..... .+...-.+|..+...+..|+.-...+....+.
T Consensus 16 l~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~----~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 16 LEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE----ELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555544444332 33344445556666777777777777777777
Q ss_pred HHHHHH
Q 000646 588 LEEELR 593 (1376)
Q Consensus 588 LEEele 593 (1376)
|+....
T Consensus 92 LE~k~k 97 (99)
T PF10046_consen 92 LESKFK 97 (99)
T ss_pred HHHHhh
Confidence 776654
No 326
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.14 E-value=1.9e+03 Score=30.44 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 634 VNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNA 713 (1376)
Q Consensus 634 leeLEe~LE~~K~RlqELEeqis~LEKK~k~~eqel~el~~~l~~Lk~ELE~~eke~relEt~L~e~~ek~reL~eqlee 713 (1376)
+.+.....+.++..+..+...+..++.+...++....++..++.....++......+..+-..+.........+...+..
T Consensus 250 y~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 250 YNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666777777777766666667777777666666666666555555555555555555555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 000646 714 AADEKRKLQDTSNGYNEKLAEAENLLE 740 (1376)
Q Consensus 714 lek~k~~LE~EieElkeqLeElE~~Le 740 (1376)
+...-...+..+...+.-+..+++.|.
T Consensus 330 lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 330 LKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555555555555555555554
No 327
>PF15102 TMEM154: TMEM154 protein family
Probab=26.00 E-value=37 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 000646 1357 FIIGVALVSVIIGITLGKR 1375 (1376)
Q Consensus 1357 ~~~~va~~s~~~~~~~~~~ 1375 (1376)
+.|++.||+|||+||..||
T Consensus 66 VLLvlLLl~vV~lv~~~kR 84 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKR 84 (146)
T ss_pred HHHHHHHHHHHHheeEEee
Confidence 4455678899999988876
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.79 E-value=1.2e+03 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKL 368 (1376)
Q Consensus 334 ~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kl 368 (1376)
..+..+++.++..+...+-.|..+..+...+...+
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555
No 329
>PRK10404 hypothetical protein; Provisional
Probab=25.36 E-value=59 Score=32.60 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcccC
Q 000646 1360 GVALVSVIIGITLGKR 1375 (1376)
Q Consensus 1360 ~va~~s~~~~~~~~~~ 1375 (1376)
..|.|.+|||++||+|
T Consensus 86 iaagvGlllG~Ll~RR 101 (101)
T PRK10404 86 VGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3556788999999987
No 330
>PRK04325 hypothetical protein; Provisional
Probab=25.36 E-value=3.6e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000646 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1376)
Q Consensus 541 eklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsrire 587 (1376)
.++..|...+.-.+.-+..++.-+..-+..|..|+.++..+..++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 331
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=25.33 E-value=1.5e+03 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 000646 1167 KFALETRIKELEELLVNVETQFKE 1190 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e 1190 (1376)
+.-++.++...+..+..|+..|-.
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~ 267 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLK 267 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777776
No 332
>PRK00295 hypothetical protein; Provisional
Probab=25.16 E-value=4.4e+02 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000646 543 LSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1376)
Q Consensus 543 lskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsrire 587 (1376)
+..|...+.-.+.-+..++.-+..-+..|..|+.++..+..++..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333334444444444444444444444444433333
No 333
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.07 E-value=6.9e+02 Score=24.84 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=9.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 000646 718 KRKLQDTSNGYNEKLAEAENLLELL 742 (1376)
Q Consensus 718 k~~LE~EieElkeqLeElE~~Le~L 742 (1376)
+..++..+..+..++..++..+..+
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 334
>PRK00736 hypothetical protein; Provisional
Probab=25.02 E-value=3.6e+02 Score=25.18 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=10.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 000646 522 LNLVELKSSDSEREVREFSEKLSQLSTA 549 (1376)
Q Consensus 522 l~elq~K~~e~erei~eLeeklskLq~E 549 (1376)
+..|+.++...+.-|..|...+.+-+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~ 34 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKT 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333
No 335
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.75 E-value=1.3e+03 Score=27.81 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000646 772 EKLKSAEEQLEQQTRVLEQA 791 (1376)
Q Consensus 772 ~k~k~~~~~l~~~~~~Le~e 791 (1376)
..+..+..||+.+...|++.
T Consensus 226 ~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 226 DEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555443
No 336
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.66 E-value=4.8e+02 Score=23.79 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 000646 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1376)
Q Consensus 559 ele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE 601 (1376)
.+...+..+..++.+|...++.+...+....++......+|..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444555555544444443
No 337
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=24.64 E-value=1.1e+03 Score=26.89 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=34.4
Q ss_pred HhhHHhhhhhHHhHHHHHHhHHHHHhhhhhhhhhhhhHHHHHHhhhhhh
Q 000646 243 ERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEI 291 (1376)
Q Consensus 243 Ek~~~~~~~~~KtlE~ql~~l~~e~~~~~~~~~~~~k~ee~ls~~~~eL 291 (1376)
+.++...-+.|+++|.....|+.+++.--+.+.....-..+++...+++
T Consensus 11 D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l 59 (211)
T cd07588 11 DEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKEL 59 (211)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677889999999999998888888877655455555554443
No 338
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.39 E-value=3.9e+02 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHH
Q 000646 521 QLNLVELKSSDSEREVREFSEKLS 544 (1376)
Q Consensus 521 Ql~elq~K~~e~erei~eLeekls 544 (1376)
.+..|+.++...+.-|..|...+.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~ 32 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVT 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 339
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.24 E-value=5.6e+02 Score=28.02 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHHHHHhhcccchhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000646 784 QTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAK-SFSEKLKNLEGQVKMYEEQLAEAAGKYALL---- 858 (1376)
Q Consensus 784 ~~~~Le~e~~~~~e~~~~~e~~~kk~E~~L~eal~~~~~~~~Ea~-~l~k~L~~lq~qik~~q~~~~ea~~k~~~l---- 858 (1376)
.+.-|-+.+.+++.+.+.- |+-+.+||--.-|- --|--+ =|.|+..+.-|.+.=+..
T Consensus 16 AEtVLrhIReG~TQL~AFe------------Evg~~L~RTsAACGFRWNs~V------RkqY~~~i~~AKkqRk~~~~~~ 77 (161)
T TIGR02894 16 AETVLRHIREGSTQLSAFE------------EVGRALNRTAAACGFRWNAYV------RKQYEEAIELAKKQRKELKREA 77 (161)
T ss_pred HHHHHHHHhcchHHHHHHH------------HHHHHHcccHHHhcchHHHHH------HHHHHHHHHHHHHHHhccccCc
Confidence 4455666777777776322 24445555444332 001111 145666665555111111
Q ss_pred ----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccccchhhhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 000646 859 ----KEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISE 924 (1376)
Q Consensus 859 ----~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~~~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e 924 (1376)
-..+..|+..+...-.....++.+...+..++..+...|..|..++..|..++..++++......=
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134555665555554455555565555655555555566666666666666666666665555443
No 340
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.20 E-value=3.5e+02 Score=26.27 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--h
Q 000646 1168 FALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ--R 1245 (1376)
Q Consensus 1168 ~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y--~ 1245 (1376)
+.....+..+..++......+.. +...+ ..+...+ ++|..+.....=| -
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~---------------l~~~~----------~~~~~~~----~eL~~l~~~~~~y~~v 51 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQ---------------LERQL----------RELELTL----EELEKLDDDRKVYKSV 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH----------HHHHHHH----HHHHTSSTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH----------HHHHHHH----HHHHhCCCcchhHHHH
Q ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 000646 1246 GADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKGGEDT 1300 (1376)
Q Consensus 1246 ~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~dSd~~k~~~~~~ 1300 (1376)
|+.=-+ ......+..+...++.++.+|..+...++.+..++.+....-....++
T Consensus 52 G~~fv~-~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 52 GKMFVK-QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp TTEEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred hHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 341
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.17 E-value=1.4e+03 Score=28.67 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 000646 340 ISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIAR 419 (1376)
Q Consensus 340 ~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~e 419 (1376)
+...+..+.+|+..++........+.++..-.-+.-..+...+...+..+..|+.+...++..+-..+..-.-+...+..
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~ 87 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLI 87 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666677777777776666666666555566666666677777777778777777777776655555555555544
Q ss_pred hHhhhHHHHHHHhhh
Q 000646 420 MKELCSELEEKLRNS 434 (1376)
Q Consensus 420 L~e~~eeLEeeL~~~ 434 (1376)
.+...-.+-.+++.+
T Consensus 88 ~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 88 AENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 342
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.04 E-value=1.2e+03 Score=27.44 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=52.8
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 327 DLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEAL 406 (1376)
Q Consensus 327 ~~~K~~~~~lked~~~le~~~~eL~~~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~l 406 (1376)
......+..++..+..+...-..|.+.|+++..++.-...++.-=+..+..-.+....++.+++.+-...-..=.+...+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yL 251 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYL 251 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444555555555566666777777777777777777744455555555666666666665555555555555555
Q ss_pred HHHHHHhH
Q 000646 407 EAAMADLT 414 (1376)
Q Consensus 407 E~~i~dL~ 414 (1376)
+.++++..
T Consensus 252 e~qle~~~ 259 (267)
T PF10234_consen 252 EHQLEEYN 259 (267)
T ss_pred HHHHHHHH
Confidence 55555544
No 343
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=24.03 E-value=1.6e+03 Score=28.63 Aligned_cols=19 Identities=5% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 000646 1142 QLNEKKATEETFKSEIESLK 1161 (1376)
Q Consensus 1142 qL~~k~~i~~~~~~eI~~lk 1161 (1376)
.+..+.|+- +|+..|+.-|
T Consensus 368 ~Ia~QTNLL-ALNAaIEAAR 386 (553)
T PRK15048 368 GIAFQTNIL-ALNAAVEAAR 386 (553)
T ss_pred HHHHHHHHH-HHHHHHHHhc
Confidence 455555665 6667776665
No 344
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=23.84 E-value=1.9e+03 Score=29.57 Aligned_cols=25 Identities=4% Similarity=0.303 Sum_probs=14.8
Q ss_pred hhhHHHHHHH------HHHHHHHHHHHHHHh
Q 000646 1220 RNALYEQVIQ------LQRELQIAQTAIAEQ 1244 (1376)
Q Consensus 1220 ~d~l~~~v~~------~~~el~~l~~~I~~y 1244 (1376)
++.|+..+.+ +...+..+-..|...
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~ 590 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASS 590 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 4555666655 566666666666554
No 345
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=23.71 E-value=68 Score=31.29 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 000646 1355 FKFIIGVALVSVIIGITLGKR 1375 (1376)
Q Consensus 1355 ~k~~~~va~~s~~~~~~~~~~ 1375 (1376)
++-|...|.|.+|||++|++|
T Consensus 74 ~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 74 WQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
No 346
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.52 E-value=4.3e+02 Score=24.92 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000646 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1376)
Q Consensus 541 eklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsri 585 (1376)
.++..|...+.-.+.-+..++.-+..-+..|..|+.++..+..++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333333333333333333333333333333333
No 347
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.44 E-value=5.1e+02 Score=33.07 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhHhhhHHHHHHHhhhH
Q 000646 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1376)
Q Consensus 388 e~~eL~eELe~l~~~ke~lE~~i~dL~s~i~eL~e~~eeLEeeL~~~~ 435 (1376)
.+..+..-+.....+...+...+.++...+..+...+..|+.+|....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555555556666666666666566556655555443
No 348
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=23.34 E-value=1.2e+03 Score=27.22 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=44.3
Q ss_pred hhHHHHHHhccch-HHHHHHHHHhHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 000646 468 ETGAAAATASQRN-LELEDIIRASNEAAEEAKSQL-------RELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1376)
Q Consensus 468 ~he~~~~~~~qk~-~EL~~qi~~~~~~~Ek~k~~l-------~~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~e 533 (1376)
..++.++.+.-+. .=|++-|++++..-++.|.++ ..|-..++.-+....++-.|+..+.....=..
T Consensus 90 Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~ 163 (330)
T KOG2991|consen 90 QYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV 163 (330)
T ss_pred HHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 4455555554444 778999999999999999998 44455556666666666666666655544443
No 349
>PF15456 Uds1: Up-regulated During Septation
Probab=23.23 E-value=8.7e+02 Score=25.38 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhc--cccchhhh--hHHHHHHhHHHHHHHHHHHHHH
Q 000646 846 EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN--NSSSENEL--LVETNNQLKSKVAELQELLDSA 921 (1376)
Q Consensus 846 ~~~~ea~~k~~~l~~Ele~~~~~l~~~E~~~~~~e~e~~e~~~~~~--~~~~~~~~--L~~~k~~Le~~i~~Lqe~l~~~ 921 (1376)
.+|++..+.+..|..=++-++..++ +++.++.+=.-+.-+-..-. ..++.... --++...+..+|+++..+|..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555666666655565555555 55555554444333322111 11111111 2344555566666666666666
Q ss_pred hhhHHHHHHHHHhhhccHHHHH
Q 000646 922 ISEKEATGQQLASHMNTVTELT 943 (1376)
Q Consensus 922 ~~e~e~~~e~l~~~~~~~~~L~ 943 (1376)
....-..-.||-.|+..|=.|+
T Consensus 101 e~R~~~~~~rLLeH~AavL~lt 122 (124)
T PF15456_consen 101 ENRLAEVRQRLLEHTAAVLQLT 122 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666554443
No 350
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=23.16 E-value=7.5e+02 Score=24.57 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHhhhhHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 000646 1194 NVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ 1244 (1376)
Q Consensus 1194 ~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y 1244 (1376)
++-.....+-..+.+.+ ..+...+ ..++..+..+..|
T Consensus 28 ~mN~~~~~kY~~~~~~~----------~~l~~~~----~~l~~k~~~l~~~ 64 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIA----------AGLEKNL----EDLNQKYEELQPY 64 (99)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHHHHHHHHHH
Confidence 35555555555566666 6666666 6666555554443
No 351
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.98 E-value=9.3e+02 Score=27.12 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 504 LEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1376)
Q Consensus 504 l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk 579 (1376)
|+..+.-.+..+..-+...+.|+..++-...+-......-...+.+...++.+-...+.++..++..|..|+.+.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 352
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.85 E-value=5e+02 Score=29.66 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=32.6
Q ss_pred ccchhhhhHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHH
Q 000646 893 SSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1376)
Q Consensus 893 ~~~~~~~L~~~k~~Le~~i~~Lqe~l~~~~~e~e~~~e~l~~~~~~~~~L~~~l 946 (1376)
+.++|..+.+....|+.++...+.+|+.++....++-.+...-..-.++|.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344555666666666666666666666666666666666666556666666555
No 353
>PRK00736 hypothetical protein; Provisional
Probab=22.81 E-value=4.7e+02 Score=24.44 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000646 543 LSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSS 586 (1376)
Q Consensus 543 lskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lqsrir 586 (1376)
+..|...+.-.+.-+..++.-+-.-+..|..|+.++..+..++.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 354
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=22.77 E-value=1.3e+03 Score=27.14 Aligned_cols=144 Identities=15% Similarity=0.219 Sum_probs=63.6
Q ss_pred hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch---------HHHHHHHHHhHHHHHHHHHHHhhh---
Q 000646 437 NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN---------LELEDIIRASNEAAEEAKSQLREL--- 504 (1376)
Q Consensus 437 e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~---------~EL~~qi~~~~~~~Ek~k~~l~~l--- 504 (1376)
-|+++|+ |+....-.+-+....---.+..+|--. .-|-..+.+-+.+++.+-..|...
T Consensus 137 rlA~kEQ----------Emqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFT 206 (330)
T KOG2991|consen 137 RLATKEQ----------EMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFT 206 (330)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeec
Confidence 5677777 777766655555544443333333222 223333344444444443333000
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 505 ---EPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK-------LSQLSTALKEVEEEKKQLHDQMNDYKDKITQL 574 (1376)
Q Consensus 505 ---~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeek-------lskLq~EL~elE~ELeele~klee~q~kIs~L 574 (1376)
..++ -+=.+|..|-+...++-... +++.|..|... -..++.....+..-+.++...++..+..|--|
T Consensus 207 PdS~tGK-~LMAKCR~L~qENeElG~q~--s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliL 283 (330)
T KOG2991|consen 207 PDSKTGK-MLMAKCRTLQQENEELGHQA--SEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILIL 283 (330)
T ss_pred CCCcchH-HHHHHHHHHHHHHHHHHhhh--hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 0000 11235555555555544332 23344444443 33444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 000646 575 ELILNQSNTRSSELEEELR 593 (1376)
Q Consensus 575 EsqLk~LqsrireLEEele 593 (1376)
+.+++.-..+|..|...+.
T Consensus 284 Qq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 284 QQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 355
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.64 E-value=1.1e+03 Score=26.38 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 000646 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANM 608 (1376)
Q Consensus 529 ~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEEele~L~EeLeE~e~rak~ 608 (1376)
+..++.++.+....+......|..-+........-.......+..|..-++.....+.....-......++.+...-+..
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHhHHhhhhhhhhhhhh
Q 000646 609 SHQRSIELEDLFQTSHSKLEGTGKR 633 (1376)
Q Consensus 609 ~rqrs~eLeell~~~kskLEe~~~~ 633 (1376)
.+.|...|...+...+..|+.+...
T Consensus 149 Ak~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 149 AKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 356
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.55 E-value=7.6e+02 Score=24.42 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000646 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1376)
Q Consensus 532 ~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireLEE 590 (1376)
...++..++..+.++..++......+-.+......+......|...+...+.-+..|.+
T Consensus 22 k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 22 KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444555555555555455555544455555555555544444444444444
No 357
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1.8e+03 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHH
Q 000646 630 TGKRVNELELLLEAEKYRIQ----ELEEQISKLEKKCEE-AEAGSKQYSDKVCELASELEAFQAR 689 (1376)
Q Consensus 630 ~~~~leeLEe~LE~~K~Rlq----ELEeqis~LEKK~k~-~eqel~el~~~l~~Lk~ELE~~eke 689 (1376)
++..+..+...+++.+.+.. ....-++.+.|+.-. -+.....++..+.++-..++..-+.
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQ 731 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444554433332 444444444444411 1223333444444444444433333
No 358
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.34 E-value=8.2e+02 Score=24.73 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000646 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN 582 (1376)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~Lq 582 (1376)
.|...+.........+...-..+..+-..+...+..+..-+................-..........|..|...+..+.
T Consensus 15 ~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 15 ALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000646 583 TRSSELEEELRITK 596 (1376)
Q Consensus 583 srireLEEele~L~ 596 (1376)
..+..+++.+..+.
T Consensus 95 ~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 95 SEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHH
No 359
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=22.29 E-value=38 Score=26.22 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=8.0
Q ss_pred HHHHHHHHHHh
Q 000646 1361 VALVSVIIGIT 1371 (1376)
Q Consensus 1361 va~~s~~~~~~ 1371 (1376)
|.++||+||..
T Consensus 14 vGv~SV~ig~~ 24 (27)
T PF04650_consen 14 VGVASVLIGTL 24 (27)
T ss_pred cchhHHHHHHH
Confidence 45678899884
No 360
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.16 E-value=4.2e+02 Score=33.56 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHhhHhhHHHHhhhhhhhHhhhhhhHHHHhhHHHHHHHHHhhHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHH
Q 000646 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1376)
Q Consensus 1022 ~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qlkeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr 1101 (1376)
.|.++-+.+.++..++ ......|.+|..+-..+..+-.++..+...+ ....+ .+++.+++++......++
T Consensus 60 TlrTlva~~k~~r~~~-------~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a-v~~~~--~~~~~~~~ql~~~~~~~~ 129 (472)
T TIGR03752 60 TLRTLVAEVKELRKRL-------AKLISENEALKAENERLQKREQSIDQQIQQA-VQSET--QELTKEIEQLKSERQQLQ 129 (472)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHhhh--HHHHHHHHHHHHHHHHHH
Confidence 4445555555555553 3344444444444444444444444443211 11222 344444444444444444
Q ss_pred HHHHhHHHHH
Q 000646 1102 SEVQGLQTQI 1111 (1376)
Q Consensus 1102 ~~i~~L~~qk 1111 (1376)
..+.+|++++
T Consensus 130 ~~l~~l~~~l 139 (472)
T TIGR03752 130 GLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 361
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.11 E-value=8.5e+02 Score=24.81 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 000646 353 NLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418 (1376)
Q Consensus 353 ~l~~k~~El~~l~~kleee~~~~~~~~ekL~e~eae~~eL~eELe~l~~~ke~lE~~i~dL~s~i~ 418 (1376)
++.++.....-|..-+=+|+.....+.+.|...++.+..+..+++.+..+...+.+.+.-|..++.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666778889999999999999999999999999999999999999998884443
No 362
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.08 E-value=3.6e+02 Score=24.71 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--Hh-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1221 NALYEQVIQLQRELQIAQTAIA--EQ-RGADSQKDSEREAALKSSLEELGAKNKEAALL 1276 (1376)
Q Consensus 1221 d~l~~~v~~~~~el~~l~~~I~--~y-~~~~sqL~~e~e~~lk~~~~ei~~l~~ei~~l 1276 (1376)
..|...+..++.++..+..-+. +| ...|+..-..+...+..+..++..+...+..|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555666666666666 57 88888886777788888888888887777654
No 363
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=21.68 E-value=51 Score=38.18 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=25.2
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhcc
Q 000646 1346 RADASPVMTFKFIIGVALVSVIIGITLG 1373 (1376)
Q Consensus 1346 ~~~~~~~~~~k~~~~va~~s~~~~~~~~ 1373 (1376)
+..+|-|=+++-+.|+.+|++|+|+-||
T Consensus 64 ~~~~W~~P~v~~~~G~~~v~liLgl~ig 91 (279)
T PF07271_consen 64 TEQSWFIPVVGGSAGLLAVALILGLAIG 91 (279)
T ss_pred ccccceeeeccchhhHHHHHHHHHHhhc
Confidence 4567888889999999999999999998
No 364
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.59 E-value=7.3e+02 Score=23.86 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000646 521 QLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ--LHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1376)
Q Consensus 521 Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELee--le~klee~q~kIs~LEsqLk~LqsrireLEEele~L 595 (1376)
-+..+..++.++..--..+...+..+...|.....-... .-.... |..++..+...+..+..++..+......|
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444445555555555555444442111 112223 66666666666666666666666665543
No 365
>PRK00846 hypothetical protein; Provisional
Probab=21.49 E-value=5.6e+02 Score=24.77 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTAL 550 (1376)
Q Consensus 519 E~Ql~elq~K~~e~erei~eLeeklskLq~EL 550 (1376)
++.+..|+.++...+.-|..|...+...+..|
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I 43 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTG 43 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333333333
No 366
>PRK13734 conjugal transfer pilin subunit TraA; Provisional
Probab=21.47 E-value=53 Score=33.23 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000646 1354 TFKFIIGVALVSVIIGI 1370 (1376)
Q Consensus 1354 ~~k~~~~va~~s~~~~~ 1370 (1376)
++||.+|+|+|||++-|
T Consensus 97 Nl~~L~G~aiv~VF~~V 113 (120)
T PRK13734 97 NVKFLAGFAIISVFIAV 113 (120)
T ss_pred hHHHHHhhHHhhhhhcc
Confidence 68999999999999866
No 367
>PRK00846 hypothetical protein; Provisional
Probab=21.43 E-value=4.7e+02 Score=25.27 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000646 540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSEL 588 (1376)
Q Consensus 540 eeklskLq~EL~elE~ELeele~klee~q~kIs~LEsqLk~LqsrireL 588 (1376)
..++..|...+.-.+.-+..++.-+...+..|..|..++..+..+++.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444444444443
No 368
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.39 E-value=6.9e+02 Score=26.95 Aligned_cols=28 Identities=0% Similarity=0.327 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 000646 514 RSVELEQQLNLVELKSSDSEREVREFSE 541 (1376)
Q Consensus 514 k~keLE~Ql~elq~K~~e~erei~eLee 541 (1376)
++..+..++..+..++.+...+|..|..
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444433
No 369
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.28 E-value=9.8e+02 Score=28.24 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHHH
Q 000646 107 ERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE----AKRKE 182 (1376)
Q Consensus 107 ~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~~~----~~~~~ 182 (1376)
..+..++......+...+.++...+.+.+.++..+..++.........+-.-+.-|......|.+.++.+. ....+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--HHhhhhhHHHHHHHHHHHHHHHHHH
Q 000646 183 LAEVK--EAFDGLSLEIEQSRSRLQELEHKLQ 212 (1376)
Q Consensus 183 L~~~k--e~~e~~~~~l~~~kkk~q~~~~~L~ 212 (1376)
+...+ +...=+...+...-..|+..+..|+
T Consensus 266 ~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 266 LLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 370
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.05 E-value=1.5e+03 Score=27.28 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=17.9
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHH
Q 000646 976 QRDIEANNLNEKVSVLEGQIKSYEE 1000 (1376)
Q Consensus 976 ~~e~~~keL~~kl~~~e~~~~~~~~ 1000 (1376)
-++.++..++.+|.++|..+..|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777653
No 371
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=20.85 E-value=33 Score=39.55 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccc
Q 000646 1358 IIGVALVSVIIGITLGK 1374 (1376)
Q Consensus 1358 ~~~va~~s~~~~~~~~~ 1374 (1376)
|.-+||+|.+||++||-
T Consensus 218 iAL~sl~SLVIGFvlG~ 234 (273)
T PF02404_consen 218 IALPSLFSLVIGFVLGA 234 (273)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34578899999999993
No 372
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.79 E-value=1.1e+03 Score=25.69 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ 559 (1376)
Q Consensus 510 ~~Ekk~keLE~Ql~elq~K~~e~erei~eLeeklskLq~EL~elE~ELee 559 (1376)
.+...+..+...+.++...+...-.++..+.......+..|..+......
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ 73 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR 73 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34555556666677777777777777777777777777777666665543
No 373
>PRK01844 hypothetical protein; Provisional
Probab=20.56 E-value=49 Score=31.22 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHhcc
Q 000646 1353 MTFKFIIGVALVSVIIGITLG 1373 (1376)
Q Consensus 1353 ~~~k~~~~va~~s~~~~~~~~ 1373 (1376)
|+.=+++++.+|.+|+|+++|
T Consensus 1 M~~~~~I~l~I~~li~G~~~G 21 (72)
T PRK01844 1 MPIWLGILVGVVALVAGVALG 21 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 334466778889999999988
No 374
>PHA01750 hypothetical protein
Probab=20.50 E-value=3e+02 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000646 1255 REAALKSSLEELGAKNKEAALLQNKVAELEQKLQ 1288 (1376)
Q Consensus 1255 ~e~~lk~~~~ei~~l~~ei~~l~~eIn~leqkL~ 1288 (1376)
...++.++..+|..++..++.++.+|.++.++++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5577888888999999999999999999988874
No 375
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.49 E-value=1.5e+03 Score=27.16 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000646 659 EKKCEEAEAGSKQYSDKVCELASELEAF 686 (1376)
Q Consensus 659 EKK~k~~eqel~el~~~l~~Lk~ELE~~ 686 (1376)
.-+++.|..+...+...+..++..++..
T Consensus 218 DvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 218 DVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666655543
Done!