Query 000652
Match_columns 1372
No_of_seqs 271 out of 455
Neff 6.0
Searched_HMMs 46136
Date Mon Apr 1 21:29:08 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1997 PH domain-containing p 100.0 1.2E-98 3E-103 936.4 18.5 856 455-1372 17-1113(1518)
2 cd08696 C2_Dock-C C2 domains f 100.0 8.3E-52 1.8E-56 436.7 17.4 168 469-639 1-179 (179)
3 cd08697 C2_Dock-D C2 domains f 100.0 6.2E-51 1.3E-55 431.7 16.9 169 469-639 1-185 (185)
4 PF14429 DOCK-C2: C2 domain in 100.0 5.1E-42 1.1E-46 368.7 11.9 171 465-639 1-184 (184)
5 cd08679 C2_DOCK180_related C2 100.0 3E-38 6.5E-43 337.7 16.6 164 469-639 1-178 (178)
6 cd08694 C2_Dock-A C2 domains f 100.0 4.8E-37 1E-41 325.6 16.1 166 469-639 1-196 (196)
7 cd08695 C2_Dock-B C2 domains f 100.0 6E-37 1.3E-41 325.0 16.2 164 469-639 1-189 (189)
8 KOG1998 Signaling protein DOCK 99.9 6.9E-25 1.5E-29 281.2 18.1 398 467-901 256-689 (1548)
9 KOG1997 PH domain-containing p 99.8 4.2E-24 9E-29 270.1 -13.8 949 148-1204 59-1261(1518)
10 PF11878 DUF3398: Domain of un 99.3 1.2E-12 2.6E-17 126.8 3.7 57 19-75 28-98 (98)
11 PF00792 PI3K_C2: Phosphoinosi 92.0 0.43 9.4E-06 49.8 7.4 78 523-601 23-104 (142)
12 cd04013 C2_SynGAP_like C2 doma 86.7 4.6 0.0001 42.7 10.0 61 519-583 38-98 (146)
13 cd08408 C2B_Synaptotagmin-14_1 85.8 4.2 9E-05 42.4 9.2 60 521-585 54-113 (138)
14 cd08384 C2B_Rabphilin_Doc2 C2 85.5 5.3 0.00012 40.7 9.8 60 521-585 51-110 (133)
15 cd00276 C2B_Synaptotagmin C2 d 83.3 4.8 0.0001 40.7 8.3 58 521-583 52-109 (134)
16 cd08380 C2_PI3K_like C2 domain 79.8 3.7 8.1E-05 43.4 6.2 66 530-598 55-123 (156)
17 cd04016 C2_Tollip C2 domain pr 78.8 7.5 0.00016 39.7 7.7 54 521-582 34-88 (121)
18 cd08403 C2B_Synaptotagmin-3-5- 77.3 12 0.00025 38.4 8.8 58 522-584 53-110 (134)
19 cd08397 C2_PI3K_class_III C2 d 77.0 7.5 0.00016 41.7 7.4 66 531-603 58-128 (159)
20 cd08392 C2A_SLP-3 C2 domain fi 75.7 14 0.0003 38.0 8.7 57 521-582 54-110 (128)
21 cd08382 C2_Smurf-like C2 domai 75.6 6.9 0.00015 39.6 6.5 56 521-583 34-89 (123)
22 cd08690 C2_Freud-1 C2 domain f 74.7 7.9 0.00017 41.4 6.8 60 520-583 41-106 (155)
23 cd04029 C2A_SLP-4_5 C2 domain 74.5 6 0.00013 40.3 5.7 57 521-582 54-110 (125)
24 PF13176 TPR_7: Tetratricopept 74.3 4.5 9.8E-05 32.0 3.7 28 1341-1368 2-29 (36)
25 cd08402 C2B_Synaptotagmin-1 C2 73.8 14 0.0003 38.0 8.2 59 522-585 54-112 (136)
26 cd08398 C2_PI3K_class_I_alpha 73.8 19 0.0004 38.7 9.3 66 531-597 53-121 (158)
27 cd08693 C2_PI3K_class_I_beta_d 73.5 7.8 0.00017 42.1 6.5 71 530-600 54-138 (173)
28 cd08388 C2A_Synaptotagmin-4-11 73.4 15 0.00034 37.5 8.4 57 522-583 54-111 (128)
29 cd08682 C2_Rab11-FIP_classI C2 73.1 9.4 0.0002 38.6 6.7 57 521-582 32-91 (126)
30 cd08686 C2_ABR C2 domain in th 72.9 12 0.00026 38.2 7.3 58 520-581 31-90 (118)
31 cd08393 C2A_SLP-1_2 C2 domain 71.9 15 0.00032 37.4 7.9 58 521-583 54-111 (125)
32 cd08390 C2A_Synaptotagmin-15-1 71.9 6.7 0.00015 39.3 5.3 56 522-582 52-107 (123)
33 cd08399 C2_PI3K_class_I_gamma 71.7 20 0.00043 39.3 9.1 66 530-597 56-137 (178)
34 cd04044 C2A_Tricalbin-like C2 71.6 10 0.00022 37.8 6.6 55 520-582 37-91 (124)
35 cd08410 C2B_Synaptotagmin-17 C 71.3 5.2 0.00011 41.2 4.4 59 522-585 53-111 (135)
36 cd08405 C2B_Synaptotagmin-7 C2 71.1 5.5 0.00012 40.9 4.6 59 522-585 54-112 (136)
37 cd08404 C2B_Synaptotagmin-4 C2 70.7 5.7 0.00012 40.9 4.5 58 521-583 53-110 (136)
38 smart00239 C2 Protein kinase C 70.5 13 0.00027 34.5 6.5 56 520-582 35-90 (101)
39 cd08689 C2_fungal_Pkc1p C2 dom 70.3 5.9 0.00013 39.7 4.3 45 529-583 41-85 (109)
40 cd04030 C2C_KIAA1228 C2 domain 70.0 11 0.00024 37.9 6.5 61 520-583 53-113 (127)
41 cd04032 C2_Perforin C2 domain 69.2 10 0.00022 39.1 5.9 56 521-582 60-115 (127)
42 cd08409 C2B_Synaptotagmin-15 C 69.1 26 0.00056 36.3 9.0 57 521-582 52-108 (137)
43 cd04012 C2A_PI3K_class_II C2 d 68.7 11 0.00024 40.7 6.5 69 530-598 60-135 (171)
44 cd08373 C2A_Ferlin C2 domain f 68.2 12 0.00026 37.8 6.3 56 522-582 28-83 (127)
45 cd08385 C2A_Synaptotagmin-1-5- 68.2 6.2 0.00013 39.7 4.2 58 521-583 52-109 (124)
46 cd04009 C2B_Munc13-like C2 dom 67.7 8.9 0.00019 39.4 5.2 57 521-582 56-114 (133)
47 cd04038 C2_ArfGAP C2 domain pr 67.2 13 0.00029 39.1 6.4 97 521-628 34-139 (145)
48 cd04042 C2A_MCTP_PRT C2 domain 65.5 17 0.00037 36.5 6.6 54 521-582 34-87 (121)
49 cd00030 C2 C2 domain. The C2 d 65.0 18 0.00039 33.1 6.3 57 520-583 32-88 (102)
50 cd08395 C2C_Munc13 C2 domain t 64.6 18 0.0004 36.9 6.7 57 521-582 39-96 (120)
51 cd08678 C2_C21orf25-like C2 do 63.9 21 0.00046 36.1 7.1 55 521-583 32-86 (126)
52 cd04041 C2A_fungal C2 domain f 63.8 17 0.00037 36.0 6.3 57 521-582 38-95 (111)
53 cd04043 C2_Munc13_fungal C2 do 63.6 17 0.00036 36.6 6.2 55 521-582 37-91 (126)
54 cd08521 C2A_SLP C2 domain firs 63.4 30 0.00066 34.5 8.1 58 521-583 53-110 (123)
55 cd08688 C2_KIAA0528-like C2 do 63.4 17 0.00036 36.0 6.1 58 520-582 32-90 (110)
56 PF11698 V-ATPase_H_C: V-ATPas 62.9 29 0.00063 35.6 7.6 74 1122-1201 43-118 (119)
57 cd08680 C2_Kibra C2 domain fou 61.7 13 0.00029 38.1 5.1 58 521-583 53-110 (124)
58 cd04039 C2_PSD C2 domain prese 61.1 25 0.00055 34.9 6.9 56 521-582 38-93 (108)
59 cd04048 C2A_Copine C2 domain f 61.0 15 0.00033 36.8 5.4 62 519-583 38-99 (120)
60 cd04031 C2A_RIM1alpha C2 domai 59.6 33 0.00072 34.3 7.5 58 521-583 54-112 (125)
61 cd00275 C2_PLC_like C2 domain 57.0 24 0.00052 35.3 6.1 54 521-582 43-97 (128)
62 cd04033 C2_NEDD4_NEDD4L C2 dom 56.9 27 0.00058 35.5 6.4 55 520-582 39-93 (133)
63 cd04040 C2D_Tricalbin-like C2 55.9 28 0.00061 34.3 6.2 54 522-582 34-87 (115)
64 cd08376 C2B_MCTP_PRT C2 domain 54.8 37 0.0008 33.6 6.9 55 521-582 33-87 (116)
65 PF14186 Aida_C2: Cytoskeletal 54.5 1.3E+02 0.0029 32.1 11.0 107 471-598 13-124 (147)
66 cd04021 C2_E3_ubiquitin_ligase 54.0 32 0.00069 35.0 6.4 52 521-581 35-86 (125)
67 cd04036 C2_cPLA2 C2 domain pre 53.8 22 0.00048 35.5 5.2 54 521-582 36-89 (119)
68 cd08381 C2B_PI3K_class_II C2 d 53.6 17 0.00036 36.9 4.3 57 521-582 50-107 (122)
69 cd04015 C2_plant_PLD C2 domain 53.4 38 0.00083 36.1 7.1 52 522-582 72-123 (158)
70 cd08387 C2A_Synaptotagmin-8 C2 52.6 22 0.00048 35.7 4.9 57 522-583 53-109 (124)
71 cd08375 C2_Intersectin C2 doma 52.1 30 0.00065 35.9 5.9 55 521-582 48-102 (136)
72 PF00168 C2: C2 domain; Inter 51.9 15 0.00033 33.3 3.4 51 520-577 34-84 (85)
73 cd08677 C2A_Synaptotagmin-13 C 51.9 27 0.00058 35.8 5.3 58 520-582 47-104 (118)
74 cd08401 C2A_RasA2_RasA3 C2 dom 51.8 43 0.00093 33.9 6.9 53 522-582 36-88 (121)
75 cd08681 C2_fungal_Inn1p-like C 51.7 32 0.0007 34.1 5.9 53 522-582 35-88 (118)
76 cd08406 C2B_Synaptotagmin-12 C 51.7 20 0.00042 37.4 4.4 58 523-585 55-112 (136)
77 cd04035 C2A_Rabphilin_Doc2 C2 51.1 25 0.00055 35.2 5.1 56 521-582 53-109 (123)
78 cd04028 C2B_RIM1alpha C2 domai 50.8 39 0.00085 35.7 6.6 56 520-582 67-122 (146)
79 PF07719 TPR_2: Tetratricopept 50.7 27 0.0006 26.3 4.1 29 1339-1367 2-30 (34)
80 cd08377 C2C_MCTP_PRT C2 domain 50.5 35 0.00075 33.8 5.9 54 522-583 35-88 (119)
81 cd04025 C2B_RasA1_RasA4 C2 dom 49.6 46 0.001 33.4 6.7 54 522-582 34-87 (123)
82 cd04051 C2_SRC2_like C2 domain 49.4 28 0.00061 35.0 5.1 56 523-583 36-94 (125)
83 cd08386 C2A_Synaptotagmin-7 C2 49.2 29 0.00062 34.9 5.1 57 522-583 53-110 (125)
84 cd04014 C2_PKC_epsilon C2 doma 48.8 37 0.00081 34.6 6.0 51 523-582 50-100 (132)
85 PF13374 TPR_10: Tetratricopep 48.7 31 0.00066 27.1 4.2 30 1339-1368 3-32 (42)
86 cd04018 C2C_Ferlin C2 domain t 46.8 48 0.001 35.3 6.5 55 522-582 48-102 (151)
87 cd04052 C2B_Tricalbin-like C2 46.7 51 0.0011 32.6 6.4 54 521-582 26-79 (111)
88 cd08389 C2A_Synaptotagmin-14_1 46.4 27 0.00059 35.4 4.5 56 522-583 53-109 (124)
89 cd04010 C2B_RasA3 C2 domain se 46.2 32 0.00069 36.4 5.1 58 521-583 36-106 (148)
90 KOG1030 Predicted Ca2+-depende 43.5 53 0.0012 35.6 6.1 54 520-581 38-91 (168)
91 cd08685 C2_RGS-like C2 domain 43.5 38 0.00083 34.2 5.0 58 521-583 49-106 (119)
92 cd04054 C2A_Rasal1_RasA4 C2 do 42.0 69 0.0015 32.2 6.6 52 522-581 35-86 (121)
93 cd04026 C2_PKC_alpha_gamma C2 40.7 58 0.0013 33.0 5.9 56 521-582 51-106 (131)
94 cd08676 C2A_Munc13-like C2 dom 40.4 60 0.0013 34.7 6.0 52 520-582 89-140 (153)
95 cd04022 C2A_MCTP_PRT_plant C2 40.3 53 0.0012 33.2 5.5 58 521-582 33-91 (127)
96 cd04047 C2B_Copine C2 domain s 40.2 1.6E+02 0.0034 28.8 8.7 57 520-582 38-96 (110)
97 cd08407 C2B_Synaptotagmin-13 C 40.0 44 0.00095 35.0 4.9 60 521-585 55-114 (138)
98 PLN03076 ARF guanine nucleotid 39.2 1.9E+02 0.0041 42.2 12.1 109 918-1031 1348-1470(1780)
99 cd04037 C2E_Ferlin C2 domain f 38.9 87 0.0019 31.8 6.8 54 522-582 36-89 (124)
100 cd04050 C2B_Synaptotagmin-like 38.0 59 0.0013 31.7 5.3 53 520-582 32-84 (105)
101 cd08378 C2B_MCTP_PRT_plant C2 37.7 56 0.0012 33.0 5.2 53 522-582 30-82 (121)
102 cd08391 C2A_C2C_Synaptotagmin_ 37.5 81 0.0018 31.2 6.2 54 521-582 40-93 (121)
103 cd04027 C2B_Munc13 C2 domain s 36.0 88 0.0019 31.8 6.3 59 522-583 35-99 (127)
104 cd04046 C2_Calpain C2 domain p 35.4 1.3E+02 0.0028 30.5 7.4 54 521-583 36-89 (126)
105 cd08394 C2A_Munc13 C2 domain f 34.6 1.1E+02 0.0023 32.0 6.5 52 521-582 32-83 (127)
106 PLN03008 Phospholipase D delta 33.1 78 0.0017 42.2 6.5 52 521-581 90-141 (868)
107 cd04049 C2_putative_Elicitor-r 32.1 1.3E+02 0.0028 30.2 6.7 56 522-582 35-92 (124)
108 cd08692 C2B_Tac2-N C2 domain s 32.0 1.8E+02 0.0039 30.6 7.8 57 520-582 51-108 (135)
109 cd04024 C2A_Synaptotagmin-like 31.5 1.2E+02 0.0025 30.4 6.3 55 521-582 36-90 (128)
110 cd04045 C2C_Tricalbin-like C2 30.6 1.2E+02 0.0026 30.6 6.2 54 521-582 35-88 (120)
111 KOG2758 Translation initiation 30.0 1.6E+02 0.0035 35.2 7.6 45 1325-1370 117-161 (432)
112 cd08691 C2_NEDL1-like C2 domai 28.1 1.8E+02 0.0039 30.4 7.1 56 521-582 46-102 (137)
113 cd04011 C2B_Ferlin C2 domain s 28.0 1E+02 0.0022 30.4 5.1 57 521-582 33-91 (111)
114 PF12755 Vac14_Fab1_bd: Vacuol 27.6 1E+02 0.0022 30.4 4.9 41 662-702 48-88 (97)
115 PF08767 CRM1_C: CRM1 C termin 27.2 7.9E+02 0.017 29.4 13.2 79 888-976 141-221 (319)
116 cd08383 C2A_RasGAP C2 domain ( 24.2 2.3E+02 0.0049 27.8 6.8 37 522-559 32-68 (117)
117 cd04020 C2B_SLP_1-2-3-4 C2 dom 24.0 1E+02 0.0022 33.1 4.5 57 521-582 65-122 (162)
118 cd08675 C2B_RasGAP C2 domain s 23.1 1.9E+02 0.004 30.0 6.1 57 521-582 35-104 (137)
119 PLN02952 phosphoinositide phos 22.1 1.2E+02 0.0025 39.5 5.1 39 520-560 513-551 (599)
120 PLN03200 cellulose synthase-in 21.9 89 0.0019 45.8 4.4 61 523-592 2014-2079(2102)
121 PF14559 TPR_19: Tetratricopep 21.8 2E+02 0.0044 25.1 5.4 42 1318-1363 9-50 (68)
122 smart00028 TPR Tetratricopepti 21.5 1.1E+02 0.0025 20.8 3.1 25 1342-1366 5-29 (34)
123 PF02985 HEAT: HEAT repeat; I 21.4 1.8E+02 0.0039 22.2 4.2 26 1173-1198 4-29 (31)
124 PF13513 HEAT_EZ: HEAT-like re 21.4 1.9E+02 0.004 24.7 4.8 46 663-708 9-54 (55)
125 PF13424 TPR_12: Tetratricopep 21.0 1.6E+02 0.0035 26.6 4.7 41 1327-1367 35-75 (78)
126 cd04019 C2C_MCTP_PRT_plant C2 20.9 2.4E+02 0.0053 29.8 6.6 56 521-583 33-89 (150)
127 PF11841 DUF3361: Domain of un 20.2 2.4E+02 0.0052 30.6 6.2 96 846-953 32-138 (160)
No 1
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-98 Score=936.40 Aligned_cols=856 Identities=19% Similarity=0.156 Sum_probs=683.9
Q ss_pred cccccCCCCCCCccccceEEEEeccceecc----ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecC
Q 000652 455 FDFRTTTRNEPFLQLFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGA 530 (1372)
Q Consensus 455 ~ef~~~~~~~P~t~yrN~LYVYP~~lnFsk----aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHn 530 (1372)
+||+..+++.|++.|||.||+||..++|.. ++||.++++.+-.. +.+..+++++|++.++++....+|+|.||+
T Consensus 17 Lef~~~E~~~~~~~yR~~Ld~q~~~lqf~~~~n~a~ni~~~~~~~~~e--~~~~~~~v~~~~st~~~~lq~~~t~v~~~d 94 (1518)
T KOG1997|consen 17 LEFPAREVIFPHTFYRNLLDVQPACLQFQILVNSAENILTRDQTMPVE--DAGIRRPVIFGKSTLREFLQEPPTTVNYHD 94 (1518)
T ss_pred cccCCccccccchhhhhHHhhhhHHHHHHHHhhhhhhhhhhhhhchhh--hhccchhhhHHHhhhHHHhccCCccccccc
Confidence 677888999999999999999999999964 69999999666544 456788999999999999999999999999
Q ss_pred CCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCCcccc-eeeEEEeec-CCccccccc-
Q 000652 531 RMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS-EISLPIIKE-LVPHYLQET- 607 (1372)
Q Consensus 531 k~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~grL~~-e~~LPV~~~-lpp~YL~~~- 607 (1372)
++|+||++.++.+|+....+||++|+|||++|+++.++-.+++.|+.|+|++...++.. ..++||+.. .++.|....
T Consensus 95 ~S~~~~~s~l~~lda~sl~nlh~~fv~yl~~sq~~~~~~~et~~~n~~~~~~i~~el~~q~~~~k~~lfn~k~~ys~mi~ 174 (1518)
T KOG1997|consen 95 KSIEFYESRLLSLDAKSLAKLHLLFVFYLTSSQQHPGAIAETPKPNLWLLLLIRHELSLQSDNLKVKLFNCKDRYSKMII 174 (1518)
T ss_pred ccHHHHhhhhhcCCchHHHHHHHHHHhhccccccchhhhhhcccccccchhhHHHHhhhcccCCCccccCCChhhhhhcc
Confidence 99999999999999999999999999999999999888889999999999997666655 677777664 567885432
Q ss_pred --cccccccccCCcceEEEEEEeeccccccchHHHHHHhhhhhccccCC-C-----------CChhHHHHHHHhhhcCCh
Q 000652 608 --GKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTS-P-----------PWGSELLEAINSLKNVDS 673 (1372)
Q Consensus 608 --~~p~~kwvd~~K~~F~V~t~lvSTv~TQD~~L~~Ff~~~~~~~~~t~-~-----------~~~~eL~~~l~~L~~v~~ 673 (1372)
..+.+.|+ |+.|++....+|+|++||+++.+||..++... ... | +.+.++.-+........+
T Consensus 175 ~~~~~~~~~~---r~~f~~~~~~l~sV~~~D~~~sk~f~~~~~~~-~~a~p~~ll~~~~se~~d~~e~~lS~~~~~~g~p 250 (1518)
T KOG1997|consen 175 PVYNSVGTWA---RGPFNPELIPLSSVHPQDPYLSKFFTALHSLE-QNAFPHRLLTNLLSELPDANELRLSFARTREGIP 250 (1518)
T ss_pred ccccccccee---ccccccccccceecCcCCcccCcceeeeeecc-CccchhhhhhhhhhhhccccccccchhhhhccCc
Confidence 24678998 89999999999999999999999999986543 211 0 012233344555667778
Q ss_pred HHHHHhHHHHHHHHHHHHhcC----C--cchhHHHHHHHHHHHHhhcc---cCcchhhhchhHHhHHhhhccCCCCCC--
Q 000652 674 TALLQFLHPVLNMLLHLIGNG----G--ETLQVAAFRAMVNILTRVQQ---ESVDDAERNRFLVNYVDYAFDDFGGRQ-- 742 (1372)
Q Consensus 674 ~~lv~FLp~ILd~Lf~ll~~~----~--~~~~~~aF~~Lv~Ii~~v~~---~~~d~~~r~~vL~sYI~y~F~~~~~~~-- 742 (1372)
+..++|+|..++++..+..+. + ...+.++|++...+++..+. .+++.++.++....|.+|.|..+....
T Consensus 251 Er~~~f~~~~lfav~~l~~~pv~Ia~~e~~l~~n~t~~~e~lik~~h~sK~as~n~k~~~c~~s~ig~Y~~plaw~ar~l 330 (1518)
T KOG1997|consen 251 ERLLKFLHQDLFAVVHLHFRPVLIAGIEAVLQGNITESDEPLIKLSHNSKAASSNLKGSKCTESPIGHYRMPLAWAARPL 330 (1518)
T ss_pred hhhhhccchhhhhcccccccceEEEeeeeecccccccccchhhccCchhhhhhhhcccccccCCcccceecccccccCCC
Confidence 999999999999998875542 2 23456788887777777664 445678899999999999997653211
Q ss_pred -----CCC---------CCC----chhHHHHHHhhh----h---------------------------------------
Q 000652 743 -----PPV---------YPG----LSTVWGSLARSK----A--------------------------------------- 761 (1372)
Q Consensus 743 -----~~~---------y~~----L~~~~~~L~rs~----~--------------------------------------- 761 (1372)
+++ |.. .+.....+.+.. .
T Consensus 331 ~~D~ap~~~~~a~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde~ls~V~~~kll~~t~~~ms~~l~~~sn~ 410 (1518)
T KOG1997|consen 331 PVDGAPPALLDARNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDDLLSMVEFFLLLIVTPFALSRALYYDSNA 410 (1518)
T ss_pred CcCCCCccccccchhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchhhhhhhhhHHHHhhhhHHHHHHHhccCCC
Confidence 111 100 000001111110 0
Q ss_pred ---------------ccCccCccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 000652 762 ---------------KGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCL 826 (1372)
Q Consensus 762 ---------------~~~~~~~~~~~~lk~sWFfFelIvKSMal~~~~~~~~~~~r~~rfp~~~f~d~F~~~i~~Lv~~l 826 (1372)
......+.++...|++|+|++...+||+.+.......+.|+..|+ .+++++++.+++...
T Consensus 411 Pte~~~~~~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~r~-----~~~~~~~~~~~v~~~ 485 (1518)
T KOG1997|consen 411 PTEEDKKIVERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKLRE-----LVSLLDDKTSEVLES 485 (1518)
T ss_pred CcchHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhccc-----chhhhhhhhHHHHHH
Confidence 000122346777899999999999999997665555577887555 478889999988887
Q ss_pred HHHHHhhhccchHHHHHHHhhHHHHHHhhhcccChhHHHHHHHHHHhhccCCC-----cchhhHhHHHHHHHHhcCCccc
Q 000652 827 LTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVC-----QSVLHDCKLIFLQIVCDHDLYV 901 (1372)
Q Consensus 827 ~~~I~~r~~~~~~~a~~lN~slA~Fl~dLlsimDRgfVf~LI~~Y~~~~~~~~-----~~~L~~lKldFLriIcshEhfi 901 (1372)
+.++..+..+..+.+...|.+.|+|++|+++.++++|||.+++.+...+..+- ...+..++++|++|+|.|+|++
T Consensus 486 ~~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~ 565 (1518)
T KOG1997|consen 486 TLKLGFKQIILDHDLEVEMPRRAFSLRNYLSSILIQFVFLSLRHDESPLRAKGARILVILSLLDEFFLRLEILCGHEHIV 565 (1518)
T ss_pred HhhhcccccccHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhhcchh
Confidence 76666666667777889999999999999999999999999999999886432 2468899999999999999999
Q ss_pred ccCCC----------------CC----------------------CCCcccHHHHHHHHHhhccCC---CHHHHHHHHHH
Q 000652 902 EMPGR----------------DP----------------------SDRNYLSSVLIQEVFLTWDHD---DLSQRAKAARI 940 (1372)
Q Consensus 902 ~lp~~----------------~p----------------------~~rHFL~glLl~el~~~L~~e---~~~lr~kAi~~ 940 (1372)
+++.+ .+ ..+|+++|..+.|++..+... ...++.++.+.
T Consensus 566 ~l~lp~~~~~~~~~~~~~s~~~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l~~~~~~~~~~e~~~~~~ils~s~ 645 (1518)
T KOG1997|consen 566 QLNLPFVNQILKEMPVSNSLGATESREVLTGVLKIVRNLDDTSLVKAQQQSIGSTFLEFKLMEEPFEEKKSLDSILSDSN 645 (1518)
T ss_pred hcccccccccchhcccCccccccceeccccchHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHhhccc
Confidence 86210 00 148899999999998887632 24577788888
Q ss_pred HHHHHhhhcCCccCCChhHHHHHHHHHHHHHHHHHhhcccccc-------------------------------------
Q 000652 941 LVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYN------------------------------------- 983 (1372)
Q Consensus 941 L~~LL~kHd~D~Ryq~~~~k~rIA~LYlPLl~illd~~~~l~~------------------------------------- 983 (1372)
.++++++|++||||.+..+|++||.||.|.+..+.++.+.+..
T Consensus 646 ~~~~l~~~a~~pry~~~~~k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l~~~~~~~~~~~g~~~~~va~~~~ 725 (1518)
T KOG1997|consen 646 SRGLLSGHALDPRYVERTSKARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSLDSHELKLRDVNGSMPPEVALQLE 725 (1518)
T ss_pred cccccccCCCCchhhhccccccchhhhhhHHhhhhhcchhhhhhhcccccccccccccchhhhhcccccccChhhhhccC
Confidence 9999999999999999999999999999999999998876531
Q ss_pred -----------------------CChhhHhHHHHHHHHHHHhCChhHHHHHHHhhh-hhHHHHHHHHHHHHhhccccCCc
Q 000652 984 -----------------------LNAVEKREVLIVVMEIVRNLDDASLVKAWQQSI-ARTRLFFKLMEECLILFEHRKPA 1039 (1372)
Q Consensus 984 -----------------------l~~~e~r~LL~CfLwILKn~d~~~Ll~~W~~~~-~~~~~fl~lL~~cl~~FeY~gk~ 1039 (1372)
++.+++|++++|.+||+|+++++.+.+||.+.. .+...++.||+.|+-+|+|.|++
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~ll~l~v~~f~~~~~~ 805 (1518)
T KOG1997|consen 726 GTPLNGYLWQASGKSLPVPSSNYLLREEIRQLLICRLGISKQALRRSLHRIWTQKLELDLENLLALLELCVLVFRYNGKK 805 (1518)
T ss_pred CCCcCCCchhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhcchhhccchhhccChhhHHHHHHHHHHHHhhhhhcchh
Confidence 457899999999999999999998888777765 46889999999999999999998
Q ss_pred ccc----------------ccccCCCCCCCCCCCCCCccc--cCCcCccccccc-------ccHHHHHHHHHhhhhHHHH
Q 000652 1040 DGM----------------LLGASSRSPVGEGPSSPKYSD--RLSPSINNYLSE-------ASRQEVRELWEENLSAAVS 1094 (1372)
Q Consensus 1040 ~~~----------------l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~e~~~~~e~nlstEv~ 1094 (1372)
+.. +.+.+.+.....+.+ .+..+ ++++...+|.+. ...+..+++.++|+|+||.
T Consensus 806 a~~~~~s~~~~k~~~l~~~l~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~t~~~~~~e~~~~~~ls~E~~ 884 (1518)
T KOG1997|consen 806 AASRNISLDFGKLDCLKTRLRGFFSRLIRTRAEM-KRRNEPLRFSKEFFPAFNATFDLHGTKGTTLLEALQATNLSQEVL 884 (1518)
T ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHhhhhcchhh-hhccccchhHHHHHHHhcCCcCCccchhhhhHHHHHHhHHHHHHH
Confidence 431 111111111100000 01111 222332222211 1123557899999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCchhHHHHHHhhhcCCChHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Q 000652 1095 LQVLEITEKFCMMAASHSIATDYGKLDCITAIIMSFFSRNQPVAFWKAFFPVFNRICDLHGATLMARENDRFLKQVAFHL 1174 (1372)
Q Consensus 1095 l~vLd~le~~~~~~~~~~~~~~~~~l~~v~~vll~~L~~~QS~~~l~~~fa~~r~~v~kf~~~Lf~~~~~~~c~~l~~~l 1174 (1372)
++|+|+.+.|++.+.. ....+..+++++++++++|.++||+++++|+||++|+++.|||+++|+.++++ |+.+|.++
T Consensus 885 ~~v~~v~~~~~~~a~~--~~~~~~l~~~~~~~~~~ll~~~~se~~l~h~fA~~r~~~~kfp~l~fe~~~~~-c~~~~~q~ 961 (1518)
T KOG1997|consen 885 LIVLDVAQNLIRLAAY--CDANDSLLGKALRILLNLLKSHQSETVLDHVFATLRLFALKFPDLLFEMDPEQ-CAHMLHQV 961 (1518)
T ss_pred HHHHHHHHHHHHHHhc--cCccHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhHHHHHcCChHH-HHHHHHHH
Confidence 9999999999998774 23334569999999999999999999999999999999999999999888875 99999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhc-cCCCcceehhhhHHHHHhhcccccccccccCCccccchhhHHHHHHHHHHHH
Q 000652 1175 LRLAVFRNVSIRKRAVIGLQILVRSSF-YFMQTARLRVMLTITLSELMSDVQVTQMKSDGTLEESGEARRLRKSLEEMAD 1253 (1372)
Q Consensus 1175 L~~c~S~~~svR~~A~a~LYlLmR~nf-~~~n~srvk~qvt~alS~Lv~~~~~~~~~~~~~f~~~~~~~~lr~SL~~i~~ 1253 (1372)
| ||.|+...+|+ ||+|| .+ +|+++|+||+++.+++.++. + . .+++++++++|++
T Consensus 962 l-~c~ss~~~~r~---------~~~~~~~~---~~~~~q~~~~~~~~~~~~~~--------~---~-~s~~~~~~~~l~~ 1016 (1518)
T KOG1997|consen 962 L-HCESSRLATRQ---------KRNNFEAT---SRTLLQSTISVAAAEAKSVN--------S---L-RSRLLESLRLLLA 1016 (1518)
T ss_pred h-hhhhhhHHHHH---------HHHhcccc---hhhhhhhhhhHHHHHhhhcc--------h---H-HHhhHHHHhhhcC
Confidence 9 99999999988 99999 77 99999999999999997543 1 1 4999999999999
Q ss_pred HhCCccccccCCCchHHHhhcccccccCccchhhhHHHHHHHHHHHHHHHhhhhcCcccccchhhhHHHHHHHHHhhcCC
Q 000652 1254 EARSPSQFRECGLPEDALLAIPEKFTENRWSWSEVKHLSVSLLLALDASLEHSLLGSAMTMDRYAAAESFYKLAMAFAPV 1333 (1372)
Q Consensus 1254 ya~~D~~~~~t~fp~qv~~l~~n~~~~~~~~~~ev~~L~~~vl~~~~~mkeh~~dpe~ml~D~~~~~eL~y~iA~~Y~~s 1333 (1372)
|+++|..|+.|.||+||+||++|+ .+|||++.+||||++||| |++| |||+||+||+++
T Consensus 1017 ~~~~~~~~~~~~f~~~v~dl~~~l---------------~~~l~~t~~mk~h~~d~~-~~~d------l~y~l~~~y~~~ 1074 (1518)
T KOG1997|consen 1017 PEKEDDNRKATAFPEQVKDLLRNL---------------RTVLMATVQMKEHAMDPE-MLAD------LMYQLAKSYANS 1074 (1518)
T ss_pred chhhcchhhhcchHHHHHHHHHHH---------------HHHHHHHHhHHHhhhCHH-HHHH------HHHHHHHhcCCC
Confidence 999999999999998866665543 246888889999999998 8889 999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccChhHHHhhHHHHHHhhhccC
Q 000652 1334 PDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVVMQVH 1372 (1372)
Q Consensus 1334 PdLRltWL~~MA~~H~~~~~~~EAA~C~vh~AaLv~~~~ 1372 (1372)
||||+|||+|||++|.++|||+||||||||+|||||||.
T Consensus 1075 p~Lr~twl~~ma~~h~~~~~~~eaa~c~~~~aali~e~l 1113 (1518)
T KOG1997|consen 1075 PDLRITWLLSMAEIHEKNGNFAEAAQCYVHAAALIAEYL 1113 (1518)
T ss_pred hHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999983
No 2
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=100.00 E-value=8.3e-52 Score=436.72 Aligned_cols=168 Identities=32% Similarity=0.487 Sum_probs=155.1
Q ss_pred ccceEEEEeccceecc----ccceEEEEEEEeCCccccCCccccc-ccCCCCCCCceeEEEEEEecCCCCcccceEEEec
Q 000652 469 LFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAI-HPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 543 (1372)
Q Consensus 469 yrN~LYVYP~~lnFsk----aRNI~V~Vq~r~~D~~~~~~~L~~I-ygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~L 543 (1372)
|||+|||||++++|++ +|||+|+|+||++|++ ..+++|| ||++++ .|+++++|+|+||||+|.|+|||||+|
T Consensus 1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~--~~~l~~i~~g~~~~-~~~~~~~S~V~yHnk~P~f~DEiKi~L 77 (179)
T cd08696 1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDE--SQALPVIFKGSSPE-EFLTEAYTAVTYHNKSPDFYDEIKIKL 77 (179)
T ss_pred CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCC--CccceEEEeCCCCC-ccceeEEEEEEEeCCCCcccceEEEEc
Confidence 8999999999999965 7999999999998764 4688999 777666 699999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeeccccC-CCCCceeEEEEEeccccCCcccc-eeeEEEeecCCccccccc----cccccccccC
Q 000652 544 PAVWTPMHHLLFTFFHVDLQTKL-EAPKPVVIGYAALPLSTHAQLRS-EISLPIIKELVPHYLQET----GKERLDYLED 617 (1372)
Q Consensus 544 P~~L~~~hHLLFTFyHvs~~~K~-~~~~et~vGYAwLPLl~~grL~~-e~~LPV~~~lpp~YL~~~----~~p~~kwvd~ 617 (1372)
|++++++||||||||||||++|+ +++.|++|||||+|||++|+|++ +|+|||++++||+|++.. ..|+++|+||
T Consensus 78 P~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g~L~~g~~~LpV~~~~~p~~~~~~~~~~~~~~~~~~d~ 157 (179)
T cd08696 78 PADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNGRLQSGEFNLPVSLEKPPSNYSPDSPEVKLPGTKWVDN 157 (179)
T ss_pred CCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCCEEecCCEEEEEEecCCCccccccCccccCCccEEeeC
Confidence 99999999999999999999986 56788999999999999999999 999999999999887643 2689999999
Q ss_pred CcceEEEEEEeeccccccchHH
Q 000652 618 GKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 618 ~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
||++|+|++++||||||||+||
T Consensus 158 ~k~~f~v~~~~vSsv~~~d~~l 179 (179)
T cd08696 158 HKGVFSVSVEAVSSVHTQDSYL 179 (179)
T ss_pred CeeEEEEEEEEEeeEeecCCCC
Confidence 9999999999999999999985
No 3
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=100.00 E-value=6.2e-51 Score=431.68 Aligned_cols=169 Identities=30% Similarity=0.493 Sum_probs=153.4
Q ss_pred ccceEEEEeccceec------cccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEEe
Q 000652 469 LFHCLYVYPSSVSLS------RKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVS 542 (1372)
Q Consensus 469 yrN~LYVYP~~lnFs------kaRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~ 542 (1372)
|+|+|||||++++|+ |+|||+|+||||++|++ ..++|+|||+++|++ |+++++|+|+|||++|+|+|||||+
T Consensus 1 y~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~-~~~~l~~I~~g~g~~-~~~~~~s~V~yh~k~P~f~dEiKI~ 78 (185)
T cd08697 1 YKNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEE-DAKPLKCIYYGPGGG-FTTSAYAAVLHHNQNPEFYDEIKIE 78 (185)
T ss_pred CcceEEEcccEEEecccccccccccEEEEEEEEeCCCC-cCccceEEecCCCCC-cceEEEEEEEEcCCCCccceeEEEe
Confidence 799999999999965 58999999999999986 457899999988887 9999999999999999999999999
Q ss_pred cCCCCCCCceEEEEEEEeecccc----CCCCCceeEEEEEecccc-CCcccc-eeeEEEeecCCc---ccccccc-cccc
Q 000652 543 LPAVWTPMHHLLFTFFHVDLQTK----LEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKELVP---HYLQETG-KERL 612 (1372)
Q Consensus 543 LP~~L~~~hHLLFTFyHvs~~~K----~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~~lpp---~YL~~~~-~p~~ 612 (1372)
||++++++||||||||||||+.. ++++.|++|||||||||+ +|+|++ +|+|||++++|| +|++... .|++
T Consensus 79 LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~~~p~~~~~~~~~~~~~~~~ 158 (185)
T cd08697 79 LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVANLLPNYPDGYLSIQPHGPEV 158 (185)
T ss_pred cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEecCCCCCccccccccCCCCc
Confidence 99999999999999999999742 345678999999999999 568888 999999999964 6777655 7899
Q ss_pred ccccCCcceEEEEEEeeccccccchHH
Q 000652 613 DYLEDGKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 613 kwvd~~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
+|+||+|++|+|++++||||||||+||
T Consensus 159 ~~~d~~k~~f~v~~~~vSsv~tqd~~l 185 (185)
T cd08697 159 KWVDGGKPLFKVSTHLVSTVYTQDQHL 185 (185)
T ss_pred EEecCCeeEEEEEEEEEcceecCCCCC
Confidence 999999999999999999999999985
No 4
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=100.00 E-value=5.1e-42 Score=368.72 Aligned_cols=171 Identities=37% Similarity=0.611 Sum_probs=112.2
Q ss_pred CCccccceEEEEeccceec---c--ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceE
Q 000652 465 PFLQLFHCLYVYPSSVSLS---R--KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEI 539 (1372)
Q Consensus 465 P~t~yrN~LYVYP~~lnFs---k--aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEI 539 (1372)
|+++|||+|||||++++|+ + +|||+|+|++|++|+.. .+++|||++.+++.+.++++|+|.||+++|.|+|||
T Consensus 1 ~~~~~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~--~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~dei 78 (184)
T PF14429_consen 1 PPTDYRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNI--KPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEI 78 (184)
T ss_dssp ------EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS----B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEE
T ss_pred CCCceeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCc--cccceEECCCCCCCcceEEEEEEEecCCCCCccEEE
Confidence 7899999999999999994 3 79999999999999743 588999999999789999999999999999999999
Q ss_pred EEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCCccc-c-eeeEEEee------cCCccccccccccc
Q 000652 540 KVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLR-S-EISLPIIK------ELVPHYLQETGKER 611 (1372)
Q Consensus 540 KI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~grL~-~-e~~LPV~~------~lpp~YL~~~~~p~ 611 (1372)
||+||.+++++|||+||||||+|+++++.. ++||||||||+++|+++ + +|+|||++ .+|++||+......
T Consensus 79 Ki~LP~~l~~~~HLlFtf~h~s~~~~~~~~--~~~g~a~lpL~~~g~~i~dg~~~L~v~~~~~~~~~~~~~Yl~~~~~~~ 156 (184)
T PF14429_consen 79 KIQLPPDLFPKHHLLFTFYHVSCKESKEKS--KPFGYAFLPLMDNGTIIQDGEHELPVYKYDKKSKELPSNYLSLPSEAR 156 (184)
T ss_dssp EEEE-CCCCTTEEEEEEEEE---SSSS-SS---EEEEEEEESB-TS-B--SEEEEEEEEE--HHHHT-HHHHTTS--BHH
T ss_pred EEEcCchhcccEEEEEEEEeeccccccCcc--ceeEEEEEEeeeCCeEecCCCEEEEEEEcccccccCchhhccCCcccc
Confidence 999999999999999999999999765432 89999999999999855 4 99999983 45689998765544
Q ss_pred cccccCCcceEEEEEEeeccccccchHH
Q 000652 612 LDYLEDGKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 612 ~kwvd~~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
.+|++++|++|+|++++|||+||||++|
T Consensus 157 ~~~~~~~k~~~~v~t~l~ST~~tqd~~L 184 (184)
T PF14429_consen 157 GKWLDNKKPTFTVRTRLCSTVYTQDPNL 184 (184)
T ss_dssp HTTEEEECEEEEEEEEEE----------
T ss_pred cccccCCCCEEEEEEEEEcCccCCCCCC
Confidence 5899999999999999999999999976
No 5
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=100.00 E-value=3e-38 Score=337.71 Aligned_cols=164 Identities=35% Similarity=0.519 Sum_probs=140.2
Q ss_pred ccceEEEEeccceecc----ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEEecC
Q 000652 469 LFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLP 544 (1372)
Q Consensus 469 yrN~LYVYP~~lnFsk----aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~LP 544 (1372)
|||+|||||++++|++ +|||+|+|++|++|++. ..+|||+ ++...+..++|++|+||+++|.|+|||||+||
T Consensus 1 ~rN~LYi~p~~~~~~~~~~~~rNi~v~v~~r~~d~~~---~~~~i~~-~~~~~~~~s~~~sv~~~~k~p~f~deiKi~LP 76 (178)
T cd08679 1 LRNDLYVYPQSGELSKAKSKGRNIEITVEVRDDDGDI---IEPCISA-PGSGSELRSEYTSVVYYHKNPVFNDEIKIQLP 76 (178)
T ss_pred CCccEEEEeeEEEEcCCCCccccEEEEEEEEcCCCCc---ccccEEE-cCCCCccceeEEEEEEcCCCCCCceeEEEecC
Confidence 6999999999999997 79999999999998753 3368884 22233577888888888899999999999999
Q ss_pred CCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcc-cc-eeeEEEeecC------Cccccccccccccccc
Q 000652 545 AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQL-RS-EISLPIIKEL------VPHYLQETGKERLDYL 615 (1372)
Q Consensus 545 ~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL-~~-e~~LPV~~~l------pp~YL~~~~~p~~kwv 615 (1372)
++++++|||+||||||+|+++++++.+++||||||||++ +|++ .+ +|+|||+++. +++|++ .|..+|.
T Consensus 77 ~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~~~~~~~~~yl~---~~~~~~~ 153 (178)
T cd08679 77 ADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDKRPDVGPSGYLS---LPSTLAN 153 (178)
T ss_pred CccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecCCccccCcccccc---Chhhhcc
Confidence 999999999999999999987555678999999999998 8865 55 9999999986 457876 3566777
Q ss_pred cCCc-ceEEEEEEeeccccccchHH
Q 000652 616 EDGK-NAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 616 d~~K-~~F~V~t~lvSTv~TQD~~L 639 (1372)
++++ +.|+|+|++|||+||||++|
T Consensus 154 ~~~~~~~f~v~t~l~ST~~tqd~~l 178 (178)
T cd08679 154 GKSSKDTFKIKTRLCSTILTQDKSL 178 (178)
T ss_pred cccCCceEEEEEEEEccccccCCCC
Confidence 6664 99999999999999999864
No 6
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=100.00 E-value=4.8e-37 Score=325.59 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=140.5
Q ss_pred ccceEEEEeccceecc-----ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEEec
Q 000652 469 LFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 543 (1372)
Q Consensus 469 yrN~LYVYP~~lnFsk-----aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~L 543 (1372)
.||+|||||.+++|++ +|||+|+|++|+.+| +.|++++++++|+++.++++|.|+|||++|.|+|||||.|
T Consensus 1 vRNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~~G----~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~l 76 (196)
T cd08694 1 VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDG----KIIPGVISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAI 76 (196)
T ss_pred CCccEEEEeeeeEEcCCCCCCcceEEEEEEEECCCC----CCCceeEEcCCCCCcceeEEEEEEeecCCCCCceeEEEec
Confidence 4999999999999986 599999999999876 3587777777788899999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CC-cccc-eeeEEEeecC-------Cccccccc--c---
Q 000652 544 PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HA-QLRS-EISLPIIKEL-------VPHYLQET--G--- 608 (1372)
Q Consensus 544 P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~g-rL~~-e~~LPV~~~l-------pp~YL~~~--~--- 608 (1372)
|++++++|||+|||||+||++++++ .|+||||||+|||+ +| +|.+ +|+|+|||.- +..||+.. .
T Consensus 77 P~~~~~~~HL~FtfrH~S~~~~kd~-~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d~~~~~~~~~~Yl~lP~~~~~~ 155 (196)
T cd08694 77 PIEDFKSSHLRFTFKHRSSNEAKDK-SEKPFALSFVKLMQENGTTLTDGEHDLIVYKVDAKKKLEDAKAYLSLPSTRAEL 155 (196)
T ss_pred ChhhCCCeEEEEEEEeeccccccCC-CCCceEEEEEeeeccCCcEEccCCEEEEEEEeccccccccccceeeCCcchhhc
Confidence 9999999999999999999987764 68999999999996 56 5777 9999999931 24688642 0
Q ss_pred ---cccc-------ccccCCcceEEEEEEeeccccccchHH
Q 000652 609 ---KERL-------DYLEDGKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 609 ---~p~~-------kwvd~~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
++.. ......|+.|.|+|.+|||++|||.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lcSTklTQn~dl 196 (196)
T cd08694 156 EARKSSPSGSASNLGLSLSSKDSFQISTLVCSTKLTQNVDL 196 (196)
T ss_pred cccCCCCcccccccccccCCcceEEEEEEEecceecccCCC
Confidence 1111 133456999999999999999999764
No 7
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=100.00 E-value=6e-37 Score=325.00 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=142.1
Q ss_pred ccceEEEEeccceecc-----ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEEec
Q 000652 469 LFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 543 (1372)
Q Consensus 469 yrN~LYVYP~~lnFsk-----aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~L 543 (1372)
.||+|||||.+++|++ +|||+|+|++|++||+. .-+|||+++|.+. .++++|+|+|||++|.|+|||||.|
T Consensus 1 vRNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G~~---~~~cI~~~~g~~~-~se~~S~V~yH~~~P~W~EtiKi~l 76 (189)
T cd08695 1 VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQV---LKDCISLGSGEPP-CSEYRSFVLYHNNSPRWNETIKLPI 76 (189)
T ss_pred CcccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCCCC---ccCCEEcCCCCCc-cceEEEEEEEcCCCCCCceeEEEec
Confidence 4999999999999996 69999999999998854 2279999988886 7899999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccC-Cccc-c-eeeEEEeecC-------Cccccccc----c-
Q 000652 544 PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH-AQLR-S-EISLPIIKEL-------VPHYLQET----G- 608 (1372)
Q Consensus 544 P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~-grL~-~-e~~LPV~~~l-------pp~YL~~~----~- 608 (1372)
|++++++|||+|||||+||++|++ ++||||||||||++ |+++ + .|.|.||+.. |.+||+.. +
T Consensus 77 P~~~~~~~HL~FtfrH~S~~~k~~---~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d~~~~~~~~~~YL~lp~~~~~~ 153 (189)
T cd08695 77 PIDKFRGSHLRFEFRHCSTKDKGE---KKLFGFSFVPLMREDGTTLPDGSHELYVYKCDENATFLDPALYLGLPCSKEDF 153 (189)
T ss_pred ChhhCCCeeEEEEEEEeeeccCCC---CCceEEEEEeecccCCcEEcCCcEEEEEEeccccccccCccceEECCcccccc
Confidence 999999999999999999998653 58999999999985 6654 5 9999999943 25798642 1
Q ss_pred -----ccccccccCCcceEEEEEEeeccccccchHH
Q 000652 609 -----KERLDYLEDGKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 609 -----~p~~kwvd~~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
.|+.+|..+.|+.|+|+|.+|||++|||.+|
T Consensus 154 ~~~~~~~~~~~~~~~k~~~~I~T~LcSTklTQn~~l 189 (189)
T cd08695 154 QGCPNSPSPLFSRSSKESFWIRTLLCSTKLTQNVDL 189 (189)
T ss_pred cccCCCCccccccCCcceEEEEEEEEcceEeecCCC
Confidence 1344799999999999999999999999764
No 8
>KOG1998 consensus Signaling protein DOCK180 [Signal transduction mechanisms]
Probab=99.92 E-value=6.9e-25 Score=281.21 Aligned_cols=398 Identities=19% Similarity=0.219 Sum_probs=298.5
Q ss_pred ccccceEEEEeccceecc-----ccceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEE
Q 000652 467 LQLFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKV 541 (1372)
Q Consensus 467 t~yrN~LYVYP~~lnFsk-----aRNI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI 541 (1372)
.+.||++||+...++|++ .|||.|+|.+.+.+|. .--.|+.+.+|.+. .+++++-|.||.+.|.|.|-+|+
T Consensus 256 gDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~G~---~l~d~~~~~sG~~~-i~~y~s~v~yh~~~p~w~E~~kv 331 (1548)
T KOG1998|consen 256 GDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVDGK---QLFDKTESGSGEPY-IPEYHSVVLYHQKAPRWTETIKV 331 (1548)
T ss_pred cccccceeeeeeehhhhccccccceeEEEEEEEeecccc---eehhheeccCCCcc-cceeeeeeeeccCCcchhhceee
Confidence 789999999999999986 4999999999998874 22368999988875 88999999999999999999999
Q ss_pred ecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcc-cc-eeeEEEeecCCcc------ccccc-----
Q 000652 542 SLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQL-RS-EISLPIIKELVPH------YLQET----- 607 (1372)
Q Consensus 542 ~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL-~~-e~~LPV~~~lpp~------YL~~~----- 607 (1372)
.||..-+...|+.|.|+|++.+.|.+ +.+.+++++++-+|+ +|+. .+ .|.|-|++..-|+ |+...
T Consensus 332 ~lp~~~~~~~~lR~~frf~ss~dk~~-~~~k~f~~~~v~lmrd~G~~l~dg~h~L~v~k~d~~~~~d~~n~~~~~~~e~~ 410 (1548)
T KOG1998|consen 332 ALPIDDFLDSHLRFLFRHCSTKDKTD-KEKKLFAFAFVKLMRDDGTTLEDGIHDLRVYKCDNPSLEDASNYLKLPSMEAS 410 (1548)
T ss_pred eccchhhhhhhhHHHHHhhccccccC-ccCCceeeeEEEEeccCCccccCCceeEEEEecccchhhhhhhhhhcccchHH
Confidence 99999999999999999998887754 345789999999997 5644 45 9999999975443 33210
Q ss_pred ----c------cc-ccccccCCcceEEEEEEeeccccccchHHHHHHhhhhhccccCCCCChhHHHHHHHhhhcCChHHH
Q 000652 608 ----G------KE-RLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTAL 676 (1372)
Q Consensus 608 ----~------~p-~~kwvd~~K~~F~V~t~lvSTv~TQD~~L~~Ff~~~~~~~~~t~~~~~~eL~~~l~~L~~v~~~~l 676 (1372)
+ .| .....-.+|..|-++++.|||..|||.++..+++|.+. ...+..++.++..++++++
T Consensus 411 ~~~k~~~~q~~s~~s~~~s~s~ke~~~ist~~~st~ltqN~dlL~ll~wr~~---------~e~~~~~L~ql~~v~~eev 481 (1548)
T KOG1998|consen 411 LYDKGMDAQRKSPSSGGFSRSSKEFFFISTLLCSTKLTQNVDLLGLLKWRML---------PELLQDSLMQLANVSGEEL 481 (1548)
T ss_pred HHhccccccccCccccceeeeccccceeeehhhcccccccHHHHHHHHHHhh---------HHHHHHHHHHhcCCChHHH
Confidence 0 01 12233457899999999999999999999999999631 4667889999999999999
Q ss_pred HHhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhcccCcchhhhchhHHhHHhhhccCCCCCCCCCCCCchhHHH
Q 000652 677 LQFLHPVLNMLLHLIGNG--GETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWG 754 (1372)
Q Consensus 677 v~FLp~ILd~Lf~ll~~~--~~~~~~~aF~~Lv~Ii~~v~~~~~d~~~r~~vL~sYI~y~F~~~~~~~~~~y~~L~~~~~ 754 (1372)
++||.+||+.||.++... ++..+..+|.++|.|++.+++. +++| .++++..|++.||.. +.+|.++.++..
T Consensus 482 ~k~l~~iL~~L~~~~~~~~~s~~~~~lVfd~lv~i~~l~~~~-kf~~-~rp~~~~~~~k~fs~-----~l~~~~l~~~l~ 554 (1548)
T KOG1998|consen 482 VKFLQDILDALFVLLEEESQSETYDELVFDVLVSILSLLADR-KFQH-FRPVMNTYIKKHFSA-----TLAYKKLTKVLK 554 (1548)
T ss_pred HHHHHHHHHHHHHhcccccchhhccchhHHHHHHHHHHHHhh-cccc-cccccHHHHHhHHHH-----HHHHhhhHHHHH
Confidence 999999999999999775 4556778999999999998874 3445 469999999999985 455655555544
Q ss_pred HHHhhhhccCccCccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 000652 755 SLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERC 834 (1372)
Q Consensus 755 ~L~rs~~~~~~~~~~~~~~lk~sWFfFelIvKSMal~~~~~~~~~~~r~~rfp~~~f~d~F~~~i~~Lv~~l~~~I~~r~ 834 (1372)
..+....+.. ..-...++++.+.++|.+||.|..+...... ..+++.|......++..+.+.+..-.
T Consensus 555 ~~~~~~~~~~-~~~~~r~~~~~~~~ifkiiV~S~~~~~~~~e------------~~~~~~f~~~~~~lft~~~~~l~~~~ 621 (1548)
T KOG1998|consen 555 VHMDTSISRE-HNEEIREAFKVLEYIFKIIVLSRKLFSRATE------------PSEEEEFRRQLKSLFTKILGGLASQS 621 (1548)
T ss_pred hhhccccccc-ccHHHHHHHHhhhhceEEEEeecccccchhc------------cchhHHHHHHHhhhhhhcchhhhhhh
Confidence 3322221111 1123678899999999999999988755432 12356788888889988888776544
Q ss_pred ccc--hHHHHHHHhhHHHHHHhhh--cccChhHHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhcCCccc
Q 000652 835 KKG--LSLAKRLNSSLGFFCYDLL--SIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYV 901 (1372)
Q Consensus 835 ~~~--~~~a~~lN~slA~Fl~dLl--simDRgfVf~LI~~Y~~~~~~~~~~~L~~lKldFLriIcshEhfi 901 (1372)
... +..+..+-.+.+--.-++. .+.+....+.++-..+..+. +..+..-|+.++..|.+...|-
T Consensus 622 ~n~~ii~~qea~l~~~~~i~~~~~~~~~~~~~el~~~i~~~~~~v~---~~~~~~~kl~~~~kiV~~~lf~ 689 (1548)
T KOG1998|consen 622 KNKEIIRVQEAALKSIPTIDHDLLDELLFDPKELSLLILEFILNVP---EKFLTQQKLNCLKKLVDSRLFS 689 (1548)
T ss_pred hcccccchHHHHHhhcchhhhhhhhhcchhhHHHHHHHHHHhhccc---hhhhhHHHHHHHHHHHHhhhhh
Confidence 333 5555555556655544444 44444444444444444443 2346677888888888766655
No 9
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=99.84 E-value=4.2e-24 Score=270.11 Aligned_cols=949 Identities=13% Similarity=-0.012 Sum_probs=543.8
Q ss_pred CCCCccccCccceEEEEEeeeeeeccccceEEEEEEEeecccccccccccccccCchhh---h------hhhhccCCeEE
Q 000652 148 SETPMSQYGCGLKISVKVLSLSFQAGLVEPFYGTICLYNRERREKLSEDFYFRVLPAEM---Q------DAKISYEPRGI 218 (1372)
Q Consensus 148 p~~p~~~~~~g~ri~vk~l~l~~e~~~iEP~f~s~aLyD~k~~kKISE~F~fdln~~~~---~------~~~~t~~r~aI 218 (1372)
-+.|.++. |+++-|-|........ +++.|.+++-+|.+...++|+.+||| ...+ + -..++.-+++|
T Consensus 59 ~~~~~e~~--~~~~~v~~~~st~~~~-lq~~~t~v~~~d~S~~~~~s~l~~ld--a~sl~nlh~~fv~yl~~sq~~~~~~ 133 (1518)
T KOG1997|consen 59 QTMPVEDA--GIRRPVIFGKSTLREF-LQEPPTTVNYHDKSIEFYESRLLSLD--AKSLAKLHLLFVFYLTSSQQHPGAI 133 (1518)
T ss_pred hhchhhhh--ccchhhhHHHhhhHHH-hccCCcccccccccHHHHhhhhhcCC--chHHHHHHHHHHhhccccccchhhh
Confidence 67888888 9999999988888887 99999999999999999999999999 3322 1 24556668999
Q ss_pred EEeeCCCCCeEEEEEecccccCCCCCCcccccCCCCcchhHHHHhHHHHhhhhCCccccceeeecccccccccccCCCCC
Q 000652 219 FYLDAPSASVCLLIQLERPATEESGVTPSVYSRKEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSA 298 (1372)
Q Consensus 219 FSvt~Ps~dI~LViklEKvLq~~g~i~~~~Y~~ke~~~~~~~~k~~~~~c~RLg~yRmPFAWaa~~Lf~~~~~~~~~~~~ 298 (1372)
+...+|..++.++++-|+++| + ++..+|+..+++.. ..+-+-.+|++.+.+||||+|..++|-....+....+..
T Consensus 134 ~et~~~n~~~~~~i~~el~~q--~-~~~k~~lfn~k~~y--s~mi~~~~~~~~~~~r~~f~~~~~~l~sV~~~D~~~sk~ 208 (1518)
T KOG1997|consen 134 AETPKPNLWLLLLIRHELSLQ--S-DNLKVKLFNCKDRY--SKMIIPVYNSVGTWARGPFNPELIPLSSVHPQDPYLSKF 208 (1518)
T ss_pred hhcccccccchhhHHHHhhhc--c-cCCCccccCCChhh--hhhcccccccccceeccccccccccceecCcCCcccCcc
Confidence 999999999999999999997 3 44445554333322 222222789999999999999999998544322111000
Q ss_pred CC-----CCCCCCCCC-CC----------------CCCCCccccccccccc--CCccccCCcceEEEeccccccc-cc-c
Q 000652 299 SP-----SSPLAPSVS-GS----------------SSHEGVFEPISKITLD--GKLGYSGGSSVIVEISNLNKVK-EC-Y 352 (1372)
Q Consensus 299 ~~-----~~~l~~~~~-~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~k~~-~~-~ 352 (1372)
-. +..-.+.+. ++ ....+..++--++..- .+..--++.|++++.-..+.+. +. .
T Consensus 209 f~~~~~~~~~a~p~~ll~~~~se~~d~~e~~lS~~~~~~g~pEr~~~f~~~~lfav~~l~~~pv~Ia~~e~~l~~n~t~~ 288 (1518)
T KOG1997|consen 209 FTALHSLEQNAFPHRLLTNLLSELPDANELRLSFARTREGIPERLLKFLHQDLFAVVHLHFRPVLIAGIEAVLQGNITES 288 (1518)
T ss_pred eeeeeeccCccchhhhhhhhhhhhccccccccchhhhhccCchhhhhccchhhhhcccccccceEEEeeeeecccccccc
Confidence 00 000000000 00 0001111111111000 0111223456666665555544 11 3
Q ss_pred cccccc--Cc-cc-----ccCCccceeEEEeeeccCCcccccccccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCC
Q 000652 353 TEESLQ--DP-KR-----KVHKPVKGVLRLDIEKHQTAHADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQT 424 (1372)
Q Consensus 353 ~Ed~L~--d~-~r-----~~~k~i~g~l~~~i~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~p~~~~~~~~~ 424 (1372)
+|++++ +. |. |..|++.+.+...+-|++..-.
T Consensus 289 ~e~lik~~h~sK~as~n~k~~~c~~s~ig~Y~~plaw~ar---------------------------------------- 328 (1518)
T KOG1997|consen 289 DEPLIKLSHNSKAASSNLKGSKCTESPIGHYRMPLAWAAR---------------------------------------- 328 (1518)
T ss_pred cchhhccCchhhhhhhhcccccccCCcccceecccccccC----------------------------------------
Confidence 555544 11 11 3334444444444444321110
Q ss_pred CCCCCccCCCCccCCCCCCCCCCCCccccccccccCCCCCCCccccceEEEEeccceecc----ccceEEEEEEEeCCcc
Q 000652 425 SNSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTRNEPFLQLFHCLYVYPSSVSLSR----KRNLFIRVELRKDDAD 500 (1372)
Q Consensus 425 ~~~~~~p~~~k~~~~~~~~~~~~~~~ef~~~ef~~~~~~~P~t~yrN~LYVYP~~lnFsk----aRNI~V~Vq~r~~D~~ 500 (1372)
+++..++.+....-.+-+..+|.....+.++..+.|..|..|..+++.- .+|+.|....+..-.
T Consensus 329 -----------~l~~D~ap~~~~~a~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde~ls~V~~~kll~~t- 396 (1518)
T KOG1997|consen 329 -----------PLPVDGAPPALLDARNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDDLLSMVEFFLLLIVT- 396 (1518)
T ss_pred -----------CCCcCCCCccccccchhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchhhhhhhhhHHHHhhh-
Confidence 0010000001111112345677778888999999999999999998764 588888777775332
Q ss_pred ccCCcc-cccccCCCCC----CCceeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCC---CCCce
Q 000652 501 VRRQPL-EAIHPREPGV----SLQKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLE---APKPV 572 (1372)
Q Consensus 501 ~~~~~L-~~Iygk~~~~----~f~~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~---~~~et 572 (1372)
...+ ..+||.+.+| .+..+..+.+.+|++.+++++++|+.+|+-.-.++|+.||.||.+|+.+.- ...+.
T Consensus 397 --~~~ms~~l~~~sn~Pte~~~~~~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~r~~~~~ 474 (1518)
T KOG1997|consen 397 --PFALSRALYYDSNAPTEEDKKIVERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKLRELVSL 474 (1518)
T ss_pred --hHHHHHHHhccCCCCcchHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhcccchhh
Confidence 1122 5789999888 334456677889999999999999999999999999999999999987642 23568
Q ss_pred eEEEEEeccccCCcccc-eeeEEEeecC--------CccccccccccccccccC--CcceEEEEEEeeccccccchHHHH
Q 000652 573 VIGYAALPLSTHAQLRS-EISLPIIKEL--------VPHYLQETGKERLDYLED--GKNAFKLRLRLCSSLYPINERIRD 641 (1372)
Q Consensus 573 ~vGYAwLPLl~~grL~~-e~~LPV~~~l--------pp~YL~~~~~p~~kwvd~--~K~~F~V~t~lvSTv~TQD~~L~~ 641 (1372)
+++|.|+++...+.+.. ++.|+...+- +++|+.. ..+|... .+-.+..-.-..+.+++-+.-++.
T Consensus 475 ~~~~~~~v~~~~~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~----~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~~~ 550 (1518)
T KOG1997|consen 475 LDDKTSEVLESTLKLGFKQIILDHDLEVEMPRRAFSLRNYLSS----ILIQFVFLSLRHDESPLRAKGARILVILSLLDE 550 (1518)
T ss_pred hhhhhHHHHHHHhhhcccccccHHHHhccccccccchHHHHHH----HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999998877776 7777665542 2345432 2233322 333332223334455555666667
Q ss_pred HHhhhhhccccCC------CCChhHHHHHHHhhhcCChHHHHHhHHHHHHHHHHHHhcCCc------chhHHHH------
Q 000652 642 FFLEYDRHTLRTS------PPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGE------TLQVAAF------ 703 (1372)
Q Consensus 642 Ff~~~~~~~~~t~------~~~~~eL~~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~------~~~~~aF------ 703 (1372)
||.-++....+.. +-.+..+.+... ...+. +....-.+..+.++...+...+. ..+...+
T Consensus 551 ~~~~~~~l~~~~~~~~l~lp~~~~~~~~~~~-~~s~~-~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l~~~~~~ 628 (1518)
T KOG1997|consen 551 FFLRLEILCGHEHIVQLNLPFVNQILKEMPV-SNSLG-ATESREVLTGVLKIVRNLDDTSLVKAQQQSIGSTFLEFKLME 628 (1518)
T ss_pred HHHHHHHHhhhcchhhcccccccccchhccc-Ccccc-ccceeccccchHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHh
Confidence 7766542211100 000011111110 00111 34444556666666666544221 0111112
Q ss_pred H------HHHHHHHhhcccCcchhhhchhHHhHHhhhccCCCCCCCCCCCC---------------------------ch
Q 000652 704 R------AMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPG---------------------------LS 750 (1372)
Q Consensus 704 ~------~Lv~Ii~~v~~~~~d~~~r~~vL~sYI~y~F~~~~~~~~~~y~~---------------------------L~ 750 (1372)
+ .+++|.+-.... +.-++..+.-.|++.--..+. +..|.. +-
T Consensus 629 ~~~~e~~~~~~ils~s~~~--~~l~~~a~~pry~~~~~k~~~---~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l~ 703 (1518)
T KOG1997|consen 629 EPFEEKKSLDSILSDSNSR--GLLSGHALDPRYVERTSKARI---AYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSLD 703 (1518)
T ss_pred hhhhhhHHHHHHhhccccc--cccccCCCCchhhhccccccc---hhhhhhHHhhhhhcchhhhhhhccccccccccccc
Confidence 2 333333321110 111223344445443222110 001100 00
Q ss_pred h---HHH----HHHhhhhccC--------------ccCccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 000652 751 T---VWG----SLARSKAKGY--------------RVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPM 809 (1372)
Q Consensus 751 ~---~~~----~L~rs~~~~~--------------~~~~~~~~~lk~sWFfFelIvKSMal~~~~~~~~~~~r~~rfp~~ 809 (1372)
. .|. +...+.+... ...++ =.+.|+.++.|.++|..++.-....+.++-.+++ .
T Consensus 704 ~~~~~~~~~~g~~~~~va~~~~~~~~~~~~~~~~~~~~~~----~~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~-~ 778 (1518)
T KOG1997|consen 704 SHELKLRDVNGSMPPEVALQLEGTPLNGYLWQASGKSLPV----PSSNYLLREEIRQLLICRLGISKQALRRSLHRIW-T 778 (1518)
T ss_pred chhhhhcccccccChhhhhccCCCCcCCCchhhhcCCCCC----CCcchhhHHHHHHHHHHHHHHHHhcchhhccchh-h
Confidence 0 000 0000000000 01111 1234999999999999876544322333333443 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhhHHHHHHhhhcccChhHHHHHHHHHHhhccCCCcchhhHhHHH
Q 000652 810 QLRDGVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLI 889 (1372)
Q Consensus 810 ~f~d~F~~~i~~Lv~~l~~~I~~r~~~~~~~a~~lN~slA~Fl~dLlsimDRgfVf~LI~~Y~~~~~~~~~~~L~~lKld 889 (1372)
++.. .++..++..+...+..-..++.. +...|.++.++.-+++..++||+++.++..+-+....
T Consensus 779 ~~~~---~~l~~~~~ll~l~v~~f~~~~~~-a~~~~~s~~~~k~~~l~~~l~~~~~~~~~~~~~~~~r------------ 842 (1518)
T KOG1997|consen 779 QKLE---LDLENLLALLELCVLVFRYNGKK-AASRNISLDFGKLDCLKTRLRGFFSRLIRTRAEMKRR------------ 842 (1518)
T ss_pred ccCh---hhHHHHHHHHHHHHhhhhhcchh-hhhHHHhhhhHHHHHHHHHHHHHHHhhhhcchhhhhc------------
Confidence 2222 34444444443333221122333 7899999999999999999999999999888765432
Q ss_pred HHHHHhcCCcccccCCC--CCC--------------------CCcccHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Q 000652 890 FLQIVCDHDLYVEMPGR--DPS--------------------DRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCK 947 (1372)
Q Consensus 890 FLriIcshEhfi~lp~~--~p~--------------------~rHFL~glLl~el~~~L~~e~~~lr~kAi~~L~~LL~k 947 (1372)
+..+-|++++|...+.. .+. ..++.++..+..++.. ...+..++.+++.++.++|..
T Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~e~~~~~~ls~E~~~~v~~v~~~~~~~a~~-~~~~~~l~~~~~~~~~~ll~~ 921 (1518)
T KOG1997|consen 843 NEPLRFSKEFFPAFNATFDLHGTKGTTLLEALQATNLSQEVLLIVLDVAQNLIRLAAY-CDANDSLLGKALRILLNLLKS 921 (1518)
T ss_pred cccchhHHHHHHHhcCCcCCccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-cCccHHHHHHHHHHHHHHccc
Confidence 45556666666654211 110 1222233322222222 223568999999999999999
Q ss_pred hcCCccCCChhHHHHHHHHHHHHHHHHHhhcc------c-cc--------------------------------------
Q 000652 948 HEFDARYQKPEDKLYIAQLYFPLIGQILDEMP------V-FY-------------------------------------- 982 (1372)
Q Consensus 948 Hd~D~Ryq~~~~k~rIA~LYlPLl~illd~~~------~-l~-------------------------------------- 982 (1372)
|+.|.++.+--...|.+.++||.+....+-.. + ++
T Consensus 922 ~~se~~l~h~fA~~r~~~~kfp~l~fe~~~~~c~~~~~q~l~c~ss~~~~r~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 1001 (1518)
T KOG1997|consen 922 HQSETVLDHVFATLRLFALKFPDLLFEMDPEQCAHMLHQVLHCESSRLATRQKRNNFEATSRTLLQSTISVAAAEAKSVN 1001 (1518)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHcCChHHHHHHHHHHhhhhhhhHHHHHHHHhcccchhhhhhhhhhHHHHHhhhcc
Confidence 99999999888888999999997766655110 0 00
Q ss_pred --------------cCChhhHhHHHHHHHHHHHhCChhHHHHHHHhhhhhHH--HHHHHHHHHHhhccccCCcccc----
Q 000652 983 --------------NLNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTR--LFFKLMEECLILFEHRKPADGM---- 1042 (1372)
Q Consensus 983 --------------~l~~~e~r~LL~CfLwILKn~d~~~Ll~~W~~~~~~~~--~fl~lL~~cl~~FeY~gk~~~~---- 1042 (1372)
..+.+..+.+..||.|.+|++-.. ++.|.-+..+++ ..--.+-+|+..+.++|-+...
T Consensus 1002 ~~~s~~~~~~~~l~~~~~~~~~~~~~~f~~~v~dl~~~--l~~~l~~t~~mk~h~~d~~~~~dl~y~l~~~y~~~p~Lr~ 1079 (1518)
T KOG1997|consen 1002 SLRSRLLESLRLLLAPEKEDDNRKATAFPEQVKDLLRN--LRTVLMATVQMKEHAMDPEMLADLMYQLAKSYANSPDLRI 1079 (1518)
T ss_pred hHHHhhHHHHhhhcCchhhcchhhhcchHHHHHHHHHH--HHHHHHHHHhHHHhhhCHHHHHHHHHHHHHhcCCChHHHH
Confidence 023455678999999999999874 667877654332 2222334455556666544221
Q ss_pred -ccccCCCCC-------------------------CCCCCCCC-CccccCCcCcccccccccHHHH-HHHHHhhhhHHHH
Q 000652 1043 -LLGASSRSP-------------------------VGEGPSSP-KYSDRLSPSINNYLSEASRQEV-RELWEENLSAAVS 1094 (1372)
Q Consensus 1043 -l~~~~~~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~-~~~~e~nlstEv~ 1094 (1372)
.+.+|...- .+++...+ +|+.-.....|..-...++.+. ....+|-..||.+
T Consensus 1080 twl~~ma~~h~~~~~~~eaa~c~~~~aali~e~l~~r~~~~~~~~~~~f~~i~~~v~ee~~~~~~~~~~d~~~~~~te~~ 1159 (1518)
T KOG1997|consen 1080 TWLLSMAEIHEKNGNFAEAAQCYVHAAALIAEYLARREGSWLKVGWRAFQKITPNVLEESATKEDAGSPDEEGFHFTEDG 1159 (1518)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhccCcchhhhhccccccCCCCcccccchHHH
Confidence 111111000 00011100 1111000000111001111111 1223344789999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCchhHHHHHHhhhcCCChHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Q 000652 1095 LQVLEITEKFCMMAASHSIATDYGKLDCITAIIMSFFSRNQPVAFWKAFFPVFNRICDLHGATLMARENDRFLKQVAFHL 1174 (1372)
Q Consensus 1095 l~vLd~le~~~~~~~~~~~~~~~~~l~~v~~vll~~L~~~QS~~~l~~~fa~~r~~v~kf~~~Lf~~~~~~~c~~l~~~l 1174 (1372)
|+-++.++...-.. ..-+..+.-|.++++..|..+++-.-|.++++.++..+.|.++..+.. ..|.+.+++|
T Consensus 1160 lv~~l~~~~~~~~~-----aelye~~~~v~kliipv~e~~~~~~~L~~~~~~l~~~~~~i~~~~~~~---kr~~g~yfrv 1231 (1518)
T KOG1997|consen 1160 LVKLLELAAALLSK-----AELYELLAPVYKLIIPVLEKNRSFKKLAKVHALLQRAYDKILEVESSP---KRCFGTYFRV 1231 (1518)
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcccc---ccccceeeeE
Confidence 98665544433221 122445778999999999999999999999999999999999998744 3599999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhc-cCC
Q 000652 1175 LRLAVFRNVSIRKRAVIGLQILVRSSF-YFM 1204 (1372)
Q Consensus 1175 L~~c~S~~~svR~~A~a~LYlLmR~nf-~~~ 1204 (1372)
..+| +..+..+.++-+..+..|++.+ +.+
T Consensus 1232 ~fyg-~~fg~~~~~e~vykep~~t~l~eis~ 1261 (1518)
T KOG1997|consen 1232 GFYG-SKFGELDNKEYVYKEPALTKLAEISL 1261 (1518)
T ss_pred eech-hhcccccchhhhhcchhhcchHHHHH
Confidence 9999 9999999999999999999988 665
No 10
>PF11878 DUF3398: Domain of unknown function (DUF3398); InterPro: IPR021816 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length.
Probab=99.30 E-value=1.2e-12 Score=126.78 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=50.7
Q ss_pred ccccccccccCcCccC-CC--CchHHHHHHhcccceEEEecccCcccCCC-----------CCCccccccc
Q 000652 19 QSLAHLKLDPLIDENL-EQ--WPHLNELVQCYRADWVKDENKYGHYESVS-----------PPSFQNQIFE 75 (1372)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~y~~~w~~~~~~y~~~~~~~-----------~~~~~~q~fe 75 (1372)
.+++.+|++|.+|+|. ++ |+||||||++||+||.+|+|||++||+.+ .++||+|+||
T Consensus 28 ~pRe~RT~~~~vPe~~~~~a~~~~Vreci~~Yt~dW~vV~~ky~~yS~~~~~~~~~~~~~~~k~l~~qvFE 98 (98)
T PF11878_consen 28 IPRECRTVQPSVPEEAEELAEDLFVRECIKSYTSDWHVVNRKYQQYSGSYRPLLPEKRREPEKGLPKQVFE 98 (98)
T ss_pred ccccccccCCCCCchHhhhccChHHHHHHHHhCcCcEEEeeehhhcCccccccCchhhcccccCCcccccC
Confidence 4457789999999995 66 99999999999999999999999999985 2269999998
No 11
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.05 E-value=0.43 Score=49.76 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=56.0
Q ss_pred EEEEEecC-CCCcccceEEEecC-CCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 000652 523 HTQVAVGA-RMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 598 (1372)
Q Consensus 523 ~SsV~yHn-k~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~~ 598 (1372)
.|.+...+ ..|.|.|.+...|+ .+|.....|-|++|.+....+.+... +++|++-+||+. +|.|++ .+.|++...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~-~~lgw~n~~lFd~~~~L~~G~~~L~lW~~ 101 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKK-VPLGWVNLPLFDYRGQLRQGPQKLSLWPD 101 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EE-EEEEEEEEESB-TTSBBEEEEEEEE-EET
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccce-eEEEEEEEEeECCCCcccCCCEEEEEEcC
Confidence 45555555 89999999998886 45777889999999986654332223 899999999995 789998 999999876
Q ss_pred CCc
Q 000652 599 LVP 601 (1372)
Q Consensus 599 lpp 601 (1372)
.++
T Consensus 102 ~~~ 104 (142)
T PF00792_consen 102 EEP 104 (142)
T ss_dssp -TT
T ss_pred CCC
Confidence 543
No 12
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=86.67 E-value=4.6 Score=42.70 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=43.9
Q ss_pred ceeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 519 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 519 ~~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
+..+.|.|.-.+.+|.|.|||.+. .+++-.+|-|+.|+.+-..+ .......||..-+|+-.
T Consensus 38 ~~vaRT~v~~~~~nP~W~E~F~f~---~~~~~~~l~v~v~k~~~~~~-~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 38 TLYARTTSKLKTDTLFWGEHFEFS---NLPPVSVITVNLYRESDKKK-KKDKSQLIGTVNIPVTD 98 (146)
T ss_pred EEEEEEEEEcCCCCCcceeeEEec---CCCcccEEEEEEEEccCccc-cccCCcEEEEEEEEHHH
Confidence 356788999889999999999995 33344689999987542221 11234789999999753
No 13
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=85.79 E-value=4.2 Score=42.36 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=48.4
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
...|.|.-++.+|.|+|+|...+|..--+..-|.|+.+|.+.- ..+..+|-..+++...|
T Consensus 54 ~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~-----~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 54 KSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKM-----KRKEMIGWFSLGLNSSG 113 (138)
T ss_pred eccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCC-----CCCcEEEEEEECCcCCC
Confidence 3467888899999999999999998766677899999997542 13467999999988655
No 14
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=85.55 E-value=5.3 Score=40.73 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=46.4
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
...|.|...+.+|.|+|++.+.++..-.....|.|+.|+-+.. .....+|.+.++|-..|
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~-----~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG-----KSNDYIGGLQLGINAKG 110 (133)
T ss_pred CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC-----CCccEEEEEEEecCCCC
Confidence 3568889999999999999999986544567899999975432 12357999999986544
No 15
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=83.35 E-value=4.8 Score=40.75 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=45.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|...+.+|.|.|++.+.++..-.+..+|.|+.||.+-. .....+|.+.+||-.
T Consensus 52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~ 109 (134)
T cd00276 52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV-----GRNEVIGQVVLGPDS 109 (134)
T ss_pred eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC-----CCCceeEEEEECCCC
Confidence 3456677789999999999999887655678999999986532 134679999999865
No 16
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=79.80 E-value=3.7 Score=43.44 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCcccceEEEecC-CCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 000652 530 ARMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 598 (1372)
Q Consensus 530 nk~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~~ 598 (1372)
..++.|+|-++..++ .+|.....|-||.|.++.... ..+.+||.+-+||+. +|.|+. .+.|.+-..
T Consensus 55 ~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~---~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~ 123 (156)
T cd08380 55 STSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGS---KKEVPLGWVNVPLFDYKGKLRQGMITLNLWPG 123 (156)
T ss_pred CCCCcccceeEccchhhcCChhheEEEEEEEEecCCC---CcceEEEEEeEEeEcccCcEecCCEEEeccCC
Confidence 456889887665443 346778899999999865432 246899999999995 789998 999988754
No 17
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=78.84 E-value=7.5 Score=39.73 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred eEEEEEEec-CCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|... +.+|.|+|++.+.++.. ..+|.|+.|+-+.-. ....+|.+-+||-
T Consensus 34 ~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~-----~dd~iG~~~i~l~ 88 (121)
T cd04016 34 VYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFT-----MDERIAWTHITIP 88 (121)
T ss_pred EEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCc-----CCceEEEEEEECc
Confidence 446778776 68999999999988753 357999999843221 2357999999984
No 18
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=77.32 E-value=12 Score=38.40 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccC
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH 584 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~ 584 (1372)
..|.|.-.+.+|.|.|++.+.+|..-.....|.|+.|+-+.- .....+|...+|+...
T Consensus 53 ~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~-----~~~~~IG~~~l~~~~~ 110 (134)
T cd08403 53 KKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRV-----GHNELIGVCRVGPNAD 110 (134)
T ss_pred ecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCC-----CCCceeEEEEECCCCC
Confidence 456676678999999999999987655667899999985432 1235799999998743
No 19
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=77.03 E-value=7.5 Score=41.66 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCCcccceEEEecCCC---CCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcccc-eeeEEEeecCCccc
Q 000652 531 RMAYYHDEIKVSLPAV---WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKELVPHY 603 (1372)
Q Consensus 531 k~P~F~DEIKI~LP~~---L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~~lpp~Y 603 (1372)
..+.|+|-|+ +|+. |..+..|-||+|.++... .+.+||.+-+||+. +|.|+. .+.|.|.....+.+
T Consensus 58 ~~~~WnEwl~--fpI~i~dLP~~a~L~iti~~~~~~~-----~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~ 128 (159)
T cd08397 58 NRRNWNEWLT--LPIKYSDLPRNSQLAITIWDVSGTG-----KAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADG 128 (159)
T ss_pred CCcccceeEE--cccchhcCChhheEEEEEEEecCCC-----CceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCC
Confidence 4577887644 5644 456889999999986432 45789999999995 789999 99999998766543
No 20
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=75.66 E-value=14 Score=37.98 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=45.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|.-++.+|.|+|++...+|..--++.-|.|+.+|.+-- .....+|-+-+||-
T Consensus 54 k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~-----~~~~~lG~~~i~L~ 110 (128)
T cd08392 54 KRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTL-----KRRVFLGEVLIPLA 110 (128)
T ss_pred eeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCC-----cCcceEEEEEEEcC
Confidence 4568888899999999999999988666678899999985321 12357999999984
No 21
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=75.64 E-value=6.9 Score=39.59 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
.+.|.|..++.+|.|.|++.+.++. ..+|.|+.|+-....+ .....+|.+.+|+-+
T Consensus 34 ~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~---~~d~~lG~~~i~l~~ 89 (123)
T cd08382 34 THSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK---KDQGFLGCVRIRANA 89 (123)
T ss_pred ceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC---CCCceEeEEEEEHHH
Confidence 4567788889999999999999875 5799999998533211 113579999998853
No 22
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=74.68 E-value=7.9 Score=41.38 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=46.5
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCC------CCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAV------WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~------L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
....|.|..++.+|.|+|++++.++.. ..+++.|-|+.||-.---+ ....+|-+.+||-.
T Consensus 41 ~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~----~D~~iG~~~i~L~~ 106 (155)
T cd08690 41 QSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLR----SDKLLGTAQVKLEP 106 (155)
T ss_pred ceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCccc----CCCeeEEEEEEccc
Confidence 456799999999999999999999876 4557889999998632101 23578999998864
No 23
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=74.52 E-value=6 Score=40.30 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=44.7
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|.-++.+|.|+|++.+.+|..--.++.|.|+.||-+-- .+...+|-+-+||-
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~-----~~~~~lG~~~i~l~ 110 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF-----GRNTFLGEVEIPLD 110 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCC-----CCCcEEEEEEEeCC
Confidence 3467888889999999999999987655677899999985432 12357899999985
No 24
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=74.28 E-value=4.5 Score=32.02 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=24.0
Q ss_pred HHHHHHHHHhccChhHHHhhHHHHHHhh
Q 000652 1341 LLHLCDAHQEMQSWAEAAQCAVAVAGVV 1368 (1372)
Q Consensus 1341 L~~MA~~H~~~~~~~EAA~C~vh~AaLv 1368 (1372)
|.+||+.|.+.|+|.+|..||-.+.+|-
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999877664
No 25
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=73.82 E-value=14 Score=38.00 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=45.3
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
..|.|..++.+|.|+|++.+.+|..-..+.+|.|+.|+.+.-. ....+|...+|+-..|
T Consensus 54 ~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~-----~~~~iG~~~i~~~~~~ 112 (136)
T cd08402 54 KKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIG-----KNDPIGKVVLGCNATG 112 (136)
T ss_pred eeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCC-----CCceeEEEEECCccCC
Confidence 4577788899999999999999876555679999999865321 2357999999986433
No 26
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=73.77 E-value=19 Score=38.70 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=48.5
Q ss_pred CCCcccceEEEecC-CCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc-CCcccc-eeeEEEee
Q 000652 531 RMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIK 597 (1372)
Q Consensus 531 k~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~ 597 (1372)
.++.|+|-++..|. .+|....-|-||+|-++.+.+ .+....+||++-++|+. +|.|+. .+.|.+-.
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~-~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~ 121 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKG-AKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP 121 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccC-CCCceEEEEEEEEEEECCCChhhCCCEEEEEEc
Confidence 45889986555433 245667899999999875421 12345799999999995 789998 99998875
No 27
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=73.48 E-value=7.8 Score=42.11 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCCCcccceEEEecCC-CCCCCceEEEEEEEeecccc-----------CCCCCceeEEEEEecccc-CCcccc-eeeEEE
Q 000652 530 ARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTK-----------LEAPKPVVIGYAALPLST-HAQLRS-EISLPI 595 (1372)
Q Consensus 530 nk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K-----------~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV 595 (1372)
+..+.|+|.+...++. +|....-|-|++|-++...+ .....+.+||++=++|+. +|.|+. .+.|.+
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~l 133 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYM 133 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEe
Confidence 4568899877765553 45667899999999864321 111235899999999995 788988 999988
Q ss_pred eecCC
Q 000652 596 IKELV 600 (1372)
Q Consensus 596 ~~~lp 600 (1372)
-...+
T Consensus 134 W~~~~ 138 (173)
T cd08693 134 WTYAE 138 (173)
T ss_pred cCCCc
Confidence 76433
No 28
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=73.36 E-value=15 Score=37.49 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=43.4
Q ss_pred EEEEEEecCCCCcccceEEE-ecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKV-SLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI-~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..|.|..++.+|.|+|++.+ .+|..-.....|.|+.++.+.- .....+|-+.+||-.
T Consensus 54 ~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~-----~~d~~lG~~~i~L~~ 111 (128)
T cd08388 54 VKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY-----SRDDVIGEVVCPLAG 111 (128)
T ss_pred eeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC-----CCCceeEEEEEeccc
Confidence 45778889999999999999 6775544456799999886421 134589999999964
No 29
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=73.10 E-value=9.4 Score=38.64 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=43.0
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCC---CCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVW---TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L---~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|+|++-..+|... .....|-|+.||-+--. ....+|.+.+||-
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-----~d~~iG~~~i~l~ 91 (126)
T cd08682 32 KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-----LDKFLGQVSIPLN 91 (126)
T ss_pred eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-----CCceeEEEEEEHH
Confidence 457889999999999999988888732 24567999999864211 1246999999985
No 30
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=72.87 E-value=12 Score=38.23 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=43.3
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccc-c-CCCCCceeEEEEEecc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQT-K-LEAPKPVVIGYAALPL 581 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~-K-~~~~~et~vGYAwLPL 581 (1372)
..+.|-+..++.+|.|.||+.+.|| ...=|.|+.|+..+.. + .......++|=|.+.|
T Consensus 31 ~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 31 KKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred eeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 4577889999999999999999998 2447999999985432 1 1112346788888877
No 31
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=71.88 E-value=15 Score=37.35 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|++...++..-....-|.|+.|+-+-- .....+|-+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~-----~~~~~iG~~~i~L~~ 111 (125)
T cd08393 54 KRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSL-----GRNSFLGEVEVDLGS 111 (125)
T ss_pred cccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCC-----CCCcEeEEEEEecCc
Confidence 3468889999999999999999886544556799999985321 123579999999854
No 32
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=71.88 E-value=6.7 Score=39.27 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=44.6
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.|..++.+|.|.|++.+.+|..-...+.|.|+.||.+-. .....+|.+-+||-
T Consensus 52 ~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~i~L~ 107 (123)
T cd08390 52 LQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF-----SRHCIIGHVLFPLK 107 (123)
T ss_pred eEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC-----CCCcEEEEEEEecc
Confidence 357788999999999999999987665667899999985321 12367999999985
No 33
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=71.71 E-value=20 Score=39.26 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=47.9
Q ss_pred CCCCcccceEEEecCCC---CCCCceEEEEEEEeeccc-----------cCCCCCceeEEEEEecccc-CCcccc-eeeE
Q 000652 530 ARMAYYHDEIKVSLPAV---WTPMHHLLFTFFHVDLQT-----------KLEAPKPVVIGYAALPLST-HAQLRS-EISL 593 (1372)
Q Consensus 530 nk~P~F~DEIKI~LP~~---L~~~hHLLFTFyHvs~~~-----------K~~~~~et~vGYAwLPLl~-~grL~~-e~~L 593 (1372)
+.+|.|+|- |.+|+. |.....|-|++|-+.-+. ++.+.++.|+|++-++|+. +|.|++ .+.|
T Consensus 56 ~~~~~WnEw--L~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L 133 (178)
T cd08399 56 TEEVLWNTW--LEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVL 133 (178)
T ss_pred CCCcccccc--EECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEE
Confidence 455889886 445644 455789999999884321 1112346899999999995 789999 9999
Q ss_pred EEee
Q 000652 594 PIIK 597 (1372)
Q Consensus 594 PV~~ 597 (1372)
.+-.
T Consensus 134 ~~W~ 137 (178)
T cd08399 134 HMWQ 137 (178)
T ss_pred EEec
Confidence 8866
No 34
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=71.61 E-value=10 Score=37.79 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..+.|.|..++.+|.|.|++.+.++ ....+|.|+.|+-+-. .....+|.+.+||-
T Consensus 37 ~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~~-----~~d~~iG~~~~~l~ 91 (124)
T cd04044 37 ELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFNDK-----RKDKLIGTAEFDLS 91 (124)
T ss_pred cceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCCC-----CCCceeEEEEEEHH
Confidence 3456778889999999999999887 3456899999875322 12367999999974
No 35
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=71.26 E-value=5.2 Score=41.25 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=45.4
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
..|.|..++.+|.|.|++...+|..-.....|.|+.|+-+... ....+|...|..+..|
T Consensus 53 ~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~-----~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 53 KKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKS-----SNDFIGRIVIGQYSSG 111 (135)
T ss_pred EcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCC-----CCcEEEEEEEcCccCC
Confidence 4577888899999999999999876555668999999854322 2357999988877543
No 36
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=71.12 E-value=5.5 Score=40.88 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=45.5
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
..|.|..++.+|.|+|++...+|..-.....|.|+.++.+-.. ....+|...+|+-..|
T Consensus 54 ~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~-----~~~~lG~~~i~~~~~~ 112 (136)
T cd08405 54 KKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLS-----RNDLIGKIYLGWKSGG 112 (136)
T ss_pred ccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCC-----CCcEeEEEEECCccCC
Confidence 4577888999999999999999865445678999999864321 2357999999987654
No 37
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=70.68 E-value=5.7 Score=40.87 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=45.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|.-++.+|.|.|++.+.+|..-.++.+|.|+.|+-+--. ....+|.+.+++..
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~-----~~~~iG~~~~~~~~ 110 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVT-----KNEVIGRLVLGPKA 110 (136)
T ss_pred eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCC-----CCccEEEEEECCcC
Confidence 34577888899999999999999976667789999999854321 23579999999875
No 38
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=70.51 E-value=13 Score=34.52 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=41.9
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..+.|.+...+.+|.|.|++.+.++... ..+|.|+.|+.+... ....+|...+||.
T Consensus 35 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~-----~~~~~G~~~~~l~ 90 (101)
T smart00239 35 EKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG-----RDDFIGQVTIPLS 90 (101)
T ss_pred ceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc-----CCceeEEEEEEHH
Confidence 3456777777779999999988876554 778999988754321 3468999999965
No 39
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=70.26 E-value=5.9 Score=39.69 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=35.4
Q ss_pred cCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 529 GARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 529 Hnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..+||.|+|||.|.+ + ..+-+-+++|..+ +....|||.-|++|-.
T Consensus 41 ~srnd~WnE~F~i~V--d--k~nEiel~VyDk~------~~~~~Pi~llW~~~sd 85 (109)
T cd08689 41 PSRNDRWNEDFEIPV--E--KNNEEEVIVYDKG------GDQPVPVGLLWLRLSD 85 (109)
T ss_pred CCCCCcccceEEEEe--c--CCcEEEEEEEeCC------CCeecceeeehhhHHH
Confidence 469999999999887 2 4678999999741 1245799999999863
No 40
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=70.01 E-value=11 Score=37.85 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=45.3
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..+.|.|..++.+|.|.|++.+.++..-....+|.|+.++-+--- ......+|.+-+||-+
T Consensus 53 ~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~---~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 53 TRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL---SREKKLLGQVLIDLSD 113 (127)
T ss_pred ceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc---CCCCceEEEEEEeccc
Confidence 345688889999999999999999865445678999988753210 0134679999999853
No 41
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=69.19 E-value=10 Score=39.13 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=41.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|+|+|.+.+ ..+.....|.|+.|+-+... ....+|.+.+||-
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~-~~~~~~~~L~v~V~D~d~~s-----~dd~IG~~~i~l~ 115 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGS-VELSPGGKLRFEVWDRDNGW-----DDDLLGTCSVVPE 115 (127)
T ss_pred cccCceecCCCCCcCCCEEEEec-ccCCCCCEEEEEEEeCCCCC-----CCCeeEEEEEEec
Confidence 45677888999999999998863 22335678999999854422 2347999999985
No 42
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=69.07 E-value=26 Score=36.33 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|+|.|...+|..--+..-|.|+.+|.+-.. ....+|-.-++..
T Consensus 52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~-----~~~~lG~v~ig~~ 108 (137)
T cd08409 52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVR-----KSKLLGRVVLGPF 108 (137)
T ss_pred eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCC-----CcceEEEEEECCc
Confidence 34677888999999999999999976666688999999975421 2357888888753
No 43
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=68.72 E-value=11 Score=40.66 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCCcccceEEEecC-CCCCCCceEEEEEEEeecccc----CCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 000652 530 ARMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTK----LEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 598 (1372)
Q Consensus 530 nk~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K----~~~~~et~vGYAwLPLl~-~grL~~-e~~LPV~~~ 598 (1372)
.+++.|+|-+...+. .+|....-|-||.|-++.... +.+..+.++|++-+||+. +|.|+. .+.|.+-..
T Consensus 60 ~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~ 135 (171)
T cd04012 60 FPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPP 135 (171)
T ss_pred cccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccC
Confidence 356789886665444 345567899999999865431 111246899999999996 689998 999988653
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=68.25 E-value=12 Score=37.83 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=43.4
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.|.|...+.+|.|.|++.+.++.......+|.|+.|+-+-.. ....+|.+-+||=
T Consensus 28 ~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~-----~d~~iG~~~~~l~ 83 (127)
T cd08373 28 KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG-----RNRLIGSATVSLQ 83 (127)
T ss_pred eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----CCceEEEEEEEhh
Confidence 5677888899999999999999765567789999999863321 2247899888873
No 45
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=68.23 E-value=6.2 Score=39.68 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=44.0
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
.+.|.|..++.+|.|.|++.+.+|..-..+..|.|+.++-+.- .....+|-+.+||-.
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~-----~~~~~lG~~~i~l~~ 109 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF-----SKHDLIGEVRVPLLT 109 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC-----CCCceeEEEEEecCc
Confidence 3457788899999999999999986444456899999985321 123579999999964
No 46
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=67.66 E-value=8.9 Score=39.36 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=43.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCC--CCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAV--WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~--L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++-+|.|.|++.+.++.. .....+|.|+.|+-+.-. ....+|.+.+||=
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~-----~d~~iG~~~i~l~ 114 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLG-----SNDFEGEAFLPLN 114 (133)
T ss_pred ccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCC-----CCcEeEEEEEeHH
Confidence 45677888999999999999998753 234668999999864321 2357999999984
No 47
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=67.17 E-value=13 Score=39.14 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=59.4
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc---cCCc---ccc-eeeE
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS---THAQ---LRS-EISL 593 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl---~~gr---L~~-e~~L 593 (1372)
.+.|.|..++.+|.|.|++.+.+|-. ..+|-|+.|+-+.-. ....+|.+.++|- ...+ +.. .-.-
T Consensus 34 ~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~~-----~dd~iG~a~i~l~~l~~~~~~~~~~~~~~~~ 105 (145)
T cd04038 34 KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTFS-----KDDSMGEAEIDLEPLVEAAKLDHLRDTPGGT 105 (145)
T ss_pred EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCCC-----CCCEEEEEEEEHHHhhhhhhhhccccCCCCE
Confidence 46788999999999999999999854 568999999854221 2257999998763 2222 222 1122
Q ss_pred EEeecCCc--cccccccccccccccCCcceEEEEEEe
Q 000652 594 PIIKELVP--HYLQETGKERLDYLEDGKNAFKLRLRL 628 (1372)
Q Consensus 594 PV~~~lpp--~YL~~~~~p~~kwvd~~K~~F~V~t~l 628 (1372)
.+.+-+|. ++|.. ...+-|.| ||-+=.+.++|
T Consensus 106 ~~~~~~~~~~~~~~~--~~~~~~~~-g~~~~~~~l~l 139 (145)
T cd04038 106 QIKKVLPSVENCLAS--ESHITWKD-GKIVQDLVLKL 139 (145)
T ss_pred EEEEEecCCCceEec--cceEEEEC-CEEEEEEEEEe
Confidence 33333442 55543 22366765 55444444443
No 48
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=65.46 E-value=17 Score=36.48 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=41.0
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.+...+.+|.|+|++.+.++- ...+|.|+.|+-+-.. ....+|.+-+||-
T Consensus 34 ~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~~~-----~~~~iG~~~~~l~ 87 (121)
T cd04042 34 VYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDRGL-----TDDFMGSAFVDLS 87 (121)
T ss_pred EEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCCCC-----CCcceEEEEEEHH
Confidence 4567788899999999999998763 2468999999853321 2357999999984
No 49
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=64.97 E-value=18 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=43.4
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..+.|.+...+.+|.|.+++.+.++.. ...+|.|.+||.+-.. ....+|-+.+++-.
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~-----~~~~ig~~~~~l~~ 88 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS-----KDDFLGEVEIPLSE 88 (102)
T ss_pred ceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC-----CCceeEEEEEeHHH
Confidence 345566677778999999999999875 5678999999864321 24679999998754
No 50
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=64.64 E-value=18 Score=36.86 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=42.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCCC-CCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAV-WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~-L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|...+.+|.|+|++...+|.. .-+...|.|+.|+-+...+ ...||-+-+||-
T Consensus 39 k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~-----dd~IG~~~l~l~ 96 (120)
T cd08395 39 KFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARD-----DRLVGVTVLQLR 96 (120)
T ss_pred EeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCC-----CCEEEEEEEEHH
Confidence 45677777778999999999999965 3455679999987543211 247999999975
No 51
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=63.92 E-value=21 Score=36.11 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
.+.|.|...+.+|.|.|++.+.++. .+..|.|+.|+-+-.. ....+|.+-+||-.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~~~-----~~~~lG~~~i~l~~ 86 (126)
T cd08678 32 KYQSSTQKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGKKS-----DSKFLGLAIVPFDE 86 (126)
T ss_pred EEEeEEEecCCCCccCceEEEEeCC---CCCEEEEEEEECCCCC-----CCceEEEEEEeHHH
Confidence 4678899999999999999988863 2567999999864321 23578999999853
No 52
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=63.85 E-value=17 Score=35.98 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=42.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCC-CCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|.|++.+.++. ++....+|.|+.|+-+--. ....+|.+-+||-
T Consensus 38 ~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~-----~dd~lG~~~i~l~ 95 (111)
T cd04041 38 LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFT-----ADDRLGRVEIDLK 95 (111)
T ss_pred cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCC-----CCCcceEEEEEHH
Confidence 3568899999999999999987654 3445678999999864321 2246899999874
No 53
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=63.56 E-value=17 Score=36.62 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=42.1
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|.|++.+.++.. ...+|.|+.|+-+-.. ....+|-+-++|-
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~-----~~~~iG~~~i~l~ 91 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG-----KHDLCGRASLKLD 91 (126)
T ss_pred eecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC-----CCceEEEEEEecC
Confidence 35677888899999999999998875 4568999988764321 2357899988873
No 54
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=63.41 E-value=30 Score=34.45 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=43.6
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|.-++.+|.|.|++...+|..-.....|.|+.+|-+-- .....+|-+.+||-.
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~i~l~~ 110 (123)
T cd08521 53 KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRF-----GRNTFLGEVEIPLDS 110 (123)
T ss_pred eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCC-----cCCceeeEEEEeccc
Confidence 3567787789999999999999886544567899998874321 123579999999853
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=63.39 E-value=17 Score=35.99 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=44.0
Q ss_pred eeEEEEEEecCCCCcc-cceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYY-HDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F-~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..+.|.|...+.+|.| .|++.+.+|......-+|.|+.|+-+--. ....+|-+.+||-
T Consensus 32 ~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~-----~~~~iG~~~~~l~ 90 (110)
T cd08688 32 TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS-----ANDAIGKVYIDLN 90 (110)
T ss_pred eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-----CCCceEEEEEeHH
Confidence 4556888888999999 99999999876544558999999854321 2356899999874
No 56
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.86 E-value=29 Score=35.57 Aligned_cols=74 Identities=7% Similarity=0.134 Sum_probs=50.4
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH--HHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000652 1122 CITAIIMSFFSRNQPVAFWKAFFPVFNRICDLHGATLMARENDRFLKQVA--FHLLRLAVFRNVSIRKRAVIGLQILVRS 1199 (1372)
Q Consensus 1122 ~v~~vll~~L~~~QS~~~l~~~fa~~r~~v~kf~~~Lf~~~~~~~c~~l~--~~lL~~c~S~~~svR~~A~a~LYlLmR~ 1199 (1372)
.+++.|..+|........+.-...=+..++.-+|.-- ..+.++- ..|++++++.-+.||.+|--+++-||.+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5677777777555555555544445777888777632 1233332 4689999999999999999999999999
Q ss_pred hc
Q 000652 1200 SF 1201 (1372)
Q Consensus 1200 nf 1201 (1372)
||
T Consensus 117 ~w 118 (119)
T PF11698_consen 117 NW 118 (119)
T ss_dssp S-
T ss_pred cC
Confidence 87
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=61.65 E-value=13 Score=38.05 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=46.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|.|...+|..--.+..|.|+.+|.+-- .....+|-+-++|-+
T Consensus 53 ~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~-----~~~~~lG~~~i~L~~ 110 (124)
T cd08680 53 LFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPD-----QQEECLGGAQISLAD 110 (124)
T ss_pred eEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCC-----CceeEEEEEEEEhhh
Confidence 4568889899999999999999998888888999999996421 123578988888753
No 58
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=61.09 E-value=25 Score=34.94 Aligned_cols=56 Identities=7% Similarity=0.012 Sum_probs=41.1
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|.|++.+.+.... ...-|.|+.|+-+... ....+|-+-+||-
T Consensus 38 ~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~~~-----~dd~IG~~~l~L~ 93 (108)
T cd04039 38 VFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDKFS-----FNDYVATGSLSVQ 93 (108)
T ss_pred eEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCCCC-----CCcceEEEEEEHH
Confidence 457889999999999999988775332 2346889998854321 2357999999984
No 59
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=60.96 E-value=15 Score=36.76 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=44.9
Q ss_pred ceeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 519 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 519 ~~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...+.|.|...+.+|.|.|++.+.++.. ...+|.|++|+.+...+. ......+|.+-+|+-+
T Consensus 38 ~~~~kT~vi~~t~nP~wne~f~f~~~~~--~~~~l~~~V~d~d~~~~~-~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 38 VEIGRTEVIKNNLNPDFVTTFTVDYYFE--EVQKLRFEVYDVDSKSKD-LSDHDFLGEAECTLGE 99 (120)
T ss_pred EEeccEeEeCCCCCCCceEEEEEEEEeE--eeeEEEEEEEEecCCcCC-CCCCcEEEEEEEEHHH
Confidence 3456788999999999999999886643 345899999997542100 1134679999999853
No 60
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=59.59 E-value=33 Score=34.29 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCCcccceEEEec-CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|.|++-+.+ +..-.....|.|+.|+-+.. .....+|.+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l~~ 112 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRD-----GENDFLGEVVIDLAD 112 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCC-----CCCcEeeEEEEeccc
Confidence 34577888999999999998874 42223456899999985322 123579999999854
No 61
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=56.97 E-value=24 Score=35.32 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred eEEEEEEecCC-CCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGAR-MAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk-~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.+..++- +|.|.|++.+.++..- ...|.|++|+-+-. ....+|.+.+||-
T Consensus 43 ~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~d~~~~------~~~~iG~~~~~l~ 97 (128)
T cd00275 43 KFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVYDEDSG------DDDFLGQACLPLD 97 (128)
T ss_pred cEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEEeCCCC------CCcEeEEEEEEhH
Confidence 44566766776 9999999999887322 34788888875321 2356888888884
No 62
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=56.85 E-value=27 Score=35.51 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=41.4
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
....|.|...+-+|.|++++.+.++.. ..+|.|+.|+-+-- .....+|.+.+|+-
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~-----~~~~~iG~~~i~l~ 93 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRL-----TRDDFLGQVEVPLN 93 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCC-----CCCCeeEEEEEEHH
Confidence 355788888899999999999988753 46899998875321 12357999999974
No 63
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=55.95 E-value=28 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=41.3
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.|.|..++.+|.|.+++-+.+|.. ...+|.|+.||-+.. .....+|.+-+|+-
T Consensus 34 ~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~ 87 (115)
T cd04040 34 FKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG-----GKDDLLGSAYIDLS 87 (115)
T ss_pred eeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC-----CCCCceEEEEEEHH
Confidence 5677888899999999999998855 456899998885422 12346899988874
No 64
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=54.75 E-value=37 Score=33.60 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|+|++.+.++.. ...+|-|+.|+-+-. .....+|.+-++|-
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~-----~~~~~iG~~~~~l~ 87 (116)
T cd08376 33 KYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG-----KKDEFIGRCEIDLS 87 (116)
T ss_pred eEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC-----CCCCeEEEEEEeHH
Confidence 35677888999999999999888743 356899998875321 12357999999984
No 65
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=54.54 E-value=1.3e+02 Score=32.05 Aligned_cols=107 Identities=15% Similarity=0.328 Sum_probs=53.7
Q ss_pred ceEEEEeccceecccc---ceEEEEEEEeCCccccCCcccccccCCCCCCCceeEEEEEEecCCCCcccceEEEecCC-C
Q 000652 471 HCLYVYPSSVSLSRKR---NLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPA-V 546 (1372)
Q Consensus 471 N~LYVYP~~lnFskaR---NI~V~Vq~r~~D~~~~~~~L~~Iygk~~~~~f~~~~~SsV~yHnk~P~F~DEIKI~LP~-~ 546 (1372)
..|.|....+.+..+. |=.++|.++|.+|.+...+-.. +-+...+ .++ -.|+-.|.|+-|. +
T Consensus 13 t~l~v~Iekiglkda~~~~~P~~tVSV~D~~G~~ve~~QdT--pv~~~~~-~~y-----------v~f~~~v~lqtple~ 78 (147)
T PF14186_consen 13 TYLSVFIEKIGLKDASQYIDPYFTVSVKDGNGKDVEPPQDT--PVGSRRE-DNY-----------VHFNNTVHLQTPLEK 78 (147)
T ss_dssp -EEEEEEEEEE-TTGGG-EEEEEEEEEE-TTS-BSS--EE----S-SEEE-TTE-----------EEEEEEEE-SS-GGG
T ss_pred ceEEEEEEEEEECChHHccCCeEEEEEECCCCCCccccccC--CCccccc-CCE-----------EEEcccEEEcCCHHH
Confidence 3456666777765554 3468899999887432211110 0001111 112 2244456666664 6
Q ss_pred CCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCCcccc-eeeEEEeec
Q 000652 547 WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS-EISLPIIKE 598 (1372)
Q Consensus 547 L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~grL~~-e~~LPV~~~ 598 (1372)
|.++.=++|+|.|-.-+++ +...-+|||+++ ..+.. ...|++|+.
T Consensus 79 lp~Gaai~fE~kH~K~kk~----k~S~kcw~fme~---dei~~g~~~lely~K 124 (147)
T PF14186_consen 79 LPKGAAIFFEFKHYKPKKK----KTSTKCWAFMEL---DEIKPGPVVLELYKK 124 (147)
T ss_dssp S-TT-EEEEEEEEEETTTT----CEEEEEEEEEEG---GG--SEEEEE--EES
T ss_pred CCCceEEEEEEEeeeccce----eeeeeEEEEEEh---hhccCCceeeehhcC
Confidence 7889999999999754432 234569999998 23444 666777763
No 66
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=54.03 E-value=32 Score=34.95 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=40.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 581 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPL 581 (1372)
.+.|.|..++.+|.|.+++.+.++ +..+|-|+.|+-+-. .....+|.+-++|
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l 86 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL-----KADVLLGEASLDL 86 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC-----CCCcEEEEEEEEH
Confidence 456778888999999999998875 457899998885321 1236799999997
No 67
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=53.77 E-value=22 Score=35.48 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=40.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|...+.+|.|+|++.+.++... ...|.|+.|+-+-. ....+|.+-+||-
T Consensus 36 ~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~------~~~~iG~~~~~l~ 89 (119)
T cd04036 36 KKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV------MDDHLGTVLFDVS 89 (119)
T ss_pred cCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC------CCcccEEEEEEHH
Confidence 346778888999999999999887653 45799999985322 2246899999884
No 68
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=53.63 E-value=17 Score=36.91 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=43.7
Q ss_pred eEEEEEEecCCCCcccceEEEec-CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|.-++.+|.|+|+|...+ |...-...-|.|+.++-+... ....+|-..+||-
T Consensus 50 ~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~-----~~~~lG~~~i~l~ 107 (122)
T cd08381 50 KRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLV-----ENEFLGGVCIPLK 107 (122)
T ss_pred ceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCc-----CCcEEEEEEEecc
Confidence 45677888999999999999998 866556678999999854321 2357899999884
No 69
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=53.44 E-value=38 Score=36.07 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.|.|..++.+|.|+|++.+.++- ...+|.|+.++-+. -+ ...+|-+.+||-
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~~~~---~~~~l~~~V~d~d~---~~---~~~IG~~~i~l~ 123 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIYCAH---YASHVEFTVKDNDV---VG---AQLIGRAYIPVE 123 (158)
T ss_pred eEEEEeCCCCCCccceEEEEEccC---CCCEEEEEEEeCCC---cC---CcEEEEEEEEhH
Confidence 457788889999999999987763 34589998887432 11 257999999974
No 70
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=52.65 E-value=22 Score=35.73 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=43.8
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..|.|..++.+|.|.|++.+.+|..-....+|.|+.++-+-- .....+|.+-+||-.
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~~~~iG~~~i~l~~ 109 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF-----SRDECIGVVELPLAE 109 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC-----CCCceeEEEEEeccc
Confidence 457788899999999999999987655567899999885321 123578999998853
No 71
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=52.14 E-value=30 Score=35.87 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|.|++-+.++- ....+|.|+.|+-+-. .+...+|.+.+||-
T Consensus 48 ~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~~-----~~d~~lG~~~i~l~ 102 (136)
T cd08375 48 EHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDFF-----SPDDFLGRTEIRVA 102 (136)
T ss_pred eeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECCCC-----CCCCeeEEEEEEHH
Confidence 3568889999999999998887753 2346899999875421 12357999999984
No 72
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=51.90 E-value=15 Score=33.29 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=38.2
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEE
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYA 577 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYA 577 (1372)
....|.+..+..+|.|.|++.+.++....+. |.|+.|+..... ....+|.+
T Consensus 34 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~-----~~~~iG~~ 84 (85)
T PF00168_consen 34 TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFG-----KDELIGEV 84 (85)
T ss_dssp EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSS-----SEEEEEEE
T ss_pred eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCC-----CCCEEEEE
Confidence 4467888888999999999999977665554 999999864432 24677764
No 73
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=51.86 E-value=27 Score=35.75 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=47.8
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
....|.|...+.||.|+|++...+|..--++-.|.|+.|+-+--. .-.+||=.-+||-
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs-----~~d~IG~v~l~l~ 104 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS-----RHSTLGELRLKLA 104 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC-----CCceEEEEEEccc
Confidence 345799999999999999999999998888899999999865322 1246899888885
No 74
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=51.84 E-value=43 Score=33.90 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=40.6
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.|.|..++.+|.|.|++-+.+|-. .-+|.|+.||-+-- .....+|..-+||=
T Consensus 36 ~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~-----~~~~~iG~~~i~l~ 88 (121)
T cd08401 36 FRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL-----RRDSVIGKVAIKKE 88 (121)
T ss_pred EEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC-----CCCceEEEEEEEHH
Confidence 5678888999999999999999843 34899998875421 12356999999864
No 75
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=51.70 E-value=32 Score=34.10 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=39.1
Q ss_pred EEEEEEec-CCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.+..+ +.+|.|.|++.+.+|.. ....|.|+.|+-+-. . ...+|.+-+||-
T Consensus 35 ~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-----~-~~~iG~~~~~l~ 88 (118)
T cd08681 35 KKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKR-----K-PDLIGDTEVDLS 88 (118)
T ss_pred cccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCC-----C-CcceEEEEEecH
Confidence 34666655 68999999999998875 456899999984221 1 357999999875
No 76
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=51.69 E-value=20 Score=37.39 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=45.8
Q ss_pred EEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 523 HTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 523 ~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
.|.|..++.+|.|+|++...+|..--+...|.|+.|+-+--. ....+|-..|+....|
T Consensus 55 kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~-----~~~~iG~v~lg~~~~g 112 (136)
T cd08406 55 KTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDG-----KTPNVGHVIIGPAASG 112 (136)
T ss_pred CCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCC-----CCCeeEEEEECCCCCC
Confidence 477888999999999999999987777889999999964321 2346899999876544
No 77
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=51.07 E-value=25 Score=35.24 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCCcccceEEEe-cCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|.+++... ++..-..+.+|.|+.|+-+.. ....+|.+.+||-
T Consensus 53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~------~~~~iG~~~i~l~ 109 (123)
T cd04035 53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF------GNDFLGETRIPLK 109 (123)
T ss_pred ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc------CCeeEEEEEEEcc
Confidence 4567788899999999999984 554333456899999875432 2367999999984
No 78
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=50.82 E-value=39 Score=35.75 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
....|.|..++.+|.|+|+|...++ + .++-|.|+.+|- .... .....+|-+-+||-
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~--l-~~~~L~v~V~~d-~~~~---~~~~~iG~~~i~L~ 122 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS--P-TGKTLQVIVWGD-YGRM---DKKVFMGVAQILLD 122 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc--C-CCCEEEEEEEeC-CCCC---CCCceEEEEEEEcc
Confidence 3556888999999999999999999 3 566788999961 1111 12247899999884
No 79
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=50.66 E-value=27 Score=26.30 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccChhHHHhhHHHHHHh
Q 000652 1339 MWLLHLCDAHQEMQSWAEAAQCAVAVAGV 1367 (1372)
Q Consensus 1339 tWL~~MA~~H~~~~~~~EAA~C~vh~AaL 1367 (1372)
.|+-.||..|.+.|++.||-.|+-.+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47789999999999999999999877665
No 80
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=50.45 E-value=35 Score=33.83 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=40.0
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
+.|.+..++.+|.|.+++.+.++. ...+|.|+.|+-+.. .....+|.+.+||-+
T Consensus 35 ~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~~ 88 (119)
T cd08377 35 LQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDKD-----KKPEFLGKVAIPLLS 88 (119)
T ss_pred eecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCCC-----CCCceeeEEEEEHHH
Confidence 467788889999999999988763 246888888864321 123579999999853
No 81
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=49.59 E-value=46 Score=33.35 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=41.1
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.|.|...+.+|.|.|++.+.++..- ...|.|+.|+-+.. .....+|..-+||-
T Consensus 34 ~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~ 87 (123)
T cd04025 34 LETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV-----SKNDFLGKVVFSIQ 87 (123)
T ss_pred EeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC-----CCCcEeEEEEEEHH
Confidence 45778889999999999999988643 56799998874321 12357899999974
No 82
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=49.41 E-value=28 Score=34.97 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=39.7
Q ss_pred EEEEEec-CCCCcccceEEEecCCCC--CCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 523 HTQVAVG-ARMAYYHDEIKVSLPAVW--TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 523 ~SsV~yH-nk~P~F~DEIKI~LP~~L--~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
.|.|..+ +.+|.|.|++.+.+|... ....+|.|+.|+-.-- .....+|.+.+||-+
T Consensus 36 ~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~ 94 (125)
T cd04051 36 STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS-----LGDKLIGEVRVPLKD 94 (125)
T ss_pred ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-----CCCCcEEEEEEEHHH
Confidence 3455544 689999999999998653 2356899999874211 123579999999853
No 83
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=49.21 E-value=29 Score=34.88 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=42.5
Q ss_pred EEEEEEecCCCCcccceEEEe-cCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..|.|...+.+|.|.|++.+. .|..-.....|.|+.++-+-. .....+|.+-+||-+
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~-----~~~~~iG~~~i~l~~ 110 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF-----SRNDPIGEVSLPLNK 110 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC-----cCCcEeeEEEEeccc
Confidence 568888999999999999986 565444456799999875422 123579999999864
No 84
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=48.76 E-value=37 Score=34.57 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=38.0
Q ss_pred EEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 523 HTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 523 ~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.|.+..++.+|.|+|++.+.++ +...|.|+.|+-+--. ....+|-+.+||-
T Consensus 50 kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~~-----~~~~iG~~~i~l~ 100 (132)
T cd04014 50 KTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAIG-----PDDFVANCTISFE 100 (132)
T ss_pred EEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCCC-----CCceEEEEEEEhH
Confidence 5667778999999999999886 5678999988742211 1246898888873
No 85
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=48.71 E-value=31 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhccChhHHHhhHHHHHHhh
Q 000652 1339 MWLLHLCDAHQEMQSWAEAAQCAVAVAGVV 1368 (1372)
Q Consensus 1339 tWL~~MA~~H~~~~~~~EAA~C~vh~AaLv 1368 (1372)
+.+.|||..+..+|++.||-.++-.+.++-
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 568899999999999999999998877653
No 86
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=46.80 E-value=48 Score=35.28 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=39.8
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.|..++.+|.|+|++.+.+...- ....|.|+.|+-+-- .....+|.+-+||-
T Consensus 48 ~kT~v~~~t~nPvWNE~f~f~v~~p~-~~~~l~~~v~D~d~~-----~~dd~iG~~~l~l~ 102 (151)
T cd04018 48 VKTSVKKNSYNPEWNEQIVFPEMFPP-LCERIKIQIRDWDRV-----GNDDVIGTHFIDLS 102 (151)
T ss_pred eecceEcCCCCCCcceEEEEEeeCCC-cCCEEEEEEEECCCC-----CCCCEEEEEEEeHH
Confidence 35778889999999999998764322 235888988874321 12357999999975
No 87
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=46.65 E-value=51 Score=32.65 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=39.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|++.+.+.++-. ...+|-|+.++-..- ....+|...+||-
T Consensus 26 ~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~------~d~~iG~~~v~L~ 79 (111)
T cd04052 26 VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR------HDPVLGSVSISLN 79 (111)
T ss_pred EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC------CCCeEEEEEecHH
Confidence 35677888899999999998877632 467899998774321 2356899999874
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=46.38 E-value=27 Score=35.45 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCcccceEEEe-cCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
..|.|.-. .+|.|+|+|... ++...-.+.-|.|+.+|-+-- .....+|-+-+||-.
T Consensus 53 ~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~-----~~~~~lG~~~i~L~~ 109 (124)
T cd08389 53 AKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM-----RKERLIGEKVVPLSQ 109 (124)
T ss_pred eecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc-----ccCceEEEEEEeccc
Confidence 45666544 999999999998 776666677899999996431 134579999999853
No 89
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=46.24 E-value=32 Score=36.44 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCC-------------CCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPA-------------VWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~-------------~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|+|...++. .-.+...|.|+.+|-+-- .....+|-+-+||-.
T Consensus 36 ~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-----~~ddfLG~v~i~l~~ 106 (148)
T cd04010 36 TKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-----GGDVFLGEVRIPLRG 106 (148)
T ss_pred ccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC-----CCCceeEEEEEeccc
Confidence 3457788999999999999999852 222346788888875332 123579999999853
No 90
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=43.51 E-value=53 Score=35.59 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=38.2
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 581 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPL 581 (1372)
....|.|.|+|.||+|+||+-..++-. ..+|..|.|.-+.-...+ .+|=|-+||
T Consensus 38 q~lkT~~v~~n~NPeWNe~ltf~v~d~---~~~lkv~VyD~D~fs~dD-----~mG~A~I~l 91 (168)
T KOG1030|consen 38 QKLKTRVVYKNLNPEWNEELTFTVKDP---NTPLKVTVYDKDTFSSDD-----FMGEATIPL 91 (168)
T ss_pred eeeeeeeecCCCCCcccceEEEEecCC---CceEEEEEEeCCCCCccc-----ccceeeecc
Confidence 345577999999999999999888743 347999999865543322 245555554
No 91
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=43.47 E-value=38 Score=34.24 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=42.3
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|.-++.+|.|+|+|...+|.... .+.|.|+.++-+-. ......+|-+-+||-+
T Consensus 49 ~~kT~v~~~t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~~~~----~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 49 RQKTSTVPDSANPLFHETFSFDVNERDY-QKRLLVTVWNKLSK----SRDSGLLGCMSFGVKS 106 (119)
T ss_pred eEeCccccCCCCCccccEEEEEcChHHh-CCEEEEEEECCCCC----cCCCEEEEEEEecHHH
Confidence 4467788889999999999999986543 34688888874321 1123689999999853
No 92
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=42.04 E-value=69 Score=32.24 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=38.8
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 581 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPL 581 (1372)
..|.|...+.+|.|+|++.+.++. ...+|.|+.++-+-- .....+|.+.+++
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~~~~---~~~~l~v~v~d~~~~-----~~d~~iG~~~~~~ 86 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVHLPP---GFHTVSFYVLDEDTL-----SRDDVIGKVSLTR 86 (121)
T ss_pred eeeeeEcCCCCCcccceEEEeeCC---CCCEEEEEEEECCCC-----CCCCEEEEEEEcH
Confidence 467788889999999999998863 236899988874321 1235689998886
No 93
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=40.74 E-value=58 Score=33.04 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=41.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|.-++.+|.|.+++.+.++... ...+|-|+.|+-+.. .....+|-+-+||-
T Consensus 51 ~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~~~-----~~~~~iG~~~~~l~ 106 (131)
T cd04026 51 KQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWDRT-----TRNDFMGSLSFGVS 106 (131)
T ss_pred eecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECCCC-----CCcceeEEEEEeHH
Confidence 356778888999999999999987543 346899999874321 12357888888864
No 94
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=40.37 E-value=60 Score=34.66 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=40.9
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..+.|.|...+.+|.|.|++.+.++-. ....|.|+.|+-+ ...+|.+.+||-
T Consensus 89 ~~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d---------d~~IG~v~i~l~ 140 (153)
T cd08676 89 SIKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD---------DDFLGCVNIPLK 140 (153)
T ss_pred ccEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC---------CCeEEEEEEEHH
Confidence 345678888999999999999988532 4568999999764 247899999874
No 95
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=40.34 E-value=53 Score=33.20 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=41.3
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCC-CCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVW-TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L-~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|+|++.+.++-.- .....|-|+.|+..... .....+|-.-+||-
T Consensus 33 ~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~----~~d~~lG~v~i~l~ 91 (127)
T cd04022 33 KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG----RRRSFLGRVRISGT 91 (127)
T ss_pred EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc----CCCCeeeEEEEcHH
Confidence 356888889999999999999987432 22458999999853211 02356888888874
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=40.25 E-value=1.6e+02 Score=28.79 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=40.0
Q ss_pred eeEEEEEEecCCCCcccceEEEecC-CCCC-CCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLP-AVWT-PMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP-~~L~-~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..+.|.|...+.+|.|. |+.+.+. ..-. ...+|.|+.|+-+... ....+|.+-+||-
T Consensus 38 ~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~-----~d~~iG~~~~~l~ 96 (110)
T cd04047 38 LVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG-----KHDLIGEFETTLD 96 (110)
T ss_pred EEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC-----CCcEEEEEEEEHH
Confidence 45788899999999999 7765542 1112 2579999999754321 2357999999874
No 97
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=40.02 E-value=44 Score=35.01 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=46.4
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccccCC
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 585 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~~g 585 (1372)
...|.|..++.+|.|+|.+...+|...-+..-|.|+.++-+.-. ....+|=.-|++...|
T Consensus 55 kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~-----~~d~iG~v~lg~~~~g 114 (138)
T cd08407 55 KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPG-----QSLPLGRCSLGLHTSG 114 (138)
T ss_pred eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCc-----CcceeceEEecCcCCC
Confidence 44588999999999999999999977666677999999865422 1246888888886544
No 98
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=39.22 E-value=1.9e+02 Score=42.21 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHhhhcCCccCCChhHHHHH-HHHHHHHHHHHHhhccccc-----------cCC
Q 000652 918 LIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYI-AQLYFPLIGQILDEMPVFY-----------NLN 985 (1372)
Q Consensus 918 Ll~el~~~L~~e~~~lr~kAi~~L~~LL~kHd~D~Ryq~~~~k~rI-A~LYlPLl~illd~~~~l~-----------~l~ 985 (1372)
||..+..+...+..+||..|+.+|-.+|..|+- -+.. +-=..| -.+.||++..+-..+.... +-+
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~--~Fs~-~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~ 1424 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH--LFSL-PLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQG 1424 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc--cCCH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 445554444346789999999999999987743 3332 223333 3488899887654322111 001
Q ss_pred hhhHhHHH-HHHHHHHHhCChhHHHHHHHhhhhh-HHHHHHHHHHHHh
Q 000652 986 AVEKREVL-IVVMEIVRNLDDASLVKAWQQSIAR-TRLFFKLMEECLI 1031 (1372)
Q Consensus 986 ~~e~r~LL-~CfLwILKn~d~~~Ll~~W~~~~~~-~~~fl~lL~~cl~ 1031 (1372)
..+...|+ -.+...|+++-+ |.......... +..||+||.-|+.
T Consensus 1425 ~~e~~~Wl~eT~~~AL~~lvd--Lft~fFd~L~~~L~~~l~ll~~ci~ 1470 (1780)
T PLN03076 1425 ELDQDAWLYETCTLALQLVVD--LFVKFYPTVNPLLKKVLMLLVSFIK 1470 (1780)
T ss_pred chhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23566675 778888999975 55555555544 5679999998875
No 99
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=38.88 E-value=87 Score=31.75 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=39.4
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.+..++.+|.|+|++-+.+ .......|.|+.++-+.- .....+|.+.+||-
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~~--~~~~~~~L~~~V~d~d~~-----~~dd~iG~~~i~l~ 89 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELEA--TLPGNSILKISVMDYDLL-----GSDDLIGETVIDLE 89 (124)
T ss_pred ceeeEEECCCCCccceEEEEEe--cCCCCCEEEEEEEECCCC-----CCCceeEEEEEeec
Confidence 3466777899999999988764 334567899999985321 12357999999985
No 100
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=38.03 E-value=59 Score=31.74 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
....|.|..++.+|.|+|++.+.++.. ....|-|+.+.-.- ...+|...+||-
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~v~v~d~~~--------~~~iG~~~i~l~ 84 (105)
T cd04050 32 TTQKSKVKERTNNPVWEEGFTFLVRNP--ENQELEIEVKDDKT--------GKSLGSLTLPLS 84 (105)
T ss_pred EEEeCccccCCCCCcccceEEEEeCCC--CCCEEEEEEEECCC--------CCccEEEEEEHH
Confidence 345677888999999999999998753 23478887775321 245888888874
No 101
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=37.71 E-value=56 Score=33.05 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=39.3
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.|...+.+|.|.|++-+.++.. ...+|-|+.|+-+-. ....+|-+.+||-
T Consensus 30 ~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~------~~~~lG~~~i~l~ 82 (121)
T cd08378 30 GSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA------KDDFLGGVCFDLS 82 (121)
T ss_pred ccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC------cCceeeeEEEEhH
Confidence 4577888899999999999886532 567899999985421 2346788888774
No 102
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=37.52 E-value=81 Score=31.17 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=39.8
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|..++.+|.|.|++.+.++.. ...+|-|+.|+-+.. ....+|.+-+||-
T Consensus 40 ~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~~~~------~~~~iG~~~i~l~ 93 (121)
T cd08391 40 TFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIELFDEDPD------KDDFLGRLSIDLG 93 (121)
T ss_pred eEEccccCCCCCCcccceEEEEeCCC--CCCEEEEEEEecCCC------CCCcEEEEEEEHH
Confidence 45677888899999999998776543 456899998875432 1246888888873
No 103
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=35.99 E-value=88 Score=31.76 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=40.7
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccC------CCCCceeEEEEEecccc
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKL------EAPKPVVIGYAALPLST 583 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~------~~~~et~vGYAwLPLl~ 583 (1372)
..|.+...+.+|.|.|++-+.++. +..+|-|++|+-+...+. .......+|...+||-.
T Consensus 35 ~kT~~v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~ 99 (127)
T cd04027 35 KRTKTIPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT 99 (127)
T ss_pred eecceecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHH
Confidence 457777889999999999887642 245899999986532110 00124578999998753
No 104
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=35.39 E-value=1.3e+02 Score=30.53 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=41.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
.+.|.|...+.+|.|.|++.+.+.- ...+|.|+.|+-+- . ....+|.+-+++-.
T Consensus 36 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~---~---~d~~lG~~~~~l~~ 89 (126)
T cd04046 36 SVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNL---L---CDEFLGQATLSADP 89 (126)
T ss_pred EEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECCC---C---CCCceEEEEEeccc
Confidence 4678899999999999999886642 35689999998431 1 13579999999854
No 105
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=34.64 E-value=1.1e+02 Score=31.96 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=37.1
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|.- ..+|.|+||+...+.- .+.+|.+.++.-+. -....+|.+++||-
T Consensus 32 k~kT~v~~-~~nP~WnE~F~F~~~~---~~~~L~v~V~dkd~------~~DD~lG~v~i~L~ 83 (127)
T cd08394 32 KSTTIAVR-GSQPCWEQDFMFEINR---LDLGLVIELWNKGL------IWDTLVGTVWIPLS 83 (127)
T ss_pred EeEeeECC-CCCCceeeEEEEEEcC---CCCEEEEEEEeCCC------cCCCceEEEEEEhH
Confidence 34566664 4699999999999863 34459998887331 12357999999985
No 106
>PLN03008 Phospholipase D delta
Probab=33.09 E-value=78 Score=42.25 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=37.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 581 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPL 581 (1372)
.+.|.|..++.||.|+|+|.+.++- ...+|.|+.|.-+.- + ..+||-+.+||
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~---g---aD~IG~a~IPL 141 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVF---G---AQIIGTAKIPV 141 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCcc---C---CceeEEEEEEH
Confidence 3468888999999999999999874 234899999863211 1 13566666665
No 107
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=32.09 E-value=1.3e+02 Score=30.20 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=39.7
Q ss_pred EEEEEEec-CCCCcccceEEEecCCCCC-CCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 522 AHTQVAVG-ARMAYYHDEIKVSLPAVWT-PMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 522 ~~SsV~yH-nk~P~F~DEIKI~LP~~L~-~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
..|.+... +.+|.|+|++-+.++..-. ..-+|.|..|+-.-. .....+|.+.+||-
T Consensus 35 ~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-----~~d~~iG~~~i~l~ 92 (124)
T cd04049 35 RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-----SDDDFIGEATIHLK 92 (124)
T ss_pred eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC-----CCCCeEEEEEEEhH
Confidence 45666653 7899999999998886532 345899988875321 12357999999973
No 108
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=32.04 E-value=1.8e+02 Score=30.59 Aligned_cols=57 Identities=5% Similarity=0.051 Sum_probs=38.9
Q ss_pred eeEEEEEEecC-CCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 520 KWAHTQVAVGA-RMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 520 ~~~~SsV~yHn-k~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
+.-.|+|...+ .+|.|+|+|-..+|.++. +-.|.++.|+-+.-.+ ...||=-.|+.-
T Consensus 51 ~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~-----n~~IG~v~lG~~ 108 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRR-----KHFLGQVWISSD 108 (135)
T ss_pred eeecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcC-----CceEEEEEECCc
Confidence 34557788877 469999999999998764 4567777776543211 235777777664
No 109
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=31.49 E-value=1.2e+02 Score=30.43 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=40.2
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|...+.+|.|.+++.+.++. ....+|-|+.|+-+... ....+|-+-+||-
T Consensus 36 ~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~~~-----~~~~lG~~~i~l~ 90 (128)
T cd04024 36 RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDRFA-----GKDYLGEFDIALE 90 (128)
T ss_pred EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCCCC-----CCCcceEEEEEHH
Confidence 3567788889999999999887765 33568999998754221 2246888888873
No 110
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=30.63 E-value=1.2e+02 Score=30.63 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=38.5
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.+.-++.+|.|.+++-+.++.. .-.|.|+.|+-+-.. ....+|.+-+||-
T Consensus 35 ~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~~-----~d~~IG~~~~~l~ 88 (120)
T cd04045 35 KGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKVG-----KDRSLGSVEINVS 88 (120)
T ss_pred eeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCCC-----CCCeeeEEEEeHH
Confidence 34566777899999999998766542 348999988753221 2257999999974
No 111
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=30.01 E-value=1.6e+02 Score=35.15 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccChhHHHhhHHHHHHhhhc
Q 000652 1325 KLAMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGVVMQ 1370 (1372)
Q Consensus 1325 ~iA~~Y~~sPdLRltWL~~MA~~H~~~~~~~EAA~C~vh~AaLv~~ 1370 (1372)
-|++-|.=+|| |+.=|-..|+-..+-|||++||-|+-|--+||..
T Consensus 117 ~L~e~ynf~~e-~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~ 161 (432)
T KOG2758|consen 117 HLQEHYNFTPE-RIETLYKYAKFQYECGNYSGASDYLYFYRALVSD 161 (432)
T ss_pred HHHHhcCCCHH-HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCC
Confidence 37889999998 6777889999999999999999999999998864
No 112
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=28.06 E-value=1.8e+02 Score=30.40 Aligned_cols=56 Identities=7% Similarity=0.019 Sum_probs=40.8
Q ss_pred eEEEEEEecCCCCcc-cceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYY-HDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F-~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
.+.|.|...+.+|.| .|++...++. +.+|.|+.|+-....+. .....+|..-+||-
T Consensus 46 ~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v~V~D~~~~~~~--~~~d~lG~~~i~l~ 102 (137)
T cd08691 46 ECRTSIVENTINPVWHREQFVFVGLP----TDVLEIEVKDKFAKSRP--IIRRFLGKLSIPVQ 102 (137)
T ss_pred eeeeeeEcCCCCCceEceEEEEEcCC----CCEEEEEEEecCCCCCc--cCCceEEEEEEEHH
Confidence 567888888999999 9999998863 34899999874221111 11367999999974
No 113
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=27.99 E-value=1e+02 Score=30.39 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=39.7
Q ss_pred eEEEEEEecCCCCcccceEEEec--CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSL--PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~L--P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.+..++.+|.|.|++...+ |..-..+.+|-|+.|+-..-. ....+|-.-+||-
T Consensus 33 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~-----~~~~iG~~~i~l~ 91 (111)
T cd04011 33 KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR-----SDTLIGSFKLDVG 91 (111)
T ss_pred eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc-----cCCccEEEEECCc
Confidence 34688888899999999998764 433233568999999753211 1356888888874
No 114
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.59 E-value=1e+02 Score=30.37 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=33.2
Q ss_pred HHHHHhhhcCChHHHHHhHHHHHHHHHHHHhcCCcchhHHH
Q 000652 662 LEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAA 702 (1372)
Q Consensus 662 ~~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~~~~~~a 702 (1372)
++++-++.++-..+++.+++.|++.|+.++....+.|...|
T Consensus 48 cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 48 CEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 56777777777789999999999999999988766665554
No 115
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=27.17 E-value=7.9e+02 Score=29.40 Aligned_cols=79 Identities=15% Similarity=0.313 Sum_probs=49.8
Q ss_pred HHHHHHHhcC--CcccccCCCCCCCCcccHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhcCCccCCChhHHHHHHH
Q 000652 888 LIFLQIVCDH--DLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQ 965 (1372)
Q Consensus 888 ldFLriIcsh--Ehfi~lp~~~p~~rHFL~glLl~el~~~L~~e~~~lr~kAi~~L~~LL~kHd~D~Ryq~~~~k~rIA~ 965 (1372)
+.+|+-++.| +-+..+|. + ...+++.-+.-++.|..+++...++.+|.+++.+..- -.....++-..+
T Consensus 141 f~LL~~i~~~~f~~l~~lp~----~---~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~---~~~~~~~~F~~~ 210 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPP----E---QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK---TNPEFANQFYQQ 210 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-H----H---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCH----H---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence 4566666653 33333332 1 2345667777788888999999999999999998876 222334455556
Q ss_pred HHHHHHHHHHh
Q 000652 966 LYFPLIGQILD 976 (1372)
Q Consensus 966 LYlPLl~illd 976 (1372)
-|++++.-++.
T Consensus 211 y~~~il~~if~ 221 (319)
T PF08767_consen 211 YYLDILQDIFS 221 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66665555443
No 116
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=24.16 E-value=2.3e+02 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=27.8
Q ss_pred EEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEE
Q 000652 522 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFH 559 (1372)
Q Consensus 522 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyH 559 (1372)
+.|.+.-+ .+|.|.|++.+.+|........|-|..++
T Consensus 32 ~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d 68 (117)
T cd08383 32 ARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKD 68 (117)
T ss_pred EecceEEC-CCCcccceEEEecCCccccEEEEEEEEEe
Confidence 56777778 99999999999998654445566666555
No 117
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=23.97 E-value=1e+02 Score=33.08 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=40.9
Q ss_pred eEEEEEEecCCCCcccceEEEec-CCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|.|++.+.+ +..-.....|.|+.|+-+.- .....+|-..++|-
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~-----~~d~~lG~v~i~l~ 122 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKL-----SSNDFLGGVRLGLG 122 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCC-----CCCceEEEEEEeCC
Confidence 35688999999999999999874 33222345799999985432 12357899888874
No 118
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=23.10 E-value=1.9e+02 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=41.0
Q ss_pred eEEEEEEecCCCCcccceEEEecCCCC-------------CCCceEEEEEEEeeccccCCCCCceeEEEEEeccc
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVW-------------TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 582 (1372)
Q Consensus 521 ~~~SsV~yHnk~P~F~DEIKI~LP~~L-------------~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl 582 (1372)
...|.|..++.+|.|+|++.+.++..- -.+.-|.|+.|+-+-. .....+|-..+||-
T Consensus 35 ~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~-----~~~~~IG~~~i~l~ 104 (137)
T cd08675 35 TKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV-----SGDDFLGEVRIPLQ 104 (137)
T ss_pred eeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcC-----cCCcEEEEEEEehh
Confidence 456778888999999999999887642 1455777887764321 12467899999864
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=22.12 E-value=1.2e+02 Score=39.47 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=27.2
Q ss_pred eeEEEEEEecCCCCcccceEEEecCCCCCCCceEEEEEEEe
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHV 560 (1372)
Q Consensus 520 ~~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHv 560 (1372)
....|.|..+|-+|.|.||+...+. ..+-.-|.|..+.-
T Consensus 513 ~~~kTkvi~nN~nPvWnE~F~F~i~--~PELAllrf~V~D~ 551 (599)
T PLN02952 513 AKKKTKIIEDNWYPAWNEEFSFPLT--VPELALLRIEVREY 551 (599)
T ss_pred cceeeeeccCCCCcccCCeeEEEEE--cCCccEEEEEEEec
Confidence 3446778888899999999886544 33445677777653
No 120
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=21.87 E-value=89 Score=45.77 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred EEEEEecCCCCcccceEE--EecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc---CCcccceee
Q 000652 523 HTQVAVGARMAYYHDEIK--VSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST---HAQLRSEIS 592 (1372)
Q Consensus 523 ~SsV~yHnk~P~F~DEIK--I~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~---~grL~~e~~ 592 (1372)
.|-|..+|.+|.|+||+- ++-|. .+..|.|+.|.-+.- +++ .+|++-++|-+ +|++...|.
T Consensus 2014 kTkvvk~~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d~f-----~kd-~~G~~~i~l~~vv~~~~~~~~~~ 2079 (2102)
T PLN03200 2014 QTKVVSHSSSPEWKEGFTWAFDSPP---KGQKLHISCKSKNTF-----GKS-SLGKVTIQIDRVVMEGTYSGEYS 2079 (2102)
T ss_pred cccccCCCCCCCcccceeeeecCCC---CCCceEEEEEecCcc-----CCC-CCceEEEEHHHHhcCceeeeeee
Confidence 578999999999999999 67773 334577887765432 122 59999999853 555444444
No 121
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=21.82 E-value=2e+02 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhccChhHHHhhHHH
Q 000652 1318 AAAESFYKLAMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVA 1363 (1372)
Q Consensus 1318 ~~~eL~y~iA~~Y~~sPdLRltWL~~MA~~H~~~~~~~EAA~C~vh 1363 (1372)
.|.++.=++..-+.++++.+. .||..+.+.|++.||..++-.
T Consensus 9 ~A~~~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 9 EAIELLEKALQRNPDNPEARL----LLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHHHTTTSHHHHH----HHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 345555555566666666655 589999999999999887643
No 122
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=21.52 E-value=1.1e+02 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHhccChhHHHhhHHHHHH
Q 000652 1342 LHLCDAHQEMQSWAEAAQCAVAVAG 1366 (1372)
Q Consensus 1342 ~~MA~~H~~~~~~~EAA~C~vh~Aa 1366 (1372)
.++|..+.+.|++.+|..|+-.+..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4788999999999999999976654
No 123
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=21.42 E-value=1.8e+02 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000652 1173 HLLRLAVFRNVSIRKRAVIGLQILVR 1198 (1372)
Q Consensus 1173 ~lL~~c~S~~~svR~~A~a~LYlLmR 1198 (1372)
.++++++.....||..|+-+|--+++
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999877665
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=21.36 E-value=1.9e+02 Score=24.73 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=35.1
Q ss_pred HHHHhhhcCChHHHHHhHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 000652 663 EAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVN 708 (1372)
Q Consensus 663 ~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~~~~~~aF~~Lv~ 708 (1372)
..|..+.......+-.++|.++..|+.++.+..+.|...|..+|-.
T Consensus 9 ~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 9 WALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 3455555667788899999999999999987766776677766643
No 125
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=21.05 E-value=1.6e+02 Score=26.62 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=30.4
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhccChhHHHhhHHHHHHh
Q 000652 1327 AMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGV 1367 (1372)
Q Consensus 1327 A~~Y~~sPdLRltWL~~MA~~H~~~~~~~EAA~C~vh~AaL 1367 (1372)
.+.+.+....-.+++.+||..+...|++.||-.++-.+..+
T Consensus 35 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 35 EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444333334788999999999999999999988665543
No 126
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=20.91 E-value=2.4e+02 Score=29.79 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred eEEEEEEec-CCCCcccceEEEecCCCCCCCceEEEEEEEeeccccCCCCCceeEEEEEecccc
Q 000652 521 WAHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.+.-. +.+|.|+|++.+.++... ..+|.|++++-.-- .....+|..-+||-.
T Consensus 33 ~~kTk~~~~~t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~~-----~~dd~lG~v~i~L~~ 89 (150)
T cd04019 33 VLRTRPSQTRNGNPSWNEELMFVAAEPF--EDHLILSVEDRVGP-----NKDEPLGRAVIPLND 89 (150)
T ss_pred EeeeEeccCCCCCCcccCcEEEEecCcc--CCeEEEEEEEecCC-----CCCCeEEEEEEEHHH
Confidence 345666544 589999999999886432 25898998864321 122579999999853
No 127
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=20.18 E-value=2.4e+02 Score=30.56 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=54.1
Q ss_pred hhHHHHHHhhhcccChhHHH---------HHHHHHHhhccCCCcchhhHhHHHHHHHHhcC--CcccccCCCCCCCCccc
Q 000652 846 SSLGFFCYDLLSIIEPRQVF---------ELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDH--DLYVEMPGRDPSDRNYL 914 (1372)
Q Consensus 846 ~slA~Fl~dLlsimDRgfVf---------~LI~~Y~~~~~~~~~~~L~~lKldFLriIcsh--Ehfi~lp~~~p~~rHFL 914 (1372)
..+|+.|.-+..+||.|.|. +=|..|++ .+..+...+ +.=+..|.-++.. ..|-.. .+.--
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn-~~~~d~~i~-q~sLaILEs~Vl~S~~ly~~V------~~evt 103 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN-SSAMDASIL-QRSLAILESIVLNSPKLYQLV------EQEVT 103 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc-cccccchHH-HHHHHHHHHHHhCCHHHHHHH------hccCC
Confidence 34788888888899988633 22344554 122233332 3334455444432 222211 11222
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhcCCcc
Q 000652 915 SSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDAR 953 (1372)
Q Consensus 915 ~glLl~el~~~L~~e~~~lr~kAi~~L~~LL~kHd~D~R 953 (1372)
.+-| ...|+..+++++..|+..+..|+.|-+-+.|
T Consensus 104 ~~~L----i~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 104 LESL----IRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHH----HHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 2333 3445556789999999999999998765444
Done!