BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000649
(1373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 351/1047 (33%), Positives = 544/1047 (51%), Gaps = 72/1047 (6%)
Query: 89 ESTFLASLMPKKEIGADRFVEANPQFDGRGVVIAIFDSGVDPAAAGLQVTSDGKP-KILD 147
ES +L+PK E G F++ P++DGR V IAIFDSGVDP A GL+ DGK K+++
Sbjct: 8 ESFPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLETLCDGKTVKVIE 67
Query: 148 VIDCTGSGDIDTSTVIKADSDGCIRGASGATLVVNSSWK----NPSGEWHVGYKLVYELF 203
DC+G GD+D + D +G I+G SG +L ++ +P VG K +L
Sbjct: 68 RYDCSGCGDVDXKKKVTPDENGNIKGLSGNSLKLSPELXALNTDPEKAVRVGLKSFSDLL 127
Query: 204 TESLTSRLKSERK-KKWEEKNQEAIAKAVKHLDEFNQKHKKVEDGKL----KRVREDLQN 258
+ + + ++ K K W++ ++ A A A + + EF ++ E KL K ++E+L
Sbjct: 128 PSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPG-EASKLPWDKKILKENLDF 186
Query: 259 RVDILRKQAESYDDKGPVVDAVVWHDGEVWRVALDTQSLEDEPDHGKLADFAPLTNYKTE 318
++ L + Y D D +++ + W +DT D ++ +++
Sbjct: 187 ELEXLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYS-------- 238
Query: 319 RKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQ 378
R H + D + NV+DEGNVL +V SSPHGTHV+ IA+ N ++G+AP A+
Sbjct: 239 RTHETRNVDDFLSISVNVHDEGNVLEVVGXSSPHGTHVSSIASG-NHSSRDVDGVAPNAK 297
Query: 379 LISCKIGDTRLGSMETGTGLTRAFIAAVE-----HKCDLINMSYGEPTLLPDYGRFIDLV 433
++S IGD RLGS ETGT L RA E + D+IN SYGE + GR +L
Sbjct: 298 IVSXTIGDGRLGSXETGTALVRAXTKVXELCRDGRRIDVINXSYGEHANWSNSGRIGELX 357
Query: 434 NEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS-SIIAVGAYVSPAMAAGAHCVVEPPSE 492
NE VNK+ +V+V+SAGN GPAL TVG P S S+I VGAYVSP + + E
Sbjct: 358 NEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQXXEAEYAMREK-LP 416
Query: 493 GLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLI 552
G YTW+SR P DG GV + APGGA+A V +T + L NGTS A+P G +ALLI
Sbjct: 417 GNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQFTXSKSQLXNGTSXAAPHVAGAVALLI 476
Query: 553 SAMKANAIPVSPYTVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYEYVQQYGNVP--C 610
S +K I SPY++++A+ T+ +G + D + GHGLL V+KA+E++ ++
Sbjct: 477 SGLKQQNIEYSPYSIKRAISVTATKLGYV--DPFAQGHGLLNVEKAFEHLTEHRQSKDNX 534
Query: 611 VSYQIKINQSGKLTPTYRGIYLRDAGASQQSTEWTVQVEPKFHEDA-SNLEELVPFEECI 669
+ + +++ + +GI+LR G + S ++ V +EP F+ D ++ ++ F +
Sbjct: 535 LRFSVRVGNNAD-----KGIHLRQ-GVQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRL 588
Query: 670 ELHSTDKAVLRAPEYLLLTHNGRSFNVVVDPTNLEDGLHYYEIYGIDCKAPGRGPLFRIP 729
L ++ V + +L L++ RS V VDPT L+ G+H I D +G LF IP
Sbjct: 589 NLIASQPWV-QCGAFLDLSYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIP 647
Query: 730 VTIIKP--------TAVVKRPPLVSFSRMSFLPGQIERRFIEVPLGATWVEATMRTSGFD 781
VT+++P T V + + + F P I+R FI VP ATW E R + D
Sbjct: 648 VTVVQPHVLESDQNTPVFEPASSKGDNSVEFQPNTIQRDFILVPERATWAELRXRIT--D 705
Query: 782 TTR-----RFFVDTVQVCPLQ--RPLKWENVVTFSSPVSKNFAFPVVGGQTMELAIAQFW 834
R +FFV T Q+ P Q R L+ +V+ S AF V G+ +EL IA++W
Sbjct: 706 PNRGEDIGKFFVHTNQLLPKQSCRKLETXKIVSVGSENESIXAFKVKSGRILELCIAKYW 765
Query: 835 SSGMGSHETTIVDFEIEFHGI-AVNKDEVLLDGSEAPVRIDAEALLTSERLAPAAVLNKI 893
S+ SH + + + F G+ A N + + +++ EAL+ +E + P L
Sbjct: 766 SNYGQSH----LKYSLRFRGVEAHNPNAYVXHAGRGIHKLEIEALV-AEDVQPQLQLKNA 820
Query: 894 RVPCRPIETKLTVLPTNRDKLPSGKQILALTLTYKFKLEDGAEVKPQIPLLNNRIYDTKF 953
V +P E K++ L RD +P G+Q+ L + + A+V P+ N+ +Y+ +F
Sbjct: 821 EVVLKPTEAKISPLSATRDVIPDGRQVYQNLLAFNLNVAKAADVSIYAPIFNDLLYEAEF 880
Query: 954 ESQFYMISDTNKRVYAQGDVYP--DYSKLPKGDYNLQLYLRHDNVQYLEKMKQLVLFIER 1011
ESQ + + D NK + A GD + ++KL KG+Y ++L +RH+ LEK+ + L
Sbjct: 881 ESQXWXLFDANKALVATGDAHSHTSFTKLDKGEYTIRLQVRHEKRDLLEKISEANLVASF 940
Query: 1012 KLEEKDVIRLSFFSQPDGPIMGNGTYKSSILVPGKKEAFYLSPPGKDKLPK-NSPQGSIL 1070
KL + L F+ + I+G Y SS L + Y++P +++L K N P
Sbjct: 941 KLTSP--LTLDFYENYNQCIVGGRKYVSSPLRLSTR-VLYIAPITQERLTKANLPAQCAW 997
Query: 1071 LGAISYGKLSFQGQEGGKNPQKNPVSY 1097
L G L F E G+ ++P +Y
Sbjct: 998 LS----GNLVFPQDEVGRRVAQHPFTY 1020
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 49/260 (18%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G+G A ++ +
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPNVSLYAIKVLNS------SGSGSYSAIVSGI 110
Query: 407 E----HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSG--PALNTVGA 460
E + D+INMS G P+ + +D + +V V++AGNSG + NT+G
Sbjct: 111 EWATQNGLDVINMSLGGPSGSTALKQAVDKAYAS----GIVVVAAAGNSGNSGSQNTIGY 166
Query: 461 PGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAV 520
P S+IAVGA S A ++SS G + + APG V
Sbjct: 167 PA-KYDSVIAVGAVDSNKNRA---------------SFSSVGSELE------VMAPG--V 202
Query: 521 APVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ ST+ +NGTSMASP G AL++S +S VR + +T+ +G
Sbjct: 203 SVYSTYPSNTYTSLNGTSMASPHVAGAAALILSKYP----TLSASQVRNRLSSTATNLG- 257
Query: 581 LAEDKLSTGHGLLQVDKAYE 600
D G GL+ V+ A +
Sbjct: 258 ---DSFYYGKGLINVEAAAQ 274
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 85/261 (32%), Positives = 118/261 (45%), Gaps = 53/261 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D S HGTHVAG A N +L G+AP A L + K+ D+ TG+G I +E
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL-GVAPSASLYAVKVLDS------TGSGQYSWIINGIE 112
Query: 408 ----HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGP--ALNTVGAP 461
+ D+INMS G PT +V++AV+ +V ++AGN G + +TVG P
Sbjct: 113 WAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSG-IVVAAAAGNEGSSGSTSTVGYP 168
Query: 462 GGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVA 521
S+ IAVGA S A ++SS G D + APG V+
Sbjct: 169 AKYPST-IAVGAVNSANQRA---------------SFSSAGSELD------VMAPG--VS 204
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMK--ANAIPVSPYTVRKAVENTSVPIG 579
ST NGTSMA+P G AL++S NA VR +E+T+ +G
Sbjct: 205 IQSTLPGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNA------QVRDRLESTATYLG 258
Query: 580 ALAEDKLSTGHGLLQVDKAYE 600
+ G GL+ V A +
Sbjct: 259 S----SFYYGKGLINVQAAAQ 275
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 70.5 bits (171), Expect = 6e-12, Method: Composition-based stats.
Identities = 84/305 (27%), Positives = 135/305 (44%), Gaps = 38/305 (12%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D++ HGTHVAG G+AP A L+ I D+ G + L F A
Sbjct: 64 DTNGHGTHVAGSVLGNGSTN---KGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYS 120
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ S+G + Y V++ V K+ + + +AGN GP T+ AP GT+ +
Sbjct: 121 AGARIHTNSWG-AAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAP-GTAKN 178
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYT--WSSRGPTADGDLGVCISAPG-------G 518
I VGA + + G++ ++ + + +SSRGPT DG + + APG
Sbjct: 179 AITVGATENLRPSFGSY------ADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARS 232
Query: 519 AVAPVST-WTLQ--RRMLMNGTSMASPSACGGIALLISA-MKANAIPVSPYTVRKAVENT 574
++AP S+ W + M GTSMA+P G +A L +K I P ++ A+
Sbjct: 233 SLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG 292
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQYGNVPCVSYQIKINQSGKLTPTYRGIYLRD 634
+ IG L + G G + +DK+ V+Y +N+S L+ + + Y
Sbjct: 293 AADIG-LGYPNGNQGWGRVTLDKSLN----------VAY---VNESSSLSTSQKATYSFT 338
Query: 635 AGASQ 639
A A +
Sbjct: 339 ATAGK 343
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 332 FVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS 391
FV N YD D + HGTHVAGIA A + G+AP ++++ + D R GS
Sbjct: 59 FVDNDYDP-------MDLNNHGTHVAGIAAAETNNATGIAGMAPNTRILAVRALD-RNGS 110
Query: 392 METGTGLTRAFIAAVEHKCDLINMSYG---EPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
T + + A I A + ++IN+S G T L + VN A NK +V V++A
Sbjct: 111 -GTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN------AVNYAWNKGSVV-VAAA 162
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN+G + T P + ++IAVGA A ++S+ G D
Sbjct: 163 GNNGSS--TTFEPA-SYENVIAVGAVDQYDRLA---------------SFSNYGTWVD-- 202
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVR 568
+ APG V VST T R M+GTSMASP G ALL S + N +R
Sbjct: 203 ----VVAPG--VDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGRNN------IEIR 250
Query: 569 KAVENTS 575
+A+E T+
Sbjct: 251 QAIEQTA 257
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 37/265 (13%)
Query: 347 TDSSPHGTHVAGIATA-FNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAA 405
TD + HGTHVAG A A ++ + G+AP A L + K+ +++G+G + AA
Sbjct: 66 TDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKV------LLDSGSGYSDDIAAA 119
Query: 406 VEHKCD---------LINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALN 456
+ H D +I+MS G + VN A +K L+ V++AGNSG +
Sbjct: 120 IRHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLI-VAAAGNSGYSQG 175
Query: 457 TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516
T+G PG ++ IAV A + G + V + S G S+ G + + ISAP
Sbjct: 176 TIGYPGALPNA-IAVAA-LENVQQNGTYRVADYSSRGY---ISTAGDYVIQEGDIEISAP 230
Query: 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576
G +V STW ++GTSMA+P G L + + A +S +R ++ +
Sbjct: 231 GSSV--YSTWYNGGYNTISGTSMATPHVSG----LAAKIWAENPSLSNTQLRSNLQERAK 284
Query: 577 PI------GALAEDKLSTGHGLLQV 595
+ GA D ++G G +V
Sbjct: 285 SVDIKGGYGAAIGDDYASGFGFARV 309
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 84/261 (32%), Positives = 117/261 (44%), Gaps = 53/261 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D S HGTHVAG A N +L G+AP A L + K+ D+ TG+G I +E
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL-GVAPSASLYAVKVLDS------TGSGQYSWIINGIE 112
Query: 408 ----HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGP--ALNTVGAP 461
+ D+INMS G PT +V++AV+ +V ++AGN G + +TVG P
Sbjct: 113 WAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSG-IVVAAAAGNEGSSGSTSTVGYP 168
Query: 462 GGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVA 521
S+ IAVGA S A ++SS G D + APG V+
Sbjct: 169 AKYPST-IAVGAVNSSNQRA---------------SFSSVGSELD------VMAPG--VS 204
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMK--ANAIPVSPYTVRKAVENTSVPIG 579
ST NGT MA+P G AL++S NA VR +E+T+ +G
Sbjct: 205 IQSTLPGGTYGAYNGTXMATPHVAGAAALILSKHPTWTNA------QVRDRLESTATYLG 258
Query: 580 ALAEDKLSTGHGLLQVDKAYE 600
+ G GL+ V A +
Sbjct: 259 ----NSFYYGKGLINVQAAAQ 275
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 83/261 (31%), Positives = 117/261 (44%), Gaps = 53/261 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D S HGTHVAG A N +L G++P A L + K+ D+ TG+G I +E
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL-GVSPSASLYAVKVLDS------TGSGQYSWIINGIE 112
Query: 408 ----HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPA--LNTVGAP 461
+ D+INMS G PT +V++AV+ +V ++AGN G + +TVG P
Sbjct: 113 WAISNNMDVINMSLGGPT---GSTALKTVVDKAVSSG-IVVAAAAGNEGSSGSTSTVGYP 168
Query: 462 GGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVA 521
S+I AVGA S A ++SS G D + APG V+
Sbjct: 169 AKYPSTI-AVGAVNSSNQRA---------------SFSSAGSELD------VMAPG--VS 204
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMK--ANAIPVSPYTVRKAVENTSVPIG 579
ST NGT MA+P G AL++S NA VR +E+T+ +G
Sbjct: 205 IQSTLPGGTYGAYNGTCMATPHVAGAAALILSKHPTWTNA------QVRDRLESTATYLG 258
Query: 580 ALAEDKLSTGHGLLQVDKAYE 600
+ G GL+ V A +
Sbjct: 259 ----NSFYYGKGLINVQAAAQ 275
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 37/265 (13%)
Query: 347 TDSSPHGTHVAGIATA-FNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAA 405
TD + HGTHVAG A A ++ + G+AP A L + K+ +++G+G + AA
Sbjct: 66 TDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKV------LLDSGSGYSDDIAAA 119
Query: 406 VEHKCD---------LINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALN 456
+ H D +I+MS G + VN A +K L+ V++AGNSG +
Sbjct: 120 IRHAADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLI-VAAAGNSGYSQG 175
Query: 457 TVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAP 516
T+G PG ++ IAV A + G + V + S G S+ G + + ISAP
Sbjct: 176 TIGYPGALPNA-IAVAA-LENVQQNGTYRVADYSSRGY---ISTAGDYVIQEGDIEISAP 230
Query: 517 GGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSV 576
G +V STW ++GT MA+P G L + + A +S +R ++ +
Sbjct: 231 GSSV--YSTWYNGGYNTISGTXMATPHVSG----LAAKIWAENPSLSNTQLRSNLQERAK 284
Query: 577 PI------GALAEDKLSTGHGLLQV 595
+ GA D ++G G +V
Sbjct: 285 SVDIKGGYGAAIGDDYASGFGFARV 309
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 41/255 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPCASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAA-AGNEGTSGSS-STVGYP-AKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSICST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDK 585
+ +GTSMASP G AL++S + VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAKSGTSMASPHVAGAAALILSKHPN----WTNTQVRSSLENTTTKLG----DS 260
Query: 586 LSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 261 FYYGKGLINVQAAAQ 275
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 38/305 (12%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D++ HGTHVAG G+AP A L+ I D+ G + L F A
Sbjct: 64 DTNGHGTHVAGSVLGNGSTN---KGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYS 120
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ S+G + Y V++ V K+ + + +AGN GP T+ AP GT+ +
Sbjct: 121 AGARIHTNSWG-AAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAP-GTAKN 178
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYT--WSSRGPTADGDLGVCISAPG-------G 518
I VGA + + G++ ++ + + +SSRGPT DG + + APG
Sbjct: 179 AITVGATENLRPSFGSY------ADNINHVAQFSSRGPTKDGRIKPDVMAPGTFILSARS 232
Query: 519 AVAPVST-WTLQ--RRMLMNGTSMASPSACGGIALLISA-MKANAIPVSPYTVRKAVENT 574
++AP S+ W + GTS A+P G +A L +K I P ++ A+
Sbjct: 233 SLAPDSSFWANHDSKYAYXGGTSXATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG 292
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQYGNVPCVSYQIKINQSGKLTPTYRGIYLRD 634
+ IG L + G G + +DK+ V+Y +N+S L+ + + Y
Sbjct: 293 AADIG-LGYPNGNQGWGRVTLDKSLN----------VAY---VNESSSLSTSQKATYSFT 338
Query: 635 AGASQ 639
A A +
Sbjct: 339 ATAGK 343
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 348 DSSPHGTHVAGIATAFNP-EEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
D + HGTHVA IA G+APGA+L+ K+ + + G+G I V
Sbjct: 176 DDNGHGTHVASIAAGTGAASNGKYKGMAPGAKLVGIKVLNGQ------GSGSISDIINGV 229
Query: 407 E--------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTV 458
+ + +IN+S G VN A + LV V +AGNSGP TV
Sbjct: 230 DWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDA-GLVVVVAAGNSGPNKYTV 288
Query: 459 GAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGG 518
G+P +S +I VG A + V+ +SSRGPTAD L + APG
Sbjct: 289 GSP-AAASKVITVG-------AVDKYDVITD--------FSSRGPTADNRLKPEVVAPGN 332
Query: 519 AVAPVSTWTLQRRMLMN-------GTSMASPSACGGIALLISA 554
+ +N GT+MA+P G ALL+ A
Sbjct: 333 WIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQA 375
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 77/255 (30%), Positives = 112/255 (43%), Gaps = 41/255 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPCASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAA-AGNEGTSGSS-STVGYP-AKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDK 585
+ +GT MASP G AL++S + VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYSGTXMASPHVAGAAALILSKHPN----WTNTQVRSSLENTTTKLG----DS 260
Query: 586 LSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 261 FYYGKGLINVQAAAQ 275
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 116/256 (45%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 260 SFYYGKGLINVEAAAQ 275
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 115/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 80/260 (30%), Positives = 117/260 (45%), Gaps = 28/260 (10%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD HGTHVAG A A + G+AP A L + K+ LG + G+G A+
Sbjct: 66 TDRQGHGTHVAGSALANGGTGSGVYGVAPEADLWAYKV----LG--DDGSGYADDIAEAI 119
Query: 407 EHKCD---------LINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNT 457
H D +INMS G + + V+ A +K L+ +++AGNSGP +
Sbjct: 120 RHAGDQATALNTKVVINMSLGSSG---ESSLITNAVDYAYDKGVLI-IAAAGNSGPKPGS 175
Query: 458 VGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG 517
+G PG ++ A + + G + V + S G + T + GD V ISAPG
Sbjct: 176 IGYPGALVNA--VAVAALENTIQNGTYRVADFSSRGHKRT-AGDYVIQKGD--VEISAPG 230
Query: 518 GAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLI--SAMKANAIPVSPYTVRKAVENTS 575
AV STW ++GTSMASP A G A + S +N R +V +
Sbjct: 231 AAV--YSTWFDGGYATISGTSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDIL 288
Query: 576 VPIGALAEDKLSTGHGLLQV 595
A + D +++G G +V
Sbjct: 289 SGNSAGSGDDIASGFGFAKV 308
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 115/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGTSMASP G AL++S P T VR +++NT+ +G D
Sbjct: 209 LPGNKYGAYNGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLQNTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGT MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 41/250 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDK 585
+ NGTSMASP G AL++S + VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTSMASPHVAGAAALILSKHPN----WTNTQVRSSLENTTTKLG----DS 260
Query: 586 LSTGHGLLQV 595
G GL+ V
Sbjct: 261 FYYGKGLINV 270
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGT MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 110/254 (43%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 59 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 115
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S GNSG + NT+G P
Sbjct: 116 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GNSG-STNTIGYPA-KYD 172
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 173 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 209
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 210 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 261
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 262 YYGKGLINVEAAAQ 275
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 110/254 (43%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 114
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S GNSG + NT+G P
Sbjct: 115 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GNSG-STNTIGYPA-KYD 171
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 172 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 208
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 260
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 261 YYGKGLINVEAAAQ 274
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 110/254 (43%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 114
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S GNSG + NT+G P
Sbjct: 115 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GNSG-STNTIGYPA-KYD 171
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 172 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 208
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 260
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 261 YYGKGLINVEAAAQ 274
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 114
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S GNSG + NT+G P
Sbjct: 115 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GNSG-STNTIGYPA-KYD 171
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 172 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 208
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGT MASP G AL++S +S VR + +T+ +G+
Sbjct: 209 PTNTYATLNGTXMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 260
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 261 YYGKGLINVEAAAQ 274
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 115/258 (44%), Gaps = 47/258 (18%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP + L + K+ LG + G+G I +E
Sbjct: 60 DDNSHGTHVAGTVAALNNSIGVL-GVAPSSALYAVKV----LG--DAGSGQYSWIINGIE 112
Query: 408 ----HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGG 463
+ D+INMS G P+ +D + + G++G + +TVG PG
Sbjct: 113 WAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GSTGSS-STVGYPG- 169
Query: 464 TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPV 523
S+IAVGA S A ++SS GP D + APG V+
Sbjct: 170 KYPSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQ 206
Query: 524 STWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALA 582
ST + NGTSMASP G AL++S P T VR +++NT+ +G
Sbjct: 207 STLPGNKYGAYNGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLQNTTTKLG--- 258
Query: 583 EDKLSTGHGLLQVDKAYE 600
D G GL+ V A +
Sbjct: 259 -DSFYYGKGLINVQAAAQ 275
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 114
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S G+SG + NT+G P
Sbjct: 115 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GSSG-STNTIGYPA-KYD 171
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 172 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 208
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 260
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 261 YYGKGLINVEAAAQ 274
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GT MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAKSGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GT MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYSGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 59 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 115
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S G+SG NT+G P
Sbjct: 116 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GSSGNT-NTIGYPA-KYD 172
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 173 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 209
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 210 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 261
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 262 YYGKGLINVEAAAQ 275
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 37/254 (14%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAV 406
TD + HGTHVAG A + +L G+AP L + K+ ++ +G + A
Sbjct: 58 TDGNGHGTHVAGTVAALDNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW--AT 114
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS 466
+ D+INMS G + + +D +S G+SG NT+G P
Sbjct: 115 TNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNS-GSSGNT-NTIGYPA-KYD 171
Query: 467 SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTW 526
S+IAVGA S + A ++SS G + + APG V ST+
Sbjct: 172 SVIAVGAVDSNSNRA---------------SFSSVGAELE------VMAPGAGV--YSTY 208
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGALAEDKL 586
+NGTSMASP G AL++S +S VR + +T+ +G+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPN----LSASQVRNRLSSTATYLGS----SF 260
Query: 587 STGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 261 YYGKGLINVEAAAQ 274
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 113/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+IN S G P+ +D + + G SG + +TVG P G
Sbjct: 115 IANNXDVINXSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ NGTS ASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYNGTSXASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A N +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVL-GVAPCASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-AKY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIQST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAKSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A + +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALDNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPA-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIXST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A + +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALDNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPA-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSICST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAKSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 114/256 (44%), Gaps = 43/256 (16%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A + +L G+AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVAALDNSIGVL-GVAPSASLYAVKV----LGADGSGQYSWIINGIEWA 114
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P
Sbjct: 115 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPA-KY 171
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 172 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIXST 208
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 209 LPGNKYGAYSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTYLG----D 259
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 260 SFYYGKGLINVQAAAQ 275
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 41/235 (17%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D + HGTHVAG A N +L G+AP A+L + K+ LG+ G + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPSAELYAVKV----LGADGRGAISSIAQGLEWA 112
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 113 GNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG------------- 155
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
+S I+ A + AMA GA ++R + G+ I APG V ST
Sbjct: 156 ASSISYPARYANAMAVGA-----------TDQNNNRASFSQYGAGLDIVAPGVNVQ--ST 202
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ +NGTSMA+P G AL+ K S +R ++NT+ +G+
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 113/256 (44%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 106 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ VST
Sbjct: 163 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIVST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GT+MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGNKYGAKSGTAMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 251 SFYYGKGLINVEAAAQ 266
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 112/256 (43%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 106 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 163 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSICST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGNKYGAKSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 251 SFYYGKGLINVEAAAQ 266
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 112/256 (43%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG PG
Sbjct: 106 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYPG-KY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ VST
Sbjct: 163 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSIVST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GT+MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGNKYGAKSGTAMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 251 SFYYGKGLINVQAAAQ 266
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 41/235 (17%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D + HGTHVAG A + +L G+AP A+L + K+ LG+ +G + + + A
Sbjct: 58 DGNGHGTHVAGTIAALDNSIGVL-GVAPSAELYAVKV----LGASGSGAISSIAQGLEWA 112
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 113 GNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG------------- 155
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
G+ PA A A V ++S G G+ I APG V ST
Sbjct: 156 -----AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--ST 202
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ +NGT MA+P G AL+ K S +R ++NT+ +G+
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP A+L + K+ + + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPSAELYAVKV--LGASGSGSVSSIAQGLEWAGN 114
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 115 NGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG--------------- 155
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWT 527
G+ PA A A V ++S G G+ I APG V ST+
Sbjct: 156 ---AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--STYP 204
Query: 528 LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+NGTSMA+P G AL+ K S +R ++NT+ +G+
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP A+L + K+ + + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPNAELYAVKV--LGASGSGSVSSIAQGLEWAGN 114
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 115 NGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG--------------- 155
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWT 527
G+ PA A A V ++S G G+ I APG V ST+
Sbjct: 156 ---AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--STYP 204
Query: 528 LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+NGTSMA+P G AL+ K S +R ++NT+ +G+
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP A+L + K+ + + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPNAELYAVKV--LGASGGGSNSSIAQGLEWAGN 114
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 115 NGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG--------------- 155
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWT 527
G+ PA A A V ++S G G+ I APG V ST+
Sbjct: 156 ---AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--STYP 204
Query: 528 LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+NGTSMA+P G AL+ K S +R ++NT+ +G+
Sbjct: 205 GSTYASLNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 106 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 163 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSICST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GT MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGNKYGAKSGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 251 SFYYGKGLINVEAAAQ 266
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 111/259 (42%), Gaps = 58/259 (22%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 57 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 102
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 103 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 159
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG VS
Sbjct: 160 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG-----VSI 193
Query: 526 WTL---QRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGAL 581
W+ + +GT MASP G AL++S P T VR ++ENT+ +G
Sbjct: 194 WSTLPGNKYGAKSGTXMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG-- 246
Query: 582 AEDKLSTGHGLLQVDKAYE 600
D G GL+ V+ A +
Sbjct: 247 --DSFYYGKGLINVEAAAQ 263
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 96/233 (41%), Gaps = 37/233 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP A+L + K+ + + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPNAELYAVKV--LGASGSGSVSSIAQGLEWAGN 114
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 115 NGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG--------------- 155
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWT 527
G+ PA A A V ++S G G+ I APG V ST+
Sbjct: 156 ---AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--STYP 204
Query: 528 LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+NGT MA+P G AL+ K S +R ++NT+ +G+
Sbjct: 205 GSTYASLNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQYSWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + + G SG + +TVG P G
Sbjct: 106 IANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNE-GTSGSS-STVGYP-GKY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S A ++SS GP D + APG V+ ST
Sbjct: 163 PSVIAVGAVDSSNQRA---------------SFSSVGPELD------VMAPG--VSICST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ +GTSMASP G AL++S P T VR ++ENT+ +G +
Sbjct: 200 LPGNKYGAKSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTTTKLG----N 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V A +
Sbjct: 251 SFYYGKGLINVQAAAQ 266
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 96/232 (41%), Gaps = 37/232 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG A N +L G+AP A+L + K+ + + + + A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPSAELYAVKV--LGASGSGSVSSIAQGLEWAGN 114
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
+ + N+S G P+ VN A ++ LV V+++GNSG
Sbjct: 115 NGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNSG--------------- 155
Query: 468 IIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVSTWT 527
G+ PA A A V ++S G G+ I APG V ST+
Sbjct: 156 ---AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--STYP 204
Query: 528 LQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIG 579
+NGTSMA+P G AL+ K S +R ++NT+ +G
Sbjct: 205 GSTYASLNGTSMATPHVAGVAALV----KQKNPSWSNVQIRNHLKNTATGLG 252
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 64/235 (27%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETG--TGLTRAFIAA 405
D + HGTHVAG A + +L G+AP A+L + K+ LG+ +G + + + A
Sbjct: 58 DGNGHGTHVAGTIAALDNSIGVL-GVAPSAELYAVKV----LGASGSGAISSIAQGLEWA 112
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + N+S G P+ VN A ++ LV V+++GN G
Sbjct: 113 GNNGMHVANLSLGSPS---PSATLEQAVNSATSRGVLV-VAASGNEG------------- 155
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
G+ PA A A V ++S G G+ I APG V ST
Sbjct: 156 -----AGSIDYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--ST 202
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ +NGT MA+P G AL+ K S +R ++NT+ +G+
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 63/281 (22%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 206
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 207 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 262
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 263 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 300
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAM---KANAIPVSPY 565
+SAPG V +ST+ + GT+MA+P G +AL+ +A +PV +
Sbjct: 301 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTF 354
Query: 566 ------TVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYE 600
TVR + T+ +G D G+G+++ A +
Sbjct: 355 DDISKNTVRGILHITADALGPTGWDA-DYGYGVVRAALAVQ 394
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 63/281 (22%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 146 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 203
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 204 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 259
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 260 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 297
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAM---KANAIPVSPY 565
+SAPG V +ST+ + GT+MA+P G +AL+ +A +PV +
Sbjct: 298 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTF 351
Query: 566 ------TVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYE 600
TVR + T+ +G D G+G+++ A +
Sbjct: 352 DDISKNTVRGILHITADDLGPTGWDA-DYGYGVVRAALAVQ 391
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIAQAILG 137
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 138 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 193
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 194 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 231
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 232 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 271
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 206
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 207 PDGVADKDGDGIIAGDPDADAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 262
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 263 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 300
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 301 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 340
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 206
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 207 PDGVADKDGDGIIAGDPDDAAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 262
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 263 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 300
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 301 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 340
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 206
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 207 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 262
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 263 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 300
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 301 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 340
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 137
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 138 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 193
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 194 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 231
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 232 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 271
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 71 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 128
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 129 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 184
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 185 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 222
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 223 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 262
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 126
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 127 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 182
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 183 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 220
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT+MA+P G +AL+ +A
Sbjct: 221 ----VSAPG--VDILSTYPDDSYETLMGTAMATPHVSGVVALIQAA 260
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 120/281 (42%), Gaps = 63/281 (22%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 126
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 127 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 182
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 183 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 220
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAM---KANAIPVSPY 565
+SAPG V +ST+ + GT MA+P G +AL+ +A +PV +
Sbjct: 221 ----VSAPG--VDILSTYPDDSYETLMGTCMATPHVSGVVALIQAAYYQKYGKILPVGTF 274
Query: 566 ------TVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYE 600
TVR + T+ +G D G+G+++ A +
Sbjct: 275 DDISKNTVRGILHITADDLGPTGWDA-DYGYGVVRAALAVQ 314
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 53/226 (23%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS---METGTGLTRAFIA 404
D + HGTHV G A N + ++ G+APG Q+ S ++ D R GS + G+ +A +
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVV-GVAPGVQIYSVRVLDAR-GSGSYSDIAIGIEQAILG 126
Query: 405 --AVEHK--------------CDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSA 448
V K ++I+MS G P D D++ +A N +V V+++
Sbjct: 127 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAG-IVIVAAS 182
Query: 449 GNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
GN G + A +IAVGA S A ++S+R P
Sbjct: 183 GNEGAPSPSYPA---AYPEVIAVGAIDSNDNIA---------------SFSNRQPE---- 220
Query: 509 LGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+SAPG V +ST+ + GT MA+P G +AL+ +A
Sbjct: 221 ----VSAPG--VDILSTYPDDSYETLMGTXMATPHVSGVVALIQAA 260
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 48/260 (18%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMET--------GTGL 398
+DSS HG+HVAG A + G+A GA+++ + R G ++ G
Sbjct: 99 SDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVR-ALGRCGGYDSDISDGLYWAAGG 157
Query: 399 TRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTV 458
A I + +INMS G + +++ A LV V++ + A NT
Sbjct: 158 RIAGIPENRNPAKVINMSLGSDGQCSYNAQ--TMIDRATRLGALVVVAAGNENQNASNTW 215
Query: 459 GAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG- 517
+ +++++VGA S G+ ++S+ G D ++APG
Sbjct: 216 PT---SCNNVLSVGATTS---------------RGIRASFSNYGVDVD------LAAPGQ 251
Query: 518 --------GAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRK 569
G PVS M GTSMA+P G AL+ISA + ++P ++
Sbjct: 252 DILSTVDSGTRRPVS----DAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKD 307
Query: 570 AVENTSVPIGALAEDKLSTG 589
+ +T+ P + L +G
Sbjct: 308 VLVSTTSPFNGRLDRALGSG 327
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 46/259 (17%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCK-IGDTRLGSMETGTGLTRAF--- 402
+DSS HG+HVAG A + G+A GA+++ + +G + + GL A
Sbjct: 99 SDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRSGGYDSDISDGLYWAAGGR 158
Query: 403 IAAV---EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVG 459
IA + + +INMS G + +++ A LV V++ + A NT
Sbjct: 159 IAGIPENRNPAKVINMSLGSDGQCSYNAQ--TMIDRATRLGALVVVAAGNENQNASNTWP 216
Query: 460 APGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG-- 517
+ +++++VGA S G+ ++S+ G D ++APG
Sbjct: 217 T---SCNNVLSVGATTS---------------RGIRASFSNYGVDVD------LAAPGQD 252
Query: 518 -------GAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKA 570
G PVS M GTSMA+P G AL+ISA + ++P ++
Sbjct: 253 ILSTVDSGTRRPVS----DAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDV 308
Query: 571 VENTSVPIGALAEDKLSTG 589
+ +T+ P + L +G
Sbjct: 309 LVSTTSPFNGRLDRALGSG 327
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 48/260 (18%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMET--------GTGL 398
+DSS HG+HVAG A + G+A GA+++ + R G ++ G
Sbjct: 99 SDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVR-ALGRCGGYDSDISDGLYWAAGG 157
Query: 399 TRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTV 458
A I + +INMS G + +++ A LV V++ + A NT
Sbjct: 158 RIAGIPENRNPAKVINMSLGSDGQCSYNAQ--TMIDRATRLGALVVVAAGNENQNASNTW 215
Query: 459 GAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG- 517
+ +++++VGA S G+ ++S+ G D ++APG
Sbjct: 216 PT---SCNNVLSVGATTS---------------RGIRASFSNYGVDVD------LAAPGQ 251
Query: 518 --------GAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRK 569
G PVS M GTSMA+P G AL+ISA + ++P ++
Sbjct: 252 DILSTVDSGTRRPVS----DAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKD 307
Query: 570 AVENTSVPIGALAEDKLSTG 589
+ +T+ P + L +G
Sbjct: 308 VLVSTTSPFNGRLDRALGSG 327
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 42/236 (17%)
Query: 350 SPHGTHVAGIATAFNPEEPLLNGIAPGAQ-LISCKIGDTR--LGSMETGTGLTRAFIAAV 406
S HGTHVA I F E + GIAP + LI D R + ++ G+ RA A
Sbjct: 68 SAHGTHVASII--FGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGA 125
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVN---KHRLVFVSSAGNSGPALNTVGAPGG 463
+IN+S GE L D+G + AV+ ++ ++ V++AGN+G + + P
Sbjct: 126 H----IINISGGE---LTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG--CDCLHVPAA 176
Query: 464 TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY--TWSSRGPTADGDLGVCISAPGGAVA 521
+ ++AVGA M H P + + T+ +G A G+ + + PGG
Sbjct: 177 LPA-VLAVGA-----MDDHGH-----PLDFSNWGSTYEQQGILAPGE-DILGAKPGGGTE 224
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
+S GTS A+P G ALL+S P VR+ + +++P
Sbjct: 225 RLS-----------GTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALP 269
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 105/236 (44%), Gaps = 42/236 (17%)
Query: 350 SPHGTHVAGIATAFNPEEPLLNGIAPGAQ-LISCKIGDTR--LGSMETGTGLTRAFIAAV 406
S HGTHVA I F E + GIAP + LI D R + ++ G+ RA A
Sbjct: 59 SAHGTHVASII--FGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGA 116
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVN---KHRLVFVSSAGNSGPALNTVGAPGG 463
+IN+S GE L D+G + AV+ ++ ++ V++AGN+G + + P
Sbjct: 117 H----IINISGGE---LTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG--CDCLHVPAA 167
Query: 464 TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY--TWSSRGPTADGDLGVCISAPGGAVA 521
+ ++AVGA M H P + + T+ +G A G+ + + PGG
Sbjct: 168 LPA-VLAVGA-----MDDHGH-----PLDFSNWGSTYEQQGILAPGE-DILGAKPGGGTE 215
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
+S GTS A+P G ALL+S P VR+ + +++P
Sbjct: 216 RLS-----------GTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALP 260
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 43/233 (18%)
Query: 348 DSSP-----HGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAF 402
DS+P HGTH AGIA A + G AP A +++ ++ D GS T T +
Sbjct: 62 DSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNS-GS-GTWTAVANGI 119
Query: 403 IAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPG 462
A + +I++S G VN A NK +V ++ A N
Sbjct: 120 TYAADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNY----- 171
Query: 463 GTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAP 522
PA + A V + ++S+ G D ++APG ++
Sbjct: 172 --------------PAYYSNAIAVASTDQNDNKSSFSTYGSWVD------VAAPGSSI-- 209
Query: 523 VSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTS 575
ST+ ++GTSMA+P G LL S + S +R A+ENT+
Sbjct: 210 YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR------SASNIRAAIENTA 256
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 92/233 (39%), Gaps = 43/233 (18%)
Query: 348 DSSP-----HGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAF 402
DS+P HGTH AGIA A + G AP A +++ ++ D GS T T +
Sbjct: 62 DSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNS-GS-GTWTAVANGI 119
Query: 403 IAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPG 462
A + +I++S G VN A NK +V ++ A N
Sbjct: 120 TYAADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNY----- 171
Query: 463 GTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAP 522
PA + A V + ++S+ G D ++APG +
Sbjct: 172 --------------PAYYSNAIAVASTDQNDNKSSFSTYGSVVD------VAAPGSWI-- 209
Query: 523 VSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTS 575
ST+ ++GTSMA+P G LL S + S +R A+ENT+
Sbjct: 210 YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR------SASNIRAAIENTA 256
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 42/236 (17%)
Query: 350 SPHGTHVAGIATAFNPEEPLLNGIAPGAQ-LISCKIGDTR--LGSMETGTGLTRAFIAAV 406
S HGTHVA I F E + GIAP + LI D R + ++ G+ RA A
Sbjct: 49 SAHGTHVASII--FGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGA 106
Query: 407 EHKCDLINMSYGEPTLLPDYGRFIDLVNEAVN---KHRLVFVSSAGNSGPALNTVGAPGG 463
+IN+S GE L D+G + AV+ ++ ++ V++AGN+G + + P
Sbjct: 107 H----IINISGGE---LTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG--CDCLHVPAA 157
Query: 464 TSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY--TWSSRGPTADGDLGVCISAPGGAVA 521
+++AVG AM H P + + T+ +G A G+ + + PGG
Sbjct: 158 L-PAVLAVG-----AMDDHGH-----PLDFSNWGSTYEQQGILAPGE-DILGAKPGGGTE 205
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
+S GT+ A+P G ALL+S P VR+ + +++P
Sbjct: 206 RLS-----------GTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALP 250
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 61/281 (21%)
Query: 347 TDSS---PHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTG------ 397
TDSS GTHVAG A + ++ G+APGA+++ I D ++ G G
Sbjct: 192 TDSSYGGSAGTHVAGTIAAKKDGKGIV-GVAPGAKIMPIVIFDDP--ALVGGNGYVGDDY 248
Query: 398 LTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNT 457
+ I A +H ++N S+G Y + + +H +V V SAGN+
Sbjct: 249 VAAGIIWATDHGAKVMNHSWGGW----GYSYTMKEAFDYAMEHGVVMVVSAGNN------ 298
Query: 458 VGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG 517
TS S + PA G V G + + +DG V + APG
Sbjct: 299 ------TSDS-----HHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDG---VSVGAPG 344
Query: 518 GAVAPVSTWTLQRRM------------------LMNGTSMASPSACGGIALLISAMKANA 559
V +ST + + GTSMA+P G +A+L+ NA
Sbjct: 345 --VTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP-NA 401
Query: 560 IPVSPYTVRKAVENTSVPIGALAEDKLSTGHGLLQVDKAYE 600
P+ +RK +ENT+ D TG+GL+++D A +
Sbjct: 402 ---KPWQIRKLLENTAFDFNGNGWDH-DTGYGLVKLDAALQ 438
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIA 404
+D++ HGTHVAG A ++ G+AP A L K GD GS E G + +A
Sbjct: 81 SDNNGHGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGD---GSGEMGW-IAKAIRY 135
Query: 405 AVE------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPA---L 455
AV+ + +I MS G PT D D V AV+ + V V +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSV-VXAAGNEGDGREDT 191
Query: 456 NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISA 515
N P + +IAVGA V+ ++T ++ + I A
Sbjct: 192 NEFAYPA-AYNEVIAVGA-------------VDFDLRLSDFTNTNEE--------IDIVA 229
Query: 516 PGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLIS-AMKANAIPVSPYTVRKAVENT 574
PG V ST+ ++GT+MA+P G +AL+I+ A A +S + +
Sbjct: 230 PG--VGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQY 605
+ PIG A+ + G+G L +D Q+
Sbjct: 288 ATPIGFTAQ---AEGNGFLTLDLVERITGQF 315
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIA 404
+D++ HGTHVAG A ++ G+AP A L K GD GS E G + +A
Sbjct: 81 SDNNGHGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGD---GSGEMGW-IAKAIRY 135
Query: 405 AVE------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPA---L 455
AV+ + +I MS G PT D D V AV+ + V V +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSV-VXAAGNEGDGREDT 191
Query: 456 NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISA 515
N P + +IAVGA V+ ++T ++ + I A
Sbjct: 192 NEFAYPA-AYNEVIAVGA-------------VDFDLRLSDFTNTNEE--------IDIVA 229
Query: 516 PGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLIS-AMKANAIPVSPYTVRKAVENT 574
PG V ST+ ++GT+MA+P G +AL+I+ A A +S + +
Sbjct: 230 PG--VGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQY 605
+ PIG A+ + G+G L +D Q+
Sbjct: 288 ATPIGFTAQ---AEGNGFLTLDLVERITGQF 315
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIA 404
+D++ HGTHVAG A ++ G+AP A L K GD GS E G + +A
Sbjct: 81 SDNNGHGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGD---GSGEMGW-IAKAIRY 135
Query: 405 AVE------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPA---L 455
AV+ + +I MS G PT D D V AV+ + V V +AGN G
Sbjct: 136 AVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSV-VCAAGNEGDGREDT 191
Query: 456 NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISA 515
N P + +IAVGA V+ ++T ++ + I A
Sbjct: 192 NEFAYPA-AYNEVIAVGA-------------VDFDLRLSDFTNTNEE--------IDIVA 229
Query: 516 PGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLIS-AMKANAIPVSPYTVRKAVENT 574
PG V ST+ ++GT+MA+P G +AL+I+ A A +S + +
Sbjct: 230 PG--VGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 287
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQY 605
+ PIG A+ + G+G L +D Q+
Sbjct: 288 ATPIGFTAQ---AEGNGFLTLDLVERITGQF 315
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 347 TDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIA 404
+D++ HGTHVAG A ++ G+AP A L K GD GS E G + +A
Sbjct: 63 SDNNGHGTHVAGTVAAAETGSGVV-GVAPKADLFIIKALSGD---GSGEMGW-IAKAIRY 117
Query: 405 AVE------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPA---L 455
AV+ + +I MS G PT D D V AV+ + V V +AGN G
Sbjct: 118 AVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSV-VCAAGNEGDGREDT 173
Query: 456 NTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISA 515
N P + +IAVGA V+ ++T ++ + I A
Sbjct: 174 NEFAYPA-AYNEVIAVGA-------------VDFDLRLSDFTNTNEE--------IDIVA 211
Query: 516 PGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLIS-AMKANAIPVSPYTVRKAVENT 574
PG V ST+ ++GT+MA+P G +AL+I+ A A +S + +
Sbjct: 212 PG--VGIKSTYLDSGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRR 269
Query: 575 SVPIGALAEDKLSTGHGLLQVDKAYEYVQQY 605
+ PIG A+ + G+G L +D Q+
Sbjct: 270 ATPIGFTAQ---AEGNGFLTLDLVERITGQF 297
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 64/235 (27%), Positives = 91/235 (38%), Gaps = 41/235 (17%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIAA 405
D + HGTHVAG A N +L G+AP A+L + K+ GL A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNG 116
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + TL VN A ++ LV V+++GNSG
Sbjct: 117 MHVASLSLGSPSPSATLE-------QAVNSATSRGVLV-VAASGNSG------------- 155
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
G+ PA A A V ++S G G+ I APG V ST
Sbjct: 156 -----AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--ST 202
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ +NGTSMA+P G AL+ K S +R ++NT+ +G+
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 84/223 (37%), Gaps = 43/223 (19%)
Query: 276 VVDAVVWHDGEVWRVALDT----QSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACT 331
V+DA + E WR+ T QS ED K +++HG+
Sbjct: 32 VIDAGFDKNHEAWRLTDKTKARYQSKEDLE--------------KAKKEHGITYGEWVND 77
Query: 332 FVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEP----LLNGIAPGAQLISCKIGDT 387
VA +D D HGTHV+GI + P E L G P AQL+ ++ +
Sbjct: 78 KVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRV-EI 135
Query: 388 RLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHR---LVF 444
G + +A AV +INMS+G L Y D +A + + +
Sbjct: 136 VNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALA--YANLPDETKKAFDYAKSKGVSI 193
Query: 445 VSSAGNSG-------------PALNTVGAPGGTSSSIIAVGAY 474
V+SAGN P VG P S+ + V +Y
Sbjct: 194 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST-LTVASY 235
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 498 WSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALL 551
+SS G TADG++ I+APG + +S+ + ++GTSM++P G + LL
Sbjct: 378 FSSWGLTADGNIKPDIAAPGQDI--LSSVANNKYAKLSGTSMSAPLVAGIMGLL 429
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 90/235 (38%), Gaps = 41/235 (17%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKI--GDTRLGSMETGTGLTRAFIAA 405
D + HGTHVAG A N +L G+AP A+L + K+ GL A
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL-GVAPSAELYAVKVLGASGSGSYSSIAQGLEWAGNNG 116
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + TL VN A ++ LV V+++GNSG
Sbjct: 117 MHVASLSLGSPSPSATLE-------QAVNSATSRGVLV-VAASGNSG------------- 155
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
G+ PA A A V ++S G G+ I APG V ST
Sbjct: 156 -----AGSISYPARYANAMAVGATDQNNNRASFSQYGA------GLDIVAPGVNVQ--ST 202
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVPIGA 580
+ +NGT MA+P G AL+ K S +R ++NT+ +G+
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALV----KQKNPSWSNVQIRNHLKNTATSLGS 253
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 105/256 (41%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTG--LTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQASWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + +S + + + A
Sbjct: 106 IANNMDVINMSLGSPSGSAALKAAVDKAVASGVVVVAAAGNSGTSGSSSTVSYPA---KY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S +SS GP D + APG V+ ST
Sbjct: 163 PSVIAVGAV---------------DSSNQRAPFSSVGPELD------VMAPG--VSICST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ ++GTSMASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGGKYGALSGTSMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTATKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 251 SFYYGKGLINVEAAAQ 266
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 105/256 (41%), Gaps = 52/256 (20%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTG--LTRAFIAA 405
D++ HGTHVAG A +AP A L + K+ LG+ +G + A
Sbjct: 60 DNNSHGTHVAGTVLA----------VAPSASLYAVKV----LGADGSGQASWIINGIEWA 105
Query: 406 VEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTS 465
+ + D+INMS G P+ +D + +S + + + A
Sbjct: 106 IANNMDVINMSLGSPSGSAALKAAVDKAVASGVVVVAAAGNSGTSGSSSTVSYPA---KY 162
Query: 466 SSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
S+IAVGA S +SS GP D + APG V+ ST
Sbjct: 163 PSVIAVGAV---------------DSSNQRAPFSSVGPELD------VMAPG--VSICST 199
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYT-VRKAVENTSVPIGALAED 584
+ ++GT+MASP G AL++S P T VR ++ENT+ +G D
Sbjct: 200 LPGGKYGALSGTAMASPHVAGAAALILSKH-----PNWTNTQVRSSLENTATKLG----D 250
Query: 585 KLSTGHGLLQVDKAYE 600
G GL+ V+ A +
Sbjct: 251 SFYYGKGLINVEAAAQ 266
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 37/238 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTH AG + G+A QL K+ D + G+G IA ++
Sbjct: 65 DGNGHGTHCAGTVGSRT------YGVAKKTQLFGVKVLD------DNGSGQYSTIIAGMD 112
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
D N K + +S G ++N+ A +S
Sbjct: 113 FVAS-------------------DKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGV 153
Query: 468 IIAVGAYVSPAMAAGAHCVVEPP--SEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
++AV A + A A EP + G + R ++ + I PG ++ +ST
Sbjct: 154 MVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSI--LST 211
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVEN--TSVPIGAL 581
W ++GTSMA+P G A L++ K A Y A + +++P G +
Sbjct: 212 WIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGTV 269
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 43/223 (19%)
Query: 276 VVDAVVWHDGEVWRVALDT----QSLEDEPDHGKLADFAPLTNYKTERKHGVFSKLDACT 331
V+DA + E WR+ T QS ED K +++HG+
Sbjct: 23 VIDAGFDKNHEAWRLTDKTKARYQSKEDLE--------------KAKKEHGITYGEWVND 68
Query: 332 FVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEP----LLNGIAPGAQLISCKIGDT 387
VA +D D HGTHV+GI + P E L G P AQL+ ++ +
Sbjct: 69 KVAYYHDYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRLEGAXPEAQLLLXRV-EI 126
Query: 388 RLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHR---LVF 444
G + +A A+ +IN S+G L Y D +A + + +
Sbjct: 127 VNGLADYARNYAQAIRDAINLGAKVINXSFGNAALA--YANLPDETKKAFDYAKSKGVSI 184
Query: 445 VSSAGNSG-------------PALNTVGAPGGTSSSIIAVGAY 474
V+SAGN P VG P S++ V +Y
Sbjct: 185 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLT-VASY 226
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 487 VEPPSEGLEYT-WSSRGPTADGDLGVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSAC 545
V P + G + + +SS G TADG++ I+APG + +S+ + ++GTS ++P
Sbjct: 357 VLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDI--LSSVANNKYAKLSGTSXSAPLVA 414
Query: 546 GGIALL 551
G LL
Sbjct: 415 GIXGLL 420
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 31/231 (13%)
Query: 352 HGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSME---TGTGLTRAFIAAVEH 408
H HV +T E + GIAP ++I+ G+ + + L RA A+E
Sbjct: 127 HACHVT--STIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALEL 184
Query: 409 KCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSI 468
++I+ ++ PT + + + + ++ VS GN+
Sbjct: 185 GANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNN----------------- 227
Query: 469 IAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG--PTADGDLGVCISAPGGAVAPVSTW 526
+ ++ PA+ G V +G +S+ G T +G I APG +
Sbjct: 228 -SNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEG-----ILAPGEEILGAQPC 281
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
T + + + GTSMA+P G ALL+S PV VR A+ T++P
Sbjct: 282 T-EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIP 331
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 37/238 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTH AG + G+A QL K+ D + G+G IA ++
Sbjct: 65 DGNGHGTHCAGTVGSRT------YGVAKKTQLFGVKVLD------DNGSGQYSTIIAGMD 112
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
D N K + +S G ++N+ A +S
Sbjct: 113 FVAS-------------------DKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGV 153
Query: 468 IIAVGAYVSPAMAAGAHCVVEPP--SEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
++AV A + A A EP + G + R ++ + I PG + +ST
Sbjct: 154 MVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDI--LST 211
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVEN--TSVPIGAL 581
W ++GTSMA+P G A L++ K A Y A + +++P G +
Sbjct: 212 WIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGTV 269
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 31/231 (13%)
Query: 352 HGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSME---TGTGLTRAFIAAVEH 408
H HV +T E + GIAP ++I+ G+ + + L RA A+E
Sbjct: 109 HACHVT--STIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALEL 166
Query: 409 KCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSSI 468
++I+ ++ PT + + + + ++ VS GN+
Sbjct: 167 GANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNN----------------- 209
Query: 469 IAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG--PTADGDLGVCISAPGGAVAPVSTW 526
+ ++ PA+ G V +G +S+ G T +G I APG +
Sbjct: 210 -SNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEG-----ILAPGEEILGAQPC 263
Query: 527 TLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
T + + + GTSMA+P G ALL+S PV VR A+ T++P
Sbjct: 264 T-EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIP 313
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 35/263 (13%)
Query: 318 ERKHGVFSKLDACTFVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGA 377
++ H F D + V E N + S HGTHVA I F + + GIAP
Sbjct: 33 DQNHPCFIGADLTRLPSLVSGEANANGSM---STHGTHVASII--FGQHDSPVTGIAPQC 87
Query: 378 Q-LISCKIGDTRLGSMETGTGLTRAFIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEA 436
+ LI D L + L+RA AV + ++IN+S G+ T + +++ +
Sbjct: 88 RGLIVPVFADESLKLSQLD--LSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQL 145
Query: 437 VNKHRLVFVSSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEY 496
++ ++ +++ GN G V A + +++AVGA +G
Sbjct: 146 CQENNVLLIAATGNDGCECLHVPA---SLPTVLAVGAM---------------DDQGKPV 187
Query: 497 TWSSRGPTADGDLGVCISAPGGAV--APVSTWTLQRRMLMNGTSMASPSACGGIALLISA 554
+S+ G D I APG + A + T++ ++GTS A+P G ALL+S
Sbjct: 188 DFSNWG---DAYQKQGILAPGKDILGAKPNGGTIR----LSGTSFATPIVSGVAALLLSL 240
Query: 555 MKANAIPVSPYTVRKAVENTSVP 577
P V+ A+ ++ P
Sbjct: 241 QIKRGEKPDPQKVKNALLASATP 263
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 89/238 (37%), Gaps = 37/238 (15%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTH AG + G+ QL K+ D + G+G IA ++
Sbjct: 65 DGNGHGTHCAGTVGSRT------YGVVKKTQLFGVKVLD------DNGSGQYSTIIAGMD 112
Query: 408 HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSSS 467
D N K + +S G ++N+ A +S
Sbjct: 113 FVAS-------------------DKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGV 153
Query: 468 IIAVGAYVSPAMAAGAHCVVEPP--SEGLEYTWSSRGPTADGDLGVCISAPGGAVAPVST 525
++AV A + A A EP + G + R ++ + I PG ++ +ST
Sbjct: 154 MVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTSI--LST 211
Query: 526 WTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVEN--TSVPIGAL 581
W ++GTSMA+P G A L++ K A Y A + +++P G +
Sbjct: 212 WIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGTV 269
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 88/248 (35%), Gaps = 49/248 (19%)
Query: 344 SIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFI 403
S D HGTH AG + G+A + K+ D ++G+G I
Sbjct: 62 STARDGHGHGTHCAGTIGSKTW------GVAKKVSIFGVKVLD------DSGSGSLSNII 109
Query: 404 AAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGG 463
A ++ D + + + +S G ALN A
Sbjct: 110 AGMDFVAS-------------------DRQSRNCPRRTVASMSLGGGYSAALNQAAARLQ 150
Query: 464 TSSSIIAVGA--------YVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISA 515
+S +AV A SPA V S + T+S+ G D I A
Sbjct: 151 SSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSNDVRSTFSNYGRVVD------IFA 204
Query: 516 PGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVEN-- 573
PG ++ STW R ++GTSMA+P G A L +A + + +N
Sbjct: 205 PGTSIT--STWIGGRTNTISGTSMATPHIAGLAAYLFGLEGGSAGAMCGRIQTLSTKNVL 262
Query: 574 TSVPIGAL 581
TS+P G +
Sbjct: 263 TSIPSGTV 270
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 345 IVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSME---TGTGLTRA 401
++ D++ H T +T E + GIAP ++I+ G+ + + L RA
Sbjct: 123 VLNDAACHVT-----STIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARA 177
Query: 402 FIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAP 461
A+E ++I+ ++ PT + + + + ++ VS GN+
Sbjct: 178 IDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNN---------- 227
Query: 462 GGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRG--PTADGDLGVCISAPGGA 519
+ ++ PA+ G V +G +S+ G T +G I APG
Sbjct: 228 --------SNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEG-----ILAPGEE 274
Query: 520 VAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENTSVP 577
+ T + + + GTSMA+P G ALL+S PV VR A+ T++P
Sbjct: 275 ILGAQPCT-EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIP 331
>pdb|2VHC|A Chain A, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|B Chain B, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|C Chain C, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
Length = 331
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 23/118 (19%)
Query: 398 LTRAFIAAVEHKCDLINMSYGEPT--LLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL 455
L A A+ K + +GEP D+ F+D + A+ +HR++ + S
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS------LK 192
Query: 456 NTVGAPGG-TSSSIIAVGAY--VSP--AMAAGAHCVVEPPSEGLEYTWSSRGPTADGD 508
N +GA GG T+S I+ GA+ +S AMAA CVV +S GPT++ D
Sbjct: 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV----------IASLGPTSNDD 240
>pdb|1W44|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W46|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W47|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W48|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W49|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W4A|A Chain A, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|B Chain B, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|C Chain C, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4B|A Chain A, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|B Chain B, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|C Chain C, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4C|A Chain A, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|B Chain B, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|C Chain C, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|D Chain D, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|E Chain E, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|F Chain F, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|G Chain G, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|H Chain H, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|I Chain I, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|J Chain J, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|K Chain K, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|L Chain L, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|M Chain M, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|N Chain N, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|O Chain O, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|P Chain P, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|Q Chain Q, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|R Chain R, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|S Chain S, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|T Chain T, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|U Chain U, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|V Chain V, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|W Chain W, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|X Chain X, P4 Protein From Bacteriophage Phi12 Apo State
Length = 331
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 398 LTRAFIAAVEHKCDLINMSYGEPT--LLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL 455
L A A+ K + +GEP D+ F+D + A+ +HR++ + S
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS------LK 192
Query: 456 NTVGAPGG-TSSSIIAVGAY--VSP--AMAAGAHCVV 487
N +GA GG T+S I+ GA+ +S AMAA CVV
Sbjct: 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV 229
>pdb|2VHJ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHQ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
Length = 331
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 398 LTRAFIAAVEHKCDLINMSYGEPT--LLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL 455
L A A+ K + +GEP D+ F+D + A+ +HR++ + S
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS------LK 192
Query: 456 NTVGAPGG-TSSSIIAVGAY--VSP--AMAAGAHCVV 487
N +GA GG T+S I+ GA+ +S AMAA CVV
Sbjct: 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV 229
>pdb|2VHT|A Chain A, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|B Chain B, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|C Chain C, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
Length = 331
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 398 LTRAFIAAVEHKCDLINMSYGEPT--LLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL 455
L A A+ K + +GEP D+ F+D + A+ +HR++ + S
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS------LK 192
Query: 456 NTVGAPGG-TSSSIIAVGAY--VSP--AMAAGAHCVV 487
N +GA GG T+S I+ GA+ +S AMAA CVV
Sbjct: 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV 229
>pdb|2VHU|A Chain A, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|B Chain B, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|C Chain C, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
Length = 331
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 398 LTRAFIAAVEHKCDLINMSYGEPT--LLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPAL 455
L A A+ K + +GEP D+ F+D + A+ +HR++ + S
Sbjct: 139 LVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDS------LK 192
Query: 456 NTVGAPGG-TSSSIIAVGAY--VSP--AMAAGAHCVV 487
N +GA GG T+S I+ GA+ +S AMAA CVV
Sbjct: 193 NVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVV 229
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 42/255 (16%)
Query: 349 SSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVEH 408
S+ HG+HVAG A + G+A GA++I ++ LG +
Sbjct: 102 STWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRV----LGKCGG-------------Y 144
Query: 409 KCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAPGGTSS-- 466
D+ + Y G ID V + N ++V +S G G + N+ T++
Sbjct: 145 DSDITDGMYWSA------GGHIDGVPDNQNPAQVVNMSLGGGGGCSQNSQRMIDKTTNLG 198
Query: 467 --SIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPG------- 517
+IA G A S G R P ++ V ++APG
Sbjct: 199 ALIVIAAGNENQDASRTWPSSCNNVLSVGATTPKGKRAPFSNYGARVHLAAPGTNILSTI 258
Query: 518 --GAVAPV-STWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRKAVENT 574
G PV S++ ++ GTSMA+P G AL+ISA + ++P + + T
Sbjct: 259 DVGQAGPVRSSYGMKA-----GTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRT 313
Query: 575 SVPIGALAEDKLSTG 589
+ + L +G
Sbjct: 314 TSRFNGRLDRGLGSG 328
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 33.9 bits (76), Expect = 0.63, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 79/222 (35%), Gaps = 47/222 (21%)
Query: 348 DSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLTRAFIAAVE 407
D + HGTHVAG + G+A L + ++ D G+G T IA V+
Sbjct: 66 DCNGHGTHVAGTIGG------VTYGVAKAVNLYAVRVLDC------NGSGSTSGVIAGVD 113
Query: 408 ------HKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFVSSAGNSGPALNTVGAP 461
+ + NMS G G ++ AV ++
Sbjct: 114 WVTRNHRRPAVANMSLG--------GGVSTALDNAVKN--------------SIAAGVVY 151
Query: 462 GGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDLGVCISAPGGAVA 521
+ + A SPA A A V S ++S+ G D + APG ++
Sbjct: 152 AVAAGNDNANACNYSPARVAEALTVGATTSSDARASFSNYGSCVD------LFAPGASIP 205
Query: 522 PVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVS 563
+ +NGTSMA+P G+A L +A P S
Sbjct: 206 SAWYTSDTATQTLNGTSMATPHV-AGVAALYLEQNPSATPAS 246
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 83/229 (36%), Gaps = 57/229 (24%)
Query: 332 FVANVYDEGNVLSIVTDSSPHGTHVAGIATAFNPEEPLLNGIAPGAQLISCKIGDTRLGS 391
F+ N YD TD + HGTHVAG G+A ++ ++ +
Sbjct: 59 FIDNDYD-------ATDCNGHGTHVAGTIGGST------YGVAKNVNVVGVRVLNC---- 101
Query: 392 METGTGLTRAFIAAVEHKCD------LINMSYGEPTLLPDYGRFIDLVNEAVNKHRLVFV 445
+G+G IA + + + NMS G + D A + FV
Sbjct: 102 --SGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA-----SQATDDAVNAAVAAGITFV 154
Query: 446 SSAGNSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTA 505
+AGN + SPA AA A V S ++S+ G
Sbjct: 155 VAAGNDN-----------------SNACNYSPARAADAITVGSTTSNDSRSSFSNYGTCL 197
Query: 506 DGDLGVCISAPGGAVAPVSTWTLQRRM--LMNGTSMASPSACGGIALLI 552
D I APG ++ S+W ++GTSMASP G AL +
Sbjct: 198 D------IYAPGSSI--TSSWYTSNSATNTISGTSMASPHVAGVAALYL 238
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 450 NSGPALNTVGAPGGTSSSIIAVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTADGDL 509
NS A T GA G S A+ +P + + P + D
Sbjct: 293 NSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSV------------SVDRAT 340
Query: 510 GVCISAPGGAVAPVSTWTLQRRMLMNGTSMASPSACGGIALLISAMKANAIPVSPYTVRK 569
G+ + A G VS Q NGTSMA+P G+A L+ + S VR
Sbjct: 341 GLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHV-SGVATLVWSYHPEC---SASQVRA 396
Query: 570 AVENTSVPIGALAEDKLSTGHGLLQVDKAYEYVQQ 604
A+ T+ + D TG+G++ A Y+ +
Sbjct: 397 ALNATADDLSVAGRDN-QTGYGMINAVAAKAYLDE 430
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 533 LMNGTSMASPSACGGIALLISA 554
+MNGTS A+PS G +ALL+SA
Sbjct: 331 VMNGTSSATPSTSGAMALLMSA 352
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 810 SPVSKNFAFPVVGGQTMELAIAQFWSSGMGSHETTIVDFEIEFHGIAVNKDEVLLDGSEA 869
SP+ + P G T LA+A + S ++ + +E G EV +GS+
Sbjct: 610 SPIRLGLSLPAGGKPT--LAVANLRHTADAS--DVVLRWRVEHDGAVAASGEVAAEGSDG 665
Query: 870 PVRIDAEALLTSERLAPAAVLNKIRVPCRPIETKLTVLPTNRDKL---PSGKQILALTLT 926
P+R A + + PAA L ET LTV RD P+G + A+ L
Sbjct: 666 PLRAGESATIALPAM-PAAPLG---------ETWLTVEAVLRDATGWAPAGHPLGAVQLD 715
Query: 927 YKFKLEDGAEVKPQIPL 943
+P PL
Sbjct: 716 LSAPAVPTRSPRPATPL 732
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,354,021
Number of Sequences: 62578
Number of extensions: 1837759
Number of successful extensions: 3971
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3768
Number of HSP's gapped (non-prelim): 158
length of query: 1373
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1262
effective length of database: 8,027,179
effective search space: 10130299898
effective search space used: 10130299898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)