Query 000652
Match_columns 1372
No_of_seqs 280 out of 455
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:58:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000652.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_422-426//hhsearch_pdb/000652hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4c_A Dedicator of cytokinesi 1.0 1 1 317.0 14.0 173 461-639 18-220 (220)
2 2yin_A DOCK2, dedicator of cyt 1.0 1 1 98.7 3.3 18 815-832 412-429 (436)
3 1wfm_A Synaptotagmin XIII; C2 1.0 1 1 26.0 5.3 59 520-583 59-117 (138)
4 3f04_A Synaptotagmin-1; C2A, c 1.0 1 1 25.8 2.9 58 521-583 70-127 (143)
5 1rsy_A Synaptotagmin I; calciu 1.0 1 1 25.3 2.6 58 521-583 78-135 (152)
6 2enp_A B/K protein; C2 type 1, 1.0 1 1 24.5 0.8 58 521-583 69-126 (147)
7 2z0u_A WW domain-containing pr 1.0 1 1 24.4 2.1 58 521-583 82-139 (155)
8 2dmg_A KIAA1228 protein; beta- 1.0 1 1 24.1 1.0 61 520-583 60-120 (142)
9 2chd_A Rabphilin-3A, exophilin 1.0 1 1 23.6 3.3 60 519-583 65-125 (142)
10 1tjx_A Similar to synaptotagmi 1.0 1 1 23.5 4.2 59 520-583 62-120 (159)
No 1
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=1.00 E-value=1 Score=316.97 Aligned_cols=173 Identities=20% Similarity=0.243 Sum_probs=142.5
Q ss_pred CCCCCCCCCCCEEEEEECCCEECC-----CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 777897443112799712310046-----665389999991886324776311025888887740389899865888754
Q 000652 461 TRNEPFLQLFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYY 535 (1372)
Q Consensus 461 ~~~~P~t~yrN~LYVYP~~lnFsk-----~RNI~V~Velr~~D~~~~~~~L~~Iygk~~~~~f~~~~~S~V~yHnk~P~F 535 (1372)
++..| .++||+|||||.+++|++ +|||+|+||+|++||+ ...+|||+++|.+ +.++++|+|+|||++|.|
T Consensus 18 evI~P-gd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~---~i~~~I~~~sg~~-~~se~~S~V~YHnk~P~w 92 (220)
T 3l4c_A 18 GSHMP-GDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGK---RLEHVIFPGAGDE-AISEYKSVIYYQVKQPRW 92 (220)
T ss_dssp ---------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSC---BCCSCEECTTCCS-CBSCEECCCCTTCSSCCC
T ss_pred CCCCC-CCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCC---CCCCCEECCCCCC-CCEEEEEEEEECCCCCCC
T ss_conf 45169-987664798830757789998875428999999959998---7002798279998-760289799985799985
Q ss_pred CCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCC-CC-CCC-EEEEEEEECC-----C-CCCCCC
Q ss_conf 6127772379989995299999972125557999822579998223468-83-331-0357785217-----9-653454
Q 000652 536 HDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH-AQ-LRS-EISLPIIKEL-----V-PHYLQE 606 (1372)
Q Consensus 536 ~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~~-gr-L~~-e~~LPV~~~l-----p-p~YL~~ 606 (1372)
+|||||+||++++++|||+||||||||++|++ +.|++|||||+|||++ |+ |++ +|+|+||+.- . ..||..
T Consensus 93 ~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~d-k~E~pfg~a~lPL~~~dG~~L~DG~H~L~vyk~d~~~~~~~~~yl~l 171 (220)
T 3l4c_A 93 FETVKVAIPIEDVNRSHLRFTFRHRSSQDSKD-KSEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSL 171 (220)
T ss_dssp CEEEEEEECTTSSTTEEEEEEEEECCCCSSCC-CCCCEEEEEEEESBCTTSCBCCSEEEEEEEEECCHHHHTCHHHHTTS
T ss_pred EEEEEEEECHHHCCCEEEEEEEEEECCCCCCC-CCCCEEEEEEEECCCCCCCEECCCCEEEEEEECCCCCCCCHHHHCCC
T ss_conf 07599950701267817999999730453455-66780289999732578858754988888997454566563330258
Q ss_pred CC-------C---C------CCCCCCCCCCEEEEEEEEECCCCCCCHHH
Q ss_conf 66-------4---6------65422389662999987513434551489
Q 000652 607 TG-------K---E------RLDYLEDGKNAFKLRLRLCSSLYPINERI 639 (1372)
Q Consensus 607 ~~-------~---p------~~kwvd~~K~~F~V~t~lvSTv~TQD~~L 639 (1372)
.. + + ........|+.|.|+|.+|||++|||..|
T Consensus 172 p~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lCSTkLTQNvdl 220 (220)
T 3l4c_A 172 PSTKAELEEKGHSATGKSMQSLGSCTISKDSFQISTLVCSTKLTQNVDL 220 (220)
T ss_dssp CCBHHHHHTC-------CCCEETTEEEEEEEEEEEEEEC----------
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 8742231235665666643346666787676999958874511457899
No 2
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=1.00 E-value=1 Score=98.71 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996
Q 000652 815 VFRCVMQLYDCLLTEVHE 832 (1372)
Q Consensus 815 F~~~I~~Lv~~l~~~I~~ 832 (1372)
|++.+...+..+...|-.
T Consensus 412 ~h~~L~~~f~~l~~~le~ 429 (436)
T 2yin_A 412 FHDRMEECFKNLKMKVEK 429 (436)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 3
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=45.6
Q ss_pred EEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 0389899865888754612777237998999529999997212555799982257999822346
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
....|.|...+.+|.|+|++...+|..-.....|.|+.|+.+--. ....+|.+.+||-.
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~dd~lG~~~i~l~~ 117 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS-----RHSVAGELRLGLDG 117 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC-----TTSCSEEEEEESSS
T ss_pred CCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCC-----CCCEEEEEEEECCC
T ss_conf 528065381899981885599986499938788999999899888-----89578999997432
No 4
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=1.00 E-value=1 Score=25.79 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=43.7
Q ss_pred EEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 389899865888754612777237998999529999997212555799982257999822346
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|++...+|..-..+..|.|+.|+.+.- .....+|.+.+||-.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~-----~~~~~iG~~~i~l~~ 127 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF-----SKHDIIGEFKVPMNT 127 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS-----SCCEEEEEEEEEGGG
T ss_pred CEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCC-----CCCCEEEEEEEEHHH
T ss_conf 5788658389999276759996067663887899999968988-----889558999998788
No 5
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=43.3
Q ss_pred EEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 389899865888754612777237998999529999997212555799982257999822346
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|++...++..-.....|.|+.|+-+.- .....+|.+.+||-.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~-----~~~~~iG~~~i~l~~ 135 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF-----SKHDIIGEFKVPMNT 135 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS-----SCCEEEEEEEEEGGG
T ss_pred EEECCCCCCCCCCCCCCCEEEEECHHHCCCCEEEEEEEECCCC-----CCCCEEEEEEEECHH
T ss_conf 5833651799998386538975068994888899999989999-----899688989997135
No 6
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.51 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=42.0
Q ss_pred EEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 389899865888754612777237998999529999997212555799982257999822346
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|..++.+|.|+|++.+.++..-.....|.|+.|+-+.- .....+|-+.+||-.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~-----~~~~~iG~~~i~l~~ 126 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKF-----SRHCVIGKVSVPLCE 126 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTT-----CCSCCCEEEEEETTT
T ss_pred CEEEECCCCCCCCEEEEEEEEEECHHHHCCCEEEEEEEECCCC-----CCCCEEEEEEEECHH
T ss_conf 3381012499998074469997576774667899999989987-----678678989982136
No 7
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=24.40 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=44.1
Q ss_pred EEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 389899865888754612777237998999529999997212555799982257999822346
Q 000652 521 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 521 ~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
...|.|...+.+|.|+|++...+|..--....|.|+.|+-+.. .....+|-+.+||-.
T Consensus 82 ~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~-----~~~d~iG~~~i~l~~ 139 (155)
T 2z0u_A 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRS-----HLEECLGGAQISLAE 139 (155)
T ss_dssp EEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTT-----SCEEEEEEEEEECTT
T ss_pred CEECCCCCCCCCCCCCCEEEEECCHHHHCCCEEEEEEEECCCC-----CCCCEEEEEEEEHHH
T ss_conf 2467769899998534179998298995758799999978999-----777689999997777
No 8
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.09 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=43.0
Q ss_pred EEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 0389899865888754612777237998999529999997212555799982257999822346
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
....|.|..++.+|.|+|++.+.+|..-.....|.|+.|+-+.-.+ .....+|.+.+||-.
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~---~~~~~iG~~~i~l~~ 120 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLS---KDKGLLGKVLVALAS 120 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSC---CSCCCCEEEEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECHHHHCCCEEEEEEEECCCCCC---CCCCEEEEEEEECCC
T ss_conf 7400885379999970734999726899386789999997998635---688688999984550
No 9
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=1.00 E-value=1 Score=23.59 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=43.9
Q ss_pred CEEEEEEEEECCCCCCCCCEEEEE-CCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 403898998658887546127772-37998999529999997212555799982257999822346
Q 000652 519 QKWAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 519 ~~~~~S~V~yHnk~P~F~DEIKI~-LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
...+.|.|..++.+|.|+|++... +|..-.....|.|+.|+-+.- .....+|.+.+||-.
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~-----~~d~~iG~~~i~l~~ 125 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF-----GHNEFIGETRFSLKK 125 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTT-----SCEEEEEEEEEEGGG
T ss_pred CCEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCEEEEEEEECCCC-----CCCCEEEEEEEEHHH
T ss_conf 6604677677999986768899866598885677799999979998-----889688999998788
No 10
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=1.00 E-value=1 Score=23.46 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred EEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCC
Q ss_conf 0389899865888754612777237998999529999997212555799982257999822346
Q 000652 520 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 583 (1372)
Q Consensus 520 ~~~~S~V~yHnk~P~F~DEIKI~LP~~L~~~HHLLFTFyHVs~q~K~~~~~et~vGYAwLPLl~ 583 (1372)
....|.|...+.+|.|+|++.+.+|..-.....|.|+.|+-+.- .....+|.+.+||-.
T Consensus 62 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~-----~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI-----GKNDAIGKVFVGYNS 120 (159)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSS-----SCCEEEEEEEEETTC
T ss_pred CEEECCEECCCCCCCCCCEEEEECCHHHHCCCEEEEEEEECCCC-----CCCCEEEEEEECCCC
T ss_conf 34617603299998566539998477993876799999979988-----888538889988877
Done!