Query 000648
Match_columns 1373
No_of_seqs 157 out of 239
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 15:54:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000648.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_422-426//hhsearch_pdb/000648hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l51_B Structural maintenance 1.0 1 1 184.9 9.7 140 1110-1302 15-160 (166)
2 3nwc_A SMC protein; structural 1.0 1 1 177.1 11.2 146 1110-1313 32-180 (189)
3 3l51_A Structural maintenance 1.0 1 1 167.8 14.3 147 1106-1300 9-161 (161)
4 1gxl_A SMC, chromosome segrega 1.0 1 1 165.5 13.4 168 1110-1332 40-212 (213)
5 2wd5_A Structural maintenance 1.0 1 1 163.4 7.1 139 1111-1302 51-197 (233)
6 2wd5_B Structural maintenance 1.0 1 1 158.7 14.1 163 1110-1331 45-211 (213)
7 1gxj_A SMC, chromosome segrega 1.0 1 1 158.0 11.8 141 1111-1302 29-174 (186)
8 3ied_A Heat shock protein; HSP 1.0 1 1 26.9 0.7 25 37-62 173-197 (272)
9 3peh_A Endoplasmin homolog; st 1.0 1 1 24.6 0.5 55 7-66 108-164 (281)
10 3nmq_A Heat shock protein HSP 1.0 1 1 24.0 1.0 54 9-66 103-156 (239)
No 1
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=1.00 E-value=1 Score=184.95 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=117.4
Q ss_pred CCCCEEEECCCCEEECCCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 78870141122133146124347876420200124796367888999973311885100001354531176669905897
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~GR~TFL 1189 (1373)
.++||+|.|++|++|+++|..|+ +.+|| .|.+|||+|+++|+.+++|| ++++.||+|||
T Consensus 15 ~~~Gv~G~v~dLi~v~~~y~~Ai-e~alg--~l~~iVVd~~~~A~~~i~~L------------------k~~~~GRatfl 73 (166)
T 3l51_B 15 RIPGIYGRLGDLGAIDEKYDIAI-SSCCH--ALDYIVVDSIDTAQECVNFL------------------KKHNIGIATFI 73 (166)
T ss_dssp SSTTEEEEGGGSCBCCGGGHHHH-HHHCG--GGGSEEESCHHHHHHHHHHH------------------HHTTCCCCCEE
T ss_pred CCCCCEEEHHHHEEECHHHHHHH-HHHHH--HCCEEEECCHHHHHHHHHHH------------------HHCCCCEEEEE
T ss_conf 99971688778030078799999-99971--28429988799999999999------------------87299707999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 51797889999999981001359999999999999707987123213-62232111136887258599986027499911
Q 000648 1190 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1268 (1373)
Q Consensus 1190 PLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~l-D~k~~~~~T~~g~GLRetLfy~LLGrllVyeT 1268 (1373)
||+.|+++... . +... .|+....|.++|++ |+++. .+|+++||+++|++
T Consensus 74 pL~~i~~~~~~----~------------~~~~-~~~~~~~a~dlv~~~d~~~~------------~a~~~llg~tlVv~- 123 (166)
T 3l51_B 74 GLDKMTVWAKK----M------------SKIQ-TPENTPRLFDLVKVKNEEIR------------QAFYFALRDTLVAN- 123 (166)
T ss_dssp EGGGTGGGTTS----C------------CCCC-CGGGCCBHHHHCBCSCHHHH------------HHHHHHHTTCEEES-
T ss_pred ECCCCCCCCCC----C------------CCCC-CCCCHHHHHHEEECCCHHHH------------HHHHHHCCCEEEEC-
T ss_conf 88655545566----3------------3022-66546568520407868899------------99999829989989-
Q ss_pred HHCHHHHHHHCC-----CCEEEECCCEECCCCEEEECCC
Q ss_conf 323999997602-----8579804843206842882468
Q 000648 1269 RKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLGCG 1302 (1373)
Q Consensus 1269 redM~~A~~lak-----~giVTLDGeII~~gGsiTGGs~ 1302 (1373)
|++.|+.++. .++|||||++++++|+||||+-
T Consensus 124 --dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 124 --NLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp --SHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred --CHHHHHHHHHHHCCCCEEEECCCEEEECCEEEECCCC
T ss_conf --9999999888608994899789889958988978885
No 2
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=177.06 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=122.9
Q ss_pred CCCCEEEECCCCEEECCC-HHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEE
Q ss_conf 788701411221331461-2434787642020012479636788899997331188510000135453117666990589
Q 000648 1110 FMEDVVGPVALIGTVCTN-KLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLV 1188 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~d~-ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~GR~TF 1188 (1373)
..+||+|.|++|++|+++ |..| ++.+||. .+.+|||++.++|+.+++|+ ++++.||+||
T Consensus 32 ~~~gv~G~l~dLi~V~~~kye~A-ve~aLG~-~l~~iVVd~~~~A~~~i~~L------------------k~~~~GRatf 91 (189)
T 3nwc_A 32 GIGGIYGTLAELIKVKDEAYALA-IEVALGN-RADNVVVEDELVAEKAIKYL------------------KEHKLGRLTF 91 (189)
T ss_dssp CCCSEEEEHHHHCEESCGGGHHH-HHHHHGG-GGGCEEESSHHHHHHHHHHH------------------HHTTCCCCCE
T ss_pred CCCCCEEEHHHHEEECHHHHHHH-HHHHHCC-CCCCEEECCHHHHHHHHHHH------------------HHCCCCCEEE
T ss_conf 78985577889315683568999-9998360-44607878889999999999------------------8648871499
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 75179788999999998100135999999999999970798712321362232111136887258599986027499911
Q 000648 1189 ICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1268 (1373)
Q Consensus 1189 LPLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LLGrllVyeT 1268 (1373)
|||+.+++.. ++ .++|++ |.++|++|+++. .+++++||+++|++
T Consensus 92 lpl~~i~~~~------------------~~---~~~g~~--a~dlv~~d~~~~------------~a~~~llg~tlvv~- 135 (189)
T 3nwc_A 92 LPLNKIKPKH------------------VD---SSVGLP--AVDVIEYDQKIE------------NAVKFALGDTVIVN- 135 (189)
T ss_dssp EETTTCCCCC------------------CC---SCSSEE--GGGGEECCGGGH------------HHHHHHHTTEEEES-
T ss_pred EECCCCCCCC------------------CC---CCCCCE--EEEEECCCHHHH------------HHHHHHHCCEEEEC-
T ss_conf 9898666666------------------88---999937--765543677788------------99998819989999-
Q ss_pred HHCHHHHHHHCC-CCEEEECCCEECCCCEEEECCCC-CCCCCCCCCC
Q ss_conf 323999997602-85798048432068428824689-8655564334
Q 000648 1269 RKDMIEAHTCIR-HGAVSLDGGILKEDGIISLGCGN-PTICFPIVRT 1313 (1373)
Q Consensus 1269 redM~~A~~lak-~giVTLDGeII~~gGsiTGGs~~-~~~kf~~s~l 1313 (1373)
|++.|+.+.. .++|||||++++++|+||||+.+ ...+|...-+
T Consensus 136 --dl~~A~~l~~~~r~VTldGd~i~~~G~~tGG~~~~~~~~f~~~~~ 180 (189)
T 3nwc_A 136 --SMEEARPHIGKVRMVTIEGELYERSGAITGGHFRARGLAVDTTKL 180 (189)
T ss_dssp --CSGGGGGGTTTSEEEETTSCEECTTSCEECSCSSCCCSEECSSCC
T ss_pred --CHHHHHHHHCCCEEEECCCCEEECCEEEEECCCCCCCCEECHHHE
T ss_conf --999999986797399689819978889980898998751112220
No 3
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=1.00 E-value=1 Score=167.79 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=117.2
Q ss_pred CCCCCCCCEEEECCCCEEEC-CCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 98877887014112213314-61243478764202001247963678889999733118851000013545311766699
Q 000648 1106 PRSNFMEDVVGPVALIGTVC-TNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDG 1184 (1373)
Q Consensus 1106 ~aS~~l~GIiGvVAeLi~V~-d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~G 1184 (1373)
......+||+|.|++|++|+ ++|..| ++.+||. .|.+|||+|.++|+.+++|+ + ..|
T Consensus 9 ~~~~~~~gv~G~v~dLi~v~d~~y~~A-ve~alG~-~l~~iVVd~~~~A~~~i~~~------------------~--~~G 66 (161)
T 3l51_A 9 EKNWNRNSVKGLVASLINVKDNSTATA-LEVVAGE-RLYNVVVDTEVTAKKLLEKG------------------E--LKR 66 (161)
T ss_dssp STTCCGGGEEEEGGGSCEESCGGGHHH-HHHHHGG-GGGCEEESCHHHHHHHHHHS------------------C--CSS
T ss_pred CCCCCCCCCEEEHHHHEEECCHHHHHH-HHHHHCC-CCCEEEECCHHHHHHHHHHH------------------H--HCC
T ss_conf 999885754788779125184219999-9998341-12349989789999999987------------------5--278
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEE
Q ss_conf 05897517978899999999810013599999999999997079871232136223211113688725859998602749
Q 000648 1185 RYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQ 1264 (1373)
Q Consensus 1185 R~TFLPLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LLGrll 1264 (1373)
|+|||||+.|+++.. +..++. . +.....++.+++|.|+|++|+++. .++++|||+++
T Consensus 67 R~tflpL~~i~~~~~----~~~~~~--~-----~~~~~~~~~~~~a~dlv~~d~~~~------------~a~~~llg~tl 123 (161)
T 3l51_A 67 RYTIIPLNKISARCI----APETLR--V-----AQNLVGPDNVHVALSLVDYKPELQ------------KGMEFVFGTTF 123 (161)
T ss_dssp CEEEEETTTCCCCCC----CHHHHH--H-----HHHHHCTTSEEEGGGGEECCGGGH------------HHHHHHHTTCE
T ss_pred CEEEEECCCCCCCCC----CHHHHH--H-----HHHCCCCCCHHHHHHHHCCCHHHH------------HHHHHHCCCEE
T ss_conf 579998764455676----877775--5-----440478861567888850788899------------99999839989
Q ss_pred EEECHHCHHHHHHHCC-----CCEEEECCCEECCCCEEEEC
Q ss_conf 9911323999997602-----85798048432068428824
Q 000648 1265 VYKTRKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLG 1300 (1373)
Q Consensus 1265 VyeTredM~~A~~lak-----~giVTLDGeII~~gGsiTGG 1300 (1373)
|++ ||+.|+.++. .++|||||++++++|+||||
T Consensus 124 v~~---dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 124 VCN---NMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp EES---SHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred EEC---CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECC
T ss_conf 999---99999999974599874996998598587887359
No 4
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=1.00 E-value=1 Score=165.54 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=136.1
Q ss_pred CCCCEEEECCCCEEECCCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEE
Q ss_conf 78870141122133146124347876420200124796367888999973311885100001354531176669905897
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 1189 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~GR~TFL 1189 (1373)
.+.|++|.|++|++|++.|..| ++.+|| ..+.+|||+++++++.++.|+ ++...||+||+
T Consensus 40 ~~~g~~g~l~~li~v~~~~e~A-ve~aLg-~~l~~ivv~~~~~a~~~i~~l------------------k~~~~gr~~~l 99 (213)
T 1gxl_A 40 RFPGLVDVVSNLIEVDEKYSLA-VSVLLG-GTAQNIVVRNVDTAKAIVEFL------------------KQNEAGRVTIL 99 (213)
T ss_dssp SCTTEEEEGGGTCBCCHHHHHH-HHHHHG-GGGGCEEESSHHHHHHHHHHH------------------HHHTCEEEEEE
T ss_pred HHCCCCEEHHHEEEECHHHHHH-HHHHHH-HHHCEEEECCHHHHHHHHHHH------------------HHCCCCCEEEE
T ss_conf 5089731334205408999999-999987-865679989899999999999------------------85699825998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECH
Q ss_conf 51797889999999981001359999999999999707987123213622321111368872585999860274999113
Q 000648 1190 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR 1269 (1373)
Q Consensus 1190 PLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LLGrllVyeTr 1269 (1373)
|++.+++... . . +.+ ..++|+++++.++|++|+.+. .++.++||+++|++
T Consensus 100 pl~~~~~~~~--~--~---------~~~---~~~~g~~~~~~d~v~~~~~~~------------~~~~~~lg~~~vv~-- 149 (213)
T 1gxl_A 100 PLDLIDGSFN--R--I---------SGL---ENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVE-- 149 (213)
T ss_dssp ETTTSCCCCC--C--C---------TTG---GGSTTEEEEGGGGCBCCSTTH------------HHHHHHSSSEEEES--
T ss_pred ECHHCCCCCC--C--C---------HHH---HCCCCCHHHHHHHHCCCHHHH------------HHHHHHHCCEEEEC--
T ss_conf 7311278875--2--0---------011---047971778988804878999------------99999809989998--
Q ss_pred HCHHHHHHHCC---C--CEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 23999997602---8--579804843206842882468986555643344525899999999999999
Q 000648 1270 KDMIEAHTCIR---H--GAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLE 1332 (1373)
Q Consensus 1270 edM~~A~~lak---~--giVTLDGeII~~gGsiTGGs~~~~~kf~~s~lsrk~Ei~eLe~qlee~k~k 1332 (1373)
|++.|..++. . .+||+||++++++|+|+||+.. ...++++++.++.+++.++++++.+
T Consensus 150 -~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~~----~~~~~l~~~~el~~l~~~l~~~~~~ 212 (213)
T 1gxl_A 150 -TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREE----RSSNVFERRIKLKHLEQEMEETERQ 212 (213)
T ss_dssp -SHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCCS----SCCCTTHHHHHHHHHHHHHC-----
T ss_pred -CHHHHHHHHHHCCCCCEEEECCCEEECCCCEEECCCCC----CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf -99999999984599805995499698689069889876----6654545999999999999998831
No 5
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=163.44 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCC-EEEECCCCEEE-CCCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEE
Q ss_conf 887-01411221331-4612434787642020012479636788899997331188510000135453117666990589
Q 000648 1111 MED-VVGPVALIGTV-CTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLV 1188 (1373)
Q Consensus 1111 l~G-IiGvVAeLi~V-~d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~GR~TF 1188 (1373)
++| |+|.|++|++| ++.|..| ++.+|| ..+.+|||++.++++.++.|+ ++...||+||
T Consensus 51 ~~g~v~G~l~dli~v~~~~ye~A-ve~aLG-~~l~~iVV~~~~~a~~~i~~L------------------k~~~~Gr~tf 110 (233)
T 2wd5_A 51 YPGSVYGRLIDLCQPTQKKYQIA-VTKVLG-KNMDAIIVDSEKTGRDCIQYI------------------KEQRGEPETF 110 (233)
T ss_dssp SGGGEEEEHHHHEEESSGGGHHH-HHHHHG-GGGSCEEESCHHHHHHHHHHH------------------HHTTCCCEEE
T ss_pred CCCCEEEEHHHHCEECCHHHHHH-HHHHHH-HHHCEEEECCHHHHHHHHHHH------------------HHCCCCCEEE
T ss_conf 89986666789512286899999-999988-865579989899999999999------------------8659997179
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEE
Q ss_conf 751797889999999981001359999999999999707987123213-6223211113688725859998602749991
Q 000648 1189 ICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYK 1267 (1373)
Q Consensus 1189 LPLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~l-D~k~~~~~T~~g~GLRetLfy~LLGrllVye 1267 (1373)
+|++.+++... +. .++ .++|+ ..+.++|++ ++.+. .+++++||+++|++
T Consensus 111 lpl~~i~~~~~----~~----------~~~---~~~g~-~~l~dlV~~~~~~~~------------~~~~~~Lg~~~vv~ 160 (233)
T 2wd5_A 111 LPLDYLEVKPT----DE----------KLR---ELKGA-KLVIDVIRYEPPHIK------------KALQYACGNALVCD 160 (233)
T ss_dssp EETTTCCCCCC----CG----------GGG---GCSSC-EESGGGEEESSGGGH------------HHHHHHTTTCEEES
T ss_pred EECCCCCCCCC----CH----------HCC---CCCCC-HHHHHHHHCCCHHHH------------HHHHHHHCCEEEEC
T ss_conf 97731366775----21----------105---87884-478876517868899------------99999929989999
Q ss_pred CHHCHHHHHHHCC-----CCEEEECCCEECCCCEEEECCC
Q ss_conf 1323999997602-----8579804843206842882468
Q 000648 1268 TRKDMIEAHTCIR-----HGAVSLDGGILKEDGIISLGCG 1302 (1373)
Q Consensus 1268 TredM~~A~~lak-----~giVTLDGeII~~gGsiTGGs~ 1302 (1373)
|++.|..++. ..+|||||++++++|+|+||+.
T Consensus 161 ---dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~~ 197 (233)
T 2wd5_A 161 ---NVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGAS 197 (233)
T ss_dssp ---SHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECHH
T ss_pred ---CHHHHHHHHHHCCCCCEEEECCCEEEECCEEEECCCC
T ss_conf ---9999999998469981699569879808926868995
No 6
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=1.00 E-value=1 Score=158.68 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=131.2
Q ss_pred CCCCEEEECCCCEEECCCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC-CCCEEE
Q ss_conf 7887014112213314612434787642020012479636788899997331188510000135453117666-990589
Q 000648 1110 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSI-DGRYLV 1188 (1373)
Q Consensus 1110 ~l~GIiGvVAeLi~V~d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~-~GR~TF 1188 (1373)
..+|++|.|++|++|++.|..| ++.+|| ..+.+|||+++++++.++.|+ ++.. .||+||
T Consensus 45 ~~~g~~g~l~dli~v~~~~e~A-ve~aLG-~~l~~iVV~~~~~a~~~i~~l------------------~~~~~~gr~tf 104 (213)
T 2wd5_B 45 VQNGYHGIVMNNFECEPAFYTC-VEVTAG-NRLFYHIVDSDEVSTKILMEF------------------NKMNLPGEVTF 104 (213)
T ss_dssp HHTTEEEEGGGSEECCGGGHHH-HHHHHT-TGGGCEEESCHHHHHHHHHHH------------------HHTTCCCCEEE
T ss_pred CCCCCEEEHHHHCCCCHHHHHH-HHHHHH-HHHHEEEECCHHHHHHHHHHH------------------HHCCCCCCEEE
T ss_conf 6787625699960667889999-999974-776278989899999999999------------------85799861699
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC
Q ss_conf 75179788999999998100135999999999999970798712321362232111136887258599986027499911
Q 000648 1189 ICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKT 1268 (1373)
Q Consensus 1189 LPLd~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LLGrllVyeT 1268 (1373)
+|++.+++... ..| ..+|+++ +.++|++|+.+. .+++++||+++|++
T Consensus 105 lpl~~~~~~~~----------------~~~---~~~~~~~-l~~~v~~~~~~~------------~~~~~~l~~~~vv~- 151 (213)
T 2wd5_B 105 LPLNKLDVRDT----------------AYP---ETNDAIP-MISKLRYNPRFD------------KAFKHVFGKTLICR- 151 (213)
T ss_dssp EETTTCCCCCC----------------CCC---CCSSEEE-GGGGCEECGGGH------------HHHHHHHTTEEEES-
T ss_pred EECCCCCCCCC----------------CCC---CCCCCEE-HHHHCCCCHHHH------------HHHHHHCCCEEEEC-
T ss_conf 97844675667----------------877---7788333-998855768899------------99999819989999-
Q ss_pred HHCHHHHHHHCC---CCEEEECCCEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 323999997602---857980484320684288246898655564334452589999999999999
Q 000648 1269 RKDMIEAHTCIR---HGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKL 1331 (1373)
Q Consensus 1269 redM~~A~~lak---~giVTLDGeII~~gGsiTGGs~~~~~kf~~s~lsrk~Ei~eLe~qlee~k~ 1331 (1373)
|++.|..++. ..+|||||++++++|+|+||+.. . ..+.++++.++.+++.++++++.
T Consensus 152 --~l~~A~~l~~~~~~~~VTldG~~~~~~G~~tgG~~~---~-~~~~l~~~~~l~~l~~~l~~~~~ 211 (213)
T 2wd5_B 152 --SMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYD---T-RKSRLELQKDVRKAEEELGELEA 211 (213)
T ss_dssp --SHHHHHHHHHHSSCEEECTTCCEECTTSCEEECCCC---C-C---HHHHHHHHHHC--------
T ss_pred --CHHHHHHHHHHCCCEEEECCCCEECCCEEEECCCCC---C-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --999999998754965996998088798478799997---7-75676899999999999999984
No 7
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=1.00 E-value=1 Score=157.96 Aligned_cols=141 Identities=24% Similarity=0.278 Sum_probs=119.0
Q ss_pred CCCEEEECCCCEEECCCHHHHHHHHHHHHCHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 88701411221331461243478764202001247963678889999733118851000013545311766699058975
Q 000648 1111 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC 1190 (1373)
Q Consensus 1111 l~GIiGvVAeLi~V~d~ylsAlLseyLGietmL~IVvks~e~AK~li~YLkeg~Id~~~~lh~~~~s~kk~~~GR~TFLP 1190 (1373)
..|++|.|++|++|++.|+.| ++.+|| +.+.+|||++++.++.++.|+ +++..||+||+|
T Consensus 29 ~~g~~g~l~~li~v~~~~e~A-ve~aLG-~~l~~ivv~~~~~a~~~i~~l------------------k~~~~gr~tflp 88 (186)
T 1gxj_A 29 FPGLVDVVSNLIEVDEKYSLA-VSVLLG-GTAQNIVVRNVDTAKAIVEFL------------------KQNEAGRVTILP 88 (186)
T ss_dssp CTTEEEEHHHHCBCCGGGHHH-HHHHHG-GGGGCEEESSHHHHHHHHHHH------------------HHHTCCCEEEEE
T ss_pred HCCCCEEHHHEECCCHHHHHH-HHHHHH-HHHHEEEECCHHHHHHHHHHH------------------HHCCCCCEEEEE
T ss_conf 089622453322338899999-999988-865189989899999999999------------------856998369987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECHH
Q ss_conf 17978899999999810013599999999999997079871232136223211113688725859998602749991132
Q 000648 1191 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 1270 (1373)
Q Consensus 1191 Ld~IRP~~~~~~~~dpQrkL~L~~P~L~~g~~p~GFIGyAVNLI~lD~k~~~~~T~~g~GLRetLfy~LLGrllVyeTre 1270 (1373)
++.+++... . . +.+ ..++|++++|.++|++|+++. .++.++||+++|++
T Consensus 89 l~~~~~~~~--~--~---------~~~---~~~~g~~~~~~dlv~~~~~~~------------~~~~~~lg~~~v~~--- 137 (186)
T 1gxj_A 89 LDLIDGSFN--R--I---------SGL---ENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVE--- 137 (186)
T ss_dssp TTTCCCCCC--C--C---------TTG---GGSTTEEEEHHHHCBCCGGGH------------HHHHHHHTTCEEES---
T ss_pred CCCCCCCCC--C--C---------HHC---CCCCCCHHHHHHHCCCCHHHH------------HHHHHHCCCEEEEC---
T ss_conf 332577766--2--0---------110---268971578988715878999------------99999849989999---
Q ss_pred CHHHHHHHCC---C--CEEEECCCEECCCCEEEECCC
Q ss_conf 3999997602---8--579804843206842882468
Q 000648 1271 DMIEAHTCIR---H--GAVSLDGGILKEDGIISLGCG 1302 (1373)
Q Consensus 1271 dM~~A~~lak---~--giVTLDGeII~~gGsiTGGs~ 1302 (1373)
|++.|..++. . ++|||||++++++|+|+||+.
T Consensus 138 ~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 138 TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp CHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred CHHHHHHHHHHCCCCCEEEECCCEEECCCEEEECCCC
T ss_conf 9999999998449986499689809869977978988
No 8
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=1.00 E-value=1 Score=26.88 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCEEEEECCCEEEEEEE
Q ss_conf 53333478753015540746999840
Q 000648 37 PFFGMFGYGGPIASMHLGRRALVSSK 62 (1373)
Q Consensus 37 ~~~g~fG~Gg~~A~~~LG~~~~VssK 62 (1373)
.++|+||+|-. ++|-++.+++|.||
T Consensus 173 ~~IGqFGVGFy-SaFmVAdkV~V~Sk 197 (272)
T 3ied_A 173 NLIGQFGVGFY-SSFLVSNRVEVYTK 197 (272)
T ss_dssp TCGGGSCCGGG-GGGGTEEEEEEEEE
T ss_pred CCCCCCCCEEH-EEECCCCEEEEEEC
T ss_conf 31476560001-00005888999986
No 9
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=1.00 E-value=1 Score=24.63 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCC
Q ss_conf 3466765125432111222--56889999766533334787530155407469998402245
Q 000648 7 NSIVKWGKMGASLHRASKA--QGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS 66 (1373)
Q Consensus 7 ~sl~kW~tmG~S~~~~~~s--~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~s 66 (1373)
+-..+|||++.|-.+.... ++- + .-..++|.||+|= +++|.++.+++|.||..+.
T Consensus 108 dL~~~LgtIa~Sgtk~f~e~l~~~-~---~d~~~IGqFGVGF-ySaf~vadkV~V~Sk~~~~ 164 (281)
T 3peh_A 108 DLINNLGTIAKSGTSNFLEAISKS-G---GDMSLIGQFGVGF-YSAFLVADKVIVYTKNNDD 164 (281)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHT-T---CCSTTTTTTTCGG-GGGGGTEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-C---CCCCCCCCCCCCC-HHHCCCCCEEEEEEECCCC
T ss_conf 999999998767656377764202-4---5512004557320-1000016879999940788
No 10
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=1.00 E-value=1 Score=24.03 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=34.4
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCC
Q ss_conf 6676512543211122256889999766533334787530155407469998402245
Q 000648 9 IVKWGKMGASLHRASKAQGIGGKPPYLTPFFGMFGYGGPIASMHLGRRALVSSKTKVS 66 (1373)
Q Consensus 9 l~kW~tmG~S~~~~~~s~~igg~~p~~~~~~g~fG~Gg~~A~~~LG~~~~VssKtk~s 66 (1373)
..+|++++-|-.+....+-. +++ -..++|.||+|=.. +|.++.+++|.||..+.
T Consensus 103 ~~~LgtIA~Sgtk~f~e~~~-~~~--d~~~IGqFGvGfyS-af~vadkv~V~Sk~~~~ 156 (239)
T 3nmq_A 103 INNLGTIAKSGTKAFMEALQ-AGA--DISMIGQFGVGFYS-AYLVAEKVVVITKHNDD 156 (239)
T ss_dssp HTHHHHHHHHHHHHHHHHHH-TTC--CGGGGGGGTCGGGG-GGGTEEEEEEEEECTTS
T ss_pred HHHHHHHHCCCCHHHHHHHC-CCC--CCCCCCCCCCCCCC-CCCCCCEEEEEEEECCC
T ss_conf 99998882253242455520-367--74434666754020-12658878999940788
Done!