Query 000646
Match_columns 1376
No_of_seqs 312 out of 382
Neff 5.6
Searched_HMMs 13730
Date Tue Mar 26 17:52:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000646.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_417-421//hhsearch_scop/000646hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bf5a1 a.47.1.1 (A:136-316) S 1.8 2.4E+02 0.018 -3.1 15.2 30 1081-1110 119-148 (181)
2 d1y5oa1 b.55.1.9 (A:2-115) RNA 1.7 82 0.006 1.0 -2.6 53 1303-1358 9-62 (114)
3 d1v54d_ f.23.1.1 (D:) Mitochon 1.7 2.7E+02 0.019 -3.4 2.5 31 1338-1370 60-90 (144)
4 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 1.6 2.7E+02 0.02 -3.5 4.2 26 1081-1106 26-51 (67)
5 d1i4da_ a.238.1.2 (A:) Arfapti 1.6 2.7E+02 0.02 -3.5 22.9 186 1021-1251 6-198 (200)
6 d2elba1 a.238.1.1 (A:6-273) DC 1.6 2.8E+02 0.021 -3.6 27.0 235 1011-1291 14-253 (268)
7 d1urua_ a.238.1.1 (A:) Amphiph 1.6 2.9E+02 0.021 -3.7 19.1 200 1024-1265 8-214 (217)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 1.4 3.2E+02 0.023 -4.1 11.5 133 1091-1246 3-144 (144)
9 d1uuja_ a.221.1.1 (A:) Lissenc 1.4 3.2E+02 0.023 -4.1 1.7 26 1044-1069 50-75 (76)
10 d2azeb1 e.63.1.2 (B:201-301) T 1.4 3.3E+02 0.024 -4.3 5.8 38 388-425 2-39 (101)
No 1
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.79 E-value=2.4e+02 Score=-3.10 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 258999999999999999999998868999
Q 000646 1081 ETVEQLHASKKAIEDLTQKLTSEVQGLQTQ 1110 (1376)
Q Consensus 1081 rTveELq~~q~~~~e~irkLr~~i~~Lk~q 1110 (1376)
..++.||.-.....+.+..+|..++++...
T Consensus 119 ~~LdqLQ~W~e~lae~l~q~rqqlkkl~el 148 (181)
T d1bf5a1 119 ACLDQLQNWFTIVAESLQQVRQQLKKLEEL 148 (181)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 218899999999999999999999999999
No 2
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.70 E-value=82 Score=0.98 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=33.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCHHHHH
Q ss_conf 00000000223344555673012113455320037999755-445789985168899
Q 000646 1303 EVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTREIP-TARADASPVMTFKFI 1358 (1376)
Q Consensus 1303 ~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~ 1358 (1376)
.+|||+...|.|....+.+|.-- .... +---...+-|+ ||+|..||-|-+|++
T Consensus 9 KKkdG~ltis~D~~~~~~~w~~~-~g~~--~vti~l~~ItnLQqTP~tspKvmLKI~ 62 (114)
T d1y5oa1 9 EKVSGIIAINEDVSPAELTWRST-DGDK--VHTVVLSTIDKLQATPASSEKMMLRLI 62 (114)
T ss_dssp SSCEEEEEEECSSSSCEEEEEES-SSSC--EEEEESTTCSEEEECCTTCSSEEEEEE
T ss_pred EECCCEEEECCCCCCEEEEECCC-CCCC--CEEEEHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 50243699866898207886048-9986--478882131343038888820288998
No 3
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.66 E-value=2.7e+02 Score=-3.43 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999755445789985168899999999998987
Q 000646 1338 STREIPTARADASPVMTFKFIIGVALVSVIIGI 1370 (1376)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~k~~~~va~~s~~~g~ 1370 (1376)
|=++|-..+..|+| --|.|+|++++.|-||+
T Consensus 60 sF~~t~ae~~~p~g--ewK~v~g~~~~~i~~s~ 90 (144)
T d1v54d_ 60 KFKESFAEMNRSTN--EWKTVVGAAMFFIGFTA 90 (144)
T ss_dssp HCSSCHHHHTCCCS--HHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCC--CHHHHHHHHHHHHHHHH
T ss_conf 86464555638999--63678999999999999
No 4
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.65 E-value=2.7e+02 Score=-3.45 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25899999999999999999999886
Q 000646 1081 ETVEQLHASKKAIEDLTQKLTSEVQG 1106 (1376)
Q Consensus 1081 rTveELq~~q~~~~e~irkLr~~i~~ 1106 (1376)
++|.+|......|...++.|...++.
T Consensus 26 ~sV~diE~eLerCk~~irrLeqel~~ 51 (67)
T d1k1fa_ 26 RSVGDIEQELERAKASIRRLEQEVNQ 51 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10767999999999999999999999
No 5
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.63 E-value=2.7e+02 Score=-3.50 Aligned_cols=186 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99984486699996325346864311388886589999999953798999730100001125899999999999999999
Q 000646 1021 LKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL 1100 (1376)
Q Consensus 1021 ~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qikeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkL 1100 (1376)
..++.....+..++.....+....+..+..+ +.+......+......++ .+.......+..-...+...-...
T Consensus 6 ~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~----~~~~~~~~~~~~~l~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 78 (200)
T d1i4da_ 6 LELELQIELLRETKRKYESVLQLGRALTAHL----YSLLQTQHALGDAFADLS---QKSPELQEEFGYNAETQKLLCKNG 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999----999999999999998742---799746899999999999999879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q ss_conf 999886899999999998532698898895798999999999878783368789999999998998------99999999
Q 000646 1101 TSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE------KFALETRI 1174 (1376)
Q Consensus 1101 r~~i~~Lk~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~l~~~~~~eI~~lk~~~~e------~~~le~~i 1174 (1376)
..-+..+..........+... +..+.....+..... .+...++..+.. ...-...+
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~kk~~~~~----~dyd~~~~k~~~~~~~~~~~~~~~kl 140 (200)
T d1i4da_ 79 ETLLGAVNFFVSSINTLVTKT--------------MEDTLMTVKQYEAAR----LEYDAYRTDLEELSLGPRDAGTRGRL 140 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH--------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 999988999886499999998--------------889999999999875----78999999999875351332014468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCH
Q ss_conf 9989999999998666679998745237999866543222222114468999999899999999999984-0682102
Q 000646 1175 KELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQK 1251 (1376)
Q Consensus 1175 e~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~s~L 1251 (1376)
...+..+..+...|.. +....-.....+.... ....+ +.|....++...| .++...|
T Consensus 141 ~~ae~~~~~a~~~fe~----~~~~~~~~l~~l~~~r------------~~~~~----~~l~~~~~~~~~f~~~~~~~l 198 (200)
T d1i4da_ 141 ESAQATFQAHRDKYEK----LRGDVAIKLKFLEENK------------IKVMH----KQLLLFHNAVSAYFAGNQKQL 198 (200)
T ss_dssp CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999----9999999999999951------------89999----999999999999999999986
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.58 E-value=2.8e+02 Score=-3.63 Aligned_cols=235 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 22433699799998448669999632534686431138888658999999995379899973010000112589999999
Q 000646 1011 TRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASK 1090 (1376)
Q Consensus 1011 ~~k~~~~~~~~~le~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qikeL~~qLs~~~~e~~rTveELq~~q 1090 (1376)
+|+ .|..++..+..++....-+-..++..+.+. ..+......+.+....+..-..+....-..+....
T Consensus 14 FRa--------~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~----~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l 81 (268)
T d2elba1 14 TRS--------LLGVFEEDATAISNYMNQLYQAMHRIYDAQ----NELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTL 81 (268)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHH
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 899--------999999999999999999999999999999----99999999999999886663134468847799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 999999999999988689999999999-8532698898895798999999999878783368789999999998998---
Q 000646 1091 KAIEDLTQKLTSEVQGLQTQISAIMEE-NNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE--- 1166 (1376)
Q Consensus 1091 ~~~~e~irkLr~~i~~Lk~qke~aeeE-~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~l~~~~~~eI~~lk~~~~e--- 1166 (1376)
....+.++.+..-...|-.+.+...-. +..+...-.+..++..-.. +.+.............
T Consensus 82 ~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~kk~f--------------ek~~~~yd~~l~k~~~~~k 147 (268)
T d2elba1 82 QQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVF--------------QIASNDHDAAINRYSRLSK 147 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999998899999884158899999999--------------9988999999999987405
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 999999999989999999998666679998745237999866543222222114468999999899999999999984-0
Q 000646 1167 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-R 1245 (1376)
Q Consensus 1167 ~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~ 1245 (1376)
.......+.+....+..++..+.. ..-..-.....++... -...+ ..+.....+-..| .
T Consensus 148 ~k~~~~~~~Ea~~~l~~~r~~f~~----~~~d~~~~l~~l~~~k------------~~~~l----~~l~~~~~a~~~ff~ 207 (268)
T d2elba1 148 KRENDKVKYEVTEDVYTSRKKQHQ----TMMHYFCALNTLQYKK------------KIALL----EPLLGYMQAQISFFK 207 (268)
T ss_dssp C-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHH
T ss_conf 688510054689999999999999----9999999999999999------------99999----999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6821028999999999999998788999899999999999999988
Q 000646 1246 GADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQ 1291 (1376)
Q Consensus 1246 ~~~s~L~~e~e~~lk~~~~ei~~l~~ei~~l~~eIn~LeqkL~dS~ 1291 (1376)
.|...+.......+..+...+..+..........+....+++..+.
T Consensus 208 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (268)
T d2elba1 208 MGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVAS 253 (268)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999998999999999999999988899999999999987116
No 7
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=1.56 E-value=2.9e+02 Score=-3.71 Aligned_cols=200 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84486699996325346864311388886589999999953798999730100001125899999999999999999999
Q 000646 1024 KNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSE 1103 (1376)
Q Consensus 1024 e~lea~v~eLee~~~~lEsElr~~v~~i~rL~kEi~~lE~qikeL~~qLs~~~~e~~rTveELq~~q~~~~e~irkLr~~ 1103 (1376)
.+.+..+..+......++..+++.......|..-++.+-.--..+..-+.-...+.......+......+......+...
T Consensus 8 ~T~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
T d1urua_ 8 RTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHK 87 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74038899999999999999999999999999999999999999999999975667625779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q ss_conf 886899999999998532698898895798999999999878783368789999999998998------99999999998
Q 000646 1104 VQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE------KFALETRIKEL 1177 (1376)
Q Consensus 1104 i~~Lk~qke~aeeE~~~L~~~~e~~~kEl~~~i~~le~qL~~k~~l~~~~~~eI~~lk~~~~e------~~~le~~ie~L 1177 (1376)
+.. .+ ..-++++...+..+...+.++.... .+...++..+.. ...-...+...
T Consensus 88 ~~~-------------~v----~~pL~~~~~~~~~~~~~~kkr~~~~----~dyd~~~~~l~k~~~k~~~~~~~~~l~~~ 146 (217)
T d1urua_ 88 LGD-------------QV----LIPLNTYTGQFPEMKKKVEKRNRKL----IDYDGQRHSFQNLQANANKRKDDVKLTKG 146 (217)
T ss_dssp HHT-------------TT----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTTCBTTBCCTTTTC
T ss_pred HHH-------------HH----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 999-------------99----9999999998689999999999999----99999999999987421454202126779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHH
Q ss_conf 9999999998666679998745237999866543222222114468999999899999999999984-068210289999
Q 000646 1178 EELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQ-RGADSQKDSERE 1256 (1376)
Q Consensus 1178 ~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~~y-~~~~s~L~~e~e 1256 (1376)
+..+..+...|.. +..........+.... ..... ..|.....+-..| ..+...+ ..+.
T Consensus 147 e~~~~~a~~~fe~----~~~~l~~el~~~~~~~------------~~~~~----~~l~~~~~~q~~~~~~~~~~~-~~l~ 205 (217)
T d1urua_ 147 REQLEEARRTYEI----LNTELHDELPALYDSR------------ILFLV----TNLQTLFATEQVFHNETAKIY-SELE 205 (217)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------HHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 9999999999999----9999999999999978------------99999----999999999999999999999-9999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 000646 1257 AALKSSLEE 1265 (1376)
Q Consensus 1257 ~~lk~~~~e 1265 (1376)
..|.++..+
T Consensus 206 ~~~~~l~~~ 214 (217)
T d1urua_ 206 AIVDKLATE 214 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999876776
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=1.44 E-value=3.2e+02 Score=-4.06 Aligned_cols=133 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 99999999999998868999999999985------3269889889579899999999987878-3368789999999998
Q 000646 1091 KAIEDLTQKLTSEVQGLQTQISAIMEENN------SLNETYQNAKNELQSVISQLEAQLNEKK-ATEETFKSEIESLKAQ 1163 (1376)
Q Consensus 1091 ~~~~e~irkLr~~i~~Lk~qke~aeeE~~------~L~~~~e~~~kEl~~~i~~le~qL~~k~-~l~~~~~~eI~~lk~~ 1163 (1376)
+.....+.....-+..++...+.+.+.+. .|+..-......+...+..+..+|..-. .+.+.+...+..++..
T Consensus 3 ~~~e~~~d~f~~y~~~l~~~a~~~~~~l~~sel~~el~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~ 82 (144)
T d1gs9a_ 3 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQAR 82 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70899998999999999874899999998679999988999999999999999999987877999998888659999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998-9999999999899999999986666799987452379998665432222221144689999998999999999999
Q 000646 1164 AAE-KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIA 1242 (1376)
Q Consensus 1164 ~~e-~~~le~~ie~L~~~i~~ae~~l~e~~~~v~~~~~~~e~~l~~~~~~~~~~~~~~d~l~~~v~~~~~el~~l~~~I~ 1242 (1376)
+.. +..+... |.|.+......+...++-++.....-...++..+ . ..+..+...+.
T Consensus 83 l~~~lee~r~k---l~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l----------------~----~~~eel~~kL~ 139 (144)
T d1gs9a_ 83 LGADMEDVRGR---LVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRL----------------L----RDADDLQKRLA 139 (144)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHH----------------H----HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H----HHHHHHHHHHH
T ss_conf 98789999999---9988999999998999999998789999999999----------------8----89999999860
Q ss_pred HH-HC
Q ss_conf 84-06
Q 000646 1243 EQ-RG 1246 (1376)
Q Consensus 1243 ~y-~~ 1246 (1376)
-| .|
T Consensus 140 py~~~ 144 (144)
T d1gs9a_ 140 VYQAG 144 (144)
T ss_dssp HSSCC
T ss_pred CCCCC
T ss_conf 74688
No 9
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.43 E-value=3.2e+02 Score=-4.09 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31138888658999999995379899
Q 000646 1044 SGGLVETNLKLTEDLALYETKLSDLQ 1069 (1376)
Q Consensus 1044 lr~~v~~i~rL~kEi~~lE~qikeL~ 1069 (1376)
|.+.=..++||.+-|.++|+++..++
T Consensus 50 LEKKWtSViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 50 LEKKWTSVIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12589989999999999999999861
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.37 E-value=3.3e+02 Score=-4.26 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999996754998673369
Q 000646 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCS 425 (1376)
Q Consensus 388 ~i~eL~eELe~lk~~ke~lE~~i~dL~s~i~eL~e~~e 425 (1376)
+++.|..+++.+...-..+...|..+...+..+.+...
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~ 39 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTD 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 66799999999999999999999999999999652664
Done!