BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000648
         (1373 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UYZ1|VORA_PYRAB Ketoisovalerate oxidoreductase subunit VorA OS=Pyrococcus abyssi
           (strain GE5 / Orsay) GN=vorA PE=4 SV=1
          Length = 395

 Score = 36.6 bits (83), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 18/124 (14%)

Query: 478 LHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLP 537
           LH  +   LPI ++D  + +    +VWD Q +   Q+    ++   E   QE+  DGVL 
Sbjct: 96  LHWAAGARLPIVMVDVNRAMAPPWSVWDDQTDSLSQRDTGWMQFYAENN-QEV-YDGVLM 153

Query: 538 SSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVV 597
           +  +A      E V V  PA  + S+        +I+ ++ E++  +  +  DE L    
Sbjct: 154 AFKVA------ETVNV--PAMVVESA--------FILSHTYEIVNMIPQELVDEFLPPRK 197

Query: 598 PLYT 601
           PLY+
Sbjct: 198 PLYS 201


>sp|Q58750|Y1355_METJA Uncharacterized protein MJ1355 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJ1355 PE=4 SV=1
          Length = 571

 Score = 35.4 bits (80), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 444 LQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASL-HIGSSLSLPIGVIDSEKCVPVNKN 502
           +QG  GG+ + I + L   + KG +  + N    L  +G  +   I +   ++ +     
Sbjct: 427 IQGHVGGDEKEIIKSLGEAESKGFIKELQNKMIKLTELGEEVKTAIEMAKIQELLATKFA 486

Query: 503 VWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISS 562
           V           +P+T  +LK     + E D V    +   ++   EIV + +  S    
Sbjct: 487 V-----------TPTTFNILKTIYDHKEEFDKVWKEKSEGKEHKENEIVLLAKYLSLTPE 535

Query: 563 SASKNLVQKYIVKN 576
              KNLV   I+KN
Sbjct: 536 EIKKNLV---ILKN 546


>sp|Q8GYY0|1A112_ARATH Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2
            SV=2
          Length = 495

 Score = 35.0 bits (79), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 1290 ILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEK 1349
            I   DGII LG    T+CF +++  +S   +E++ Q ++ + ++  I         A+ K
Sbjct: 99   ITNTDGIIQLGLAESTLCFDLLQRWMSENLMESMMQSDDGEFDISSI---------AMYK 149

Query: 1350 DLEKLKNSEDKFNSFM 1365
              E L      F  FM
Sbjct: 150  PFEGLLELRVAFADFM 165


>sp|Q8UDF7|CARA_AGRT5 Carbamoyl-phosphate synthase small chain OS=Agrobacterium tumefaciens
            (strain C58 / ATCC 33970) GN=carA PE=3 SV=2
          Length = 401

 Score = 33.9 bits (76), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 980  KVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLC 1039
            KV +V A +  ++DI     DG VFL  GP      G + VP+++  N ++SE+  +G+C
Sbjct: 229  KVTVVPA-QTSAEDILALKPDG-VFLSNGPGDPAATGEYAVPVIQ--NLIKSELPIFGIC 284

Query: 1040 IGRHEKALKL 1049
            +G     L +
Sbjct: 285  LGHQMLGLAV 294


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,767,697
Number of Sequences: 539616
Number of extensions: 22740132
Number of successful extensions: 59083
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 59075
Number of HSP's gapped (non-prelim): 17
length of query: 1373
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1243
effective length of database: 121,419,379
effective search space: 150924288097
effective search space used: 150924288097
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)