Query 000647
Match_columns 1374
No_of_seqs 451 out of 5093
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 18:20:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000647.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_417-421//hhsearch_pdb/000647hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1157.4 108.4 1168 72-1363 49-1291(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 985.0 98.1 1137 101-1364 44-1246(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 543.8 44.7 535 87-649 739-1290(1321)
4 3qf4_B Uncharacterized ABC tra 1.0 1 1 498.3 55.4 528 85-649 22-564 (598)
5 4a82_A Cystic fibrosis transme 1.0 1 1 496.1 58.0 530 88-649 2-550 (578)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 490.2 62.9 523 93-649 16-552 (587)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 487.0 64.3 530 85-649 10-553 (582)
8 3b5x_A Lipid A export ATP-bind 1.0 1 1 485.8 68.1 529 85-649 10-553 (582)
9 2yl4_A ATP-binding cassette SU 1.0 1 1 484.9 67.9 538 85-652 4-558 (595)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 468.3 54.1 534 88-649 693-1244(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1157.42 Aligned_cols=1168 Identities=16% Similarity=0.185 Sum_probs=715.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
Q ss_conf 4531111235546688999999972054503599999999999999999999998889999999824-------------
Q 000647 72 RSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR------------- 138 (1374)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~------------- 138 (1374)
..+.++.+.+|+.+++| +|+.-| ++..++++.+++.++.-.....++.+-|++++.+...
T Consensus 49 ~~~~~~~~~~~v~~~~L---frya~~----~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 121 (1321)
T 4f4c_A 49 TRDAKEEVVNKVSIPQL---YRYTTT----LEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLP 121 (1321)
T ss_dssp SCC---CCSSCCCHHHH---TTTCCH----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSS
T ss_pred HHHHHHCCCCCCCHHHH---HHCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 12232025687799997---315676----78999999999999999999999999999999997010001454300034
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHC
Q ss_conf -----913899999999999999999999999999999999999999999999841100443410489-99992579881
Q 000647 139 -----RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLAS 212 (1374)
Q Consensus 139 -----~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~-~~~npdqRIt~ 212 (1374)
....|...+....+..+...+...+..|++..+....-.+++.+++.++|++....+++++|+ ..++..+|+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~ 201 (1321)
T 4f4c_A 122 TGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFD 201 (1321)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_conf 43100168999999999999999999999999999999999999999999999999997889899879984899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 19999999999999879999999999999998613669999999999999999999699999999999999999999999
Q 000647 213 DVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSR 292 (1374)
Q Consensus 213 Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ 292 (1374)
|++.+.+.+...+..++..++..+. .+.++.+.+|.+++++++..++...+...+++...+...+.++..+........
T Consensus 202 D~~~i~~~~~~~l~~~~~~~~~~i~-~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 280 (1321)
T 4f4c_A 202 NLERVKEGTGDKIGMAFQYLSQFIT-GFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEE 280 (1321)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHH-HHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999-999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 99949999981884999999999999999999999999999999999999999899888886653620442578651458
Q 000647 293 LRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGR 372 (1374)
Q Consensus 293 ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~~~~~~~g~ 372 (1374)
...+.+.|+.|++|+.+.+++.+...+..+...+ .....+.............+..+++...++ +..+..+.|.
T Consensus 281 ~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---v~~g~lt~g~ 354 (1321)
T 4f4c_A 281 TISSIRTVVSLNGLRYELERYSTAVEEAKKAGVL---KGLFLGISFGAMQASNFISFALAFYIGVGW---VHDGSLNFGD 354 (1321)
T ss_dssp HHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTSSCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCHHH
T ss_conf 9983999998214299999999999999999999---999999999999999999999999999999---9959986999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999999999999999999999999999999999999999999853000133689988899987667888299964599
Q 000647 373 AKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKV 452 (1374)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 452 (1374)
+++. ..++.....++..+...+..+.+..++.+|+.++++.+++....... ........+.|+|+||+|
T Consensus 355 --~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~-----~~~~~~~~g~I~~~nvsF 423 (1321)
T 4f4c_A 355 --MLTT----FSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA-----GRKDMKIKGDITVENVHF 423 (1321)
T ss_dssp --HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC-----CCCCCCCCCCEEEEEEEE
T ss_pred --HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCCCEEEEEEEE
T ss_conf --9999----99999999999989999999999999999999997178534566655-----656778887679998554
Q ss_pred ECCC--CCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCC
Q ss_conf 8699--9702231027780998899985899966489998779986995489929988------4434627899157989
Q 000647 453 VTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYT 524 (1374)
Q Consensus 453 ~~p~--~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l 524 (1374)
.||+ +.++|+|+||++++|+.++|+||||||||||+++|.|+|+|.+|+|.++|.+ .+++++|+||||+||+
T Consensus 424 ~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L 503 (1321)
T 4f4c_A 424 TYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL 503 (1321)
T ss_dssp CCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred ECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEE
T ss_conf 07999987433331886228827899805898577888875456516448615799650112599985046665875332
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8677889751799887646779988899999976983588509998555---6899879569999999999715998999
Q 000647 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 525 ~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~ili 601 (1374)
|++|+||||.||.+. .+++++.++++.++++++++.+|.++++ +.|.+|||||||||+||||+|++|+++|
T Consensus 504 f~~TI~eNI~~g~~~------~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 504 FNCTIEENISLGKEG------ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp CSEEHHHHHHTTCTT------CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ECCCHHHHHHHHCCC------CHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 078616788641552------20999999998756546887088888607558988777778799999998725999899
Q ss_pred EECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 8668889999999999999980--5977999905922686136799814999367830689963211234-322345643
Q 000647 602 LDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSG-INMIKSSET 678 (1374)
Q Consensus 602 LDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 678 (1374)
|||||||||.++|..+.+.+.+ .|+|+|+||||+++++.+|+|++|++ |. ..+. ++++++....+ +......+.
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~-G~-ive~-Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKN-GQ-VVEV-GDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEET-TE-EEEE-ECHHHHHTTTCHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCEEEEEEC-CE-EECC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 84554468878999999999998479889997363878986898999639-96-5136-899999985327999999622
Q ss_pred CCH-HHH---------HHHH-HHHHHC---CCCCCCCCCCCCCCHHH--------HHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 101-356---------7887-765301---36866689987730124--------3104898888999886787767877
Q 000647 679 DRQ-SDA---------MAVE-QAFVTA---KKDSAFSNPKAQSYVSE--------VIAASPIADHNVPLPVFPQLKSAPR 736 (1374)
Q Consensus 679 ~~~-~~~---------~~~~-~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1374)
..+ .+. .... +..... ................. .....+...+......++......+
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1321)
T 4f4c_A 655 FTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENN 734 (1321)
T ss_dssp HHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHHTTTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 12222332334433223211122222342222222110221110132124567740257775315403899999999707
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62388986676512431121135899999---999999988889874101588998714987999999999999999998
Q 000647 737 ILPLRVADMFKVLVPTVFDKQGAQLLAVA---FLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSF 813 (1374)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1374)
.....+..++....|.+.....+...+.. .......|+..++....++.... .....+ +..++++.+++..+
T Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~i 809 (1321)
T 4f4c_A 735 AQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADF---LSQGHF--WALMFLVLAAAQGI 809 (1321)
T ss_dssp CCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTT---TTTHHH--HHHHHHHHHHHHHH
T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHHHH--HHHHHHHHHHHHHH
T ss_conf 8631099999998778999999999999999999999999999998751793455---667899--99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH----H---HHHH
Q ss_conf 99899999999999999999999999751488-62333137899999866047999999999998877----7---5686
Q 000647 814 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT----G---MVKP 885 (1374)
Q Consensus 814 ~~~~~~~~~~~l~~~~~~~l~~~ll~~~l~~~-~f~~~~~~~~~~~~~~~ri~~D~~~l~~~l~~l~~----~---~v~~ 885 (1374)
......++..+.+.++..+++.++++++++.+ +||+....+ .+++.+|++.|++.+...++..+. . ++..
T Consensus 810 ~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~--~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ 887 (1321)
T 4f4c_A 810 CSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNA--SGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGC--HHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999888734993332167888--488885025059999999999999999986537777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999999999999952134799999999999999998527610002898-7610123689999987578766029917999
Q 000647 886 SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSRE-QQLEGTFRFMHERLRAHAESVAFFGGGAREK 964 (1374)
Q Consensus 886 ~i~~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~r~~~~~l~~~~esia~~~g~~~e~ 964 (1374)
++.++++.|.++++.. ++++. +....+. ..+.......+. ...........+.+. ...++..|+.+..+.
T Consensus 888 ~~~~~~~~~~l~lv~l----~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~-gi~tIra~~~e~~~~ 958 (1321)
T 4f4c_A 888 IGLAFFYGWQMALLII----AILPI--VAFGQYL--RGRRFTGKNVKSASEFADSGKIAIEAIE-NVRTVQALAREDTFY 958 (1321)
T ss_dssp HHHHHHHCHHHHHHHH----HHHHH--HHHHHHH--HTSCCSSCSTTTSSHHHHHHHHHHHHHH-THHHHHHTTTHHHHH
T ss_pred EEEEHHHHHHHHHHHH----HHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHH
T ss_conf 0221378689999999----98889--9999999--9999999999999998889889999996-279888614148899
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999-999997855577899821034889889999986302640122103579999999999999999
Q 000647 965 AMIESRFRELLEHSLL-LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 1043 (1374)
Q Consensus 965 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~ 1043 (1374)
++|.+.++.... ..+..++.+....+ ......+.....++++......... +.+..... .....+....
T Consensus 959 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~lv~~~~~--~~~~~~~~--~~~~~~~~~~ 1028 (1321)
T 4f4c_A 959 ----ENFCEKLDIPHKEAIKEAFIQGLSYGC--ASSVLYLLNTCAYRMGLALIITDPP--TMQPMRVL--RVMYAITIST 1028 (1321)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHTTSSSSC--SSCHHHHH--HHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHH--HHHHHHHHHH
T ss_conf ----999999999999999999999999999--9999999999999875788753765--42147899--9999998778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCCCCCCEE
Q ss_conf 879999999999999987997799999998732999987668777878888889978996327847983--333323208
Q 000647 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTF 1121 (1374)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~--~~vL~~lsl 1121 (1374)
..++.+......+.+...+++|++++.+..++.++ ...++..||. .|+|+|+||+|.||+. .+||+|+||
T Consensus 1029 ~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-----~~~~~~~~~~---~g~I~f~nVsf~Y~~~~~~~VL~~isl 1100 (1321)
T 4f4c_A 1029 STLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS-----LSLAGEKKKL---YGKVIFKNVRFAYPERPEIEILKGLSF 1100 (1321)
T ss_dssp SSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT-----TCCCSBCCCC---CCCEEEEEEEECCTTSCSSCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCCC---CCEEEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 89999999999999999999989998607665777-----6677878888---881899987985799998821245169
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHHHCCCCCHH
Q ss_conf 8828985999759999299999999368999998386599866543--48765179963988779865678751699826
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTiRdNi~yp~~~~ 1199 (1374)
+|+|||+||||||||||||||+++|+|||+|.+|+|.+||+||+++ +.+|.+|++|||||+||+|||||||.|+.+.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~- 1179 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP- 1179 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCC-
T ss_conf 9889899999899998199999999568638997899999986549999998545998789973272399997454999-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCC-CCCCCCCHHHHHHHCCCCCHHHHHHHHC
Q ss_conf 899999763068875445677896899999985797023431103786545-6435899144421034231235776200
Q 000647 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSI 1278 (1374)
Q Consensus 1200 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~-~~~~~LS~GQrQrlai~~~~~~~~~~~~ 1278 (1374)
.+..|++++++++.++++++++.+|+||||.+ +.|.+|||||||||||
T Consensus 1180 -------------------~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai------------ 1228 (1321)
T 4f4c_A 1180 -------------------SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI------------ 1228 (1321)
T ss_dssp -------------------TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH------------
T ss_pred -------------------CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH------------
T ss_conf -------------------9999999999999829849997176789998238891569999999999------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCC
Q ss_conf 1212023567630456788766221112336868885056889998999999999981--69639991699884421012
Q 000647 1279 NKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSL 1356 (1374)
Q Consensus 1279 ~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHR~~~i~~~~~ 1356 (1374)
|||++|+||||+|||||||||.++|+.+++.++. .|+|+|+||||++++..+|+
T Consensus 1229 ------------------------ARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~ 1284 (1321)
T 4f4c_A 1229 ------------------------ARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADC 1284 (1321)
T ss_dssp ------------------------HHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSE
T ss_pred ------------------------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCE
T ss_conf ------------------------99997179989996811157899999999999997399989996068999996999
Q ss_pred EEEEECC
Q ss_conf 1898718
Q 000647 1357 ELRLIDG 1363 (1374)
Q Consensus 1357 ~l~l~~g 1363 (1374)
++.|.+|
T Consensus 1285 I~Vld~G 1291 (1321)
T 4f4c_A 1285 IAVVSNG 1291 (1321)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999898
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=984.98 Aligned_cols=1137 Identities=16% Similarity=0.187 Sum_probs=686.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 035999999999999999999999988899999998249-----------------138999999999999999999999
Q 000647 101 KMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-----------------VPLFFQLISENILLCFLLSTMHST 163 (1374)
Q Consensus 101 ~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~-----------------~~~f~~~l~~~~~~~~~~~~~~~~ 163 (1374)
.++..++++.+++.++.......++.+.+.+++.+.... ...+...+..+.++.+...++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1284)
T 3g5u_A 44 WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999999999998613444332222221111100244688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998411004434104899-9992579881199999999999998799999999999999
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~~-~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l 242 (1374)
..|+...+....-.+...+++.++|++....++.++|.. .++..+|+++|++.+.+.+...+..++..++..+. ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~-~~~~ 202 (1284)
T 3g5u_A 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFG-GFII 202 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999999999999999999986998997568877899999988999999999999999999999999-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 98613669999999999999999999699999999999999999999999999499999818849999999999999999
Q 000647 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~ 322 (1374)
+.+.+|.+++++++..++...+...+++...+...+.++..+...........+.+.|+.|+.|+.+.+++.+..++..+
T Consensus 203 ~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~ 282 (1284)
T 3g5u_A 203 GFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKR 282 (1284)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99998999999999999999999999999999999999999999999999997879999846539999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999899888886653--6204425786514589999999999999999999999999999
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 400 (1374)
...+.. ...+................+++... +..|.+ +.|... .. +..+...+.+++.+...+
T Consensus 283 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~-----~~g~~~--~~----~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 283 LGIKKA---ITANISMGAAFLLIYASYALAFWYGTSLVISKEY-----SIGQVL--TV----FFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHTTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----CSSCHH--HH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHH--HH----HHHHHHHHHHHHHHHHHH
T ss_conf 999999---9999999999999999999999999999992998-----899999--99----999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CEEEEEEEEEEECCCEEEEEC
Q ss_conf 999999999999999985300013368998889998766788829996459986999--702231027780998899985
Q 000647 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1374)
Q Consensus 401 ~~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~--~~~l~~lsl~i~~G~~~~I~G 478 (1374)
..+.+..++++|+.++++..++....... ........+.|+++||++.||++ .++|+|+||++++|+.++|+|
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-----~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG 423 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKS-----GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSS-----CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEEC
T ss_conf 99999999999999997289867766656-----7777777771899998997699998710125458975998899989
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 899966489998779986995489929988------44346278991579898677889751799887646779988899
Q 000647 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1374)
Q Consensus 479 psGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~ 552 (1374)
|||||||||+++|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++|||.++... .+++++.
T Consensus 424 ~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~------~~~~~~~ 497 (1284)
T 3g5u_A 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED------VTMDEIE 497 (1284)
T ss_dssp CSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS------CCHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCC------CCHHHHH
T ss_conf 9999799999998078899973899999987757999998654898688753776699997457989------9999999
Q ss_pred HHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCE
Q ss_conf 999976983588509998555---68998795699999999997159989998668889999999999999980--5977
Q 000647 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1374)
Q Consensus 553 ~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~T 627 (1374)
++++.++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||.++++.+.+.+++ .|+|
T Consensus 498 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 577 (1284)
T 3g5u_A 498 KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577 (1284)
T ss_dssp HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 99998296999974656334501478786599999999999999529998999798777799999999999999739998
Q ss_pred EEEECCCHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCC--CCC--CC--CCCCCHHH---HHHHHHHHHHCCCCC
Q ss_conf 9999059226861367998149993678306899632112343--223--45--64310135---678877653013686
Q 000647 628 CITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGI--NMI--KS--SETDRQSD---AMAVEQAFVTAKKDS 698 (1374)
Q Consensus 628 iI~itHr~~~~~~~d~il~l~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~--~~~~~~~~---~~~~~~~~~~~~~~~ 698 (1374)
+|+||||++.+..+|++++|++ |. ..+. ++.++.....+. ... +. .+...... ...............
T Consensus 578 ~i~itH~l~~i~~~d~i~vl~~-G~-i~~~-g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1284)
T 3g5u_A 578 TIVIAHRLSTVRNADVIAGFDG-GV-IVEQ-GNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDS 654 (1284)
T ss_dssp EEEECSCHHHHTTCSEEEECSS-SC-CCCE-ECHHHHHHTTSHHHHHHHHTC----------------------------
T ss_pred EEEEECCHHHHHCCCEEEEEEC-CE-EEEE-CCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999407789974998999989-99-9997-8899998678779999997430022111333333222223443333333
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHH---HHH
Q ss_conf 6689987730124310489888899988678776787762388986676512431121135899999----999---999
Q 000647 699 AFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA----FLV---VSR 771 (1374)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 771 (1374)
.....+ ................... .........+....+++..+....++.+. .+.+++.. .+. +..
T Consensus 655 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 729 (1284)
T 3g5u_A 655 GSSLIR-RRSTRKSICGPHDQDRKLS-TKEALDEDVPPASFWRILKLNSTEWPYFV---VGIFCAIINGGLQPAFSVIFS 729 (1284)
T ss_dssp -------------------------------CCCCCSCCCTTHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCC-HHHHHHCCCCCHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 320003-4543334456422332110-24555313662589999998451579999---999999999999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEE
Q ss_conf 98888987410158899871498799999999999999999899899999999999999999999999751488-62333
Q 000647 772 TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKV 850 (1374)
Q Consensus 772 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ll~~~l~~~-~f~~~ 850 (1374)
.++..+......... ......+..++++.+++..+......++..+.+.++..+++..+++++++.+ .||+.
T Consensus 730 ~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~ 802 (1284)
T 3g5u_A 730 KVVGVFTNGGPPETQ-------RQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802 (1284)
T ss_dssp HHHHHHHSSCSTTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHS
T ss_pred HHHHHHHCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 999998556850336-------7799999999999999999999999999999999999999999999998399888757
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1378999998660479999999999988777568-------699999999999995213479999999999999999852
Q 000647 851 FNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK-------PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 923 (1374)
Q Consensus 851 ~~~~~~~~~~~~ri~~D~~~l~~~l~~l~~~~v~-------~~i~~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1374)
... ...++.+|++.|++.+...+...+..++. .++..+++.|+++++.. +.++..++......+..
T Consensus 803 ~~~--~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l----~~~p~~~~~~~~~~~~~- 875 (1284)
T 3g5u_A 803 PKN--TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLL----AIVPIIAIAGVVEMKML- 875 (1284)
T ss_dssp CSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHH----HHHHHHHHHHHHHHHHH-
T ss_pred CCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-
T ss_conf 899--88999999999999999999999999999999999999999999699999999----99999999999999999-
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76100028-98761012368999998757876602991799999999999999999-99999997855577899821034
Q 000647 924 PEFGDLTS-REQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS-LLLLKKKWLFGILDDFVTKQLPH 1001 (1374)
Q Consensus 924 ~~~~~~~~-~~~~l~~~~r~~~~~l~~~~esia~~~g~~~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1374)
..... .....+...+...+.+. ..+++..|+.+.... .+|.+..+.. ....+..++.+....+. +...
T Consensus 876 ---~~~~~~~~~~~~~~~~~~~e~l~-gi~ti~a~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 945 (1284)
T 3g5u_A 876 ---SGQALKDKKELEGSGKIATEAIE-NFRTVVSLTREQKFE----TMYAQSLQIPYRNAMKKAHVFGITFSFT--QAMM 945 (1284)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHT-TCTTTTTCSSHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_conf ---99999999999999999999998-899999846599999----9999999999999999999999999999--9999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88988999998630264012210357999999999999999987999999999999998799779999999873299998
Q 000647 1002 NVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDD 1081 (1374)
Q Consensus 1002 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~ 1081 (1374)
.+.+.+.++++........ + +.+.+.... ..+......++.+......+.+...+.+|++++.+..++..+.
T Consensus 946 ~~~~~~~~~~g~~lv~~~~-~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-- 1017 (1284)
T 3g5u_A 946 YFSYAAAFRFGAYLVTQQL-M-TFENVLLVF----SAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSY-- 1017 (1284)
T ss_dssp HHHHHHHHHHHHCCCSSSC-S-CSTTHHHHH----HHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSC--
T ss_pred HHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 9999999999999999098-0-699999999----9999999999999999999999999999999998388766665--
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 7668777878888889978996327847983--33332320888289859997599992999999993689999983865
Q 000647 1082 EISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159 (1374)
Q Consensus 1082 ~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~--~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~i 1159 (1374)
.. .....++ ..|.|+|+||+|.||+. .++|+|+||+|+|||++|||||||||||||+++|.|+|+|.+|+|.+
T Consensus 1018 -~~-~~~~~~~---~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1018 -ST-QGLKPNM---LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp -CS-SCCCTTT---TSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred -CC-CCCCCCC---CCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf -55-6654567---778579999899779999870020305997699889998899997899999994686789977989
Q ss_pred CCCCCCCC--CCCCCCEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99866543--4876517996398877986567875169982689999976306887544567789689999998579702
Q 000647 1160 PSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237 (1374)
Q Consensus 1160 dg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~ 1237 (1374)
||.|++.. +.+|.++++|||||++|++||||||.++... ....+++++++++.+++.+
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~--------------------~~~~~~~i~~~~~~~~~~~ 1152 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS--------------------RVVSYEEIVRAAKEANIHQ 1152 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS--------------------CCCCHHHHHHHHHHHTCHH
T ss_pred CCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCC--------------------CCCCHHHHHHHHHHHCCHH
T ss_conf 99980007899997026898778740666699997466877--------------------8999999999999839599
Q ss_pred HHHHHCCCCCCCC-CCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3431103786545-643589914442103423123577620012120235676304567887662211123368688850
Q 000647 1238 LLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILD 1316 (1374)
Q Consensus 1238 ~~~~~~~Gldt~~-~~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLD 1316 (1374)
.++++|+|+||.+ +.|..||||||||+|| |||++++|++|+||
T Consensus 1153 ~i~~l~~gldt~vge~G~~LSgGq~Qrv~i------------------------------------ARal~~~p~iLiLD 1196 (1284)
T 3g5u_A 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAI------------------------------------ARALVRQPHILLLD 1196 (1284)
T ss_dssp HHSSTTTGGGCBCSTTSCSSCHHHHHHHHH------------------------------------HHHHHHCCSSEEEE
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHH------------------------------------HHHHHCCCCEEEEE
T ss_conf 997270424561178889338999999999------------------------------------99997499999986
Q ss_pred CCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 56889998999999999981--6963999169988442101218987189
Q 000647 1317 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1317 EaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHR~~~i~~~~~~l~l~~g~ 1364 (1374)
||||+||.++++.+++.++. .|+|+|+||||++++..+|+++.|.+|+
T Consensus 1197 EpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1197 EATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246 (1284)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBE
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCE
T ss_conf 87555799999999999998679998999955879998099899998998
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=543.83 Aligned_cols=535 Identities=17% Similarity=0.198 Sum_probs=349.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999720545035999999999999999999999988899999998249138999999999999999999999999
Q 000647 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1374)
Q Consensus 87 ~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~y 166 (1374)
.+.+++....|.|. . +++.+.+.++...+....+.+.+.+.+........ .......+.++.+...++..+..|
T Consensus 739 ~~~~~~~~~~~~~~----~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 739 NLFEILYHARPHAL----S-LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPAD-FLSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CHHHHHHHTGGGHH----H-HHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSST-TTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09999999877899----9-99999999999999999999999999875179345-566789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999841100443410489---999925798811999999999999987999999999999999
Q 000647 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 167 l~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~---~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~ 243 (1374)
+...+....-.++..++|.+.|++....+++++|. ..+...+|+++|++.+.+.+...+..++..++..+. ...++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~-~~~~~ 891 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVA-GIGLA 891 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEEEE
T ss_conf 99999999999999999999988873499333216788848888502505999999999999999998653777-70221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86136699999999999999999996999999999999999999999999994999998188499999999999999999
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~ 323 (1374)
.+.+|.+++++++..++.........+...+...+.++..+...........+.++|+.|+.|+.+.+++.+..+...+.
T Consensus 892 ~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 971 (1321)
T 4f4c_A 892 FFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKE 971 (1321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 37868999999998889999999999999999999999988898899999962798886141488999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-99999999999999899888886653620442578651458999999999999999999999999999999
Q 000647 324 MRVVLHDH-WWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1374)
..+..... ...++..... ++... .+++...++ +..+..+.+....+..+ ..+......++.+......
T Consensus 972 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~g~~l---v~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~ 1040 (1321)
T 4f4c_A 972 AIKEAFIQGLSYGCASSVL--YLLNT--CAYRMGLAL---IITDPPTMQPMRVLRVM----YAITISTSTLGFATSYFPE 1040 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTHH--HHHHH--HHHHHHHHT---TSSSSCSSCHHHHHHHH----HHHHTTTSSTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHH---HHCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999--99999--999875788---75376542147899999----9998778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CEEEEEEEEEEECCCEEEEECCC
Q ss_conf 9999999999999985300013368998889998766788829996459986999--70223102778099889998589
Q 000647 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPN 480 (1374)
Q Consensus 403 l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~--~~~l~~lsl~i~~G~~~~I~Gps 480 (1374)
+.....+.+|+.++++..++..... .....++..+.|+|+||+|.||++ .++|+|+||+|++||+++|||||
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~~~~~~------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~S 1114 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISKIDSLS------LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPS 1114 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSCTTC------CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECST
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC------CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCC
T ss_conf 9999999998999860766577766------7787888888189998798579999882124516998898999998999
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9966489998779986995489929988------4434627899157989867788975179988764677998889999
Q 000647 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1374)
Q Consensus 481 GsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~ 554 (1374)
|||||||+++|.|+|+|.+|+|.+||.+ .++++++++|||+|++|+||+||||.|+... ...++++++++
T Consensus 1115 GsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~----~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP----SSVTMAQVEEA 1190 (1321)
T ss_dssp TSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT----TTSCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCC----CCCCHHHHHHH
T ss_conf 98199999999568638997899999986549999998545998789973272399997454999----99999999999
Q ss_pred HHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf 9976983588509998555---68998795699999999997159989998668889999999999999980--597799
Q 000647 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1374)
Q Consensus 555 l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI 629 (1374)
++.+++++++..+|.+.++ +.|.+||||||||++||||++++|+|+|||||||+||.++|+.+++.+++ .++|+|
T Consensus 1191 l~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI 1270 (1321)
T 4f4c_A 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCI 1270 (1321)
T ss_dssp HHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEE
T ss_pred HHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99829849997176789998238891569999999999999971799899968111578999999999999973999899
Q ss_pred EECCCHHHHHHCCEEEEECC
Q ss_conf 99059226861367998149
Q 000647 630 TISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 630 ~itHr~~~~~~~d~il~l~~ 649 (1374)
+|+||++++..+|+|++||+
T Consensus 1271 ~IAHRLsTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1271 VIAHRLNTVMNADCIAVVSN 1290 (1321)
T ss_dssp EECSSSSTTTTCSEEEEESS
T ss_pred EECCCHHHHHHCCEEEEEEC
T ss_conf 96068999996999999989
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=498.33 Aligned_cols=528 Identities=20% Similarity=0.232 Sum_probs=377.5
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999997205450359999999999999999999999888999999982-49138999999999999999999999
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHST 163 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~~~~~ 163 (1374)
.+.+.++++.+.|.+ +.++..+++.++...+++..+.+.+.+++.+.. .+...+...+ ++.+...++..+
T Consensus 22 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 92 (598)
T 3qf4_B 22 TATLRRLLGYLRPHT-----FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYM----LILGTIYALTSL 92 (598)
T ss_dssp HHHHHHHGGGTGGGH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHHHHHHH
T ss_conf 899999999999999-----99999999999999999999999999999997368889999999----999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998411004434104899-9992579881199999999999998799999999999999
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~~-~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l 242 (1374)
..|+...+..+...++..+++.+.+++....++.++++. .++..+|+++|++.+.+.+...+..++..++..+... .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~-~~ 171 (598)
T 3qf4_B 93 LFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV-IM 171 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999999999999999999999999997799999768888999999999999999999999999999999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 98613669999999999999999999699999999999999999999999999499999818849999999999999999
Q 000647 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~ 322 (1374)
+.+.+|.+.+++++..++...+..++++...+...+.++..+...........+.+.|+.|+.|+.+.+++.+...+..+
T Consensus 172 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 251 (598)
T 3qf4_B 172 MFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRK 251 (598)
T ss_dssp HHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99998999999999999999999999999999999999999999999999973799999748709999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998998888866536--204425786514589999999999999999999999999999
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF--FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~--~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 400 (1374)
...+..+...+......++. .+ ....+++...+ ..|. .+.|.. +. +..++...+.++..+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~g~~l~~~g~-----ls~g~~--~~----~~~~~~~~~~~l~~l~~~~ 317 (598)
T 3qf4_B 252 VGTKAQIFSGVLPPLMNMVN-NL--GFALISGFGGWLALKDI-----ITVGTI--AT----FIGYSRQFTRPLNELSNQF 317 (598)
T ss_dssp HHHHHHHHTTTHHHHHHHHH-HH--HHHHHHHHHHHHGGGTS-----SCHHHH--HH----HHTTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHCCC-----CCHHHH--HH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999-99--99999999999998599-----789999--99----9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCC
Q ss_conf 99999999999999998530001336899888999876678882999645998699970223102778099889998589
Q 000647 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1374)
Q Consensus 401 ~~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~Gps 480 (1374)
..+.+...+.+|+.++++.+++..... ........+.|+++||++.|+++.++++|+||++++|+.++|+|||
T Consensus 318 ~~~~~~~~s~~ri~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~s 390 (598)
T 3qf4_B 318 NMIQMALASAERIFEILDLEEEKDDPD-------AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPT 390 (598)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCSS-------CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCC
T ss_conf 999999999999999976887777777-------7777777771899998997799986012227998699889998999
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9966489998779986995489929988------4434627899157989867788975179988764677998889999
Q 000647 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1374)
Q Consensus 481 GsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~ 554 (1374)
|||||||+++|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++||+.++.+. .+++++.++
T Consensus 391 GsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~------~~~~~~~~~ 464 (598)
T 3qf4_B 391 GSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG------ATDEEIKEA 464 (598)
T ss_dssp TSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT------CCTTHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCC------CCHHHHHHH
T ss_conf 99699999999458579980899999983018899998410899079823246399997447999------999999999
Q ss_pred HHHCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf 99769835885099985556---8998795699999999997159989998668889999999999999980--597799
Q 000647 555 LKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1374)
Q Consensus 555 l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI 629 (1374)
++.++++++++++|.+.++. .|.+||||||||++||||++++|++++||||||+||.+++..+.+.+++ .|+|+|
T Consensus 465 ~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i 544 (598)
T 3qf4_B 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSI 544 (598)
T ss_dssp TTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99969788897464532364227889879999999999999964999999989766799999999999999980899899
Q ss_pred EECCCHHHHHHCCEEEEECC
Q ss_conf 99059226861367998149
Q 000647 630 TISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 630 ~itHr~~~~~~~d~il~l~~ 649 (1374)
+||||++.+..+|++++|++
T Consensus 545 ~itH~l~~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 545 IIAHRLNTIKNADLIIVLRD 564 (598)
T ss_dssp EESCCTTHHHHCSEEEEECS
T ss_pred EEECCHHHHHCCCEEEEEEC
T ss_conf 99427789971998999989
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=496.08 Aligned_cols=530 Identities=15% Similarity=0.184 Sum_probs=373.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997205450359999999999999999999999888999999982491----38999999999999999999999
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRV----PLFFQLISENILLCFLLSTMHST 163 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~----~~f~~~l~~~~~~~~~~~~~~~~ 163 (1374)
++++++++.|+++ .++..+++.++...+.+..+.+.+.++|.+..... ..+........++.+...++...
T Consensus 2 ~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (578)
T 4a82_A 2 IKRYLQFVKPYKY-----RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPP 76 (578)
T ss_dssp HHHHHHHHGGGHH-----HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999889999-----99999999999999999999999999999981687114677888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998411004434104899-9992579881199999999999998799999999999999
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~~-~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l 242 (1374)
..|+...+..+...++..+++.+.+++....+..++++. .++..+|+++|++.+.+.+...+...+..++..+...+ +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~-~ 155 (578)
T 4a82_A 77 IEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALS-I 155 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999999999999999999999987899997689869999999999999999999999999999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 98613669999999999999999999699999999999999999999999999499999818849999999999999999
Q 000647 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~ 322 (1374)
+.+.+|.+.+++++..++...+...+++...+...+.++..++..........+.+.|+.|+.|+.+.+++.+...+..+
T Consensus 156 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (578)
T 4a82_A 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235 (578)
T ss_dssp HHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99996999999999999999999999999999999999999999999999982499999816649999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999899888886653--6204425786514589999999999999999999999999999
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 400 (1374)
...+..+..........++. .+.. ..+++... +..|.+ +.|.. +. +..++...+.++..+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~v~~~g~~~v~~g~l-----t~g~l--~~----~~~~~~~~~~~l~~l~~~~ 301 (578)
T 4a82_A 236 RALKHTRWNAYSFAAINTVT-DIGP--IIVIGVGAYLAISGSI-----TVGTL--AA----FVGYLELLFGPLRRLVASF 301 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHTSC-----CHHHH--HH----HHHTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHCCCC-----CHHHH--HH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999-9999--9999999999985995-----89999--99----9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCEEEEEEEEEEECCCEEEEECC
Q ss_conf 99999999999999998530001336899888999876678882999645998699-97022310277809988999858
Q 000647 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGP 479 (1374)
Q Consensus 401 ~~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~-~~~~l~~lsl~i~~G~~~~I~Gp 479 (1374)
..+.+...+.+|+.++++.+++...... ........+.|+++|+++.||+ +.++++|+||++++||.++|+||
T Consensus 302 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~ 375 (578)
T 4a82_A 302 TTLTQSFASMDRVFQLIDEDYDIKNGVG------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGM 375 (578)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSSCCCTT------CCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECC
T ss_conf 9999999999999999768976667877------6666777880799999997589997413433799879999999899
Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99966489998779986995489929988------443462789915798986778897517998876467799888999
Q 000647 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1374)
Q Consensus 480 sGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~ 553 (1374)
||||||||+++|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++||+.++.+. .+++++.+
T Consensus 376 sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~------~~~~~~~~ 449 (578)
T 4a82_A 376 SGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT------ATDEEVVE 449 (578)
T ss_dssp TTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS------CCHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCC------CCHHHHHH
T ss_conf 998599999998467889996799999984427899996006899289834764599998527999------88999999
Q ss_pred HHHHCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEE
Q ss_conf 999769835885099985556---8998795699999999997159989998668889999999999999980--59779
Q 000647 554 LLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1374)
Q Consensus 554 ~l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~Ti 628 (1374)
+++.++++++++++|.+.++. .|.+||||||||+++|||++++|++++||||||+||+++++.+.+.+++ .++|+
T Consensus 450 ~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~ 529 (578)
T 4a82_A 450 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 529 (578)
T ss_dssp HHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHCCHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99880959999757330102530688967999999999999997499999997865457999999999999998089979
Q ss_pred EEECCCHHHHHHCCEEEEECC
Q ss_conf 999059226861367998149
Q 000647 629 ITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 629 I~itHr~~~~~~~d~il~l~~ 649 (1374)
|+||||++.+..+|++++|++
T Consensus 530 i~itH~l~~~~~~d~i~~l~~ 550 (578)
T 4a82_A 530 LIVAHRLSTITHADKIVVIEN 550 (578)
T ss_dssp EEECSSGGGTTTCSEEEEEET
T ss_pred EEEECCHHHHHCCCEEEEEEC
T ss_conf 998317899971998999989
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=490.19 Aligned_cols=523 Identities=17% Similarity=0.192 Sum_probs=363.9
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997205450359999999999999999999999888999999982-4913899999999999999999999999999999
Q 000647 93 AILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHSTSKYITGTL 171 (1374)
Q Consensus 93 ~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l 171 (1374)
++..|++ +.++..+++.++...+.+..+.+.+.++|.... .+...++...+ +.+...++.....++...+
T Consensus 16 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 86 (587)
T 3qf4_A 16 RYLKPYW-----IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGI----LMLIVALIGAVGGIGCTVF 86 (587)
T ss_dssp GGTGGGH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999-----999999999999999999999999999999873698799999999----9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999841100443410489-9999257988119999999999999879999999999999998613669
Q 000647 172 SLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKY 250 (1374)
Q Consensus 172 ~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~-~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~~~~~~~l 250 (1374)
..+...++..+++.+.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+. ...++.+.+|.+
T Consensus 87 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~-~~~~l~~~~~~l 165 (587)
T 3qf4_A 87 ASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVG-GIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999999999999978897997658889999999999999999999999999999999999-999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999969999999999999999999999999949999981884999999999999999999999999
Q 000647 251 VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHD 330 (1374)
Q Consensus 251 ~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~~~~~~~~ 330 (1374)
++++++..++...+..++.+...+...+.++..+...........+.+.|+.|+.|+.+.+++.+..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998559999986214999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999989988888665362044257865145899999999999999999999999999999999999999
Q 000647 331 HWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYA 410 (1374)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~l~~~~ 410 (1374)
. +................+++...+.. ..+..+.|.. ++. ..++...+.++..+...+..+.+...+.
T Consensus 246 ~---~~~~~~~~~~~~~~~~~vl~~g~~~v---~~g~lt~g~~--~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 313 (587)
T 3qf4_A 246 I---VFALPLFIFIVNMGMIAVLWFGGVLV---RNNQMEIGSI--MAY----TNYLMQIMFSLMMIGNILNFIVRASASA 313 (587)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9---99999999999999999999999999---8499389999--999----9999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CCEEEEEEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 9999998530001336899888999876678882999645998699-970223102778099889998589996648999
Q 000647 411 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFR 489 (1374)
Q Consensus 411 ~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~-~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~ 489 (1374)
+|+.++++.+++...... ........+.|+++|+++.||+ ++++++|+||++++||.++|+||||||||||++
T Consensus 314 ~ri~~~l~~~~~~~~~~~------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 314 KRVLEVLNEKPAIEEADN------ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp HHHHHHHHCCCSCCCCTT------CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCC------CCCCCCCCCCEEEEEEEEECCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 999999768976578877------65668888807997889984899976421117998699889998999997999999
Q ss_pred HHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH
Q ss_conf 8779986995489929988------4434627899157989867788975179988764677998889999997698358
Q 000647 490 VLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563 (1374)
Q Consensus 490 ~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 563 (1374)
+|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++||+.++... .+++++.++++.++++++
T Consensus 388 ~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~ 461 (587)
T 3qf4_A 388 LIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED------ATDDEIVEAAKIAQIHDF 461 (587)
T ss_dssp TTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS------CCHHHHHHHHHHTTCHHH
T ss_pred HHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCC------CCHHHHHHHHHHHCCHHH
T ss_conf 99278669986798999983407899998413897789867675599998524889------999999999999684999
Q ss_pred HHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHH
Q ss_conf 8509998555---68998795699999999997159989998668889999999999999980--597799990592268
Q 000647 564 LDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV 638 (1374)
Q Consensus 564 ~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~ 638 (1374)
++++|.+.++ +.|.+||||||||++||||++++|++++||||||+||+++++.+.+.+++ .++|+|+||||++.+
T Consensus 462 i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~ 541 (587)
T 3qf4_A 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA 541 (587)
T ss_dssp HHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 97565312127518989929999999999999972999999979754479999999999999867999899982276889
Q ss_pred HHCCEEEEECC
Q ss_conf 61367998149
Q 000647 639 AFHDVVLSLDG 649 (1374)
Q Consensus 639 ~~~d~il~l~~ 649 (1374)
..+|++++|++
T Consensus 542 ~~~d~i~vl~~ 552 (587)
T 3qf4_A 542 LLADKILVLHE 552 (587)
T ss_dssp TTSSEEEEEET
T ss_pred HHCCEEEEEEC
T ss_conf 81998999989
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=487.02 Aligned_cols=530 Identities=17% Similarity=0.195 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999997205450359999999999999999999999888999999982491389999999999999999999999
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++.+.+++++..|.+. .++..+++.++...+.+..+.+.+.+++.+........ +....+..+...++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 81 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKA-----GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLVVIGLMILRGIT 81 (582)
T ss_dssp CHHHHHHHHHHGGGHH-----HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHH---HHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999-----99999999999999999999999999998843686579---999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999841100443410489-999925798811999999999999987999999999999999
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~-~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~ 243 (1374)
.|+...+..+...++..+++.+.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+...+. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~-l 160 (582)
T 3b60_A 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM-M 160 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999999999999999999999809999978898658999999879999999999999999999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86136699999999999999999996999999999999999999999999994999998188499999999999999999
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~ 323 (1374)
.+.+|.+++++++..++...+...+++...+...+.++..+.+.........+.+.|+.|+.|+.+.+++.+..++..+.
T Consensus 161 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 240 (582)
T 3b60_A 161 FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQ 240 (582)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99809999999999999999999999999999999999999999999999961999998376899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999899888886653620442-578651458999999999999999999999999999999
Q 000647 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1374)
..+..+...+......++. .+ ....+++ +++.. ..+..+.|.. +. +..++...+.++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~----~g~~~v~~g~lt~g~l--~~----~~~~~~~~~~pl~~l~~~~~~ 307 (582)
T 3b60_A 241 GMKMVSASSISDPIIQLIA-SL--ALAFVLY----AASFPSVMDSLTAGTI--TV----VFSSMIALMRPLKSLTNVNAQ 307 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HH--HHHHHHH----HHHSSSTTSSSHHHHH--HH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HH--HHHHHHH----HHHHHHHCCCCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999-99--9999999----9999998499989999--99----999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CEEEEEEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999985300013368998889998766788829996459986999-702231027780998899985899
Q 000647 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1374)
Q Consensus 403 l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~-~~~l~~lsl~i~~G~~~~I~GpsG 481 (1374)
+.+...+.+|+.++++.+++... . ........+.|+++|+++.|+++ +++++|+||++++||.++|+||||
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~~~--~------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sG 379 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEKDE--G------KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSG 379 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCCC--C------CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC--C------CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCC
T ss_conf 99999999999999759987667--7------777778888479998899739999744156159976999899989999
Q ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 966489998779986995489929988------44346278991579898677889751799887646779988899999
Q 000647 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1374)
Q Consensus 482 sGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l 555 (1374)
||||||+++|+|+++|++|+|.++|.+ .+++++++|+||+|+++++|++||+.++... ..+++++.+++
T Consensus 380 sGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~~~~~~~~~~l 454 (582)
T 3b60_A 380 SGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-----EYSREQIEEAA 454 (582)
T ss_dssp SSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-----CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCC-----CCCHHHHHHHH
T ss_conf 9899999998610689897697999982306999999608088068747787899998545999-----98999999999
Q ss_pred HHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEE
Q ss_conf 976983588509998555---68998795699999999997159989998668889999999999999980--5977999
Q 000647 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1374)
Q Consensus 556 ~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~ 630 (1374)
+.++++++++++|.+.++ +.|..||||||||+++|||++++|++++||||||+||+++++.+.+.+++ .|+|+|+
T Consensus 455 ~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b60_A 455 RMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534 (582)
T ss_dssp HTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98497999984504114511479887899999999999999728998999786555798999999999999967997999
Q ss_pred ECCCHHHHHHCCEEEEECC
Q ss_conf 9059226861367998149
Q 000647 631 ISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 631 itHr~~~~~~~d~il~l~~ 649 (1374)
||||++.+..+|+++++++
T Consensus 535 itH~~~~~~~~d~i~~l~~ 553 (582)
T 3b60_A 535 IAHRLSTIEQADEIVVVED 553 (582)
T ss_dssp ECSCGGGTTTCSEEEEEET
T ss_pred EECCHHHHHHCCEEEEEEC
T ss_conf 9454778985998999978
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=485.81 Aligned_cols=529 Identities=16% Similarity=0.189 Sum_probs=376.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999997205450359999999999999999999999888999999982491389999999999999999999999
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++.+.+++++..|.+ +.++..+++.++...+.+..+.+.+.+++.+........ +....+..+...++..+.
T Consensus 10 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 81 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYK-----AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPFMILGLMFVRGLS 81 (582)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 799999999988999-----999999999999999999999999999999864686679---999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999841100443410489-999925798811999999999999987999999999999999
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~-~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~ 243 (1374)
.|+...+..+...++..+++.+.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+..... +
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~-l 160 (582)
T 3b5x_A 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL-M 160 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999999999999999999999999999869999977898789999999889999999999999999999999999999-9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86136699999999999999999996999999999999999999999999994999998188499999999999999999
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~ 323 (1374)
.+.+|.+++++++..++...+...+++...+...+.++..+.+.........+.+.|+.|+.|+.+.+++.+..++..+.
T Consensus 161 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 240 (582)
T 3b5x_A 161 FWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99829999999999999999999999999999999999999999999999951999997087599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998998888866536--2044257865145899999999999999999999999999999
Q 000647 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF--FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1374)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~--~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 401 (1374)
..+..+...+......++. .+. ...+++...+ ..|. .+.|... . +..++...+.++..+...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~~g~~~v~~g~-----lt~g~l~--~----~~~~~~~~~~pl~~l~~~~~ 306 (582)
T 3b5x_A 241 TMKLVSAQSIADPVIQMIA-SLA--LFAVLFLASVDSIRAE-----LTPGTFT--V----VFSAMFGLMRPLKALTSVTS 306 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHCCC-----CCHHHHH--H----HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999-999--9999999999998599-----8899999--9----99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-CEEEEEEEEEEECCCEEEEECCC
Q ss_conf 99999999999999985300013368998889998766788829996459986999-70223102778099889998589
Q 000647 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1374)
Q Consensus 402 ~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~-~~~l~~lsl~i~~G~~~~I~Gps 480 (1374)
.+.+...+.+|+.++++.+++... .. .......+.|+++|+++.|+++ +++++|+||++++||.++|+|||
T Consensus 307 ~~~~~~~a~~ri~~~l~~~~~~~~-~~-------~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~s 378 (582)
T 3b5x_A 307 EFQRGMAACQTLFGLMDLETERDN-GK-------YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRS 378 (582)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CC-------CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEECCC
T ss_conf 999999999999999758976777-77-------7777788828999989972899865400416998799989998999
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9966489998779986995489929988------4434627899157989867788975179988764677998889999
Q 000647 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1374)
Q Consensus 481 GsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~ 554 (1374)
|||||||+++|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++||+.++... ..+++++.++
T Consensus 379 GsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-----~~~~~~~~~~ 453 (582)
T 3b5x_A 379 GSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-----EYTREQIEQA 453 (582)
T ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC-----CCCHHHHHHH
T ss_conf 99799999999657789998798999985638899996485898279905310299998566889-----9999999999
Q ss_pred HHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf 9976983588509998555---68998795699999999997159989998668889999999999999980--597799
Q 000647 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1374)
Q Consensus 555 l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI 629 (1374)
++.++++++++++|.+.++ +.|.+||||||||+++|||++++|++++||||||+||+++++.+.+.+++ .|+|+|
T Consensus 454 ~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi 533 (582)
T 3b5x_A 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533 (582)
T ss_pred HHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99879899998476533451068888479999999999999974999999978544689999999999999972899899
Q ss_pred EECCCHHHHHHCCEEEEECC
Q ss_conf 99059226861367998149
Q 000647 630 TISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 630 ~itHr~~~~~~~d~il~l~~ 649 (1374)
+||||++.+..+|+++++++
T Consensus 534 ~itH~~~~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 534 VIAHRLSTIEQADEILVVDE 553 (582)
T ss_pred EEECCHHHHHHCCEEEEEEC
T ss_conf 99368899981998999989
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=484.86 Aligned_cols=538 Identities=20% Similarity=0.223 Sum_probs=372.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999997205450359999999999999999999999888999999982491389999999999999999999999
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++.+.+++++..|.++ .++..+++.++...+.+..+.+.+.+++.+.......+...+..+.++.+...++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (595)
T 2yl4_A 4 LPEARKLLGLAYPERR-----RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAA 78 (595)
T ss_dssp HHHHHHHHHHHGGGHH-----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4799999999887899-----99999999999999999999999999999973574026679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999841100443410489-999925798811999999999999987999999999999999
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~-~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~ 243 (1374)
.|+...+..+...++..+++.+.+++....+..++++ ..++..+|+++|++.+.+.+...+...+..++..+.... ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~-~l 157 (595)
T 2yl4_A 79 NAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGIS-MM 157 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999999999999999999999999981999997779848899999999999999999999999999999999999-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86136699999999999999999996999999999999999999999999994999998188499999999999999999
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~ 323 (1374)
.+++|.+++++++..++...+...+.+...+...+.++..++..........+.+.|+.|+.|+.+.+++.+..++..+.
T Consensus 158 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 237 (595)
T 2yl4_A 158 FFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQL 237 (595)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99819999999999999999999999999999999999999999999999811999998375699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998998888866536--2044257865145899999999999999999999999999999
Q 000647 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF--FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1374)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~--~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 401 (1374)
..+..+...+......++. .+ ....+++...+ ..|. .+.|... . +..+....+.++..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~g~~~v~~g~-----lt~g~l~--~----~~~~~~~~~~pl~~l~~~~~ 303 (595)
T 2yl4_A 238 ARKEAFARAGFFGATGLSG-NL--IVLSVLYKGGLLMGSAH-----MTVGELS--S----FLMYAFWVGISIGGLSSFYS 303 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHTTS-----CCHHHHH--H----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHCCC-----CCHHHHH--H----HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999-99--99999999999998699-----7899999--9----99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEEEECCCC--CEEEEEEEEEEECCCEEEEEC
Q ss_conf 9999999999999998530001336899888999876678882-9996459986999--702231027780998899985
Q 000647 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY-IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1374)
Q Consensus 402 ~l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~v~~~~p~~--~~~l~~lsl~i~~G~~~~I~G 478 (1374)
.+.+...+.+|+.++++.+++...... ........+. |+++|+++.|+++ .++++|+||++++|+.++|+|
T Consensus 304 ~~~~~~~s~~ri~~~l~~~~~~~~~~~------~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG 377 (595)
T 2yl4_A 304 ELMKGLGAGGRLWELLEREPKLPFNEG------VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVG 377 (595)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSCSSCS------BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEC
T ss_conf 999999999999999838976677778------77776789983899988998589988812011279984998899989
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 899966489998779986995489929988------44346278991579898677889751799887646779988899
Q 000647 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1374)
Q Consensus 479 psGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~ 552 (1374)
|||||||||+++|+|+++|++|+|.++|.+ .+++++++||||+|+++++|++||+.++.... ...+++++.
T Consensus 378 ~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~ 454 (595)
T 2yl4_A 378 PSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP---SSVTAEEIQ 454 (595)
T ss_dssp CTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSST---TTSCHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCC---CCCCHHHHH
T ss_conf 99997999999982585789837999999811179999973228983688326877999984058776---656899999
Q ss_pred HHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCE
Q ss_conf 999976983588509998555---68998795699999999997159989998668889999999999999980--5977
Q 000647 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1374)
Q Consensus 553 ~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~T 627 (1374)
++++.++++++++++|.+.++ +.|.+||||||||+++|||++++|++++||||||+||.++++.+.+.+++ .++|
T Consensus 455 ~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 534 (595)
T 2yl4_A 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRT 534 (595)
T ss_dssp HHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 99998697999974732013501688786899999999999999759999999886668998999999999999965997
Q ss_pred EEEECCCHHHHHHCCEEEEECCCCC
Q ss_conf 9999059226861367998149993
Q 000647 628 CITISHRPALVAFHDVVLSLDGEGE 652 (1374)
Q Consensus 628 iI~itHr~~~~~~~d~il~l~~~g~ 652 (1374)
+|+||||++.+..+|+++++++ |.
T Consensus 535 vi~itH~~~~~~~~d~i~~l~~-G~ 558 (595)
T 2yl4_A 535 VLVIAHRLSTIKNANMVAVLDQ-GK 558 (595)
T ss_dssp EEEECCCHHHHHHSSEEEEEET-TE
T ss_pred EEEEECCHHHHHCCCEEEEEEC-CE
T ss_conf 9999468789975998999989-98
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=468.26 Aligned_cols=534 Identities=18% Similarity=0.197 Sum_probs=352.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999972054503599999999999999999999998889999999824913-8999999999999999999999999
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP-LFFQLISENILLCFLLSTMHSTSKY 166 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~-~f~~~l~~~~~~~~~~~~~~~~~~y 166 (1374)
+.++++...|.|.. ++..+++.++...+....+.+.+.+++........ ........+.++.+...++..+..+
T Consensus 693 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 693 FWRILKLNSTEWPY-----FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp TTHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999984515799-----9999999999999999999999999999855685033677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999841100443410489---999925798811999999999999987999999999999999
Q 000647 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 167 l~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~---~~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l~ 243 (1374)
+...+..+...+++.+++.+.|++....+++++|. ..++..+|+++|++.+...+...+...+..++..+. ...++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~-~~i~~ 846 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT-GIIIS 846 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999999999999999999998399888757899889999999999999999999999999999999999-99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86136699999999999999999996999999999999999999999999994999998188499999999999999999
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~~ 323 (1374)
.+.+|.+++++++..++.........+.+.+...+.++..............+.+.|+.|+.|+.+.+++.+..+...+.
T Consensus 847 ~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~ 926 (1284)
T 3g5u_A 847 LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN 926 (1284)
T ss_dssp HSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99969999999999999999999999999999999999999999999999988999998465999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998998888866536204425-78651458999999999999999999999999999999
Q 000647 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1374)
..+ ...+.+....+...........+++ +++... .+..+.+....+ ...+......++.+......
T Consensus 927 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~lv~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 993 (1284)
T 3g5u_A 927 AMK---KAHVFGITFSFTQAMMYFSYAAAFR----FGAYLVTQQLMTFENVLLV------FSAIVFGAMAVGQVSSFAPD 993 (1284)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCSSSCSCSTTHHHH------HHHHHHHHHHHHHHTSSSCC
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999---9999999999999999999999999----9999999098069999999------99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC--CEEEEEEEEEEECCCEEEEECCC
Q ss_conf 9999999999999985300013368998889998766788829996459986999--70223102778099889998589
Q 000647 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPN 480 (1374)
Q Consensus 403 l~~l~~~~~Ri~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~p~~--~~~l~~lsl~i~~G~~~~I~Gps 480 (1374)
+.+...+.+|+.++++..++...... . ........+.|+++||++.||+. .++++|+||++++||+++|+|||
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~~~~~~~--~---~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~s 1068 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPEIDSYST--Q---GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCSSSSCCS--S---CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC--C---CCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEEECCC
T ss_conf 99999999999999838876666555--6---654567778579999899779999870020305997699889998899
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9966489998779986995489929988------4434627899157989867788975179988764677998889999
Q 000647 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1374)
Q Consensus 481 GsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~ 554 (1374)
|||||||+++|.|+++|.+|+|.++|.+ ..++++++||||+|.++++|++||+.++.... ..+++++.++
T Consensus 1069 GsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~----~~~~~~i~~~ 1144 (1284)
T 3g5u_A 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR----VVSYEEIVRA 1144 (1284)
T ss_dssp STTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSC----CCCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCC----CCCHHHHHHH
T ss_conf 997899999994686789977989999800078999970268987787406666999974668778----9999999999
Q ss_pred HHHCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEE
Q ss_conf 99769835885099985556---8998795699999999997159989998668889999999999999980--597799
Q 000647 555 LKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1374)
Q Consensus 555 l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI 629 (1374)
++.++++++++++|.+.++. .|..||||||||++||||++++|+++|||||||+||.++++.+++.+++ .|+|+|
T Consensus 1145 ~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi 1224 (1284)
T 3g5u_A 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224 (1284)
T ss_dssp HHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEE
T ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99839599997270424561178889338999999999999974999999868755579999999999999867999899
Q ss_pred EECCCHHHHHHCCEEEEECC
Q ss_conf 99059226861367998149
Q 000647 630 TISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 630 ~itHr~~~~~~~d~il~l~~ 649 (1374)
+||||++.+..+|++++|++
T Consensus 1225 ~isH~l~~i~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1225 VIAHRLSTIQNADLIVVIQN 1244 (1284)
T ss_dssp EECSCTTGGGSCSEEEEEET
T ss_pred EEECCHHHHHCCCEEEEEEC
T ss_conf 99558799980998999989
Done!