Query 000648
Match_columns 1373
No_of_seqs 158 out of 239
Neff 3.4
Searched_HMMs 46136
Date Mon Apr 1 21:25:31 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.9 2E-24 4.3E-29 272.3 20.0 206 1078-1342 478-692 (1163)
2 TIGR02169 SMC_prok_A chromosom 99.9 6.2E-23 1.3E-27 253.4 22.2 174 1111-1339 520-696 (1164)
3 KOG0996 Structural maintenance 99.8 8E-19 1.7E-23 214.5 20.8 178 1110-1340 614-801 (1293)
4 KOG0964 Structural maintenance 99.8 5.9E-18 1.3E-22 203.8 21.4 174 1110-1342 520-703 (1200)
5 KOG0933 Structural maintenance 99.7 6.4E-17 1.4E-21 195.8 19.0 272 1018-1342 400-702 (1174)
6 KOG0018 Structural maintenance 99.7 1.9E-15 4E-20 184.6 19.8 142 1110-1303 500-646 (1141)
7 PF06470 SMC_hinge: SMC protei 99.5 2.6E-14 5.7E-19 135.5 11.0 118 1112-1279 2-120 (120)
8 TIGR02168 SMC_prok_B chromosom 99.3 1.1E-10 2.4E-15 144.9 23.6 143 1111-1301 518-665 (1179)
9 TIGR02168 SMC_prok_B chromosom 97.9 8.4E-05 1.8E-09 93.5 13.4 49 1254-1302 592-661 (1179)
10 KOG0250 DNA repair protein RAD 97.6 0.0046 9.9E-08 79.1 20.9 50 1110-1160 491-540 (1074)
11 PF13589 HATPase_c_3: Histidin 97.2 8.5E-05 1.8E-09 74.2 0.6 89 5-109 46-136 (137)
12 PRK04863 mukB cell division pr 93.7 0.59 1.3E-05 63.4 13.6 47 1110-1160 681-728 (1486)
13 PRK05218 heat shock protein 90 86.6 5 0.00011 50.4 11.8 57 250-324 282-338 (613)
14 KOG0979 Structural maintenance 84.0 14 0.0003 48.8 13.9 99 1110-1241 446-547 (1072)
15 PTZ00130 heat shock protein 90 70.8 3.6 7.8E-05 53.2 3.6 92 5-117 148-239 (814)
16 PF07106 TBPIP: Tat binding pr 62.0 21 0.00044 37.7 6.6 61 1031-1097 72-132 (169)
17 PF06470 SMC_hinge: SMC protei 60.1 14 0.00029 35.7 4.5 53 1224-1288 2-63 (120)
18 PTZ00272 heat shock protein 83 59.4 8.7 0.00019 49.3 3.9 56 5-64 85-140 (701)
19 PRK02119 hypothetical protein; 56.5 33 0.00072 32.6 6.2 55 1025-1087 3-57 (73)
20 PRK04325 hypothetical protein; 54.8 35 0.00076 32.4 6.1 55 1026-1088 4-58 (74)
21 PRK11637 AmiB activator; Provi 53.2 26 0.00057 42.0 6.3 11 1287-1297 385-395 (428)
22 PRK14083 HSP90 family protein; 53.1 16 0.00034 46.3 4.6 224 7-324 77-318 (601)
23 PRK00295 hypothetical protein; 52.5 46 0.00099 31.2 6.4 51 1029-1087 3-53 (68)
24 PF05266 DUF724: Protein of un 51.4 40 0.00088 37.1 6.8 73 1019-1092 98-170 (190)
25 PRK11637 AmiB activator; Provi 51.2 32 0.0007 41.2 6.6 19 1030-1048 46-64 (428)
26 PRK02793 phi X174 lysis protei 48.6 56 0.0012 30.9 6.4 55 1027-1089 4-58 (72)
27 PF05739 SNARE: SNARE domain; 48.1 1E+02 0.0022 27.1 7.7 56 1315-1370 2-57 (63)
28 KOG4603 TBP-1 interacting prot 47.9 59 0.0013 35.9 7.2 56 1031-1092 79-134 (201)
29 PRK04406 hypothetical protein; 47.4 66 0.0014 30.9 6.7 53 1027-1087 7-59 (75)
30 PRK00736 hypothetical protein; 46.2 62 0.0013 30.4 6.2 51 1029-1087 3-53 (68)
31 PF12329 TMF_DNA_bd: TATA elem 45.6 79 0.0017 30.1 6.9 56 1028-1091 16-71 (74)
32 PF04102 SlyX: SlyX; InterPro 45.3 53 0.0011 30.7 5.6 51 1029-1087 2-52 (69)
33 PRK00846 hypothetical protein; 44.8 75 0.0016 30.9 6.7 57 1025-1089 7-63 (77)
34 COG4942 Membrane-bound metallo 42.2 62 0.0013 39.7 7.0 61 1041-1101 62-128 (420)
35 PF07106 TBPIP: Tat binding pr 42.0 98 0.0021 32.8 7.7 54 1019-1072 74-136 (169)
36 cd00632 Prefoldin_beta Prefold 40.9 60 0.0013 32.0 5.6 42 1024-1065 63-104 (105)
37 COG4942 Membrane-bound metallo 40.6 63 0.0014 39.7 6.8 72 1025-1097 39-110 (420)
38 PF08317 Spc7: Spc7 kinetochor 40.4 70 0.0015 37.4 7.0 8 947-954 63-70 (325)
39 PF13863 DUF4200: Domain of un 39.7 1.1E+02 0.0024 30.4 7.4 56 1313-1368 3-58 (126)
40 COG2433 Uncharacterized conser 39.4 76 0.0017 40.5 7.3 51 1019-1069 417-467 (652)
41 PF07851 TMPIT: TMPIT-like pro 39.3 94 0.002 37.2 7.7 107 1021-1129 8-124 (330)
42 COG2900 SlyX Uncharacterized p 38.6 99 0.0021 30.0 6.3 56 1027-1090 4-59 (72)
43 PF03962 Mnd1: Mnd1 family; I 37.6 1E+02 0.0022 33.8 7.3 61 1024-1084 69-142 (188)
44 PF07889 DUF1664: Protein of u 36.8 1.1E+02 0.0023 32.2 6.9 17 1078-1094 107-123 (126)
45 PRK10884 SH3 domain-containing 36.3 93 0.002 34.8 6.8 15 1027-1041 96-110 (206)
46 PF05266 DUF724: Protein of un 35.0 1.1E+02 0.0023 33.9 6.9 51 1030-1088 130-180 (190)
47 cd00193 t_SNARE Soluble NSF (N 34.5 2.7E+02 0.0058 23.7 7.9 56 1314-1369 3-58 (60)
48 PF10267 Tmemb_cc2: Predicted 34.0 1.4E+02 0.0031 36.5 8.2 25 1348-1372 47-71 (395)
49 TIGR03769 P_ac_wall_RPT actino 32.1 27 0.00059 30.0 1.5 17 626-642 7-23 (41)
50 PF11932 DUF3450: Protein of u 31.0 1.1E+02 0.0024 34.3 6.5 10 1271-1280 224-233 (251)
51 PF04111 APG6: Autophagy prote 30.0 1.3E+02 0.0028 35.4 6.9 43 1027-1069 46-88 (314)
52 PF12325 TMF_TATA_bd: TATA ele 29.9 1.6E+02 0.0034 30.7 6.7 46 1024-1069 16-61 (120)
53 PF05377 FlaC_arch: Flagella a 29.0 1.1E+02 0.0024 28.3 4.8 13 1047-1059 16-28 (55)
54 PF08614 ATG16: Autophagy prot 28.8 1.7E+02 0.0037 31.8 7.2 42 1028-1069 120-161 (194)
55 PF10805 DUF2730: Protein of u 28.5 1.4E+02 0.003 30.1 5.9 54 1028-1089 32-87 (106)
56 PF12718 Tropomyosin_1: Tropom 27.3 1.4E+02 0.003 31.6 6.0 64 1029-1092 26-91 (143)
57 PF04977 DivIC: Septum formati 26.8 3.1E+02 0.0067 25.0 7.5 32 1033-1064 19-50 (80)
58 COG0326 HtpG Molecular chapero 26.7 54 0.0012 41.9 3.4 239 4-325 86-347 (623)
59 TIGR02894 DNA_bind_RsfA transc 26.2 2.6E+02 0.0056 30.8 7.7 39 1027-1065 107-145 (161)
60 COG3883 Uncharacterized protei 26.1 1.7E+02 0.0038 34.2 6.9 37 1029-1065 50-86 (265)
61 COG3883 Uncharacterized protei 26.0 2.1E+02 0.0046 33.5 7.5 13 1078-1090 84-96 (265)
62 COG2433 Uncharacterized conser 25.9 1.4E+02 0.0031 38.3 6.6 44 1028-1071 419-462 (652)
63 KOG2264 Exostosin EXT1L [Signa 25.8 1.4E+02 0.003 38.1 6.4 43 1027-1069 96-138 (907)
64 PF12718 Tropomyosin_1: Tropom 25.7 2.1E+02 0.0046 30.2 7.0 45 1025-1069 15-59 (143)
65 PF11932 DUF3450: Protein of u 24.6 2.5E+02 0.0055 31.6 7.8 11 1078-1088 88-98 (251)
66 PF04111 APG6: Autophagy prote 24.4 2.1E+02 0.0045 33.8 7.3 46 1022-1067 48-93 (314)
67 PRK09343 prefoldin subunit bet 24.2 1.8E+02 0.0038 29.9 5.9 42 1026-1067 73-114 (121)
68 PF07888 CALCOCO1: Calcium bin 24.2 5.3E+02 0.012 33.1 11.0 15 951-965 77-91 (546)
69 PRK13729 conjugal transfer pil 24.0 2.4E+02 0.0051 35.5 7.9 51 1031-1089 69-119 (475)
70 PF05377 FlaC_arch: Flagella a 23.8 2E+02 0.0043 26.7 5.4 37 1028-1064 4-40 (55)
71 PF07028 DUF1319: Protein of u 23.8 2.6E+02 0.0057 29.7 7.0 55 1027-1081 42-96 (126)
72 COG1579 Zn-ribbon protein, pos 23.4 1.8E+02 0.0038 33.6 6.3 23 1022-1044 57-79 (239)
73 KOG0995 Centromere-associated 23.1 1.9E+02 0.0041 37.0 6.8 34 1036-1069 285-318 (581)
74 PRK10884 SH3 domain-containing 22.6 2.8E+02 0.0061 31.1 7.5 16 1050-1065 137-152 (206)
75 PF10458 Val_tRNA-synt_C: Valy 22.6 76 0.0016 29.2 2.7 41 1042-1082 1-43 (66)
76 cd03698 eRF3_II_like eRF3_II_l 22.5 1.7E+02 0.0036 27.5 5.0 81 684-796 1-81 (83)
77 PF08580 KAR9: Yeast cortical 22.5 2.6E+02 0.0057 36.5 8.2 69 1021-1089 246-321 (683)
78 PF15079 DUF4546: Domain of un 22.5 2.8E+02 0.006 30.9 7.1 47 1320-1370 50-96 (205)
79 PF12777 MT: Microtubule-bindi 22.4 1.4E+02 0.0029 35.3 5.4 48 1022-1069 212-259 (344)
80 KOG1692 Putative cargo transpo 22.3 4.6E+02 0.0099 29.8 8.8 72 896-988 41-117 (201)
81 PF07851 TMPIT: TMPIT-like pro 22.1 3.6E+02 0.0078 32.5 8.6 54 1317-1370 4-57 (330)
82 PF07900 DUF1670: Protein of u 22.0 96 0.0021 35.3 3.8 73 789-886 6-98 (220)
83 TIGR03090 SASP_tlp small, acid 22.0 2.8E+02 0.006 27.0 6.2 54 1024-1085 8-65 (70)
84 TIGR02338 gimC_beta prefoldin, 21.8 1.9E+02 0.0042 28.9 5.5 32 1029-1060 72-103 (110)
85 PF09304 Cortex-I_coil: Cortex 21.7 2.7E+02 0.006 28.8 6.5 27 1043-1069 42-68 (107)
86 PRK13182 racA polar chromosome 21.6 1.6E+02 0.0035 32.3 5.3 56 1043-1098 90-149 (175)
87 COG3074 Uncharacterized protei 21.6 4E+02 0.0086 26.1 7.1 48 1321-1372 22-69 (79)
88 KOG0518 Actin-binding cytoskel 21.4 2.4E+03 0.051 29.8 19.4 282 675-973 605-974 (1113)
89 PF10186 Atg14: UV radiation r 21.4 4E+02 0.0087 29.7 8.5 47 1316-1362 62-108 (302)
90 COG1730 GIM5 Predicted prefold 21.2 1.5E+02 0.0032 31.9 4.8 42 1041-1090 90-131 (145)
91 PF10779 XhlA: Haemolysin XhlA 21.1 3E+02 0.0065 25.8 6.3 41 1028-1068 3-43 (71)
92 COG1196 Smc Chromosome segrega 20.5 3.1E+02 0.0068 37.5 8.7 43 1111-1160 588-632 (1163)
93 smart00787 Spc7 Spc7 kinetocho 20.3 2.6E+02 0.0056 33.2 7.0 12 945-956 56-67 (312)
94 KOG2264 Exostosin EXT1L [Signa 20.3 1.8E+02 0.0038 37.3 5.8 17 1122-1138 209-225 (907)
95 PF11559 ADIP: Afadin- and alp 20.3 3.8E+02 0.0083 27.9 7.5 36 1027-1062 55-90 (151)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.92 E-value=2e-24 Score=272.30 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=152.7
Q ss_pred HHHHHHHHHhhhhhhccccccc----ccccCCCCCCCCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHH
Q 000648 1078 EIIRRIKSIYQSAASVICCSTK----EFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAA 1153 (1373)
Q Consensus 1078 ei~keI~~~ensAA~i~c~l~~----r~~~~~~~S~~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~A 1153 (1373)
+..+++.+++...+.+....++ ++......+ .++||+|+|++|++|+++|..| |+.+|| ..+-+|||+|+.+|
T Consensus 478 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Gv~G~v~~li~v~~~y~~A-ie~alG-~~l~~vVV~~~~~a 554 (1163)
T COG1196 478 RLEKELSSLEARLDRLEAEQRASQGVRAVLEALES-GLPGVYGPVAELIKVKEKYETA-LEAALG-NRLQAVVVENEEVA 554 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-cCCCccchHHHhcCcChHHHHH-HHHHcc-cccCCeeeCChHHH
Confidence 4444555555555555554443 111011222 3899999999999999999988 455555 34569999999999
Q ss_pred HHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEecc
Q 000648 1154 FALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNM 1233 (1373)
Q Consensus 1154 K~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFLPLd~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNL 1233 (1373)
+.++.|| ++++.||+|||||+.|+|.... .+. ..+||+|+|+|+
T Consensus 555 ~~~i~~l------------------k~~~~gr~tflpl~~i~~~~~~----------------~~~--~~~g~~~~a~dl 598 (1163)
T COG1196 555 KKAIEFL------------------KENKAGRATFLPLDRIKPLRSL----------------KSD--AAPGFLGLASDL 598 (1163)
T ss_pred HHHHHHH------------------hhcCCCccccCchhhhcccccc----------------ccc--cccchhHHHHHH
Confidence 9999999 8888999999999999986541 011 189999999999
Q ss_pred ccccccccccccccCCCchHhHHHHhhcCeEEEechhcHHHHHHhcc-C----cEEEecCceeccCceEEeccCCCcccc
Q 000648 1234 VNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIR-H----GAVSLDGGILKEDGIISLGCGNPTICF 1308 (1373)
Q Consensus 1234 I~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTredM~~A~~~ak-~----giVTLDGeIIn~gGsmTGGs~~~~~kf 1308 (1373)
|+||++|. .+|+++||+|+|++ +|+.|+.++. + ++|||||++++++|+||||++.
T Consensus 599 i~~d~~~~------------~~~~~~l~~t~Iv~---~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~----- 658 (1163)
T COG1196 599 IDFDPKYE------------PAVRFVLGDTLVVD---DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN----- 658 (1163)
T ss_pred hcCCHHHH------------HHHHHHhCCeEEec---CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc-----
Confidence 99999999 99999999999999 9999998877 3 3999999999999999999654
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1309 PIVRTRISTQSIEALKQIEEKKLELDGIMQLIQE 1342 (1373)
Q Consensus 1309 p~s~L~rk~Ei~eLe~qlee~k~k~~klee~ik~ 1342 (1373)
+.+.+.+++++.++..++..+...+......++.
T Consensus 659 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 692 (1163)
T COG1196 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKS 692 (1163)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221344445656666655555555544444443
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.90 E-value=6.2e-23 Score=253.39 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=134.5
Q ss_pred CCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000648 1111 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1190 (1373)
Q Consensus 1111 l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFLP 1190 (1373)
.+|++|+|++|+.|+++|..| ++.+|| ..+.+|||+|.++|+.+|+|+ ++++.||+||||
T Consensus 520 ~~g~~g~l~dli~v~~~y~~A-ie~~lg-~~l~~ivv~~~~~a~~~i~~l------------------~~~~~gr~tflp 579 (1164)
T TIGR02169 520 IQGVHGTVAQLGSVGERYATA-IEVAAG-NRLNNVVVEDDAVAKEAIELL------------------KRRKAGRATFLP 579 (1164)
T ss_pred CCCceecHHHhcCcCHHHHHH-HHHHhh-hhhCCEEECCHHHHHHHHHHH------------------HhcCCCCeeecc
Confidence 589999999999999999988 566666 346699999999999999999 777799999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEeccccccccccccccccCCCchHhHHHHhhcCeEEEechh
Q 000648 1191 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1270 (1373)
Q Consensus 1191 Ld~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTre 1270 (1373)
|+.|++... . .....++|++|+|.++|++|++|. .+++++||+++|++
T Consensus 580 l~~~~~~~~--~---------------~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~~--- 627 (1164)
T TIGR02169 580 LNKMRDERR--D---------------LSILSEDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVVE--- 627 (1164)
T ss_pred HhhcCCCCC--C---------------cccccCCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEEc---
Confidence 999986321 0 011235789999999999999999 89999999999999
Q ss_pred cHHHHHHhcc-CcEEEecCceeccCceEEeccCCCccccccccccc--chHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1271 DMIEAHTCIR-HGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRI--STQSIEALKQIEEKKLELDGIMQL 1339 (1373)
Q Consensus 1271 dM~~A~~~ak-~giVTLDGeIIn~gGsmTGGs~~~~~kfp~s~L~r--k~Ei~eLe~qlee~k~k~~klee~ 1339 (1373)
+++.|..+++ .++|||||++++++|+||||+.. ....+++.+ ..++.++..++++++.++..+.+.
T Consensus 628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~~---~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~ 696 (1164)
T TIGR02169 628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRA---PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE 696 (1164)
T ss_pred CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCCC---CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999885 44999999999999999999732 111123333 345555555555554444444433
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8e-19 Score=214.46 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=132.0
Q ss_pred CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFL 1189 (1373)
.++|++|-.+|||.+|+.|-.|+ |. ++ ..+-+|||+|.++|+.+|.|| ++++.||+||+
T Consensus 614 ~i~Gf~GRLGDLg~Id~kYDvAI-sT-ac-~~LdyiVVdt~e~aq~cI~fl------------------~~~nLgraTFi 672 (1293)
T KOG0996|consen 614 RIPGFYGRLGDLGAIDEKYDVAI-ST-AC-ARLDYIVVDTIETAQECINFL------------------KKNNLGRATFI 672 (1293)
T ss_pred CCCccccccccccccchHHHHHH-HH-hc-cccceEEeccHHHHHHHHHHH------------------HHcCCCceeEE
Confidence 68999999999999999999994 44 22 123399999999999999999 78889999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEecccccc-ccccccccccCCCchHhHHHHhhcCeEEEec
Q 000648 1190 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1268 (1373)
Q Consensus 1190 PLd~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD-~k~~~~~T~~g~GLRetLfy~LFGrt~VyeT 1268 (1373)
+||.|+-...... ++|.+... | ...+||+++ +++. +.||++|++|+|++
T Consensus 673 ~LDki~~~~~~l~--~i~tpenv--P-------------RLfDLv~~~d~~~r------------~aFYfaLrdtLV~d- 722 (1293)
T KOG0996|consen 673 ILDKIKDHQKKLA--PITTPENV--P-------------RLFDLVKCKDEKFR------------PAFYFALRDTLVAD- 722 (1293)
T ss_pred ehHhhhhhhhccC--CCCCCCCc--c-------------hHhhhhccCCHHHH------------HHHHHHHhhhhhhc-
Confidence 9999994332211 12211111 1 345899997 9998 89999999999999
Q ss_pred hhcHHHHHHhcc-----CcEEEecCceeccCceEEeccCCCc---ccccccccccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1269 RKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLGCGNPT---ICFPIVRTRIS-TQSIEALKQIEEKKLELDGIMQL 1339 (1373)
Q Consensus 1269 redM~~A~~~ak-----~giVTLDGeIIn~gGsmTGGs~~~~---~kfp~s~L~rk-~Ei~eLe~qlee~k~k~~klee~ 1339 (1373)
++++|-+++. +++|||||.+|+.+|+||||...+. ...+.....-+ .....+++++..+....+.+.++
T Consensus 723 --~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~ 800 (1293)
T KOG0996|consen 723 --NLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQ 800 (1293)
T ss_pred --CHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 2299999999999999999964311 11222122222 36667777776666666655555
Q ss_pred H
Q 000648 1340 I 1340 (1373)
Q Consensus 1340 i 1340 (1373)
.
T Consensus 801 ~ 801 (1293)
T KOG0996|consen 801 L 801 (1293)
T ss_pred H
Confidence 4
No 4
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.9e-18 Score=203.82 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=134.0
Q ss_pred CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFL 1189 (1373)
...|++|+|.+|+.||+.+.+|+ |+.|...+.+|||+|++.|..+..-+ ++-+.||+||+
T Consensus 520 k~ngv~G~v~eL~~v~~~f~tav--EvtaGNsLF~iVVdndevATkIl~~~------------------n~m~~GrVTF~ 579 (1200)
T KOG0964|consen 520 KPNGVFGTVYELIKVPNKFKTAV--EVTAGNSLFNIVVDNDEVATKILRKL------------------NKMKGGRVTFM 579 (1200)
T ss_pred cccccceehhhhhcCCHHHHhHH--hhhcccceEEEEecccHHHHHHHHHH------------------HhccCCeeEEe
Confidence 45899999999999999999995 66666667799999999999998888 67778999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEeccccccccccccccccCCCchHhHHHHhhcCeEEEech
Q 000648 1190 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1269 (1373)
Q Consensus 1190 PLd~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTr 1269 (1373)
||+.|+++...++ .-++..+ ...-++|+|+|. .+|.++||+|+|+.
T Consensus 580 PLNrl~~r~v~yp-------------~~sdaiP-------li~kl~y~p~fd------------ka~k~Vfgktivcr-- 625 (1200)
T KOG0964|consen 580 PLNRLKARDVEYP-------------KDSDAIP-------LISKLRYEPQFD------------KALKHVFGKTIVCR-- 625 (1200)
T ss_pred ecccCchhhccCC-------------CCCCccc-------hHHHhCcchhhH------------HHHHHHhCceEEec--
Confidence 9999999654322 1112111 235588999999 99999999999999
Q ss_pred hcHHHHHHhcc-Cc--EEEecCceeccCceEEeccCCCccccccccccc-------chHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1270 KDMIEAHTCIR-HG--AVSLDGGILKEDGIISLGCGNPTICFPIVRTRI-------STQSIEALKQIEEKKLELDGIMQL 1339 (1373)
Q Consensus 1270 edM~~A~~~ak-~g--iVTLDGeIIn~gGsmTGGs~~~~~kfp~s~L~r-------k~Ei~eLe~qlee~k~k~~klee~ 1339 (1373)
+|..|.+.|+ +. .|||||+.+..-|+||||+.. . ..+.|+- .-++.+|++.+++.+.+++.+.++
T Consensus 626 -dl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D---~-krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~ 700 (1200)
T KOG0964|consen 626 -DLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED---Q-KRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQK 700 (1200)
T ss_pred -cHHHHHHHHHhcCCCeEEeccceecccCCccccchh---h-hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 55 899999999999999999974 1 1221111 225666666666666555555554
Q ss_pred HHH
Q 000648 1340 IQE 1342 (1373)
Q Consensus 1340 ik~ 1342 (1373)
+.+
T Consensus 701 i~q 703 (1200)
T KOG0964|consen 701 IDQ 703 (1200)
T ss_pred HHH
Confidence 444
No 5
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.4e-17 Score=195.78 Aligned_cols=272 Identities=18% Similarity=0.224 Sum_probs=184.7
Q ss_pred cchhhHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHH--------------HHHHhhcccccc--cCCHHHHHH
Q 000648 1018 HMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEV--------------LSKLQVSVEPYS--LLTKEEIIR 1081 (1373)
Q Consensus 1018 ~~~~~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~--------------i~dLq~~L~~~~--~st~Eei~k 1081 (1373)
+|.+.=....+++..++....++.+++.+|+..+.++..+... +++|+..|.++. -...|...+
T Consensus 400 ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q 479 (1174)
T KOG0933|consen 400 QLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQ 479 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 4445445556777888888899999999999888886555444 333333333221 111222222
Q ss_pred -------HHHHHhhhhhhcccccccccccC-CCCCC-CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHH
Q 000648 1082 -------RIKSIYQSAASVICCSTKEFLCS-KPRSN-FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEA 1152 (1373)
Q Consensus 1082 -------eI~~~ensAA~i~c~l~~r~~~~-~~~S~-~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~ 1152 (1373)
.|-++.+..-++.+++.+-.-.+ .|..+ .-..|.|+||.|++|.+....-+|...||. .+-+|||+|++.
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGg-rLynvVv~te~t 558 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGG-RLYNVVVDTEDT 558 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcC-cceeEEeechHH
Confidence 22233333333333332111111 13333 456799999999999888877777777775 577999999999
Q ss_pred HHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEecCCCCCCCCCCCCCCccccccCCCCCCCCC-CCCCCeEEEEe
Q 000648 1153 AFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKG-NIPAGFVGYAV 1231 (1373)
Q Consensus 1153 AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFLPLd~IRP~~~~~~~~dPQrkL~L~~P~L~~g-~~~~GFIGyAV 1231 (1373)
++.|.. -| +.-.|+|.|||+.|+.+... |+. ++.. ...++=+-.|+
T Consensus 559 gkqLLq---~g-----------------~l~rRvTiIPLnKI~s~~~s-----~~v--------~~~ak~v~~~~v~~al 605 (1174)
T KOG0933|consen 559 GKQLLQ---RG-----------------NLRRRVTIIPLNKIQSFVLS-----PNV--------LQAAKNVGNDNVELAL 605 (1174)
T ss_pred HHHHhh---cc-----------------cccceeEEEechhhhhccCC-----HhH--------HHHHHHhcCchHHHHH
Confidence 998643 22 23578999999999987651 111 1110 12345566899
Q ss_pred ccccccccccccccccCCCchHhHHHHhhcCeEEEechhcHHHHHHhccCc-----EEEecCceeccCceEEeccCCCcc
Q 000648 1232 NMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGNPTI 1306 (1373)
Q Consensus 1232 NLI~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTredM~~A~~~ak~g-----iVTLDGeIIn~gGsmTGGs~~~~~ 1306 (1373)
+||.||+.+. ++..++||.+.|++ +++.|..++=+. .|||||+++.|.|.+|||+++
T Consensus 606 ~Li~yd~~l~------------~amefvFG~tlVc~---~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~--- 667 (1174)
T KOG0933|consen 606 SLIGYDDELK------------KAMEFVFGSTLVCD---SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRS--- 667 (1174)
T ss_pred HHhcCCHHHH------------HHHHHHhCceEEec---CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCC---
Confidence 9999999999 99999999999999 999999876543 699999999999999999976
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1307 CFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQE 1342 (1373)
Q Consensus 1307 kfp~s~L~rk~Ei~eLe~qlee~k~k~~klee~ik~ 1342 (1373)
++.++|..-..+.+++.+++..+.+++.++++++.
T Consensus 668 -~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~ 702 (1174)
T KOG0933|consen 668 -KGADLLRQLQKLKQAQKELRAIQKELEALERELKS 702 (1174)
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666677777777777777766665
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.9e-15 Score=184.65 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=121.4
Q ss_pred CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFL 1189 (1373)
..+||+|.|.+|+.-.-++...+++..||. .|-+|||+|+.+|+.+|.|+ |..+.|-.|||
T Consensus 500 ~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~yl------------------Keqr~~~~TFl 560 (1141)
T KOG0018|consen 500 LFPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYL------------------KEQRLEPMTFL 560 (1141)
T ss_pred hCCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHH------------------HHhccCCcccc
Confidence 779999999999998866666668999996 68899999999999999999 77779999999
Q ss_pred ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEeccccccccccccccccCCCchHhHHHHhhcCeEEEech
Q 000648 1190 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1269 (1373)
Q Consensus 1190 PLd~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTr 1269 (1373)
||++|+-...+ -.|+ .+.| +-.|+|.|+|+++|+ .+..+++|+++|++
T Consensus 561 Pld~i~v~~~~--------------e~lr---~~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcd-- 608 (1141)
T KOG0018|consen 561 PLDSIRVKPVN--------------EKLR---ELGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCD-- 608 (1141)
T ss_pred chhhhhcCccc--------------cccc---CcCC-eEEEEEecCCCHHHH------------HHHHHHhccceecC--
Confidence 99999964321 1233 3556 889999999999999 89999999999999
Q ss_pred hcHHHHHHhcc-----CcEEEecCceeccCceEEeccCC
Q 000648 1270 KDMIEAHTCIR-----HGAVSLDGGILKEDGIISLGCGN 1303 (1373)
Q Consensus 1270 edM~~A~~~ak-----~giVTLDGeIIn~gGsmTGGs~~ 1303 (1373)
++..|+.++= ..+|||||-+|..+|.||||+..
T Consensus 609 -s~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~ 646 (1141)
T KOG0018|consen 609 -SVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSG 646 (1141)
T ss_pred -CHHHHHHhhhcccccceEEEeeeeEEeccceecCCccC
Confidence 7777887754 22999999999999999999864
No 7
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.55 E-value=2.6e-14 Score=135.49 Aligned_cols=118 Identities=24% Similarity=0.259 Sum_probs=99.7
Q ss_pred CCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEec
Q 000648 1112 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL 1191 (1373)
Q Consensus 1112 ~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFLPL 1191 (1373)
+||+|.|++|++|+++|+.| ++.+|| ..+.+|||+|.++|+.+++++ ++++.||+||+||
T Consensus 2 ~gv~G~l~dli~v~~~~~~A-ve~~LG-~~l~~iVV~~~~~a~~~i~~l------------------~~~~~gr~~~i~l 61 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYEKA-VEAALG-GRLQAIVVEDEETAKKIIEFL------------------KENKLGRATFIPL 61 (120)
T ss_dssp TTEEEEGGGSEEESGGGHHH-HHHHHG-GGGGSEEESSHHHHHHHHHHH------------------HHTTSCEEEEEET
T ss_pred CCeeeeHHhceecCHHHHHH-HHHHHH-HhhceEEECcHHHHHHHHHHH------------------hhccCCeEEEEEC
Confidence 69999999999998888876 677777 467899999999999999999 5666999999999
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEeccccc-cccccccccccCCCchHhHHHHhhcCeEEEechh
Q 000648 1192 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1270 (1373)
Q Consensus 1192 d~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~l-D~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTre 1270 (1373)
+.+++...... ... ...+|..+.+.++|++ |+++. .++.+|||++.|++
T Consensus 62 ~~~~~~~~~~~--------------~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~--- 111 (120)
T PF06470_consen 62 DKIRSRSSASS--------------ADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD--- 111 (120)
T ss_dssp TTTGGGTTSCC--------------CGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred ccccccccccc--------------hhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence 99987543110 000 1167899999999999 88998 89999999999999
Q ss_pred cHHHHHHhc
Q 000648 1271 DMIEAHTCI 1279 (1373)
Q Consensus 1271 dM~~A~~~a 1279 (1373)
|++.|+.++
T Consensus 112 ~l~~A~~la 120 (120)
T PF06470_consen 112 DLEEARKLA 120 (120)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHhC
Confidence 999999875
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.32 E-value=1.1e-10 Score=144.94 Aligned_cols=143 Identities=22% Similarity=0.271 Sum_probs=110.6
Q ss_pred CCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEEe
Q 000648 1111 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1190 (1373)
Q Consensus 1111 l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFLP 1190 (1373)
++|++|.+++|+.++++|..++ ...+| ..+-+|||++.+.|..++.++ +....|+.+|+|
T Consensus 518 ~~~~~g~~~~li~~~~~~~~a~-~~~~g-~~~~~ivv~~~~~a~~~~~~l------------------~~~~~g~~~~l~ 577 (1179)
T TIGR02168 518 LSGILGVLSELISVDEGYEAAI-EAALG-GRLQAVVVENLNAAKKAIAFL------------------KQNELGRVTFLP 577 (1179)
T ss_pred cCCCccchhceeeeChhHHHHH-HHHHH-HHhcCeEECCHHHHHHHHHHh------------------cccCCCcEEEee
Confidence 4789999999999988877773 44444 455579999999999999998 666799999999
Q ss_pred cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEeccccccccccccccccCCCchHhHHHHhhcCeEEEechh
Q 000648 1191 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1270 (1373)
Q Consensus 1191 Ld~IRP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LFGrt~VyeTre 1270 (1373)
++.++.... +. +..+......|.++++.++++|++.+. .++.+.+|.+.++.
T Consensus 578 l~~i~~~~~----~~---------~~~~~~~~~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~ivt--- 629 (1179)
T TIGR02168 578 LDSIKGTEI----QG---------NDREILKNIEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVVD--- 629 (1179)
T ss_pred ccccccccc----cc---------cchhhccccCchhHHHHHHhcccHhHH------------HHHHHHhCCceEeC---
Confidence 999975321 00 000112345689999999999999888 77788899988878
Q ss_pred cHHHHHHhcc----Cc-EEEecCceeccCceEEecc
Q 000648 1271 DMIEAHTCIR----HG-AVSLDGGILKEDGIISLGC 1301 (1373)
Q Consensus 1271 dM~~A~~~ak----~g-iVTLDGeIIn~gGsmTGGs 1301 (1373)
+|+.|..++. .| +|+++|+++..||++++|.
T Consensus 630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~ 665 (1179)
T TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS 665 (1179)
T ss_pred CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCc
Confidence 8889998774 44 8999999888888887775
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.90 E-value=8.4e-05 Score=93.50 Aligned_cols=49 Identities=20% Similarity=0.053 Sum_probs=32.3
Q ss_pred hHHHHhhcCeEEEechhcHHHHHHh-----ccC-cEEE-------------ecCceeccCceE--EeccC
Q 000648 1254 TLLYRLFGKLQVYKTRKDMIEAHTC-----IRH-GAVS-------------LDGGILKEDGII--SLGCG 1302 (1373)
Q Consensus 1254 tLfy~LFGrt~VyeTredM~~A~~~-----ak~-giVT-------------LDGeIIn~gGsm--TGGs~ 1302 (1373)
.++..++|.+.++.+...++.|+.. ... .+|| +||++++++|.+ +||+.
T Consensus 592 ~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~ 661 (1179)
T TIGR02168 592 EILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVI 661 (1179)
T ss_pred hhccccCchhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceE
Confidence 3466678888887755553334432 112 3899 799999999954 47764
No 10
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.56 E-value=0.0046 Score=79.08 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=40.8
Q ss_pred CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhh
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1160 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YL 1160 (1373)
+..-.+|+++-.+++.++..+.++++.||- .+-+-||.|..++..|-..+
T Consensus 491 f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~ 540 (1074)
T KOG0250|consen 491 FQTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILRAIM 540 (1074)
T ss_pred CCCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHH
Confidence 456689999999999999888888888883 33388999998888877766
No 11
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.25 E-value=8.5e-05 Score=74.24 Aligned_cols=89 Identities=25% Similarity=0.370 Sum_probs=50.8
Q ss_pred chhhhhHhhhcccccccccccccCCCCCCCccccccccCCCcceeeeecCceEEEEeeccccceeEEEEeeHHHHhhcCc
Q 000648 5 DENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSD 84 (1373)
Q Consensus 5 ~~~sl~kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~sk~V~~l~lsr~~L~~~s~ 84 (1373)
+.+.|.+|.+||.|..+..+.. ..+|+||+|.+.|+|.+|+++.|.||+......++ ++++.+...
T Consensus 46 ~~~~l~~~~~~g~s~k~~~~~~----------~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~--~~~~~~~~~-- 111 (137)
T PF13589_consen 46 SREDLESFFRIGRSSKKSEKDR----------QSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYT--IDYDWIEKD-- 111 (137)
T ss_dssp -HHHHHHHTTCHHTHHHHHHHG----------GGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEE--EEEEEETT---
T ss_pred CHHHHHHhccccCCCCCchhhh----------hcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEE--EEEeccccc--
Confidence 4567889999999988744322 22899999999999999999999999999998666 555555332
Q ss_pred cCceeeecceecCC--ChhhhccCCCC
Q 000648 85 AELTWRTNGGIRFP--SKDEIADSPHG 109 (1373)
Q Consensus 85 ~~~~WK~~g~~R~p--s~~E~~~sphg 109 (1373)
..|.++..-.+. ...+..++|||
T Consensus 112 --~~~~i~~~~~~~~~~~~~~~~~~~G 136 (137)
T PF13589_consen 112 --ESWDIPERESEEIQNESELDKSEHG 136 (137)
T ss_dssp ---------------------------
T ss_pred --ccccccccccccccccccccccccC
Confidence 346655443333 45567778898
No 12
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.70 E-value=0.59 Score=63.43 Aligned_cols=47 Identities=15% Similarity=0.059 Sum_probs=40.2
Q ss_pred CCCCeeeeccccee-eccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhh
Q 000648 1110 FMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE 1160 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~-V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YL 1160 (1373)
.++||+ |++|+. |+.+|..+ ++.++|- .+-+|||++.++|+.+|.+|
T Consensus 681 ~~~Gvl--vsel~~~v~~~~~~~-~~A~lg~-~~~~iVv~d~~~A~~ai~~L 728 (1486)
T PRK04863 681 RFGGVL--LSEIYDDVSLEDAPY-FSALYGP-ARHAIVVPDLSDAAEQLAGL 728 (1486)
T ss_pred hcCCee--hhHhhhccCcchHHH-HHHHHHh-hhCeEEeCCHHHHHHHHHhc
Confidence 578999 999999 99999988 4555553 46699999999999999999
No 13
>PRK05218 heat shock protein 90; Provisional
Probab=86.58 E-value=5 Score=50.43 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=42.8
Q ss_pred cCCceeEEeccccccccccccccchhhhhhcchhhHHHHHHhhheeEEeecCCCCCCCCCcccccccchHHHHHH
Q 000648 250 TRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTPSKTDLAHQNLYTIALK 324 (1373)
Q Consensus 250 ~f~rv~vrw~GRLlpea~w~~lpFM~~~~~~g~k~~il~~~~~RVK~~i~~dsgF~~T~sK~~L~~~~pft~aL~ 324 (1373)
+-.++.++-|||++.+ .++ .+|=+|.+=|||.|+.+ ..++|-|.=.|- +|+....++
T Consensus 282 ~~~~~~lyvn~v~I~d---------------~~~-~lLP~wl~Fv~GVVDs~-dLplnvSRE~lq-~~~~l~~i~ 338 (613)
T PRK05218 282 RKGGLKLYVKRVFIMD---------------DAE-ELLPEYLRFVKGVIDSE-DLPLNVSREILQ-EDRVVKKIR 338 (613)
T ss_pred ccccEEEEECcEEeeC---------------chh-hhchHHHhheEEEeecC-CCCCccCHHHHh-cCHHHHHHH
Confidence 4468999999999965 233 46669999999999875 699999998664 455555554
No 14
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.02 E-value=14 Score=48.83 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=65.9
Q ss_pred CCCCeeeecccceeeccchhhhHHHhhhhhchhceEEeccHHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCceEEE
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL~IVvrs~e~AK~li~YLkeg~Id~~~~lh~~~~s~kr~~~GR~TFL 1189 (1373)
+-..|+|++.-=+.|++...++.|+..+|..+.-+.||.++++-..+.+-. +.+ -.
T Consensus 446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i------------------~d~------k~ 501 (1072)
T KOG0979|consen 446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKI------------------KDE------KW 501 (1072)
T ss_pred hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHh------------------hhc------ce
Confidence 567899998888889898899999999999998899999998766554444 111 12
Q ss_pred ecCCC---CCCCCCCCCCCccccccCCCCCCCCCCCCCCeEEEEecccccccccc
Q 000648 1190 CLEGI---RPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHM 1241 (1373)
Q Consensus 1190 PLd~I---RP~~~~~~~~dPQrkL~L~~P~L~~g~~~~GFIGyAVNLI~lD~k~~ 1241 (1373)
|++++ .+... .. ++ .| |..++-...-||-||..|+++.+..-.
T Consensus 502 ~vn~~~~~~~~~k-~~-d~------~p-~~sre~l~~lGF~gyls~f~~~p~~vm 547 (1072)
T KOG0979|consen 502 RVNASEVIPREKK-YA-DK------IP-AQSREELKRLGFEGYLSNFIEAPEPVM 547 (1072)
T ss_pred eeeceeccccccc-cc-cC------CC-ccCHHHHHhcChHHHhhhhhcCcHHHH
Confidence 33322 21111 00 10 11 222333457899999999999987654
No 15
>PTZ00130 heat shock protein 90; Provisional
Probab=70.80 E-value=3.6 Score=53.19 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=57.1
Q ss_pred chhhhhHhhhcccccccccccccCCCCCCCccccccccCCCcceeeeecCceEEEEeeccccceeEEEEeeHHHHhhcCc
Q 000648 5 DENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSD 84 (1373)
Q Consensus 5 ~~~sl~kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~sk~V~~l~lsr~~L~~~s~ 84 (1373)
.++-+.+|||++-|-.+....+-.+++. ...++|.||+| -.+||-++.+|+|.||.-+.+- +. |.++
T Consensus 148 ~eEl~~nLgTIA~Sgt~~F~~~l~~~~~--~~~lIGQFGVG-FYSaFmVAdkV~V~Trs~~~~~----~~----W~s~-- 214 (814)
T PTZ00130 148 KEDLINNLGTIAKSGTSNFLEAISKSGG--DMSLIGQFGVG-FYSAFLVADKVIVYTKNNNDEQ----YI----WEST-- 214 (814)
T ss_pred HHHHHHHhhhhcccccHHHHHHhhccCC--Ccccccccccc-hhheeeecCEEEEEEcCCCCce----EE----EEEC--
Confidence 3455789999998876665433211111 25799999996 6888999999999999654331 11 4333
Q ss_pred cCceeeecceecCCChhhhccCCCCCeeEEEEe
Q 000648 85 AELTWRTNGGIRFPSKDEIADSPHGSFTKVEIW 117 (1373)
Q Consensus 85 ~~~~WK~~g~~R~ps~~E~~~sphgsFTkV~I~ 117 (1373)
++.+|.+.-.-|. ...++| |+|++.
T Consensus 215 g~g~y~I~e~~~~------~~~~rG--T~I~Lh 239 (814)
T PTZ00130 215 ADAKFTIYKDPRG------STLKRG--TRISLH 239 (814)
T ss_pred CCCcEEEEECCCC------CCCCCC--cEEEEE
Confidence 5666655432221 112366 788875
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.03 E-value=21 Score=37.71 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhhccccc
Q 000648 1031 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCS 1097 (1373)
Q Consensus 1031 ~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA~i~c~l 1097 (1373)
+++..+..+|.++.+++..|+.+...++.++..|...+- -+++..+|.+++.+...+...|
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t------~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT------NEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544443332 3455555555544444433333
No 17
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=60.06 E-value=14 Score=35.74 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCeEEEEeccccccccccccccccCCCchHhHHHHhhcC---eEEEechhcHHHHHHhcc---Cc---EEEecC
Q 000648 1224 AGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGK---LQVYKTRKDMIEAHTCIR---HG---AVSLDG 1288 (1373)
Q Consensus 1224 ~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LFGr---t~VyeTredM~~A~~~ak---~g---iVTLDG 1288 (1373)
+|++|.-.+||+.+++|+ +++..+||. .+|++|.++...++...+ .+ ++.||.
T Consensus 2 ~gv~G~l~dli~v~~~~~------------~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~ 63 (120)
T PF06470_consen 2 PGVLGRLADLIEVDPKYE------------KAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDK 63 (120)
T ss_dssp TTEEEEGGGSEEESGGGH------------HHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTT
T ss_pred CCeeeeHHhceecCHHHH------------HHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECcc
Confidence 699999999999999999 899999885 688896655555555544 23 566655
No 18
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=59.40 E-value=8.7 Score=49.26 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=39.9
Q ss_pred chhhhhHhhhcccccccccccccCCCCCCCccccccccCCCcceeeeecCceEEEEeecc
Q 000648 5 DENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTK 64 (1373)
Q Consensus 5 ~~~sl~kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk 64 (1373)
.++-..+|||+|.|-.+....+..++ +. ..++|.||+| -.++|-++.+|+|.||..
T Consensus 85 ~edl~~~LgtIa~SGt~~f~~~~~~~-~~--~~~iGqFGvG-fyS~Fmvad~V~V~Srs~ 140 (701)
T PTZ00272 85 KADLVNNLGTIARSGTKAFMEALEAG-GD--MSMIGQFGVG-FYSAYLVADRVTVTSKNN 140 (701)
T ss_pred HHHHHHHhhhhhhcchHHHHHHhhcc-CC--ccccCCCCcc-eEEEEEeccEEEEEEecC
Confidence 44557789999988665443222111 11 5699999986 678899999999999965
No 19
>PRK02119 hypothetical protein; Provisional
Probab=56.54 E-value=33 Score=32.56 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHh
Q 000648 1025 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1087 (1373)
Q Consensus 1025 ~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~e 1087 (1373)
....+++.|..|-.++...|+-+..|+....+-..+|..|+..|. .+..++++.+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~--------~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR--------YMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Confidence 345678889999999999999999999998888888888888777 6777776664
No 20
>PRK04325 hypothetical protein; Provisional
Probab=54.77 E-value=35 Score=32.44 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=43.5
Q ss_pred hHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhh
Q 000648 1026 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ 1088 (1373)
Q Consensus 1026 ~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~en 1088 (1373)
...+++.|..|-.++...|+-+..|+..+.+-..+|.+|+..|. .+.+++++.+.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~--------~L~~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR--------LLYQQMRDANP 58 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhcc
Confidence 45677888888888888899999988888888888888887777 66667766643
No 21
>PRK11637 AmiB activator; Provisional
Probab=53.24 E-value=26 Score=41.95 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.8
Q ss_pred cCceeccCceE
Q 000648 1287 DGGILKEDGII 1297 (1373)
Q Consensus 1287 DGeIIn~gGsm 1297 (1373)
.|+.|.+|=.|
T Consensus 385 ~G~~V~~G~~i 395 (428)
T PRK11637 385 VGAQVRAGQPI 395 (428)
T ss_pred CcCEECCCCeE
Confidence 56666666555
No 22
>PRK14083 HSP90 family protein; Provisional
Probab=53.09 E-value=16 Score=46.27 Aligned_cols=224 Identities=18% Similarity=0.217 Sum_probs=120.1
Q ss_pred hhhh-HhhhcccccccccccccCCCCCCCccccccccCCCcceeeeecCceEEEEeeccccceeEEEEeeHHHHhhcCcc
Q 000648 7 NSIV-KWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCSDA 85 (1373)
Q Consensus 7 ~sl~-kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~sk~V~~l~lsr~~L~~~s~~ 85 (1373)
+.++ .|+++|.|-.+... . |.+ ...++|.||+| -.|+|.++.+|+|.||..+....+. |... +
T Consensus 77 eel~~~l~~ig~S~k~~~~---~-~~~--~~~~IG~FGIG-f~S~F~vad~v~V~Tr~~~~~~~~~-------W~~~--~ 140 (601)
T PRK14083 77 EEVHEFLATIGRSSKRDEN---L-GFA--RNDFLGQFGIG-LLSCFLVADEIVVVSRSAKDGPAVE-------WRGK--A 140 (601)
T ss_pred HHHHHHHhhhccchhhhhh---h-ccc--ccccccccccc-eEEEEEecCEEEEEeccCCCCceEE-------EEEC--C
Confidence 4455 49999988766543 1 221 25689999996 6788999999999999864211111 1111 1
Q ss_pred CceeeecceecC-CChhhhccCCCCCeeEEEEeccc-c----cccccccccc-cccceeeeeeeecCCCCCCCcCCCeee
Q 000648 86 ELTWRTNGGIRF-PSKDEIADSPHGSFTKVEIWEPK-L----KSLDVKPLGC-KLKDIYFPYIQCDEISSTGKTTRPIEF 158 (1373)
Q Consensus 86 ~~~WK~~g~~R~-ps~~E~~~sphgsFTkV~I~~~k-~----~~~~i~~L~~-~LkdIY~~YIq~d~~~~~gk~~~pvef 158 (1373)
+.++. +.. |+. + .+.-|+|++.--+ . +.+.+..|-+ -..+|-|| |..++ .. =
T Consensus 141 ~g~y~----i~~~~~~---~---~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~p-I~l~~-----~~-----~ 199 (601)
T PRK14083 141 DGTYS----VRKLETE---R---AEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVP-IRVEG-----EK-----G 199 (601)
T ss_pred CCceE----EEeCCCC---C---CCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCC-cccCC-----ce-----e
Confidence 22221 111 111 1 2455899887322 1 1233333333 33444454 22111 00 0
Q ss_pred eecCc-ccccccCCeeee-eec------cccCCCc-eEEEEEeeecccccccCCCCCCcccccccEEEEEEe-ecccccc
Q 000648 159 QVNGI-DLAEVAGGEVAI-TNM------HSCNGPD-FILQLHFSLRQASATTNSPGSRPSKEANARLKFVYF-PVTEEGE 228 (1373)
Q Consensus 159 ~~n~~-dL~ei~gg~~a~-~n~------~s~~g~~-Fvf~l~~~~~~~~~~~~~~~~~~~~~~nA~v~~~YF-P~~~gkE 228 (1373)
++|.. -||.-+-.+++. ... +.-+..| ++++++. ++ .+. -..-|| |...-
T Consensus 200 ~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~~~Pl~~ih~~~---------------e~--~~~-~~~Ly~iP~~~~-- 259 (601)
T PRK14083 200 GVNETPPPWTRDYPDPETRREALLAYGEELLGFTPLDVIPLDV---------------PS--GGL-EGVAYVLPYAVS-- 259 (601)
T ss_pred eecCCCCCccCCccccCccHHHHHHHHHHhcCCCchheeeecc---------------cc--hhh-eEEEEecCCCCC--
Confidence 34443 355544444320 000 1112223 3655555 32 222 234554 65331
Q ss_pred chHHHHHHHHhcccccccccccCCceeEEeccccccccccccccchhhhhhcchhhHHHHHHhhheeEEeecCCCCCCCC
Q 000648 229 SIDIIMNKLISEGCVAAANYDTRSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDTDAGFNPTP 308 (1373)
Q Consensus 229 sl~~~~~~L~~~~~~~~e~~~~f~rv~vrw~GRLlpea~w~~lpFM~~~~~~g~k~~il~~~~~RVK~~i~~dsgF~~T~ 308 (1373)
++.-+++.+.-+.=||.| .++ .+|=.|.+=|||.||.+ ..++|-
T Consensus 260 -------------------~~~~~~v~LY~~rVfI~d---------------~~~-~lLP~wl~FvrGVVDS~-DLpLNv 303 (601)
T PRK14083 260 -------------------PAARRKHRVYLKRMLLSE---------------EAE-NLLPDWAFFVRCVVNTD-ELRPTA 303 (601)
T ss_pred -------------------ccccCceEEEeeeeEeec---------------chh-hhhHHHHHHheeeeecC-CCCCcc
Confidence 112457888888777754 344 45559999999999975 589999
Q ss_pred CcccccccchHHHHHH
Q 000648 309 SKTDLAHQNLYTIALK 324 (1373)
Q Consensus 309 sK~~L~~~~pft~aL~ 324 (1373)
|.=.|- +|+....++
T Consensus 304 SRE~LQ-~~~~l~~ir 318 (601)
T PRK14083 304 SREALY-EDDALAAVR 318 (601)
T ss_pred CHHHHc-cCHHHHHHH
Confidence 998776 667767766
No 23
>PRK00295 hypothetical protein; Provisional
Probab=52.47 E-value=46 Score=31.22 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHh
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1087 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~e 1087 (1373)
+++.|..|-.++...|+-+..|+....+-..+|..|+..|. .+.+++++.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA--------ALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhh
Confidence 56778888888888899999999888888888888887777 7777777765
No 24
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.41 E-value=40 Score=37.10 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=48.5
Q ss_pred chhhHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhh
Q 000648 1019 MVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAAS 1092 (1373)
Q Consensus 1019 ~~~~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA~ 1092 (1373)
|+++-+...++.+..+.+..++.+++.+.+.+.+++.+++..|..||.....+ ...+|+..++|..++..+..
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~-~~~ke~~~~ei~~lks~~~~ 170 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL-KEKKEAKDKEISRLKSEAEA 170 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888888888888887777777777777777777777654311 12234455555555444433
No 25
>PRK11637 AmiB activator; Provisional
Probab=51.25 E-value=32 Score=41.21 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=7.0
Q ss_pred HHHHHhhhhhHhhHHHHHH
Q 000648 1030 ESEVRNYGLCIGRHEKALK 1048 (1373)
Q Consensus 1030 q~~l~~lg~kIk~~E~~lk 1048 (1373)
+++++++-.+|++.+.+++
T Consensus 46 ~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 26
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.59 E-value=56 Score=30.94 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhh
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 1089 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ens 1089 (1373)
..+++.|..|-.++...|+-+..|+....+-..+|..|+..|. .+..++++.+.+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~--------~L~~rl~~~~~~ 58 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR--------LLTEKLKASQPS 58 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhccc
Confidence 3477888888899999999999999998888888888888777 777777776543
No 27
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=48.10 E-value=1e+02 Score=27.13 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000648 1315 ISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1370 (1373)
Q Consensus 1315 rk~Ei~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~~~ 1370 (1373)
|..++.+++..+.+++.--..+...+.++..+++.+..++........+-...+.+
T Consensus 2 ~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 2 RDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999998888877777766666555544
No 28
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.87 E-value=59 Score=35.89 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=46.3
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhh
Q 000648 1031 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAAS 1092 (1373)
Q Consensus 1031 ~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA~ 1092 (1373)
++++.|..+|..+++.+..|+.+-.-++.+|..|+..|. -|+++++|.++....|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt------~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT------TEEMQEEIQELKKEVAG 134 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHHH
Confidence 678888899999999999999998889998988887665 56888888888776555
No 29
>PRK04406 hypothetical protein; Provisional
Probab=47.39 E-value=66 Score=30.85 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHh
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1087 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~e 1087 (1373)
..+++.|..|-.+|...|+-+..|+....+-..+|..|+..|. .+.+++++.+
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~--------~L~~rl~~~~ 59 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK--------YVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhc
Confidence 3578888888888888899999998888888888888887777 6666666654
No 30
>PRK00736 hypothetical protein; Provisional
Probab=46.25 E-value=62 Score=30.38 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=38.2
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHh
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1087 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~e 1087 (1373)
+++.|..|-.++...|+-+..|+....+-..+|..|+..|. .+.+++++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~--------~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD--------ALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 45677778888888888888888887777777777777776 6666666654
No 31
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.60 E-value=79 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhh
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAA 1091 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA 1091 (1373)
.|.++-+.|..+.-.|..-|+.|+.+..+.+.++.+++..++ +...++.+++..+.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~--------~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE--------ELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
Confidence 445555666666667788888888888888888888887777 67777777766653
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.26 E-value=53 Score=30.67 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHh
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIY 1087 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~e 1087 (1373)
+++.|..|-.++...|+-+..|+....+-...|.+|+..|. .+..+++++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~--------~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR--------LLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhc
Confidence 56777778888888888888888887777777777776666 5556666554
No 33
>PRK00846 hypothetical protein; Provisional
Probab=44.80 E-value=75 Score=30.91 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhh
Q 000648 1025 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 1089 (1373)
Q Consensus 1025 ~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ens 1089 (1373)
....+++.|..|-.++...|+-+..|+....+....|..|+..|. .+..++++.+.+
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~--------~L~~rL~~~~~s 63 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR--------HLLEDLGKVRST 63 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhccc
Confidence 456788999999999999999999999998888888888888887 777777777643
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=42.23 E-value=62 Score=39.71 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccc------CCHHHHHHHHHHHhhhhhhccccccccc
Q 000648 1041 GRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSL------LTKEEIIRRIKSIYQSAASVICCSTKEF 1101 (1373)
Q Consensus 1041 k~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~------st~Eei~keI~~~ensAA~i~c~l~~r~ 1101 (1373)
..++++|+.++.+.+.++.++.+.++.+.+... ...+.+..|-.+.....|.++..+++.+
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g 128 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555555555555555555555542100 0011222222344555666777777643
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.96 E-value=98 Score=32.76 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=38.5
Q ss_pred chhhHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHH---------HHHHHHHHHHHhhcccccc
Q 000648 1019 MVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQ---------KMEVEEVLSKLQVSVEPYS 1072 (1373)
Q Consensus 1019 ~~~~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~q---------k~ele~~i~dLq~~L~~~~ 1072 (1373)
+..+-..-.+|++++..+..+++.++.++..|.++ ..+++.++..++.+|.++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444457788888899999998888888877665 5566666666666666553
No 36
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.95 E-value=60 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000648 1024 KIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQ 1065 (1373)
Q Consensus 1024 ~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq 1065 (1373)
.-...+++++..+..+|+.++++++.+..++.+++.+|.++|
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666666666666666666666665554
No 37
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.55 E-value=63 Score=39.65 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=41.1
Q ss_pred hhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhhccccc
Q 000648 1025 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCS 1097 (1373)
Q Consensus 1025 ~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA~i~c~l 1097 (1373)
.-++++.++..+..+|.+..++...|.+++.+++.++..+...|-. ...+-.++.++|.+++.....+..|.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~-s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE-TADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666655551 11223445556666655555544444
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.40 E-value=70 Score=37.40 Aligned_cols=8 Identities=63% Similarity=1.327 Sum_probs=3.3
Q ss_pred ceeccCCc
Q 000648 947 GRCTVPAI 954 (1373)
Q Consensus 947 g~C~vp~i 954 (1373)
+.|++|-+
T Consensus 63 ~~~~~P~L 70 (325)
T PF08317_consen 63 GYCTVPML 70 (325)
T ss_pred hccCChHH
Confidence 34444443
No 39
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=39.73 E-value=1.1e+02 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=48.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000648 1313 TRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLW 1368 (1373)
Q Consensus 1313 L~rk~Ei~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~ 1368 (1373)
++.++++..+...|...+.+....++.+.....-|+.....|+.....|.+|+..-
T Consensus 3 i~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken 58 (126)
T PF13863_consen 3 IEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKEN 58 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567888899999999999999999999999999998889999999999998654
No 40
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.41 E-value=76 Score=40.54 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=26.5
Q ss_pred chhhHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1019 MVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1019 ~~~~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
..++...-+++...++.|..++++++.+++.++++.++++.++..++.++.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544555555555555555555555555555555555555544444443
No 41
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.32 E-value=94 Score=37.19 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=60.4
Q ss_pred hhHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhhcccccc--
Q 000648 1021 PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCST-- 1098 (1373)
Q Consensus 1021 ~~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensAA~i~c~l~-- 1098 (1373)
++.+.-+++|+.-+.+..|+.++++-.+...+.+..-+..+.+|..+|.+.-.+.+.+-.+.|++++.++..--|++.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~Dm 87 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDM 87 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677888888888888888888877777777666666677777777655322222333333333333222122221
Q ss_pred -cccccCCCCCCCCCCeeeeccc-------ceeeccchh
Q 000648 1099 -KEFLCSKPRSNFMEDVVGPVAL-------IGTVCTNKL 1129 (1373)
Q Consensus 1099 -~r~~~~~~~S~~l~GIiGvVAe-------Li~V~~~yl 1129 (1373)
+.-| .+.+..+.=++|.|-- =.++.++|+
T Consensus 88 Ea~LP--kkNGlyL~liLGnVNVsll~k~~kf~yKdEYE 124 (330)
T PF07851_consen 88 EAFLP--KKNGLYLRLILGNVNVSLLSKQAKFKYKDEYE 124 (330)
T ss_pred HhhCC--CCCCcccceecccccceecccccccchhhhHH
Confidence 1111 1234466777776532 234566665
No 42
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.63 E-value=99 Score=29.96 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhh
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSA 1090 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensA 1090 (1373)
..++..|.+|-.+++.-|+-|.+|+..+.+-.-.+.++|+.|. -+.++.++.+.++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr--------~L~~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR--------LLTEKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcccc
Confidence 3578899999999999999999999999999999999999999 8888888887775
No 43
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.62 E-value=1e+02 Score=33.80 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHhhhhhHhhHHHHHHHHH-------------HHHHHHHHHHHHHhhcccccccCCHHHHHHHHH
Q 000648 1024 KIVNELESEVRNYGLCIGRHEKALKLLN-------------DQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIK 1084 (1373)
Q Consensus 1024 ~~~~~~q~~l~~lg~kIk~~E~~lk~Lk-------------~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~ 1084 (1373)
...++++.++..+-.+|++++..+...+ .++.+++.++..|+.+|..|...+|+.+.+..+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455666666666666666666665555 336777777888888888776677766555333
No 44
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.79 E-value=1.1e+02 Score=32.19 Aligned_cols=17 Identities=0% Similarity=0.093 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhhhcc
Q 000648 1078 EIIRRIKSIYQSAASVI 1094 (1373)
Q Consensus 1078 ei~keI~~~ensAA~i~ 1094 (1373)
.++.-+..++.++.+++
T Consensus 107 ~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 107 SVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445555555554443
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.26 E-value=93 Score=34.79 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhhHh
Q 000648 1027 NELESEVRNYGLCIG 1041 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk 1041 (1373)
.++|.++.++-.+++
T Consensus 96 p~le~el~~l~~~l~ 110 (206)
T PRK10884 96 PDLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.96 E-value=1.1e+02 Score=33.94 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhh
Q 000648 1030 ESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQ 1088 (1373)
Q Consensus 1030 q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~en 1088 (1373)
++.+..|-.+|-+++++...++.++...+.++..+++... .+..++.+.+-
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~--------~l~~~~~~~e~ 180 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE--------ALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3333333444434444444444445555566666665555 66666665543
No 47
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=34.45 E-value=2.7e+02 Score=23.69 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000648 1314 RISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQ 1369 (1373)
Q Consensus 1314 ~rk~Ei~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~~ 1369 (1373)
+|..++..++..+.+++.--..+...+..+..+++.+..++.+-.....+-...+.
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888899999998888888888988999999999988888877776665554
No 48
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.96 E-value=1.4e+02 Score=36.52 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=22.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Q 000648 1348 EKDLEKLKNSEDKFNSFMDLWQTSL 1372 (1373)
Q Consensus 1348 ~k~~~~~~kkk~~~~~~~~~~~~~~ 1372 (1373)
-+++.-|+||+++....++++|+.|
T Consensus 47 ~rIkq~FekkNqksa~~i~~lqkkL 71 (395)
T PF10267_consen 47 ARIKQVFEKKNQKSAQTIAQLQKKL 71 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3778889999999999999999876
No 49
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=32.13 E-value=27 Score=29.95 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.7
Q ss_pred hhhhcccceEEEEEecc
Q 000648 626 KLFQNAGAYTFSFHLTE 642 (1373)
Q Consensus 626 ~lf~~aG~Y~~~F~~~~ 642 (1373)
=.|.+||+|.++|...+
T Consensus 7 W~FT~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 7 WVFTKPGTYTLTVQATA 23 (41)
T ss_pred eeeCCCeEEEEEEEEEE
Confidence 35889999999997544
No 50
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.04 E-value=1.1e+02 Score=34.28 Aligned_cols=10 Identities=20% Similarity=0.229 Sum_probs=5.9
Q ss_pred cHHHHHHhcc
Q 000648 1271 DMIEAHTCIR 1280 (1373)
Q Consensus 1271 dM~~A~~~ak 1280 (1373)
++..|+.+++
T Consensus 224 ~i~~ai~ia~ 233 (251)
T PF11932_consen 224 EIRKAIRIAR 233 (251)
T ss_pred HHHHHHHHHh
Confidence 5556666655
No 51
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.96 E-value=1.3e+02 Score=35.42 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
+++++++..+..+.+++.++|+.|+++..+++.++.+|+....
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666665555
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.91 E-value=1.6e+02 Score=30.70 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1024 KIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1024 ~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
...++|+..|+.+-.++..+.+++.-|.++++++.++|.+|-...+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999888877666
No 53
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.03 E-value=1.1e+02 Score=28.31 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 000648 1047 LKLLNDQKMEVEE 1059 (1373)
Q Consensus 1047 lk~Lk~qk~ele~ 1059 (1373)
+..+++|..++.+
T Consensus 16 i~tvk~en~~i~~ 28 (55)
T PF05377_consen 16 INTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 54
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.84 E-value=1.7e+02 Score=31.84 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
.++..+..|-.+|++++.+++.+......+.+++..|+..+.
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.47 E-value=1.4e+02 Score=30.08 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHH--HHHHHHHhhcccccccCCHHHHHHHHHHHhhh
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEV--EEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 1089 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~el--e~~i~dLq~~L~~~~~st~Eei~keI~~~ens 1089 (1373)
-..+++..+-..+.+++.++..++.++..+ .+.+-+|+..+. ++..++..++.+
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~--------el~G~~~~l~~~ 87 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELA--------ELRGELKELSAR 87 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HHHhHHHHHHHH
Confidence 345666666666666666666666666666 555666666666 555555444443
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.31 E-value=1.4e+02 Score=31.55 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccCCHHHHHHHHHHHhhhhhh
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPY--SLLTKEEIIRRIKSIYQSAAS 1092 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~--~~st~Eei~keI~~~ensAA~ 1092 (1373)
++.........|..+...+..|..++.++++.+.+++..++-- ..++-|.+.+.|.-++..+..
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444411 123345677777766665544
No 57
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.83 E-value=3.1e+02 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1033 VRNYGLCIGRHEKALKLLNDQKMEVEEVLSKL 1064 (1373)
Q Consensus 1033 l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dL 1064 (1373)
+..+..++++++.++..++.+..+++.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555555555554
No 58
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=26.70 E-value=54 Score=41.94 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=131.0
Q ss_pred cchhhhhHhhhcccccccccccccCCCCCCCccccccccCCCcceeeeecCceEEEEeeccccceeEEEEeeHHHHhhcC
Q 000648 4 TDENSIVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVSKEVYTLHLEKEALMRCS 83 (1373)
Q Consensus 4 ~~~~sl~kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~sk~V~~l~lsr~~L~~~s 83 (1373)
|.++-+..-||++-|-.+....+..+++ ---.++|+||+| -++||-.-++|+|.||--++...+ .|.++
T Consensus 86 T~~Ev~~~LgTIAkSgT~~F~~~l~~~~--~~~~lIGQFGVG-FYSaFmVAdkV~V~T~~~~~~~~~-------~W~S~- 154 (623)
T COG0326 86 TKDEVIENLGTIAKSGTKEFLESLSEDQ--KDSDLIGQFGVG-FYSAFMVADKVTVITRSAGEDEAY-------HWESD- 154 (623)
T ss_pred CHHHHHHHHHHhhhccHHHHHHHhcccc--ccccccccccch-hhheeeeeeeEEEEeccCCCCcce-------EEEEc-
Confidence 3445566778888888877777655555 667899999997 678899999999999988776665 34344
Q ss_pred ccCceeeecceecCCChhhhccCCCCCeeEEEEe--ccc---ccccccc-cccccccceeee-eeeecCCCCCCCcCCCe
Q 000648 84 DAELTWRTNGGIRFPSKDEIADSPHGSFTKVEIW--EPK---LKSLDVK-PLGCKLKDIYFP-YIQCDEISSTGKTTRPI 156 (1373)
Q Consensus 84 ~~~~~WK~~g~~R~ps~~E~~~sphgsFTkV~I~--~~k---~~~~~i~-~L~~~LkdIY~~-YIq~d~~~~~gk~~~pv 156 (1373)
|+.+.-+.-.-++|. +| |.|+.. +=. .+.|-+. .+++-=-||-|| ||+.+... +++ -.
T Consensus 155 -g~g~ytv~~~~~~~~--------~G--T~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~-~~~---~~ 219 (623)
T COG0326 155 -GEGEYTVEDIDKEPR--------RG--TEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK-DEE---VI 219 (623)
T ss_pred -CCCceEEeeccCCCC--------CC--cEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc-ccc---ch
Confidence 444444332222221 23 555543 111 1245553 344444566666 34433322 222 11
Q ss_pred eee-ec-CcccccccCCeeee---eec---cccCC-Cce-EEEEEeeecccccccCCCCCCcc-cccccEEEEEEeeccc
Q 000648 157 EFQ-VN-GIDLAEVAGGEVAI---TNM---HSCNG-PDF-ILQLHFSLRQASATTNSPGSRPS-KEANARLKFVYFPVTE 225 (1373)
Q Consensus 157 ef~-~n-~~dL~ei~gg~~a~---~n~---~s~~g-~~F-vf~l~~~~~~~~~~~~~~~~~~~-~~~nA~v~~~YFP~~~ 225 (1373)
+-+ +| ..-||.-+-.++.= ... ..-++ .|+ +++++. ++ .+-| ...|+|-.
T Consensus 220 ~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~---------------EG~~ey~---~ll~iP~~- 280 (623)
T COG0326 220 EWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKV---------------EGRLEYT---ALLFIPSK- 280 (623)
T ss_pred hHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEeccc---------------ccceEEE---EEEEccCC-
Confidence 111 33 33344333322200 000 11123 333 555544 33 1211 23555532
Q ss_pred cccchHHHHHHHHhccccccccccc-----CCceeEEeccccccccccccccchhhhhhcchhhHHHHHHhhheeEEeec
Q 000648 226 EGESIDIIMNKLISEGCVAAANYDT-----RSRVSIRRLGRLLPDVHWAWLPLMDLRQRKGEKAHLLKKFCLRVKCFIDT 300 (1373)
Q Consensus 226 gkEsl~~~~~~L~~~~~~~~e~~~~-----f~rv~vrw~GRLlpea~w~~lpFM~~~~~~g~k~~il~~~~~RVK~~i~~ 300 (1373)
..|+. -+|..++-++-+|.| .+. ++|=.|.+=|||.|+.
T Consensus 281 --------------------aPfdl~~~~~k~glkLYv~rVfI~D---------------d~~-~llP~yl~Fv~GvIDS 324 (623)
T COG0326 281 --------------------APFDLFRRDRKRGLKLYVNRVFIMD---------------DAE-DLLPNYLRFVRGVIDS 324 (623)
T ss_pred --------------------CCcccccccccCCcEEEEeeeEEeC---------------Chh-hhhhHHHhhheeeeec
Confidence 12333 337888888777644 455 3444999999999996
Q ss_pred CCCCCCCCCcccccccchHHHHHHh
Q 000648 301 DAGFNPTPSKTDLAHQNLYTIALKN 325 (1373)
Q Consensus 301 dsgF~~T~sK~~L~~~~pft~aL~~ 325 (1373)
+ .-+++-|.- +..+|+.+.++++
T Consensus 325 ~-DLpLNvSRE-~LQ~n~~l~~Irk 347 (623)
T COG0326 325 E-DLPLNVSRE-ILQQNRILAAIRK 347 (623)
T ss_pred C-CCCcccCHH-HHccCHHHHHHHH
Confidence 5 367777764 4567777777763
No 59
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.16 E-value=2.6e+02 Score=30.76 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQ 1065 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq 1065 (1373)
+++++++..|-.+++.++.++..|+.++..+++.+..|-
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 60
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.12 E-value=1.7e+02 Score=34.16 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQ 1065 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq 1065 (1373)
+|.+|..|..+|.++-..++.++.+.++++.+|..|+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 61
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=2.1e+02 Score=33.51 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhh
Q 000648 1078 EIIRRIKSIYQSA 1090 (1373)
Q Consensus 1078 ei~keI~~~ensA 1090 (1373)
+.+++|..+++.+
T Consensus 84 ~l~~eI~~~~~~I 96 (265)
T COG3883 84 KLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554443
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.92 E-value=1.4e+02 Score=38.32 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPY 1071 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~ 1071 (1373)
.....+..++..++.++.+.+.|++++++++.++.+|.++|+.+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777788888888888888888888888888888888855
No 63
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.79 E-value=1.4e+02 Score=38.13 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
.++|.+-++|..+|.++...+++||+.+.+.+.++..|+..++
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 3455555566666666666666666666666666666665555
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.66 E-value=2.1e+02 Score=30.21 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1025 IVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1025 ~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
....++.+++.+.....+.|.+|.-|......++.++..++..|.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555
No 65
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.62 E-value=2.5e+02 Score=31.59 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 000648 1078 EIIRRIKSIYQ 1088 (1373)
Q Consensus 1078 ei~keI~~~en 1088 (1373)
++.++|.+.++
T Consensus 88 ~L~~qi~~~~~ 98 (251)
T PF11932_consen 88 SLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.40 E-value=2.1e+02 Score=33.76 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=24.0
Q ss_pred hHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000648 1022 IMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVS 1067 (1373)
Q Consensus 1022 ~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~ 1067 (1373)
+...-++++.+...+-.+++++|++-..|.+|+.+++.+..+++..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555433
No 67
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.16 E-value=1.8e+02 Score=29.91 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=21.3
Q ss_pred hHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000648 1026 VNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVS 1067 (1373)
Q Consensus 1026 ~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~ 1067 (1373)
.+.+++++..+..+|+.+|+..+.|..++.+++.++.++...
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555554444433
No 68
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.15 E-value=5.3e+02 Score=33.13 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=10.2
Q ss_pred cCCccCCCCCceeEE
Q 000648 951 VPAISLPQNEGCFCF 965 (1373)
Q Consensus 951 vp~i~lP~~~G~f~~ 965 (1373)
....-||...|.||-
T Consensus 77 F~ayyLPk~~~e~Yq 91 (546)
T PF07888_consen 77 FQAYYLPKDDDEFYQ 91 (546)
T ss_pred ECcccCCCCCCCeEE
Confidence 457888987666554
No 69
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.02 E-value=2.4e+02 Score=35.51 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=31.7
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhh
Q 000648 1031 SEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQS 1089 (1373)
Q Consensus 1031 ~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ens 1089 (1373)
..|.+.-.+.+++|++|+.|+++++.+.....+++.+|+ ++..++..++..
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk--------eLEaE~~~Lk~Q 119 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE--------KLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--------HHHHHHHHHHHH
Confidence 444445567777777777777776666666666666666 555555555333
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.83 E-value=2e+02 Score=26.73 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKL 1064 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dL 1064 (1373)
+++.++-.+...|..++.++..++.+.+++++.+.+|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 71
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=23.80 E-value=2.6e+02 Score=29.67 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHH
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIR 1081 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~k 1081 (1373)
++..+.++.+..=++.-+.+|+.+++++..+..++..|+..+-.--.-|+++|.+
T Consensus 42 ~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVee 96 (126)
T PF07028_consen 42 KKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4455555555555556666788888888888888888887766433455666665
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.39 E-value=1.8e+02 Score=33.57 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=10.7
Q ss_pred hHhhhHHHHHHHHhhhhhHhhHH
Q 000648 1022 IMKIVNELESEVRNYGLCIGRHE 1044 (1373)
Q Consensus 1022 ~~~~~~~~q~~l~~lg~kIk~~E 1044 (1373)
+-+-..+++.+|+.+..++++.+
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555554433
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.06 E-value=1.9e+02 Score=37.01 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=16.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1036 YGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1036 lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
+-.+-.+.+..++.|+++..+.++++..||....
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEND 318 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555555555444
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.61 E-value=2.8e+02 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 000648 1050 LNDQKMEVEEVLSKLQ 1065 (1373)
Q Consensus 1050 Lk~qk~ele~~i~dLq 1065 (1373)
|+.+..++.+++..++
T Consensus 137 L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 137 LKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 75
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.59 E-value=76 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccCCHHHHHHH
Q 000648 1042 RHEKALKLLNDQKMEVEEVLSKLQVSVE--PYSLLTKEEIIRR 1082 (1373)
Q Consensus 1042 ~~E~~lk~Lk~qk~ele~~i~dLq~~L~--~~~~st~Eei~ke 1082 (1373)
+.+.++.-|..++..++.++..++..|. .|..+.|++|..+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~ 43 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEK 43 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHH
Confidence 3566777777888888888888888888 5555666655553
No 76
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=22.54 E-value=1.7e+02 Score=27.51 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=46.0
Q ss_pred CeeEeeeeccCCccCCCCCCceeEeeccceeEEecccccccccCCCceeeEeeeeeccccccccCccccceEEEeeCCCC
Q 000648 684 PLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKP 763 (1373)
Q Consensus 684 p~~ia~~D~y~N~vpfs~~P~~~~~l~~~~l~~i~~~~~i~ls~d~~~l~i~d~~v~~~~L~~i~p~y~a~L~i~~~~~~ 763 (1373)
||++..-|+|... -..+. .=+++++ .+..+.++.+.|.+.+..|+.|.+....+++
T Consensus 1 p~r~~V~~v~~~~--~g~vv--~G~v~~G---~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~----------------- 56 (83)
T cd03698 1 PFRLPISDKYKDQ--GGTVV--SGKVESG---SIQKGDTLLVMPSKESVEVKSIYVDDEEVDY----------------- 56 (83)
T ss_pred CeEEEEEeEEEcC--CCcEE--EEEEeee---EEeCCCEEEEeCCCcEEEEEEEEECCeECCE-----------------
Confidence 5677777777522 11111 1111111 3545777888888877788877766533333
Q ss_pred ceeeeeeEecCCCcceEEeccCcccCCCCcchh
Q 000648 764 VSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVI 796 (1373)
Q Consensus 764 ~s~s~pc~V~pG~~~~~~~~p~~~~~L~Pg~~~ 796 (1373)
..||+-+.+.+..-..+.+.+|+++
T Consensus 57 --------a~aGd~v~~~l~~~~~~~v~~G~vl 81 (83)
T cd03698 57 --------AVAGENVRLKLKGIDEEDISPGDVL 81 (83)
T ss_pred --------ECCCCEEEEEECCCCHHHCCCCCEE
Confidence 4567777777654334566677654
No 77
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.53 E-value=2.6e+02 Score=36.46 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=49.4
Q ss_pred hhHhhhHHHHHHHHhhhhhHhhHHHHH------HHHHHHHHHHHHHHHHHhhccc-ccccCCHHHHHHHHHHHhhh
Q 000648 1021 PIMKIVNELESEVRNYGLCIGRHEKAL------KLLNDQKMEVEEVLSKLQVSVE-PYSLLTKEEIIRRIKSIYQS 1089 (1373)
Q Consensus 1021 ~~~~~~~~~q~~l~~lg~kIk~~E~~l------k~Lk~qk~ele~~i~dLq~~L~-~~~~st~Eei~keI~~~ens 1089 (1373)
.++...++|+.+++.|..++.+-.|++ +.+....+.++..+.+++...+ .++..+++.+.++|+..+..
T Consensus 246 ~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k 321 (683)
T PF08580_consen 246 RLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKK 321 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence 466777888888888888887777765 3444456677777777777765 25677788888888877654
No 78
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=22.53 E-value=2.8e+02 Score=30.89 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000648 1320 IEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1370 (1373)
Q Consensus 1320 ~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~~~ 1370 (1373)
.+|+.++.|.++++.+-.++|++-.+++++.-.++ ++|+..|...|+
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL----~EFVEIMKeMQk 96 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKL----HEFVEIMKEMQK 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHH
Confidence 47888888888888888889999999998876444 567777666665
No 79
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.37 E-value=1.4e+02 Score=35.32 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=40.2
Q ss_pred hHhhhHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1022 IMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1022 ~~~~~~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
+....+-+++.+..+..+++..+++|...+.++.++++++..|+..++
T Consensus 212 v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 212 VNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445577888888899999999999999999999999999998888
No 80
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=4.6e+02 Score=29.81 Aligned_cols=72 Identities=25% Similarity=0.462 Sum_probs=38.4
Q ss_pred cccccEEEEEcCCC--CcceeeccCCCCCceeEEEEeccccccccceeeeeecceeccCCccCCCCCceeEEEEeccccc
Q 000648 896 QLEDITFEIVDSKG--AVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYT 973 (1373)
Q Consensus 896 ql~~l~f~vvd~dG--~vDt~ih~d~~~g~fh~lti~sds~~~~~~iry~f~~g~C~vp~i~lP~~~G~f~~~~~hs~~~ 973 (1373)
.=..+.|||+|. | .||..||+-+.+. .|. -+-+| +=.|.|.- ..+|.|.| -||-.++
T Consensus 41 d~~~vsF~v~~g-g~~~vd~~I~gP~~~~-i~~--~~~~s-----sgk~tF~a-----------~~~G~Y~f-CF~N~~s 99 (201)
T KOG1692|consen 41 DKLSVSFEVIDG-GFLGVDVEITGPDGKI-IHK--GKRES-----SGKYTFTA-----------PKKGTYTF-CFSNKMS 99 (201)
T ss_pred CEEEEEEEEecC-CccceeEEEECCCCch-hhh--ccccc-----CceEEEEe-----------cCCceEEE-EecCCCC
Confidence 334688888885 4 4778887754433 333 22233 33344431 24555443 2333333
Q ss_pred ---ceeeEEeeeeeecCC
Q 000648 974 ---ELNISIKVPIVRAPK 988 (1373)
Q Consensus 974 ---el~la~kvqv~~~~~ 988 (1373)
-=-+.+-|+|..++.
T Consensus 100 ~mtpk~V~F~ihvg~~~~ 117 (201)
T KOG1692|consen 100 TMTPKTVMFTIHVGHAPQ 117 (201)
T ss_pred CCCceEEEEEEEEeeccc
Confidence 113667888888887
No 81
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.05 E-value=3.6e+02 Score=32.54 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000648 1317 TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQT 1370 (1373)
Q Consensus 1317 ~Ei~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~~~ 1370 (1373)
.|.++++++.+++++.-....+++++..++++++...+++++.+.+...+.+++
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~ 57 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKR 57 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888877777777777777788887777777777777776665543
No 82
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=22.00 E-value=96 Score=35.30 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=52.4
Q ss_pred CCCCc----chhhhHhhhhhhhc---cccccccceEEEeecceeeeccccccccccCcccccCcCceeEeecCCc-----
Q 000648 789 ILLPG----SVIKMLKLEMFDAF---YNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGK----- 856 (1373)
Q Consensus 789 ~L~Pg----~~~~~~vle~FD~~---~N~v~eG~ev~i~~~G~~~~d~~g~~rkV~~~GcidLsgllkvtagyg~----- 856 (1373)
...|| .++-+.+.++||.| .|+++.|.=+-..|+.. .++||||
T Consensus 6 ~~~~g~~v~~~i~~~~~~~~~~~y~~~~~l~~GQi~w~avs~~-------------------------e~~~~gK~l~~~ 60 (220)
T PF07900_consen 6 GFIGGDKVVRMIVELVKSTFDQYYPEPEELKPGQILWLAVSAD-------------------------EPPSYGKPLKDC 60 (220)
T ss_pred CCCChHHHHHHHHHHHHHHHhccCCChhhCCCCceEEEEeccC-------------------------CCccCCCchhhc
Confidence 45666 45556677789998 59999999888887753 4688999
Q ss_pred ---ceeEEEecC--Cce---eeecchhhHHHHHhhhcC
Q 000648 857 ---NVSLSVLSD--NGV---IFKQDFQTEKRELRVISG 886 (1373)
Q Consensus 857 ---~~slsv~~~--~~~---if~~~~~~~~r~lr~~~~ 886 (1373)
.|.|||... .+. -|++-=..++|++|+..|
T Consensus 61 ~lvpV~LTl~~~ED~e~~~~~~~~~elr~~rIvRl~~E 98 (220)
T PF07900_consen 61 KLVPVILTLVDPEDIEMRNEKYGLSELRKHRIVRLTNE 98 (220)
T ss_pred ceeeEEEEecCHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 588898875 222 234445567788888877
No 83
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=21.95 E-value=2.8e+02 Score=26.96 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHhhhhhHhhHHHHHHHHH----HHHHHHHHHHHHHhhcccccccCCHHHHHHHHHH
Q 000648 1024 KIVNELESEVRNYGLCIGRHEKALKLLN----DQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKS 1085 (1373)
Q Consensus 1024 ~~~~~~q~~l~~lg~kIk~~E~~lk~Lk----~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~ 1085 (1373)
+++++||..++.-=..|...++.|.+.. .++..+++.=.....+|+ .++.||++
T Consensus 8 DNVEkLQ~mi~nTieN~~eAee~l~~~~el~~~~~~~i~eKN~RR~eSi~--------~~r~EIkD 65 (70)
T TIGR03090 8 DNVEKLQQMIDNTIENMEEANEYIEAHAELSEEEKQRIEEKNERREQSID--------GFRSEIKD 65 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhHHHHHH--------HHHHHHHh
Confidence 5788999988877777777788777666 455556666666666666 55555554
No 84
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.77 E-value=1.9e+02 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHH
Q 000648 1029 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEV 1060 (1373)
Q Consensus 1029 ~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~ 1060 (1373)
+++.+..+...|+.++++++.|..++.+++.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 85
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.75 E-value=2.7e+02 Score=28.83 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000648 1043 HEKALKLLNDQKMEVEEVLSKLQVSVE 1069 (1373)
Q Consensus 1043 ~E~~lk~Lk~qk~ele~~i~dLq~~L~ 1069 (1373)
++..+..|..|.......+.+||+++.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444666666665
No 86
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.64 E-value=1.6e+02 Score=32.27 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc----cCCHHHHHHHHHHHhhhhhhcccccc
Q 000648 1043 HEKALKLLNDQKMEVEEVLSKLQVSVEPYS----LLTKEEIIRRIKSIYQSAASVICCST 1098 (1373)
Q Consensus 1043 ~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~----~st~Eei~keI~~~ensAA~i~c~l~ 1098 (1373)
++..+..+.+++.++++.+..+-+.+.+|- -+--|++.++|..+|...|..+-...
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444444444444445555552 23358999999999999988554443
No 87
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=4e+02 Score=26.09 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 000648 1321 EALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSL 1372 (1373)
Q Consensus 1321 eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~~~~~~~~~~~ 1372 (1373)
-|+-++++++.+...+. .|..-.++.++.+++.++.+++--+.||+.|
T Consensus 22 LLQmEieELKEknn~l~----~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 22 LLQMEIEELKEKNNSLS----QEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHhhHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566655544443 3444455667788888888888888898865
No 88
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=21.43 E-value=2.4e+03 Score=29.79 Aligned_cols=282 Identities=23% Similarity=0.246 Sum_probs=154.1
Q ss_pred eeeecccC-----CCeeEeeeeccCCccCCCCCCc------eeEeec-----cc-eeEEecccccccccCCCceeeEeee
Q 000648 675 RVRVGSFL-----PPLSVACYDIYDNRIPFESKPQ------FLVKIK-----PS-KIIKVEDKLKWNLSPDKLTLNIQDI 737 (1373)
Q Consensus 675 ~vrvGs~l-----pp~~ia~~D~y~N~vpfs~~P~------~~~~l~-----~~-~l~~i~~~~~i~ls~d~~~l~i~d~ 737 (1373)
.||.=-+| +|.-|.|+|..|-.--.+-.|. ..++.+ ++ |...|.+-.++.-|+.+.. -+-++
T Consensus 605 ~v~~~~t~aiegPskaei~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~vpgSPF~~~Vt~~~s~r~s~~~Vg-s~~ev 683 (1113)
T KOG0518|consen 605 TVRYAPTLAIEGPSKAEIRCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHVPGSPFVALVTGDESIRTSHLSVG-SIHEV 683 (1113)
T ss_pred eEEeccccccCCCCccceeEEeCCCCcEEeccCCCCCceEEEEEEECCeeCCCCCceEEEecccccccccceec-ceeeE
Confidence 45555554 6788999998877655554442 234432 11 3333433334444444321 11222
Q ss_pred ee--ccccccccCccccceEEEeeCCCCceeeeee--EecCCCcceEEeccCcc----------cCCCCcchhhhHhhhh
Q 000648 738 LV--ASSKLDEIRPDYRATLVISSKDKPVSVSIPC--RVTPGSLKNVAVHPQNL----------GILLPGSVIKMLKLEM 803 (1373)
Q Consensus 738 ~v--~~~~L~~i~p~y~a~L~i~~~~~~~s~s~pc--~V~pG~~~~~~~~p~~~----------~~L~Pg~~~~~~vle~ 803 (1373)
.| ...+|.. |..+|.+=.-. --|| |-.||-.-.++|+|+-- ....||+=|..+|-|-
T Consensus 684 ~in~~~~~~s~--------ltaeI~~PsGn-~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~hVpgsPf~i~V~~~ 754 (1113)
T KOG0518|consen 684 TINITEADLSV--------LTAEIVDPSGN-PEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKHVPGSPFSIKVSES 754 (1113)
T ss_pred EeeccccCCce--------eEEEEECCCCC-ccceeeEecCCCceeEEECCCcCcceEEEEEEcceECCCCCeEEEeccc
Confidence 22 1112211 22222221111 2345 44688888889988753 3788999888877655
Q ss_pred h-h-----hcccccccc---ceEEEeec-------ceeeeccccccccccCcccccC-cCceeEeec------CCcc---
Q 000648 804 F-D-----AFYNNVKKG---LEVELNVD-------GFCIEDQLGLRRKVDGYGCIDL-SGLLKVKAG------YGKN--- 857 (1373)
Q Consensus 804 F-D-----~~~N~v~eG---~ev~i~~~-------G~~~~d~~g~~rkV~~~GcidL-sgllkvtag------yg~~--- 857 (1373)
= | .|+--+++| .--++-+| |..+.=+--. |||-+ |-|+ +|.-||+-- |-=|
T Consensus 755 e~dAsk~~v~g~g~~~G~t~ep~~fivDtr~agyGgLsi~~~Gps--kvd~~-~~d~~dGt~kV~ytPtepG~Y~I~i~F 831 (1113)
T KOG0518|consen 755 EIDASKVRVSGQGLKEGHTFEPAEFIVDTRKAGYGGLSISVQGPS--KVDLN-VEDREDGTCKVSYTPTEPGTYIINIKF 831 (1113)
T ss_pred cccceeEEEecccccccccccchheEeccccCCCCceEEEEeCCc--ccccc-eeecCCCeEEEEEeCCCCceEEEEEEE
Confidence 2 2 356666777 22222222 1222211111 44332 3333 477777521 2111
Q ss_pred -------eeEEEecCCceeeecchhhHHHHHhhhcCCCCccc----cCCcccccEEEEEcCCCCcceeeccCCCCCc---
Q 000648 858 -------VSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCT----VGSQLEDITFEIVDSKGAVDVTIHDDDKSGQ--- 923 (1373)
Q Consensus 858 -------~slsv~~~~~~if~~~~~~~~r~lr~~~~~P~~c~----~G~ql~~l~f~vvd~dG~vDt~ih~d~~~g~--- 923 (1373)
--++|.--++.+-++..+-.+|.+++++.--.|.. ++-.-.+++.+++|..|-++-++=.|--.|.
T Consensus 832 ad~~I~gSPftVkv~~~~~vvesi~~~~~~~~va~~g~~~~l~lk~~~~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~v 911 (1113)
T KOG0518|consen 832 ADEHIKGSPFTVKVTGESRVVESITRDREAPSVARVGHTCSLDLKATEASSQDITARVTDPSGRVFEAEIVDLGQGTYQV 911 (1113)
T ss_pred cCccCCCCceEEEecCCeeEeeeeeecccccceecccceeeeeeecCCCCccceEEEeeCCCCCccccEEEECCCceEEE
Confidence 12344444445667777888888998887444443 3444567899999999999887766555552
Q ss_pred --------eeEEEEeccccccccceeeeeecceeccCCcc---------CCCCCceeEEEEeccccc
Q 000648 924 --------SHTLTIKSDVINTENSIRYAFRQGRCTVPAIS---------LPQNEGCFCFVATHSQYT 973 (1373)
Q Consensus 924 --------fh~lti~sds~~~~~~iry~f~~g~C~vp~i~---------lP~~~G~f~~~~~hs~~~ 973 (1373)
-||+++++.-.-.|++- |-.|+|--+... .=.+.|.+ |--||+.--
T Consensus 912 rFtP~e~G~~tl~V~y~~~~vegsp---ftvgs~~e~~ahkvra~g~Gl~R~~~g~~-F~I~~rea~ 974 (1113)
T KOG0518|consen 912 RFTPKEPGNHTLSVKYKDQHVEGSP---FTVGSLGEGGAHKVRAAGPGLERGEAGEP-FSIWTREAG 974 (1113)
T ss_pred EecCCCCCceEEEEEecCccCCCCc---eeeecccccccceeeccCCceeeccccCc-eeEeehhcC
Confidence 49999999888888886 777777654332 12345555 555555433
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.39 E-value=4e+02 Score=29.69 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000648 1316 STQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFN 1362 (1373)
Q Consensus 1316 k~Ei~eLe~qlee~k~k~~klee~ik~e~~ll~k~~~~~~kkk~~~~ 1362 (1373)
+.++.+++.+++.++..++.+.+.++..+..+.+.+..++.++..+.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666655555555555555444443
No 90
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.24 E-value=1.5e+02 Score=31.86 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhh
Q 000648 1041 GRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSA 1090 (1373)
Q Consensus 1041 k~~E~~lk~Lk~qk~ele~~i~dLq~~L~~~~~st~Eei~keI~~~ensA 1090 (1373)
++.++.+++|++++++++..+.+++..|. ++-+++..+.+.+
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~--------~l~~~~~~l~~~~ 131 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALA--------ELAQRIEQLEQEA 131 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 36677777777777777777777777777 5555555554443
No 91
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.08 E-value=3e+02 Score=25.79 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000648 1028 ELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSV 1068 (1373)
Q Consensus 1028 ~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~dLq~~L 1068 (1373)
.+++++..+..++++|++++..|+......+..+..+...|
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l 43 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQL 43 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555444444333
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.47 E-value=3.1e+02 Score=37.49 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=35.9
Q ss_pred CCCeeeecccceeeccchhhhHHHhhhhhchhc--eEEeccHHHHHHHHHhh
Q 000648 1111 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQML--ALVCRSFEAAFALEKYE 1160 (1373)
Q Consensus 1111 l~GIiGvVAeLi~V~~~ylsAlLseyLGietmL--~IVvrs~e~AK~li~YL 1160 (1373)
.+|++|...+|++.|+.|..+ +..++ -+||+|-+.|+.+....
T Consensus 588 ~~g~~~~a~dli~~d~~~~~~-------~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 588 APGFLGLASDLIDFDPKYEPA-------VRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred ccchhHHHHHHhcCCHHHHHH-------HHHHhCCeEEecCHHHHHHHHHhc
Confidence 689999999999999988887 44555 78999999998876655
No 93
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.31 E-value=2.6e+02 Score=33.21 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=8.4
Q ss_pred ecceeccCCccC
Q 000648 945 RQGRCTVPAISL 956 (1373)
Q Consensus 945 ~~g~C~vp~i~l 956 (1373)
+.|.|+||-+-|
T Consensus 56 ~A~~~~iP~LEl 67 (312)
T smart00787 56 VAGYCTVPLLEL 67 (312)
T ss_pred HHhcCCCcHHHH
Confidence 667777777655
No 94
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.30 E-value=1.8e+02 Score=37.27 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=10.4
Q ss_pred eeeccchhhhHHHhhhh
Q 000648 1122 GTVCTNKLSRTLAEYLG 1138 (1373)
Q Consensus 1122 i~V~~~ylsAlLseyLG 1138 (1373)
|.-.++.+..++-+.++
T Consensus 209 G~~~d~~lk~~fq~t~~ 225 (907)
T KOG2264|consen 209 GQSEDEWLKQVFQETIP 225 (907)
T ss_pred ccchHHHHHHHHHHhcc
Confidence 55566677766655555
No 95
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.27 E-value=3.8e+02 Score=27.87 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 000648 1027 NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLS 1062 (1373)
Q Consensus 1027 ~~~q~~l~~lg~kIk~~E~~lk~Lk~qk~ele~~i~ 1062 (1373)
+.+.+.+..+...+.+++..+.-|+.++.+++.++.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
Done!