Query 000650
Match_columns 1372
No_of_seqs 252 out of 632
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:56:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000650.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_422-426//hhsearch_pdb/000650hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 36.3 20.9 58 535-594 60-117 (588)
2 1b3u_A Protein (protein phosph 1.0 1 1 35.1 21.4 17 536-552 100-116 (588)
3 2qk2_A LP04448P; mini spindles 1.0 1 1 34.7 18.1 60 534-593 68-127 (242)
4 1qgr_A Protein (importin beta 1.0 1 1 34.3 28.2 31 54-84 34-65 (876)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 34.1 28.5 162 455-638 131-297 (861)
6 1ibr_B P95, importin beta-1 su 1.0 1 1 33.9 21.4 160 454-638 124-290 (462)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 33.2 23.7 158 534-732 445-606 (1230)
8 2bpt_A Importin beta-1 subunit 1.0 1 1 31.8 35.6 15 1344-1358 842-856 (861)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 30.3 30.5 345 453-906 354-701 (852)
10 2qk2_A LP04448P; mini spindles 1.0 1 1 28.4 23.4 183 533-856 25-208 (242)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=36.35 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 737899999999999998149765677689999997722027545799999999999941
Q 000650 535 QSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMND 594 (1372)
Q Consensus 535 ~~~dIr~~iL~~L~~iLe~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqLI~~D 594 (1372)
.+.++|..+.++|..+.+..|.. .-|..++.+|.....+.+...-..|.+++.-++..
T Consensus 60 ~~~~vr~~~~~~L~~~~~~~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~ 117 (588)
T 1b3u_A 60 DEDEVLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117 (588)
T ss_dssp CCHHHHHHHHHHHTTCSGGGTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 85899999999997787605859--89999899999987476079999999999999997
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 37899999999999998
Q 000650 536 STDVRAGTLKILLHVLE 552 (1372)
Q Consensus 536 ~~dIr~~iL~~L~~iLe 552 (1372)
+.+||+...+++.++.+
T Consensus 100 ~~~vR~~a~~~L~~l~~ 116 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISH 116 (588)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 07999999999999999
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=34.68 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 873789999999999999814976567768999999772202754579999999999994
Q 000650 534 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEKDLITLGFQSLRFIMN 593 (1372)
Q Consensus 534 ~~~~dIr~~iL~~L~~iLe~~g~~L~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqLI~~ 593 (1372)
..+..|+...+.++..+....|..+..-+..++..|-....++....-..+..++.-++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 898999999999999999998661798999999999999768988999999999999997
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=34.32 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=13.9
Q ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999871-59984067999999986311
Q 000650 54 EVFLSMLVKVT-FLDLPLWHRILVLEILRGFC 84 (1372)
Q Consensus 54 Ei~LslLi~~l-d~d~~~W~RvL~LEv~r~l~ 84 (1372)
.-|+..|.+.+ +.+.+.=-|.+|...||...
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i 65 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSL 65 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 46999999998578998799999999998760
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=34.08 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCC
Q ss_conf 1999999999985189-988999999999999999831000003000037996223200012456899982107887403
Q 000650 455 LWDQVVGHFLELADNS-NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYFS 533 (1372)
Q Consensus 455 iW~~i~~hli~v~~~~-n~~lR~~Avd~L~~Li~~~l~~e~f~~i~~~~~~~~~~~~~~~~~~~~le~~ll~pl~~L~~~ 533 (1372)
-|+-+...+.+...++ +..+|..|..+|..++...- .+ . + ......+ .++..+......
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~-~~---------------~-~--~~~~~~~-~ll~~l~~~l~~ 190 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD-PQ---------------S-Q--ALVSSSN-NILIAIVQGAQS 190 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS-TT---------------S-S--TTGGGHH-HHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-HH---------------H-H--HHHHHHH-HHHHHHHHHHCC
T ss_conf 5499999999987268978999999999999997278-43---------------5-6--7898899-999999984157
Q ss_pred C-CCHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHH
Q ss_conf 8-7378999999999999981497656--7768999999772202754579999999999994159987632499-9999
Q 000650 534 T-QSTDVRAGTLKILLHVLERCGEKLH--YSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-ECVD 609 (1372)
Q Consensus 534 ~-~~~dIr~~iL~~L~~iLe~~g~~L~--sgW~~If~IL~~v~~~~~~~lv~~aF~~LqLI~~DfL~~Lp~~~~~-~lId 609 (1372)
. .+.+||..+++++..+++..++.+. ..|..++..+.......+...-+.+++++..++..+-..+. +.+. .++.
T Consensus 191 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~~l~~ 269 (861)
T 2bpt_A 191 TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK-PYMEQALYA 269 (861)
T ss_dssp TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH-HHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 9998789999999999999999987067668999999999986599889999999999999999889999-988999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99986605777540476989799869998
Q 000650 610 VTGAYSSQKTELNISLTAVGLLWTTTDFI 638 (1372)
Q Consensus 610 tL~~F~~Q~~dlNISLtAi~llW~isD~L 638 (1372)
.+.... ++.+..+...++.++-.+++..
T Consensus 270 ~~~~~~-~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 270 LTIATM-KSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999987-3772789999999999999878
No 6
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=33.90 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 01999999999985189--9889999999999999998310000030000379962232000124568999821078874
Q 000650 454 PLWDQVVGHFLELADNS--NQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLY 531 (1372)
Q Consensus 454 ~iW~~i~~hli~v~~~~--n~~lR~~Avd~L~~Li~~~l~~e~f~~i~~~~~~~~~~~~~~~~~~~~le~~ll~pl~~L~ 531 (1372)
.-|+-+...++....++ +..+|..|..+|..++...-. +. ....++ .++..+....
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~--------------------~~~~~~-~ll~~l~~~l 181 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQ--------------------LQDKSN-EILTAIIQGM 181 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GG--------------------TGGGHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HH--------------------HHHHHH-HHHHHHHHHH
T ss_conf 0269999999998626788789999999999999981871-53--------------------476799-9999999986
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH-H
Q ss_conf 038-7378999999999999981497656776---8999999772202754579999999999994159987632499-9
Q 000650 532 FST-QSTDVRAGTLKILLHVLERCGEKLHYSW---PSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIH-E 606 (1372)
Q Consensus 532 ~~~-~~~dIr~~iL~~L~~iLe~~g~~L~sgW---~~If~IL~~v~~~~~~~lv~~aF~~LqLI~~DfL~~Lp~~~~~-~ 606 (1372)
... .+.+||...++++.++++...+.. ..| ..++.++.......+.+....+++++..++..+-..+. +.+. .
T Consensus 182 ~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~ 259 (462)
T 1ibr_B 182 RKEEPSNNVKLAATNALLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPA 259 (462)
T ss_dssp STTCCCHHHHHHHHHHHHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 7999989999999999999999999843-23678989999999853799789999999999999999899999-888889
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999986605777540476989799869998
Q 000650 607 CVDVTGAYSSQKTELNISLTAVGLLWTTTDFI 638 (1372)
Q Consensus 607 lIdtL~~F~~Q~~dlNISLtAi~llW~isD~L 638 (1372)
++..+.... ++.+.++...++.++-.+++..
T Consensus 260 l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 260 LFAITIEAM-KSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998-2886099999999999999988
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=33.19 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 873789999999999999814976567768999999772202754--579999999999994159987632499999999
Q 000650 534 TQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVADASEK--DLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 534 ~~~~dIr~~iL~~L~~iLe~~g~~L~sgW~~If~IL~~v~~~~~~--~lv~~aF~~LqLI~~DfL~~Lp~~~~~~lIdtL 611 (1372)
..+..+|...+..+..++...+..+..-++.++..+.....++.. .....+...+..++..+-...-...+..++..+
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L 524 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 524 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 37787999999999999997611057779999999999974878851689999999999998389887886799999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 98660577754047698979986999870447897046763201457886446740345421034544467777210243
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 691 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 691 (1372)
.... ++.+..+...+++.+-.+...+... . . . .... ...
T Consensus 525 ~~~l-~d~~~~v~~~al~~l~~l~~~~~~~---~-~-----------~----------------------~~~~---~~~ 563 (1230)
T 1u6g_C 525 VACV-GDPFYKITSEALLVTQQLVKVIRPL---D-Q-----------P----------------------SSFD---ATP 563 (1230)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHHHHHCCS---S-S-----------C----------------------CCCC---CHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHHHHHHCCC---C-C-----------C----------------------CCCC---HHH
T ss_conf 9997-1424689999999999999871675---5-5-----------6----------------------5323---278
Q ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 4999999998630--4897889999999999999751599997
Q 000650 692 LLFAVFSLLKKLG--ADERPEVRNSAIRTLFQTLGSHGQKLSE 732 (1372)
Q Consensus 692 LW~~LL~~L~~L~--~D~R~EVRn~AIqTLfril~s~g~~ls~ 732 (1372)
+.-.++..+.... .|..++||..|+.++-.+...-|..+.+
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~ 606 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGS 606 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9999999999987326998899999999999999982703244
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=31.79 Aligned_cols=15 Identities=0% Similarity=-0.088 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 489999999999986
Q 000650 1344 ARVRELVQVLLRLIT 1358 (1372)
Q Consensus 1344 ~~v~~ll~~~l~~vg 1358 (1372)
.+++...+=+++.+.
T Consensus 842 ~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 842 QATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 778999999999999
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=30.26 Aligned_cols=345 Identities=12% Similarity=0.048 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 00199999999998518998899999999999999983100000300003799622320001245689998210788740
Q 000650 453 EPLWDQVVGHFLELADNSNQHLRNIALDALDQSICAVLGSEKFQDSASRQRGTSDEVESRHGDLRSIECAVISPLRVLYF 532 (1372)
Q Consensus 453 ~~iW~~i~~hli~v~~~~n~~lR~~Avd~L~~Li~~~l~~e~f~~i~~~~~~~~~~~~~~~~~~~~le~~ll~pl~~L~~ 532 (1372)
+.+-+.+..++.+...+++..+|.-|+.+|..+....- +. ....++ .++..+..+ .
T Consensus 354 ~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-----------------~~-----~~~~l~-~~l~~l~~~-l 409 (852)
T 4fdd_A 354 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-----------------QG-----MIPYLP-ELIPHLIQC-L 409 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-----------------HH-----HGGGHH-HHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH-----------------HH-----HHHHHH-HHHHHHHHH-C
T ss_conf 87899999999998559988999999999999986356-----------------88-----998799-999999987-1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 38737899999999999998149765-67768999999772202754579999999999994159987632499999999
Q 000650 533 STQSTDVRAGTLKILLHVLERCGEKL-HYSWPSILELLRSVADASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 533 ~~~~~dIr~~iL~~L~~iLe~~g~~L-~sgW~~If~IL~~v~~~~~~~lv~~aF~~LqLI~~DfL~~Lp~~~~~~lIdtL 611 (1372)
...+..||.....++.++-+..+... ..--..++..+-....+.+...-..+...+.-++...-..+ ...+..++..+
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L 488 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTL 488 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 79988999999999999998861104789999999999999858988899999999999999736766-76799999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 98660577754047698979986999870447897046763201457886446740345421034544467777210243
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 691 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 691 (1372)
.....+...-+. ..+.+.++.+.+....... ...+..
T Consensus 489 ~~~l~~~~~~~~-~~~~~ai~~l~~~~~~~~~------------------------------------------~~~~~~ 525 (852)
T 4fdd_A 489 VFAFSKYQHKNL-LILYDAIGTLADSVGHHLN------------------------------------------KPEYIQ 525 (852)
T ss_dssp HHHHHHCCHHHH-HHHHHHHHHHHHHHGGGGC------------------------------------------CHHHHH
T ss_pred HHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHC------------------------------------------CHHHHH
T ss_conf 999988374799-9999999999997424313------------------------------------------678999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 49999999986304897889999999999999751599997799999999599779863322004770000023346678
Q 000650 692 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 771 (1372)
Q Consensus 692 LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~il~~VLfPLLd~i~~~~~~~s~~e~~~~el~~~~ 771 (1372)
-.|+.+...-+...|+.+++| .+++++-.+..+.|..|.+- -..++.. +..++.......... .++.+.
T Consensus 526 ~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~-~~~~l~~~l~~~~~~----~~~~~~---- 594 (852)
T 4fdd_A 526 MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQR-CVNLVQKTLAQAMLN----NAQPDQ---- 594 (852)
T ss_dssp HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHH-HHHHHHHHHHHHHHH----HHCTTT----
T ss_pred HHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHH----HCCCCC----
T ss_conf 988999999873330469999-99999999999974867988-9999999-999999999999875----338866----
Q ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 864022202455312342899999999999999996301001435249999--999999999871990579999999999
Q 000650 772 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGW--ESLLHFVKNSILNGSKEVSLAAINCLQ 849 (1372)
Q Consensus 772 g~~~~~l~hhsr~~~~k~W~ET~vl~L~gl~~lf~~~~~~l~~~~~F~~~W--~~LL~~~~~~~~~~~~eis~aa~~sL~ 849 (1372)
.+...++-..+..-++.++++-+...+ ...+ ..++..+..++...+.++-..++..+.
T Consensus 595 -----------~~~~d~~~~~~~l~~l~~l~~~l~~~~---------~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~ 654 (852)
T 4fdd_A 595 -----------YEAPDKDFMIVALDLLSGLAEGLGGNI---------EQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 654 (852)
T ss_dssp -----------SCCCCTHHHHHHHHHHHHHHHHHGGGG---------HHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHHHHH---------HHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf -----------688761199999999978999874769---------988367718999999838998449999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999731489999856799999999983158999888877520599999789999997
Q 000650 850 TTVLSHSTKGNLPVAYLNSVLDVYEYALQKSPNYSDNAAGKVKQEILHGLGELYVQA 906 (1372)
Q Consensus 850 ~lL~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~qe~l~~f~~ly~~~ 906 (1372)
.+........ ..+.........+... .+ .......++.+.+++-+..
T Consensus 655 ~l~~~~~~~~---~~~l~~~lp~l~~~l~----~~---~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 655 DLTKACFQHV---KPCIADFMPILGTNLN----PE---FISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HHHHHCGGGT---GGGHHHHHHHHHHTCC----TT---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHCC----CC---CHHHHHHHHHHHHHHHHHH
T ss_conf 9999816888---9879999999998769----42---0689999999999999971
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=28.42 Aligned_cols=183 Identities=15% Similarity=0.054 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 387378999999999999981497656776899999977220-2754579999999999994159987632499999999
Q 000650 533 STQSTDVRAGTLKILLHVLERCGEKLHYSWPSILELLRSVAD-ASEKDLITLGFQSLRFIMNDGLSSIPTDCIHECVDVT 611 (1372)
Q Consensus 533 ~~~~~dIr~~iL~~L~~iLe~~g~~L~sgW~~If~IL~~v~~-~~~~~lv~~aF~~LqLI~~DfL~~Lp~~~~~~lIdtL 611 (1372)
.+.+-..|...+..|..+++.++.........++..|..... +++......|+.++..++.
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~------------------ 86 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK------------------ 86 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH------------------
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH------------------
T ss_conf 63878999999999999871288888777999999999984568989999999999999999------------------
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 98660577754047698979986999870447897046763201457886446740345421034544467777210243
Q 000650 612 GAYSSQKTELNISLTAVGLLWTTTDFIAKGLVHGISEEKEAANQDLCSVPKQMDGEKREEKTLSNLDDQNHSIGMVDRDK 691 (1372)
Q Consensus 612 ~~F~~Q~~dlNISLtAi~llW~isD~L~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 691 (1372)
.+... ...
T Consensus 87 -------------------------~l~~~-----------------------------------------------~~~ 94 (242)
T 2qk2_A 87 -------------------------GLAKR-----------------------------------------------FSN 94 (242)
T ss_dssp -------------------------HHGGG-----------------------------------------------GHH
T ss_pred -------------------------HHHHH-----------------------------------------------HHH
T ss_conf -------------------------98661-----------------------------------------------798
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 49999999986304897889999999999999751599997799999999599779863322004770000023346678
Q 000650 692 LLFAVFSLLKKLGADERPEVRNSAIRTLFQTLGSHGQKLSESMWEDCLWNYVFPMLDCASHMAATSSKDEWQGKELGTRG 771 (1372)
Q Consensus 692 LW~~LL~~L~~L~~D~R~EVRn~AIqTLfril~s~g~~ls~~~W~~il~~VLfPLLd~i~~~~~~~s~~e~~~~el~~~~ 771 (1372)
.+-.++-.|.....|+.+.||..|..+|-.++...+ +.. ++|.+.....
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----------~~~-ll~~l~~~l~------------------- 143 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----------LEA-QQESIVESLS------------------- 143 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----------HHH-HHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-----------HHH-HHHHHHHHHC-------------------
T ss_conf 999999999999768988999999999999997289-----------999-9999999884-------------------
Q ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 86402220245531234289999999999999999630100143524999999999999987199057999999999999
Q 000650 772 GKAVHMLIHHSRNTAQKQWDETLVLVLGGIARLLRSFFPFLANLSNFWTGWESLLHFVKNSILNGSKEVSLAAINCLQTT 851 (1372)
Q Consensus 772 g~~~~~l~hhsr~~~~k~W~ET~vl~L~gl~~lf~~~~~~l~~~~~F~~~W~~LL~~~~~~~~~~~~eis~aa~~sL~~l 851 (1372)
| +.| ..+.-++.-+..++..+-. ...+...+..++.++..++.....++-.+++.++..+
T Consensus 144 --------~-------~~~-~vr~~~l~~l~~~l~~~~~----~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 144 --------N-------KNP-SVKSETALFIARALTRTQP----TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp --------C-------SCH-HHHHHHHHHHHHHHTTCCG----GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred --------C-------CCH-HHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf --------8-------983-9999999999999987188----7766899999999999884699858999999999999
Q ss_pred HHHHC
Q ss_conf 97314
Q 000650 852 VLSHS 856 (1372)
Q Consensus 852 L~~~~ 856 (1372)
....+
T Consensus 204 ~~~vg 208 (242)
T 2qk2_A 204 IKLMG 208 (242)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 99849
Done!