Query 000650
Match_columns 1372
No_of_seqs 266 out of 632
Neff 7.2
Searched_HMMs 46136
Date Mon Apr 1 21:29:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1848 Uncharacterized conser 100.0 6E-117 1E-121 1082.8 55.8 1219 23-1359 322-1608(1610)
2 PLN03076 ARF guanine nucleotid 100.0 2.2E-83 4.8E-88 847.9 77.0 581 212-878 869-1512(1780)
3 KOG0929 Guanine nucleotide exc 100.0 4.4E-54 9.5E-59 546.6 27.7 536 211-878 760-1321(1514)
4 KOG0928 Pattern-formation prot 100.0 4.4E-33 9.6E-38 347.5 42.9 558 212-873 734-1353(1386)
5 KOG1846 Uncharacterized conser 99.5 1.8E-11 3.9E-16 146.7 36.5 438 381-874 845-1351(1777)
6 PF09324 DUF1981: Domain of un 99.5 4E-14 8.6E-19 132.8 5.5 76 516-591 11-86 (86)
7 PF12783 Sec7_N: Guanine nucle 99.4 4.7E-13 1E-17 142.6 10.0 92 5-107 73-168 (168)
8 KOG1848 Uncharacterized conser 98.9 6.8E-07 1.5E-11 114.4 29.1 563 21-641 272-921 (1610)
9 PLN03076 ARF guanine nucleotid 98.7 0.0006 1.3E-08 94.3 52.8 95 24-119 419-516 (1780)
10 COG5307 SEC7 domain proteins [ 98.7 1.7E-07 3.8E-12 121.6 17.3 508 216-853 492-1011(1024)
11 PF01602 Adaptin_N: Adaptin N 87.6 89 0.0019 39.4 31.3 124 435-591 55-179 (526)
12 PF03378 CAS_CSE1: CAS/CSE pro 82.3 1.3E+02 0.0029 37.3 21.5 277 453-837 66-352 (435)
13 PF12348 CLASP_N: CLASP N term 77.3 1.1E+02 0.0024 33.9 17.5 176 437-641 27-211 (228)
14 KOG0929 Guanine nucleotide exc 74.1 3.7 8.1E-05 56.3 5.1 99 21-120 335-435 (1514)
15 PF02985 HEAT: HEAT repeat; I 72.9 6.6 0.00014 29.4 4.1 28 697-724 2-29 (31)
16 KOG1949 Uncharacterized conser 72.7 58 0.0013 41.6 14.1 110 705-855 184-294 (1005)
17 PF01602 Adaptin_N: Adaptin N 71.3 2.8E+02 0.0061 34.9 22.6 127 457-623 230-356 (526)
18 KOG2171 Karyopherin (importin) 69.0 4.1E+02 0.0088 36.4 21.4 163 445-638 27-190 (1075)
19 PF14500 MMS19_N: Dos2-interac 67.3 87 0.0019 36.1 13.6 76 537-615 96-172 (262)
20 PF02985 HEAT: HEAT repeat; I 66.4 12 0.00027 27.9 4.4 29 459-487 1-29 (31)
21 KOG2023 Nuclear transport rece 65.9 97 0.0021 39.5 14.0 132 437-592 151-284 (885)
22 KOG2160 Armadillo/beta-catenin 62.2 75 0.0016 37.8 11.8 116 452-595 122-242 (342)
23 PF12348 CLASP_N: CLASP N term 62.0 1.1E+02 0.0023 34.1 13.0 113 451-591 87-204 (228)
24 KOG1824 TATA-binding protein-i 60.9 3.5E+02 0.0075 36.3 17.9 220 380-617 435-662 (1233)
25 KOG2171 Karyopherin (importin) 60.7 6E+02 0.013 34.9 31.5 383 454-925 385-784 (1075)
26 PF12717 Cnd1: non-SMC mitotic 57.6 94 0.002 33.4 11.1 91 451-571 18-109 (178)
27 KOG2023 Nuclear transport rece 55.4 73 0.0016 40.6 10.5 162 453-635 123-284 (885)
28 PF08427 DUF1741: Domain of un 54.7 2.8E+02 0.006 31.6 14.3 67 688-754 58-135 (237)
29 PF11640 TAN: Telomere-length 52.6 1.9E+02 0.0042 30.4 12.2 125 702-854 11-141 (155)
30 KOG0928 Pattern-formation prot 51.1 62 0.0014 44.3 9.7 65 53-117 390-457 (1386)
31 KOG1248 Uncharacterized conser 49.5 4E+02 0.0087 36.6 16.4 119 467-613 663-792 (1176)
32 cd00020 ARM Armadillo/beta-cat 48.1 57 0.0012 31.5 7.1 74 459-555 8-81 (120)
33 PF12719 Cnd3: Nuclear condens 47.9 1.1E+02 0.0025 35.7 10.7 29 707-735 76-105 (298)
34 KOG1824 TATA-binding protein-i 46.0 9.3E+02 0.02 32.7 23.5 280 533-871 15-305 (1233)
35 KOG1248 Uncharacterized conser 43.3 1.1E+03 0.024 32.7 35.4 332 452-957 91-422 (1176)
36 PF12755 Vac14_Fab1_bd: Vacuol 40.3 1.5E+02 0.0034 28.7 8.4 29 694-723 67-95 (97)
37 KOG1062 Vesicle coat complex A 39.4 1.1E+03 0.023 31.5 30.6 33 458-490 142-174 (866)
38 PF12719 Cnd3: Nuclear condens 38.9 6.8E+02 0.015 29.2 15.3 113 457-597 26-148 (298)
39 PF09324 DUF1981: Domain of un 38.2 81 0.0017 29.9 5.9 53 792-850 33-85 (86)
40 PF12717 Cnd1: non-SMC mitotic 38.0 4.1E+02 0.0089 28.5 12.2 137 471-641 1-137 (178)
41 PF11864 DUF3384: Domain of un 37.3 9.3E+02 0.02 30.2 21.9 235 394-722 208-464 (464)
42 PF12783 Sec7_N: Guanine nucle 37.0 3.6E+02 0.0079 28.5 11.5 86 401-489 8-104 (168)
43 KOG0166 Karyopherin (importin) 35.3 3.7E+02 0.008 34.0 12.4 212 461-752 155-374 (514)
44 PF04826 Arm_2: Armadillo-like 34.5 5.9E+02 0.013 29.3 13.3 145 463-641 59-210 (254)
45 KOG1766 Enhancer of rudimentar 29.6 79 0.0017 30.2 4.1 47 787-833 16-65 (104)
46 PF05004 IFRD: Interferon-rela 29.3 1E+03 0.022 28.2 18.8 155 792-958 58-214 (309)
47 KOG2956 CLIP-associating prote 28.0 9.9E+02 0.021 29.9 13.9 117 695-857 287-404 (516)
48 PF10521 DUF2454: Protein of u 27.8 1E+03 0.022 27.7 15.1 156 689-878 113-275 (282)
49 smart00802 UME Domain in UVSB 26.4 3.1E+02 0.0068 27.2 8.0 76 536-617 28-103 (107)
50 PF08767 CRM1_C: CRM1 C termin 24.8 5.4E+02 0.012 30.6 11.3 116 706-857 82-198 (319)
51 PF12755 Vac14_Fab1_bd: Vacuol 24.5 2E+02 0.0043 28.0 6.2 73 518-593 24-96 (97)
52 PF11640 TAN: Telomere-length 23.8 4.6E+02 0.01 27.5 9.4 104 537-640 18-141 (155)
53 PF08064 UME: UME (NUC010) dom 23.5 2.4E+02 0.0052 27.8 6.7 78 533-616 25-102 (107)
54 PF12830 Nipped-B_C: Sister ch 22.4 1E+03 0.022 25.8 12.6 96 458-596 8-103 (187)
55 PF01133 ER: Enhancer of rudim 21.1 57 0.0012 31.9 1.7 46 788-833 17-65 (102)
56 KOG1241 Karyopherin (importin) 20.9 2.1E+03 0.045 28.9 20.2 269 459-851 3-286 (859)
No 1
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-117 Score=1082.80 Aligned_cols=1219 Identities=30% Similarity=0.361 Sum_probs=928.5
Q ss_pred CCCCCchhH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhccChHHHHHHHHhccCC
Q 000650 23 GETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMN 100 (1372)
Q Consensus 23 ~~~~~p~F~--~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~ld~d~~~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~ 100 (1372)
+-.++.+|| .++.|.+.+.+..|.+.+..+|++|++.+.++-+.|.+.|+|.+.+|+.|+++.+++.++.+++++|++
T Consensus 322 ~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~dik 401 (1610)
T KOG1848|consen 322 FDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIK 401 (1610)
T ss_pred cchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhhccCCCCchhhHHHHhhcccC
Confidence 346777777 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhccc-------cchhhhhhhccc-cccccccceEeeecccccCccccccchhhhHHHHHH
Q 000650 101 PKNTNVVEGMVKALARVVSSVQFQ-------ETSEESLSAVAG-MFSSKAKGIEWILDNDASNAAVLVASEAHSITLAIE 172 (1372)
Q Consensus 101 ~~~k~I~~~l~~~l~~~~~~~~~~-------~~~~~~~~~~~g-~~~sk~~gi~~sl~~d~~~~~~~~~~~~~~i~~~~~ 172 (1372)
+..+|+|.+....+.+++....+. +...++.+.++| .+.+|..||+|-.+.|+.....+.--+.-.+.++.|
T Consensus 402 tk~thlldk~~~plan~vy~~lv~ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnds~stavl~~l~~~~~~li~e 481 (1610)
T KOG1848|consen 402 TKVTHLLDKEILPLANFVYKELVGTISNSIQEMLNKSSIESGGSEFTSKEKGIELREDNDSMSTAVLLQLSFSNKVLIPE 481 (1610)
T ss_pred cchHHHHhhcccccchhHHHHHHHhhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCchHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999865422 233334445566 677888899987655544333332223334555557
Q ss_pred HHHHHHHHhhcccccccccCCCCCCCCCCCCCCCCcc-chhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHH
Q 000650 173 GLLGVVFTVATLTDEAVDVGELESPRCDYDPLPKCMG-ETAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQ 251 (1372)
Q Consensus 173 ~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq 251 (1372)
|+.++.++|+.+...+.+.+....+.....+...-.+ ...++.+.|+.+.|+.++++++..+..+.|+.+.++++.+++
T Consensus 482 ~~~ss~~avSt~~~~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~s 561 (1610)
T KOG1848|consen 482 GLYSSRMAVSTLLKRAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYS 561 (1610)
T ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhhccCCccccceeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchH
Confidence 7776666666665555433322222211111111111 245566778999999999999999999999999999999999
Q ss_pred HHHHHHcccCCcchHHHHHHHHHHHhccCCCCcccccc-cccCCCCCC---cc-----------------------cccc
Q 000650 252 AFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSA-VLQSPGSKR---SE-----------------------SLVD 304 (1372)
Q Consensus 252 ~~a~vag~L~L~~~rDafL~sL~k~t~~~~~~~~~~~~-~~~~~gs~~---~~-----------------------~~~~ 304 (1372)
.++.+||+.+-+++..+++..||++....+........ +..+|..++ ++ ..+-
T Consensus 562 tltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~s 641 (1610)
T KOG1848|consen 562 TLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTS 641 (1610)
T ss_pred HHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCcccccc
Confidence 99999999999999999999999999854422110000 001111111 00 0111
Q ss_pred ccCCcCCChhHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhHHhhcC-CCCCcccccccccccccc----ccCccchh
Q 000650 305 QKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHS-PHATTQEVSTASSKLARE----SSGQYSDF 379 (1372)
Q Consensus 305 ~~~~~~l~~Knv~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~l~~-p~~~~~~~~~~~p~~s~~----~~~~~~dl 379 (1372)
+..++.++.||+++.|+++++++.+-+.++.+|..++.|...+|+..+. |..+.+.+.+..+.-+.+ ...+++|.
T Consensus 642 s~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~~~~~ynd~ 721 (1610)
T KOG1848|consen 642 SLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQPAYMEPLQTLLAVITSSSVHPIQPLTAPRQSYNDD 721 (1610)
T ss_pred CCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcchhhcCHHHhhHHHHhcCCCCCCCcchhhHHHHHHH
Confidence 2367889999999999999999999999999999999999999998765 555443332222222111 11346788
Q ss_pred hHHHHhHHhHhhhccCCCHHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCceehHHHHHHHHHHhcccccchHHHH
Q 000650 380 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQV 459 (1372)
Q Consensus 380 ~il~~~~~~LFesS~~l~~~al~~fi~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~Nl~R~~~iW~~l 459 (1372)
.+++++.+++|++++.++..++..+++||..++.+.+.... ++..|..|....|..+
T Consensus 722 ~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~-----------------------~~~~sslr~~~~~l~v 778 (1610)
T KOG1848|consen 722 LLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILET-----------------------VCSCSSLRFLDSKLDV 778 (1610)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh-----------------------hccccccccccchhhh
Confidence 89999999999999999999999999999999988654332 1223456888888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhh-hhhhhhhhHHHHHhccHHHHhccCCcHH
Q 000650 460 VGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVE-SRHGDLRSIECAVISPLRVLYFSTQSTD 538 (1372)
Q Consensus 460 ~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~-~~~~~~~~lq~~ll~pl~~L~~~~~~~d 538 (1372)
..|+.....++|+..+..|++.|++.+...+....+.....+.....+++. .+.....+.+ +++-.+...+..++..|
T Consensus 779 ~~~~~~l~e~snq~~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~-~~l~sl~v~~~s~~~~e 857 (1610)
T KOG1848|consen 779 SGWSLILKELSNQFKIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLG-MLLPSLEVSDNSSRGVE 857 (1610)
T ss_pred hHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhH-HHHHHHHHHHhcCccce
Confidence 888888888888888888888888888888877665532223322222222 2233334443 55555555677889999
Q ss_pred HHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhc---CchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhh
Q 000650 539 VRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADA---SEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYS 615 (1372)
Q Consensus 539 Ir~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~---~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~ 615 (1372)
+|...+++|.+|+|+.|+.+-+||..||++|+++++. +++++|+.||+||++|++|||++||.+|+..|||++..|+
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs 937 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFS 937 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998774 4889999999999999999999999999999999999999
Q ss_pred hcCCCccchHhHHHHHHHhHHHHHhccCC-CChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhhhHH
Q 000650 616 SQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLF 694 (1372)
Q Consensus 616 ~Q~~dlNISLtAi~llW~isD~L~~~~~~-~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~ 694 (1372)
+|++|+||||||||+||+++||+++++.. +...++.. ..|+..+. .+.+-..++.||+
T Consensus 938 ~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~---------------~~e~~~ss------~~~~~~l~e~lwi 996 (1610)
T KOG1848|consen 938 RQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYN---------------SVEDLYSS------MKSKEILPEVLWI 996 (1610)
T ss_pred hhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhc---------------chhhhccc------ccchhhhhhHHHH
Confidence 99999999999999999999999985221 11111111 11111111 1222344789999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCcc
Q 000650 695 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 774 (1372)
Q Consensus 695 ~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~ 774 (1372)
.||..|+++|.|+|+||||||+||||||+++||+.|++.+|+.|+|+|++|||+...+.. .+||+++++
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ewngkei------- 1065 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEWNGKEI------- 1065 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhhcchhH-------
Confidence 999999999999999999999999999999999999999999999999999999886432 356777653
Q ss_pred chhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh
Q 000650 775 VHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLS 854 (1372)
Q Consensus 775 ~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~~ 854 (1372)
+|||.||++++++|++++|+.||..|..+++|.+.|+.+|+|+.+++...+.+++.++++|||+++..
T Consensus 1066 ------------qkqwtet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1066 ------------QKQWTETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred ------------hhhhhhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChh---HHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHcc
Q 000650 855 HSTKGNLPVA---YLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYV--QAQKMFDDRMYGQLLAIIDLAVRQT 929 (1372)
Q Consensus 855 ~~~~~~~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~qe~l~~f~~ly~--~~~~~~~~~~~~~~l~il~~~~~~p 929 (1372)
....++++.. ....++..|+.+...++.+..++.+++.||.+++|++.|+ .+++.+..+.++..+..++.++.||
T Consensus 1134 ii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~sk~d~~~~e~~~~slll~~kai~yp 1213 (1610)
T KOG1848|consen 1134 IIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLSKADNFGIEEIKDSLLLVRKAIFYP 1213 (1610)
T ss_pred HhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHHhhcchhHHHHHHHHHHhhhccccC
Confidence 9988888765 6667788888888777767666778999999999999988 4567888999999999999999999
Q ss_pred cCCCCCCccccCCCCHHHHHHHHhccccCCCcccchhHHHHHHHHHhhcCCCCCCC--CccCCCCCCCCCCCcccccccc
Q 000650 930 MITHDNYEIEFGHVPPVLRTILEILPLLSPTEQLCSMWLVLLREILQYLPRSDSPL--QKKEDEEEPPSTSDNIHDVHVR 1007 (1372)
Q Consensus 930 ~~~~~~~~~d~~~~s~lQ~~vl~~l~~i~~~~~~~~~~~~~~~~l~~f~~~~~~~~--~~~~~~~~~~~t~~~~~~~~~~ 1007 (1372)
.++. +..|.++ +|+|.+|++.++.+-+++ ...+|..+++.-.-+.+.+|.-. ++.. ..+. |-.+...++...
T Consensus 1214 ~~~~--ft~d~hv-psvq~avls~ld~l~~~~-~~~~~lvLl~~sthltpafdt~l~~~k~~-~~g~-~~~e~~~das~e 1287 (1610)
T KOG1848|consen 1214 ESTS--FTLDVHV-PSVQLAVLSLLDLLISDK-FKLNHLVLLLWSTHLTPAFDTRLKITKKL-GPGL-PKEEKTIDASLE 1287 (1610)
T ss_pred CCch--hhhhccC-ChHHHHHHhhcchhccCc-cccchhHHHHHhhhhhhhhhhhhhhhhcc-CCCC-chhhhcccchhh
Confidence 8877 8888777 889999999999998843 45566666666666665555311 1111 0000 000000000000
Q ss_pred cccCCCCCCCCCCcchhhhhhhccCCcccccchHHHHHhHhHHHHHHhhhcchhhhhchhHHHHHhhccccccc-CCCCC
Q 000650 1008 TKYDKPNGTAPTTPKDASALSESSGSVTAAIPNHLFAEKLIPVVVDLFLKAPAVEKCIIFPEIIQNLGRCMTTR-RDNPD 1086 (1372)
Q Consensus 1008 ~~~~~~~a~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~l~~p~~~~~~~~~~ii~~l~~~~~~k-y~~~~ 1086 (1372)
+- ..+ ...+.-++++..+-....+++.+.+.++--+++...-+.+++-+. +++|+
T Consensus 1288 tl----~~~--------------------s~~t~rna~nkv~~~g~~~l~a~a~~~i~~f~ev~~rlkr~~~t~~r~npe 1343 (1610)
T KOG1848|consen 1288 TL----ICL--------------------SKKTFRNAENKVENHGLDFLNAGAMQHIFEFLEVPMRLKRRCPTASRVNPE 1343 (1610)
T ss_pred hh----HHh--------------------hHHHhhhchhhhchhhHHHHhhhHHHHHHhhHHHHHHHHHHcccccccCCC
Confidence 00 000 012233777777777666777777666555455444444433333 67778
Q ss_pred CccHHHHHHHHHHHHHHhHHHHHhhcccc-----ccCChHHHHHHHHHHHHHhhhheeccCC-C--CCCCCCCChhhccc
Q 000650 1087 SSLWRLAVEGFNHILVDDVTKLAANFWQD-----MKISRPARLRVWKEVADVYEIFLVGYCG-R--ALPSNSLSAVALSG 1158 (1372)
Q Consensus 1087 ~~lWk~At~~~l~il~~~l~~~~~~~~~~-----~~~~~~~~~~~W~~vvd~~~~~l~~~~~-~--~~~~~~~~~~~~~~ 1158 (1372)
.|+|++|..+|++..-.+........... +.+...+...+|++.-|+.++++.++|+ + +..+..+++....
T Consensus 1344 ~piwvlas~cF~~l~~~~fk~l~~~~~~~laet~l~lflt~~it~~rinpevd~~~~~~~cd~e~~~~ksl~l~a~~~l- 1422 (1610)
T KOG1848|consen 1344 LPIWVLASKCFVRLMINCFKDLKGSDAIELAETMLCLFLTVEITNSRINPEVDYEYVWSLCDFENSSLKSLHLLAKPHL- 1422 (1610)
T ss_pred CceeeeeHhhHHhhHHHHHHHhccccccchhhhhhheeeEEEeeeeeeCcchhhhhhhhhcccccchhhhhhhccchhh-
Confidence 99999999999999998876654431100 1122234456788888999999999887 3 2334556667788
Q ss_pred cchhhhhHHHHHhhhcccCCCCCCChHHHHhhHHHhhhccCCCCCCCccccccCccchhh--hHHHHHHHHHhhhcCCCc
Q 000650 1159 ADESLEMSILDILGDKILKSPIDAPFDVLQRLISTIDRCASRTCSLPVETVELMPAHCSK--FSLACLHKLFSLSSSDNE 1236 (1372)
Q Consensus 1159 ~dE~~di~~~~~L~~~il~~~~~~p~~~~~~l~~l~~~~~~r~~~~~~~t~~~~p~~r~r--~s~~cfd~Lf~l~s~~~~ 1236 (1372)
.+|.+++++++.++++++.+..|.|.+..+|+.+++++++.| ++.++.+.+..|+|..| .+|.||+.||+....
T Consensus 1423 ~ne~led~~i~~~~d~~l~~~~d~prn~l~rlistl~r~sqk-~ss~~fs~~~~~~hn~Rf~la~~Cf~~ll~ds~s--- 1498 (1610)
T KOG1848|consen 1423 QNECLEDEVIQYYIDLCLGSFYDQPRNTLDRLISTLNRDSQK-ASSNFFSSTESPVHNRRFRLAVDCFSILLDDSNS--- 1498 (1610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHh-hhccCccccccCccChhHHHHHHHHHHHHHhcch---
Confidence 899999999999999999999999999999999999999988 66666666565555554 677799999987753
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCChhHHHHHHHHHHHHHhcccCcccccCCCCCccccccc
Q 000650 1237 ASKWNLTRAEVSKISITVLMGRCEYILNRFLIDENDLGERNFPAARLEEIIFILQELARLKIHPDTASALPLHPVLKSGL 1316 (1372)
Q Consensus 1237 ~~~~~~~~~~la~~a~p~Ll~Rc~~~L~~yi~D~~lrG~~P~Pr~r~~El~~vL~~l~~L~~~~~~~~~~~~~~~~~~~~ 1316 (1372)
..+..|..++++++|+|+.||+.+|+||++||...|+.|+|+.|..||+++|++|..|.... +..|.+
T Consensus 1499 --~~~ntr~~vsk~~~p~L~aRc~~~Lsry~~Des~~G~lplpksr~~Eiit~lq~l~~l~~~L------~~np~l---- 1566 (1610)
T KOG1848|consen 1499 --SYENTREKVSKTIRPILQARCCWSLSRYVADESVSGYLPLPKSREMEIITVLQCLNNLPSLL------YSNPIL---- 1566 (1610)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHhhcc------ccCchh----
Confidence 12348999999999999999999999999999999999999999999999999999999883 222221
Q ss_pred ccCCCCCcccchhhhhhhhhhheecchhHHHHHHHHH--HHHHhh
Q 000650 1317 AMDENSDKRPHLLVLFPSFCELVISREARVRELVQVL--LRLITK 1359 (1372)
Q Consensus 1317 ~~~~~~~~~~hL~~lyp~l~~~~~~~~~~v~~ll~~~--l~~vg~ 1359 (1372)
.+...+.||..|+|.+|+.++++.+++....|.+ .+.+..
T Consensus 1567 ---~n~~~~~hl~~lsPs~~~~~p~~h~~~~l~~qvL~~i~~~~t 1608 (1610)
T KOG1848|consen 1567 ---YNLRKAYHLTNLSPSATSLNPAIHGQLTLKNQVLNAILGFTT 1608 (1610)
T ss_pred ---hhHHHHHHHHhccHHHHhhhhhhhcccHHHHHHHHHHHhhhc
Confidence 1267899999999999999987777766555533 444443
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=2.2e-83 Score=847.94 Aligned_cols=581 Identities=22% Similarity=0.345 Sum_probs=469.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHhccCCCCcccccccc
Q 000650 212 AVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVL 291 (1372)
Q Consensus 212 ~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafL~sL~k~t~~~~~~~~~~~~~~ 291 (1372)
..++++||+.+|+|++||+|..|+.+.|+++++.||+||+.++|+||.+||+++||+|+++|||||.++.
T Consensus 869 ~~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~---------- 938 (1780)
T PLN03076 869 VVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHS---------- 938 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCC----------
Confidence 3467999999999999999999999999999999999999999999999999999999999999999741
Q ss_pred cCCCCCCccccccccCCcCCChhHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhHHhhcCCCCC--------------
Q 000650 292 QSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHAT-------------- 357 (1372)
Q Consensus 292 ~~~gs~~~~~~~~~~~~~~l~~Knv~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~l~~p~~~-------------- 357 (1372)
| ..++.||++|+|+|++||+..||+|++||++||+|+++++++...+...
T Consensus 939 --~--------------~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~ 1002 (1780)
T PLN03076 939 --P--------------ADIKQKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNES 1002 (1780)
T ss_pred --h--------------hhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccc
Confidence 1 1278899999999999999999999999999999999999986422110
Q ss_pred ---cccccccccccc---------------c---cc-------cCc--cch-------hhHHH----HhHHhHhhhccCC
Q 000650 358 ---TQEVSTASSKLA---------------R---ES-------SGQ--YSD-------FNVLS----SLNSQLFESSALM 396 (1372)
Q Consensus 358 ---~~~~~~~~p~~s---------------~---~~-------~~~--~~d-------l~il~----~~~~~LFesS~~l 396 (1372)
.+......|... + +. +.. .++ +.++. ..++++|++|++|
T Consensus 1003 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L 1082 (1780)
T PLN03076 1003 DKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKL 1082 (1780)
T ss_pred ccccccccccccccccccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccC
Confidence 000000111110 0 00 000 011 11121 2359999999999
Q ss_pred CHHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCceehHHHHHHHHHHhccc----ccchHHHHHHHHHHHhcCCCH
Q 000650 397 HISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQ 472 (1372)
Q Consensus 397 ~~~al~~fi~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~Nl~R----~~~iW~~l~~hli~v~~~~n~ 472 (1372)
+++||++|++|||++|.+++..+. .|++|+|+||+||+++||+| |..+|+.+.+||++++||+|.
T Consensus 1083 ~~eai~~fv~AL~~vS~eEl~~~~-----------~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~ 1151 (1780)
T PLN03076 1083 NSEAIIDFVKALCKVSMEELRSPS-----------DPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENL 1151 (1780)
T ss_pred CHHHHHHHHHHHHHhhHHHHccCC-----------CCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcch
Confidence 999999999999999999986542 47899999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHH
Q 000650 473 HLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLE 552 (1372)
Q Consensus 473 ~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~ 552 (1372)
.+|.+|+|+|+|+.++++++++. .+..||+.+++||..+|..+.+.+||++|++|+.+|++
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL-------------------~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREEL-------------------ANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhh-------------------hchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 99999999999999999865431 23578888999999998999999999999999999999
Q ss_pred hcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCc---hhhHHHHHHHHHHhhhcCCCccchHhHHH
Q 000650 553 RCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIP---TDCIHECVDVTGAYSSQKTELNISLTAVG 629 (1372)
Q Consensus 553 ~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp---~~~~~~lI~tL~~F~~Q~~dlNISLtAi~ 629 (1372)
.++++|++||++||++|+.++.++++.+|+.||+++++|++||++.+| .+||.+||+||.+|++|..++||||+|++
T Consensus 1213 s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~ 1292 (1780)
T PLN03076 1213 SRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA 1292 (1780)
T ss_pred HHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHH
Confidence 999999999999999999999988999999999999999999999777 58999999999999999999999999999
Q ss_pred HHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCH
Q 000650 630 LLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERP 709 (1372)
Q Consensus 630 llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~ 709 (1372)
+||.|++++.+..... . .+........+. ........+. . .......+...+|+|||.+|.+++.|+|+
T Consensus 1293 lL~~~~~~La~~~~~~-~-~~~~~~~~~~~~-s~~~~~~~~~-~-------~~~~~~~~~~~lW~pLL~~Ls~l~~D~Rl 1361 (1780)
T PLN03076 1293 FLRFCATKLAEGDLGS-S-SRNKDKEAPPSS-PQSGKDGKQE-S-------GEFTDKDDHLYFWFPLLAGLSELSFDPRP 1361 (1780)
T ss_pred HHHHHHHHHHhccccc-c-cccccccccccc-cccccccccc-c-------cccccchhHHHHHHHHHHHHHHHhcCCcH
Confidence 9999999998652110 0 000000000000 0000000000 0 00011223458999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhcccccchhhhh
Q 000650 710 EVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQ 789 (1372)
Q Consensus 710 EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~~~~k~ 789 (1372)
|||++|++|||+||.+||+.|++++|+.||++||||||+.++.........++++.++++ .| .+.+.++
T Consensus 1362 EVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~----------~~-~~~e~~~ 1430 (1780)
T PLN03076 1362 EIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG----------DQ-GELDQDA 1430 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc----------cc-cchhhhh
Confidence 999999999999999999999999999999999999999997543322211122222211 11 1356789
Q ss_pred HH-HHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q 000650 790 WD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNS 868 (1372)
Q Consensus 790 W~-ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~ 868 (1372)
|. ||++++++++++||.+||+.+.. .-..+|+.+..|++++++.++..+.+||++++..++.+++ ++.|+.
T Consensus 1431 Wl~eT~~~AL~~lvdLft~fFd~L~~------~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~--~~~W~~ 1502 (1780)
T PLN03076 1431 WLYETCTLALQLVVDLFVKFYPTVNP------LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS--DEKWLE 1502 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC--HHHHHH
Confidence 96 99999999999999999987652 5677889999999999999999999999999999998875 999999
Q ss_pred HHHHHHHhhc
Q 000650 869 VLDVYEYALQ 878 (1372)
Q Consensus 869 ~~~~w~~~~~ 878 (1372)
+.+...+++.
T Consensus 1503 i~~~~~~lf~ 1512 (1780)
T PLN03076 1503 VVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-54 Score=546.56 Aligned_cols=536 Identities=22% Similarity=0.347 Sum_probs=452.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHhccCCCCccccccc
Q 000650 211 TAVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAV 290 (1372)
Q Consensus 211 ~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafL~sL~k~t~~~~~~~~~~~~~ 290 (1372)
++.++++|++.+|.|.+++++..+..++|......|++||+...|+++.++++..||||+++|.+||.++..
T Consensus 760 h~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdAfv~al~~ft~l~~~-------- 831 (1514)
T KOG0929|consen 760 HLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDAFVQALARFTNLHAP-------- 831 (1514)
T ss_pred cceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccHHHHHHHHHHhccCH--------
Confidence 556889999999999999999999999999999999999999999999999999999999999999997521
Q ss_pred ccCCCCCCccccccccCCcCCChhHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhHHhhcCCCCCcccc---------
Q 000650 291 LQSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEV--------- 361 (1372)
Q Consensus 291 ~~~~gs~~~~~~~~~~~~~~l~~Knv~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~l~~p~~~~~~~--------- 361 (1372)
..+..||+.++|+++.||+..||.|+.+|+.|+.|+.+++++...+...+...
T Consensus 832 ------------------~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s~~~ 893 (1514)
T KOG0929|consen 832 ------------------SEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVSQRE 893 (1514)
T ss_pred ------------------HHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhhhch
Confidence 12789999999999999999999999999999999999999854332211100
Q ss_pred cccccc--c---c---c-cccCccchhhHHHHhHHhHhhhccCCCHHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCC
Q 000650 362 STASSK--L---A---R-ESSGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIG 432 (1372)
Q Consensus 362 ~~~~p~--~---s---~-~~~~~~~dl~il~~~~~~LFesS~~l~~~al~~fi~ALc~lS~e~l~~~~~~~~~~~~~~~~ 432 (1372)
....|+ . + + +..+.......+-++ +++|++|..++.+++++|++|||++|.+++..+ ..
T Consensus 894 ~~~~~~~~~~~~~~~s~~e~~~~~~s~s~vi~~-d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~-----------~~ 961 (1514)
T KOG0929|consen 894 DYKKPGGSYDSSGDGSRIENVGEKSSVSVVIQM-DRIFTSSQRLDSEAIVDFVKALCKVSMDELLSP-----------ST 961 (1514)
T ss_pred hccCCcccccccccccchhccccchhHHHHHHh-hhhhcccccCCchHHHHHHHHHHHHHHHHhcCC-----------CC
Confidence 001110 0 0 0 000111233444445 899999999999999999999999999998764 24
Q ss_pred CceehHHHHHHHHHHhccc----ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchh
Q 000650 433 SISFSVERMISILVNNLHR----VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDE 508 (1372)
Q Consensus 433 ~~~F~L~kL~eva~~Nl~R----~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~ 508 (1372)
|++|+++|++||+.+||.| |..+|..+.+||..+++++|..+..+|+|+|+|+.++++++++.
T Consensus 962 PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsmkfle~~el------------- 1028 (1514)
T KOG0929|consen 962 PRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSMKFLERSEL------------- 1028 (1514)
T ss_pred CCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhhhhcchhhh-------------
Confidence 7899999999999999999 79999999999999999999999999999999999999876532
Q ss_pred hhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHH
Q 000650 509 VESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSL 588 (1372)
Q Consensus 509 ~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~L 588 (1372)
.++.||+.+++|+...+..+..++||+++++|+. +++++||+.||.|+..++.+..+.++..+|+.+
T Consensus 1029 ------~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v 1095 (1514)
T KOG0929|consen 1029 ------DNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETV 1095 (1514)
T ss_pred ------hhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHH
Confidence 3467888999999999999999999999999998 889999999999999999999999999999999
Q ss_pred HHHHhccCCCCch---hhHHHHHHHHHHhhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccC
Q 000650 589 RFIMNDGLSSIPT---DCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMD 665 (1372)
Q Consensus 589 qlI~~DfL~~Lp~---~~~~~lI~tL~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~ 665 (1372)
.-+..+++...-+ ++|.+|+.|+..|+.+....|+++.||.++|.|..++..+ . . . ++.. .
T Consensus 1096 ~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~-~-~-~-~~~~------------~ 1159 (1514)
T KOG0929|consen 1096 SKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG-V-Y-N-EKLK------------V 1159 (1514)
T ss_pred HHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc-c-c-h-hhcc------------c
Confidence 9999998876444 7999999999999999999999999999999999999875 1 1 0 0000 0
Q ss_pred chhhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHH
Q 000650 666 GEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFP 745 (1372)
Q Consensus 666 ~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFP 745 (1372)
+ .......|...|+|++.++..++.|.|++||+.|++.+|.|+..||+.|+.++|+.+|. ++||
T Consensus 1160 ~---------------~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fp 1223 (1514)
T KOG0929|consen 1160 G---------------KDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFP 1223 (1514)
T ss_pred c---------------cccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heee
Confidence 0 00012347889999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhcccccchHHHHHH
Q 000650 746 MLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWES 824 (1372)
Q Consensus 746 Ll~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~ 824 (1372)
+|+.+...... .+..+|. +|+++|++.++.||.+||+.+. .+-..
T Consensus 1224 IF~~~~~~~~~----------------------------~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~ 1269 (1514)
T KOG0929|consen 1224 IFDNVKLDEDE----------------------------SEKDEWLSTTCNHALQALVDLFTQFFKQLN------NLLPK 1269 (1514)
T ss_pred cccccCcccch----------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 99998632111 1224597 9999999999999999999765 24667
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhc
Q 000650 825 LLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 878 (1372)
Q Consensus 825 LL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 878 (1372)
++..+..|+++++..++.++.+||.+++..++.++. ++.|+.+.+....+++
T Consensus 1270 ~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fs--e~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1270 VLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFS--EEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccC--HhhHHHHHHHHHHHHH
Confidence 888999999999999999999999999999888774 8888887777764443
No 4
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-33 Score=347.51 Aligned_cols=558 Identities=20% Similarity=0.278 Sum_probs=400.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHhccCCCCcccccccc
Q 000650 212 AVLCISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNESDRRSAVL 291 (1372)
Q Consensus 212 ~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafL~sL~k~t~~~~~~~~~~~~~~ 291 (1372)
..+.++||..+|+|+.||++.+|+.+.++++++.|+.|+++++.+++.+|+.++.|..+.+|||||.+.+...
T Consensus 734 ~~~drdlF~~v~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~------- 806 (1386)
T KOG0928|consen 734 LVYDRDLFAMVWGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSS------- 806 (1386)
T ss_pred hhhhHHHHHHHccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCcc-------
Confidence 3468999999999999999999999999999999999999999999999999999999999999999742210
Q ss_pred cCCCCCCccccccccCCcCCChhHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhHHhhcCCCCC-------c-----c
Q 000650 292 QSPGSKRSESLVDQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHAT-------T-----Q 359 (1372)
Q Consensus 292 ~~~gs~~~~~~~~~~~~~~l~~Knv~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~l~~p~~~-------~-----~ 359 (1372)
..+.. ....+=+.|...+.+|++-+++..|+.++.+|+.|++++-++.+....|... . +
T Consensus 807 ------~~eel---~~~fged~ka~~At~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~~~~~ 877 (1386)
T KOG0928|consen 807 ------TPEEL---VLAFGEDTKARMATLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPELLKLN 877 (1386)
T ss_pred ------CchHH---HHHhcccchhHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccccccC
Confidence 00100 0123457799999999999999999999999999999999988876655321 0 0
Q ss_pred cccc-----cccccccccc----------C--c-----c--chh-------hHHHHh-HHhHhhhccCCCHHHHHHHHHH
Q 000650 360 EVST-----ASSKLARESS----------G--Q-----Y--SDF-------NVLSSL-NSQLFESSALMHISAVKSLLSA 407 (1372)
Q Consensus 360 ~~~~-----~~p~~s~~~~----------~--~-----~--~dl-------~il~~~-~~~LFesS~~l~~~al~~fi~A 407 (1372)
..+. +.++..++.+ + + . +++ +.+++. .+++|+.++.+..+++.+++++
T Consensus 878 ~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~S 957 (1386)
T KOG0928|consen 878 KLPVPQQEISINKPRKSSGLLSRFSSYLSGDEEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKS 957 (1386)
T ss_pred CCCCCccccCcccccccchHHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHH
Confidence 0000 0011000000 0 0 0 112 222222 5789999999999999999999
Q ss_pred HHHhhHHhhcCCCCCCCCCCCCCCCCceehHHHHHHHHHHhcccccchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHH
Q 000650 408 LHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELADNS---NQHLRNIALDALDQ 484 (1372)
Q Consensus 408 Lc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~Nl~R~~~iW~~l~~hli~v~~~~---n~~lr~~Avd~L~~ 484 (1372)
|...+... +...+.+..|+++.|+.|.+.|.+|+..+|..+.+|+..++..+ ...+.+.|+-.+.+
T Consensus 958 li~~s~~~-----------s~~de~s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~r 1026 (1386)
T KOG0928|consen 958 LIAASNDL-----------SMEDEESAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLR 1026 (1386)
T ss_pred HHHhcCCc-----------cCcccchHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHH
Confidence 99887652 11234567899999999999999999999999999999988764 57889999999999
Q ss_pred HHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCccc--CCh
Q 000650 485 SICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLH--YSW 562 (1372)
Q Consensus 485 Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~--sgW 562 (1372)
++.+.+..+.|- .+....+++.++.- ........-+++-..+.+++..+..+++ .||
T Consensus 1027 v~~rll~yk~~l---------------~d~l~~sl~~ll~L------~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w 1085 (1386)
T KOG0928|consen 1027 VVNRLLPYKEFL---------------SDELLDSLRILLKL------DPKILDAFLDKIAIFVSKLVKANAANVHSKDGW 1085 (1386)
T ss_pred HHHHHhhhhhhh---------------hHHHhhhHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 999888643322 01233455533211 1112235567778888899988887775 699
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhhcCC-CccchHhHHHHHHHhHHHHHhc
Q 000650 563 PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKT-ELNISLTAVGLLWTTTDFIAKG 641 (1372)
Q Consensus 563 ~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~~Q~~-dlNISLtAi~llW~isD~L~~~ 641 (1372)
.++|..|..++. +++.-..+|..+--.+.|-.+ ++++.|..||+|...|+...- ...-++..++..-.-+..+.+.
T Consensus 1086 ~~~~slL~~~~~--h~~a~~~~~~~~l~~m~e~~h-l~~~~fe~~v~~~~~fve~~~~~~~~~l~~lde~s~sg~~~~kw 1162 (1386)
T KOG0928|consen 1086 ALLFSLLELTAR--HPEADFLKFYRLLSKMSEASH-LTPDNFELYVDCGSTFVEARVGQIMRSLSLLDEMSSSGEVLDKW 1162 (1386)
T ss_pred HHHHHHHHHHhc--CCchhHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchhHH
Confidence 999999999887 444445556555555556665 556779999999999997631 0111111111110000000000
Q ss_pred cCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Q 000650 642 LVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQ 721 (1372)
Q Consensus 642 ~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfr 721 (1372)
..+.+.. .. ++. ...........+|+++++.+.++|.|.|.+|||.|++.++|
T Consensus 1163 ----~~~~~~~-~~---------~~~-------------~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr 1215 (1386)
T KOG0928|consen 1163 ----EIEAKNA-TE---------SGD-------------ESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQR 1215 (1386)
T ss_pred ----HHHHhhh-hc---------ccc-------------cccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHH
Confidence 0000000 00 000 00011122335999999999999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHHHHHHHHHHHH
Q 000650 722 TLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGI 801 (1372)
Q Consensus 722 il~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl 801 (1372)
++.+-++.|....|..||..|+||+++.+.+.....+.. ++ .+.+|.+++.+.+
T Consensus 1216 ~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~~----------------------~~----~me~t~~~~~~Ll 1269 (1386)
T KOG0928|consen 1216 IIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDASEK----------------------GN----EMEVTLLLATKLL 1269 (1386)
T ss_pred HHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhcccccc----------------------cc----hHHHHHHHHhhhh
Confidence 877889999999999999999999999998654322110 11 4678999999999
Q ss_pred HHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHhhcCCCCCC-------hhHHHHH
Q 000650 802 ARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS-----KEVSLAAINCLQTTVLSHSTKGNLP-------VAYLNSV 869 (1372)
Q Consensus 802 ~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~-----~els~a~~~sL~~lL~~~~~~~~~~-------~~~~~~~ 869 (1372)
+++|.+++..+.+.+.|..+|..+|+++++++..+. .-+..++.+.+++++..+...+.+. ...|+.+
T Consensus 1270 ~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~t 1349 (1386)
T KOG0928|consen 1270 SKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEIT 1349 (1386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHH
Confidence 999999999999999999999999999999997554 5689999999999999988655432 2366665
Q ss_pred HHHH
Q 000650 870 LDVY 873 (1372)
Q Consensus 870 ~~~w 873 (1372)
|.--
T Consensus 1350 w~~~ 1353 (1386)
T KOG0928|consen 1350 WERL 1353 (1386)
T ss_pred HHHH
Confidence 5433
No 5
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.8e-11 Score=146.73 Aligned_cols=438 Identities=15% Similarity=0.209 Sum_probs=276.5
Q ss_pred HHHHhHHhHhhh-ccCCCHHHHHHHHHHHHHhhHHhhcCCCCC------CCCCCC--CCCCCceehHHHHHHHHH---Hh
Q 000650 381 VLSSLNSQLFES-SALMHISAVKSLLSALHQLSHQCMIGTSSS------FGPTSS--QKIGSISFSVERMISILV---NN 448 (1372)
Q Consensus 381 il~~~~~~LFes-S~~l~~~al~~fi~ALc~lS~e~l~~~~~~------~~~~~~--~~~~~~~F~L~kL~eva~---~N 448 (1372)
++.+-.+|+|+. +..|.--|+..|.-++.+.|...+..+-.. ..|+.. ..+......|.|+.+..+ ..
T Consensus 845 tLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrh 924 (1777)
T KOG1846|consen 845 TLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRH 924 (1777)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 344446999997 468999999999999999998866543210 011111 111111346667777322 23
Q ss_pred ccc----ccchHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHH
Q 000650 449 LHR----VEPLWDQVVGHFLEL-ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 523 (1372)
Q Consensus 449 l~R----~~~iW~~l~~hli~v-~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~l 523 (1372)
..| ..-+|+.+..||+++ +||....+...|+.++..++.++| .++.+.++++ +++..+++||.++
T Consensus 925 kaRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelL-----tdwnEpPgfh-----FNeaLfgPFeram 994 (1777)
T KOG1846|consen 925 KARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELL-----TDWNEPPGFH-----FNEALFGPFERAM 994 (1777)
T ss_pred cccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHH-----hccCCCCCcc-----hhHhhhchHHHHH
Confidence 335 477899999999999 778888899999999999988877 4445566553 3344444555332
Q ss_pred hccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchh----H---------HHHHHHHHHH
Q 000650 524 ISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKD----L---------ITLGFQSLRF 590 (1372)
Q Consensus 524 l~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~----l---------v~~aF~~Lql 590 (1372)
....++.|++++.+..+.++++.+++.|.+||+.+|+-|.+|...+... + -.-+|+++.-
T Consensus 995 -------clElCdEdtkdQflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfea 1067 (1777)
T KOG1846|consen 995 -------CLELCDEDTKDQFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEA 1067 (1777)
T ss_pred -------HHHhccHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHH
Confidence 2357888999999999999999999999999999999999997532111 1 1246776664
Q ss_pred HHh-ccCCCCchhhHHHHHHHHHHhhhcCC-----------------CccchHhHHHHHHHhHHHHHhccC--CCChhhH
Q 000650 591 IMN-DGLSSIPTDCIHECVDVTGAYSSQKT-----------------ELNISLTAVGLLWTTTDFIAKGLV--HGISEEK 650 (1372)
Q Consensus 591 I~~-DfL~~Lp~~~~~~lI~tL~~F~~Q~~-----------------dlNISLtAi~llW~isD~L~~~~~--~~~~~~k 650 (1372)
-.+ |..+.+ .+....||-|+.+|.+... ..+.+|.|+.++-+|+..+.+... +++. -
T Consensus 1068 fLniDnipVf-anaalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPi--f 1144 (1777)
T KOG1846|consen 1068 FLNIDNIPVF-ANAALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPI--F 1144 (1777)
T ss_pred HhccCchHhH-HHHHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchh--h
Confidence 333 332222 2568899999999998653 245789999999999988876532 1100 0
Q ss_pred hhh-hcccCCC---ccccCchhhhhhhccccccccCCCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 000650 651 EAA-NQDLCSV---PKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSH 726 (1372)
Q Consensus 651 ~~~-~~~~~s~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~ 726 (1372)
..+ -.+..+. ...++..-.|..-..++-. .........-.+|+.++..+.....+.-|.-+.--+..+|+.+..-
T Consensus 1145 hlghladLprkcldqsamdeDgIEsphgpfpvl-edfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDi 1223 (1777)
T KOG1846|consen 1145 HLGHLADLPRKCLDQSAMDEDGIESPHGPFPVL-EDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDI 1223 (1777)
T ss_pred hhhhhhcchHHHHhhhhcccCCccCCCCCcccc-ccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHh
Confidence 000 0000000 0001111111100000000 0001112234799999999987777766777888899999988742
Q ss_pred -----cCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhcccccchhhhhHHH---HHHHHH
Q 000650 727 -----GQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRNTAQKQWDE---TLVLVL 798 (1372)
Q Consensus 727 -----g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~~~~k~W~E---T~vlaL 798 (1372)
|..|.. .|.-.+++|.+..+.... +.+..-|+- -...++
T Consensus 1224 skkPlGadfGg----vamsaliLPvmqkWiRRl-----------------------------dkdesywdmakaifKhaI 1270 (1777)
T KOG1846|consen 1224 SKKPLGADFGG----VAMSALILPVMQKWIRRL-----------------------------DKDESYWDMAKAIFKHAI 1270 (1777)
T ss_pred ccCCCCCCCcc----chhhHHHHHHHHHHHHHh-----------------------------chhhhhHHHHHHHHHHHH
Confidence 555554 788999999999886321 111244652 235567
Q ss_pred HHHHHHHHhhhhhccccc-------chHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q 000650 799 GGIARLLRSFFPFLANLS-------NFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLD 871 (1372)
Q Consensus 799 ~gl~~lf~~~~~~l~~l~-------~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~ 871 (1372)
+.-+.+.-.++......+ ....+....+.+...|.......+..++.+|.+-+|...+++| +++.|+.+..
T Consensus 1271 GaccelVidhielekhSswddRlerdIcalikdcfefdkaCaaaPaefiliagcsciryvlvtagpkF--seemWniacc 1348 (1777)
T KOG1846|consen 1271 GACCELVIDHIELEKHSSWDDRLERDICALIKDCFEFDKACAAAPAEFILIAGCSCIRYVLVTAGPKF--SEEMWNIACC 1348 (1777)
T ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHhhcchheeeeeccCccc--cHHHHHHHHH
Confidence 766777766666443221 1122344555666666666677788889999998887766665 5888987665
Q ss_pred HHH
Q 000650 872 VYE 874 (1372)
Q Consensus 872 ~w~ 874 (1372)
+..
T Consensus 1349 aLa 1351 (1777)
T KOG1846|consen 1349 ALA 1351 (1777)
T ss_pred HHH
Confidence 443
No 6
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.47 E-value=4e-14 Score=132.75 Aligned_cols=76 Identities=26% Similarity=0.510 Sum_probs=72.1
Q ss_pred hhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 000650 516 LRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 591 (1372)
Q Consensus 516 ~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI 591 (1372)
+..||+.+++||..++..+++.|||+++|+|+.++++++|++|++||++||++|+.++.+.++++++.||+++++|
T Consensus 11 ~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 11 NFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred ccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 3568999999999999999999999999999999999999999999999999999999988899999999999976
No 7
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.42 E-value=4.7e-13 Score=142.60 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=83.9
Q ss_pred hhhHHHhhhhhcccccCCCCCCCchhH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HhcCCC-chhHHHHHHHHH
Q 000650 5 ISCGVLTFSIVFNFIQNEGETGEPYFR--RLVLRSVAHIIRLYSSSLITECEVFLSMLVK-VTFLDL-PLWHRILVLEIL 80 (1372)
Q Consensus 5 ~~~pll~~~l~~~~~~~~~~~~~p~F~--~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~-~ld~d~-~~W~RvL~LEv~ 80 (1372)
.+||.|++.+. ... |+ .+.+|++.+|+++|.+.|+.|+|+|++.+++ +++++. |.|||+++||++
T Consensus 73 ~l~~~Ll~~~~----------~~~-~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l 141 (168)
T PF12783_consen 73 DLCPALLKNLS----------SSD-FPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEIL 141 (168)
T ss_pred HHHHHHHHHHh----------hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 48999999998 322 44 3689999999999999999999999999999 788887 679999999999
Q ss_pred hhhccChHHHHHHHHhccCCCCCcchH
Q 000650 81 RGFCVEARTLRLLFQNFDMNPKNTNVV 107 (1372)
Q Consensus 81 r~l~~d~~llr~i~~~YD~~~~~k~I~ 107 (1372)
+++|+||.++..||.+||++.+++|||
T Consensus 142 ~~l~~~p~~l~~lf~NYDCd~~~~nif 168 (168)
T PF12783_consen 142 RELCKDPQFLVDLFVNYDCDLNSKNIF 168 (168)
T ss_pred HHHHhChhHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999999999996
No 8
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=6.8e-07 Score=114.41 Aligned_cols=563 Identities=15% Similarity=0.099 Sum_probs=275.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCCCchhHHHHHHHHHhhhccChHHHHHHHHhccC
Q 000650 21 NEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVT-FLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDM 99 (1372)
Q Consensus 21 ~~~~~~~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~l-d~d~~~W~RvL~LEv~r~l~~d~~llr~i~~~YD~ 99 (1372)
+.+..--|+|-|.+.|.+.++.+-+.+....+||+++-.+--++ ......|++.+..+++..++.+..++-.+|..|+.
T Consensus 272 ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~ 351 (1610)
T KOG1848|consen 272 LLALNVVPYAERLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIG 351 (1610)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccC
Confidence 33444455665557788888888888777777776655444333 22335688888888888888888888888888888
Q ss_pred CCCCcchHHHHHHHHHHHHhhhccccchhhhhhhccccccccccceEee---ecccccCccccccchhhhHHHHHHHHHH
Q 000650 100 NPKNTNVVEGMVKALARVVSSVQFQETSEESLSAVAGMFSSKAKGIEWI---LDNDASNAAVLVASEAHSITLAIEGLLG 176 (1372)
Q Consensus 100 ~~~~k~I~~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~~sk~~gi~~s---l~~d~~~~~~~~~~~~~~i~~~~~~L~~ 176 (1372)
-+.++.+..-+-......--. ..-..... .+-+..|+.-+.|- -+-++..+.++++...|.+...+.+|++
T Consensus 352 v~~~v~la~~lk~~s~~~~~~-----p~~l~~~~-~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy~~lv~ 425 (1610)
T KOG1848|consen 352 VPVAVFLASLLKFDSMDLELW-----PRFLDFLF-LKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVYKELVG 425 (1610)
T ss_pred cchhhhHHHHhhhhhcCcccC-----ccHhHHHh-hccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHHHHHHH
Confidence 887765544333222111100 00001111 12222333222221 0111222445566555666666666665
Q ss_pred HHH-Hhhccccc-ccccCCCCCCCCCCCC--CCCCccc-------hhHHHHHHHHHhhHHHHHHHHhhhhccCCHHHHHH
Q 000650 177 VVF-TVATLTDE-AVDVGELESPRCDYDP--LPKCMGE-------TAVLCISMVDSLWLTILDALSLILSRSQGEAIILE 245 (1372)
Q Consensus 177 ~~~-~v~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~m~~~~W~~lLaalS~~L~~s~De~~~~~ 245 (1372)
-++ .+.+...+ ..+.|+.+-...+.+- ..++.+. ....-+..+-.-|-...-+.| +++.
T Consensus 426 ti~nsi~e~l~k~s~esg~~eFt~k~k~Ie~~~dnds~stavl~~l~~~~~~li~e~~~ss~~avS----------t~~~ 495 (1610)
T KOG1848|consen 426 TISNSIQEMLNKSSIESGGSEFTSKEKGIELREDNDSMSTAVLLQLSFSNKVLIPEGLYSSRMAVS----------TLLK 495 (1610)
T ss_pred hhhHHHHHHHHHhHHhhcCccchhhhcCceeeccCchHHHHHHHHHHhhhhhhccccchhhhHHHH----------HHHH
Confidence 443 33322111 1122211000000000 0111110 011112233333433444444 4455
Q ss_pred HHHHHHHHHHHHccc----------CCcchHHHHHHHHHHH-hccC------CCCccccc--------cccc-CCCCCCc
Q 000650 246 ILKGYQAFTQACGVL----------HAVEPLNSFLASLCKF-TINI------PNESDRRS--------AVLQ-SPGSKRS 299 (1372)
Q Consensus 246 lL~gfq~~a~vag~L----------~L~~~rDafL~sL~k~-t~~~------~~~~~~~~--------~~~~-~~gs~~~ 299 (1372)
..+++++..+-++.+ ++..++|+ ++..- +.++ +.+..+.. ++.. .+|-..+
T Consensus 496 ~a~~v~~l~~~~~~~s~k~~l~~~~kLe~i~~a---~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~A 572 (1610)
T KOG1848|consen 496 RAQDVLHLYIEDEVLSNKCPLPRQTKLEIIFDA---VLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSA 572 (1610)
T ss_pred HHHHHHHHhhhhhhhccCCccccceeehhHHHH---HhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccc
Confidence 555666666555544 55556655 11111 1110 00100000 0000 1111100
Q ss_pred c-cc---c-cccCCcCCChhHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHhHHhhcCCCCCcc--ccccccccccccc
Q 000650 300 E-SL---V-DQKDNIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQ--EVSTASSKLARES 372 (1372)
Q Consensus 300 ~-~~---~-~~~~~~~l~~Knv~~lraLlnla~~lG~~L~~SW~~IL~tlq~ld~~l~~p~~~~~--~~~~~~p~~s~~~ 372 (1372)
. .. + .-.....+.+|-+.-+|+|...+...|...+++|++-|+||+|.++++++|.+..- ..+...+-++.
T Consensus 573 de~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~-- 650 (1610)
T KOG1848|consen 573 DEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTN-- 650 (1610)
T ss_pred hhHHHHHHHhhCCcccCCccHHHHHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCcccccc--
Confidence 0 00 0 00144578999999999999999999999999999999999999999987644211 11112222333
Q ss_pred cCccchhhHHHHhHHhHhhhccCCCHHHHHHHHHHHHHhhHH-hh--cCCC----CCCCCCCCCC-CCC-----ceehHH
Q 000650 373 SGQYSDFNVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQ-CM--IGTS----SSFGPTSSQK-IGS-----ISFSVE 439 (1372)
Q Consensus 373 ~~~~~dl~il~~~~~~LFesS~~l~~~al~~fi~ALc~lS~e-~l--~~~~----~~~~~~~~~~-~~~-----~~F~L~ 439 (1372)
.|+....+....+|+....|..+-+.-+... -.++.- .| .+.. +..+.++.+. ..+ ..+.+.
T Consensus 651 ----snvqa~rsf~t~~~~~~~sy~~sw~llm~t~-~~ls~~~~m~p~qt~l~v~t~~~~hp~~p~~~~~~~ynd~~~ls 725 (1610)
T KOG1848|consen 651 ----SNVQASRSFSTLMDYELVSYKNSWSLLMYTT-SSLSQPAYMEPLQTLLAVITSSSVHPIQPLTAPRQSYNDDLLLS 725 (1610)
T ss_pred ----chHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHhcchhhcCHHHhhHHHHhcCCCCCCCcchhhHHHHHHHHHHH
Confidence 4666666666788999999998766544443 222211 11 0000 0111122111 011 135677
Q ss_pred HHHHHHHHhcc-c-----ccchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhh
Q 000650 440 RMISILVNNLH-R-----VEPLWDQVVGHFLELADN---SNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVE 510 (1372)
Q Consensus 440 kL~eva~~Nl~-R-----~~~iW~~l~~hli~v~~~---~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~ 510 (1372)
++.+-+..|.. | ...+|..+.-+....+.. .+..+|.+-...-.......+. +.. ++....
T Consensus 726 sl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~--e~s--------nq~~~~ 795 (1610)
T KOG1848|consen 726 SLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILK--ELS--------NQFKII 795 (1610)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHH--Hhh--------hHHHHH
Confidence 77776554443 3 478898888776665543 2445544433221111111110 000 000000
Q ss_pred hhhhhhhhHHHHHhccHH-----HH---------hccCC--cHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhh
Q 000650 511 SRHGDLRSIECAVISPLR-----VL---------YFSTQ--STDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVAD 574 (1372)
Q Consensus 511 ~~~~~~~~lq~~ll~pl~-----~L---------~~~~~--~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~ 574 (1372)
..-.+++...+..+.... .+ +..+. ..++-.+..-.+..+...+++...+.|+.+++||++++.
T Consensus 796 naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge 875 (1610)
T KOG1848|consen 796 NAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE 875 (1610)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch
Confidence 111123333333333222 11 11111 225555666677888888898889999999999998864
Q ss_pred cCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhhcCCCccchHhHHHHHHHh-HHHHHhc
Q 000650 575 ASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTT-TDFIAKG 641 (1372)
Q Consensus 575 ~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~~Q~~dlNISLtAi~llW~i-sD~L~~~ 641 (1372)
-++.- + ......++.+..|+.++ ..||.=-+-.-|..| +|||+.-
T Consensus 876 ----~ll~~-w----------------~sV~eml~s~~d~~~ek-ek~ivrlgf~~lrlIssDfLqSL 921 (1610)
T KOG1848|consen 876 ----HLLHG-W----------------QSVFEMLRSATDFGSEK-EKKIVRLGFSCLRLISSDFLQSL 921 (1610)
T ss_pred ----hhccc-c----------------HHHHHHHHHHhhccchh-hhhHHHhhhhhhhhhhhcchhcC
Confidence 12211 1 12333344555666654 444433344444544 6888764
No 9
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.74 E-value=0.0006 Score=94.30 Aligned_cols=95 Identities=24% Similarity=0.433 Sum_probs=85.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHhcCC-Cc-hhHHHHHHHHHhhhccChHHHHHHHHhccCC
Q 000650 24 ETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSM-LVKVTFLD-LP-LWHRILVLEILRGFCVEARTLRLLFQNFDMN 100 (1372)
Q Consensus 24 ~~~~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~Lsl-Li~~ld~d-~~-~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~ 100 (1372)
+...|-|- ..+||...|+.+|..-|+.|.|||+.. +.++++.. .+ .=||.++||++..||.||.++-.||-+||.+
T Consensus 419 S~~~~vf~-lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD 497 (1780)
T PLN03076 419 SSLMIIFQ-LSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCD 497 (1780)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCC
Confidence 34556687 479999999999999999999999997 57888864 34 6899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHh
Q 000650 101 PKNTNVVEGMVKALARVVS 119 (1372)
Q Consensus 101 ~~~k~I~~~l~~~l~~~~~ 119 (1372)
.+..|||+++++.|.+.++
T Consensus 498 ~~~~NifE~lv~~Lsk~a~ 516 (1780)
T PLN03076 498 VNSSNIFERMVNGLLKTAQ 516 (1780)
T ss_pred CCCchHHHHHHHHHHHHhc
Confidence 9999999999999999876
No 10
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=98.72 E-value=1.7e-07 Score=121.58 Aligned_cols=508 Identities=17% Similarity=0.159 Sum_probs=322.8
Q ss_pred HHHHHHhhHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHhccCCCC-cccccccccCC
Q 000650 216 ISMVDSLWLTILDALSLILSRSQGEAIILEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINIPNE-SDRRSAVLQSP 294 (1372)
Q Consensus 216 ~~m~~~~W~~lLaalS~~L~~s~De~~~~~lL~gfq~~a~vag~L~L~~~rDafL~sL~k~t~~~~~~-~~~~~~~~~~~ 294 (1372)
+.+|+..|+-+++++...+....++-+....+.+.+++..+|..+.+..|||+|+.++++++.++..+ ++... ...+
T Consensus 492 ~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S~~~~~~--~~~~ 569 (1024)
T COG5307 492 ATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLINSSVSEGPY--LFIP 569 (1024)
T ss_pred HhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCccccCcccccc--ccCc
Confidence 46777777777777777777777777777788888888999999999999999999999999975332 11100 0000
Q ss_pred CCCC--ccccccccCCcCCChhHHHHHHHHHHHHHHhcC--cc-cCCHHHHHHHHHHhHHhhcCCCCCcccccccccccc
Q 000650 295 GSKR--SESLVDQKDNIVLTPKNVQALRTLFNIAHRLHN--VL-GPSWVLVLETLAALDRAIHSPHATTQEVSTASSKLA 369 (1372)
Q Consensus 295 gs~~--~~~~~~~~~~~~l~~Knv~~lraLlnla~~lG~--~L-~~SW~~IL~tlq~ld~~l~~p~~~~~~~~~~~p~~s 369 (1372)
.... ..+..+.....+-.-++..+.-.++.+....|+ .+ ...|.++-..-..+.......+... ..|...
T Consensus 570 ~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~~~-----~~~~~~ 644 (1024)
T COG5307 570 SEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDGKH-----FSPSIV 644 (1024)
T ss_pred cccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCCcc-----cccccc
Confidence 0000 000000001122233888888888888877776 33 4477776655444443322111000 011111
Q ss_pred ccccCccchhhHHHHhHHhHhhhccCCCH-HHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCceehHHHHHHHHHHh
Q 000650 370 RESSGQYSDFNVLSSLNSQLFESSALMHI-SAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNN 448 (1372)
Q Consensus 370 ~~~~~~~~dl~il~~~~~~LFesS~~l~~-~al~~fi~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~N 448 (1372)
+.... .+ +....++++...+.++. .++..++++++..... .| .+++.++++..|
T Consensus 645 ~~~~~--~~---~~~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d~~-----------------~~---~~q~~v~~s~~n 699 (1024)
T COG5307 645 KKLGS--PE---LPKLNPDISSGKSKLSVWSAVLSVFKAILSSDLP-----------------SP---PLQKEVDISKKN 699 (1024)
T ss_pred ccccC--cc---ccccCcccccccccccccchHHHHHHHHHhccCC-----------------CC---CcHHhhhHHhhh
Confidence 10000 01 11122566777777777 7899999999882110 11 788999999999
Q ss_pred cccc---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhc
Q 000650 449 LHRV---EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVIS 525 (1372)
Q Consensus 449 l~R~---~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~ 525 (1372)
+.++ ..+|..+....-.+..+.+..+..++.+..+++...+.+.+ +. ....|+..++.
T Consensus 700 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~ie------e~-------------~~~~f~~~~~~ 760 (1024)
T COG5307 700 VDIIKSESKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIE------EL-------------SDFGFQIALLL 760 (1024)
T ss_pred hhhhhhhhHHHhhcccchhhccccccccchhcccchhhhhccccCChh------hh-------------cchhHHHHHhc
Confidence 9984 56899999999999999999999999999999977654332 11 22356666777
Q ss_pred cHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHH
Q 000650 526 PLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH 605 (1372)
Q Consensus 526 pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~ 605 (1372)
|+.........+.|++..+.|.+.++++....+.+| +.+|+++....... .++..++.+.- .|.+ .-+.++|.
T Consensus 761 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~---~~~~~~s~~~~--~e~v-~s~~n~f~ 833 (1024)
T COG5307 761 PFEYSVEVSLVVAVKELVIGCSDNLLTEAASSIASG-KTIFEISAYEDLSS---TLRYILSSLSN--DELV-LSQENLFI 833 (1024)
T ss_pred cccccccccceeeeeeeehhhHHHHHHHHHHhhhcc-ccceeeeecccccc---hhhhHHHHhcc--hhhh-hChhhHHH
Confidence 776655566677999999999999999999999999 99999887554311 13333333322 1222 23336677
Q ss_pred HHHHHHHHhhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCC
Q 000650 606 ECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIG 685 (1372)
Q Consensus 606 ~lI~tL~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~ 685 (1372)
..+-+-......+.++-+.+.++.++.........+ ...+. .. ...
T Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-k~~~~--~~-------------------------------~~~ 879 (1024)
T COG5307 834 ELLSSKNEGKQNDKNLELRLHSVDYLRFLLPNVENW-KNLSS--VL-------------------------------SAN 879 (1024)
T ss_pred HHHhhhHHHHHhccchhhhhccHHHHHHHhHHHHHH-HHHHH--HH-------------------------------Hhh
Confidence 776666666667777778877777766554444432 10000 00 000
Q ss_pred cchhhhhHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccc
Q 000650 686 MVDRDKLLFAVFSLLKKLGAD-ERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 764 (1372)
Q Consensus 686 ~~~~~~LW~~LL~~L~~L~~D-~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~ 764 (1372)
.. ..+.|.+.|.++.++... .-.++ |..+..+++.+..+.|+.+.+.-++|++....-....
T Consensus 880 ~~-~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~-------- 942 (1024)
T COG5307 880 SN-FSKDIFSYLEKYVKIGSSALDLEN--------FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSD-------- 942 (1024)
T ss_pred hh-hhHHHHHHHHHHHHhchhhhhHHH--------HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCccc--------
Confidence 01 247899999988877643 44555 8888999999999999999999999888755411110
Q ss_pred cccccCCCccchhhcccccchhhhhHH-HHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHH
Q 000650 765 KELGTRGGKAVHMLIHHSRNTAQKQWD-ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLA 843 (1372)
Q Consensus 765 ~~l~~~~~~~~~~l~h~sr~~~~k~W~-ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a 843 (1372)
+. .+. ++...-.|. .+.+.++.....+|...++.+.. ..| .+.+...| .+.-+++...
T Consensus 943 -~~--------~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~-----~~~--~~~l~~~c-~~~~~~~~~~ 1001 (1024)
T COG5307 943 -KT--------NLD----NDEIELVWASTDLLAALKEFIELFNSIFEKLEI-----LAG--KLILLHQC-LNNCDQLGLG 1001 (1024)
T ss_pred -cc--------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHhh-cCcHhhhhhh
Confidence 10 111 223446777 56677888888888888886551 234 34444555 4455678888
Q ss_pred HHHHHHHHHH
Q 000650 844 AINCLQTTVL 853 (1372)
Q Consensus 844 ~~~sL~~lL~ 853 (1372)
+++++++.+-
T Consensus 1002 ~~~~~~~~~~ 1011 (1024)
T COG5307 1002 AIETLEEILW 1011 (1024)
T ss_pred hHHHHhhhhH
Confidence 8888887653
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=87.58 E-value=89 Score=39.39 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=90.6
Q ss_pred eehHHHHHHHHHHhccc-ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhh
Q 000650 435 SFSVERMISILVNNLHR-VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRH 513 (1372)
Q Consensus 435 ~F~L~kL~eva~~Nl~R-~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~ 513 (1372)
.+.+.|++-++...+.. .....-.+++++..=..|+|+.+|..|..+|..+...-+
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~----------------------- 111 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEM----------------------- 111 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccch-----------------------
Confidence 57888999988776665 567899999999999999999999999999887643211
Q ss_pred hhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 000650 514 GDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 591 (1372)
Q Consensus 514 ~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI 591 (1372)
.+ .+..++..+. .+.+..||+..+-|+.++.+.+.+.+..+| ++.+.....+++...+..|...+.-|
T Consensus 112 -----~~-~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 112 -----AE-PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -----HH-HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -----hh-HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 11 1223333442 356779999999999999999888776554 44444444555667777888877777
No 12
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=82.28 E-value=1.3e+02 Score=37.32 Aligned_cols=277 Identities=13% Similarity=0.115 Sum_probs=134.8
Q ss_pred cchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHh
Q 000650 453 EPLWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 531 (1372)
Q Consensus 453 ~~iW~~l~~hli~v~~~~-n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 531 (1372)
..+=+.++..+..++.+| |+..--|--+++.-++....+. +......||..++-++..+.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-------------------~~~~v~~~E~~L~P~f~~IL 126 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-------------------DPEAVSQFEEALFPPFQEIL 126 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-------------------GHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-------------------ChhHHHHHHHHHHHHHHHHH
Confidence 444556666777788887 8999999889888877632211 11233467777776666654
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcC-CcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHH
Q 000650 532 FSTQSTDVRAGTLKILLHVLERCG-EKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDV 610 (1372)
Q Consensus 532 ~~~~~~dIr~~iL~~L~~iL~~~g-~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~t 610 (1372)
..+ -.|.--.+++-+..+++.+. ..+......+|..|-+..- =.- ..++..++..
T Consensus 127 q~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l----------------------We~-~gniPalvrL 182 (435)
T PF03378_consen 127 QQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL----------------------WER-RGNIPALVRL 182 (435)
T ss_dssp HTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG----------------------GGS-TTTHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch----------------------hcc-CCCcCcHHHH
Confidence 432 12555566677777777765 4444444444444432211 111 1246677777
Q ss_pred HHHhhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhh
Q 000650 611 TGAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRD 690 (1372)
Q Consensus 611 L~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 690 (1372)
|.+|.+.....-.+-.-+.-++++-..|-.... . ...+.. .-+.....++. .... .-..
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~---~--D~~gF~------------LL~~iv~~~p~---~~l~-~yl~ 241 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKA---N--DHYGFD------------LLESIVENLPP---EALE-PYLK 241 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT-TT---C--HHHHHH------------HHHHHHHHS-H---HHHG-GGHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC---c--chHHHH------------HHHHHHHHCCH---HHHH-HHHH
Confidence 777777543322222333444555555554311 0 000000 00011100100 0000 1234
Q ss_pred hhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000650 691 KLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG--------QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 762 (1372)
Q Consensus 691 ~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g--------~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~ 762 (1372)
.+|..+|.+|.+- .-....++=+..+.-....|| +...+..|..++.+++.|-++++...
T Consensus 242 ~I~~lll~RLq~s---kT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------- 309 (435)
T PF03378_consen 242 QIFTLLLTRLQSS---KTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------- 309 (435)
T ss_dssp HHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH---------
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc---------
Confidence 6888888888652 222333333333232323445 34566778888888888877665311
Q ss_pred cccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCc
Q 000650 763 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGS 837 (1372)
Q Consensus 763 ~~~~l~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~ 837 (1372)
.| +.++.=|+++++..- +.+.. ...+.|..+++-+-+++....
T Consensus 310 ----------------------------~e-rKi~~vGltkLL~es-~~~~~--~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 310 ----------------------------IE-RKICAVGLTKLLCES-PAFLS--EYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp ----------------------------HH-HHHHHHHHHHHHHSS-TTHHH--H-CHHHHHHHHHHHHHHHTTS
T ss_pred ----------------------------ch-hhHHHHHHHHHHhcc-Hhhhh--HHHHHHHHHHHHHHHHHcCCc
Confidence 02 233445666666431 11111 145689999998888776544
No 13
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.26 E-value=1.1e+02 Score=33.88 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHh--cccccchHHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhh
Q 000650 437 SVERMISILVNN--LHRVEPLWDQVV---GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVES 511 (1372)
Q Consensus 437 ~L~kL~eva~~N--l~R~~~iW~~l~---~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~ 511 (1372)
.+.+|..++..| .+....+++.+. .-+.....+.+..+...|...+..++... +.
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l-~~------------------- 86 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL-GS------------------- 86 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH-GG-------------------
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hH-------------------
Confidence 566777777766 223456666666 33334444457788888999888887632 11
Q ss_pred hhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 000650 512 RHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFI 591 (1372)
Q Consensus 512 ~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI 591 (1372)
.+.++-..++.++... ......-|++..-+||..|++.++ .+=+.++.++......+++.+-..+.+.+..+
T Consensus 87 ---~~~~~~~~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 87 ---HFEPYADILLPPLLKK-LGDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp ---GGHHHHHHHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0112212344444444 234566899999999999999766 11145588888777766666667788888888
Q ss_pred HhccC---CCCchh-hHHHHHHHHHHhhhcCCCccchHhHHHHHHHhHHHHHhc
Q 000650 592 MNDGL---SSIPTD-CIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAKG 641 (1372)
Q Consensus 592 ~~DfL---~~Lp~~-~~~~lI~tL~~F~~Q~~dlNISLtAi~llW~isD~L~~~ 641 (1372)
+..+- ..+... .+..++.++.++..-. +..+--.|-..||.+......+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence 87654 222222 3577888888887653 6666666888888876665543
No 14
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=3.7 Score=56.35 Aligned_cols=99 Identities=21% Similarity=0.386 Sum_probs=80.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHhhhccChHHHHHHHHhcc
Q 000650 21 NEGETGEPYFRRLVLRSVAHIIRLYSSSLITECEVFLSMLVKVTFLDL--PLWHRILVLEILRGFCVEARTLRLLFQNFD 98 (1372)
Q Consensus 21 ~~~~~~~p~F~~~~~Ri~~~ll~~~~~~L~~E~Ei~LslLi~~ld~d~--~~W~RvL~LEv~r~l~~d~~llr~i~~~YD 98 (1372)
...+.-++-|-+ -+=|...|+..|-.-++.|.|||.+.++--+.... +.=|+-..+=++.++|.||..+-.||-+||
T Consensus 335 n~vS~~~~vfe~-s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~~Vdi~vnyd 413 (1514)
T KOG0929|consen 335 NSVSNVPMVFEL-SCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTSSFQQKMMVLRILTRICADPQTLVDIYVNYD 413 (1514)
T ss_pred cccccchHHHHH-HHHHHHHHHHhcccccccccccchhhhhhhhhhcCCCcccchhHHHHHHhhhcCCCccccccccCCc
Confidence 444555566652 45588899999999999999999999887653222 445666677789999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhh
Q 000650 99 MNPKNTNVVEGMVKALARVVSS 120 (1372)
Q Consensus 99 ~~~~~k~I~~~l~~~l~~~~~~ 120 (1372)
...+..|||+-+++.+.+.++.
T Consensus 414 cd~~~~nifer~v~~ltk~a~g 435 (1514)
T KOG0929|consen 414 CDSNSQNIFERLVNGLSKIAQG 435 (1514)
T ss_pred cccCCccHHHHHHhhHHHhhcC
Confidence 9999889999999999988864
No 15
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.93 E-value=6.6 Score=29.43 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 000650 697 FSLLKKLGADERPEVRNSAIRTLFQTLG 724 (1372)
Q Consensus 697 L~~L~~L~~D~R~EVRn~AIqTLfril~ 724 (1372)
+-.+.++..|+-++||..|+++|-++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999987764
No 16
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.66 E-value=58 Score=41.60 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhcccccc
Q 000650 705 ADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 784 (1372)
Q Consensus 705 ~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~ 784 (1372)
.-+..+||..|...||..+---|..+..+.-+.++.+-.. .+.++.+. +
T Consensus 184 ~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~-~l~~LL~d------------~------------------ 232 (1005)
T KOG1949|consen 184 KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFE-ELYSLLED------------P------------------ 232 (1005)
T ss_pred ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHH-HHHHHhcC------------C------------------
Confidence 3467899999999999999888988988888888766433 33334211 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhh
Q 000650 785 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSI-LNGSKEVSLAAINCLQTTVLSH 855 (1372)
Q Consensus 785 ~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~-~~~~~els~a~~~sL~~lL~~~ 855 (1372)
.-.-+..+..|+++++..|+..+-. ..-..+|.++..-+ .....+|-.++++++..++-..
T Consensus 233 -----~p~VRS~a~~gv~k~~s~fWe~iP~-----~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 233 -----YPMVRSTAILGVCKITSKFWEMIPP-----TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 1135556788999999999987653 34566777666554 3444688899999988877543
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=71.28 E-value=2.8e+02 Score=34.88 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCc
Q 000650 457 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 536 (1372)
Q Consensus 457 ~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~ 536 (1372)
..+.+.+.....+.+..++..|+..+..+.. .+ ..++ .+..++..+.. +.+
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~------------------~~---------~~~~-~~~~~L~~lL~-s~~ 280 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP------------------SP---------ELLQ-KAINPLIKLLS-SSD 280 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------------------SH---------HHHH-HHHHHHHHHHT-SSS
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhc------------------ch---------HHHH-hhHHHHHHHhh-ccc
Confidence 4577777777777788888888887654311 00 0122 34456666655 678
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhh
Q 000650 537 TDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSS 616 (1372)
Q Consensus 537 ~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~~ 616 (1372)
.++|-.+|++|.++...+...+. ....++..+. .+.+..+.+.+.+.|..+++ .+++..+++.|.+|+.
T Consensus 281 ~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~ 349 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIRKKALDLLYKLAN-------ESNVKEILDELLKYLS 349 (526)
T ss_dssp HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred chhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHH
Confidence 89999999999999988755555 4444433333 12355677888888888875 4678889999999995
Q ss_pred cCCCccc
Q 000650 617 QKTELNI 623 (1372)
Q Consensus 617 Q~~dlNI 623 (1372)
...|..+
T Consensus 350 ~~~d~~~ 356 (526)
T PF01602_consen 350 ELSDPDF 356 (526)
T ss_dssp HC--HHH
T ss_pred hccchhh
Confidence 4434443
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.00 E-value=4.1e+02 Score=36.40 Aligned_cols=163 Identities=12% Similarity=0.194 Sum_probs=95.1
Q ss_pred HHHhcccccchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHH
Q 000650 445 LVNNLHRVEPLWDQVVGHFLELADN-SNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAV 523 (1372)
Q Consensus 445 a~~Nl~R~~~iW~~l~~hli~v~~~-~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~l 523 (1372)
++.|..|-.. +..-|..+..+ .++.+|..|+.-+|+++.+.-.+ .+ ...+ . .+
T Consensus 27 ~l~~~~~~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~--------l~-----~e~~-----~----si 80 (1075)
T KOG2171|consen 27 ALETLAKTEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSR--------LS-----AEVQ-----Q----SI 80 (1075)
T ss_pred HHHHhhcccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhc--------CC-----HHHH-----H----HH
Confidence 3444445444 44444455554 58999999999999999874311 11 1011 1 12
Q ss_pred hccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhh
Q 000650 524 ISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDC 603 (1372)
Q Consensus 524 l~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~ 603 (1372)
.+.+.......+..-||..+-+.+.+|-.+-..- +|+-++..|-.+....+..+=..||-+|.-+...|=..+. ..
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~-~~ 156 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ-PH 156 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-hh
Confidence 2222222344556688888888888876654443 8999999887766656677888888888777665433322 12
Q ss_pred HHHHHHHHHHhhhcCCCccchHhHHHHHHHhHHHH
Q 000650 604 IHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 638 (1372)
Q Consensus 604 ~~~lI~tL~~F~~Q~~dlNISLtAi~llW~isD~L 638 (1372)
+.++...+.+-. ++...+|-.+|+.-+-.+..++
T Consensus 157 ~~~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 157 LDDLLRLFSQTM-TDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHh
Confidence 333333333332 2233347666665555555555
No 19
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.29 E-value=87 Score=36.14 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCccc-CChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhh
Q 000650 537 TDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYS 615 (1372)
Q Consensus 537 ~dIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~ 615 (1372)
...|..+++.+..+++++.+.++ .|=..|..++..+.+++++.-+-.+|+.++.|+..|- + .+...++.|++..|-
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-~~~~e~lFd~~~cYF 172 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-SEFAEDLFDVFSCYF 172 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-chhHHHHHHHhhhee
Confidence 37799999999999999888885 4667788999999888899999999999999998774 2 445666777666653
No 20
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=66.41 E-value=12 Score=27.92 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000650 459 VVGHFLELADNSNQHLRNIALDALDQSIC 487 (1372)
Q Consensus 459 l~~hli~v~~~~n~~lr~~Avd~L~~Li~ 487 (1372)
+..+|.+..+++++.+|..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999988864
No 21
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=97 Score=39.54 Aligned_cols=132 Identities=14% Similarity=0.201 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhccc--ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhh
Q 000650 437 SVERMISILVNNLHR--VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHG 514 (1372)
Q Consensus 437 ~L~kL~eva~~Nl~R--~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~ 514 (1372)
+|+|+.|=.-.-+++ .+.--+.+...|++...|+++.+|..|+.+++|.+.-- . + .
T Consensus 151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~--------------q------a 208 (885)
T KOG2023|consen 151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--T--------------Q------A 208 (885)
T ss_pred HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--c--------------H------H
Confidence 778887754444444 24556788999999999999999999999999987610 0 0 0
Q ss_pred hhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 000650 515 DLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIM 592 (1372)
Q Consensus 515 ~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~ 592 (1372)
....+. .|+.-+-.+ .+..+.+||+++=..+-.+++.+-+.+...=+.|.+-.-...++.++++.-.|.+-.--++
T Consensus 209 l~~~iD-~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYVHID-KFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHH-HHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 111111 122222233 4677889999999999999999999998888888765544444445554444444333333
No 22
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.21 E-value=75 Score=37.77 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHh
Q 000650 452 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 531 (1372)
Q Consensus 452 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 531 (1372)
-..+|.++.. ...|++..+|.+|++++...+.... ..|...+|.-++..+..+.
T Consensus 122 ~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP----------------------~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 122 SLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNP----------------------KSQEQVIELGALSKLLKIL 175 (342)
T ss_pred hccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCH----------------------HHHHHHHHcccHHHHHHHH
Confidence 3678998887 4578899999999999877654211 2233455544566666666
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcc-----cCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhcc
Q 000650 532 FSTQSTDVRAGTLKILLHVLERCGEKL-----HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDG 595 (1372)
Q Consensus 532 ~~~~~~dIr~~iL~~L~~iL~~~g~~L-----~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~Df 595 (1372)
..+...++|..+|-.+..+|.++-.-. -.||..+..++..-.. +..+.+.++.-+..+....
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~--~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT--SVKLKRKALFLLSLLLQED 242 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhh
Confidence 778888999999999999998764332 2799999888876432 3456777777666665543
No 23
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=62.01 E-value=1.1e+02 Score=34.10 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=67.2
Q ss_pred cccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHH
Q 000650 451 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 530 (1372)
Q Consensus 451 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 530 (1372)
+.+..=+.+...++..+.+++..+|..|..+|..++...- + . . +. +...+..
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~-------~---~---------~~----~~~~l~~- 138 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----Y-------S---P---------KI----LLEILSQ- 138 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H---------------------HH----HHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----c-------H---H---------HH----HHHHHHH-
Confidence 3555567788899999999999999999999988865210 0 0 0 01 0111111
Q ss_pred hccCCcHHHHHHHHHHHHHHHHhcC---CcccCC--hHHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 000650 531 YFSTQSTDVRAGTLKILLHVLERCG---EKLHYS--WPSILELLRSVADASEKDLITLGFQSLRFI 591 (1372)
Q Consensus 531 ~~~~~~~dIr~~iL~~L~~iL~~~g---~~L~sg--W~~If~IL~~v~~~~~~~lv~~aF~~LqlI 591 (1372)
...+.+..+|...++++..+++.++ ..+..+ .+.+...|...-.+.+.++=..|.+++..+
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 2467788999999999999999999 666544 366777776665555555444444444443
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=60.92 E-value=3.5e+02 Score=36.34 Aligned_cols=220 Identities=13% Similarity=0.103 Sum_probs=128.1
Q ss_pred hHHHHhHHhHhhhccCCCHHHHHHHHHHHHHhhHHhhcCCCCCCCCCC----CCCCCC---ceehHHHHHH-HHHHhccc
Q 000650 380 NVLSSLNSQLFESSALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTS----SQKIGS---ISFSVERMIS-ILVNNLHR 451 (1372)
Q Consensus 380 ~il~~~~~~LFesS~~l~~~al~~fi~ALc~lS~e~l~~~~~~~~~~~----~~~~~~---~~F~L~kL~e-va~~Nl~R 451 (1372)
.++.++..++=+.|.. ....--.++..|.......+...-.+.-|+- +.+... +.-.|.++.. ++..+-.+
T Consensus 435 ~iVkai~~qlr~ks~k-t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 435 LIVKAIQKQLREKSVK-TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHhhcccc-chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 4777776666555544 4444445666677666554433222111110 000000 1122233332 23344556
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHh
Q 000650 452 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 531 (1372)
Q Consensus 452 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 531 (1372)
.+..-..++.-......+|-..+.--|.-+..++++ ++.+-+ .+ ..++ ....+..++-..+..+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvk-virpl~------~~------~~~d--~~~~v~~m~~~tl~rL~ 578 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVK-VIRPLQ------PP------SSFD--ASPYVKTMYDCTLQRLK 578 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHH-HhcccC------CC------ccCC--CChhHHHHHHHHHHHHh
Confidence 666667777777777777777777777777777765 332110 10 0000 00111112222334455
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHH
Q 000650 532 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 532 ~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL 611 (1372)
....+-|||+..+.|+.+++-.+|+.++..-+.++.|+----+ ++..--.|+..+.+|...-+..--...+...+.-+
T Consensus 579 a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 579 ATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 6677889999999999999999999999999999988854332 34445578999999987655422134577888888
Q ss_pred HHhhhc
Q 000650 612 GAYSSQ 617 (1372)
Q Consensus 612 ~~F~~Q 617 (1372)
..|++-
T Consensus 657 ~~flrK 662 (1233)
T KOG1824|consen 657 ASFLRK 662 (1233)
T ss_pred HHHHHH
Confidence 899874
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.70 E-value=6e+02 Score=34.88 Aligned_cols=383 Identities=16% Similarity=0.108 Sum_probs=195.1
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhcc
Q 000650 454 PLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFS 533 (1372)
Q Consensus 454 ~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~ 533 (1372)
..-+.|.++.+...++|++.||--|..++-|+...+- ++ .-+..+..+.-.+..++..
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~----------------p~------iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ----------------PE------IQKKHHERLPPALIALLDS 442 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc----------------HH------HHHHHHHhccHHHHHHhcc
Confidence 3456777888888899999999999999999866431 11 1112222232223344567
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCcccC-ChHHHHH-HHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHH
Q 000650 534 TQSTDVRAGTLKILLHVLERCGEKLHY-SWPSILE-LLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 534 ~~~~dIr~~iL~~L~~iL~~~g~~L~s-gW~~If~-IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL 611 (1372)
..+..|+--.-.++-+..+.+...+-. =-+.+++ .+......+.+.+...+-.++--|.+.- ..-=...|..++..|
T Consensus 443 ~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 443 TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLL 521 (1075)
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHH
Confidence 778788887777777777776654432 2333444 3333322222233334444444444311 100013588888889
Q ss_pred HHhhhcCCCc-c--chHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcch
Q 000650 612 GAYSSQKTEL-N--ISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVD 688 (1372)
Q Consensus 612 ~~F~~Q~~dl-N--ISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 688 (1372)
.+|..+..+- + ...+++..+-.++--+.+. .. ..
T Consensus 522 ~~~L~n~~~~d~r~LrgktmEcisli~~AVGke------------------------------~F-------------~~ 558 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRELRGKTMECLSLIARAVGKE------------------------------KF-------------LP 558 (1075)
T ss_pred HHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh------------------------------hh-------------hH
Confidence 9998876532 1 2222222222222111110 00 00
Q ss_pred hhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCccccccccc-
Q 000650 689 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKEL- 767 (1372)
Q Consensus 689 ~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l- 767 (1372)
...=-+.++..+..=+.|.|-..|..-++..-|+-..+|..|.+ .+..|+-|++..........-.++.+..+.
T Consensus 559 ~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p-----~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~ 633 (1075)
T KOG2171|consen 559 LAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAP-----FLPVVMPPLLKTARLDPDVALSDEEDEEEEQ 633 (1075)
T ss_pred hHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHh-----HHHHHhHHHHHhhccCCcccCcCchhhhhcc
Confidence 11112223333322256677778999999988999999999988 678888888887763211110011111110
Q ss_pred -------ccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHH
Q 000650 768 -------GTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEV 840 (1372)
Q Consensus 768 -------~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~el 840 (1372)
...||+ .++.|+-+- -.=.+|...+|..++......|..-. .-|..+.=...++ .-...|
T Consensus 634 ~~~~~e~~~~~~~-e~~~I~Tsv----l~eK~~A~~~Lv~~a~~lk~~F~pYv------e~v~~l~v~~l~f--~fhdgV 700 (1075)
T KOG2171|consen 634 DLDGWEVVELGDK-ENIGIRTSV----LDEKETACEALGEYAKELKEAFAPYV------EQVVELMVPLLKF--YFHDGV 700 (1075)
T ss_pred ccccchhhccCCc-eeeeeeehh----HHHHHHHHHHHHHHHHhhhhhhhhHH------HHHHHHHHHHHHh--hhhhHH
Confidence 011222 244444331 11126777777777666554443211 1244411111111 123557
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCChhHHHHHHHHHHHh-hcC-CCCCCCCCCccchHHHHHHHHHHHHHH-hhcCCHHHHH
Q 000650 841 SLAAINCLQTTVLSHST-KGNLPVAYLNSVLDVYEYA-LQK-SPNYSDNAAGKVKQEILHGLGELYVQA-QKMFDDRMYG 916 (1372)
Q Consensus 841 s~a~~~sL~~lL~~~~~-~~~~~~~~~~~~~~~w~~~-~~~-~~~~~~~~~~~~~qe~l~~f~~ly~~~-~~~~~~~~~~ 916 (1372)
-.++.+++-+++..... .+.. +......|...... ... ..++ ......+.+.+|....+.. ...++.+.++
T Consensus 701 R~aa~~~~p~ll~~~~~A~~~~-p~~l~~l~~~~~~~l~~~l~~E~----e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~ 775 (1075)
T KOG2171|consen 701 RKAAAESMPQLLTCALKACQGG-PEYLKQLWEAIRPALIKALEEEP----ETEVLSEILESFAECIEVMGDNCLNEDGLE 775 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHhcCcccCCcHHHH
Confidence 77888887777755432 1111 23344333322211 111 1122 1245678888999988853 3566777777
Q ss_pred HHHHHHHHH
Q 000650 917 QLLAIIDLA 925 (1372)
Q Consensus 917 ~~l~il~~~ 925 (1372)
.++..+...
T Consensus 776 ~~~~~~~~~ 784 (1075)
T KOG2171|consen 776 ALLGGLLAQ 784 (1075)
T ss_pred HHHHHHHHH
Confidence 766655544
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=57.60 E-value=94 Score=33.45 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHH
Q 000650 451 RVEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVL 530 (1372)
Q Consensus 451 R~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L 530 (1372)
|...+=+...+++.....++++.+|..|+-.|.+|+.+-+-+ - +. ..|-..+ .+
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-------~------------k~--~l~~~~l-----~~ 71 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-------V------------KG--QLFSRIL-----KL 71 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-------e------------hh--hhhHHHH-----HH
Confidence 445555677888889999999999999999999998732110 0 00 1111111 11
Q ss_pred hccCCcHHHHHHHHHHHHHHHHh-cCCcccCChHHHHHHHHH
Q 000650 531 YFSTQSTDVRAGTLKILLHVLER-CGEKLHYSWPSILELLRS 571 (1372)
Q Consensus 531 ~~~~~~~dIr~~iL~~L~~iL~~-~g~~L~sgW~~If~IL~~ 571 (1372)
-...+.+||.....++.++... .++.+ +..+-++|..
T Consensus 72 -l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~ 109 (178)
T PF12717_consen 72 -LVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISS 109 (178)
T ss_pred -HcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHH
Confidence 2567889999999999999988 44444 3344444443
No 27
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.44 E-value=73 Score=40.60 Aligned_cols=162 Identities=15% Similarity=0.208 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhc
Q 000650 453 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 532 (1372)
Q Consensus 453 ~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~ 532 (1372)
-.-|+-+-..|.++..+++.+.-+-|..+|..+....- ++- | .+...++++ .++-.|..+ .
T Consensus 123 ~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~l-----------d---s~~~~rpl~-~mipkfl~f-~ 183 (885)
T KOG2023|consen 123 LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFL-----------D---SDVLTRPLN-IMIPKFLQF-F 183 (885)
T ss_pred cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHH-----------h---hhcccCchH-HhHHHHHHH-H
Confidence 46699999999999999887778888899887754211 111 0 012245565 333333344 4
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHH
Q 000650 533 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 612 (1372)
Q Consensus 533 ~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~ 612 (1372)
.++++.||...+.|+.+++-...+.+--.=+..++.|-.-+.+.++.+=+.-...|-++.+-..+.+-+ .+...|+-.-
T Consensus 184 ~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML 262 (885)
T KOG2023|consen 184 KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYML 262 (885)
T ss_pred hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHH
Confidence 567999999999999999888777776666677777766665555444445555565555433332221 2333333222
Q ss_pred HhhhcCCCccchHhHHHHHHHhH
Q 000650 613 AYSSQKTELNISLTAVGLLWTTT 635 (1372)
Q Consensus 613 ~F~~Q~~dlNISLtAi~llW~is 635 (1372)
...|+.|.|++|.|..+.-.++
T Consensus 263 -~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 263 -QRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred -HHccCcchhHHHHHHHHHHHHh
Confidence 3457789999999998754444
No 28
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=54.69 E-value=2.8e+02 Score=31.57 Aligned_cols=67 Identities=27% Similarity=0.340 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHhhccCC-----CHHHHHHHH--HHHHHHHHhccCCC--CHHHHHHHHHHhHH--HHHHhhhhhh
Q 000650 688 DRDKLLFAVFSLLKKLGADE-----RPEVRNSAI--RTLFQTLGSHGQKL--SESMWEDCLWNYVF--PMLDCASHMA 754 (1372)
Q Consensus 688 ~~~~LW~~LL~~L~~L~~D~-----R~EVRn~AI--qTLfril~s~g~~L--s~~~W~~~~~~VLF--PLl~~l~~~~ 754 (1372)
.|..||..|+..+.=+++.. .+.|-.-+. -.+|..+-++|+.| +|+..+..|.+++- +.|+++....
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~ 135 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMY 135 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHH
Confidence 48999999988777665432 234444333 34577777999977 78899999999886 7788776443
No 29
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=52.60 E-value=1.9e+02 Score=30.39 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhc
Q 000650 702 KLGADERPEVRNSAIRTLFQTLGSHG--QKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLI 779 (1372)
Q Consensus 702 ~L~~D~R~EVRn~AIqTLfril~s~g--~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~ 779 (1372)
+.-...+.-=|+.|++.|-+++.... ..++...|+.+| +.||..++.-.+...... ...
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~if-eaL~~~i~~Ek~~y~~~~-------~~~----------- 71 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIF-EALFRCIEKEKEAYSRKK-------SSS----------- 71 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHH-HHHHHHHHHHHHHHhcCC-------Ccc-----------
Confidence 33345556669999999999998665 889999998877 456666655443221000 000
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHHHHh
Q 000650 780 HHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKE----VSLAAINCLQTTVLS 854 (1372)
Q Consensus 780 h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~e----ls~a~~~sL~~lL~~ 854 (1372)
.+..+....=.+.+.-++..++......+.. +....|++++.+.+.....+ ++.--.++|+.+|..
T Consensus 72 -~s~~~~~~~RL~~~a~~lR~~ve~~~~~~k~--------kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 72 -ASTATTAESRLSSCASALRLFVEKSNSRLKR--------KTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhccc--------chHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 0000000011234444444444444443332 24567888888888766644 455556677666654
No 30
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.06 E-value=62 Score=44.33 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHh---cCCCchhHHHHHHHHHhhhccChHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 000650 53 CEVFLSMLVKVT---FLDLPLWHRILVLEILRGFCVEARTLRLLFQNFDMNPKNTNVVEGMVKALARV 117 (1372)
Q Consensus 53 ~Ei~LslLi~~l---d~d~~~W~RvL~LEv~r~l~~d~~llr~i~~~YD~~~~~k~I~~~l~~~l~~~ 117 (1372)
.|.+.+.+.... +...|.=||-++||.+=.+|..|.++-.+|-+||.+....|||.++++.|.+.
T Consensus 390 le~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~Ltkn 457 (1386)
T KOG0928|consen 390 LEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKN 457 (1386)
T ss_pred HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHc
Confidence 344555555443 22235689999999999999999999999999999999999999999998763
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=4e+02 Score=36.61 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHH
Q 000650 467 ADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKI 546 (1372)
Q Consensus 467 ~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~ 546 (1372)
-++.+..++.+|-+.|..++.. -.-+ +. -......+++.++.++... ..-++.--+.|
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~~---------~~-------~~q~i~~I~n~L~ds~qs~-----~~~~~~~rl~~ 720 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSGE---------GL-------VEQRIDDIFNSLLDSFQSS-----SSPAQASRLKC 720 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-Cchh---------hH-------HHHHHHHHHHHHHHHHhcc-----chHHHHHHHHH
Confidence 3445677888888887776542 0000 00 0112334444555554433 34677888999
Q ss_pred HHHHHHhcCCcccCChHHHH------HHHHHhhhcCchhHHHHHHHHHHHHH--hccCCCC---chhhHHHHHHHHHH
Q 000650 547 LLHVLERCGEKLHYSWPSIL------ELLRSVADASEKDLITLGFQSLRFIM--NDGLSSI---PTDCIHECVDVTGA 613 (1372)
Q Consensus 547 L~~iL~~~g~~L~sgW~~If------~IL~~v~~~~~~~lv~~aF~~LqlI~--~DfL~~L---p~~~~~~lI~tL~~ 613 (1372)
|+.|++.++ .|...| ++|-+. .+.+...=+.||+||..|+ .-++.-. +.+.+...+..++.
T Consensus 721 L~~L~~~~~-----~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 721 LKRLLKLLS-----AEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHhcc-----HHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence 999999887 444333 333333 3345567789999999999 4333322 13344444444443
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=48.13 E-value=57 Score=31.49 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHH
Q 000650 459 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 538 (1372)
Q Consensus 459 l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 538 (1372)
+..++++...+++..+|..|+.+|..+.... + + .. ....+.-++..+..++. +.+.+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~--------------~-~~----~~~~~~~~i~~l~~~l~-~~~~~ 64 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN---N--------------D-NI----QAVVEAGGLPALVQLLK-SEDEE 64 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---H--------------H-HH----HHHHHCCChHHHHHHHh-CCCHH
Confidence 4567888888889999999999988875421 0 0 00 00111112223333333 35789
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000650 539 VRAGTLKILLHVLERCG 555 (1372)
Q Consensus 539 Ir~~iL~~L~~iL~~~g 555 (1372)
+++..+.+|.++.+...
T Consensus 65 v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 65 VVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHHHHHHHHHHccCcH
Confidence 99999999999977543
No 33
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=47.92 E-value=1.1e+02 Score=35.70 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-CCCCHHHH
Q 000650 707 ERPEVRNSAIRTLFQTLGSHG-QKLSESMW 735 (1372)
Q Consensus 707 ~R~EVRn~AIqTLfril~s~g-~~Ls~~~W 735 (1372)
...+||..|++.+|+++..|| ..++...+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 389999999999999999999 45555444
No 34
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=45.97 E-value=9.3e+02 Score=32.67 Aligned_cols=280 Identities=14% Similarity=0.110 Sum_probs=146.2
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCccc-CChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHH
Q 000650 533 STQSTDVRAGTLKILLHVLERCGEKLH-YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 533 ~~~~~dIr~~iL~~L~~iL~~~g~~L~-sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL 611 (1372)
.+.+.|.|.+...-|..=||.-.-+|. .+-+-+..+|-..-.+++.+.-..|..|+-.+++ -++.+.+...|+.|
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvs----Kvke~~le~~ve~L 90 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVS----KVKEDQLETIVENL 90 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHh----hchHHHHHHHHHHH
Confidence 456778888888888888887655554 4556666555544445566788899999998884 57888999999998
Q ss_pred HHhhhcCCCccchHhHHHHHHHhHHHHHhccCC-CChhhHhhhhcccCCCcccc--Cc------hhhhhhhccccccccC
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVH-GISEEKEAANQDLCSVPKQM--DG------EKREEKTLSNLDDQNH 682 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~-~~~~~k~~~~~~~~s~~~~~--~~------~~~e~~~~~~~~~~~~ 682 (1372)
..=.-...+.-.-++|+++.-.++.--...... .....+.-...-...+..+- .+ ...++..+++ +.
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~----g~ 166 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF----GT 166 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh----cc
Confidence 776443334444556777654443221100000 00000000000000000000 00 0011111111 00
Q ss_pred CCCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccc
Q 000650 683 SIGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEW 762 (1372)
Q Consensus 683 ~~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~ 762 (1372)
. .+ ..=..++.++.-.-.-+|..||+.||..|=... .++. . ..+.+++=-+++.+...
T Consensus 167 -l-l~---~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la-~~~~---~----~ly~~li~~Ll~~L~~~--------- 224 (1233)
T KOG1824|consen 167 -L-LP---NFHLSILKCLLPQLQSPRLAVRKKAITALGHLA-SSCN---R----DLYVELIEHLLKGLSNR--------- 224 (1233)
T ss_pred -c-Cc---chHHHHHHHHhhcccChHHHHHHHHHHHHHHHH-HhcC---H----HHHHHHHHHHHhccCCC---------
Confidence 0 01 122345666666667899999999997764433 3333 2 23444444455544211
Q ss_pred cccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHH
Q 000650 763 QGKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSL 842 (1372)
Q Consensus 763 ~~~~l~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~ 842 (1372)
++-.-..|.+.+++.+++--...|. .+-+| .-..+.+|-+ .+..+.+|+-+
T Consensus 225 -----------------------~q~~~~rt~Iq~l~~i~r~ag~r~~---~h~~~--ivp~v~~y~~-~~e~~dDELrE 275 (1233)
T KOG1824|consen 225 -----------------------TQMSATRTYIQCLAAICRQAGHRFG---SHLDK--IVPLVADYCN-KIEEDDDELRE 275 (1233)
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHhcchhh---cccch--hhHHHHHHhc-ccccCcHHHHH
Confidence 0011124667777777665544443 22121 1222444433 33677799999
Q ss_pred HHHHHHHHHHHhhc-CCCCCChhHHHHHHH
Q 000650 843 AAINCLQTTVLSHS-TKGNLPVAYLNSVLD 871 (1372)
Q Consensus 843 a~~~sL~~lL~~~~-~~~~~~~~~~~~~~~ 871 (1372)
..+..|.-+|..+. +....-+++.+.+.+
T Consensus 276 ~~lQale~fl~rcp~ei~p~~pei~~l~l~ 305 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEILPHVPEIINLCLS 305 (1233)
T ss_pred HHHHHHHHHHHhChhhhcccchHHHHHHHH
Confidence 99999999887653 122222444444444
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.26 E-value=1.1e+03 Score=32.73 Aligned_cols=332 Identities=14% Similarity=0.111 Sum_probs=176.4
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHh
Q 000650 452 VEPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 531 (1372)
Q Consensus 452 ~~~iW~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~ 531 (1372)
...+-+.+...+. +.+.|..++..++.+|..|+.+ +.+..+... .-.+.+...+ . +
T Consensus 91 Fs~~~~~l~~~~~--~~stn~svlr~~iscL~~lLra----Qd~~aW~~~------------~t~~~~~~il-----~-~ 146 (1176)
T KOG1248|consen 91 FSDTLNILAPFLT--AESTNGSVLRLAISCLEDLLRA----QDASAWSYS------------STKTELFGIL-----A-F 146 (1176)
T ss_pred HHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHH----cchhhhccc------------cHHHHHHHHH-----H-H
Confidence 4555566666555 6678999999999999988763 111111100 0011222111 1 1
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHH
Q 000650 532 FSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 532 ~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL 611 (1372)
.-...+.||...+++++.+|.+.---.. ..|+..+..|+.||++|-.... +.+
T Consensus 147 ~~h~~pkvRk~a~~~i~~VL~~p~~~~~---------------~~HpA~~~vak~cl~~~e~~~~---~a~--------- 199 (1176)
T KOG1248|consen 147 AAHKKPKVRKAAQRGIAAVLKGPPFAPD---------------AEHPASLSVAKFCLALIESKLG---SAE--------- 199 (1176)
T ss_pred HhcCchHHHHHHHHHHHHHHcCCCCCcc---------------ccchHHHHHHHHHHHHHHhhhc---hHH---------
Confidence 3345679999999999999986432211 2377899999999999876443 111
Q ss_pred HHhhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhh
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 691 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 691 (1372)
.-+-+..|-.+-|-+... . ..
T Consensus 200 ------------~t~v~~~L~Ll~~~~~~~-p----------------------------------------------~~ 220 (1176)
T KOG1248|consen 200 ------------NTTVLRSLMLLRDVLSTF-P----------------------------------------------RP 220 (1176)
T ss_pred ------------HHHHHHHHHHHHHhhccC-C----------------------------------------------HH
Confidence 111122222222322221 0 01
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCC
Q 000650 692 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 771 (1372)
Q Consensus 692 LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~ 771 (1372)
+.-.+=..+.+.++-.-..|+-.+.|+|-+.+..|-..++.+.-..+ |..+... .++..
T Consensus 221 li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~l--------L~al~~l-~ps~~------------ 279 (1176)
T KOG1248|consen 221 LIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARL--------LTALMTL-SPSEN------------ 279 (1176)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHH--------HHHHHHh-CCCcc------------
Confidence 11112233344456677899999999999999988877776444332 2222211 11100
Q ss_pred CccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 000650 772 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 851 (1372)
Q Consensus 772 ~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~l 851 (1372)
+..-...|.. ++.+.-..|...-. +.-...-.+++..|.++..++..++..++..|+.++
T Consensus 280 -----------D~~~t~~W~~----v~~~~~~~la~~q~-----~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~i 339 (1176)
T KOG1248|consen 280 -----------DDLLTVAWLK----VLNEAHDILATLQE-----EKALQALPRLFSLFFTILESLIEELVQAASQSLKEI 339 (1176)
T ss_pred -----------chHHHHHHHH----HHHHHHHHHHHhCH-----HHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111244543 22222222222221 111123345667777788899999999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcccC
Q 000650 852 VLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMI 931 (1372)
Q Consensus 852 L~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~qe~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~p~~ 931 (1372)
+..... +.+..=...+.... .|+. ..+.-++++.+-.+|..-....+. .+...|..|... +
T Consensus 340 l~~sv~---~~~~~c~~~~~~~l-------~~kf---~~~~~~ilqi~s~~fek~G~~s~~-~l~~~L~~l~~l-r---- 400 (1176)
T KOG1248|consen 340 LKESVT---VIDALCSKQLHSLL-------DYKF---HAVWRFILQILSALFEKCGELSGP-ELTKTLEGLCDL-R---- 400 (1176)
T ss_pred hcccCc---ccHHHHHHHHHHHH-------cchH---HHHHHHHHHHHHHHHHHhhhhcCH-HHHHHHHHHHHh-h----
Confidence 865443 11211111121111 1111 134556777777788754444443 344444444331 1
Q ss_pred CCCCCccccCCCCHHHHHHHHhcccc
Q 000650 932 THDNYEIEFGHVPPVLRTILEILPLL 957 (1372)
Q Consensus 932 ~~~~~~~d~~~~s~lQ~~vl~~l~~i 957 (1372)
+..|..+...++..|-.++..+
T Consensus 401 ----~~~d~~~~~~ld~~IGSAV~Am 422 (1176)
T KOG1248|consen 401 ----ASPDFFHKLQLDQCIGSAVRAM 422 (1176)
T ss_pred ----cCCCCccHHHHHHHHHHHHHhh
Confidence 3334445558888888877655
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=40.32 E-value=1.5e+02 Score=28.69 Aligned_cols=29 Identities=38% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000650 694 FAVFSLLKKLGADERPEVRNSAIRTLFQTL 723 (1372)
Q Consensus 694 ~~LL~~L~~L~~D~R~EVRn~AIqTLfril 723 (1372)
-.+|..|.+++.|+.+.||++| +.|=|.+
T Consensus 67 ~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 67 NEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3366888999999999999999 5555544
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.36 E-value=1.1e+03 Score=31.48 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 000650 458 QVVGHFLELADNSNQHLRNIALDALDQSICAVL 490 (1372)
Q Consensus 458 ~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L 490 (1372)
-+....-++++|+++.+|.+|+-++.+++.+.-
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 455556678889999999999999999988764
No 38
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.88 E-value=6.8e+02 Score=29.21 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCc
Q 000650 457 DQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQS 536 (1372)
Q Consensus 457 ~~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~ 536 (1372)
..+.+.+.-...|++..+|+.|+.+|--... +.++ . ....+. .++ ..+ ...+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~~-----------------~---a~~~l~-l~~----~~~-~~~~ 77 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL--LDKE-----------------L---AKEHLP-LFL----QAL-QKDD 77 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hChH-----------------H---HHHHHH-HHH----HHH-HhCC
Confidence 4444445577788999999999999876544 2110 0 011221 122 122 2237
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCChH---------HHHHHHHHhhhcCchhHHHHHHHHHH-HHHhccCC
Q 000650 537 TDVRAGTLKILLHVLERCGEKLHYSWP---------SILELLRSVADASEKDLITLGFQSLR-FIMNDGLS 597 (1372)
Q Consensus 537 ~dIr~~iL~~L~~iL~~~g~~L~sgW~---------~If~IL~~v~~~~~~~lv~~aF~~Lq-lI~~DfL~ 597 (1372)
.+|+...++++-.++-.||...-..+. .+.+++.......++++-..|-+.+- |+..+.+.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~ 148 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS 148 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999977755444 46666655544444444444444443 44444443
No 39
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=38.21 E-value=81 Score=29.86 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 000650 792 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQT 850 (1372)
Q Consensus 792 ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~ 850 (1372)
+.+-+++..+..+...+-+.|. ..|..+++.+......++.++...|+.+++.
T Consensus 33 ~vre~il~ci~qil~~~~~~i~------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 33 DVRELILECILQILQSRGENIK------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 6888889999999888887665 3699999999999998899999999998875
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=38.02 E-value=4.1e+02 Score=28.51 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHHHHHHHHHH
Q 000650 471 NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAGTLKILLHV 550 (1372)
Q Consensus 471 n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~i 550 (1372)
|+.+|..|+.++..|+.++ .++ .-.....+. . .-.+.+..||+..+.+|.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~------~~~----------------ve~~~~~l~-----~-~L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY------PNL----------------VEPYLPNLY-----K-CLRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC------cHH----------------HHhHHHHHH-----H-HHCCCCHHHHHHHHHHHHHH
Confidence 5789999999999998843 210 000111111 1 12466889999999999999
Q ss_pred HHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhhcCCCccchHhHHHH
Q 000650 551 LERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYSSQKTELNISLTAVGL 630 (1372)
Q Consensus 551 L~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~~Q~~dlNISLtAi~l 630 (1372)
+.+. .++-.=..++.++....+ .++.+...|=.++.-+...--+.. -...+++++..|.....+..+.-....-
T Consensus 53 i~~d--~ik~k~~l~~~~l~~l~D-~~~~Ir~~A~~~~~e~~~~~~~~~---i~~~~~e~i~~l~~~~~~~~~~~~~~~~ 126 (178)
T PF12717_consen 53 ILED--MIKVKGQLFSRILKLLVD-ENPEIRSLARSFFSELLKKRNPNI---IYNNFPELISSLNNCYEHPVYGPLSREK 126 (178)
T ss_pred HHcC--ceeehhhhhHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHhCccccccccccCHHH
Confidence 9863 333221223566666644 455666666666665554321222 2444555555555543222111112345
Q ss_pred HHHhHHHHHhc
Q 000650 631 LWTTTDFIAKG 641 (1372)
Q Consensus 631 lW~isD~L~~~ 641 (1372)
++.+-+|+-+.
T Consensus 127 ~~~I~~fll~~ 137 (178)
T PF12717_consen 127 RKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 41
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=37.29 E-value=9.3e+02 Score=30.18 Aligned_cols=235 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHhhHHhhcCCCCCCCCCCCCCCCCceehHHHHHHHHHHhcccccchHHHHHHHHHHHh--cCC-
Q 000650 394 ALMHISAVKSLLSALHQLSHQCMIGTSSSFGPTSSQKIGSISFSVERMISILVNNLHRVEPLWDQVVGHFLELA--DNS- 470 (1372)
Q Consensus 394 ~~l~~~al~~fi~ALc~lS~e~l~~~~~~~~~~~~~~~~~~~F~L~kL~eva~~Nl~R~~~iW~~l~~hli~v~--~~~- 470 (1372)
..+|++++..+|..||.. .. .-.+.+-.==+..|+-+ ...+......+..+. .++
T Consensus 208 ~~iP~~sl~~~i~vLCsi-~~--------------------~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 208 GDIPSESLSPCIEVLCSI-VN--------------------SVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred CcCChHHHHHHHHHHhhH-hc--------------------ccccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCcc
Q ss_pred ---CHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhh--hhhhHHHHHhccHHHHhccCCcHHHHHHHHH
Q 000650 471 ---NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHG--DLRSIECAVISPLRVLYFSTQSTDVRAGTLK 545 (1372)
Q Consensus 471 ---n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~--~~~~lq~~ll~pl~~L~~~~~~~dIr~~iL~ 545 (1372)
+..+--=|+..|+.++. ......-+...-.. .+.+|...+ ...+.-|--.|+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~-------------~~~~~~~~~l~~~~~~vl~sl~~al---------~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLW-------------GSGEQGYPSLPFSPSSVLPSLLNAL---------KSNSPRVDYEILL 323 (464)
T ss_pred ccccHHHHhhHHHHHHHHHh-------------ccccCCcceecccHHHHHHHHHHHH---------hCCCCeehHHHHH
Q ss_pred HHHHHH-HhcCCcc-cCChHHHHHHHHHhhhcCch-----------hHHHHHHHHHHHHHhccCCCCchh-hHHHHHHHH
Q 000650 546 ILLHVL-ERCGEKL-HYSWPSILELLRSVADASEK-----------DLITLGFQSLRFIMNDGLSSIPTD-CIHECVDVT 611 (1372)
Q Consensus 546 ~L~~iL-~~~g~~L-~sgW~~If~IL~~v~~~~~~-----------~lv~~aF~~LqlI~~DfL~~Lp~~-~~~~lI~tL 611 (1372)
.+..++ .+++..+ ...|..+++|+..+.+.-.. +-+...+..+--.+..-.+..... .-..+++.+
T Consensus 324 ~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~ 403 (464)
T PF11864_consen 324 LINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFF 403 (464)
T ss_pred HHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHH
Q ss_pred HHhhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhh
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 691 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 691 (1372)
.++...- +-+++.++- |-..+ ........|..
T Consensus 404 ~~~~~~l-----p~s~~~~vl----~~~~~---------------------------------------~~~Ps~~~W~~ 435 (464)
T PF11864_consen 404 ERVHSYL-----PDSSALLVL----FYEER---------------------------------------SCSPSNPDWLD 435 (464)
T ss_pred HHHhccC-----CHHHHHHHH----HHHhc---------------------------------------ccCCCChHHHH
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 000650 692 LLFAVFSLLKKLGADERPEVRNSAIRTLFQT 722 (1372)
Q Consensus 692 LW~~LL~~L~~L~~D~R~EVRn~AIqTLfri 722 (1372)
--..++.+.- ..+.|++||-.|++++-+|
T Consensus 436 n~~~ll~~F~--~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 436 NLQKLLDRFY--NRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHh--CCCCCchHHHHHHHHHhhC
No 42
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.97 E-value=3.6e+02 Score=28.53 Aligned_cols=86 Identities=20% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhHHhhcCCCCCCCCC-CCCCCCCceehHHHHHHHHHHhcc---------c-ccchHHHHHHHHHHHhcC
Q 000650 401 VKSLLSALHQLSHQCMIGTSSSFGPT-SSQKIGSISFSVERMISILVNNLH---------R-VEPLWDQVVGHFLELADN 469 (1372)
Q Consensus 401 l~~fi~ALc~lS~e~l~~~~~~~~~~-~~~~~~~~~F~L~kL~eva~~Nl~---------R-~~~iW~~l~~hli~v~~~ 469 (1372)
...+++.||.++........ .+. ......++.|+|+-+..+-..+-+ . ...+.+.+..++...+.+
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~---~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~ 84 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGN---SPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS 84 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCC---CcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999854321110 000 011234457777765554332211 1 356789999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 000650 470 SNQHLRNIALDALDQSICAV 489 (1372)
Q Consensus 470 ~n~~lr~~Avd~L~~Li~~~ 489 (1372)
++..+-..+...+..++.++
T Consensus 85 ~~~~i~~~slri~~~l~~~~ 104 (168)
T PF12783_consen 85 SDFPIFSRSLRIFLTLLSRF 104 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 88888889999988887754
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=3.7e+02 Score=33.97 Aligned_cols=212 Identities=15% Similarity=0.204 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHH
Q 000650 461 GHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVR 540 (1372)
Q Consensus 461 ~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr 540 (1372)
..|+.+..+++..++++|+-+|..++..- .. -| ...+.+-.+.|+..+...+...-++
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagds---~~---------------~R----d~vl~~g~l~pLl~~l~~~~~~~~l 212 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGDS---PD---------------CR----DYVLSCGALDPLLRLLNKSDKLSML 212 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccCC---hH---------------HH----HHHHhhcchHHHHHHhccccchHHH
Confidence 44899999999999999999988775421 01 11 1344445566776665444444567
Q ss_pred HHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhh---cCchhHHHHHHHHHHHHHhccCCC----CchhhHHHHHHHHHH
Q 000650 541 AGTLKILLHVLERCGEKLHYSWPSILELLRSVAD---ASEKDLITLGFQSLRFIMNDGLSS----IPTDCIHECVDVTGA 613 (1372)
Q Consensus 541 ~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~---~~~~~lv~~aF~~LqlI~~DfL~~----Lp~~~~~~lI~tL~~ 613 (1372)
+.+.=+|.++..... =.--|..|=.+|..... ..++.+..-|.-.+..+.+.--.. +.......+|++|..
T Consensus 213 Rn~tW~LsNlcrgk~--P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKN--PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 777777777765432 23456665555544432 233344444444444333211110 111234445555554
Q ss_pred hhhcCCCccchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCCCCcchhhhhH
Q 000650 614 YSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDKLL 693 (1372)
Q Consensus 614 F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~LW 693 (1372)
+--+.. .=+|.++|..-.-+|.... .-.+.
T Consensus 291 ~~~~v~--~PaLRaiGNIvtG~d~QTq----------------------------------------------~vi~~-- 320 (514)
T KOG0166|consen 291 SSPKVV--TPALRAIGNIVTGSDEQTQ----------------------------------------------VVINS-- 320 (514)
T ss_pred CCcccc--cHHHhhccceeeccHHHHH----------------------------------------------HHHhc--
Confidence 433221 1122222211000000000 00111
Q ss_pred HHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhh
Q 000650 694 FAVFSLLKKLGA-DERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASH 752 (1372)
Q Consensus 694 ~~LL~~L~~L~~-D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~ 752 (1372)
.+|.+|..+-. .+..-+|+.|.=|+-+|-. |. .+.=+.++..=++|.+-++.+
T Consensus 321 -~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~---~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 321 -GALPVLSNLLSSSPKESIKKEACWTISNITA--GN---QEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred -ChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CC---HHHHHHHHHcccHHHHHHHHh
Confidence 14456666666 4444499999999888876 54 234567888888888887764
No 44
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=34.54 E-value=5.9e+02 Score=29.30 Aligned_cols=145 Identities=22% Similarity=0.254 Sum_probs=80.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHHHHHH
Q 000650 463 FLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTDVRAG 542 (1372)
Q Consensus 463 li~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~dIr~~ 542 (1372)
+..+..+|++.+|.+|..+|..+.... +. . ...+..+-.-...+.....+.+++..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~-----------------en--~-----~~Ik~~i~~Vc~~~~s~~lns~~Q~a 114 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVND-----------------EN--Q-----EQIKMYIPQVCEETVSSPLNSEVQLA 114 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCCh-----------------hh--H-----HHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 345667789999999999988764310 00 0 01111111111223344556788888
Q ss_pred HHHHHHHHH-HhcCCcc-cCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHH--HHHHhhh--
Q 000650 543 TLKILLHVL-ERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVD--VTGAYSS-- 616 (1372)
Q Consensus 543 iL~~L~~iL-~~~g~~L-~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~--tL~~F~~-- 616 (1372)
.|+.|.++- ....+.+ ...=+.+|.+|..- ++ ..=+++|+.+++ |+.=| +...+++. ++..|..
T Consensus 115 gLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G---~~----~~k~~vLk~L~n--LS~np-~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 115 GLRLLTNLTVTNDYHHMLANYIPDLLSLLSSG---SE----KTKVQVLKVLVN--LSENP-DMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred HHHHHHccCCCcchhhhHHhhHHHHHHHHHcC---Ch----HHHHHHHHHHHH--hccCH-HHHHHHHhccchhHHHHHH
Confidence 888887762 2222333 34444555555432 11 233778887774 44322 22333333 3444543
Q ss_pred -cCCCccchHhHHHHHHHhHHHHHhc
Q 000650 617 -QKTELNISLTAVGLLWTTTDFIAKG 641 (1372)
Q Consensus 617 -Q~~dlNISLtAi~llW~isD~L~~~ 641 (1372)
.+.+-++-+.++.+|-++++.+++.
T Consensus 185 ~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 185 NSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 3446677889999999999988865
No 45
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=29.60 E-value=79 Score=30.19 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=34.2
Q ss_pred hhhHH--HHHHHHHHHHHHHHHhhhhhccc-ccchHHHHHHHHHHHHHHH
Q 000650 787 QKQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 833 (1372)
Q Consensus 787 ~k~W~--ET~vlaL~gl~~lf~~~~~~l~~-l~~F~~~W~~LL~~~~~~~ 833 (1372)
...|- |+..-++.|++++|-.|+..... .....---..|.+|++.+.
T Consensus 16 sRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 16 SRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLA 65 (104)
T ss_pred cccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHh
Confidence 35675 89999999999999999987632 2333334567788888664
No 46
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=29.32 E-value=1e+03 Score=28.17 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHH
Q 000650 792 ETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHSTKGNLPVAYLNSVLD 871 (1372)
Q Consensus 792 ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~ 871 (1372)
+|+.-+|.++.++|..++.. +...+...+|++.+.++++.+..+=...+.+.+.=+....+... -..++++.+..
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~----d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~-~~~ei~~~~~~ 132 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP----DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE-DSEEIFEELKP 132 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHH
Confidence 69999999999999887742 33345688899999999988775434445565554444433222 24677777777
Q ss_pred HHHHhhcCCCCCCCCCCccchHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcccCCCCCCccccCC--CCHHHHH
Q 000650 872 VYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQAQKMFDDRMYGQLLAIIDLAVRQTMITHDNYEIEFGH--VPPVLRT 949 (1372)
Q Consensus 872 ~w~~~~~~~~~~~~~~~~~~~qe~l~~f~~ly~~~~~~~~~~~~~~~l~il~~~~~~p~~~~~~~~~d~~~--~s~lQ~~ 949 (1372)
+..+++..... ..+..+.++.++.-+--. ..-+.+.++..+..|.......++..+...+.+.. .+++..+
T Consensus 133 ~L~~~l~d~s~-----~~~~R~~~~~aLai~~fv--~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 133 VLKRILTDSSA-----SPKARAACLEALAICTFV--GGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHhCCcc-----chHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 77666543211 123446666666554321 23456777766666663322112222212222222 3678888
Q ss_pred HHHhccccC
Q 000650 950 ILEILPLLS 958 (1372)
Q Consensus 950 vl~~l~~i~ 958 (1372)
.|++-.++-
T Consensus 206 AL~aW~lLl 214 (309)
T PF05004_consen 206 ALSAWALLL 214 (309)
T ss_pred HHHHHHHHH
Confidence 888755443
No 47
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=27.97 E-value=9.9e+02 Score=29.85 Aligned_cols=117 Identities=25% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCcc
Q 000650 695 AVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKA 774 (1372)
Q Consensus 695 ~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~ 774 (1372)
.+...|..+..++|.+=|++|++-|...+. -+.|+- |+.+|.++|.-+++-+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~--e~sfsv--Weq~f~~iL~~l~EvL~----------------------- 339 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLC--EGSFSV--WEQHFAEILLLLLEVLS----------------------- 339 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHH--ccchhH--HHHHHHHHHHHHHHHHc-----------------------
Q ss_pred chhhcccccchhhhhHHHH-HHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 000650 775 VHMLIHHSRNTAQKQWDET-LVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVL 853 (1372)
Q Consensus 775 ~~~l~h~sr~~~~k~W~ET-~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~ 853 (1372)
+.-+++ ..++|.-+.++..+.=..|. +.-.-+-..+|+ +.+...+++..+|-++.-.++.
T Consensus 340 -------------d~~~~~~k~laLrvL~~ml~~Q~~~l~--DstE~ai~K~Le----aa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 340 -------------DSEDEIIKKLALRVLREMLTNQPARLF--DSTEIAICKVLE----AAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred -------------cchhhHHHHHHHHHHHHHHHhchHhhh--chHHHHHHHHHH----HHhCCchhHHHHHHHHHHHHHH
Q ss_pred hhcC
Q 000650 854 SHST 857 (1372)
Q Consensus 854 ~~~~ 857 (1372)
+..+
T Consensus 401 s~~P 404 (516)
T KOG2956|consen 401 SHLP 404 (516)
T ss_pred hhCc
No 48
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=27.82 E-value=1e+03 Score=27.67 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CC---CCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccc
Q 000650 689 RDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHG-QK---LSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQG 764 (1372)
Q Consensus 689 ~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g-~~---Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~ 764 (1372)
....|-.++-.+-.+.-|..+++|-.+++.|..++..-. .. |..-....+|.+.++|++--+-..
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~----------- 181 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPI----------- 181 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCC-----------
Confidence 446677777778888999999999999999999997332 23 233233445555555555444110
Q ss_pred cccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhh--cccccchHHHHHH-HHHHHHHHHcCCchHHH
Q 000650 765 KELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPF--LANLSNFWTGWES-LLHFVKNSILNGSKEVS 841 (1372)
Q Consensus 765 ~~l~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~--l~~l~~F~~~W~~-LL~~~~~~~~~~~~els 841 (1372)
+...+..+-...+..-+..++..-+.. -.....+.+...+ +|..+..........+.
T Consensus 182 --------------------tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~ 241 (282)
T PF10521_consen 182 --------------------TPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLR 241 (282)
T ss_pred --------------------CCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHH
Confidence 111222233334444444444332211 0111222333322 44444333333457888
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhc
Q 000650 842 LAAINCLQTTVLSHSTKGNLPVAYLNSVLDVYEYALQ 878 (1372)
Q Consensus 842 ~a~~~sL~~lL~~~~~~~~~~~~~~~~~~~~w~~~~~ 878 (1372)
.+.++.+..++..++.. .-...+..+-++..+..
T Consensus 242 ~~ll~~l~~~i~~lGi~---~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 242 TVLLQQLPPIIDELGIS---SVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHhc
Confidence 88888888888776532 23455555555554433
No 49
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=26.37 E-value=3.1e+02 Score=27.16 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhh
Q 000650 536 STDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTGAYS 615 (1372)
Q Consensus 536 ~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~~F~ 615 (1372)
...-|++.+..+..+++-.|..+.+.=+.|...|.++-. .+++-..||+|....+ ..|+.+.+..+++......
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i----~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI----KTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHH
Confidence 446699999999999999999999999999999998776 5568889999988554 4577788888888776655
Q ss_pred hc
Q 000650 616 SQ 617 (1372)
Q Consensus 616 ~Q 617 (1372)
-|
T Consensus 102 ~~ 103 (107)
T smart00802 102 LP 103 (107)
T ss_pred HH
Confidence 43
No 50
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.80 E-value=5.4e+02 Score=30.55 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCcccccccccccCCCccchhhcccccc
Q 000650 706 DERPEVRNSAIRTLFQTLG-SHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRGGKAVHMLIHHSRN 784 (1372)
Q Consensus 706 D~R~EVRn~AIqTLfril~-s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~~~~l~~~~~~~~~~l~h~sr~ 784 (1372)
+.-|+.|..-+=.++.++- ..|+.+.+ .-..++..|+-|.++=+... .
T Consensus 82 ~~~p~~r~~evL~l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d----------~-------------------- 130 (319)
T PF08767_consen 82 NSVPDAREPEVLSLMATIINKLGELIQP-QVPQILEAVFECTLPMINKD----------F-------------------- 130 (319)
T ss_dssp HS-GGGS-HHHHHHHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSST----------S--------------------
T ss_pred cCCccccChhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhh----------h--------------------
Confidence 3566777776666666554 55665554 23456666666666544210 0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhcC
Q 000650 785 TAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTTVLSHST 857 (1372)
Q Consensus 785 ~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a~~~sL~~lL~~~~~ 857 (1372)
.+.-|-++--.+.+..+...+|+.+..++. ..+..+++.+...++....+++..+++.+.+++.....
T Consensus 131 ---~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 ---EEYPEHRVNFFKLLRAINEHCFPALLQLPP--EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp ---SSSHHHHHHHHHHHHHHHHHHTHHHHHS-H--HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhChHHHHHHHHHHHHHHHHhHHHHHcCCH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 112245555566666666777776665542 45778899999999999999999999999999977654
No 51
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.50 E-value=2e+02 Score=27.97 Aligned_cols=73 Identities=12% Similarity=0.236 Sum_probs=51.7
Q ss_pred hHHHHHhccHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHh
Q 000650 518 SIECAVISPLRVLYFSTQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 593 (1372)
Q Consensus 518 ~lq~~ll~pl~~L~~~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~ 593 (1372)
.++ .++.|+... ...++..||....|+|.+|....+..+-.--..||+.|.....+.+ +-|+.|-+.|--.+.
T Consensus 24 ~l~-~Il~pVL~~-~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d-~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLD-EILPPVLKC-FDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD-ENVRSAAELLDRLLK 96 (97)
T ss_pred HHH-HHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhc
Confidence 344 345565544 4677889999999999999988777666677888888877666544 357777676654443
No 52
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=23.78 E-value=4.6e+02 Score=27.54 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhcC--Cccc-CChHHHHHHHHHhhh-cC----------chh------HHHHHHHHHHHHHhccC
Q 000650 537 TDVRAGTLKILLHVLERCG--EKLH-YSWPSILELLRSVAD-AS----------EKD------LITLGFQSLRFIMNDGL 596 (1372)
Q Consensus 537 ~dIr~~iL~~L~~iL~~~g--~~L~-sgW~~If~IL~~v~~-~~----------~~~------lv~~aF~~LqlI~~DfL 596 (1372)
..=|...|+.|.+++.... ..+. .+|..||+.|-.... ++ ... =...+-.+|++++.-..
T Consensus 18 ~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~~lR~~ve~~~ 97 (155)
T PF11640_consen 18 IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCASALRLFVEKSN 97 (155)
T ss_pred cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777888887654 5554 699999977744322 10 011 24567788999998888
Q ss_pred CCCchhhHHHHHHHHHHhhhcCCCccchHhHHHHHHHhHHHHHh
Q 000650 597 SSIPTDCIHECVDVTGAYSSQKTELNISLTAVGLLWTTTDFIAK 640 (1372)
Q Consensus 597 ~~Lp~~~~~~lI~tL~~F~~Q~~dlNISLtAi~llW~isD~L~~ 640 (1372)
+.++...+..+|+.+..-.....+--..--+..+...+.+.|..
T Consensus 98 ~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~ 141 (155)
T PF11640_consen 98 SRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSY 141 (155)
T ss_pred hhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCC
Confidence 88998888888888888777664333333345566555555543
No 53
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=23.48 E-value=2.4e+02 Score=27.83 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=62.2
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHH
Q 000650 533 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVTG 612 (1372)
Q Consensus 533 ~~~~~dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~lI~tL~ 612 (1372)
......-|.+.+.++..+++-.|.++.+.=+.|...|.++-. .+++-..||+|-... +..|+.+.+..+++...
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~f----i~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALE--IPELREEALSCWNCF----IKTLDEEDLGPLLDQIF 98 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHH----HHHCCHHHHHHHHHHHH
Confidence 345668899999999999999999999999999999998866 446888888887744 45677788888887766
Q ss_pred Hhhh
Q 000650 613 AYSS 616 (1372)
Q Consensus 613 ~F~~ 616 (1372)
...-
T Consensus 99 ~~l~ 102 (107)
T PF08064_consen 99 AILL 102 (107)
T ss_pred HHHH
Confidence 5543
No 54
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.38 E-value=1e+03 Score=25.81 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcH
Q 000650 458 QVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQST 537 (1372)
Q Consensus 458 ~l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~ 537 (1372)
...+++++++.+++..+|..|++.+..++...| . .+.++. |...-+..+++.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----v--------------------nP~~cv---p~lIAL~ts~~~ 59 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGL-----V--------------------NPKQCV---PTLIALETSPNP 59 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----C--------------------ChHHHH---hHhhhhhCCCCh
Confidence 344667788889999999999999877765222 1 123321 222223567899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccC
Q 000650 538 DVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGL 596 (1372)
Q Consensus 538 dIr~~iL~~L~~iL~~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL 596 (1372)
.||....+.++++-++++..+. .- -.+-++.||+--+.+..+..
T Consensus 60 ~ir~~A~~~l~~l~eK~~s~v~-----------~~----~~~gi~~af~~~~~l~~~~~ 103 (187)
T PF12830_consen 60 SIRSRAYQLLKELHEKHESLVE-----------SR----YSEGIRLAFDYQRRLSSDSR 103 (187)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-----------HH----HHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999874332 11 12356777776666655544
No 55
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=21.08 E-value=57 Score=31.88 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=31.1
Q ss_pred hhHH--HHHHHHHHHHHHHHHhhhhhccc-ccchHHHHHHHHHHHHHHH
Q 000650 788 KQWD--ETLVLVLGGIARLLRSFFPFLAN-LSNFWTGWESLLHFVKNSI 833 (1372)
Q Consensus 788 k~W~--ET~vlaL~gl~~lf~~~~~~l~~-l~~F~~~W~~LL~~~~~~~ 833 (1372)
..|. ||...++.|++++|-.++..... .+.-.---..|.+|++.+.
T Consensus 17 RTy~DyeSv~~cmegIC~~YE~~LK~~nP~~~~ItYdIs~Lf~fID~l~ 65 (102)
T PF01133_consen 17 RTYSDYESVNECMEGICKIYEEHLKRKNPNSPSITYDISDLFDFIDSLA 65 (102)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHHHHHHSTT-SS----HHHHHHHHHHSS
T ss_pred ceeechhhHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHhhhh
Confidence 4454 79999999999999999876532 2333334677888888763
No 56
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=2.1e+03 Score=28.86 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcchhccccccccCCCchhhhhhhhhhhhHHHHHhccHHHHhccCCcHH
Q 000650 459 VVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFSTQSTD 538 (1372)
Q Consensus 459 l~~hli~v~~~~n~~lr~~Avd~L~~Li~~~L~~e~f~~i~~~~~~~~~~~~~~~~~~~~lq~~ll~pl~~L~~~~~~~d 538 (1372)
+..-+.. ..+|++.+|..|-+.|.++.. ..|..-+..--.+|...+...+
T Consensus 3 ~~~~le~-tlSpD~n~~~~Ae~~l~~~~~-----------------------------~nf~~F~~~Ls~vl~n~~~~~~ 52 (859)
T KOG1241|consen 3 LLELLEK-TLSPDQNVRKRAEKQLEQAQS-----------------------------QNFPQFLVLLSEVLANDNSSDV 52 (859)
T ss_pred HHHHHHH-HcCCCcchHHHHHHHHHHHHh-----------------------------ccHHHHHHHHHHHHhccCCcHH
Q ss_pred HHHHHHHHHHHHHHhcCCccc----CCh--------HHHHHHHHHhhhcCchhHHHHHHHHHHHHHhccCCCCchhhHHH
Q 000650 539 VRAGTLKILLHVLERCGEKLH----YSW--------PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHE 606 (1372)
Q Consensus 539 Ir~~iL~~L~~iL~~~g~~L~----sgW--------~~If~IL~~v~~~~~~~lv~~aF~~LqlI~~DfL~~Lp~~~~~~ 606 (1372)
+|...==.||+-|..+.+..+ +-| ..|=..+..+-...++..-..|=+++--|.. .. ||.+..+.
T Consensus 53 ~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~--~E-lP~n~wp~ 129 (859)
T KOG1241|consen 53 ARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC--IE-LPQNQWPE 129 (859)
T ss_pred HHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH--hh-CchhhCHH
Q ss_pred HHHHHHHhhhcCCCc---cchHhHHHHHHHhHHHHHhccCCCChhhHhhhhcccCCCccccCchhhhhhhccccccccCC
Q 000650 607 CVDVTGAYSSQKTEL---NISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHS 683 (1372)
Q Consensus 607 lI~tL~~F~~Q~~dl---NISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~ 683 (1372)
+|.++.+=+.+..-. .-+|.|+|++=.-.|.=.-.
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~------------------------------------------ 167 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE------------------------------------------ 167 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH------------------------------------------
Q ss_pred CCcchhhhhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHhhhhhhccCCccccc
Q 000650 684 IGMVDRDKLLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQ 763 (1372)
Q Consensus 684 ~~~~~~~~LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~Ls~~~W~~~~~~VLFPLl~~l~~~~~~~s~~e~~ 763 (1372)
...+.....+..+. .-..+-..||=+|...|...+.--+..|..+.=...|-+|+- +.++
T Consensus 168 ---~~sN~iLtaIv~gm--rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc---------------Eatq 227 (859)
T KOG1241|consen 168 ---QQSNDILTAIVQGM--RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC---------------EATQ 227 (859)
T ss_pred ---HHHhHHHHHHHhhc--cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee---------------eccc
Q ss_pred ccccccCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHhhhhhcccccchHHHHHHHHHHHHHHHcCCchHHHHH
Q 000650 764 GKELGTRGGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLA 843 (1372)
Q Consensus 764 ~~~l~~~~~~~~~~l~h~sr~~~~k~W~ET~vlaL~gl~~lf~~~~~~l~~l~~F~~~W~~LL~~~~~~~~~~~~els~a 843 (1372)
..+. +-++-|++.++++..-|++.+. ...=..++...-..|++++++|+..
T Consensus 228 ~~d~------------------------~i~~aa~~ClvkIm~LyY~~m~-----~yM~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 228 SPDE------------------------EIQVAAFQCLVKIMSLYYEFME-----PYMEQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred CCcH------------------------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCcHHHHHH
Q ss_pred HHHHHHHH
Q 000650 844 AINCLQTT 851 (1372)
Q Consensus 844 ~~~sL~~l 851 (1372)
+++.-.++
T Consensus 279 aiEFWsti 286 (859)
T KOG1241|consen 279 AIEFWSTI 286 (859)
T ss_pred HHHHHHHH
Done!